Your job contains 1 sequence.
>004454
MEAASEAEEKKKKKKPLEAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGL
SDRQLQMWFCHRRLKDRKAPTAKRQPKDFQSLVPAGEKELAGSELVRGGMAVQRYYAVPM
APMLPFPLPQRNIVEMRVIAFVESQLGEPLREDGPILGVEFDSLPPDAFGRPIGPAAMGH
QKHSVRPLEAKEYERLDVKPFKDMFTIHPQGATRTVHEYKFLPEQPTVRSETHEKAASSY
PYGSPADGSTARNSSLRAGHPFMHGSEQISSGYGFPGQLPNLNLLSHQGRHSHLLPSVSG
EYENILRKNSFISAAMDAHVGGQPITAMDNAFISSDRRVSHDEDVSRTEKKRKSEEARIA
REVEAHEKRIRKELEKQDILRRKREEQIRKEMERQDRERRKEEERLLREKLREEERYLRE
QRRELERREKFLQKESIRAEKRRQKEELRRVKEAERLKVANERAVARRIAKESMALVEDE
RLELMELAASSKGLPTIVSLDFETLQNLDLFRDRPCTFPPKSVQLKRPFAVQPWNDSEDN
IGNLLMVWRFLITFADVLGLWPFTLDEFVQAFHDYDPRLLGEIHVTLLRSVIKDIEDAAK
TPFTGLGANQNSAVNPGGAHPQIVEGAYAWGFDIRSWQLHLNALTWPEILRQFALSAGFG
PQLNKRNIEKMYPHDNNEGNDGENIISNLRNGSAVGNAVAIMHEMGLSNLRRSRHRLTPG
TVKFAAFHVLSLEGSEGLTILEVADKIQVTLEL
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004454
(753 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2167628 - symbol:RLT2 "RINGLET 2" species:3702... 1211 4.9e-184 2
TAIR|locus:2032505 - symbol:HB-1 "homeobox-1" species:370... 1148 1.9e-160 3
WB|WBGene00000430 - symbol:ceh-5 species:6239 "Caenorhabd... 124 8.2e-07 1
UNIPROTKB|F1MJX0 - symbol:CDX2 "Uncharacterized protein" ... 118 3.6e-06 1
UNIPROTKB|F8VWZ5 - symbol:HLX "H2.0-like homeobox protein... 118 3.6e-06 1
RGD|621233 - symbol:Cdx1 "caudal type homeo box 1" specie... 113 1.2e-05 1
UNIPROTKB|Q05095 - symbol:Cdx1 "Homeobox protein CDX-1" s... 113 1.2e-05 1
UNIPROTKB|F1RWG7 - symbol:HOXB2 "Uncharacterized protein"... 132 2.0e-05 1
FB|FBgn0000606 - symbol:eve "even skipped" species:7227 "... 111 3.7e-05 2
UNIPROTKB|F1MCF6 - symbol:CDX1 "Uncharacterized protein" ... 108 4.3e-05 1
ZFIN|ZDB-GENE-090313-51 - symbol:phox2ba "paired-like hom... 103 5.8e-05 2
UNIPROTKB|F1P4T4 - symbol:HOXD13 "Homeobox protein Hox-D1... 106 7.0e-05 1
UNIPROTKB|F6R243 - symbol:CDX1 "Homeobox protein CDX-1" s... 106 7.0e-05 1
UNIPROTKB|O75360 - symbol:PROP1 "Homeobox protein prophet... 121 0.00011 1
UNIPROTKB|F1NHM4 - symbol:CDX4 "Uncharacterized protein" ... 103 0.00015 1
UNIPROTKB|G3V567 - symbol:PAX6 "Paired box protein Pax-6"... 103 0.00015 1
RGD|3116 - symbol:Msx2 "msh homeobox 2" species:10116 "Ra... 103 0.00015 1
UNIPROTKB|P52953 - symbol:Msx2 "Homeobox protein MSX-2" s... 103 0.00015 1
UNIPROTKB|H0YJ33 - symbol:CDX2 "Homeobox protein CDX-2" s... 110 0.00016 1
UNIPROTKB|Q28J15 - symbol:hesx1 "Homeobox expressed in ES... 116 0.00017 1
UNIPROTKB|Q91898 - symbol:hesx1-b "Homeobox expressed in ... 116 0.00017 1
UNIPROTKB|G3V2N9 - symbol:NOBOX "Homeobox protein NOBOX" ... 112 0.00022 1
UNIPROTKB|I3LF97 - symbol:I3LF97 "Uncharacterized protein... 101 0.00024 1
UNIPROTKB|Q9UBR4 - symbol:LHX3 "LIM/homeobox protein Lhx3... 114 0.00027 2
ZFIN|ZDB-GENE-040628-4 - symbol:bsx "brain specific homeo... 118 0.00031 1
UNIPROTKB|Q3C1V8 - symbol:BSX "Brain-specific homeobox pr... 117 0.00034 1
UNIPROTKB|F1P4U7 - symbol:HOXD11 "Homeobox protein Hox-D1... 99 0.00039 1
UNIPROTKB|F1S9I5 - symbol:HLX "Uncharacterized protein" s... 117 0.00040 1
UNIPROTKB|F8VVX3 - symbol:HLX "H2.0-like homeobox protein... 118 0.00041 1
RGD|1588601 - symbol:Hoxd3 "homeo box D3" species:10116 "... 98 0.00050 1
RGD|1595784 - symbol:Hoxc9 "homeobox C9" species:10116 "R... 98 0.00050 1
UNIPROTKB|P18866 - symbol:Hoxc8 "Homeobox protein Hox-C8"... 98 0.00050 1
UNIPROTKB|P18867 - symbol:Hoxd3 "Homeobox protein Hox-D3"... 98 0.00050 1
UNIPROTKB|P14652 - symbol:HOXB2 "Homeobox protein Hox-B2"... 119 0.00055 1
UNIPROTKB|O97581 - symbol:LHX3 "LIM/homeobox protein Lhx3... 104 0.00058 2
UNIPROTKB|F1NPY3 - symbol:F1NPY3 "Uncharacterized protein... 113 0.00062 1
UNIPROTKB|Q02814 - symbol:CHOX-CAD2 "Homeobox protein CHO... 97 0.00064 1
UNIPROTKB|G3X7M1 - symbol:SHOX "Uncharacterized protein" ... 117 0.00068 1
UNIPROTKB|E2QX72 - symbol:PAX3 "Uncharacterized protein" ... 120 0.00071 1
UNIPROTKB|H0YJ32 - symbol:SHOX2 "Short stature homeobox p... 110 0.00073 1
UNIPROTKB|F1NL45 - symbol:MIXL1 "Uncharacterized protein"... 96 0.00082 1
UNIPROTKB|H9L184 - symbol:Gga.48067 "Uncharacterized prot... 96 0.00082 1
UNIPROTKB|E2R2R4 - symbol:HLX "Uncharacterized protein" s... 118 0.00089 1
UNIPROTKB|F1LMV3 - symbol:Pax3 "Protein Pax3" species:101... 119 0.00092 1
>TAIR|locus:2167628 [details] [associations]
symbol:RLT2 "RINGLET 2" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;ISS;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0009630 "gravitropism" evidence=RCA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0010228 "vegetative
to reproductive phase transition of meristem" evidence=IGI]
InterPro:IPR001356 InterPro:IPR009057 Pfam:PF00046 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0043565 GO:GO:0003700 EMBL:AB005239 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0010228 InterPro:IPR004022 InterPro:IPR018500
InterPro:IPR018501 Pfam:PF02791 SMART:SM00571 PROSITE:PS50827
IPI:IPI00536771 RefSeq:NP_199231.1 UniGene:At.24988
ProteinModelPortal:Q9FFH1 SMR:Q9FFH1 PRIDE:Q9FFH1
EnsemblPlants:AT5G44180.1 GeneID:834441 KEGG:ath:AT5G44180
TAIR:At5g44180 HOGENOM:HOG000241585 InParanoid:Q9FFH1 OMA:AFHDYDP
PhylomeDB:Q9FFH1 ProtClustDB:CLSN2715588 ArrayExpress:Q9FFH1
Genevestigator:Q9FFH1 Uniprot:Q9FFH1
Length = 1694
Score = 1211 (431.4 bits), Expect = 4.9e-184, Sum P(2) = 4.9e-184
Identities = 227/313 (72%), Positives = 263/313 (84%)
Query: 436 SIRAEKRRQKEELRRVKEAERLKVANERAVARRIAKESMALVEDERLELMELAASSKGLP 495
+IRAEK RQKEE+R+ KE RLK ANERA+AR+IAKESM L+EDERLELME+AA +KGLP
Sbjct: 412 TIRAEKMRQKEEMRKEKEVARLKAANERAIARKIAKESMELIEDERLELMEVAALTKGLP 471
Query: 496 TIVSLDFETLQNLDLFRDRPCTFPPKSVQLKRPFAVQPWNDSEDNIGNLLMVWRFLITFA 555
++++LDFETLQNLD +RD+ FPP SV+LK+PFAV+PWN S++N+ NLLMVWRFLITFA
Sbjct: 472 SMLALDFETLQNLDEYRDKQAIFPPTSVKLKKPFAVKPWNGSDENVANLLMVWRFLITFA 531
Query: 556 DVLGLWPFTLDEFVQAFHDYDPRLLGEIHVTLLRSVIKDIEDAAKTPFTGLGANQNSAVN 615
DVLGLWPFTLDEF QAFHDYDPRL+GEIH+ LL+++IKDIE +T TG+GANQN A N
Sbjct: 532 DVLGLWPFTLDEFAQAFHDYDPRLMGEIHIVLLKTIIKDIEGVVRTLSTGVGANQNVAAN 591
Query: 616 PGGAHPQIVEGAYAWGFDIRSWQLHLNALTWPEILRQFALSAGFGPQLNKRNIEKMYPHD 675
PGG HP +VEGAYAWGFDIRSW+ +LN TWPEILRQ ALSAG GPQL K NI + HD
Sbjct: 592 PGGGHPHVVEGAYAWGFDIRSWRKNLNVFTWPEILRQLALSAGLGPQLKKMNIRTVSVHD 651
Query: 676 NNEGNDGENIISNLRNGSAVGNAVAIMHEMGLSNLRRSRHRLTPGTVKFAAFHVLSLEGS 735
+NE N+ EN+I NLR G A NA A M E GLSN RRSRHRLTPGTVKFAAFHVLSLEG
Sbjct: 652 DNEANNSENVIFNLRKGVAAENAFAKMQERGLSNPRRSRHRLTPGTVKFAAFHVLSLEGE 711
Query: 736 EGLTILEVADKIQ 748
+GL ILEVA+KIQ
Sbjct: 712 KGLNILEVAEKIQ 724
Score = 600 (216.3 bits), Expect = 4.9e-184, Sum P(2) = 4.9e-184
Identities = 154/385 (40%), Positives = 221/385 (57%)
Query: 25 RKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPT-AK 83
RKMKTA+QLE+LE TY+ E YPSEA+RA+LS +L LSDRQLQMWFCHRRLK+RK+ T +K
Sbjct: 21 RKMKTAAQLEVLENTYSAEPYPSEAIRADLSVKLNLSDRQLQMWFCHRRLKERKSTTPSK 80
Query: 84 RQPKDF--QSLVPAGEKELAGSELVRGGMAVQRYYA-----VPMAPMLPFPLPQRNIVEM 136
RQ K+ + + + E + +LV G R A + + F P E+
Sbjct: 81 RQRKELVTPTAMESWEPPVNAGDLVAGNELDSRRAARGSGGSGVTVVRRFNEPSS--AEV 138
Query: 137 RVIAFVESQLGEPLREDGPILGVEFDSLPPDAFGRPIGPAAMGHQKHSVRPLEAKEYERL 196
R I +VE+QLGE LR++GP+LG+EFD LPP AFG PI + H+K + + E Y R
Sbjct: 139 RAIGYVEAQLGERLRDNGPVLGMEFDPLPPGAFGMPIEMPS--HRKATRQAFETNIYVRS 196
Query: 197 DVKPFKDMFTIHPQGATRTVHEYKFLPEQPTVRSETHEKAASSYPYGSPADGSTARNSSL 256
DVKP KD H R + EY+F+PE P+ R++ E+ + S+ +G P DGS R S++
Sbjct: 197 DVKPIKD----H----VRPIREYQFIPELPSSRTDHSERVSPSHHFGVPLDGSVMRVSAV 248
Query: 257 RAGHPFMHGSEQISSGYGFPGQLPNLNLLSHQGRHSHLLPSVSGEYENILRKNSFISAAM 316
AGH Y Q+PNLNL +HQG+ H+ EY++ +K+ +AA
Sbjct: 249 SAGH---------RDDYKISPQIPNLNLATHQGKPGHVYSPNLVEYDSPYQKSYMDTAAQ 299
Query: 317 ---DAHVGGQPITAM---DNAFISSDRRVSHDEDVSRTEKKRKSEEARIAREVEAH---- 366
D V + D+ + +R ++E +R ++ ++ E RI RE+E
Sbjct: 300 VHDDPFVKSEREVGNEDEDDDALQLERHRKNEE--ARIAREVEAHEKRIRRELEKQDMLR 357
Query: 367 ---EKRIRKELEKQDILRRKREEQI 388
E++IRKE+E+QD RRK EE++
Sbjct: 358 RKREEQIRKEMERQDRERRKEEERL 382
Score = 70 (29.7 bits), Expect = 5.0e-128, Sum P(2) = 5.0e-128
Identities = 13/42 (30%), Positives = 29/42 (69%)
Query: 343 EDVSRTEKKRKSEEARIAREVEAHEKRIRKELEKQDILRRKR 384
+++ R +++R+ EE R+ RE + E+R KE + +++ RR++
Sbjct: 366 KEMERQDRERRKEEERLLREKQREEERYLKE-QMRELQRREK 406
Score = 51 (23.0 bits), Expect = 4.1e-59, Sum P(2) = 4.1e-59
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 437 IRAEKRRQKEELRRVKEAERLKVANERAVARRIAKESMALVEDERLELMELAASSK 492
IR E RQ E R KE ERL +R R + ++ L E+ E + K
Sbjct: 364 IRKEMERQDRERR--KEEERLLREKQREEERYLKEQMRELQRREKFLKKETIRAEK 417
Score = 45 (20.9 bits), Expect = 1.7e-58, Sum P(2) = 1.7e-58
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 438 RAEKRRQKEELRRVKEAERLKVANERAVARR-IAKESMALVEDERLE 483
R + +Q+EE R +KE R E+ + + I E M E+ R E
Sbjct: 381 RLLREKQREEERYLKEQMRELQRREKFLKKETIRAEKMRQKEEMRKE 427
Score = 39 (18.8 bits), Expect = 9.5e-125, Sum P(2) = 9.5e-125
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 344 DVSRTEKKRKSEEARIAREVEAHEKRIRKELEK 376
++ R EK K E R + + E R KE+ +
Sbjct: 400 ELQRREKFLKKETIRAEKMRQKEEMRKEKEVAR 432
>TAIR|locus:2032505 [details] [associations]
symbol:HB-1 "homeobox-1" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0009630 "gravitropism" evidence=RCA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0010228 "vegetative
to reproductive phase transition of meristem" evidence=IGI]
InterPro:IPR001356 InterPro:IPR009057 Pfam:PF00046 PROSITE:PS50071
SMART:SM00389 EMBL:CP002684 GO:GO:0005634 GO:GO:0043565
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0010228
InterPro:IPR004022 InterPro:IPR018500 InterPro:IPR018501
Pfam:PF02791 SMART:SM00571 PROSITE:PS50827 IPI:IPI00539857
RefSeq:NP_174164.2 UniGene:At.27788 PRIDE:F4HY56
EnsemblPlants:AT1G28420.1 GeneID:839740 KEGG:ath:AT1G28420
OMA:ESHLRIM Uniprot:F4HY56
Length = 1705
Score = 1148 (409.2 bits), Expect = 1.9e-160, Sum P(3) = 1.9e-160
Identities = 215/311 (69%), Positives = 260/311 (83%)
Query: 438 RAEKRRQKEELRRVKEAERLKVANERAVARRIAKESMALVEDERLELMELAASSKGLPTI 497
RAEK++QK+E+RR K+A R K+A E+A ARRIAKESM L+EDE+LELMELAA SKGLP++
Sbjct: 449 RAEKKKQKDEIRREKDAIRRKLAIEKATARRIAKESMDLIEDEQLELMELAAISKGLPSV 508
Query: 498 VSLDFETLQNLDLFRDRPCTFPPKSVQLKRPFAVQPWNDSEDNIGNLLMVWRFLITFADV 557
+ LD +TLQNL+++RD TFPPKS+QLK PFA+ PW DS++ +GNLLMVWRFLI+F+DV
Sbjct: 509 LQLDHDTLQNLEVYRDSLSTFPPKSLQLKMPFAISPWKDSDETVGNLLMVWRFLISFSDV 568
Query: 558 LGLWPFTLDEFVQAFHDYDPRLLGEIHVTLLRSVIKDIEDAAKTPFTGLGANQNSAVNPG 617
L LWPFTLDEF+QAFHDYD RLLGEIHVTLLRS+I+D+ED A+TPF+G+G NQ + NP
Sbjct: 569 LDLWPFTLDEFIQAFHDYDSRLLGEIHVTLLRSIIRDVEDVARTPFSGIGNNQYTTANPE 628
Query: 618 GAHPQIVEGAYAWGFDIRSWQLHLNALTWPEILRQFALSAGFGPQLNKRNIEKMYPHDNN 677
G HPQIVEGAYAWGFDIRSW+ HLN LTWPEILRQ ALSAGFGP+L K++ D +
Sbjct: 629 GGHPQIVEGAYAWGFDIRSWKKHLNPLTWPEILRQLALSAGFGPKLKKKHSRLTNTGDKD 688
Query: 678 EGNDGENIISNLRNGSAVGNAVAIMHEMGLSNLRRSRHRLTPGTVKFAAFHVLSLEGSEG 737
E E++IS +RNG+A +A A M E GL R+SRHRLTPGTVKFAAFHVLSLEGS+G
Sbjct: 689 EAKGCEDVISTIRNGTAAESAFASMREKGLLAPRKSRHRLTPGTVKFAAFHVLSLEGSKG 748
Query: 738 LTILEVADKIQ 748
LT+LE+ADKIQ
Sbjct: 749 LTVLELADKIQ 759
Score = 257 (95.5 bits), Expect = 1.9e-160, Sum P(3) = 1.9e-160
Identities = 88/264 (33%), Positives = 132/264 (50%)
Query: 137 RVIAFVESQLGEPLREDGPILGVEFDSLPPDAFGRPIGPAAMGHQKHSVRPLEAKEYERL 196
R I +E+QLGEPLR+DGPILG+EFD LPP AFG PI AM QKH + P E+ YER
Sbjct: 183 RAIVCIEAQLGEPLRDDGPILGMEFDPLPPGAFGTPI---AM--QKHLLHPYESDLYERH 237
Query: 197 DVKPFKDMFTIHPQGATRTVHEYKFLPEQPTVRSETHEKAASSYPYGSPADGSTARNSS- 255
D +P + H A R+ HE + L + + +E+ + ++ G + + +R SS
Sbjct: 238 DPRPRRS----H--AAARSFHEQQSLDDPSSFTPNMYERYSENHARGMDYEVARSRISSF 291
Query: 256 LRAGHPFM-------HGSEQISSGYGFPGQLPNLNLLSHQGRHSHLLP--SVSGEYENIL 306
+ A P H S S+ +P+ +H G L SV G + L
Sbjct: 292 MHANGPVPRSYVTPGHASRNCSTSQQ---DMPSPIESAHHGDRFLLEKDSSVLGTEDPYL 348
Query: 307 RKNSFISAAMDAHVGGQPITAMDNAF-ISSDRRVSHD-EDVSRTEKKRKSEEARIAREVE 364
+ + + D H G+ I D S+ R +H +D+ + E +RK E R+ +E+E
Sbjct: 349 LPDG-VRKSSDVHRKGK-IN--DGRLGRGSETRENHGPKDLEKLEIQRKKNEERMRKEME 404
Query: 365 AHEKRIRKELEKQDILRRKREEQI 388
+E+ RKE E+ R K EE++
Sbjct: 405 RNERERRKEEERLMRERIKEEERL 428
Score = 213 (80.0 bits), Expect = 1.9e-160, Sum P(3) = 1.9e-160
Identities = 49/83 (59%), Positives = 56/83 (67%)
Query: 25 RKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAKR 84
R+MKT QLE LEK Y+ E YPSEA RAELS +L LSDRQLQMWFCHRRLKD+K + +
Sbjct: 43 RQMKTPFQLETLEKVYSEEKYPSEATRAELSEKLDLSDRQLQMWFCHRRLKDKKDGQSNK 102
Query: 85 QPKDFQSLVP-AGEKEL---AGS 103
K + V A EL AGS
Sbjct: 103 PVKSSVAAVQSASVNELPAAAGS 125
Score = 69 (29.3 bits), Expect = 8.6e-37, Sum P(3) = 8.6e-37
Identities = 22/50 (44%), Positives = 27/50 (54%)
Query: 438 RAEKRRQKEELR----RVKEAERLKVANERAVARRIAKESMALVEDERLE 483
R E+ R+KEE R R+KE ERL+ R V RR E E+ER E
Sbjct: 405 RNERERRKEEERLMRERIKEEERLQREQRREVERR---EKFLQRENERAE 451
Score = 56 (24.8 bits), Expect = 2.9e-139, Sum P(3) = 2.9e-139
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 349 EKKRKSEEARIAREVEAHEKRIRKELEKQDILRRKREEQI 388
E++R E R REVE EK +++E E+ + ++K++++I
Sbjct: 424 EEERLQREQR--REVERREKFLQRENERAE--KKKQKDEI 459
Score = 56 (24.8 bits), Expect = 1.9e-35, Sum P(3) = 1.9e-35
Identities = 22/76 (28%), Positives = 42/76 (55%)
Query: 437 IRAEKRRQKEELRRVKEAER-LKVANERAVARRIAKESMALVEDE-RLELMELAASSKGL 494
I+ E+R Q+E+ R V+ E+ L+ NERA ++ K+ + +D R +L A+++ +
Sbjct: 422 IKEEERLQREQRREVERREKFLQRENERAEKKK-QKDEIRREKDAIRRKLAIEKATARRI 480
Query: 495 PTIVSLDFETLQNLDL 510
S+D + L+L
Sbjct: 481 AK-ESMDLIEDEQLEL 495
Score = 50 (22.7 bits), Expect = 6.3e-13, Sum P(2) = 6.3e-13
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 438 RAEKRRQKEELRRVKEAERLKVANERAVARRIAKESMALVEDERLE 483
+ E +R+K E R KE ER + R R+ +E + E+ERL+
Sbjct: 387 KLEIQRKKNEERMRKEMERNE-RERRKEEERLMRERIK--EEERLQ 429
Score = 47 (21.6 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 223 PEQPTVRSETHEKAASSYPYGSPADGSTAR 252
PE+P V E + S +P SP G R
Sbjct: 1434 PEKPEVIPEDENEQISLFPRDSPFKGKGPR 1463
Score = 43 (20.2 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 347 RTEKKRKSEEARIAREVEAHEKRIRKELEKQDILRRKRE 385
R EKK++ +E R RE +A +++ +EK R +E
Sbjct: 449 RAEKKKQKDEIR--REKDAIRRKLA--IEKATARRIAKE 483
Score = 41 (19.5 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 26/125 (20%), Positives = 44/125 (35%)
Query: 141 FVESQLGEPLREDGPILGVEFDSLPPDAFGRPIGPAAMGHQKHSVRPLEAKEYERLD-VK 199
+ E+QL D +L ++ +L IG + + + LD K
Sbjct: 989 WAEAQLDNSCMRD--VLKLDLQNLASSKTESTIGLPIIQSSTRERDSFDRDPSQLLDETK 1046
Query: 200 PFKDMFT-IHPQGATRTV---------HEYKFLPEQPTVRSETHEKAASSYPYGSPADGS 249
P +D+ +H A R + Y + ++S KA YPY S G
Sbjct: 1047 PLEDLSNDLHKSSAERALINQDANISQENYASKRSRSQLKSYIGHKAEEVYPYRSLPLGQ 1106
Query: 250 TARNS 254
R++
Sbjct: 1107 DRRHN 1111
>WB|WBGene00000430 [details] [associations]
symbol:ceh-5 species:6239 "Caenorhabditis elegans"
[GO:0000976 "transcription regulatory region sequence-specific DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000047
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0007275 GO:GO:0005634 GO:GO:0003700
Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689
GO:GO:0000976 EMBL:Z81036 PIR:S05706 PIR:T19335 RefSeq:NP_492586.2
ProteinModelPortal:P20269 SMR:P20269 EnsemblMetazoa:C16C2.1
GeneID:191616 KEGG:cel:CELE_C16C2.1 UCSC:C16C2.1 CTD:191616
WormBase:C16C2.1 eggNOG:NOG309408 GeneTree:ENSGT00680000099870
HOGENOM:HOG000017392 InParanoid:P20269 OMA:QNYWTAA NextBio:949690
Uniprot:P20269
Length = 134
Score = 124 (48.7 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 29/71 (40%), Positives = 44/71 (61%)
Query: 25 RKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAKR 84
R + T QLE LE+++ Y S + RA+L+ LGLSD Q+++WF +RR K +K + R
Sbjct: 39 RTVFTDEQLEKLEESFNTSGYLSGSTRAKLAESLGLSDNQVKVWFQNRRTKQKKIDS--R 96
Query: 85 QPKDFQSLVPA 95
P ++L PA
Sbjct: 97 DPIKPETLKPA 107
>UNIPROTKB|F1MJX0 [details] [associations]
symbol:CDX2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060711 "labyrinthine layer development" evidence=IEA]
[GO:0045597 "positive regulation of cell differentiation"
evidence=IEA] [GO:0045197 "establishment or maintenance of
epithelial cell apical/basal polarity" evidence=IEA] [GO:0035019
"somatic stem cell maintenance" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0009952
"anterior/posterior pattern specification" evidence=IEA]
[GO:0008333 "endosome to lysosome transport" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=IEA]
[GO:0001829 "trophectodermal cell differentiation" evidence=IEA]
[GO:0001568 "blood vessel development" evidence=IEA] [GO:0000794
"condensed nuclear chromosome" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0000976
"transcription regulatory region sequence-specific DNA binding"
evidence=IEA] InterPro:IPR000047 InterPro:IPR001356
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00031
PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389 GO:GO:0017053
GO:GO:0003714 GO:GO:0009952 GO:GO:0045597 GO:GO:0003700
Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689
GeneTree:ENSGT00530000063388 GO:GO:0000122 GO:GO:0001829
GO:GO:0000794 GO:GO:0008333 GO:GO:0035019 GO:GO:0001568
GO:GO:0000976 GO:GO:0060711 GO:GO:0045197 EMBL:DAAA02033157
IPI:IPI00838985 Ensembl:ENSBTAT00000047376 Uniprot:F1MJX0
Length = 142
Score = 118 (46.6 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 28/65 (43%), Positives = 41/65 (63%)
Query: 32 QLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAKRQPKDFQS 91
+LE LEK + Y + +AEL+A LGLS+RQ+++WF +RR K+RK K Q + Q
Sbjct: 34 RLE-LEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINKKKLQQQQQQP 92
Query: 92 LVPAG 96
P+G
Sbjct: 93 PPPSG 97
>UNIPROTKB|F8VWZ5 [details] [associations]
symbol:HLX "H2.0-like homeobox protein" species:9606 "Homo
sapiens" [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0007519 "skeletal muscle tissue development" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA] [GO:0045627 "positive regulation of T-helper 1 cell
differentiation" evidence=IEA] [GO:0045629 "negative regulation of
T-helper 2 cell differentiation" evidence=IEA] [GO:0046622
"positive regulation of organ growth" evidence=IEA] [GO:0048484
"enteric nervous system development" evidence=IEA] [GO:0048557
"embryonic digestive tract morphogenesis" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000047 InterPro:IPR001356
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00031
PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389 GO:GO:0005634
GO:GO:0008284 GO:GO:0001889 GO:GO:0003700 Gene3D:1.10.10.60
InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689 GO:GO:0046622
GO:GO:0000976 GO:GO:0048484 GO:GO:0045629 GO:GO:0007519
GO:GO:0045627 GO:GO:0048557 EMBL:AL445423 HGNC:HGNC:4978
IPI:IPI00643042 ProteinModelPortal:F8VWZ5 SMR:F8VWZ5
Ensembl:ENST00000427693 ArrayExpress:F8VWZ5 Bgee:F8VWZ5
Uniprot:F8VWZ5
Length = 151
Score = 118 (46.6 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 36 LEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAKRQPKDFQSLVPA 95
LEK + ++ Y ++ R +L+A LGL+D Q+++WF +RR+K R + A+ Q KD A
Sbjct: 24 LEKRFEIQKYVTKPDRKQLAAMLGLTDAQVKVWFQNRRMKWRHSKEAQAQ-KDKDK--EA 80
Query: 96 GEKELAGSELVRG 108
GEK G+ G
Sbjct: 81 GEKPSGGAPAADG 93
>RGD|621233 [details] [associations]
symbol:Cdx1 "caudal type homeo box 1" species:10116 "Rattus
norvegicus" [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;TAS] [GO:0005634 "nucleus" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007389
"pattern specification process" evidence=ISO] [GO:0009952
"anterior/posterior pattern specification" evidence=IEA;ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0060349 "bone
morphogenesis" evidence=IEA;ISO] InterPro:IPR000047
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 RGD:621233 GO:GO:0005634 GO:GO:0009952 GO:GO:0045944
GO:GO:0003700 Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024
SUPFAM:SSF46689 GO:GO:0000976 GO:GO:0060349 eggNOG:NOG291290
HOGENOM:HOG000115975 HOVERGEN:HBG005302 OrthoDB:EOG42FSK7
EMBL:M91450 IPI:IPI00766495 PIR:S27397 ProteinModelPortal:Q05095
SMR:Q05095 STRING:Q05095 UCSC:RGD:621233 InParanoid:Q05095
ArrayExpress:Q05095 Genevestigator:Q05095
GermOnline:ENSRNOG00000018624 Uniprot:Q05095
Length = 123
Score = 113 (44.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 26/69 (37%), Positives = 42/69 (60%)
Query: 32 QLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAKRQPKDFQS 91
+LE LEK + Y + ++EL+A LGL++RQ+++WF +RR K+RK K+Q + Q
Sbjct: 17 RLE-LEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQQQQQQQQ 75
Query: 92 LVPAGEKEL 100
P +L
Sbjct: 76 QQPMPPTQL 84
>UNIPROTKB|Q05095 [details] [associations]
symbol:Cdx1 "Homeobox protein CDX-1" species:10116 "Rattus
norvegicus" [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000047 InterPro:IPR001356
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00031
PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389 RGD:621233
GO:GO:0005634 GO:GO:0009952 GO:GO:0045944 GO:GO:0003700
Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689
GO:GO:0000976 GO:GO:0060349 eggNOG:NOG291290 HOGENOM:HOG000115975
HOVERGEN:HBG005302 OrthoDB:EOG42FSK7 EMBL:M91450 IPI:IPI00766495
PIR:S27397 ProteinModelPortal:Q05095 SMR:Q05095 STRING:Q05095
UCSC:RGD:621233 InParanoid:Q05095 ArrayExpress:Q05095
Genevestigator:Q05095 GermOnline:ENSRNOG00000018624 Uniprot:Q05095
Length = 123
Score = 113 (44.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 26/69 (37%), Positives = 42/69 (60%)
Query: 32 QLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAKRQPKDFQS 91
+LE LEK + Y + ++EL+A LGL++RQ+++WF +RR K+RK K+Q + Q
Sbjct: 17 RLE-LEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQQQQQQQQ 75
Query: 92 LVPAGEKEL 100
P +L
Sbjct: 76 QQPMPPTQL 84
>UNIPROTKB|F1RWG7 [details] [associations]
symbol:HOXB2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0048857 "neural
nucleus development" evidence=IEA] [GO:0048704 "embryonic skeletal
system morphogenesis" evidence=IEA] [GO:0021612 "facial nerve
structural organization" evidence=IEA] [GO:0021570 "rhombomere 4
development" evidence=IEA] [GO:0021569 "rhombomere 3 development"
evidence=IEA] [GO:0009953 "dorsal/ventral pattern formation"
evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA] [GO:0002011 "morphogenesis of an
epithelial sheet" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] InterPro:IPR001356
InterPro:IPR001827 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00032 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 GO:GO:0009952 GO:GO:0043565
GO:GO:0003700 Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024
SUPFAM:SSF46689 GO:GO:0009953 GO:GO:0048704 GO:GO:0002011
GO:GO:0021612 GeneTree:ENSGT00700000104446 KO:K09302 GO:GO:0021569
GO:GO:0021570 OMA:RAAWEAC GO:GO:0048857 EMBL:CU856160
RefSeq:XP_003131594.1 Ensembl:ENSSSCT00000019087 GeneID:100521989
KEGG:ssc:100521989 Uniprot:F1RWG7
Length = 353
Score = 132 (51.5 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 56/164 (34%), Positives = 77/164 (46%)
Query: 25 RKMKTA---SQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPT 81
R+++TA +QL LEK + Y R E++A L L++RQ+++WF +RR+K K T
Sbjct: 142 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMK-HKRQT 200
Query: 82 AKRQPKDFQSLVPAGEKELA-GSE--LVRGGM-AVQRYYA-VPMAP--MLPFPL--PQRN 132
R+P D P K+ SE L G +V R V P + P PL P
Sbjct: 201 QHREPPDGGPACPGAPKKAGEASEEPLASPGRPSVSRAAREVCCQPPEVAPGPLGAPGLR 260
Query: 133 IVEMRVIAFVESQLGEPLREDGPILGVEFDSLPPDAFG-RPIGP 175
+ RV G LR G G+E + LP DAF RP P
Sbjct: 261 PLAARVEGAGARSPGGELRGAG---GLEPERLPEDAFPERPYSP 301
>FB|FBgn0000606 [details] [associations]
symbol:eve "even skipped" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=ISS;NAS;IDA]
[GO:0007376 "cephalic furrow formation" evidence=IMP] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IDA;IMP] [GO:0003705 "RNA polymerase II distal
enhancer sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0007366
"periodic partitioning by pair rule gene" evidence=NAS;TAS]
[GO:0000980 "RNA polymerase II distal enhancer sequence-specific
DNA binding" evidence=IDA] [GO:0007350 "blastoderm segmentation"
evidence=TAS] [GO:0008595 "anterior/posterior axis specification,
embryo" evidence=NAS] [GO:0009997 "negative regulation of
cardioblast cell fate specification" evidence=IMP] [GO:0007517
"muscle organ development" evidence=TAS] [GO:0007507 "heart
development" evidence=NAS] [GO:0045165 "cell fate commitment"
evidence=NAS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEP] [GO:0001709 "cell
fate determination" evidence=NAS] [GO:0007417 "central nervous
system development" evidence=NAS] [GO:0050770 "regulation of
axonogenesis" evidence=IMP] [GO:0007377 "germ-band extension"
evidence=IMP;TAS] [GO:0035290 "trunk segmentation" evidence=TAS]
[GO:0035289 "posterior head segmentation" evidence=TAS] [GO:0008045
"motor neuron axon guidance" evidence=IMP] InterPro:IPR001356
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS50071 SMART:SM00389 EMBL:AE013599 GO:GO:0005634
GO:GO:0007507 GO:GO:0008595 GO:GO:0045944 GO:GO:0007417
Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689
GO:GO:0003705 GO:GO:0000980 GO:GO:0009997 GO:GO:0000122
GO:GO:0008045 GO:GO:0050770 GO:GO:0007517 GO:GO:0007366
GO:GO:0001709 GO:GO:0007376 GO:GO:0035289 GO:GO:0007377 EMBL:M14767
EMBL:X05138 EMBL:U32087 EMBL:U32088 EMBL:U32089 EMBL:U32090
EMBL:U32091 PIR:A26066 RefSeq:NP_523670.2 UniGene:Dm.18510 PDB:1JGG
PDBsum:1JGG ProteinModelPortal:P06602 SMR:P06602 STRING:P06602
PRIDE:P06602 EnsemblMetazoa:FBtr0088390 GeneID:36039
KEGG:dme:Dmel_CG2328 CTD:36039 FlyBase:FBgn0000606 eggNOG:NOG298527
GeneTree:ENSGT00690000102189 HOGENOM:HOG000148791 InParanoid:P06602
KO:K09320 OMA:SVRRYRT OrthoDB:EOG4XWDF5 EvolutionaryTrace:P06602
GenomeRNAi:36039 NextBio:796502 Bgee:P06602 GermOnline:CG2328
GO:GO:0035290 Uniprot:P06602
Length = 376
Score = 111 (44.1 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 29 TASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAKRQP 86
T QL LEK + E+Y S R EL+AQL L + +++WF +RR+KD++ A P
Sbjct: 78 TRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQRIAVAWP 135
Score = 64 (27.6 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 24/88 (27%), Positives = 37/88 (42%)
Query: 219 YKFLPEQPTVRSETHEKAASS----YPYGSPADGSTARNSSLRAGHPFMHGSEQISSGYG 274
Y + P + + AA+S YP +PA + A ++ A +P M G
Sbjct: 136 YAAVYSDPAFAASILQAAANSVGMPYPPYAPAAAAAAAAAAAVATNPMMATG---MPPMG 192
Query: 275 FPGQLPNLNLLSHQGRHSHLLPSVSGEY 302
P Q+P + + H G H PS G+Y
Sbjct: 193 MP-QMPTMQMPGHSGHAGH--PSPYGQY 217
Score = 55 (24.4 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 22/74 (29%), Positives = 29/74 (39%)
Query: 222 LPEQPTVRSETHEKAA---SSY------PYGSPADGSTARNSSLRAGHPFMHGSEQISSG 272
+P+ PT++ H A S Y PY PA + + HP M GS S
Sbjct: 193 MPQMPTMQMPGHSGHAGHPSPYGQYRYTPYHIPARPAPPHPAGPHMHHPHMMGSSATGSS 252
Query: 273 Y-----GFPGQLPN 281
Y G G LP+
Sbjct: 253 YSAGAAGLLGALPS 266
>UNIPROTKB|F1MCF6 [details] [associations]
symbol:CDX1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0060349 "bone
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0009952 "anterior/posterior pattern specification"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0000976
"transcription regulatory region sequence-specific DNA binding"
evidence=IEA] InterPro:IPR000047 InterPro:IPR001356
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00031
PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389 GO:GO:0005634
GO:GO:0009952 GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.60
InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689
GeneTree:ENSGT00530000063388 GO:GO:0000976 GO:GO:0060349
EMBL:DAAA02020624 IPI:IPI00867478 Ensembl:ENSBTAT00000015934
OMA:MTIKEEY Uniprot:F1MCF6
Length = 118
Score = 108 (43.1 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 32 QLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAKRQPKDFQS 91
+LE LEK + Y + ++EL+A LGL++RQ+++WF +RR K+RK ++Q + Q
Sbjct: 19 RLE-LEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKQQQQQPPQP 77
Query: 92 LVPA 95
PA
Sbjct: 78 PPPA 81
>ZFIN|ZDB-GENE-090313-51 [details] [associations]
symbol:phox2ba "paired-like homeobox 2ba"
species:7955 "Danio rerio" [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] InterPro:IPR001356 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 ZFIN:ZDB-GENE-090313-51 GO:GO:0005634 GO:GO:0043565
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
GeneTree:ENSGT00700000104256 eggNOG:NOG301263 EMBL:BX323984
IPI:IPI00923759 RefSeq:NP_001139175.1 UniGene:Dr.161702
Ensembl:ENSDART00000110517 Ensembl:ENSDART00000141795 GeneID:795258
CTD:795258 HOVERGEN:HBG106787 OMA:SWNESSS NextBio:20932169
Uniprot:B8A4X8
Length = 155
Score = 103 (41.3 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 25 RKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTA 82
R + T++QL+ LE+ +A YP R EL ++ L++ ++Q+WF +RR K RK A
Sbjct: 17 RTIFTSAQLKALERAFAHTQYPDIYTREELVQEIQLTEARVQVWFQNRRAKFRKQERA 74
Score = 48 (22.0 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 19/72 (26%), Positives = 28/72 (38%)
Query: 230 SETHEKAASSYPYGSPADGSTARNSSLRAGHPFMHGSEQISSGYGFPGQLP---NLNLLS 286
+E+ K SS + S S S + P + +Q S P +LP L L
Sbjct: 78 NESSSKTHSSPSHDSSETASATDPDSTQPSLPLIGDQKQDSRDRPPPEELPLLLGLTSLE 137
Query: 287 HQGRHSHLLPSV 298
Q + H +P V
Sbjct: 138 AQRQRGHQIPCV 149
>UNIPROTKB|F1P4T4 [details] [associations]
symbol:HOXD13 "Homeobox protein Hox-D13" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001356 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GeneTree:ENSGT00670000097683
IPI:IPI00598090 EMBL:AADN02020034 Ensembl:ENSGALT00000015092
OMA:CANDQTQ Uniprot:F1P4T4
Length = 111
Score = 106 (42.4 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 29 TASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRK 78
T QL+ LE YA+ + ++ R +SA LS+RQ+ +WF +RR+KD+K
Sbjct: 52 TKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKK 101
>UNIPROTKB|F6R243 [details] [associations]
symbol:CDX1 "Homeobox protein CDX-1" species:9031 "Gallus
gallus" [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0009952
"anterior/posterior pattern specification" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0060349 "bone
morphogenesis" evidence=IEA] InterPro:IPR000047 InterPro:IPR001356
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00031
PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389 GO:GO:0005634
GO:GO:0003700 Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024
SUPFAM:SSF46689 GO:GO:0000976 EMBL:AADN02028624 IPI:IPI00819151
ProteinModelPortal:F6R243 Ensembl:ENSGALT00000040457 Uniprot:F6R243
Length = 117
Score = 106 (42.4 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 32 QLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAKRQ 85
+LE LEK + Y + +AEL+A LGL++RQ+++WF +RR K+RK K Q
Sbjct: 18 RLE-LEKEFHYSRYITIRRKAELAAALGLTERQVKIWFQNRRAKERKVNKKKLQ 70
>UNIPROTKB|O75360 [details] [associations]
symbol:PROP1 "Homeobox protein prophet of Pit-1"
species:9606 "Homo sapiens" [GO:0000976 "transcription regulatory
region sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0001568 "blood
vessel development" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0008013 "beta-catenin binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0009953
"dorsal/ventral pattern formation" evidence=IEA] [GO:0016477 "cell
migration" evidence=IEA] [GO:0021979 "hypothalamus cell
differentiation" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048850 "hypophysis morphogenesis" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0060126 "somatotropin secreting cell differentiation"
evidence=IEA] [GO:0007417 "central nervous system development"
evidence=TAS] InterPro:IPR000047 InterPro:IPR001356
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00031
PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389 GO:GO:0043066
GO:GO:0016477 GO:GO:0045944 GO:GO:0007417 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0000122 GO:GO:0001568 GO:GO:0009953 GO:GO:0000976
GO:GO:0060070 Orphanet:95494 MIM:262600 Orphanet:226307
GO:GO:0021979 GO:GO:0060126 CTD:5626 eggNOG:NOG293463
HOGENOM:HOG000115706 HOVERGEN:HBG053691 KO:K09327 OrthoDB:EOG4BZN3X
GO:GO:0048850 OMA:TCFPHPY EMBL:AF076214 EMBL:AF076215 EMBL:AF041141
EMBL:AF041139 EMBL:AF041140 EMBL:AC136940 EMBL:BC069076
IPI:IPI00025308 RefSeq:NP_006252.3 UniGene:Hs.158301
ProteinModelPortal:O75360 SMR:O75360 STRING:O75360
PhosphoSite:O75360 PRIDE:O75360 Ensembl:ENST00000308304 GeneID:5626
KEGG:hsa:5626 UCSC:uc003mif.1 GeneCards:GC05M177419 HGNC:HGNC:9455
MIM:601538 neXtProt:NX_O75360 Orphanet:90695 PharmGKB:PA33808
InParanoid:O75360 PhylomeDB:O75360 GenomeRNAi:5626 NextBio:21868
Bgee:O75360 CleanEx:HS_PROP1 Genevestigator:O75360
GermOnline:ENSG00000175325 Uniprot:O75360
Length = 226
Score = 121 (47.7 bits), Expect = 0.00011, P = 0.00011
Identities = 35/98 (35%), Positives = 45/98 (45%)
Query: 32 QLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAKRQPKDFQS 91
QLE LE + YP R L+ GLS+ ++Q+WF +RR K RK + QP
Sbjct: 80 QLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQERSLLQP--LAH 137
Query: 92 LVPAGEKELAGSELVRGGMAVQRYYAVPMAPMLPFPLP 129
L PA A S + A YA P P+ FP P
Sbjct: 138 LSPA-----AFSSFLPESTACPYSYAAPPPPVTCFPHP 170
>UNIPROTKB|F1NHM4 [details] [associations]
symbol:CDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000047 InterPro:IPR001356 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027
PROSITE:PS50071 SMART:SM00389 GO:GO:0005634 GO:GO:0003700
Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689
GeneTree:ENSGT00530000063388 GO:GO:0000976 EMBL:AADN02013531
EMBL:AADN02013532 IPI:IPI00820756 Ensembl:ENSGALT00000039471
Uniprot:F1NHM4
Length = 60
Score = 103 (41.3 bits), Expect = 0.00015, P = 0.00015
Identities = 22/47 (46%), Positives = 34/47 (72%)
Query: 32 QLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRK 78
+LE LEK + Y + ++EL+A LGLS+RQ+++WF +RR K+RK
Sbjct: 13 RLE-LEKEFHCNRYITIRRKSELAANLGLSERQVKIWFQNRRAKERK 58
>UNIPROTKB|G3V567 [details] [associations]
symbol:PAX6 "Paired box protein Pax-6" species:9606 "Homo
sapiens" [GO:0000790 "nuclear chromatin" evidence=IEA] [GO:0000979
"RNA polymerase II core promoter sequence-specific DNA binding"
evidence=IEA] [GO:0000981 "sequence-specific DNA binding RNA
polymerase II transcription factor activity" evidence=IEA]
[GO:0001709 "cell fate determination" evidence=IEA] [GO:0001764
"neuron migration" evidence=IEA] [GO:0002052 "positive regulation
of neuroblast proliferation" evidence=IEA] [GO:0002088 "lens
development in camera-type eye" evidence=IEA] [GO:0003322
"pancreatic A cell development" evidence=IEA] [GO:0003680 "AT DNA
binding" evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0007224 "smoothened signaling pathway"
evidence=IEA] [GO:0007411 "axon guidance" evidence=IEA] [GO:0007435
"salivary gland morphogenesis" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0009950
"dorsal/ventral axis specification" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0021778 "oligodendrocyte
cell fate specification" evidence=IEA] [GO:0021796 "cerebral cortex
regionalization" evidence=IEA] [GO:0021797 "forebrain
anterior/posterior pattern specification" evidence=IEA] [GO:0021798
"forebrain dorsal/ventral pattern formation" evidence=IEA]
[GO:0021902 "commitment of neuronal cell to specific neuron type in
forebrain" evidence=IEA] [GO:0021905 "forebrain-midbrain boundary
formation" evidence=IEA] [GO:0021912 "regulation of transcription
from RNA polymerase II promoter involved in spinal cord motor
neuron fate specification" evidence=IEA] [GO:0021913 "regulation of
transcription from RNA polymerase II promoter involved in ventral
spinal cord interneuron specification" evidence=IEA] [GO:0021918
"regulation of transcription from RNA polymerase II promoter
involved in somatic motor neuron fate commitment" evidence=IEA]
[GO:0021983 "pituitary gland development" evidence=IEA] [GO:0023019
"signal transduction involved in regulation of gene expression"
evidence=IEA] [GO:0030216 "keratinocyte differentiation"
evidence=IEA] [GO:0030334 "regulation of cell migration"
evidence=IEA] [GO:0030858 "positive regulation of epithelial cell
differentiation" evidence=IEA] [GO:0030902 "hindbrain development"
evidence=IEA] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA] [GO:0032808 "lacrimal gland development"
evidence=IEA] [GO:0033365 "protein localization to organelle"
evidence=IEA] [GO:0035035 "histone acetyltransferase binding"
evidence=IEA] [GO:0042462 "eye photoreceptor cell development"
evidence=IEA] [GO:0042660 "positive regulation of cell fate
specification" evidence=IEA] [GO:0045665 "negative regulation of
neuron differentiation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0048505 "regulation of timing of cell
differentiation" evidence=IEA] [GO:0048596 "embryonic camera-type
eye morphogenesis" evidence=IEA] [GO:0048708 "astrocyte
differentiation" evidence=IEA] [GO:0050680 "negative regulation of
epithelial cell proliferation" evidence=IEA] [GO:0070410 "co-SMAD
binding" evidence=IEA] [GO:0070412 "R-SMAD binding" evidence=IEA]
[GO:0071837 "HMG box domain binding" evidence=IEA]
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389
GO:GO:0007411 GO:GO:0001764 GO:GO:0030216 GO:GO:0007435
GO:GO:0045944 GO:GO:0045665 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0030334 GO:GO:0000790 GO:GO:0006366 GO:GO:0000981
GO:GO:0033365 GO:GO:0021983 GO:GO:0050680 GO:GO:0000979
GO:GO:0030858 GO:GO:0007224 GO:GO:0001709 GO:GO:0002052
GO:GO:0009950 GO:GO:0021797 GO:GO:0048596 GO:GO:0023019
GO:GO:0002088 GO:GO:0042462 EMBL:Z83307 GO:GO:0021796 GO:GO:0021913
GO:GO:0032808 GO:GO:0021798 GO:GO:0048505 GO:GO:0021905
GO:GO:0048708 GO:GO:0021912 GO:GO:0021902 GO:GO:0021778
GO:GO:0003322 GO:GO:0021918 EMBL:Z95332 HGNC:HGNC:8620
ProteinModelPortal:G3V567 SMR:G3V567 Ensembl:ENST00000530373
ArrayExpress:G3V567 Bgee:G3V567 Uniprot:G3V567
Length = 128
Score = 103 (41.3 bits), Expect = 0.00015, P = 0.00015
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 29 TASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLK---DRKAPTAKRQ 85
T Q+E LEK + YP R L+A++ L + ++Q+WF +RR K + K +RQ
Sbjct: 17 TQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQ 76
Query: 86 PKDFQSLVP 94
+ S +P
Sbjct: 77 ASNTPSHIP 85
>RGD|3116 [details] [associations]
symbol:Msx2 "msh homeobox 2" species:10116 "Rattus norvegicus"
[GO:0000122 "negative regulation of transcription from RNA polymerase
II promoter" evidence=IEA;ISO] [GO:0000978 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding" evidence=IDA]
[GO:0000982 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0000989 "transcription factor binding transcription
factor activity" evidence=IEA;ISO] [GO:0001503 "ossification"
evidence=ISO] [GO:0001649 "osteoblast differentiation"
evidence=ISO;ISS] [GO:0002063 "chondrocyte development"
evidence=IEA;ISO] [GO:0002076 "osteoblast development"
evidence=IEA;IEP;ISO] [GO:0003148 "outflow tract septum
morphogenesis" evidence=IEA;ISO] [GO:0003151 "outflow tract
morphogenesis" evidence=ISO] [GO:0003198 "epithelial to mesenchymal
transition involved in endocardial cushion formation"
evidence=IEA;ISO] [GO:0003416 "endochondral bone growth"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005667 "transcription factor
complex" evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0008134 "transcription factor binding"
evidence=ISO] [GO:0008285 "negative regulation of cell proliferation"
evidence=IEA;ISO] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA;ISO] [GO:0023019 "signal transduction
involved in regulation of gene expression" evidence=IEA;ISO]
[GO:0030326 "embryonic limb morphogenesis" evidence=ISO] [GO:0030509
"BMP signaling pathway" evidence=ISO] [GO:0030513 "positive
regulation of BMP signaling pathway" evidence=IEA;ISO] [GO:0032792
"negative regulation of CREB transcription factor activity"
evidence=IEA;ISO] [GO:0035115 "embryonic forelimb morphogenesis"
evidence=IEA;ISO] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA;ISO] [GO:0035313 "wound healing, spreading of epidermal
cells" evidence=IEA;ISO] [GO:0035880 "embryonic nail plate
morphogenesis" evidence=IEA;ISO] [GO:0042060 "wound healing"
evidence=ISO] [GO:0042476 "odontogenesis" evidence=ISO] [GO:0042640
"anagen" evidence=IEA;ISO] [GO:0042733 "embryonic digit
morphogenesis" evidence=ISO] [GO:0042981 "regulation of apoptotic
process" evidence=ISO] [GO:0043065 "positive regulation of apoptotic
process" evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA;ISO] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA;ISO] [GO:0044212 "transcription regulatory
region DNA binding" evidence=IEA;ISO;ISS] [GO:0045599 "negative
regulation of fat cell differentiation" evidence=IEA;ISO] [GO:0045617
"negative regulation of keratinocyte differentiation"
evidence=IEA;ISO] [GO:0045669 "positive regulation of osteoblast
differentiation" evidence=IEA;ISO] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=ISO;ISS] [GO:0048863 "stem
cell differentiation" evidence=IEA;ISO] [GO:0051216 "cartilage
development" evidence=ISO;IMP] [GO:0051795 "positive regulation of
catagen" evidence=IEA;ISO] [GO:0060346 "bone trabecula formation"
evidence=IEA;ISO] [GO:0060349 "bone morphogenesis" evidence=ISO]
[GO:0060364 "frontal suture morphogenesis" evidence=IEA;ISO]
[GO:0060444 "branching involved in mammary gland duct morphogenesis"
evidence=IEA;ISO] [GO:0061180 "mammary gland epithelium development"
evidence=ISO] [GO:0061312 "BMP signaling pathway involved in heart
development" evidence=IEA;ISO] [GO:0070166 "enamel mineralization"
evidence=IEA;ISO] [GO:0071363 "cellular response to growth factor
stimulus" evidence=IEA;ISO] [GO:0071392 "cellular response to
estradiol stimulus" evidence=IEA;ISO] [GO:2000678 "negative
regulation of transcription regulatory region DNA binding"
evidence=IEA;ISO] InterPro:IPR000047 InterPro:IPR001356
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00031
PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389 RGD:3116 GO:GO:0005737
GO:GO:0045892 GO:GO:0043066 GO:GO:0008285 GO:GO:0071363 GO:GO:0009952
GO:GO:0048863 Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024
SUPFAM:SSF46689 GO:GO:0005667 GO:GO:0000978 GO:GO:0000122
GO:GO:0043065 GO:GO:0000982 GO:GO:0002076 GO:GO:0030513 GO:GO:0035313
GO:GO:0051216 GO:GO:0045669 GO:GO:0045599 GO:GO:0035116 GO:GO:0042640
GO:GO:0035115 GO:GO:0070166 GO:GO:0071392 GO:GO:0000989 GO:GO:0023019
GO:GO:0060444 GO:GO:0002063 GO:GO:0060346 GO:GO:0032792 GO:GO:0003416
GO:GO:0003148 GO:GO:0003198 GO:GO:2000678 GO:GO:0060364
eggNOG:NOG298790 HOGENOM:HOG000231922 OrthoDB:EOG4HQDK0 GO:GO:0045617
GO:GO:0061312 GO:GO:0035880 GO:GO:0051795 EMBL:U12514 IPI:IPI00231048
UniGene:Rn.10414 ProteinModelPortal:P52953 SMR:P52953 STRING:P52953
HOVERGEN:HBG066288 InParanoid:P52953 Genevestigator:P52953
GermOnline:ENSRNOG00000018355 Uniprot:P52953
Length = 139
Score = 103 (41.3 bits), Expect = 0.00015, P = 0.00015
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 29 TASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAKRQPKD 88
T SQL LE+ + + Y S A RAE S+ L L++ Q+++WF +RR K ++ A+ +
Sbjct: 22 TTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLK 81
Query: 89 FQS--LVPAG 96
+ ++P+G
Sbjct: 82 MAAKPMLPSG 91
>UNIPROTKB|P52953 [details] [associations]
symbol:Msx2 "Homeobox protein MSX-2" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0000989
"transcription factor binding transcription factor activity"
evidence=IEA] [GO:0002063 "chondrocyte development" evidence=IEA]
[GO:0003148 "outflow tract septum morphogenesis" evidence=IEA]
[GO:0003198 "epithelial to mesenchymal transition involved in
endocardial cushion formation" evidence=IEA] [GO:0003416
"endochondral bone growth" evidence=IEA] [GO:0005667 "transcription
factor complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA] [GO:0023019 "signal transduction
involved in regulation of gene expression" evidence=IEA]
[GO:0030513 "positive regulation of BMP signaling pathway"
evidence=IEA] [GO:0032792 "negative regulation of CREB
transcription factor activity" evidence=IEA] [GO:0035115 "embryonic
forelimb morphogenesis" evidence=IEA] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IEA] [GO:0035313 "wound healing,
spreading of epidermal cells" evidence=IEA] [GO:0035880 "embryonic
nail plate morphogenesis" evidence=IEA] [GO:0042640 "anagen"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045599 "negative regulation of fat cell
differentiation" evidence=IEA] [GO:0045617 "negative regulation of
keratinocyte differentiation" evidence=IEA] [GO:0045669 "positive
regulation of osteoblast differentiation" evidence=IEA] [GO:0048863
"stem cell differentiation" evidence=IEA] [GO:0051795 "positive
regulation of catagen" evidence=IEA] [GO:0060346 "bone trabecula
formation" evidence=IEA] [GO:0060364 "frontal suture morphogenesis"
evidence=IEA] [GO:0060444 "branching involved in mammary gland duct
morphogenesis" evidence=IEA] [GO:0061312 "BMP signaling pathway
involved in heart development" evidence=IEA] [GO:0070166 "enamel
mineralization" evidence=IEA] [GO:0071363 "cellular response to
growth factor stimulus" evidence=IEA] [GO:0071392 "cellular
response to estradiol stimulus" evidence=IEA] [GO:2000678 "negative
regulation of transcription regulatory region DNA binding"
evidence=IEA] InterPro:IPR000047 InterPro:IPR001356
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00031
PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389 RGD:3116
GO:GO:0005737 GO:GO:0045892 GO:GO:0043066 GO:GO:0008285
GO:GO:0071363 GO:GO:0009952 GO:GO:0048863 Gene3D:1.10.10.60
InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0000978 GO:GO:0000122 GO:GO:0043065 GO:GO:0000982
GO:GO:0002076 GO:GO:0030513 GO:GO:0035313 GO:GO:0051216
GO:GO:0045669 GO:GO:0045599 GO:GO:0035116 GO:GO:0042640
GO:GO:0035115 GO:GO:0070166 GO:GO:0071392 GO:GO:0000989
GO:GO:0023019 GO:GO:0060444 GO:GO:0002063 GO:GO:0060346
GO:GO:0032792 GO:GO:0003416 GO:GO:0003148 GO:GO:0003198
GO:GO:2000678 GO:GO:0060364 eggNOG:NOG298790 HOGENOM:HOG000231922
OrthoDB:EOG4HQDK0 GO:GO:0045617 GO:GO:0061312 GO:GO:0035880
GO:GO:0051795 EMBL:U12514 IPI:IPI00231048 UniGene:Rn.10414
ProteinModelPortal:P52953 SMR:P52953 STRING:P52953
HOVERGEN:HBG066288 InParanoid:P52953 Genevestigator:P52953
GermOnline:ENSRNOG00000018355 Uniprot:P52953
Length = 139
Score = 103 (41.3 bits), Expect = 0.00015, P = 0.00015
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 29 TASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAKRQPKD 88
T SQL LE+ + + Y S A RAE S+ L L++ Q+++WF +RR K ++ A+ +
Sbjct: 22 TTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLK 81
Query: 89 FQS--LVPAG 96
+ ++P+G
Sbjct: 82 MAAKPMLPSG 91
>UNIPROTKB|H0YJ33 [details] [associations]
symbol:CDX2 "Homeobox protein CDX-2" species:9606 "Homo
sapiens" [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000047 InterPro:IPR001356 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027
PROSITE:PS50071 SMART:SM00389 GO:GO:0005634 GO:GO:0003700
Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689
GO:GO:0000976 EMBL:AL591024 HGNC:HGNC:1806 Ensembl:ENST00000548877
Uniprot:H0YJ33
Length = 156
Score = 110 (43.8 bits), Expect = 0.00016, P = 0.00016
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 32 QLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAKRQPKDFQ 90
+LE LEK + Y + +AEL+A LGLS+RQ+++WF +RR K+RK K Q + Q
Sbjct: 41 RLE-LEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINKKKLQQQQQQ 98
>UNIPROTKB|Q28J15 [details] [associations]
symbol:hesx1 "Homeobox expressed in ES cells 1"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0030900
"forebrain development" evidence=ISS] [GO:0045664 "regulation of
neuron differentiation" evidence=ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0060061 "Spemann organizer formation" evidence=ISS]
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389
GO:GO:0005634 GO:GO:0045664 GO:GO:0043565 GO:GO:0030900
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000122
CTD:8820 eggNOG:NOG326168 HOGENOM:HOG000112889 HOVERGEN:HBG004226
KO:K09354 GO:GO:0060061 OrthoDB:EOG46T32J EMBL:CR760108
EMBL:BC159020 RefSeq:NP_001016712.1 UniGene:Str.27088
ProteinModelPortal:Q28J15 STRING:Q28J15 GeneID:549466
KEGG:xtr:549466 Xenbase:XB-GENE-483193 Bgee:Q28J15 Uniprot:Q28J15
Length = 186
Score = 116 (45.9 bits), Expect = 0.00017, P = 0.00017
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 29 TASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKA 79
T SQ+EILE + V SYP +R EL+ +L L + ++Q+WF +RR K +++
Sbjct: 117 TRSQIEILENVFRVNSYPGIDIREELAGKLALDEDRIQIWFQNRRAKLKRS 167
>UNIPROTKB|Q91898 [details] [associations]
symbol:hesx1-b "Homeobox expressed in ES cells 1-B"
species:8355 "Xenopus laevis" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0030900 "forebrain development" evidence=IMP]
[GO:0045664 "regulation of neuron differentiation" evidence=IMP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0060061 "Spemann organizer formation"
evidence=IMP] InterPro:IPR001356 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 GO:GO:0045664 GO:GO:0043565
GO:GO:0030900 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000122 HOVERGEN:HBG004226 KO:K09354 GO:GO:0060061
EMBL:X60099 EMBL:X70282 PIR:S31859 RefSeq:NP_001156042.1
UniGene:Xl.131 ProteinModelPortal:Q91898 IntAct:Q91898
GeneID:397950 KEGG:xla:397950 CTD:397950 Xenbase:XB-GENE-864952
Uniprot:Q91898
Length = 187
Score = 116 (45.9 bits), Expect = 0.00017, P = 0.00017
Identities = 22/51 (43%), Positives = 36/51 (70%)
Query: 29 TASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKA 79
T SQ+EILE + V SYP +R EL+++L L + ++Q+WF +RR K +++
Sbjct: 118 TRSQIEILENVFRVNSYPGIDVREELASKLALDEDRIQIWFQNRRAKLKRS 168
>UNIPROTKB|G3V2N9 [details] [associations]
symbol:NOBOX "Homeobox protein NOBOX" species:9606 "Homo
sapiens" [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000047 InterPro:IPR001356 InterPro:IPR009057
Pfam:PF00046 PRINTS:PR00031 PROSITE:PS50071 SMART:SM00389
GO:GO:0005634 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000976 EMBL:AC004534 HGNC:HGNC:22448
ProteinModelPortal:G3V2N9 SMR:G3V2N9 Ensembl:ENST00000555556
ArrayExpress:G3V2N9 Bgee:G3V2N9 Uniprot:G3V2N9
Length = 166
Score = 112 (44.5 bits), Expect = 0.00022, P = 0.00022
Identities = 33/110 (30%), Positives = 56/110 (50%)
Query: 25 RKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAK- 83
R + + QLE LEK + + YP R E++ +G++ +++ +WF +RR K RK
Sbjct: 65 RTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVTPQRIMVWFQNRRAKWRKMEKLNG 124
Query: 84 RQPKDFQSLV-PAGEKELAGSELVRGGMAVQRYYAVPMAPMLPFPLPQRN 132
++ KD + PA + + +E++ AVPM P P P PQ +
Sbjct: 125 KESKDNPAAPGPASSQCSSAAEILP---------AVPMEPK-PDPFPQES 164
>UNIPROTKB|I3LF97 [details] [associations]
symbol:I3LF97 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0060847
"endothelial cell fate specification" evidence=IEA] [GO:0060442
"branching involved in prostate gland morphogenesis" evidence=IEA]
[GO:0048844 "artery morphogenesis" evidence=IEA] [GO:0048839 "inner
ear development" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045840 "positive regulation of mitosis" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0035115 "embryonic forelimb
morphogenesis" evidence=IEA] [GO:0030539 "male genitalia
development" evidence=IEA] [GO:0030510 "regulation of BMP signaling
pathway" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003281
"ventricular septum development" evidence=IEA] [GO:0001894 "tissue
homeostasis" evidence=IEA] [GO:0001886 "endothelial cell
morphogenesis" evidence=IEA] [GO:0001570 "vasculogenesis"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] InterPro:IPR001356 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689
GeneTree:ENSGT00670000097683 Ensembl:ENSSSCT00000022309
Uniprot:I3LF97
Length = 100
Score = 101 (40.6 bits), Expect = 0.00024, P = 0.00024
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 29 TASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRK 78
T QL+ LE+ YA + ++ R +SA LS+RQ+ +WF +RR+K++K
Sbjct: 42 TKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 91
>UNIPROTKB|Q9UBR4 [details] [associations]
symbol:LHX3 "LIM/homeobox protein Lhx3" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000988 "protein binding transcription factor
activity" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0008045 "motor neuron axon guidance"
evidence=IEA] [GO:0021520 "spinal cord motor neuron cell fate
specification" evidence=IEA] [GO:0021521 "ventral spinal cord
interneuron specification" evidence=IEA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IEA] [GO:0021527 "spinal
cord association neuron differentiation" evidence=IEA] [GO:0021983
"pituitary gland development" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048839 "inner ear development"
evidence=IEP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0005634 "nucleus" evidence=TAS]
[GO:0009887 "organ morphogenesis" evidence=TAS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0045893 GO:GO:0043066 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 EMBL:CH471090 GO:GO:0045944
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0005667 GO:GO:0009887 Gene3D:2.10.110.10 GO:GO:0008045
GO:GO:0021983 GO:GO:0048839 GO:GO:0021527 EMBL:AL138781
GO:GO:0000988 GO:GO:0021521 Orphanet:226307 eggNOG:NOG275246
HOGENOM:HOG000231629 KO:K09374 GO:GO:0021520 HOVERGEN:HBG006263
CTD:8022 OMA:PLCAGCN EMBL:AF156888 EMBL:AF156889 EMBL:AH008761
EMBL:AF096169 EMBL:AF214637 EMBL:AF367089 EMBL:AF367085
EMBL:AF367086 EMBL:AF367087 EMBL:AF367088 IPI:IPI00002747
IPI:IPI00220680 RefSeq:NP_055379.1 RefSeq:NP_835258.1
UniGene:Hs.148427 ProteinModelPortal:Q9UBR4 SMR:Q9UBR4
STRING:Q9UBR4 PhosphoSite:Q9UBR4 DMDM:12643415 PRIDE:Q9UBR4
DNASU:8022 Ensembl:ENST00000371746 Ensembl:ENST00000371748
GeneID:8022 KEGG:hsa:8022 UCSC:uc004cha.3 GeneCards:GC09M139088
HGNC:HGNC:6595 MIM:221750 MIM:600577 neXtProt:NX_Q9UBR4
Orphanet:231720 PharmGKB:PA30366 OrthoDB:EOG4SBDZ0 ChiTaRS:LHX3
GenomeRNAi:8022 NextBio:30588 ArrayExpress:Q9UBR4 Bgee:Q9UBR4
CleanEx:HS_LHX3 Genevestigator:Q9UBR4 GermOnline:ENSG00000107187
GO:GO:0021526 Uniprot:Q9UBR4
Length = 397
Score = 114 (45.2 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 43/159 (27%), Positives = 71/159 (44%)
Query: 29 TASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPT-AKRQP- 86
TA QLE L+ Y P+ +R +LS++ GL R +Q+WF +RR K+++ A RQ
Sbjct: 165 TAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRW 224
Query: 87 -KDFQSLVPAGEKELAGSELVRGGMAVQRYYAVPMAPMLPFPLPQRNIV-----EMRVIA 140
+ F+++ + + + V+ G + P P L P + + +
Sbjct: 225 GQYFRNMKRSRGGSKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYGSLGEPTQALG 284
Query: 141 FVESQLGEPLREDGPILGVE-FDSLPPDA-FGRPIGPAA 177
LG E G + G E + L P + +G P PAA
Sbjct: 285 RPSGALGNFSLEHGGLAGPEQYRELRPGSPYGVPPSPAA 323
Score = 53 (23.7 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 23/77 (29%), Positives = 29/77 (37%)
Query: 231 ETHEKAASSYPYGSPADGSTARNSSLRAGHPFMHGS--EQISSGY---GFPGQLPNLNLL 285
E + + PYG P S A SL P + S G G PG P + +L
Sbjct: 304 EQYRELRPGSPYGVPP--SPAAPQSLPGPQPLLSSLVYPDTSLGLVPSGAPGGPPPMRVL 361
Query: 286 SHQGRHSHLLPSVSGEY 302
+ G S L SG Y
Sbjct: 362 AGNGPSSDLSTGSSGGY 378
>ZFIN|ZDB-GENE-040628-4 [details] [associations]
symbol:bsx "brain specific homeobox" species:7955
"Danio rerio" [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0007420 "brain development" evidence=ISS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389
ZFIN:ZDB-GENE-040628-4 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689
GeneTree:ENSGT00700000104097 EMBL:BX120005 IPI:IPI00931915
Ensembl:ENSDART00000090003 Uniprot:F1R6K5
Length = 245
Score = 118 (46.6 bits), Expect = 0.00031, P = 0.00031
Identities = 35/100 (35%), Positives = 51/100 (51%)
Query: 25 RKMKTA---SQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKD----R 77
RK +T SQL LEK + ++ Y S R EL+ L LS+ Q++ WF +RR+K R
Sbjct: 124 RKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQLR 183
Query: 78 KAPTAKRQPKDF-QSLVPAGEKELAGSELV-RGGMAVQRY 115
K ++ P D +SL E E+ + GM+ RY
Sbjct: 184 KTQDDQKTPNDVDRSLENTSESEMHEKNTDGKNGMSPDRY 223
>UNIPROTKB|Q3C1V8 [details] [associations]
symbol:BSX "Brain-specific homeobox protein homolog"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0007626 "locomotory behavior"
evidence=IEA] [GO:0042755 "eating behavior" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0060056 "mammary gland
involution" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389
GO:GO:0005634 GO:GO:0005737 GO:GO:0043565 GO:GO:0045944
GO:GO:0042755 GO:GO:0007626 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689
GO:GO:0005667 GO:GO:0060056 HOGENOM:HOG000231924 CTD:390259
eggNOG:NOG242366 HOVERGEN:HBG050738 OMA:LHKPEHH OrthoDB:EOG4KKZ41
EMBL:AP003040 EMBL:AB231738 IPI:IPI00847613 RefSeq:NP_001091639.1
UniGene:Hs.449687 ProteinModelPortal:Q3C1V8 SMR:Q3C1V8
STRING:Q3C1V8 PhosphoSite:Q3C1V8 DMDM:156630463 PRIDE:Q3C1V8
Ensembl:ENST00000343035 GeneID:390259 KEGG:hsa:390259
UCSC:uc010rzs.2 GeneCards:GC11M122848 HGNC:HGNC:20450 HPA:HPA015654
MIM:611074 neXtProt:NX_Q3C1V8 PharmGKB:PA162377618
InParanoid:Q3C1V8 PhylomeDB:Q3C1V8 GenomeRNAi:390259 NextBio:103586
Bgee:Q3C1V8 CleanEx:HS_BSX Genevestigator:Q3C1V8 Uniprot:Q3C1V8
Length = 233
Score = 117 (46.2 bits), Expect = 0.00034, P = 0.00034
Identities = 38/109 (34%), Positives = 54/109 (49%)
Query: 25 RKMKTA---SQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPT 81
RK +T SQL LEK + ++ Y S R EL+ L LS+ Q++ WF +RR+K +K
Sbjct: 111 RKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQ-- 168
Query: 82 AKRQPKDFQSLVPAGEKELAGSELVRGGMAVQRYYAVPMAPMLPFPLPQ 130
R+ +D + P G + GS RG A A P PF L +
Sbjct: 169 -LRKSQD-EPKAPDGPESPEGSP--RGSEAATAAEARLSLPAGPFVLTE 213
>UNIPROTKB|F1P4U7 [details] [associations]
symbol:HOXD11 "Homeobox protein Hox-D11" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001656 "metanephros development" evidence=IEA]
[GO:0001658 "branching involved in ureteric bud morphogenesis"
evidence=IEA] [GO:0001759 "organ induction" evidence=IEA]
[GO:0009952 "anterior/posterior pattern specification"
evidence=IEA] [GO:0009953 "dorsal/ventral pattern formation"
evidence=IEA] [GO:0009954 "proximal/distal pattern formation"
evidence=IEA] [GO:0010720 "positive regulation of cell development"
evidence=IEA] [GO:0032332 "positive regulation of chondrocyte
differentiation" evidence=IEA] [GO:0042733 "embryonic digit
morphogenesis" evidence=IEA] [GO:0048589 "developmental growth"
evidence=IEA] [GO:0060272 "embryonic skeletal joint morphogenesis"
evidence=IEA] [GO:0060351 "cartilage development involved in
endochondral bone morphogenesis" evidence=IEA] InterPro:IPR001356
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS50071 SMART:SM00389 GO:GO:0005634 GO:GO:0043565
GO:GO:0003700 Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024
SUPFAM:SSF46689 GO:GO:0032332 GO:GO:0048589 GO:GO:0001759
GO:GO:0010720 GeneTree:ENSGT00700000104263 IPI:IPI00583692
EMBL:AADN02020032 Ensembl:ENSGALT00000015085 Uniprot:F1P4U7
Length = 109
Score = 99 (39.9 bits), Expect = 0.00039, P = 0.00039
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 29 TASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRK 78
T Q+ LE+ + Y ++ R +LS L L+DRQ+++WF +RR+K++K
Sbjct: 45 TKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 94
>UNIPROTKB|F1S9I5 [details] [associations]
symbol:HLX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0048557 "embryonic
digestive tract morphogenesis" evidence=IEA] [GO:0048484 "enteric
nervous system development" evidence=IEA] [GO:0046622 "positive
regulation of organ growth" evidence=IEA] [GO:0045629 "negative
regulation of T-helper 2 cell differentiation" evidence=IEA]
[GO:0045627 "positive regulation of T-helper 1 cell
differentiation" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007519 "skeletal muscle
tissue development" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0000976
"transcription regulatory region sequence-specific DNA binding"
evidence=IEA] InterPro:IPR000047 InterPro:IPR001356
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00031
PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389 GO:GO:0005634
GO:GO:0008284 GO:GO:0001889 GO:GO:0003700 Gene3D:1.10.10.60
InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689 GO:GO:0046622
GO:GO:0000976 GO:GO:0048484 GeneTree:ENSGT00700000104097
GO:GO:0045629 GO:GO:0007519 GO:GO:0045627 GO:GO:0048557 OMA:ESTQAPL
EMBL:CU855622 Ensembl:ENSSSCT00000011848 Uniprot:F1S9I5
Length = 245
Score = 117 (46.2 bits), Expect = 0.00040, P = 0.00040
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 36 LEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAKRQPKDFQSLVPA 95
LEK + ++ Y ++ R +L+A LGL+D Q+++WF +RR+K R + A+ Q KD A
Sbjct: 49 LEKRFEIQKYVTKPDRKQLAAMLGLTDAQVKVWFQNRRMKWRHSKEAQAQ-KDKDK--EA 105
Query: 96 GEKELAGSELVRG 108
GEK G+ G
Sbjct: 106 GEKPSGGAVAADG 118
>UNIPROTKB|F8VVX3 [details] [associations]
symbol:HLX "H2.0-like homeobox protein" species:9606 "Homo
sapiens" [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000047 InterPro:IPR001356 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027
PROSITE:PS50071 SMART:SM00389 GO:GO:0005634 GO:GO:0003700
Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689
GO:GO:0000976 EMBL:AL445423 HGNC:HGNC:4978 IPI:IPI00643042
ProteinModelPortal:F8VVX3 SMR:F8VVX3 Ensembl:ENST00000549319
OMA:ESTQAPL ArrayExpress:F8VVX3 Bgee:F8VVX3 Uniprot:F8VVX3
Length = 274
Score = 118 (46.6 bits), Expect = 0.00041, P = 0.00041
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 36 LEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAKRQPKDFQSLVPA 95
LEK + ++ Y ++ R +L+A LGL+D Q+++WF +RR+K R + A+ Q KD A
Sbjct: 77 LEKRFEIQKYVTKPDRKQLAAMLGLTDAQVKVWFQNRRMKWRHSKEAQAQ-KDKDK--EA 133
Query: 96 GEKELAGSELVRG 108
GEK G+ G
Sbjct: 134 GEKPSGGAPAADG 146
>RGD|1588601 [details] [associations]
symbol:Hoxd3 "homeo box D3" species:10116 "Rattus norvegicus"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISO]
[GO:0007160 "cell-matrix adhesion" evidence=IEA;ISO] [GO:0007219
"Notch signaling pathway" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0009952
"anterior/posterior pattern specification" evidence=IEA;ISO]
[GO:0010628 "positive regulation of gene expression"
evidence=IEA;ISO] [GO:0021615 "glossopharyngeal nerve
morphogenesis" evidence=IEA;ISO] [GO:0030878 "thyroid gland
development" evidence=IEA;ISO] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0045666 "positive regulation of neuron
differentiation" evidence=IEA;ISO] [GO:0048704 "embryonic skeletal
system morphogenesis" evidence=IEA;ISO] [GO:0051216 "cartilage
development" evidence=IEA;ISO] InterPro:IPR001356
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00032 PROSITE:PS50071 SMART:SM00389 RGD:1588601
GO:GO:0007275 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024
SUPFAM:SSF46689 eggNOG:NOG284589 EMBL:M37569 IPI:IPI00195537
PIR:E43559 UniGene:Rn.223085 ProteinModelPortal:P18867 SMR:P18867
STRING:P18867 UCSC:RGD:1588601 HOVERGEN:HBG052632
Genevestigator:P18867 Uniprot:P18867
Length = 114
Score = 98 (39.6 bits), Expect = 0.00050, P = 0.00050
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 29 TASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAK 83
T++QL LEK + Y R E++ L L++RQ+++WF +RR+K +K AK
Sbjct: 19 TSAQLVELEKEFHFNRYLCRRRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAK 73
>RGD|1595784 [details] [associations]
symbol:Hoxc9 "homeobox C9" species:10116 "Rattus norvegicus"
[GO:0000976 "transcription regulatory region sequence-specific DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA;ISO] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0048704 "embryonic skeletal system
morphogenesis" evidence=IEA;ISO] [GO:0048706 "embryonic skeletal
system development" evidence=ISO] InterPro:IPR000047
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027 PROSITE:PS00032
PROSITE:PS50071 SMART:SM00389 RGD:1595784 GO:GO:0007275
GO:GO:0005634 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689 GO:GO:0000976
eggNOG:NOG314669 EMBL:S76301 EMBL:M37568 IPI:IPI01016344 PIR:D43559
UniGene:Rn.91646 ProteinModelPortal:P18866 SMR:P18866 STRING:P18866
UCSC:RGD:1595784 HOVERGEN:HBG107057 Genevestigator:P18866
Uniprot:P18866
Length = 108
Score = 98 (39.6 bits), Expect = 0.00050, P = 0.00050
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 36 LEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAKRQP--KDFQSLV 93
LEK + Y + R E+S LGL++RQ+++WF +RR+K +K + P +D + +
Sbjct: 30 LEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKLPGARDEEKVE 89
Query: 94 PAGEKE 99
G +E
Sbjct: 90 EEGNEE 95
>UNIPROTKB|P18866 [details] [associations]
symbol:Hoxc8 "Homeobox protein Hox-C8" species:10116
"Rattus norvegicus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000047 InterPro:IPR001356
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00031
PROSITE:PS00027 PROSITE:PS00032 PROSITE:PS50071 SMART:SM00389
RGD:1595784 GO:GO:0007275 GO:GO:0005634 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689
GO:GO:0000976 eggNOG:NOG314669 EMBL:S76301 EMBL:M37568
IPI:IPI01016344 PIR:D43559 UniGene:Rn.91646
ProteinModelPortal:P18866 SMR:P18866 STRING:P18866 UCSC:RGD:1595784
HOVERGEN:HBG107057 Genevestigator:P18866 Uniprot:P18866
Length = 108
Score = 98 (39.6 bits), Expect = 0.00050, P = 0.00050
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 36 LEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAKRQP--KDFQSLV 93
LEK + Y + R E+S LGL++RQ+++WF +RR+K +K + P +D + +
Sbjct: 30 LEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKLPGARDEEKVE 89
Query: 94 PAGEKE 99
G +E
Sbjct: 90 EEGNEE 95
>UNIPROTKB|P18867 [details] [associations]
symbol:Hoxd3 "Homeobox protein Hox-D3" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] InterPro:IPR001356
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00032 PROSITE:PS50071 SMART:SM00389 RGD:1588601
GO:GO:0007275 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024
SUPFAM:SSF46689 eggNOG:NOG284589 EMBL:M37569 IPI:IPI00195537
PIR:E43559 UniGene:Rn.223085 ProteinModelPortal:P18867 SMR:P18867
STRING:P18867 UCSC:RGD:1588601 HOVERGEN:HBG052632
Genevestigator:P18867 Uniprot:P18867
Length = 114
Score = 98 (39.6 bits), Expect = 0.00050, P = 0.00050
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 29 TASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAK 83
T++QL LEK + Y R E++ L L++RQ+++WF +RR+K +K AK
Sbjct: 19 TSAQLVELEKEFHFNRYLCRRRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAK 73
>UNIPROTKB|P14652 [details] [associations]
symbol:HOXB2 "Homeobox protein Hox-B2" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0002011 "morphogenesis of an epithelial sheet"
evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA] [GO:0009953 "dorsal/ventral pattern
formation" evidence=IEA] [GO:0021569 "rhombomere 3 development"
evidence=IEA] [GO:0021570 "rhombomere 4 development" evidence=IEA]
[GO:0021612 "facial nerve structural organization" evidence=IEA]
[GO:0048704 "embryonic skeletal system morphogenesis" evidence=IEA]
[GO:0048857 "neural nucleus development" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0008015 "blood circulation"
evidence=TAS] InterPro:IPR001356 InterPro:IPR001827
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00032 PROSITE:PS50071 SMART:SM00389 GO:GO:0007275
GO:GO:0005634 GO:GO:0009952 GO:GO:0008015 GO:GO:0043565
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 InterPro:IPR020479
PRINTS:PR00024 SUPFAM:SSF46689 GO:GO:0009953 GO:GO:0048704
GO:GO:0002011 GO:GO:0021612 KO:K09302 GO:GO:0021569 GO:GO:0021570
HOGENOM:HOG000063664 HOVERGEN:HBG006088 EMBL:X16665 EMBL:BC074805
EMBL:BC074806 EMBL:X16176 EMBL:X14571 EMBL:X78978 IPI:IPI00027261
PIR:S07542 RefSeq:NP_002136.1 UniGene:Hs.514289
ProteinModelPortal:P14652 SMR:P14652 IntAct:P14652 STRING:P14652
PhosphoSite:P14652 DMDM:123270 PRIDE:P14652 DNASU:3212
Ensembl:ENST00000330070 GeneID:3212 KEGG:hsa:3212 UCSC:uc002inm.3
CTD:3212 GeneCards:GC17M046620 HGNC:HGNC:5113 MIM:142967
neXtProt:NX_P14652 PharmGKB:PA29389 eggNOG:NOG295272
InParanoid:P14652 OMA:RAAWEAC OrthoDB:EOG4QC167 PhylomeDB:P14652
GenomeRNAi:3212 NextBio:12780 ArrayExpress:P14652 Bgee:P14652
CleanEx:HS_HOXB2 Genevestigator:P14652 GermOnline:ENSG00000173917
GO:GO:0048857 Uniprot:P14652
Length = 356
Score = 119 (46.9 bits), Expect = 0.00055, P = 0.00055
Identities = 50/163 (30%), Positives = 77/163 (47%)
Query: 25 RKMKTA---SQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPT 81
R+++TA +QL LEK + Y R E++A L L++RQ+++WF +RR+K K T
Sbjct: 144 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMK-HKRQT 202
Query: 82 AKRQPKDFQSLVPAGEKELA--GSELVR--GGMAVQR--YYAVPMAP-MLPFPLP-QRNI 133
R+P D + P +++ E GG + R + A P ++P L
Sbjct: 203 QHREPPDGEPACPGALEDICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGALSADPRP 262
Query: 134 VEMRVIAFVESQLGEPLREDGPILGVEFDSLPPDAF-GRPIGP 175
+ +R+ S G LR G G+E LP D F GR P
Sbjct: 263 LAVRLEGAGASSPGCALRGAG---GLEPGPLPEDVFSGRQDSP 302
>UNIPROTKB|O97581 [details] [associations]
symbol:LHX3 "LIM/homeobox protein Lhx3" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0045893 GO:GO:0046872
GO:GO:0003677 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
HOVERGEN:HBG006263 EMBL:AF063245 UniGene:Ssc.26829
ProteinModelPortal:O97581 SMR:O97581 Uniprot:O97581
Length = 383
Score = 104 (41.7 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 29 TASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRK 78
TA QLE L+ Y P+ +R +LS++ GL R +Q+WF +RR K+++
Sbjct: 150 TAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKR 199
Score = 60 (26.2 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 23/77 (29%), Positives = 31/77 (40%)
Query: 231 ETHEKAASSYPYGSPADGSTARNSSLRAGHPFMHGSEQISSGYGF-----PGQLPNLNLL 285
E + + S PYG P+ S A SL P + +G G PG P + +L
Sbjct: 290 EQYGELRPSSPYGVPS--SPAALQSLPGPQPLLSSLVYPEAGLGLVPAGPPGGPPPMRVL 347
Query: 286 SHQGRHSHLLPSVSGEY 302
+ G S L SG Y
Sbjct: 348 AGNGPSSDLSTGSSGGY 364
>UNIPROTKB|F1NPY3 [details] [associations]
symbol:F1NPY3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001541 "ovarian follicle development"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR000047 InterPro:IPR001356
InterPro:IPR009057 Pfam:PF00046 PRINTS:PR00031 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 GO:GO:0045944 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000976
GeneTree:ENSGT00650000093445 EMBL:AADN02065142 EMBL:AADN02065141
IPI:IPI00584945 Ensembl:ENSGALT00000030041 OMA:GMIASCE
Uniprot:F1NPY3
Length = 204
Score = 113 (44.8 bits), Expect = 0.00062, P = 0.00062
Identities = 27/71 (38%), Positives = 42/71 (59%)
Query: 25 RKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAKR 84
R +A QLE LEK + + YP R E++A +G++ +++ +WF +RR K RK T K
Sbjct: 13 RTFYSAEQLEELEKVFQEDRYPDNEKRREIAAVIGVTPQRIMVWFQNRRAKWRK--TEKS 70
Query: 85 QPKDFQSLVPA 95
K ++ VPA
Sbjct: 71 NAKGSKN-VPA 80
>UNIPROTKB|Q02814 [details] [associations]
symbol:CHOX-CAD2 "Homeobox protein CHOX-CAD2" species:9031
"Gallus gallus" [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000047 InterPro:IPR001356 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027
PROSITE:PS50071 SMART:SM00389 GO:GO:0007275 GO:GO:0005634
GO:GO:0003700 Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024
SUPFAM:SSF46689 GO:GO:0000976 eggNOG:NOG291290 OrthoDB:EOG42FSK7
EMBL:L06621 IPI:IPI00576916 PIR:PC1228 ProteinModelPortal:Q02814
SMR:Q02814 InParanoid:Q02814 Uniprot:Q02814
Length = 60
Score = 97 (39.2 bits), Expect = 0.00064, P = 0.00064
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 32 QLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRK 78
+LE LEK + Y + ++EL+ LGLS+RQ++ WF +RR K+RK
Sbjct: 13 RLE-LEKEFHCNRYITIRRKSELAVNLGLSERQVKSWFQNRRAKERK 58
>UNIPROTKB|G3X7M1 [details] [associations]
symbol:SHOX "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] InterPro:IPR000047
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR003654 Pfam:PF03826 PROSITE:PS50803
GO:GO:0000976 GeneTree:ENSGT00700000104279 KO:K09331 CTD:6473
OMA:SNHCPVH EMBL:DAAA02005893 RefSeq:NP_001178475.1
UniGene:Bt.106108 Ensembl:ENSBTAT00000038279 GeneID:615159
KEGG:bta:615159 NextBio:20899478 Uniprot:G3X7M1
Length = 306
Score = 117 (46.2 bits), Expect = 0.00068, P = 0.00068
Identities = 49/166 (29%), Positives = 68/166 (40%)
Query: 29 TASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAKRQPKD 88
T QL LE+ + YP +R ELS +LGLS+ ++Q+WF +RR K RK + Q +
Sbjct: 127 TLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQ---ENQMHN 183
Query: 89 FQSLVPAGEKELAG-SELVRGGMAVQRYYAV--PMAPMLPFPLPQRNIVEMRVIAFVESQ 145
L A + + V G + V P LP P Q + ++ +A
Sbjct: 184 SVILGTASHLDACRVAPYVNMGALRMPFQQVARPDCAALP-PQVQAQL-QLEGVAHAHPH 241
Query: 146 LGEPLREDGPILGVEFDSLPPDAFGRPIGPAAMGHQKHSVRPLEAK 191
L L P L PP FG PI A +V AK
Sbjct: 242 LHPHLAAHAPYL-----MFPPPPFGLPIASLAESASAAAVVAAAAK 282
>UNIPROTKB|E2QX72 [details] [associations]
symbol:PAX3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] InterPro:IPR001356 InterPro:IPR001523
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 Pfam:PF00292
PRINTS:PR00027 PROSITE:PS00027 PROSITE:PS00034 PROSITE:PS50071
PROSITE:PS51057 SMART:SM00351 SMART:SM00389 GO:GO:0007275
GO:GO:0005634 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GeneTree:ENSGT00680000099553 InterPro:IPR022106 Pfam:PF12360
OMA:VHQSTLP EMBL:AAEX03018179 EMBL:AAEX03018180 EMBL:AAEX03018181
Ensembl:ENSCAFT00000025445 Uniprot:E2QX72
Length = 485
Score = 120 (47.3 bits), Expect = 0.00071, P = 0.00071
Identities = 46/158 (29%), Positives = 68/158 (43%)
Query: 29 TASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAKRQPKD 88
TA QLE LE+ + YP R EL+ + L++ ++Q+WF +RR + RK A Q
Sbjct: 228 TAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGAN-QLMA 286
Query: 89 FQSLVPAGEKELAGSELVRGGMAVQRYY--AVPMA---PML----PFPLPQRNIVEMRVI 139
F L+P G A L ++ Y A+P A P P PLP + + +
Sbjct: 287 FNHLIPGGFPPTAMPTLPTYQLSETSYQPTAIPQAVSDPSSTVHRPQPLPPSTVHQSTIP 346
Query: 140 AFVESQLGEPLREDGPILGVEFDS-LPPDAFGRPIGPA 176
+ +S L DS +PP P+ PA
Sbjct: 347 SNPDSSSAYCLPSTRHGFSSYTDSFVPPSGPSNPMNPA 384
>UNIPROTKB|H0YJ32 [details] [associations]
symbol:SHOX2 "Short stature homeobox protein 2"
species:9606 "Homo sapiens" [GO:0000976 "transcription regulatory
region sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000047 InterPro:IPR001356 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027
PROSITE:PS50071 SMART:SM00389 GO:GO:0005634 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000976 HGNC:HGNC:10854
EMBL:AC112502 Ensembl:ENST00000555977 Uniprot:H0YJ32
Length = 178
Score = 110 (43.8 bits), Expect = 0.00073, P = 0.00073
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 29 TASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRK 78
T QL LE+ + YP +R ELS +LGLS+ ++Q+WF +RR K RK
Sbjct: 52 TLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRK 101
>UNIPROTKB|F1NL45 [details] [associations]
symbol:MIXL1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389
GO:GO:0005634 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GeneTree:ENSGT00700000104128 EMBL:AADN02012178
EMBL:AADN02012179 IPI:IPI00590510 Ensembl:ENSGALT00000038807
ArrayExpress:F1NL45 Uniprot:F1NL45
Length = 116
Score = 96 (38.9 bits), Expect = 0.00082, P = 0.00082
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 29 TASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAKRQPKD 88
TA+QLE LE + YP LR L+ + + ++Q+WF +RR K R+ R P+
Sbjct: 11 TAAQLETLELVFQDTMYPDIYLRERLADATQIPESRIQVWFQNRRAKSRRQRGPPR-PRR 69
Query: 89 FQSLVPAG 96
S + AG
Sbjct: 70 LPSPLTAG 77
>UNIPROTKB|H9L184 [details] [associations]
symbol:Gga.48067 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0002011
"morphogenesis of an epithelial sheet" evidence=IEA] [GO:0008283
"cell proliferation" evidence=IEA] [GO:0009952 "anterior/posterior
pattern specification" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0048103 "somatic stem cell division"
evidence=IEA] [GO:0048536 "spleen development" evidence=IEA]
[GO:0048539 "bone marrow development" evidence=IEA] [GO:0048704
"embryonic skeletal system morphogenesis" evidence=IEA] [GO:0060216
"definitive hemopoiesis" evidence=IEA] [GO:0060218 "hematopoietic
stem cell differentiation" evidence=IEA] [GO:2000738 "positive
regulation of stem cell differentiation" evidence=IEA]
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS50071 SMART:SM00389
GO:GO:0005634 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.60
InterPro:IPR020479 PRINTS:PR00024 SUPFAM:SSF46689
GeneTree:ENSGT00700000104090 EMBL:AADN02014570
Ensembl:ENSGALT00000029853 OMA:MANTIPP Uniprot:H9L184
Length = 102
Score = 96 (38.9 bits), Expect = 0.00082, P = 0.00082
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 25 RKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLK---DRKAPT 81
R T Q+ LEK + Y + R E++ L LS+RQ+++WF +RR+K D K P
Sbjct: 14 RTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHSLCLSERQIKIWFQNRRMKWKKDHKLPN 73
Query: 82 AK 83
K
Sbjct: 74 TK 75
>UNIPROTKB|E2R2R4 [details] [associations]
symbol:HLX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048557 "embryonic digestive tract
morphogenesis" evidence=IEA] [GO:0048484 "enteric nervous system
development" evidence=IEA] [GO:0046622 "positive regulation of
organ growth" evidence=IEA] [GO:0045629 "negative regulation of
T-helper 2 cell differentiation" evidence=IEA] [GO:0045627
"positive regulation of T-helper 1 cell differentiation"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0007519 "skeletal muscle tissue
development" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0000976 "transcription regulatory region
sequence-specific DNA binding" evidence=IEA] InterPro:IPR000047
InterPro:IPR001356 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PRINTS:PR00031 PROSITE:PS00027 PROSITE:PS50071
SMART:SM00389 GO:GO:0005634 GO:GO:0008284 GO:GO:0001889
GO:GO:0003700 Gene3D:1.10.10.60 InterPro:IPR020479 PRINTS:PR00024
SUPFAM:SSF46689 GO:GO:0046622 GO:GO:0000976 GO:GO:0048484
GO:GO:0045629 GO:GO:0007519 GO:GO:0045627 GO:GO:0048557
Ensembl:ENSCAFT00000018023 Uniprot:E2R2R4
Length = 405
Score = 118 (46.6 bits), Expect = 0.00089, P = 0.00089
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 36 LEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAKRQPKDFQSLVPA 95
LEK + ++ Y ++ R +L+A LGL+D Q+++WF +RR+K R + A+ Q KD A
Sbjct: 291 LEKRFEIQKYVTKPDRKQLAAMLGLTDAQVKVWFQNRRMKWRHSKEAQAQ-KDKDK--EA 347
Query: 96 GEKELAGSELVRG 108
GEK G+ G
Sbjct: 348 GEKPSGGAAAADG 360
>UNIPROTKB|F1LMV3 [details] [associations]
symbol:Pax3 "Protein Pax3" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0001755 "neural crest
cell migration" evidence=IEA] [GO:0001843 "neural tube closure"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003705 "RNA polymerase II distal enhancer sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007507 "heart development"
evidence=IEA] [GO:0007517 "muscle organ development" evidence=IEA]
[GO:0008283 "cell proliferation" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0021527 "spinal cord association neuron differentiation"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0048066 "developmental pigmentation"
evidence=IEA] [GO:0048663 "neuron fate commitment" evidence=IEA]
[GO:0060594 "mammary gland specification" evidence=IEA] [GO:0071837
"HMG box domain binding" evidence=IPI] InterPro:IPR001356
InterPro:IPR001523 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 Pfam:PF00292 PRINTS:PR00027 PROSITE:PS00027
PROSITE:PS00034 PROSITE:PS50071 PROSITE:PS51057 SMART:SM00351
SMART:SM00389 RGD:620431 GO:GO:0005634 GO:GO:0007507 GO:GO:0008284
GO:GO:0008283 GO:GO:0001755 GO:GO:0043565 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0003705 GO:GO:0000122 GO:GO:0007517 GO:GO:0001843
GO:GO:0021527 GO:GO:0048663 GO:GO:0048066 GO:GO:0060594
GeneTree:ENSGT00680000099553 InterPro:IPR022106 Pfam:PF12360
OMA:VHQSTLP IPI:IPI00765155 Ensembl:ENSRNOT00000018652
ArrayExpress:F1LMV3 Uniprot:F1LMV3
Length = 487
Score = 119 (46.9 bits), Expect = 0.00092, P = 0.00092
Identities = 45/158 (28%), Positives = 68/158 (43%)
Query: 29 TASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAKRQPKD 88
TA QLE LE+ + YP R EL+ + L++ ++Q+WF +RR + RK A Q
Sbjct: 230 TAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGAN-QLMA 288
Query: 89 FQSLVPAGEKELAGSELVRGGMAVQRYY--AVPMA---PML----PFPLPQRNIVEMRVI 139
F L+P G A L ++ Y ++P A P P PLP + + +
Sbjct: 289 FNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIP 348
Query: 140 AFVESQLGEPLREDGPILGVEFDS-LPPDAFGRPIGPA 176
+ +S L DS +PP P+ PA
Sbjct: 349 SNADSSSAYCLPSTRHGFSSYTDSFVPPSGPSNPMNPA 386
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.388 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 753 683 0.00079 121 3 11 22 0.41 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 44
No. of states in DFA: 615 (65 KB)
Total size of DFA: 333 KB (2167 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 71.91u 0.11s 72.02t Elapsed: 00:00:03
Total cpu time: 71.91u 0.11s 72.02t Elapsed: 00:00:03
Start: Tue May 21 17:12:02 2013 End: Tue May 21 17:12:05 2013