Query 004454
Match_columns 753
No_of_seqs 571 out of 2470
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 01:41:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004454.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004454hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cra_A Homeobox protein HOX-B1 99.7 1.4E-16 4.7E-21 133.8 8.1 65 17-81 3-67 (70)
2 2dms_A Homeobox protein OTX2; 99.7 2.2E-16 7.5E-21 136.1 9.2 67 17-83 3-69 (80)
3 2vi6_A Homeobox protein nanog; 99.7 1.1E-16 3.7E-21 131.2 6.9 62 19-80 1-62 (62)
4 2da2_A Alpha-fetoprotein enhan 99.6 2.3E-16 7.7E-21 132.5 8.2 66 17-82 3-68 (70)
5 2dmu_A Homeobox protein goosec 99.6 2.4E-16 8.2E-21 132.4 7.9 65 17-81 3-67 (70)
6 2djn_A Homeobox protein DLX-5; 99.6 2.4E-16 8.3E-21 132.3 7.8 65 17-81 3-67 (70)
7 2dmt_A Homeobox protein BARH-l 99.6 3.1E-16 1.1E-20 135.2 8.5 65 17-81 13-77 (80)
8 2da1_A Alpha-fetoprotein enhan 99.6 2.2E-16 7.7E-21 132.5 7.4 65 17-81 3-67 (70)
9 2h1k_A IPF-1, pancreatic and d 99.6 2.1E-16 7.3E-21 129.9 6.5 61 20-80 2-62 (63)
10 2kt0_A Nanog, homeobox protein 99.6 4.4E-16 1.5E-20 135.4 8.7 65 17-81 18-82 (84)
11 2dmq_A LIM/homeobox protein LH 99.6 5E-16 1.7E-20 133.8 8.6 67 17-83 3-69 (80)
12 1wh5_A ZF-HD homeobox family p 99.6 4.5E-16 1.5E-20 134.1 8.0 62 17-78 13-78 (80)
13 2cue_A Paired box protein PAX6 99.6 3.1E-16 1.1E-20 135.2 6.9 68 17-84 3-70 (80)
14 2m0c_A Homeobox protein arista 99.6 6.8E-16 2.3E-20 131.1 8.9 69 16-84 4-72 (75)
15 2hdd_A Protein (engrailed home 99.6 3.5E-16 1.2E-20 127.7 6.6 59 20-78 2-60 (61)
16 2l7z_A Homeobox protein HOX-A1 99.6 6.9E-16 2.3E-20 130.7 8.5 66 18-83 4-69 (73)
17 1yz8_P Pituitary homeobox 2; D 99.6 2.5E-16 8.4E-21 131.6 5.6 65 19-83 1-65 (68)
18 2e1o_A Homeobox protein PRH; D 99.6 5.2E-16 1.8E-20 130.3 7.4 65 17-81 3-67 (70)
19 1bw5_A ISL-1HD, insulin gene e 99.6 5.8E-16 2E-20 128.5 7.5 62 20-81 2-63 (66)
20 1ig7_A Homeotic protein MSX-1; 99.6 5.5E-16 1.9E-20 125.2 7.0 58 22-79 1-58 (58)
21 1zq3_P PRD-4, homeotic bicoid 99.6 5.1E-16 1.7E-20 129.7 7.0 64 21-84 2-65 (68)
22 1nk2_P Homeobox protein VND; h 99.6 6.8E-16 2.3E-20 132.0 7.9 66 18-83 6-71 (77)
23 1ahd_P Antennapedia protein mu 99.6 4.8E-16 1.6E-20 129.8 6.6 63 21-83 2-64 (68)
24 1ftt_A TTF-1 HD, thyroid trans 99.6 8E-16 2.8E-20 128.4 7.6 63 21-83 2-64 (68)
25 2da3_A Alpha-fetoprotein enhan 99.6 6E-16 2E-20 133.2 6.9 65 17-81 13-77 (80)
26 2da4_A Hypothetical protein DK 99.6 5.1E-16 1.7E-20 133.8 6.1 65 16-80 3-71 (80)
27 1wh7_A ZF-HD homeobox family p 99.6 1E-15 3.4E-20 131.9 7.3 61 17-78 13-78 (80)
28 1jgg_A Segmentation protein EV 99.6 9.7E-16 3.3E-20 124.7 6.8 58 22-79 2-59 (60)
29 1b8i_A Ultrabithorax, protein 99.6 9.9E-16 3.4E-20 132.3 6.8 63 18-80 17-79 (81)
30 2k40_A Homeobox expressed in E 99.6 1.5E-15 5.2E-20 126.3 7.6 63 21-83 1-63 (67)
31 1puf_A HOX-1.7, homeobox prote 99.6 1E-15 3.5E-20 131.0 6.6 65 18-82 10-74 (77)
32 2r5y_A Homeotic protein sex co 99.6 1.2E-15 4.1E-20 133.8 7.0 64 17-80 24-87 (88)
33 3rkq_A Homeobox protein NKX-2. 99.6 1.8E-15 6.1E-20 122.0 7.3 57 21-77 2-58 (58)
34 1fjl_A Paired protein; DNA-bin 99.6 1.1E-15 3.9E-20 131.9 6.5 65 17-81 14-78 (81)
35 2dn0_A Zinc fingers and homeob 99.6 2.7E-15 9.2E-20 128.0 8.7 66 18-83 5-70 (76)
36 3a01_A Homeodomain-containing 99.6 1.4E-15 4.8E-20 134.9 7.2 67 17-83 13-79 (93)
37 1akh_A Protein (mating-type pr 99.6 1.5E-15 5E-20 124.0 6.2 59 19-77 3-61 (61)
38 3a02_A Homeobox protein arista 99.6 2.2E-15 7.4E-20 122.6 6.4 57 24-80 2-58 (60)
39 2da5_A Zinc fingers and homeob 99.6 4.8E-15 1.6E-19 126.2 8.6 62 22-83 8-69 (75)
40 2hi3_A Homeodomain-only protei 99.6 3.3E-15 1.1E-19 126.4 7.5 63 21-83 2-65 (73)
41 2ecc_A Homeobox and leucine zi 99.6 2.8E-15 9.6E-20 127.1 6.9 61 23-83 5-65 (76)
42 1uhs_A HOP, homeodomain only p 99.6 3.7E-15 1.3E-19 125.8 7.5 62 22-83 2-64 (72)
43 1b72_A Protein (homeobox prote 99.6 2.2E-15 7.5E-20 134.6 6.1 66 17-82 30-95 (97)
44 2ecb_A Zinc fingers and homeob 99.6 8.1E-15 2.8E-19 128.4 9.3 57 27-83 17-73 (89)
45 3a03_A T-cell leukemia homeobo 99.6 3E-15 1E-19 120.2 5.9 54 26-79 2-55 (56)
46 2ly9_A Zinc fingers and homeob 99.6 7.1E-15 2.4E-19 124.7 8.3 64 20-83 5-68 (74)
47 2cuf_A FLJ21616 protein; homeo 99.5 4.8E-15 1.6E-19 131.9 7.3 67 17-83 3-84 (95)
48 1x2n_A Homeobox protein pknox1 99.5 9.9E-15 3.4E-19 123.5 8.0 65 18-82 4-71 (73)
49 1au7_A Protein PIT-1, GHF-1; c 99.5 4.8E-15 1.6E-19 142.1 6.6 64 17-80 83-146 (146)
50 1du6_A PBX1, homeobox protein 99.5 7.4E-15 2.5E-19 121.0 6.8 60 20-79 2-64 (64)
51 1puf_B PRE-B-cell leukemia tra 99.5 1E-14 3.5E-19 123.3 7.6 63 21-83 1-66 (73)
52 1wi3_A DNA-binding protein SAT 99.5 1.1E-14 3.9E-19 119.0 7.3 62 17-78 3-65 (71)
53 3nar_A ZHX1, zinc fingers and 99.5 1.1E-14 3.7E-19 129.9 7.2 64 18-81 22-85 (96)
54 2dmn_A Homeobox protein TGIF2L 99.5 3.2E-14 1.1E-18 123.5 8.8 67 17-83 3-72 (83)
55 1k61_A Mating-type protein alp 99.5 2.4E-14 8.3E-19 116.4 7.1 56 24-79 1-59 (60)
56 2da6_A Hepatocyte nuclear fact 99.5 2.8E-14 9.5E-19 127.4 7.9 66 18-83 3-89 (102)
57 1b72_B Protein (PBX1); homeodo 99.5 2.4E-14 8.3E-19 125.2 7.2 63 21-83 1-66 (87)
58 2xsd_C POU domain, class 3, tr 99.5 1.9E-14 6.4E-19 140.6 6.7 66 17-82 95-160 (164)
59 2cqx_A LAG1 longevity assuranc 99.5 1.4E-14 4.8E-19 122.3 4.7 60 21-80 8-68 (72)
60 2dmp_A Zinc fingers and homeob 99.5 6.9E-14 2.4E-18 122.9 8.9 61 24-84 16-76 (89)
61 2l9r_A Homeobox protein NKX-3. 99.5 4.9E-14 1.7E-18 117.8 7.1 57 26-82 9-65 (69)
62 1mnm_C Protein (MAT alpha-2 tr 99.5 5.1E-14 1.8E-18 123.2 7.4 61 18-78 24-87 (87)
63 1e3o_C Octamer-binding transcr 99.5 3.7E-14 1.3E-18 138.0 7.1 61 19-79 99-159 (160)
64 3nau_A Zinc fingers and homeob 99.5 3.7E-14 1.3E-18 116.3 5.7 52 28-79 11-62 (66)
65 1lfb_A Liver transcription fac 99.5 4.3E-14 1.5E-18 126.4 6.7 66 18-83 6-92 (99)
66 1le8_B Mating-type protein alp 99.5 6E-14 2E-18 121.7 7.2 60 22-81 3-65 (83)
67 3l1p_A POU domain, class 5, tr 99.5 4.2E-14 1.4E-18 136.9 6.7 62 18-79 93-154 (155)
68 3d1n_I POU domain, class 6, tr 99.5 7.6E-14 2.6E-18 134.5 7.8 61 18-78 90-150 (151)
69 2e19_A Transcription factor 8; 99.4 1.3E-13 4.3E-18 113.7 7.1 56 25-80 7-62 (64)
70 1x2m_A LAG1 longevity assuranc 99.4 7.2E-14 2.5E-18 114.6 5.5 51 30-80 9-60 (64)
71 2d5v_A Hepatocyte nuclear fact 99.4 1.9E-13 6.4E-18 133.6 7.0 66 17-82 93-158 (164)
72 3k2a_A Homeobox protein MEIS2; 99.3 2.9E-12 9.8E-17 106.6 6.4 57 27-83 4-63 (67)
73 1ic8_A Hepatocyte nuclear fact 99.2 7E-12 2.4E-16 125.1 4.8 61 18-78 112-193 (194)
74 2da7_A Zinc finger homeobox pr 99.2 2.5E-11 8.6E-16 100.0 5.7 46 30-75 14-59 (71)
75 2h8r_A Hepatocyte nuclear fact 99.1 1.3E-10 4.6E-15 117.1 6.5 59 18-76 139-218 (221)
76 2lk2_A Homeobox protein TGIF1; 99.0 3E-10 1E-14 99.0 6.6 59 25-83 9-70 (89)
77 1mh3_A Maltose binding-A1 home 98.8 1.6E-09 5.6E-14 119.4 5.7 56 22-77 366-421 (421)
78 2nzz_A Penetratin conjugated G 98.1 2.6E-07 8.8E-12 67.1 -0.8 22 63-84 1-22 (37)
79 2i1j_A Moesin; FERM, coiled-co 89.7 0.27 9.2E-06 56.7 5.2 14 50-63 29-42 (575)
80 2ys9_A Homeobox and leucine zi 87.3 0.7 2.4E-05 38.0 4.7 43 29-71 14-56 (70)
81 2i1j_A Moesin; FERM, coiled-co 81.5 0.87 3E-05 52.5 3.9 9 589-597 521-529 (575)
82 2y9y_B IOC3, ISWI one complex 58.8 14 0.00048 41.7 6.7 58 540-597 53-146 (624)
83 2glo_A Brinker CG9653-PA; prot 44.7 35 0.0012 26.1 5.2 45 25-70 3-47 (59)
84 3kp1_E D-ornithine aminomutase 40.5 8.7 0.0003 34.8 1.1 66 639-748 39-104 (121)
85 1hlv_A CENP-B, major centromer 36.4 64 0.0022 28.5 6.4 48 24-74 4-51 (131)
86 2elh_A CG11849-PA, LD40883P; s 36.0 71 0.0024 26.5 6.2 45 21-70 16-60 (87)
87 1tc3_C Protein (TC3 transposas 27.6 1.1E+02 0.0038 21.2 5.3 40 27-71 5-44 (51)
88 1jko_C HIN recombinase, DNA-in 26.9 54 0.0019 23.4 3.5 41 28-73 6-46 (52)
89 3c57_A Two component transcrip 25.6 96 0.0033 26.1 5.3 49 26-80 26-74 (95)
90 3hug_A RNA polymerase sigma fa 24.8 85 0.0029 26.1 4.8 49 27-80 37-85 (92)
91 2o8x_A Probable RNA polymerase 24.7 77 0.0026 24.4 4.2 48 27-79 15-62 (70)
92 1p4w_A RCSB; solution structur 22.8 1.3E+02 0.0046 25.7 5.7 47 25-77 32-78 (99)
93 2dfs_A Myosin-5A; myosin-V, in 22.2 1.1E+03 0.039 28.7 19.7 31 48-78 354-384 (1080)
94 2p7v_B Sigma-70, RNA polymeras 20.7 1.5E+02 0.0051 23.0 5.2 53 27-80 5-57 (68)
95 1ij5_A Plasmodial specific LAV 20.5 1.6E+02 0.0056 30.5 6.9 32 717-749 287-318 (323)
No 1
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=1.4e-16 Score=133.83 Aligned_cols=65 Identities=32% Similarity=0.540 Sum_probs=61.4
Q ss_pred ccCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccc
Q 004454 17 LEAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPT 81 (753)
Q Consensus 17 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~ 81 (753)
..++.|++||.||..|+.+|+..|..++||+..++..||..|||++.+|+|||||||+|+|+...
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 3 SGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp SSCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 45678899999999999999999999999999999999999999999999999999999999753
No 2
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=2.2e-16 Score=136.09 Aligned_cols=67 Identities=28% Similarity=0.520 Sum_probs=63.1
Q ss_pred ccCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccccc
Q 004454 17 LEAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAK 83 (753)
Q Consensus 17 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~~ 83 (753)
.+++.|+.||.||..|+.+|+..|..++||+..++..||..|||++.+|+|||||||+|+|+.....
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~ 69 (80)
T 2dms_A 3 SGSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQ 69 (80)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHcc
Confidence 4567889999999999999999999999999999999999999999999999999999999977655
No 3
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.65 E-value=1.1e-16 Score=131.23 Aligned_cols=62 Identities=27% Similarity=0.402 Sum_probs=53.7
Q ss_pred CcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhcccc
Q 004454 19 AEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAP 80 (753)
Q Consensus 19 ~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~ 80 (753)
++.|+.||.||..|+..|+..|..++||+..++..||..|||++.+|+|||||||+|+|+.+
T Consensus 1 g~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 1 GTKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp -------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 35788999999999999999999999999999999999999999999999999999999863
No 4
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.65 E-value=2.3e-16 Score=132.47 Aligned_cols=66 Identities=27% Similarity=0.442 Sum_probs=61.9
Q ss_pred ccCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhcccccc
Q 004454 17 LEAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTA 82 (753)
Q Consensus 17 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~ 82 (753)
..++.|+.||.||..|+.+|+..|..++||+..++..||..|||++.+|+|||||||+|+|+....
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da2_A 3 SGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPS 68 (70)
T ss_dssp CSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcccc
Confidence 456788999999999999999999999999999999999999999999999999999999997543
No 5
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.4e-16 Score=132.36 Aligned_cols=65 Identities=28% Similarity=0.496 Sum_probs=61.4
Q ss_pred ccCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccc
Q 004454 17 LEAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPT 81 (753)
Q Consensus 17 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~ 81 (753)
.++..|+.||.||..|+..|+..|..++||+..++..||..|||++.+|+|||||||+|+|+...
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 3 SGSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp STTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 45678899999999999999999999999999999999999999999999999999999998654
No 6
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2.4e-16 Score=132.33 Aligned_cols=65 Identities=29% Similarity=0.488 Sum_probs=61.4
Q ss_pred ccCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccc
Q 004454 17 LEAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPT 81 (753)
Q Consensus 17 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~ 81 (753)
.+++.|+.||.||..|+.+|+..|..++||+..++..||..|||++.+|+|||||||+|+|+...
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 3 SGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp SCCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 46678899999999999999999999999999999999999999999999999999999998653
No 7
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=3.1e-16 Score=135.19 Aligned_cols=65 Identities=32% Similarity=0.452 Sum_probs=61.3
Q ss_pred ccCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccc
Q 004454 17 LEAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPT 81 (753)
Q Consensus 17 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~ 81 (753)
..++.|+.||.||..|+..|+..|..++||+..++..||..|||++.||+|||||||+|+|+...
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 35678889999999999999999999999999999999999999999999999999999999754
No 8
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.64 E-value=2.2e-16 Score=132.48 Aligned_cols=65 Identities=25% Similarity=0.444 Sum_probs=61.6
Q ss_pred ccCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccc
Q 004454 17 LEAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPT 81 (753)
Q Consensus 17 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~ 81 (753)
..++.|+.||.||..|+.+|+..|..++||+..++..||..|||++.+|+|||||||+|+|+...
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 3 SGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp SSCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 45678899999999999999999999999999999999999999999999999999999999764
No 9
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.63 E-value=2.1e-16 Score=129.93 Aligned_cols=61 Identities=36% Similarity=0.560 Sum_probs=56.3
Q ss_pred cCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhcccc
Q 004454 20 EVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAP 80 (753)
Q Consensus 20 k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~ 80 (753)
..|+.||.||..|+..|+..|..++||+..++..||..|||++.+|+|||||||+|+|+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 5788999999999999999999999999999999999999999999999999999999853
No 10
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.63 E-value=4.4e-16 Score=135.40 Aligned_cols=65 Identities=26% Similarity=0.440 Sum_probs=61.6
Q ss_pred ccCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccc
Q 004454 17 LEAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPT 81 (753)
Q Consensus 17 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~ 81 (753)
..++.|+.||.||..|+.+|+..|..++||+..++..||..|||++.+|+|||||||+|+|+..+
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 45678899999999999999999999999999999999999999999999999999999999764
No 11
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=5e-16 Score=133.77 Aligned_cols=67 Identities=25% Similarity=0.362 Sum_probs=62.5
Q ss_pred ccCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccccc
Q 004454 17 LEAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAK 83 (753)
Q Consensus 17 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~~ 83 (753)
.+++.|+.||.||..|+..|+..|..++||+..++..||..|||++.+|+|||||||+|+|+.....
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (80)
T 2dmq_A 3 SGSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQ 69 (80)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999999999999999976544
No 12
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.63 E-value=4.5e-16 Score=134.13 Aligned_cols=62 Identities=15% Similarity=0.153 Sum_probs=58.9
Q ss_pred ccCcCCCCCCCCCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhcc
Q 004454 17 LEAEVKTKRKMKTASQLEILEKTYAV----ESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRK 78 (753)
Q Consensus 17 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~----~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr 78 (753)
..+++||.||.||..|+..|+..|.. ++||+..+|.+||..|||++.+|+|||||||+|+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 13 GGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 34678899999999999999999999 999999999999999999999999999999999886
No 13
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=3.1e-16 Score=135.19 Aligned_cols=68 Identities=29% Similarity=0.499 Sum_probs=63.5
Q ss_pred ccCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhcccccccC
Q 004454 17 LEAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAKR 84 (753)
Q Consensus 17 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~~~ 84 (753)
.++..|+.||.||..|+.+|+..|..++||+..++..||..|||++.+|+|||||||+|+|+......
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~ 70 (80)
T 2cue_A 3 SGSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRN 70 (80)
T ss_dssp SCCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhh
Confidence 45678899999999999999999999999999999999999999999999999999999999876553
No 14
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.63 E-value=6.8e-16 Score=131.14 Aligned_cols=69 Identities=30% Similarity=0.453 Sum_probs=64.0
Q ss_pred CccCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhcccccccC
Q 004454 16 PLEAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAKR 84 (753)
Q Consensus 16 ~~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~~~ 84 (753)
++.+++++.||.||..|+..|+..|..++||+..++..||..|||++.+|+|||||||+|+|+.....+
T Consensus 4 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~~q 72 (75)
T 2m0c_A 4 SNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQ 72 (75)
T ss_dssp CCCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCCS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhhhh
Confidence 456788899999999999999999999999999999999999999999999999999999999876543
No 15
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.62 E-value=3.5e-16 Score=127.74 Aligned_cols=59 Identities=32% Similarity=0.571 Sum_probs=53.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhcc
Q 004454 20 EVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRK 78 (753)
Q Consensus 20 k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr 78 (753)
..|+.||.||..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 36789999999999999999999999999999999999999999999999999999987
No 16
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.62 E-value=6.9e-16 Score=130.69 Aligned_cols=66 Identities=35% Similarity=0.517 Sum_probs=62.1
Q ss_pred cCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccccc
Q 004454 18 EAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAK 83 (753)
Q Consensus 18 ~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~~ 83 (753)
..+.|++|+.||..|+..|+..|..++||+..++..||..+||++.+|+|||||||+|+|+.....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKL 69 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhccc
Confidence 456788999999999999999999999999999999999999999999999999999999986654
No 17
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.62 E-value=2.5e-16 Score=131.56 Aligned_cols=65 Identities=29% Similarity=0.470 Sum_probs=61.2
Q ss_pred CcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccccc
Q 004454 19 AEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAK 83 (753)
Q Consensus 19 ~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~~ 83 (753)
+++|+.||.||..|+..|+..|..++||+..++..||..|||++.+|+|||||||+|+|+.....
T Consensus 1 g~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~~ 65 (68)
T 1yz8_P 1 GSQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEFI 65 (68)
T ss_dssp CCSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhcc
Confidence 46788999999999999999999999999999999999999999999999999999999976654
No 18
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=5.2e-16 Score=130.31 Aligned_cols=65 Identities=31% Similarity=0.384 Sum_probs=60.9
Q ss_pred ccCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccc
Q 004454 17 LEAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPT 81 (753)
Q Consensus 17 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~ 81 (753)
.+...+++|+.||..|+.+|+..|..++||+..++..||..|||++.+|++||||||+|+|+...
T Consensus 3 ~~~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 3 SGSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 35678889999999999999999999999999999999999999999999999999999998654
No 19
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.62 E-value=5.8e-16 Score=128.49 Aligned_cols=62 Identities=29% Similarity=0.536 Sum_probs=59.1
Q ss_pred cCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccc
Q 004454 20 EVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPT 81 (753)
Q Consensus 20 k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~ 81 (753)
++|+.||.||..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+...
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhh
Confidence 47889999999999999999999999999999999999999999999999999999998753
No 20
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.62 E-value=5.5e-16 Score=125.21 Aligned_cols=58 Identities=36% Similarity=0.578 Sum_probs=55.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccc
Q 004454 22 KTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKA 79 (753)
Q Consensus 22 rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~ 79 (753)
|++||.||..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 58 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhccC
Confidence 5789999999999999999999999999999999999999999999999999999873
No 21
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.62 E-value=5.1e-16 Score=129.66 Aligned_cols=64 Identities=28% Similarity=0.466 Sum_probs=60.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhcccccccC
Q 004454 21 VKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAKR 84 (753)
Q Consensus 21 ~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~~~ 84 (753)
+|+.||.||..|+..|+..|..++||+..++..||..|||++.+|+|||||||+|+|+......
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~~ 65 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHK 65 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcccc
Confidence 5789999999999999999999999999999999999999999999999999999999776553
No 22
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.61 E-value=6.8e-16 Score=132.04 Aligned_cols=66 Identities=26% Similarity=0.456 Sum_probs=61.7
Q ss_pred cCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccccc
Q 004454 18 EAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAK 83 (753)
Q Consensus 18 ~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~~ 83 (753)
..++|+.||.||..|+..|+..|..++||+..++..||..|||++.+|+|||||||+|+|+.....
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 457788999999999999999999999999999999999999999999999999999999876544
No 23
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.61 E-value=4.8e-16 Score=129.84 Aligned_cols=63 Identities=33% Similarity=0.509 Sum_probs=59.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccccc
Q 004454 21 VKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAK 83 (753)
Q Consensus 21 ~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~~ 83 (753)
+|+.||.||..|+..|+..|..++||+..++..||..|||++.+|+|||||||+|+|+.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 64 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTK 64 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcccc
Confidence 578999999999999999999999999999999999999999999999999999999976544
No 24
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.61 E-value=8e-16 Score=128.44 Aligned_cols=63 Identities=24% Similarity=0.459 Sum_probs=59.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccccc
Q 004454 21 VKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAK 83 (753)
Q Consensus 21 ~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~~ 83 (753)
+|+.||.||..|+..|+..|..++||+..++..||..|||++.+|+|||||||+|+|+.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 578999999999999999999999999999999999999999999999999999999987654
No 25
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.61 E-value=6e-16 Score=133.21 Aligned_cols=65 Identities=31% Similarity=0.525 Sum_probs=61.1
Q ss_pred ccCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccc
Q 004454 17 LEAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPT 81 (753)
Q Consensus 17 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~ 81 (753)
...+.|+.||.||..|+..|+..|..++||+..++..||..|||++.+|+|||||||+|+|+...
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhcc
Confidence 35678889999999999999999999999999999999999999999999999999999999754
No 26
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=5.1e-16 Score=133.81 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=61.0
Q ss_pred CccCcCCCCCCCCCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhcccc
Q 004454 16 PLEAEVKTKRKMKTASQLEILEKTYAVE----SYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAP 80 (753)
Q Consensus 16 ~~~~k~rr~Rt~~t~~Ql~~Le~~F~~~----~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~ 80 (753)
+..++.|+.||.||..|+.+|+..|..+ +||+..++..||..|||++.+|+|||||||+|+|+..
T Consensus 3 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 3 SGSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 3456788999999999999999999999 9999999999999999999999999999999999854
No 27
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.60 E-value=1e-15 Score=131.87 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=57.8
Q ss_pred ccCcCCCCCCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhcc
Q 004454 17 LEAEVKTKRKMKTASQLEILEKTYAV-----ESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRK 78 (753)
Q Consensus 17 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~-----~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr 78 (753)
...++||.||.||..|+..|+ .|.. ++||+..+|.+||..|||++.+|+|||||||+|+++
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 456788999999999999999 7999 999999999999999999999999999999999986
No 28
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.60 E-value=9.7e-16 Score=124.71 Aligned_cols=58 Identities=40% Similarity=0.642 Sum_probs=55.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccc
Q 004454 22 KTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKA 79 (753)
Q Consensus 22 rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~ 79 (753)
|+.||.||..|+..|+..|..++||+..++..||..|||++.+|++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 6789999999999999999999999999999999999999999999999999999985
No 29
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.59 E-value=9.9e-16 Score=132.34 Aligned_cols=63 Identities=30% Similarity=0.475 Sum_probs=54.9
Q ss_pred cCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhcccc
Q 004454 18 EAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAP 80 (753)
Q Consensus 18 ~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~ 80 (753)
.++.|+.||.||..|+..|+..|..++||+..++..||..|||++.+|+|||||||+|+|+..
T Consensus 17 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 17 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 456788999999999999999999999999999999999999999999999999999999865
No 30
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.59 E-value=1.5e-15 Score=126.34 Aligned_cols=63 Identities=29% Similarity=0.536 Sum_probs=59.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccccc
Q 004454 21 VKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAK 83 (753)
Q Consensus 21 ~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~~ 83 (753)
.|++||.||..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+.....
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~~ 63 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRES 63 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCTT
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchhc
Confidence 368899999999999999999999999999999999999999999999999999999976543
No 31
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.59 E-value=1e-15 Score=130.96 Aligned_cols=65 Identities=31% Similarity=0.457 Sum_probs=61.1
Q ss_pred cCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhcccccc
Q 004454 18 EAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTA 82 (753)
Q Consensus 18 ~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~ 82 (753)
.++.|++||.||..|+..|+..|..++||+..++..||..|||++.+|+|||||||+|+|+....
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 45678899999999999999999999999999999999999999999999999999999987653
No 32
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.59 E-value=1.2e-15 Score=133.85 Aligned_cols=64 Identities=33% Similarity=0.512 Sum_probs=55.8
Q ss_pred ccCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhcccc
Q 004454 17 LEAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAP 80 (753)
Q Consensus 17 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~ 80 (753)
..++.|+.||.||..|+..|+..|..++||+..+|..||..|||++.+|+|||||||+|+|+..
T Consensus 24 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 24 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 3467889999999999999999999999999999999999999999999999999999999865
No 33
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.59 E-value=1.8e-15 Score=121.99 Aligned_cols=57 Identities=28% Similarity=0.515 Sum_probs=55.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhc
Q 004454 21 VKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDR 77 (753)
Q Consensus 21 ~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~k 77 (753)
+|+.|+.||..|+..|+..|..++||+..++..||..|||++.+|++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 567899999999999999999999999999999999999999999999999999986
No 34
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.59 E-value=1.1e-15 Score=131.95 Aligned_cols=65 Identities=34% Similarity=0.567 Sum_probs=59.5
Q ss_pred ccCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccc
Q 004454 17 LEAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPT 81 (753)
Q Consensus 17 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~ 81 (753)
..++.|+.||.||..|+..|+..|..++||+..++..||..|||++.+|++||||||+|+|+...
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 45678889999999999999999999999999999999999999999999999999999998653
No 35
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.7e-15 Score=128.01 Aligned_cols=66 Identities=23% Similarity=0.458 Sum_probs=60.7
Q ss_pred cCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccccc
Q 004454 18 EAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAK 83 (753)
Q Consensus 18 ~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~~ 83 (753)
.....+.|+.||..|+.+|+..|..++||+..++..||..|||++.+|+|||||||+|+|+.....
T Consensus 5 ~~~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~~ 70 (76)
T 2dn0_A 5 SSGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSR 70 (76)
T ss_dssp CSCCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSSS
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcccC
Confidence 345566799999999999999999999999999999999999999999999999999999976654
No 36
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.59 E-value=1.4e-15 Score=134.86 Aligned_cols=67 Identities=31% Similarity=0.430 Sum_probs=62.4
Q ss_pred ccCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccccc
Q 004454 17 LEAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAK 83 (753)
Q Consensus 17 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~~ 83 (753)
...+.|+.||.||..|+..|+..|..++||+..++..||..|||++.+|+|||||||+|+|+.....
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 79 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEE 79 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHH
Confidence 3467888999999999999999999999999999999999999999999999999999999976554
No 37
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.58 E-value=1.5e-15 Score=124.00 Aligned_cols=59 Identities=14% Similarity=0.378 Sum_probs=48.6
Q ss_pred CcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhc
Q 004454 19 AEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDR 77 (753)
Q Consensus 19 ~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~k 77 (753)
++.++.|+.||..|+.+|+..|..++||+..++..||..+||++.||++||||||+++|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 46788999999999999999999999999999999999999999999999999999975
No 38
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.57 E-value=2.2e-15 Score=122.64 Aligned_cols=57 Identities=39% Similarity=0.601 Sum_probs=50.8
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhcccc
Q 004454 24 KRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAP 80 (753)
Q Consensus 24 ~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~ 80 (753)
.||.||..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 589999999999999999999999999999999999999999999999999999865
No 39
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=4.8e-15 Score=126.18 Aligned_cols=62 Identities=29% Similarity=0.460 Sum_probs=57.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccccc
Q 004454 22 KTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAK 83 (753)
Q Consensus 22 rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~~ 83 (753)
.++|+.||..|+..|+..|..++||+..++..||..|||++.+|+|||||||+|+|+.....
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 69 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETKK 69 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCSS
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhcc
Confidence 35677899999999999999999999999999999999999999999999999999987654
No 40
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=3.3e-15 Score=126.43 Aligned_cols=63 Identities=25% Similarity=0.344 Sum_probs=58.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccccc
Q 004454 21 VKTKRKMKTASQLEILEKTYAV-ESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAK 83 (753)
Q Consensus 21 ~rr~Rt~~t~~Ql~~Le~~F~~-~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~~ 83 (753)
.+++||.||..|+.+|+..|.. ++||+..++..||..+||++.+|+|||||||+|+|+.....
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~~~ 65 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLP 65 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhccCC
Confidence 3578999999999999999995 99999999999999999999999999999999999976443
No 41
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=2.8e-15 Score=127.11 Aligned_cols=61 Identities=21% Similarity=0.281 Sum_probs=56.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccccc
Q 004454 23 TKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAK 83 (753)
Q Consensus 23 r~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~~ 83 (753)
.+|+.||.+|+.+|+..|..++||+..+|.+||..+||++.||+|||||||+|+|+..-.-
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~w 65 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLKW 65 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHHH
Confidence 4677899999999999999999999999999999999999999999999999999876544
No 42
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.56 E-value=3.7e-15 Score=125.82 Aligned_cols=62 Identities=26% Similarity=0.367 Sum_probs=57.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccccc
Q 004454 22 KTKRKMKTASQLEILEKTYAV-ESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAK 83 (753)
Q Consensus 22 rr~Rt~~t~~Ql~~Le~~F~~-~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~~ 83 (753)
.++|+.||..|+..|+..|.. ++||+..++..||..|||++.+|+|||||||+|+|+.....
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~~~ 64 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLP 64 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhccCC
Confidence 468999999999999999996 99999999999999999999999999999999999976443
No 43
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=2.2e-15 Score=134.61 Aligned_cols=66 Identities=33% Similarity=0.475 Sum_probs=56.7
Q ss_pred ccCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhcccccc
Q 004454 17 LEAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTA 82 (753)
Q Consensus 17 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~ 82 (753)
..+..+++||.||..|+..|+..|..++||+..++..||..|||++.+|+|||||||+|+|+....
T Consensus 30 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 30 GLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp -------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhcc
Confidence 346788899999999999999999999999999999999999999999999999999999987543
No 44
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=8.1e-15 Score=128.43 Aligned_cols=57 Identities=25% Similarity=0.375 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccccc
Q 004454 27 MKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAK 83 (753)
Q Consensus 27 ~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~~ 83 (753)
.||..|+.+|+..|..++||+..+|.+||..|||+++||+|||||||+||++.....
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~ 73 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKM 73 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999876554
No 45
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.56 E-value=3e-15 Score=120.15 Aligned_cols=54 Identities=33% Similarity=0.491 Sum_probs=51.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccc
Q 004454 26 KMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKA 79 (753)
Q Consensus 26 t~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~ 79 (753)
|.||..|+..|+..|..++||+..++..||..+||++.+|+|||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 689999999999999999999999999999999999999999999999999985
No 46
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.55 E-value=7.1e-15 Score=124.65 Aligned_cols=64 Identities=23% Similarity=0.423 Sum_probs=59.8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccccc
Q 004454 20 EVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAK 83 (753)
Q Consensus 20 k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~~ 83 (753)
..++.|+.||..|+..|+..|..++||+..++..||..|||++.+|+|||||||+|+|+.....
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 68 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQ 68 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCC
Confidence 4577899999999999999999999999999999999999999999999999999999976543
No 47
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=4.8e-15 Score=131.92 Aligned_cols=67 Identities=19% Similarity=0.352 Sum_probs=63.1
Q ss_pred ccCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC---------------CChHHHhHhhhhhhhhhccccc
Q 004454 17 LEAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLG---------------LSDRQLQMWFCHRRLKDRKAPT 81 (753)
Q Consensus 17 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lg---------------L~~~qVqiWFqNRR~K~kr~~~ 81 (753)
...++|+.|+.||..|+.+|+..|..++||+..++..||..|| |++.+|++||||||+|+|+...
T Consensus 3 ~~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 3 SGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SSSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 4567889999999999999999999999999999999999999 9999999999999999999876
Q ss_pred cc
Q 004454 82 AK 83 (753)
Q Consensus 82 ~~ 83 (753)
..
T Consensus 83 ~~ 84 (95)
T 2cuf_A 83 IA 84 (95)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 48
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=9.9e-15 Score=123.45 Aligned_cols=65 Identities=20% Similarity=0.309 Sum_probs=60.4
Q ss_pred cCcCCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhcccccc
Q 004454 18 EAEVKTKRKMKTASQLEILEKTYAV---ESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTA 82 (753)
Q Consensus 18 ~~k~rr~Rt~~t~~Ql~~Le~~F~~---~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~ 82 (753)
.++.|++|+.|+..|+.+|+..|.. ++||+..++..||..+||++.||++||||||+|+++....
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 4678889999999999999999987 9999999999999999999999999999999999987543
No 49
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.54 E-value=4.8e-15 Score=142.15 Aligned_cols=64 Identities=20% Similarity=0.503 Sum_probs=56.5
Q ss_pred ccCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhcccc
Q 004454 17 LEAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAP 80 (753)
Q Consensus 17 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~ 80 (753)
..+++||+||.||..|+..|+..|..++||+..+|..||..|||++++|+|||||||+|+||.+
T Consensus 83 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~k 146 (146)
T 1au7_A 83 ANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK 146 (146)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhccC
Confidence 4567888999999999999999999999999999999999999999999999999999999863
No 50
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.54 E-value=7.4e-15 Score=120.99 Aligned_cols=60 Identities=25% Similarity=0.497 Sum_probs=57.1
Q ss_pred cCCCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccc
Q 004454 20 EVKTKRKMKTASQLEILEKTY---AVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKA 79 (753)
Q Consensus 20 k~rr~Rt~~t~~Ql~~Le~~F---~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~ 79 (753)
..+++|+.||..|+.+|+..| ..++||+..++..||..+||++.||++||||||+|+||.
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 467899999999999999999 999999999999999999999999999999999999873
No 51
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.53 E-value=1e-14 Score=123.34 Aligned_cols=63 Identities=27% Similarity=0.490 Sum_probs=59.3
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccccc
Q 004454 21 VKTKRKMKTASQLEILEKTY---AVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAK 83 (753)
Q Consensus 21 ~rr~Rt~~t~~Ql~~Le~~F---~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~~ 83 (753)
.|++|+.||..|+.+|+..| ..++||+..++..||..+||++.||++||||||+|+|+.....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 37899999999999999999 9999999999999999999999999999999999999876654
No 52
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=1.1e-14 Score=119.01 Aligned_cols=62 Identities=23% Similarity=0.268 Sum_probs=57.7
Q ss_pred ccCcCCCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhcc
Q 004454 17 LEAEVKTKRKMKTASQLEILEKTYAV-ESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRK 78 (753)
Q Consensus 17 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~-~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr 78 (753)
.++.+||.||.|+.+||.+|+..|+. ++||+...|..||..|||++++|+|||||+|.-.+.
T Consensus 3 ~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~ 65 (71)
T 1wi3_A 3 SGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKH 65 (71)
T ss_dssp CCCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCS
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecC
Confidence 35678899999999999999999999 999999999999999999999999999999986554
No 53
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.52 E-value=1.1e-14 Score=129.86 Aligned_cols=64 Identities=22% Similarity=0.352 Sum_probs=57.0
Q ss_pred cCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccc
Q 004454 18 EAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPT 81 (753)
Q Consensus 18 ~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~ 81 (753)
....+++|+.||..|+..|+..|..++||+..++..||..|||++.+|+|||||||+|+|+.+.
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~l 85 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL 85 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcc
Confidence 4566789999999999999999999999999999999999999999999999999999999753
No 54
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.51 E-value=3.2e-14 Score=123.48 Aligned_cols=67 Identities=24% Similarity=0.269 Sum_probs=61.3
Q ss_pred ccCcCCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccccc
Q 004454 17 LEAEVKTKRKMKTASQLEILEKTYAV---ESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAK 83 (753)
Q Consensus 17 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~---~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~~ 83 (753)
.+.++|++|+.|+..|+.+|+.+|.. ++||+..++..||..+||++.||+|||||||+|+++.....
T Consensus 3 ~~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 3 SGSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 45678889999999999999999987 59999999999999999999999999999999998865544
No 55
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.50 E-value=2.4e-14 Score=116.36 Aligned_cols=56 Identities=25% Similarity=0.350 Sum_probs=54.1
Q ss_pred CCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccc
Q 004454 24 KRKMKTASQLEILEKTYAV---ESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKA 79 (753)
Q Consensus 24 ~Rt~~t~~Ql~~Le~~F~~---~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~ 79 (753)
+|+.||..|+.+|+..|.. ++||+..++..||..+||++.||++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4789999999999999999 9999999999999999999999999999999999985
No 56
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.8e-14 Score=127.38 Aligned_cols=66 Identities=18% Similarity=0.268 Sum_probs=61.8
Q ss_pred cCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHh---------------------CCChHHHhHhhhhhhhhh
Q 004454 18 EAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQL---------------------GLSDRQLQMWFCHRRLKD 76 (753)
Q Consensus 18 ~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~l---------------------gL~~~qVqiWFqNRR~K~ 76 (753)
.+++||.|+.|+..|+.+|+..|..++||+..+|++||..| +|++.+|+|||||||+++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 45788999999999999999999999999999999999999 799999999999999999
Q ss_pred ccccccc
Q 004454 77 RKAPTAK 83 (753)
Q Consensus 77 kr~~~~~ 83 (753)
++.....
T Consensus 83 kr~~~~~ 89 (102)
T 2da6_A 83 AFRQKLA 89 (102)
T ss_dssp HHHHHHH
T ss_pred HHhhHhh
Confidence 9976655
No 57
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.50 E-value=2.4e-14 Score=125.19 Aligned_cols=63 Identities=27% Similarity=0.490 Sum_probs=58.4
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccccc
Q 004454 21 VKTKRKMKTASQLEILEKTY---AVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAK 83 (753)
Q Consensus 21 ~rr~Rt~~t~~Ql~~Le~~F---~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~~ 83 (753)
.||+|+.||..|+.+|+..| ..++||+..++..||..+||++.||++||||||+|+|+.....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 36889999999999999999 9999999999999999999999999999999999999987654
No 58
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.49 E-value=1.9e-14 Score=140.57 Aligned_cols=66 Identities=24% Similarity=0.416 Sum_probs=52.7
Q ss_pred ccCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhcccccc
Q 004454 17 LEAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTA 82 (753)
Q Consensus 17 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~ 82 (753)
..+++||+||.||..|+..|+..|..++||+..+|..||..|||++++|+|||||||+|+||....
T Consensus 95 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 95 AQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp -----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred ccccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 356788899999999999999999999999999999999999999999999999999999997643
No 59
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.49 E-value=1.4e-14 Score=122.28 Aligned_cols=60 Identities=33% Similarity=0.507 Sum_probs=55.7
Q ss_pred CCCCCCCCCHHHHHHHHHHH-hhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhcccc
Q 004454 21 VKTKRKMKTASQLEILEKTY-AVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAP 80 (753)
Q Consensus 21 ~rr~Rt~~t~~Ql~~Le~~F-~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~ 80 (753)
..+.|+.++..|+..||..| ..++||+...|.+||..|||+++||+|||||||+|+|+..
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 45567788899999999999 9999999999999999999999999999999999999864
No 60
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=6.9e-14 Score=122.93 Aligned_cols=61 Identities=33% Similarity=0.470 Sum_probs=55.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhcccccccC
Q 004454 24 KRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAKR 84 (753)
Q Consensus 24 ~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~~~ 84 (753)
++..||..|+.+|+..|..++||+..+|..||..|||++++|+|||||||+|+++......
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~~ 76 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAVL 76 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCCC
T ss_pred ccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhhh
Confidence 3345999999999999999999999999999999999999999999999999998776553
No 61
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.47 E-value=4.9e-14 Score=117.78 Aligned_cols=57 Identities=28% Similarity=0.526 Sum_probs=53.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhcccccc
Q 004454 26 KMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTA 82 (753)
Q Consensus 26 t~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~ 82 (753)
..+|..|+..||..|..++||+...|..||..|||++++|+|||||||+|+|+....
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 468999999999999999999999999999999999999999999999999997643
No 62
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.47 E-value=5.1e-14 Score=123.19 Aligned_cols=61 Identities=23% Similarity=0.315 Sum_probs=57.5
Q ss_pred cCcCCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhcc
Q 004454 18 EAEVKTKRKMKTASQLEILEKTYAV---ESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRK 78 (753)
Q Consensus 18 ~~k~rr~Rt~~t~~Ql~~Le~~F~~---~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr 78 (753)
..+++++|+.||..|+.+|+..|.. ++||+..++..||..+||++.||++||||||+|+|.
T Consensus 24 ~~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 24 KSTKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp EESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 4567778999999999999999999 999999999999999999999999999999999874
No 63
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.47 E-value=3.7e-14 Score=138.01 Aligned_cols=61 Identities=21% Similarity=0.416 Sum_probs=55.2
Q ss_pred CcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccc
Q 004454 19 AEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKA 79 (753)
Q Consensus 19 ~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~ 79 (753)
.++||+||.||..|+..|+..|..++||+..+|..||..|||++.+|+|||||||+|+||.
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 5788899999999999999999999999999999999999999999999999999999986
No 64
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.47 E-value=3.7e-14 Score=116.29 Aligned_cols=52 Identities=23% Similarity=0.488 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccc
Q 004454 28 KTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKA 79 (753)
Q Consensus 28 ~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~ 79 (753)
.|..|+..|+..|..++||+..++.+||..|||++++|++||||||+|+|+.
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 4789999999999999999999999999999999999999999999999974
No 65
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.47 E-value=4.3e-14 Score=126.41 Aligned_cols=66 Identities=21% Similarity=0.348 Sum_probs=54.4
Q ss_pred cCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH------------------hC---CChHHHhHhhhhhhhhh
Q 004454 18 EAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQ------------------LG---LSDRQLQMWFCHRRLKD 76 (753)
Q Consensus 18 ~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~------------------lg---L~~~qVqiWFqNRR~K~ 76 (753)
.++.|+.|+.||..|+.+|+..|..++||+...|.+||.. || |++.+|+|||||||+++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 4578889999999999999999999999999999999999 88 99999999999999999
Q ss_pred ccccccc
Q 004454 77 RKAPTAK 83 (753)
Q Consensus 77 kr~~~~~ 83 (753)
++.+...
T Consensus 86 k~k~~~~ 92 (99)
T 1lfb_A 86 AFRHKLA 92 (99)
T ss_dssp SCCC---
T ss_pred HHhchhh
Confidence 8876543
No 66
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.47 E-value=6e-14 Score=121.72 Aligned_cols=60 Identities=23% Similarity=0.307 Sum_probs=55.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccc
Q 004454 22 KTKRKMKTASQLEILEKTYAV---ESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPT 81 (753)
Q Consensus 22 rr~Rt~~t~~Ql~~Le~~F~~---~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~ 81 (753)
+++|+.||..|+.+|+..|.. ++||+..++..||..+||++.||++||||||+|+|+...
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 456777999999999999999 999999999999999999999999999999999998643
No 67
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.46 E-value=4.2e-14 Score=136.92 Aligned_cols=62 Identities=26% Similarity=0.374 Sum_probs=58.8
Q ss_pred cCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccc
Q 004454 18 EAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKA 79 (753)
Q Consensus 18 ~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~ 79 (753)
.+++||+||.||..|+..|+..|..++||+..++..||..|||++++|+|||||||+|+||.
T Consensus 93 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 93 VQARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred ccCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 35788899999999999999999999999999999999999999999999999999999985
No 68
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.45 E-value=7.6e-14 Score=134.54 Aligned_cols=61 Identities=18% Similarity=0.395 Sum_probs=58.8
Q ss_pred cCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhcc
Q 004454 18 EAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRK 78 (753)
Q Consensus 18 ~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr 78 (753)
.+++||+||.||..|+..|+..|..++||+..++..||..|||++.+|+|||||||+|+||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 4678889999999999999999999999999999999999999999999999999999987
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.3e-13 Score=113.73 Aligned_cols=56 Identities=16% Similarity=0.274 Sum_probs=51.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhcccc
Q 004454 25 RKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAP 80 (753)
Q Consensus 25 Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~ 80 (753)
+..++..|+..|+..|..++||+..+|..||..|||++++|+|||||||+|.++.+
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~~ 62 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISVQ 62 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCSS
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCCC
Confidence 45567999999999999999999999999999999999999999999999988743
No 70
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.44 E-value=7.2e-14 Score=114.65 Aligned_cols=51 Identities=35% Similarity=0.519 Sum_probs=47.4
Q ss_pred HHHHHHHHHHH-hhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhcccc
Q 004454 30 ASQLEILEKTY-AVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAP 80 (753)
Q Consensus 30 ~~Ql~~Le~~F-~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~ 80 (753)
..|+..||..| ..++||+...|.+||..|||+++||+|||||||+|+|+..
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~ 60 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSG 60 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCC
Confidence 45899999999 6799999999999999999999999999999999999754
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.41 E-value=1.9e-13 Score=133.57 Aligned_cols=66 Identities=23% Similarity=0.236 Sum_probs=55.2
Q ss_pred ccCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhcccccc
Q 004454 17 LEAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTA 82 (753)
Q Consensus 17 ~~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~ 82 (753)
...+.||+||.||..|+..|+..|..++||+..+|..||..|||++.||+|||||||+|+|+....
T Consensus 93 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~ 158 (164)
T 2d5v_A 93 RGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLE 158 (164)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC---
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCC
Confidence 356788999999999999999999999999999999999999999999999999999999986543
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.29 E-value=2.9e-12 Score=106.58 Aligned_cols=57 Identities=21% Similarity=0.331 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHHh---hcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccccc
Q 004454 27 MKTASQLEILEKTYA---VESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAK 83 (753)
Q Consensus 27 ~~t~~Ql~~Le~~F~---~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~~ 83 (753)
.|+..|+.+|+..|. .++||+..++..||..+||+..||++||||||+|+++.....
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 63 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQ 63 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC---
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHH
Confidence 699999999999999 999999999999999999999999999999999999875543
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.20 E-value=7e-12 Score=125.15 Aligned_cols=61 Identities=20% Similarity=0.330 Sum_probs=54.0
Q ss_pred cCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC---------------------CChHHHhHhhhhhhhhh
Q 004454 18 EAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLG---------------------LSDRQLQMWFCHRRLKD 76 (753)
Q Consensus 18 ~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lg---------------------L~~~qVqiWFqNRR~K~ 76 (753)
.++.||.|+.|+..|+.+|+..|..++||+...|.+||..+| |++.+|++||||||+++
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 357789999999999999999999999999999999999999 99999999999999998
Q ss_pred cc
Q 004454 77 RK 78 (753)
Q Consensus 77 kr 78 (753)
+.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 74
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.5e-11 Score=100.05 Aligned_cols=46 Identities=22% Similarity=0.476 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhh
Q 004454 30 ASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLK 75 (753)
Q Consensus 30 ~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K 75 (753)
.+|+..|+.+|..+++|+..++..||..+||+.++|+|||||||+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999974
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.05 E-value=1.3e-10 Score=117.11 Aligned_cols=59 Identities=20% Similarity=0.402 Sum_probs=53.6
Q ss_pred cCcCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC---------------------CChHHHhHhhhhhhhhh
Q 004454 18 EAEVKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLG---------------------LSDRQLQMWFCHRRLKD 76 (753)
Q Consensus 18 ~~k~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lg---------------------L~~~qVqiWFqNRR~K~ 76 (753)
.++.||.|+.|+..|+.+|+..|..++||+..+|++||..+| |++.+|++||||||+..
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 467788999999999999999999999999999999999988 89999999999999874
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.02 E-value=3e-10 Score=98.96 Aligned_cols=59 Identities=31% Similarity=0.327 Sum_probs=54.3
Q ss_pred CCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccccccc
Q 004454 25 RKMKTASQLEILEKTYAV---ESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAPTAK 83 (753)
Q Consensus 25 Rt~~t~~Ql~~Le~~F~~---~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~~~~ 83 (753)
-.+|+..++.+|+.+|.. ++||+..++..||..+||++.||++||+|+|.|+++.....
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 457999999999999987 99999999999999999999999999999999998876544
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.84 E-value=1.6e-09 Score=119.38 Aligned_cols=56 Identities=14% Similarity=0.392 Sum_probs=53.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhc
Q 004454 22 KTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDR 77 (753)
Q Consensus 22 rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~k 77 (753)
++.|+.|+..|+..|+..|..++||+..+|.+||..+||+++||+|||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 45678899999999999999999999999999999999999999999999999986
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.11 E-value=2.6e-07 Score=67.07 Aligned_cols=22 Identities=36% Similarity=0.687 Sum_probs=19.3
Q ss_pred HHHhHhhhhhhhhhcccccccC
Q 004454 63 RQLQMWFCHRRLKDRKAPTAKR 84 (753)
Q Consensus 63 ~qVqiWFqNRR~K~kr~~~~~~ 84 (753)
+||+|||||||+|||+......
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~ 22 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDA 22 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHT
T ss_pred CCceeccHHHHHHHHHHhHHHH
Confidence 4899999999999999887653
No 79
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=89.67 E-value=0.27 Score=56.67 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=9.6
Q ss_pred HHHHHHHHhCCChH
Q 004454 50 LRAELSAQLGLSDR 63 (753)
Q Consensus 50 ~r~~LA~~lgL~~~ 63 (753)
....++..|||.+.
T Consensus 29 ll~~V~~~LgL~e~ 42 (575)
T 2i1j_A 29 LFDQVVKTIGLREV 42 (575)
T ss_dssp HHHHHHHHHTCCCG
T ss_pred HHHHHHHHcCCCCc
Confidence 34457888998763
No 80
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.26 E-value=0.7 Score=37.98 Aligned_cols=43 Identities=26% Similarity=0.334 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhh
Q 004454 29 TASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCH 71 (753)
Q Consensus 29 t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqN 71 (753)
++.-.+.|+.+|.....+.......|..+.+|+..||+-||-.
T Consensus 14 ~p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 14 PPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 3344578999999999999999999999999999999999954
No 81
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=81.51 E-value=0.87 Score=52.45 Aligned_cols=9 Identities=11% Similarity=0.453 Sum_probs=3.8
Q ss_pred HHHHhhhhh
Q 004454 589 RSVIKDIED 597 (753)
Q Consensus 589 k~l~~d~e~ 597 (753)
+.|-.|++.
T Consensus 521 ~~L~~el~~ 529 (575)
T 2i1j_A 521 KALKQDLAR 529 (575)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 344444443
No 82
>2y9y_B IOC3, ISWI one complex protein 3; transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_B
Probab=58.83 E-value=14 Score=41.69 Aligned_cols=58 Identities=16% Similarity=0.334 Sum_probs=49.1
Q ss_pred cHHHHHHHHHHHHHhhhcc--ccCCCCHHHHHHHhcCCCh----------------------------------hhHHHH
Q 004454 540 NIGNLLMVWRFLITFADVL--GLWPFTLDEFVQAFHDYDP----------------------------------RLLGEI 583 (753)
Q Consensus 540 ~v~~LL~Vw~FL~~F~~~L--~Lspftlddf~~AL~~~~s----------------------------------~LL~ei 583 (753)
.-+|++.|..|++-|..+| .|..+++.||+..|..+.. ..+.-+
T Consensus 53 YA~DIifImsFinKF~~vf~~~l~nlgpQDfE~GL~L~p~~~~~~~~~~~~g~~~~~~~lY~d~~~~k~~~~~qD~MnlL 132 (624)
T 2y9y_B 53 YAGDIIKLMAFINKFSSFFHSDLQNLSFQDFEVGLDLYPGDPNGSAAGIVKGPEDTSLLLYPDFMAIKDIVYCQDKMNLL 132 (624)
T ss_dssp THHHHHHHHHHHHHTTTTSCTTTTTCCHHHHHHHHTCCSSCSSSSCSSEECSSSCCCEECHHHHSCSHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHhhccCcccCcChHhhhccccCCCCccccccccccccccccchhhhcccccccccccchHHHHHH
Confidence 3599999999999999995 6789999999999986541 478889
Q ss_pred HHHHHHHHHhhhhh
Q 004454 584 HVTLLRSVIKDIED 597 (753)
Q Consensus 584 H~~Llk~l~~d~e~ 597 (753)
.++||.+++....+
T Consensus 133 f~~LL~LvLN~~~~ 146 (624)
T 2y9y_B 133 FLSLLDLTFTENFD 146 (624)
T ss_dssp HHHHHHHHTTTCSC
T ss_pred HHHHHHHHcCcccc
Confidence 99999999985544
No 83
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=44.65 E-value=35 Score=26.15 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=31.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhh
Q 004454 25 RKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFC 70 (753)
Q Consensus 25 Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFq 70 (753)
|..||.+........+. ..........++|..+|++..+|..|..
T Consensus 3 r~~ys~efK~~~~~~~~-~g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYR-NDNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHH-HCTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHH-cCCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 45788887766644443 3333222366899999999999999964
No 84
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=40.48 E-value=8.7 Score=34.77 Aligned_cols=66 Identities=23% Similarity=0.189 Sum_probs=52.6
Q ss_pred hcCCCCCHHHHHHHHHHHhCCCCCcccccccccCCCCCCCCCCccchhhhcccCccchhHHHHHHhccccccccCCCccC
Q 004454 639 LHLNALTWPEILRQFALSAGFGPQLNKRNIEKMYPHDNNEGNDGENIISNLRNGSAVGNAVAIMHEMGLSNLRRSRHRLT 718 (753)
Q Consensus 639 ~~Ld~~TwpEiLR~~l~s~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 718 (753)
.+.+..|=|.|=|.+|+-.|+..-..+ . .|..+++.|+|.
T Consensus 39 el~~~hTTvSVERtVlr~mGidgvda~------------------~-------------iVd~~~e~gLLg--------- 78 (121)
T 3kp1_E 39 DLGKKNTTPSIERSVLLRMGFSSLEAK------------------A-------------IVDKTMDRGLMG--------- 78 (121)
T ss_dssp HHHHHEECHHHHHHHHHHTTCCHHHHH------------------H-------------HHHHHHHTTCGG---------
T ss_pred HHHHcCCccHHHHHHHHHhCCCccchH------------------H-------------HHHHHHHccccc---------
Confidence 367777889999999999988544311 1 344567899876
Q ss_pred CcchhHHHHHHhhhcCCCCCcHHHHHHHHH
Q 004454 719 PGTVKFAAFHVLSLEGSEGLTILEVADKIQ 748 (753)
Q Consensus 719 ~gt~k~~~~~~l~~~g~~g~~~~~~~~~~~ 748 (753)
|+|++.|...-=..|+++.|+|.+|-
T Consensus 79 ----kGAa~~v~~a~~e~g~s~qeaae~lA 104 (121)
T 3kp1_E 79 ----KGAGHIVYKIAKEKNISVREAGLALS 104 (121)
T ss_dssp ----GCHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ----ccHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 89999999999999999999999874
No 85
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=36.35 E-value=64 Score=28.49 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=37.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhh
Q 004454 24 KRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRL 74 (753)
Q Consensus 24 ~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~ 74 (753)
+|..||.++...+-..+..+...+ ..++|..+|++...|..|..++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhh
Confidence 578899999877777665555443 336899999999999999877654
No 86
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=35.96 E-value=71 Score=26.48 Aligned_cols=45 Identities=13% Similarity=0.165 Sum_probs=32.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhh
Q 004454 21 VKTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFC 70 (753)
Q Consensus 21 ~rr~Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFq 70 (753)
.|+.+..|+.++....-..+. ... ...++|..+|++...|..|..
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~-~g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIH-DGE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHH-HTC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHH-CCC----CHHHHHHHHCcCHHHHHHHHH
Confidence 345677899988655555554 222 356789999999999999974
No 87
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=27.59 E-value=1.1e+02 Score=21.16 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhh
Q 004454 27 MKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCH 71 (753)
Q Consensus 27 ~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqN 71 (753)
.++..+...+...+... + ...++|..+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 46777665554555322 2 3568899999999999999753
No 88
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=26.91 E-value=54 Score=23.36 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhh
Q 004454 28 KTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRR 73 (753)
Q Consensus 28 ~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR 73 (753)
++.++...+...+... ....++|..+|++...|.-|+....
T Consensus 6 ~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 6 INKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHcc
Confidence 4555555544445432 2356889999999999999986433
No 89
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=25.63 E-value=96 Score=26.13 Aligned_cols=49 Identities=8% Similarity=0.007 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhcccc
Q 004454 26 KMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAP 80 (753)
Q Consensus 26 t~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~ 80 (753)
..+|..+..+|.-.+.-. .-.++|..||++...|+.+..+-+.|.+...
T Consensus 26 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 74 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLGMER 74 (95)
T ss_dssp -CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 358999999988754332 3478999999999999999887777766543
No 90
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=24.77 E-value=85 Score=26.08 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhcccc
Q 004454 27 MKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAP 80 (753)
Q Consensus 27 ~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~ 80 (753)
.++..+..+|.-.|... ..-.++|..||++...|+.+...-|.+.++..
T Consensus 37 ~L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 36677777776655322 34678999999999999999887777766543
No 91
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=24.73 E-value=77 Score=24.38 Aligned_cols=48 Identities=19% Similarity=-0.013 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhccc
Q 004454 27 MKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKA 79 (753)
Q Consensus 27 ~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~ 79 (753)
.+++.+..+|...|... ..-.++|..+|++...|+.|...-+.+.++.
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~ 62 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLAD 62 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 47788888888765332 3457899999999999999987777766654
No 92
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=22.76 E-value=1.3e+02 Score=25.74 Aligned_cols=47 Identities=17% Similarity=0.029 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhc
Q 004454 25 RKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDR 77 (753)
Q Consensus 25 Rt~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~k 77 (753)
...+|..+..+|.-.+.-. .-.++|..||++...|+.+..+-+.|..
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 4679999999997755322 3478999999999999999876655543
No 93
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=22.19 E-value=1.1e+03 Score=28.69 Aligned_cols=31 Identities=19% Similarity=0.540 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhCCChHHHhHhhhhhhhhhcc
Q 004454 48 EALRAELSAQLGLSDRQLQMWFCHRRLKDRK 78 (753)
Q Consensus 48 ~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr 78 (753)
...-..+|.-||++...+.-|++.|+.+.+.
T Consensus 354 ~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 384 (1080)
T 2dfs_A 354 HDPLTIFCDLMGVDYEEMAHWLCHRKLATAT 384 (1080)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHEEEECC--
T ss_pred hHHHHHHHHHhCCCHHHHHHHhcccEEEeCC
Confidence 3455667888999999999999988776543
No 94
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=20.66 E-value=1.5e+02 Score=22.96 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCChHHHhHhhhhhhhhhcccc
Q 004454 27 MKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRKAP 80 (753)
Q Consensus 27 ~~t~~Ql~~Le~~F~~~~yps~~~r~~LA~~lgL~~~qVqiWFqNRR~K~kr~~ 80 (753)
.+++.+..+|...|..+.+ ....-.++|..+|++...|+.+...-+.|.+...
T Consensus 5 ~L~~~er~il~l~~~l~~~-~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~ 57 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 57 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCC
T ss_pred cCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 4788888888887733211 1233577899999999999999876666666543
No 95
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Probab=20.50 E-value=1.6e+02 Score=30.49 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=20.6
Q ss_pred cCCcchhHHHHHHhhhcCCCCCcHHHHHHHHHh
Q 004454 717 LTPGTVKFAAFHVLSLEGSEGLTILEVADKIQV 749 (753)
Q Consensus 717 l~~gt~k~~~~~~l~~~g~~g~~~~~~~~~~~~ 749 (753)
|++-.+. ..|..+-.-|+..|+..|....+..
T Consensus 287 ls~~e~~-~l~~~~D~d~dG~Is~~EF~~~~~~ 318 (323)
T 1ij5_A 287 SARKKFE-HQFSVVDVDDSKSLSYQEFVMLVLL 318 (323)
T ss_dssp GGCSTHH-HHHHHHTTTTCSEECHHHHHHHHHH
T ss_pred CCHHHHH-HHHHHHCCCCCCcEeHHHHHHHHHH
Confidence 4555543 4566666666666888888777654
Done!