Query 004456
Match_columns 752
No_of_seqs 332 out of 3830
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 23:44:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004456.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004456hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1506 DAP2 Dipeptidyl aminop 100.0 1.1E-42 2.5E-47 385.2 50.8 587 32-743 14-619 (620)
2 PRK10115 protease 2; Provision 100.0 9.1E-39 2E-43 355.4 52.8 526 89-745 129-680 (686)
3 KOG2100 Dipeptidyl aminopeptid 100.0 4E-28 8.6E-33 270.3 47.9 392 304-744 345-751 (755)
4 KOG2281 Dipeptidyl aminopeptid 100.0 2.2E-29 4.8E-34 254.5 34.2 323 392-739 527-866 (867)
5 COG1770 PtrB Protease II [Amin 100.0 5.6E-26 1.2E-30 234.1 50.4 504 157-742 155-680 (682)
6 PF00326 Peptidase_S9: Prolyl 99.9 3.4E-26 7.4E-31 221.6 15.9 196 546-743 5-212 (213)
7 PRK01029 tolB translocation pr 99.9 2.8E-24 6.2E-29 228.0 27.4 266 34-414 140-414 (428)
8 PRK01029 tolB translocation pr 99.9 2.8E-24 6E-29 228.1 25.6 251 4-364 164-426 (428)
9 PRK03629 tolB translocation pr 99.9 3E-23 6.6E-28 221.3 27.6 237 3-343 177-415 (429)
10 PRK03629 tolB translocation pr 99.9 5.6E-23 1.2E-27 219.3 28.0 250 43-412 164-415 (429)
11 PRK05137 tolB translocation pr 99.9 3.7E-23 8E-28 222.4 26.2 236 4-342 181-420 (435)
12 COG4946 Uncharacterized protei 99.9 9.7E-23 2.1E-27 198.7 26.1 369 4-449 58-511 (668)
13 PRK05137 tolB translocation pr 99.9 1.3E-22 2.7E-27 218.2 28.0 254 42-411 165-420 (435)
14 PRK04043 tolB translocation pr 99.9 8.4E-23 1.8E-27 214.9 25.7 232 4-334 168-402 (419)
15 PRK04792 tolB translocation pr 99.9 2.5E-22 5.4E-27 215.0 26.8 235 4-342 197-433 (448)
16 COG1505 Serine proteases of th 99.9 4.1E-21 8.9E-26 195.7 33.6 290 433-742 346-648 (648)
17 PRK02889 tolB translocation pr 99.9 6.3E-22 1.4E-26 211.6 26.0 227 5-333 176-404 (427)
18 PRK02889 tolB translocation pr 99.9 1.4E-21 3E-26 209.0 28.2 246 43-411 164-411 (427)
19 PRK04792 tolB translocation pr 99.9 1.6E-21 3.4E-26 208.9 28.2 249 43-411 183-433 (448)
20 PRK04922 tolB translocation pr 99.9 8.1E-22 1.8E-26 211.6 25.9 235 5-343 184-420 (433)
21 PRK04922 tolB translocation pr 99.9 1.3E-21 2.8E-26 210.1 27.5 252 42-412 167-420 (433)
22 KOG2237 Predicted serine prote 99.9 3.6E-20 7.7E-25 189.7 35.6 291 435-743 390-708 (712)
23 PRK04043 tolB translocation pr 99.9 1.9E-21 4.1E-26 204.7 27.2 247 43-412 155-409 (419)
24 PRK00178 tolB translocation pr 99.9 2.2E-21 4.8E-26 209.2 27.1 227 6-334 180-408 (430)
25 PRK00178 tolB translocation pr 99.9 4.2E-21 9.1E-26 207.1 28.0 252 41-411 161-414 (430)
26 PLN02298 hydrolase, alpha/beta 99.9 9E-20 1.9E-24 189.7 26.5 248 476-748 26-325 (330)
27 PRK01742 tolB translocation pr 99.9 5.6E-20 1.2E-24 197.0 25.2 228 4-342 183-412 (429)
28 PRK10566 esterase; Provisional 99.9 7.3E-20 1.6E-24 182.5 24.3 219 494-741 11-249 (249)
29 PRK01742 tolB translocation pr 99.9 8.2E-20 1.8E-24 195.7 25.9 243 42-411 168-412 (429)
30 PRK13604 luxD acyl transferase 99.9 1E-19 2.2E-24 177.9 22.2 211 481-721 8-246 (307)
31 PRK05077 frsA fermentation/res 99.8 1.5E-19 3.2E-24 190.7 24.2 232 477-741 163-413 (414)
32 PLN02385 hydrolase; alpha/beta 99.8 7.5E-19 1.6E-23 183.8 25.6 236 480-742 59-347 (349)
33 PF01738 DLH: Dienelactone hyd 99.8 1.1E-19 2.4E-24 176.5 16.7 201 495-741 1-218 (218)
34 KOG1455 Lysophospholipase [Lip 99.8 5.7E-19 1.2E-23 166.6 20.5 236 480-740 25-312 (313)
35 PF00930 DPPIV_N: Dipeptidyl p 99.8 1.5E-18 3.3E-23 180.8 25.4 303 39-452 1-353 (353)
36 PHA02857 monoglyceride lipase; 99.8 1.7E-18 3.7E-23 175.5 24.7 221 489-740 7-273 (276)
37 TIGR02800 propeller_TolB tol-p 99.8 3.2E-18 6.9E-23 184.8 25.3 227 5-333 170-398 (417)
38 COG0412 Dienelactone hydrolase 99.8 4.4E-18 9.5E-23 164.3 23.0 212 483-742 3-235 (236)
39 TIGR02800 propeller_TolB tol-p 99.8 8.8E-18 1.9E-22 181.3 27.7 251 40-411 153-405 (417)
40 PRK10749 lysophospholipase L2; 99.8 6.2E-18 1.3E-22 175.1 24.7 230 482-740 30-329 (330)
41 TIGR02821 fghA_ester_D S-formy 99.8 5.6E-18 1.2E-22 170.2 23.6 240 480-741 11-275 (275)
42 PLN02442 S-formylglutathione h 99.8 7.3E-18 1.6E-22 169.5 23.3 241 479-742 15-282 (283)
43 PF05448 AXE1: Acetyl xylan es 99.8 4.1E-18 8.9E-23 171.6 20.1 233 477-740 51-320 (320)
44 PLN02652 hydrolase; alpha/beta 99.8 6.4E-17 1.4E-21 169.1 26.0 232 482-743 110-390 (395)
45 KOG4391 Predicted alpha/beta h 99.8 1.4E-17 3.1E-22 147.1 14.5 236 472-742 44-284 (300)
46 COG0823 TolB Periplasmic compo 99.8 6.9E-17 1.5E-21 168.4 22.2 209 32-334 194-404 (425)
47 PRK10162 acetyl esterase; Prov 99.8 1E-16 2.2E-21 164.1 22.9 232 480-742 55-317 (318)
48 COG1647 Esterase/lipase [Gener 99.7 1.9E-17 4.2E-22 148.1 13.5 198 514-738 16-242 (243)
49 KOG1552 Predicted alpha/beta h 99.7 3.6E-17 7.8E-22 151.6 15.5 221 481-743 34-255 (258)
50 COG0823 TolB Periplasmic compo 99.7 8.3E-16 1.8E-20 160.4 27.5 232 157-465 173-407 (425)
51 COG3458 Acetyl esterase (deace 99.7 6.1E-17 1.3E-21 148.9 15.0 229 478-741 52-318 (321)
52 PRK11460 putative hydrolase; P 99.7 5.7E-16 1.2E-20 150.8 21.1 128 582-742 83-210 (232)
53 COG4946 Uncharacterized protei 99.7 5E-15 1.1E-19 145.3 26.8 250 5-373 248-509 (668)
54 PF00930 DPPIV_N: Dipeptidyl p 99.7 5.5E-16 1.2E-20 161.6 21.3 303 2-372 20-347 (353)
55 PF14583 Pectate_lyase22: Olig 99.7 8E-15 1.7E-19 145.7 26.6 342 18-460 20-383 (386)
56 COG2267 PldB Lysophospholipase 99.7 3.1E-15 6.7E-20 150.3 23.8 231 481-742 8-296 (298)
57 COG4099 Predicted peptidase [G 99.7 3.4E-16 7.3E-21 145.4 12.1 211 490-740 169-385 (387)
58 PF06500 DUF1100: Alpha/beta h 99.7 8.7E-16 1.9E-20 154.9 16.1 228 478-741 161-410 (411)
59 PRK05371 x-prolyl-dipeptidyl a 99.7 4.5E-14 9.7E-19 158.9 30.0 194 546-745 270-524 (767)
60 PF02230 Abhydrolase_2: Phosph 99.7 3.9E-15 8.4E-20 144.0 18.2 131 581-741 85-216 (216)
61 TIGR01840 esterase_phb esteras 99.7 1.9E-15 4.2E-20 145.7 16.0 190 497-704 1-197 (212)
62 PF12715 Abhydrolase_7: Abhydr 99.7 4.5E-16 9.7E-21 153.7 10.6 221 477-716 83-344 (390)
63 TIGR01607 PST-A Plasmodium sub 99.6 1.9E-14 4.1E-19 148.4 21.9 236 487-738 2-331 (332)
64 TIGR03611 RutD pyrimidine util 99.6 5.4E-15 1.2E-19 148.4 17.2 194 513-738 13-256 (257)
65 COG0657 Aes Esterase/lipase [L 99.6 1.9E-14 4E-19 148.1 20.9 225 488-739 57-309 (312)
66 TIGR03343 biphenyl_bphD 2-hydr 99.6 1.1E-14 2.3E-19 148.4 18.4 198 513-738 30-281 (282)
67 PRK00870 haloalkane dehalogena 99.6 2.2E-14 4.7E-19 147.3 19.8 225 481-740 20-301 (302)
68 TIGR03100 hydr1_PEP hydrolase, 99.6 3.2E-14 6.9E-19 142.9 20.5 229 483-738 3-273 (274)
69 TIGR00976 /NonD putative hydro 99.6 2E-14 4.3E-19 158.9 19.9 131 488-638 2-133 (550)
70 PLN02511 hydrolase 99.6 2.3E-14 5E-19 150.9 18.7 238 480-743 69-368 (388)
71 KOG4178 Soluble epoxide hydrol 99.6 1.4E-13 3.1E-18 132.8 22.3 199 513-740 44-320 (322)
72 KOG0293 WD40 repeat-containing 99.6 5.6E-14 1.2E-18 135.7 19.4 271 32-449 226-505 (519)
73 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 1.2E-12 2.7E-17 134.5 31.3 273 60-465 9-284 (300)
74 PF12695 Abhydrolase_5: Alpha/ 99.6 1.6E-14 3.5E-19 130.7 14.9 145 515-719 1-145 (145)
75 KOG0271 Notchless-like WD40 re 99.6 1.5E-13 3.2E-18 131.7 21.3 289 32-443 117-468 (480)
76 COG0400 Predicted esterase [Ge 99.6 8.3E-14 1.8E-18 129.6 19.1 128 582-741 79-206 (207)
77 KOG1515 Arylacetamide deacetyl 99.6 1.4E-13 3.1E-18 137.6 21.7 235 480-740 61-335 (336)
78 PF07859 Abhydrolase_3: alpha/ 99.6 7.4E-15 1.6E-19 142.2 12.2 181 516-721 1-210 (211)
79 PRK10673 acyl-CoA esterase; Pr 99.6 9.5E-14 2.1E-18 139.1 20.6 196 512-739 15-254 (255)
80 TIGR02240 PHA_depoly_arom poly 99.6 1.2E-13 2.6E-18 139.9 21.4 196 513-741 25-267 (276)
81 TIGR03056 bchO_mg_che_rel puta 99.6 7.4E-14 1.6E-18 142.0 19.9 194 513-738 28-278 (278)
82 PLN02824 hydrolase, alpha/beta 99.6 1.5E-13 3.2E-18 140.7 22.2 195 514-740 30-294 (294)
83 PRK10985 putative hydrolase; P 99.6 1.3E-13 2.9E-18 142.2 21.3 232 483-742 32-322 (324)
84 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 2.2E-12 4.9E-17 132.7 30.4 265 4-409 10-285 (300)
85 PLN02965 Probable pheophorbida 99.6 1.5E-13 3.3E-18 137.2 20.0 196 514-739 4-252 (255)
86 TIGR02427 protocat_pcaD 3-oxoa 99.6 3.7E-14 8E-19 141.5 15.3 193 513-737 13-250 (251)
87 PLN03087 BODYGUARD 1 domain co 99.6 2.4E-13 5.3E-18 143.9 21.7 222 485-739 178-478 (481)
88 COG2945 Predicted hydrolase of 99.6 8.8E-14 1.9E-18 121.9 14.8 202 482-738 4-205 (210)
89 KOG4497 Uncharacterized conser 99.6 5.7E-14 1.2E-18 131.8 14.1 344 35-525 13-404 (447)
90 PLN02679 hydrolase, alpha/beta 99.5 3.7E-13 8.1E-18 140.9 21.0 199 513-739 88-356 (360)
91 PLN00021 chlorophyllase 99.5 6.8E-13 1.5E-17 133.9 20.6 208 493-745 37-288 (313)
92 KOG0315 G-protein beta subunit 99.5 3.3E-12 7.2E-17 115.7 22.0 276 2-414 17-299 (311)
93 PF02129 Peptidase_S15: X-Pro 99.5 1.9E-13 4.1E-18 137.3 15.9 213 491-719 1-271 (272)
94 PRK06489 hypothetical protein; 99.5 7.7E-13 1.7E-17 138.9 20.9 173 553-741 103-358 (360)
95 TIGR01738 bioH putative pimelo 99.5 3.5E-13 7.7E-18 133.9 17.6 190 513-737 4-245 (245)
96 PF10503 Esterase_phd: Esteras 99.5 1.6E-13 3.5E-18 129.1 13.9 190 495-704 1-198 (220)
97 TIGR03695 menH_SHCHC 2-succiny 99.5 3.5E-13 7.5E-18 134.4 17.3 195 514-737 2-250 (251)
98 PRK03592 haloalkane dehalogena 99.5 7E-13 1.5E-17 135.7 19.8 198 513-741 27-290 (295)
99 PLN02894 hydrolase, alpha/beta 99.5 1.8E-12 3.8E-17 137.2 23.2 204 513-745 105-390 (402)
100 COG2706 3-carboxymuconate cycl 99.5 2.3E-11 5E-16 117.3 27.9 292 5-412 16-332 (346)
101 TIGR01250 pro_imino_pep_2 prol 99.5 7.3E-13 1.6E-17 135.3 18.3 195 513-738 25-288 (288)
102 TIGR01249 pro_imino_pep_1 prol 99.5 1.1E-12 2.4E-17 134.6 19.2 216 487-741 9-306 (306)
103 PRK10349 carboxylesterase BioH 99.5 6.1E-13 1.3E-17 133.2 16.7 190 514-738 14-254 (256)
104 PLN02872 triacylglycerol lipas 99.5 9.5E-13 2.1E-17 137.0 18.5 245 478-743 40-392 (395)
105 TIGR01836 PHA_synth_III_C poly 99.5 2.4E-12 5.2E-17 134.6 21.5 185 546-740 85-350 (350)
106 COG0429 Predicted hydrolase of 99.5 7.8E-13 1.7E-17 127.2 15.8 228 486-742 53-342 (345)
107 PRK11071 esterase YqiA; Provis 99.5 2.5E-12 5.4E-17 120.8 18.8 178 513-738 1-189 (190)
108 PLN02578 hydrolase 99.5 2.6E-12 5.6E-17 134.5 20.3 173 548-738 106-353 (354)
109 PF08840 BAAT_C: BAAT / Acyl-C 99.5 3.2E-13 7E-18 128.9 12.1 158 584-743 4-213 (213)
110 PRK14875 acetoin dehydrogenase 99.5 2.1E-12 4.5E-17 137.3 19.6 192 513-739 131-370 (371)
111 cd00200 WD40 WD40 domain, foun 99.5 4.1E-11 8.9E-16 121.7 28.1 266 32-445 11-280 (289)
112 PRK07581 hypothetical protein; 99.5 2.5E-12 5.5E-17 134.3 19.1 181 550-742 66-338 (339)
113 TIGR03101 hydr2_PEP hydrolase, 99.5 1.8E-11 3.9E-16 120.0 23.0 205 485-716 3-243 (266)
114 PF12697 Abhydrolase_6: Alpha/ 99.5 2.4E-13 5.3E-18 133.2 10.1 182 516-729 1-225 (228)
115 PRK00175 metX homoserine O-ace 99.4 9.7E-12 2.1E-16 131.2 21.7 71 668-741 304-375 (379)
116 PRK11028 6-phosphogluconolacto 99.4 9E-11 1.9E-15 122.1 28.0 266 3-371 10-292 (330)
117 PRK03204 haloalkane dehalogena 99.4 5.5E-12 1.2E-16 127.9 17.9 196 513-737 34-285 (286)
118 TIGR01392 homoserO_Ac_trn homo 99.4 1E-11 2.2E-16 130.0 20.5 68 668-738 283-351 (351)
119 PF14583 Pectate_lyase22: Olig 99.4 7.6E-11 1.7E-15 117.7 25.0 305 4-403 59-383 (386)
120 PRK08775 homoserine O-acetyltr 99.4 3.6E-12 7.7E-17 133.0 16.0 175 551-740 95-339 (343)
121 KOG0279 G protein beta subunit 99.4 1.2E-10 2.6E-15 107.7 23.6 277 32-449 17-306 (315)
122 PLN03084 alpha/beta hydrolase 99.4 3.1E-11 6.7E-16 125.6 22.3 193 513-738 127-382 (383)
123 KOG0272 U4/U6 small nuclear ri 99.4 1.3E-11 2.9E-16 120.1 17.6 195 32-333 177-376 (459)
124 PF10282 Lactonase: Lactonase, 99.4 6.7E-11 1.5E-15 123.0 24.4 291 5-411 13-332 (345)
125 PRK10439 enterobactin/ferric e 99.4 6.5E-11 1.4E-15 124.1 23.8 208 479-720 177-392 (411)
126 PLN02211 methyl indole-3-aceta 99.4 1.8E-11 3.8E-16 122.9 18.2 194 513-737 18-267 (273)
127 COG3509 LpqC Poly(3-hydroxybut 99.4 3.4E-11 7.3E-16 113.9 18.5 234 483-742 36-309 (312)
128 KOG0291 WD40-repeat-containing 99.4 2.2E-10 4.7E-15 119.6 26.1 300 31-463 308-615 (893)
129 PRK11126 2-succinyl-6-hydroxy- 99.4 1.7E-11 3.7E-16 121.6 17.7 188 513-739 2-241 (242)
130 KOG0279 G protein beta subunit 99.4 8.8E-11 1.9E-15 108.5 20.5 258 4-371 37-302 (315)
131 KOG1838 Alpha/beta hydrolase [ 99.4 7.5E-11 1.6E-15 118.4 21.1 242 477-741 88-389 (409)
132 KOG4409 Predicted hydrolase/ac 99.4 1.7E-11 3.8E-16 118.7 15.5 222 482-739 67-363 (365)
133 KOG0318 WD40 repeat stress pro 99.4 1.7E-09 3.6E-14 108.6 29.3 282 32-412 61-359 (603)
134 PF12740 Chlorophyllase2: Chlo 99.3 6.5E-11 1.4E-15 112.7 18.3 205 496-744 5-254 (259)
135 KOG1454 Predicted hydrolase/ac 99.3 1.9E-11 4.2E-16 124.2 15.7 202 512-741 57-325 (326)
136 KOG0315 G-protein beta subunit 99.3 4.5E-10 9.7E-15 102.1 22.2 269 59-466 17-294 (311)
137 KOG3101 Esterase D [General fu 99.3 1.4E-11 3E-16 109.1 11.9 213 494-721 27-263 (283)
138 KOG0271 Notchless-like WD40 re 99.3 1.3E-10 2.9E-15 111.7 18.2 277 31-371 158-470 (480)
139 KOG1446 Histone H3 (Lys4) meth 99.3 2.9E-09 6.3E-14 100.7 26.6 253 31-414 15-273 (311)
140 KOG0266 WD40 repeat-containing 99.3 4.6E-10 9.9E-15 121.0 24.2 240 32-407 161-413 (456)
141 KOG3043 Predicted hydrolase re 99.3 3.2E-11 7E-16 108.8 12.6 164 547-741 59-241 (242)
142 PF02897 Peptidase_S9_N: Proly 99.3 1.5E-09 3.3E-14 116.7 28.2 277 90-469 127-413 (414)
143 PRK11028 6-phosphogluconolacto 99.3 3.4E-09 7.5E-14 110.3 29.5 223 175-468 80-314 (330)
144 KOG1407 WD40 repeat protein [F 99.3 8E-10 1.7E-14 101.2 20.6 270 32-450 22-296 (313)
145 COG2936 Predicted acyl esteras 99.3 1.3E-10 2.7E-15 122.0 17.3 143 478-638 15-160 (563)
146 KOG0273 Beta-transducin family 99.3 2.2E-09 4.8E-14 106.4 23.6 278 27-459 232-522 (524)
147 KOG2055 WD40 repeat protein [G 99.2 5.1E-10 1.1E-14 110.5 18.6 261 4-371 234-501 (514)
148 COG2706 3-carboxymuconate cycl 99.2 3.1E-08 6.8E-13 96.0 30.4 255 157-469 66-332 (346)
149 KOG4627 Kynurenine formamidase 99.2 1.2E-10 2.6E-15 102.9 12.4 200 480-719 43-247 (270)
150 PF00756 Esterase: Putative es 99.2 1.9E-11 4.1E-16 121.9 8.5 218 492-737 5-251 (251)
151 KOG0293 WD40 repeat-containing 99.2 3.3E-10 7.2E-15 110.1 16.2 196 32-317 271-501 (519)
152 PF03583 LIP: Secretory lipase 99.2 7.4E-10 1.6E-14 111.0 19.5 192 546-746 17-287 (290)
153 KOG4667 Predicted esterase [Li 99.2 3.5E-10 7.5E-15 101.0 14.2 209 481-723 9-243 (269)
154 KOG0318 WD40 repeat stress pro 99.2 9E-09 1.9E-13 103.5 25.8 220 37-373 25-256 (603)
155 cd00200 WD40 WD40 domain, foun 99.2 5E-09 1.1E-13 106.2 24.8 244 5-371 31-280 (289)
156 TIGR02658 TTQ_MADH_Hv methylam 99.2 4.7E-08 1E-12 98.9 30.5 290 61-466 26-336 (352)
157 PRK06765 homoserine O-acetyltr 99.2 5.2E-10 1.1E-14 116.8 16.8 69 668-739 318-387 (389)
158 KOG0291 WD40-repeat-containing 99.2 4E-09 8.7E-14 110.4 22.8 247 32-409 352-618 (893)
159 PF08662 eIF2A: Eukaryotic tra 99.2 6.6E-10 1.4E-14 104.4 15.8 122 155-317 37-162 (194)
160 KOG0973 Histone transcription 99.2 9.7E-10 2.1E-14 120.0 19.1 156 32-267 71-244 (942)
161 PLN02980 2-oxoglutarate decarb 99.2 1.2E-09 2.6E-14 134.3 22.2 200 513-741 1371-1640(1655)
162 KOG0286 G-protein beta subunit 99.2 2.1E-08 4.6E-13 93.6 24.6 270 30-443 55-332 (343)
163 KOG0305 Anaphase promoting com 99.2 3E-09 6.5E-14 110.2 20.9 252 4-373 196-452 (484)
164 PRK05855 short chain dehydroge 99.2 3.8E-10 8.2E-15 127.9 15.6 212 490-741 10-293 (582)
165 PF10282 Lactonase: Lactonase, 99.2 1E-08 2.2E-13 106.7 25.0 300 62-469 13-333 (345)
166 PF03403 PAF-AH_p_II: Platelet 99.1 1.3E-09 2.9E-14 113.0 17.1 188 511-743 98-361 (379)
167 KOG2055 WD40 repeat protein [G 99.1 4.1E-09 8.9E-14 104.2 19.3 277 31-445 214-501 (514)
168 KOG0273 Beta-transducin family 99.1 6.1E-09 1.3E-13 103.3 19.9 232 32-373 278-514 (524)
169 PRK07868 acyl-CoA synthetase; 99.1 3.3E-09 7.2E-14 125.9 21.5 231 494-748 48-369 (994)
170 PRK13616 lipoprotein LpqB; Pro 99.1 4.6E-09 9.9E-14 114.8 20.5 178 32-293 351-533 (591)
171 KOG0973 Histone transcription 99.1 3E-09 6.4E-14 116.3 18.6 117 175-331 130-252 (942)
172 KOG2096 WD40 repeat protein [G 99.1 1.9E-08 4.1E-13 94.9 21.4 280 32-445 88-392 (420)
173 TIGR01838 PHA_synth_I poly(R)- 99.1 8.1E-09 1.8E-13 110.8 21.8 132 484-638 166-303 (532)
174 TIGR02658 TTQ_MADH_Hv methylam 99.1 6.8E-08 1.5E-12 97.8 27.0 93 5-104 27-122 (352)
175 PF08662 eIF2A: Eukaryotic tra 99.1 3.3E-09 7.1E-14 99.8 16.0 152 33-260 8-161 (194)
176 KOG0263 Transcription initiati 99.1 2.7E-09 6E-14 112.6 16.4 206 167-460 443-649 (707)
177 KOG2984 Predicted hydrolase [G 99.1 2.8E-10 6.1E-15 100.2 7.2 173 554-739 70-275 (277)
178 PF09752 DUF2048: Uncharacteri 99.1 5.9E-09 1.3E-13 102.8 17.3 218 494-737 76-346 (348)
179 KOG0272 U4/U6 small nuclear ri 99.1 1.5E-09 3.4E-14 106.0 12.7 187 32-320 263-452 (459)
180 COG3571 Predicted hydrolase of 99.1 1E-08 2.2E-13 86.9 15.5 168 513-721 14-183 (213)
181 PF00561 Abhydrolase_1: alpha/ 99.1 2.8E-10 6E-15 111.9 7.4 164 556-731 1-226 (230)
182 KOG0266 WD40 repeat-containing 99.0 4E-08 8.7E-13 106.1 24.3 229 32-371 205-441 (456)
183 KOG0286 G-protein beta subunit 99.0 6.8E-08 1.5E-12 90.3 21.4 225 157-462 77-305 (343)
184 COG0627 Predicted esterase [Ge 99.0 3.2E-09 6.9E-14 106.0 13.8 137 603-743 153-314 (316)
185 PF08538 DUF1749: Protein of u 99.0 2.6E-09 5.7E-14 103.8 12.6 207 513-737 33-302 (303)
186 PTZ00421 coronin; Provisional 99.0 1E-07 2.2E-12 102.6 26.2 188 157-410 98-297 (493)
187 PF02897 Peptidase_S9_N: Proly 99.0 6.4E-08 1.4E-12 104.2 24.7 273 33-411 126-412 (414)
188 PF02239 Cytochrom_D1: Cytochr 99.0 9.2E-08 2E-12 99.4 24.0 288 34-465 40-352 (369)
189 KOG2315 Predicted translation 99.0 5E-07 1.1E-11 92.2 28.1 324 33-447 37-375 (566)
190 PF07224 Chlorophyllase: Chlor 99.0 9.1E-09 2E-13 95.3 14.3 207 494-744 32-278 (307)
191 PLN00181 protein SPA1-RELATED; 99.0 3.9E-07 8.5E-12 106.3 31.6 229 32-372 485-728 (793)
192 KOG2112 Lysophospholipase [Lip 99.0 3.4E-08 7.4E-13 89.3 16.9 114 598-739 89-203 (206)
193 KOG1407 WD40 repeat protein [F 99.0 1.9E-07 4.1E-12 86.0 21.1 252 2-373 39-293 (313)
194 COG2382 Fes Enterochelin ester 99.0 2.3E-08 4.9E-13 96.0 15.7 223 480-742 67-297 (299)
195 PTZ00420 coronin; Provisional 99.0 3.5E-07 7.6E-12 99.1 26.6 137 157-333 97-249 (568)
196 KOG0305 Anaphase promoting com 98.9 1.7E-07 3.6E-12 97.4 22.8 270 32-449 179-454 (484)
197 KOG0265 U5 snRNP-specific prot 98.9 6.2E-07 1.4E-11 84.4 23.9 245 32-406 49-299 (338)
198 KOG0296 Angio-associated migra 98.9 4.8E-07 1E-11 87.3 23.6 115 32-222 108-225 (399)
199 KOG2314 Translation initiation 98.9 7.9E-07 1.7E-11 90.4 25.8 304 32-446 251-557 (698)
200 KOG2564 Predicted acetyltransf 98.9 4.5E-08 9.7E-13 91.5 15.5 124 481-634 49-179 (343)
201 KOG2624 Triglyceride lipase-ch 98.9 4.3E-08 9.3E-13 100.6 16.5 241 478-741 44-399 (403)
202 KOG2382 Predicted alpha/beta h 98.9 6.5E-08 1.4E-12 94.2 16.7 204 511-741 50-314 (315)
203 KOG3847 Phospholipase A2 (plat 98.9 3.3E-08 7.2E-13 93.7 14.1 189 510-743 115-374 (399)
204 KOG4497 Uncharacterized conser 98.9 2E-07 4.3E-12 88.5 18.5 285 32-371 93-421 (447)
205 KOG2314 Translation initiation 98.9 2.7E-07 5.9E-12 93.7 20.5 269 5-371 282-556 (698)
206 PTZ00421 coronin; Provisional 98.9 5E-07 1.1E-11 97.3 24.0 200 32-334 77-292 (493)
207 PF02239 Cytochrom_D1: Cytochr 98.9 1.5E-07 3.2E-12 97.9 19.1 289 6-410 59-354 (369)
208 KOG0263 Transcription initiati 98.9 6.1E-08 1.3E-12 102.6 16.2 215 12-333 435-650 (707)
209 PRK10115 protease 2; Provision 98.9 1.9E-06 4.2E-11 97.3 29.3 263 32-414 128-405 (686)
210 KOG1446 Histone H3 (Lys4) meth 98.9 5.3E-06 1.2E-10 79.0 27.2 264 157-503 36-303 (311)
211 PF05728 UPF0227: Uncharacteri 98.8 1.1E-07 2.5E-12 87.7 15.5 121 602-737 59-186 (187)
212 PF02273 Acyl_transf_2: Acyl t 98.8 5E-07 1.1E-11 83.0 19.1 210 485-721 5-239 (294)
213 KOG0772 Uncharacterized conser 98.8 1.3E-06 2.9E-11 88.0 23.6 247 32-371 169-428 (641)
214 KOG0296 Angio-associated migra 98.8 3.8E-06 8.3E-11 81.3 25.4 282 32-465 66-361 (399)
215 KOG0282 mRNA splicing factor [ 98.8 1.6E-07 3.4E-12 93.9 16.3 224 157-462 237-464 (503)
216 COG5354 Uncharacterized protei 98.8 2.6E-06 5.7E-11 86.0 24.5 293 32-446 73-379 (561)
217 cd00312 Esterase_lipase Estera 98.8 1.7E-08 3.7E-13 111.3 10.2 129 494-638 78-214 (493)
218 KOG1273 WD40 repeat protein [G 98.8 6.3E-07 1.4E-11 84.8 17.8 257 33-415 26-292 (405)
219 COG4188 Predicted dienelactone 98.8 2E-08 4.3E-13 99.4 8.1 217 482-719 38-294 (365)
220 PTZ00420 coronin; Provisional 98.8 8.9E-06 1.9E-10 88.4 29.1 229 170-471 69-304 (568)
221 COG4757 Predicted alpha/beta h 98.8 1.5E-07 3.2E-12 85.6 12.8 222 485-737 8-280 (281)
222 KOG0772 Uncharacterized conser 98.7 6.6E-07 1.4E-11 90.1 18.3 241 157-461 189-446 (641)
223 KOG0275 Conserved WD40 repeat- 98.7 3E-07 6.4E-12 86.9 14.3 249 32-413 215-477 (508)
224 PF07433 DUF1513: Protein of u 98.7 9.1E-06 2E-10 79.4 25.1 227 32-334 6-249 (305)
225 KOG0645 WD40 repeat protein [G 98.7 1.8E-06 4E-11 80.1 19.0 195 32-328 16-223 (312)
226 TIGR01839 PHA_synth_II poly(R) 98.7 6.4E-07 1.4E-11 95.1 18.2 87 546-638 238-329 (560)
227 PRK13616 lipoprotein LpqB; Pro 98.7 1E-06 2.2E-11 96.6 20.5 145 157-334 379-529 (591)
228 PLN00181 protein SPA1-RELATED; 98.7 4.7E-06 1E-10 97.4 26.9 230 32-371 534-782 (793)
229 KOG2139 WD40 repeat protein [G 98.7 9.4E-07 2E-11 85.2 17.0 238 32-373 100-366 (445)
230 KOG2096 WD40 repeat protein [G 98.7 1.5E-06 3.3E-11 82.3 17.5 167 157-371 209-392 (420)
231 KOG0282 mRNA splicing factor [ 98.7 4.4E-07 9.6E-12 90.8 14.7 222 5-334 237-464 (503)
232 KOG2139 WD40 repeat protein [G 98.7 3.8E-07 8.3E-12 87.9 13.3 108 27-197 192-303 (445)
233 KOG2315 Predicted translation 98.7 2.5E-06 5.5E-11 87.2 19.5 224 6-317 147-373 (566)
234 KOG0265 U5 snRNP-specific prot 98.6 7.3E-06 1.6E-10 77.4 20.7 221 157-461 69-297 (338)
235 KOG0283 WD40 repeat-containing 98.6 4E-06 8.6E-11 90.0 21.6 206 175-461 370-577 (712)
236 KOG2551 Phospholipase/carboxyh 98.6 7.7E-07 1.7E-11 81.1 13.8 125 584-742 90-222 (230)
237 PF06821 Ser_hydrolase: Serine 98.6 1.2E-06 2.6E-11 80.1 14.8 100 602-721 55-155 (171)
238 KOG0640 mRNA cleavage stimulat 98.6 7E-06 1.5E-10 77.6 19.4 259 32-414 114-394 (430)
239 COG3208 GrsT Predicted thioest 98.6 8.3E-07 1.8E-11 82.7 13.3 61 671-742 174-234 (244)
240 COG2272 PnbA Carboxylesterase 98.6 1E-07 2.2E-12 97.7 7.8 129 494-638 79-218 (491)
241 KOG1274 WD40 repeat protein [G 98.6 3E-06 6.4E-11 91.6 19.0 180 33-318 99-290 (933)
242 COG2819 Predicted hydrolase of 98.6 6.1E-06 1.3E-10 78.5 18.7 112 591-719 126-244 (264)
243 PF03959 FSH1: Serine hydrolas 98.6 5.2E-07 1.1E-11 86.5 11.9 103 589-721 93-203 (212)
244 COG5354 Uncharacterized protei 98.6 1.2E-05 2.6E-10 81.4 21.1 245 32-371 34-293 (561)
245 PF06342 DUF1057: Alpha/beta h 98.6 1.4E-05 3E-10 76.2 20.3 129 482-636 6-136 (297)
246 KOG0284 Polyadenylation factor 98.5 9.1E-07 2E-11 86.6 12.2 267 32-371 98-369 (464)
247 PF08450 SGL: SMP-30/Gluconola 98.5 2.6E-05 5.6E-10 77.3 23.1 143 157-334 22-166 (246)
248 KOG0275 Conserved WD40 repeat- 98.5 1.8E-06 3.8E-11 81.8 13.6 227 157-467 235-474 (508)
249 cd00707 Pancreat_lipase_like P 98.5 4.3E-07 9.2E-12 90.7 10.1 109 513-637 36-147 (275)
250 KOG1553 Predicted alpha/beta h 98.5 4.2E-07 9E-12 87.3 8.3 185 480-688 212-398 (517)
251 PF00135 COesterase: Carboxyle 98.5 2.6E-07 5.7E-12 103.5 8.4 130 494-636 108-244 (535)
252 PF08450 SGL: SMP-30/Gluconola 98.5 7.7E-06 1.7E-10 81.0 17.8 194 33-317 42-244 (246)
253 TIGR03230 lipo_lipase lipoprot 98.5 1.5E-06 3.2E-11 90.8 13.0 109 513-636 41-153 (442)
254 KOG0639 Transducin-like enhanc 98.5 7.1E-06 1.5E-10 82.5 16.7 237 20-372 409-653 (705)
255 KOG1524 WD40 repeat-containing 98.5 1.9E-06 4.1E-11 87.3 12.8 165 33-317 107-275 (737)
256 PF10340 DUF2424: Protein of u 98.4 9.6E-06 2.1E-10 82.0 17.3 201 496-720 107-350 (374)
257 KOG1274 WD40 repeat protein [G 98.4 2.7E-05 5.8E-10 84.5 21.1 186 209-461 76-263 (933)
258 PF06057 VirJ: Bacterial virul 98.4 3.4E-06 7.3E-11 76.1 12.2 170 540-738 14-190 (192)
259 KOG0284 Polyadenylation factor 98.4 1.6E-06 3.4E-11 85.0 10.9 185 88-373 98-285 (464)
260 COG2021 MET2 Homoserine acetyl 98.4 7.1E-06 1.5E-10 81.4 15.6 153 580-739 126-367 (368)
261 PF06433 Me-amine-dh_H: Methyl 98.4 0.00011 2.3E-09 72.9 23.2 226 176-467 96-327 (342)
262 KOG2919 Guanine nucleotide-bin 98.4 1.7E-05 3.6E-10 75.7 16.8 187 157-406 133-331 (406)
263 COG1073 Hydrolases of the alph 98.4 2.3E-06 5E-11 87.7 11.5 78 660-741 218-298 (299)
264 KOG1009 Chromatin assembly com 98.4 4.1E-05 8.9E-10 75.4 18.8 128 6-196 39-187 (434)
265 KOG0639 Transducin-like enhanc 98.4 1.3E-05 2.8E-10 80.7 15.6 218 6-331 441-664 (705)
266 KOG0645 WD40 repeat protein [G 98.4 0.00011 2.3E-09 68.7 20.4 150 175-371 62-214 (312)
267 TIGR01849 PHB_depoly_PhaZ poly 98.3 2E-05 4.4E-10 81.5 17.3 70 669-740 333-406 (406)
268 PF10230 DUF2305: Uncharacteri 98.3 1E-05 2.2E-10 80.3 13.3 107 513-637 2-122 (266)
269 PRK04940 hypothetical protein; 98.3 4.2E-05 9.1E-10 69.0 15.7 116 602-738 60-178 (180)
270 KOG1445 Tumor-specific antigen 98.3 1.2E-05 2.6E-10 83.2 13.4 211 29-333 626-845 (1012)
271 KOG0319 WD40-repeat-containing 98.3 0.00058 1.3E-08 72.7 26.0 193 36-333 25-223 (775)
272 COG0596 MhpC Predicted hydrola 98.3 3.7E-05 8E-10 76.8 16.8 71 556-636 51-122 (282)
273 KOG0288 WD40 repeat protein Ti 98.2 1.7E-05 3.7E-10 78.1 13.1 244 6-371 198-450 (459)
274 KOG2919 Guanine nucleotide-bin 98.2 7.5E-05 1.6E-09 71.4 16.2 205 183-465 120-333 (406)
275 KOG2048 WD40 repeat protein [G 98.2 0.00087 1.9E-08 70.7 24.8 205 242-523 383-593 (691)
276 COG1506 DAP2 Dipeptidyl aminop 98.2 0.00066 1.4E-08 76.5 26.3 291 28-412 57-351 (620)
277 KOG1539 WD repeat protein [Gen 98.2 0.00081 1.8E-08 72.6 24.8 217 155-458 420-646 (910)
278 KOG2394 WD40 protein DMR-N9 [G 98.2 0.00071 1.5E-08 69.3 23.1 65 296-372 288-352 (636)
279 KOG0643 Translation initiation 98.2 0.00064 1.4E-08 63.5 20.8 166 157-371 74-250 (327)
280 COG3386 Gluconolactonase [Carb 98.1 0.0016 3.4E-08 65.5 24.6 145 157-332 47-193 (307)
281 PLN02919 haloacid dehalogenase 98.1 0.0015 3.1E-08 77.8 28.3 127 177-334 685-835 (1057)
282 COG3545 Predicted esterase of 98.1 0.00022 4.8E-09 62.9 15.8 117 602-738 59-177 (181)
283 PF07433 DUF1513: Protein of u 98.1 0.00029 6.3E-09 69.1 18.4 210 157-412 28-256 (305)
284 KOG0306 WD40-repeat-containing 98.1 0.00038 8.3E-09 74.1 19.9 145 175-372 509-654 (888)
285 TIGR03502 lipase_Pla1_cef extr 98.1 2.5E-05 5.5E-10 87.0 11.9 93 513-623 449-576 (792)
286 KOG2106 Uncharacterized conser 98.1 0.0022 4.8E-08 65.3 24.1 150 175-383 369-518 (626)
287 KOG0288 WD40 repeat protein Ti 98.1 9.5E-05 2.1E-09 73.0 14.1 269 32-444 177-449 (459)
288 PF10647 Gmad1: Lipoprotein Lp 98.0 0.00046 1E-08 68.0 19.1 72 19-104 10-83 (253)
289 KOG0306 WD40-repeat-containing 98.0 0.0012 2.6E-08 70.4 22.6 199 32-333 375-583 (888)
290 PF05677 DUF818: Chlamydia CHL 98.0 0.00039 8.4E-09 68.4 17.7 120 480-623 110-236 (365)
291 PF04762 IKI3: IKI3 family; I 98.0 0.00077 1.7E-08 78.5 23.3 84 157-260 237-322 (928)
292 KOG1445 Tumor-specific antigen 98.0 8.3E-05 1.8E-09 77.2 13.5 157 175-373 628-785 (1012)
293 KOG1009 Chromatin assembly com 98.0 0.00047 1E-08 68.2 18.0 61 175-261 124-184 (434)
294 COG3243 PhaC Poly(3-hydroxyalk 98.0 0.00013 2.9E-09 73.5 14.6 88 546-638 130-218 (445)
295 KOG1524 WD40 repeat-containing 98.0 0.00029 6.4E-09 71.9 16.8 158 157-369 85-244 (737)
296 PF11339 DUF3141: Protein of u 98.0 0.00035 7.5E-09 72.3 17.5 49 669-719 293-348 (581)
297 COG3386 Gluconolactonase [Carb 98.0 0.002 4.3E-08 64.9 22.5 126 157-319 143-276 (307)
298 KOG0640 mRNA cleavage stimulat 98.0 0.00047 1E-08 65.6 16.7 251 170-502 167-427 (430)
299 KOG0647 mRNA export protein (c 98.0 0.0068 1.5E-07 57.9 24.1 204 21-333 19-229 (347)
300 KOG0643 Translation initiation 98.0 0.0015 3.2E-08 61.2 19.1 190 175-443 53-248 (327)
301 KOG0310 Conserved WD40 repeat- 98.0 0.0019 4.2E-08 65.5 21.4 264 32-445 28-298 (487)
302 PF12146 Hydrolase_4: Putative 98.0 2.6E-05 5.7E-10 60.7 6.6 75 492-590 1-78 (79)
303 TIGR02171 Fb_sc_TIGR02171 Fibr 97.9 0.00051 1.1E-08 76.3 18.7 254 6-346 330-599 (912)
304 KOG3253 Predicted alpha/beta h 97.9 0.00028 6.2E-09 73.6 15.5 103 597-722 245-348 (784)
305 KOG1332 Vesicle coat complex C 97.9 0.0013 2.8E-08 60.8 17.9 237 4-333 32-289 (299)
306 KOG0295 WD40 repeat-containing 97.9 0.001 2.3E-08 64.9 17.8 235 157-466 130-370 (406)
307 KOG1063 RNA polymerase II elon 97.9 0.00049 1.1E-08 72.6 16.8 76 242-329 526-601 (764)
308 PF06433 Me-amine-dh_H: Methyl 97.9 0.00012 2.7E-09 72.5 11.9 291 5-334 17-322 (342)
309 PF06028 DUF915: Alpha/beta hy 97.9 0.00027 5.8E-09 68.8 14.0 151 579-737 82-252 (255)
310 KOG0307 Vesicle coat complex C 97.9 0.00023 5E-09 79.4 15.0 260 32-408 8-289 (1049)
311 PF12048 DUF3530: Protein of u 97.9 0.0019 4.1E-08 65.5 20.6 206 492-740 70-309 (310)
312 PF10647 Gmad1: Lipoprotein Lp 97.9 0.002 4.4E-08 63.5 20.3 181 69-333 7-198 (253)
313 KOG0303 Actin-binding protein 97.9 0.0017 3.8E-08 64.0 18.7 161 175-384 132-294 (472)
314 KOG2048 WD40 repeat protein [G 97.8 0.023 5E-07 60.4 27.7 223 6-334 48-277 (691)
315 PF04762 IKI3: IKI3 family; I 97.8 0.029 6.3E-07 65.7 31.9 111 243-371 211-323 (928)
316 PLN02919 haloacid dehalogenase 97.8 0.0035 7.5E-08 74.6 24.5 127 176-334 741-890 (1057)
317 KOG0295 WD40 repeat-containing 97.8 0.00032 6.9E-09 68.3 12.7 229 5-334 130-366 (406)
318 KOG0771 Prolactin regulatory e 97.8 0.0003 6.5E-09 70.0 12.8 200 33-332 147-356 (398)
319 PF05705 DUF829: Eukaryotic pr 97.8 0.00057 1.2E-08 67.3 15.1 64 672-737 177-240 (240)
320 KOG0319 WD40-repeat-containing 97.8 0.00094 2E-08 71.1 16.9 183 157-410 40-229 (775)
321 PF11144 DUF2920: Protein of u 97.8 0.0012 2.6E-08 67.2 16.7 136 577-714 157-332 (403)
322 KOG0771 Prolactin regulatory e 97.8 0.00025 5.3E-09 70.6 11.5 148 32-260 188-342 (398)
323 KOG1036 Mitotic spindle checkp 97.8 0.028 6.1E-07 54.1 24.5 189 20-317 4-196 (323)
324 KOG1273 WD40 repeat protein [G 97.8 0.0019 4.1E-08 61.9 16.6 201 176-459 25-225 (405)
325 PRK02888 nitrous-oxide reducta 97.8 0.0027 5.9E-08 68.4 19.9 54 38-106 200-254 (635)
326 PRK02888 nitrous-oxide reducta 97.7 0.0056 1.2E-07 66.1 21.9 134 157-333 215-352 (635)
327 COG1770 PtrB Protease II [Amin 97.7 0.019 4.1E-07 61.7 25.1 270 32-414 130-407 (682)
328 PF07819 PGAP1: PGAP1-like pro 97.7 0.00064 1.4E-08 65.5 13.3 56 581-636 61-122 (225)
329 TIGR02171 Fb_sc_TIGR02171 Fibr 97.7 0.0052 1.1E-07 68.6 21.6 91 43-191 319-415 (912)
330 KOG4840 Predicted hydrolases o 97.7 0.0012 2.5E-08 60.2 13.6 88 546-640 57-147 (299)
331 KOG0278 Serine/threonine kinas 97.7 0.00055 1.2E-08 63.2 11.7 150 167-371 135-286 (334)
332 KOG0264 Nucleosome remodeling 97.7 0.0032 6.9E-08 63.4 17.9 220 175-456 178-402 (422)
333 COG4947 Uncharacterized protei 97.7 7.6E-05 1.6E-09 64.6 5.7 119 586-719 87-215 (227)
334 KOG0283 WD40 repeat-containing 97.7 0.0012 2.6E-08 71.5 15.7 164 157-372 390-566 (712)
335 KOG0289 mRNA splicing factor [ 97.7 0.0035 7.6E-08 62.7 17.6 188 28-317 301-495 (506)
336 PF07676 PD40: WD40-like Beta 97.7 0.0001 2.2E-09 48.6 5.0 38 22-66 2-39 (39)
337 KOG0289 mRNA splicing factor [ 97.7 0.0031 6.6E-08 63.1 16.9 195 32-333 263-463 (506)
338 KOG0278 Serine/threonine kinas 97.6 0.001 2.2E-08 61.6 12.5 193 32-333 102-300 (334)
339 KOG2106 Uncharacterized conser 97.6 0.048 1E-06 56.0 25.2 278 32-465 202-484 (626)
340 KOG0277 Peroxisomal targeting 97.6 0.0048 1E-07 57.5 16.5 223 4-330 37-265 (311)
341 KOG0307 Vesicle coat complex C 97.6 0.00082 1.8E-08 75.3 13.7 233 6-334 40-286 (1049)
342 KOG0313 Microtubule binding pr 97.6 0.0093 2E-07 58.8 19.2 236 32-371 107-364 (423)
343 PF10142 PhoPQ_related: PhoPQ- 97.6 0.0013 2.8E-08 67.2 13.8 146 591-746 161-326 (367)
344 COG3150 Predicted esterase [Ge 97.6 0.001 2.3E-08 57.8 10.7 139 578-738 41-187 (191)
345 PF00975 Thioesterase: Thioest 97.5 0.0026 5.6E-08 62.2 15.3 100 514-636 1-103 (229)
346 KOG0650 WD40 repeat nucleolar 97.5 0.016 3.5E-07 60.6 20.6 105 244-373 524-628 (733)
347 PF07519 Tannase: Tannase and 97.5 0.0033 7.2E-08 67.7 16.6 66 674-741 354-428 (474)
348 KOG4378 Nuclear protein COP1 [ 97.5 0.0049 1.1E-07 62.7 15.8 176 32-310 123-305 (673)
349 KOG1007 WD repeat protein TSSC 97.5 0.0091 2E-07 56.7 16.5 220 3-317 38-277 (370)
350 KOG0310 Conserved WD40 repeat- 97.4 0.0092 2E-07 60.8 17.5 225 32-371 70-298 (487)
351 KOG2110 Uncharacterized conser 97.4 0.0015 3.2E-08 64.0 11.6 115 32-219 131-250 (391)
352 KOG0302 Ribosome Assembly prot 97.4 0.0057 1.2E-07 60.2 15.3 139 157-332 234-380 (440)
353 COG3490 Uncharacterized protei 97.4 0.029 6.2E-07 53.5 19.3 238 19-334 58-312 (366)
354 KOG0264 Nucleosome remodeling 97.4 0.024 5.2E-07 57.4 19.5 157 175-373 228-394 (422)
355 KOG4283 Transcription-coupled 97.4 0.0048 1E-07 58.6 13.5 149 2-220 121-279 (397)
356 PF03096 Ndr: Ndr family; Int 97.4 0.01 2.2E-07 57.9 16.2 220 488-738 5-277 (283)
357 KOG1523 Actin-related protein 97.4 0.0093 2E-07 57.6 15.3 221 175-462 11-238 (361)
358 KOG1538 Uncharacterized conser 97.3 0.0056 1.2E-07 64.5 14.9 57 32-103 14-70 (1081)
359 KOG0290 Conserved WD40 repeat- 97.3 0.026 5.6E-07 53.8 17.6 130 168-333 189-319 (364)
360 PTZ00472 serine carboxypeptida 97.3 0.0024 5.3E-08 68.7 12.7 142 492-638 60-217 (462)
361 KOG0316 Conserved WD40 repeat- 97.3 0.021 4.5E-07 52.8 16.4 194 32-334 19-215 (307)
362 KOG1516 Carboxylesterase and r 97.3 0.00037 8E-09 78.0 6.8 131 494-637 96-232 (545)
363 KOG1034 Transcriptional repres 97.3 0.0085 1.8E-07 58.0 14.3 99 59-222 112-216 (385)
364 KOG0277 Peroxisomal targeting 97.3 0.012 2.7E-07 54.8 14.8 238 33-371 11-253 (311)
365 PLN02733 phosphatidylcholine-s 97.3 0.0012 2.6E-08 69.8 9.7 87 546-638 112-202 (440)
366 KOG1539 WD repeat protein [Gen 97.3 0.015 3.2E-07 63.3 17.5 81 277-373 557-638 (910)
367 COG3490 Uncharacterized protei 97.2 0.062 1.4E-06 51.4 18.5 140 157-319 91-245 (366)
368 KOG4378 Nuclear protein COP1 [ 97.2 0.011 2.4E-07 60.3 14.4 136 157-334 143-282 (673)
369 KOG0316 Conserved WD40 repeat- 97.2 0.017 3.7E-07 53.3 14.3 200 175-465 18-218 (307)
370 KOG1007 WD repeat protein TSSC 97.2 0.028 6E-07 53.6 15.9 114 32-218 125-246 (370)
371 KOG0294 WD40 repeat-containing 97.1 0.021 4.5E-07 55.1 15.1 136 32-260 45-186 (362)
372 KOG2394 WD40 protein DMR-N9 [G 97.1 0.0037 7.9E-08 64.4 10.7 91 175-308 291-384 (636)
373 KOG0299 U3 snoRNP-associated p 97.1 0.038 8.1E-07 56.1 17.3 58 33-104 205-262 (479)
374 PF00151 Lipase: Lipase; Inte 97.1 0.00052 1.1E-08 70.0 4.6 109 512-636 70-186 (331)
375 KOG1920 IkappaB kinase complex 97.1 0.069 1.5E-06 61.0 21.1 83 157-259 222-306 (1265)
376 KOG0641 WD40 repeat protein [G 97.0 0.26 5.7E-06 45.2 21.1 72 244-334 234-305 (350)
377 KOG1920 IkappaB kinase complex 97.0 0.26 5.6E-06 56.6 24.5 176 175-389 69-277 (1265)
378 KOG0647 mRNA export protein (c 97.0 0.057 1.2E-06 51.9 16.6 128 157-334 50-186 (347)
379 COG3391 Uncharacterized conser 97.0 0.21 4.5E-06 52.8 23.1 214 176-466 75-289 (381)
380 KOG1523 Actin-related protein 97.0 0.063 1.4E-06 52.1 16.8 61 33-105 13-74 (361)
381 PF07082 DUF1350: Protein of u 97.0 0.05 1.1E-06 51.7 16.1 155 545-719 37-204 (250)
382 KOG1963 WD40 repeat protein [G 96.9 0.16 3.5E-06 56.0 21.6 103 301-446 208-312 (792)
383 COG4814 Uncharacterized protei 96.9 0.013 2.9E-07 55.0 11.7 148 581-739 117-286 (288)
384 PF07676 PD40: WD40-like Beta 96.9 0.0023 4.9E-08 42.1 5.0 37 292-328 2-39 (39)
385 KOG0268 Sof1-like rRNA process 96.9 0.024 5.2E-07 55.7 13.7 162 156-371 166-334 (433)
386 PF01674 Lipase_2: Lipase (cla 96.9 0.003 6.5E-08 59.9 7.6 71 546-623 20-96 (219)
387 KOG0285 Pleiotropic regulator 96.9 0.16 3.5E-06 50.0 18.8 180 32-317 153-338 (460)
388 KOG0646 WD40 repeat protein [G 96.8 0.056 1.2E-06 55.0 16.0 59 33-105 84-142 (476)
389 KOG0313 Microtubule binding pr 96.8 0.086 1.9E-06 52.3 16.8 263 2-316 122-406 (423)
390 KOG2110 Uncharacterized conser 96.8 0.022 4.7E-07 56.2 12.7 132 209-371 106-237 (391)
391 KOG0269 WD40 repeat-containing 96.8 0.024 5.2E-07 61.2 14.1 204 5-308 110-319 (839)
392 KOG1538 Uncharacterized conser 96.8 0.053 1.1E-06 57.6 16.0 135 157-345 33-172 (1081)
393 KOG1034 Transcriptional repres 96.8 0.023 4.9E-07 55.2 12.2 66 29-104 134-199 (385)
394 KOG1063 RNA polymerase II elon 96.8 0.0099 2.2E-07 63.2 10.7 67 30-106 525-592 (764)
395 KOG3967 Uncharacterized conser 96.7 0.012 2.7E-07 53.3 9.6 112 512-625 100-213 (297)
396 PF05577 Peptidase_S28: Serine 96.7 0.0069 1.5E-07 65.5 9.7 87 549-638 52-149 (434)
397 KOG2931 Differentiation-relate 96.7 0.099 2.2E-06 50.5 15.9 131 482-637 22-157 (326)
398 KOG0303 Actin-binding protein 96.7 0.56 1.2E-05 47.1 21.4 123 175-334 82-205 (472)
399 KOG0268 Sof1-like rRNA process 96.7 0.0085 1.8E-07 58.7 8.9 134 157-333 210-348 (433)
400 KOG1408 WD40 repeat protein [F 96.7 0.014 3E-07 62.2 11.1 117 175-333 597-714 (1080)
401 KOG0646 WD40 repeat protein [G 96.7 0.062 1.3E-06 54.7 15.1 142 157-333 103-248 (476)
402 COG3391 Uncharacterized conser 96.7 0.2 4.4E-06 52.9 20.2 207 32-334 75-285 (381)
403 KOG1551 Uncharacterized conser 96.7 0.02 4.4E-07 53.8 10.7 58 676-740 309-366 (371)
404 KOG4328 WD40 protein [Function 96.7 0.12 2.6E-06 52.5 16.8 261 175-521 187-474 (498)
405 PF15492 Nbas_N: Neuroblastoma 96.7 0.57 1.2E-05 45.2 20.4 58 35-104 2-61 (282)
406 KOG4328 WD40 protein [Function 96.6 1 2.2E-05 46.1 23.5 197 32-331 188-398 (498)
407 KOG2321 WD40 repeat protein [G 96.6 0.32 6.9E-06 51.1 19.7 41 300-346 230-270 (703)
408 KOG3975 Uncharacterized conser 96.5 0.14 2.9E-06 48.3 14.8 54 582-636 91-146 (301)
409 KOG1332 Vesicle coat complex C 96.5 0.37 8E-06 45.1 17.4 184 157-371 80-275 (299)
410 PF13360 PQQ_2: PQQ-like domai 96.4 0.7 1.5E-05 45.2 21.2 131 157-334 3-142 (238)
411 KOG0302 Ribosome Assembly prot 96.4 0.021 4.7E-07 56.3 9.7 138 59-283 231-377 (440)
412 KOG0294 WD40 repeat-containing 96.4 0.55 1.2E-05 45.7 18.4 215 4-334 62-285 (362)
413 PF05990 DUF900: Alpha/beta hy 96.4 0.014 3E-07 56.7 8.2 82 583-686 76-166 (233)
414 COG3319 Thioesterase domains o 96.3 0.0094 2E-07 58.0 6.9 74 556-637 27-103 (257)
415 PF08386 Abhydrolase_4: TAP-li 96.3 0.0091 2E-07 49.4 5.9 60 673-739 34-93 (103)
416 PF00450 Peptidase_S10: Serine 96.3 0.025 5.4E-07 61.0 10.6 149 485-638 16-182 (415)
417 KOG0321 WD40 repeat-containing 96.2 0.31 6.7E-06 51.9 16.9 60 32-105 102-163 (720)
418 COG3204 Uncharacterized protei 96.1 0.88 1.9E-05 44.3 18.6 60 88-195 87-149 (316)
419 PRK10252 entF enterobactin syn 96.0 0.1 2.2E-06 65.5 15.4 75 553-635 1092-1169(1296)
420 KOG1963 WD40 repeat protein [G 96.0 0.23 5E-06 54.8 15.5 73 157-255 227-306 (792)
421 KOG0641 WD40 repeat protein [G 95.9 1.4 3.1E-05 40.6 18.6 22 175-196 90-111 (350)
422 KOG4283 Transcription-coupled 95.9 0.63 1.4E-05 44.8 16.1 173 175-408 102-281 (397)
423 PF06977 SdiA-regulated: SdiA- 95.9 0.63 1.4E-05 45.3 16.8 57 33-102 24-80 (248)
424 PF06977 SdiA-regulated: SdiA- 95.8 0.68 1.5E-05 45.1 17.0 141 157-333 44-202 (248)
425 KOG0290 Conserved WD40 repeat- 95.8 2 4.3E-05 41.5 20.0 146 175-371 151-306 (364)
426 KOG0269 WD40 repeat-containing 95.8 0.26 5.6E-06 53.7 14.8 165 157-371 110-282 (839)
427 COG4782 Uncharacterized protei 95.8 0.049 1.1E-06 54.5 8.9 107 513-638 116-235 (377)
428 PF13360 PQQ_2: PQQ-like domai 95.8 1.9 4.1E-05 42.0 20.7 51 157-221 46-98 (238)
429 PRK13614 lipoprotein LpqB; Pro 95.8 0.86 1.9E-05 50.1 19.1 56 32-104 344-399 (573)
430 TIGR03300 assembly_YfgL outer 95.7 3.6 7.7E-05 43.6 29.1 55 396-466 290-344 (377)
431 KOG0292 Vesicle coat complex C 95.7 4.9 0.00011 45.1 24.0 218 157-412 115-357 (1202)
432 KOG4388 Hormone-sensitive lipa 95.6 0.016 3.5E-07 60.6 5.2 68 674-745 788-859 (880)
433 PF15492 Nbas_N: Neuroblastoma 95.6 2.4 5.3E-05 41.0 19.8 39 175-226 44-82 (282)
434 KOG0650 WD40 repeat nucleolar 95.6 0.24 5.3E-06 52.2 13.2 106 30-196 521-629 (733)
435 KOG2041 WD40 repeat protein [G 95.5 0.77 1.7E-05 49.7 16.6 61 32-105 73-134 (1189)
436 KOG2100 Dipeptidyl aminopeptid 95.4 5.9 0.00013 45.8 25.3 78 247-334 345-424 (755)
437 PF04053 Coatomer_WDAD: Coatom 95.4 0.38 8.2E-06 51.4 14.6 88 186-317 117-213 (443)
438 KOG1408 WD40 repeat protein [F 95.4 0.13 2.8E-06 55.3 10.7 72 359-463 603-674 (1080)
439 PF05057 DUF676: Putative seri 95.2 0.016 3.4E-07 55.8 3.3 22 601-622 77-98 (217)
440 COG3946 VirJ Type IV secretory 95.2 0.077 1.7E-06 53.6 7.9 78 540-625 272-349 (456)
441 PF07995 GSDH: Glucose / Sorbo 95.1 4.8 0.0001 41.6 25.3 84 244-332 116-214 (331)
442 PRK13615 lipoprotein LpqB; Pro 95.1 2.3 5E-05 46.7 19.5 158 33-283 336-501 (557)
443 KOG4389 Acetylcholinesterase/B 95.0 0.035 7.7E-07 57.2 5.0 125 495-638 121-256 (601)
444 KOG0308 Conserved WD40 repeat- 95.0 0.98 2.1E-05 48.4 15.5 141 157-333 95-244 (735)
445 KOG2565 Predicted hydrolases o 94.9 0.13 2.9E-06 51.3 8.7 117 491-630 132-257 (469)
446 KOG2521 Uncharacterized conser 94.9 0.67 1.5E-05 47.1 13.9 68 673-742 225-292 (350)
447 cd00741 Lipase Lipase. Lipase 94.8 0.096 2.1E-06 47.2 7.1 52 582-635 10-65 (153)
448 KOG1214 Nidogen and related ba 94.7 1.8 4E-05 47.8 17.0 165 158-373 1048-1216(1289)
449 KOG1036 Mitotic spindle checkp 94.7 4.8 0.0001 39.4 21.6 87 300-407 234-320 (323)
450 KOG2183 Prolylcarboxypeptidase 94.6 0.041 8.8E-07 55.6 4.4 55 580-634 145-199 (492)
451 PLN02209 serine carboxypeptida 94.6 0.33 7.1E-06 51.9 11.5 61 674-738 352-433 (437)
452 KOG2321 WD40 repeat protein [G 94.5 6.1 0.00013 42.1 19.7 183 157-410 74-265 (703)
453 PRK13613 lipoprotein LpqB; Pro 94.5 2.4 5.2E-05 47.2 18.3 57 32-104 364-425 (599)
454 KOG0285 Pleiotropic regulator 94.4 6.1 0.00013 39.5 20.4 214 5-334 173-391 (460)
455 KOG2111 Uncharacterized conser 94.4 2.2 4.7E-05 41.8 15.1 92 61-218 158-257 (346)
456 KOG2111 Uncharacterized conser 94.3 2.5 5.4E-05 41.5 15.3 97 209-333 159-257 (346)
457 PF11187 DUF2974: Protein of u 94.3 0.08 1.7E-06 50.8 5.6 49 588-636 70-122 (224)
458 PF11768 DUF3312: Protein of u 94.3 3.1 6.7E-05 44.6 17.3 141 157-334 184-331 (545)
459 TIGR02604 Piru_Ver_Nterm putat 94.2 3.6 7.8E-05 43.3 18.3 172 244-441 16-198 (367)
460 KOG3621 WD40 repeat-containing 94.2 2.3 4.9E-05 46.4 16.3 60 32-104 35-94 (726)
461 COG2319 FOG: WD40 repeat [Gene 94.1 7.9 0.00017 40.9 21.7 196 33-334 112-316 (466)
462 KOG0270 WD40 repeat-containing 94.1 5.6 0.00012 40.9 17.9 139 157-334 266-408 (463)
463 KOG0267 Microtubule severing p 94.0 0.13 2.7E-06 55.5 6.8 132 157-333 92-227 (825)
464 TIGR03606 non_repeat_PQQ dehyd 94.0 2.9 6.2E-05 44.6 16.7 57 32-98 31-90 (454)
465 COG3204 Uncharacterized protei 93.9 5.1 0.00011 39.2 16.6 59 32-103 87-145 (316)
466 TIGR02604 Piru_Ver_Nterm putat 93.9 0.86 1.9E-05 48.0 12.9 65 244-313 126-198 (367)
467 PLN03016 sinapoylglucose-malat 93.8 0.43 9.4E-06 50.9 10.5 62 674-739 348-430 (433)
468 COG1075 LipA Predicted acetylt 93.7 0.16 3.5E-06 52.4 7.0 36 601-636 126-163 (336)
469 PF01764 Lipase_3: Lipase (cla 93.7 0.17 3.6E-06 44.8 6.3 38 583-622 47-84 (140)
470 PF13449 Phytase-like: Esteras 93.7 9.6 0.00021 39.3 22.0 149 176-333 86-252 (326)
471 KOG0308 Conserved WD40 repeat- 93.7 1.7 3.8E-05 46.6 14.1 130 157-334 140-287 (735)
472 KOG1214 Nidogen and related ba 93.7 4 8.8E-05 45.3 17.1 172 152-371 994-1174(1289)
473 PF02450 LCAT: Lecithin:choles 93.4 0.17 3.7E-06 53.4 6.6 82 546-637 69-160 (389)
474 PF11288 DUF3089: Protein of u 93.4 0.21 4.5E-06 46.7 6.2 45 578-623 72-116 (207)
475 KOG0321 WD40 repeat-containing 93.3 4.4 9.5E-05 43.6 16.3 49 157-217 122-175 (720)
476 PF06259 Abhydrolase_8: Alpha/ 93.2 2.1 4.5E-05 39.2 12.4 56 578-634 86-141 (177)
477 PRK13614 lipoprotein LpqB; Pro 93.2 3.5 7.5E-05 45.5 16.2 149 157-333 365-519 (573)
478 TIGR03300 assembly_YfgL outer 93.1 14 0.0003 39.1 25.0 51 396-465 252-302 (377)
479 PRK13615 lipoprotein LpqB; Pro 92.7 9.2 0.0002 42.1 18.4 142 158-334 356-504 (557)
480 PF07995 GSDH: Glucose / Sorbo 92.6 5.6 0.00012 41.1 16.3 186 244-458 4-212 (331)
481 KOG0299 U3 snoRNP-associated p 92.6 8.9 0.00019 39.7 16.7 120 169-317 136-263 (479)
482 KOG0292 Vesicle coat complex C 92.5 23 0.00049 40.2 25.4 118 32-225 11-131 (1202)
483 KOG1912 WD40 repeat protein [G 92.3 8.5 0.00018 42.7 17.0 59 24-98 9-67 (1062)
484 PF05694 SBP56: 56kDa selenium 92.2 0.99 2.1E-05 46.8 9.7 172 176-371 182-392 (461)
485 KOG1520 Predicted alkaloid syn 92.0 5.3 0.00011 40.8 14.4 220 35-328 119-362 (376)
486 KOG2182 Hydrolytic enzymes of 92.0 2.2 4.7E-05 44.9 12.0 130 491-636 67-206 (514)
487 KOG0276 Vesicle coat complex C 92.0 21 0.00045 38.7 24.7 364 3-485 33-432 (794)
488 TIGR03712 acc_sec_asp2 accesso 92.0 11 0.00023 40.0 16.8 52 586-639 341-392 (511)
489 KOG1282 Serine carboxypeptidas 91.9 1.2 2.7E-05 47.2 10.5 151 483-638 47-214 (454)
490 PF03088 Str_synth: Strictosid 91.7 1.1 2.4E-05 35.6 7.5 81 246-333 2-88 (89)
491 KOG1587 Cytoplasmic dynein int 91.7 24 0.00053 38.9 22.6 103 243-371 400-505 (555)
492 KOG3914 WD repeat protein WDR4 91.6 3.1 6.7E-05 42.1 12.2 41 289-333 142-182 (390)
493 KOG0274 Cdc4 and related F-box 91.5 26 0.00056 38.8 23.3 141 209-413 311-451 (537)
494 TIGR03606 non_repeat_PQQ dehyd 91.3 18 0.00039 38.7 18.4 111 244-373 32-165 (454)
495 cd00519 Lipase_3 Lipase (class 90.9 0.59 1.3E-05 45.5 6.6 52 582-635 110-166 (229)
496 KOG2041 WD40 repeat protein [G 90.8 2.5 5.5E-05 46.0 11.2 55 33-104 118-174 (1189)
497 KOG4532 WD40-like repeat conta 90.8 12 0.00026 36.0 14.3 187 5-275 138-335 (344)
498 PF13449 Phytase-like: Esteras 90.7 19 0.00041 37.1 17.7 45 62-106 112-166 (326)
499 KOG0281 Beta-TrCP (transducin 90.4 4.8 0.0001 39.9 11.9 127 157-334 297-430 (499)
500 PF03088 Str_synth: Strictosid 90.4 1.9 4.2E-05 34.2 7.7 42 155-196 35-78 (89)
No 1
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-42 Score=385.23 Aligned_cols=587 Identities=20% Similarity=0.225 Sum_probs=384.1
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (752)
.+..|+.+|+|+.++|+.+.- +.....+...+|+.+... .+.++... ....+.|||||+.++|.... +.
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~d~~~--~~~~~~~~------~~~~~~~spdg~~~~~~~~~--~~ 82 (620)
T COG1506 14 RVSDPRVSPPGGRLAYILTGL-DFLKPLYKSSLWVSDGKT--VRLLTFGG------GVSELRWSPDGSVLAFVSTD--GG 82 (620)
T ss_pred cccCcccCCCCceeEEeeccc-cccccccccceEEEeccc--ccccccCC------cccccccCCCCCEEEEEecc--CC
Confidence 577799999999999987731 122235668899977554 44444333 35677999999999998521 11
Q ss_pred CCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCCCccccCCc-cceeccccCCCCceEE
Q 004456 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSPDQKYVL 190 (752)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G~~~~l~~~-~~~~~~~~SpDGk~l~ 190 (752)
...++|+++.+| .+... ..+....|+|+|+.++
T Consensus 83 -------------------------------------------~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~~ 116 (620)
T COG1506 83 -------------------------------------------RVAQLYLVDVGG---LITKTAFGVSDARWSPDGDRIA 116 (620)
T ss_pred -------------------------------------------CcceEEEEecCC---ceeeeecccccceeCCCCCeEE
Confidence 116899998875 33333 6788999999999999
Q ss_pred EEecccCccccccccCccccEEEE-ecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCc
Q 004456 191 ITSMHRPYSYKVPCARFSQKVQVW-TTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (752)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~-d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~ 269 (752)
+...............+..++.+| +..+++...+....... ...........+..+.++++++. ++.........+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~- 193 (620)
T COG1506 117 FLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIES-KLIKLGLGNLDVVSFATDGDGRL-VASIRLDDDADP- 193 (620)
T ss_pred EEecccccccCCceeeeecccceeecCCCCcccceEEEccCc-ccccccCCCCceeeeeeCCCCce-eEEeeeccccCC-
Confidence 943222100000000111222222 22221222111111110 00011111122445556666664 444432221111
Q ss_pred cccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeeccc----CceeEEEEcCCCCCcccee-cccc
Q 004456 270 VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT----SQTRTWLVCPGSKDVAPRV-LFDR 344 (752)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~----~~~~l~~~~~~~~~~~~~~-l~~~ 344 (752)
.....++... ..+....++.....+..+.|.+||+.+++...... ....+++++...+ +... +...
T Consensus 194 ----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~ 264 (620)
T COG1506 194 ----WVTNLYVLIE---GNGELESLTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELG--EVDGDLSSG 264 (620)
T ss_pred ----ceEeeEEEec---CCCceEEEcCCCceeeeeeeCCCCCeeEEeccCCccCccccceEEEEecccc--ccceeeccC
Confidence 1112222222 34567777777788899999999998888764322 2234555552222 1111 1111
Q ss_pred ccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeeccchhhhhceee
Q 004456 345 VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVA 424 (752)
Q Consensus 345 ~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~ 424 (752)
. ... +.....+.-++..++|...+. .....++.++..++.. .+...+.
T Consensus 265 ~--~~~---~~~~~~~~~~~~~~~~~~~~~-----------------~g~~~l~~~~~~~~~~-~~~~~~~--------- 312 (620)
T COG1506 265 D--DTR---GAWAVEGGLDGDGLLFIATDG-----------------GGSSPLFRVDDLGGGV-EGLSGDD--------- 312 (620)
T ss_pred C--ccc---CcHHhccccCCCcEEEEEecC-----------------CCceEEEEEeccCCce-eeecCCC---------
Confidence 0 000 111111234555565555321 1111233343323332 2222221
Q ss_pred eecCCcceecccCCCEEEEEEecCCCCcEEEEEECCCCCeeEeecCCCC-CCCcCCCceEEEEEEcCCCcEEEEEEEeCC
Q 004456 425 LVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHP-YPTLASLQKEMIKYQRKDGVPLTATLYLPP 503 (752)
Q Consensus 425 ~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~l~~P~ 503 (752)
.....|+.+++.+++..++...|+++|.++. ++..+++..+.. .......++|.+++++.||..+++++++|.
T Consensus 313 ----~~v~~f~~~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~dG~~i~~~l~~P~ 386 (620)
T COG1506 313 ----GGVPGFDVDGRKLALAYSSPTEPPEIYLYDR--GEEAKLTSSNNSGLKKVKLAEPEPVTYKSNDGETIHGWLYKPP 386 (620)
T ss_pred ----ceEEEEeeCCCEEEEEecCCCCccceEEEcC--CCceEEeecccccccccccCCceEEEEEcCCCCEEEEEEecCC
Confidence 1123456699999999999999999999987 555556655444 345667899999999999999999999999
Q ss_pred CCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCCc---hhHH
Q 004456 504 GYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVE 580 (752)
Q Consensus 504 ~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~ 580 (752)
++++.++ +|+||++||||... +...+....+.|+++||+|+.++++++.|+|+.+... .+..
T Consensus 387 ~~~~~k~--yP~i~~~hGGP~~~-------------~~~~~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~~~~g~ 451 (620)
T COG1506 387 GFDPRKK--YPLIVYIHGGPSAQ-------------VGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWGG 451 (620)
T ss_pred CCCCCCC--CCEEEEeCCCCccc-------------cccccchhhHHHhcCCeEEEEeCCCCCCccHHHHHHhhhhccCC
Confidence 9877654 99999999997432 1112335678899999999999999999999875543 3445
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCccc--------cccc
Q 004456 581 QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQT--------EFRT 652 (752)
Q Consensus 581 ~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~--------~~~~ 652 (752)
..++|+.++++++.+.+.+|++||+|+|+|+||+|+++++.+.| .|+++++..+..++......... ....
T Consensus 452 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (620)
T COG1506 452 VDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGESTEGLRFDPEENGGG 530 (620)
T ss_pred ccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhccccchhhcCCHHHhCCC
Confidence 67899999999999999999999999999999999999999997 89999988887664433222111 1111
Q ss_pred hhhhHHHHHhcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHH
Q 004456 653 LWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWE 732 (752)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~ 732 (752)
++.+.+.|...+|+.++.++++|+|||||+.|.+|| .+|+.+++++|+..|+++++++||+++|.+...++....+..
T Consensus 531 ~~~~~~~~~~~sp~~~~~~i~~P~LliHG~~D~~v~--~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~~~~~~~~~~~ 608 (620)
T COG1506 531 PPEDREKYEDRSPIFYADNIKTPLLLIHGEEDDRVP--IEQAEQLVDALKRKGKPVELVVFPDEGHGFSRPENRVKVLKE 608 (620)
T ss_pred cccChHHHHhcChhhhhcccCCCEEEEeecCCccCC--hHHHHHHHHHHHHcCceEEEEEeCCCCcCCCCchhHHHHHHH
Confidence 111567899999999999999999999999999999 999999999999999999999999999999988888899999
Q ss_pred HHHHHHHHhcC
Q 004456 733 TDRWLQKYCLS 743 (752)
Q Consensus 733 ~~~fl~~~l~~ 743 (752)
+++||+++++.
T Consensus 609 ~~~~~~~~~~~ 619 (620)
T COG1506 609 ILDWFKRHLKQ 619 (620)
T ss_pred HHHHHHHHhcC
Confidence 99999999975
No 2
>PRK10115 protease 2; Provisional
Probab=100.00 E-value=9.1e-39 Score=355.38 Aligned_cols=526 Identities=13% Similarity=0.050 Sum_probs=352.1
Q ss_pred ccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCC
Q 004456 89 FGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT 167 (752)
Q Consensus 89 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~ 167 (752)
+..+.|||||++|+|+...... ...+|+++++ +|+
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~--------------------------------------------E~~~l~v~d~~tg~ 164 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSR--------------------------------------------RQYGIRFRNLETGN 164 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCc--------------------------------------------EEEEEEEEECCCCC
Confidence 4578999999999998543222 2268999999 665
Q ss_pred --ccccCCccceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCc--eeEEecCCCCCCCCCcccCCcccc
Q 004456 168 --AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK--LVRELCDLPPAEDIPVCYNSVREG 243 (752)
Q Consensus 168 --~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~~~~~~ 243 (752)
...+. ... ..++|++||+.|+|+..+.. ...+.++|++++.+. +.+.+...... +
T Consensus 165 ~l~~~i~-~~~-~~~~w~~D~~~~~y~~~~~~-------~~~~~~v~~h~lgt~~~~d~lv~~e~~~---~--------- 223 (686)
T PRK10115 165 WYPELLD-NVE-PSFVWANDSWTFYYVRKHPV-------TLLPYQVWRHTIGTPASQDELVYEEKDD---T--------- 223 (686)
T ss_pred CCCcccc-Ccc-eEEEEeeCCCEEEEEEecCC-------CCCCCEEEEEECCCChhHCeEEEeeCCC---C---------
Confidence 22232 122 45999999999999987521 112368999999887 44445442211 0
Q ss_pred ccceee-eeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccc-eeeeeeecCCceEEEeeeccc
Q 004456 244 MRSISW-RADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR-FRSVSWCDDSLALVNETWYKT 321 (752)
Q Consensus 244 ~~~~~w-spDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~spDg~~l~~~~~~~~ 321 (752)
..-..| +.|+++ ++... .++ ....+++++++. ..+..+.+...... ...+ ...+..+++.++.+.
T Consensus 224 ~~~~~~~s~d~~~-l~i~~-~~~--------~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~ly~~tn~~~ 290 (686)
T PRK10115 224 FYVSLHKTTSKHY-VVIHL-ASA--------TTSEVLLLDAEL-ADAEPFVFLPRRKDHEYSL--DHYQHRFYLRSNRHG 290 (686)
T ss_pred EEEEEEEcCCCCE-EEEEE-ECC--------ccccEEEEECcC-CCCCceEEEECCCCCEEEE--EeCCCEEEEEEcCCC
Confidence 111234 448887 54332 211 222456655411 22334444333222 2222 233466777776655
Q ss_pred CceeEEEEcCCCCCccceeccccccc-cccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEE
Q 004456 322 SQTRTWLVCPGSKDVAPRVLFDRVFE-NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLF 400 (752)
Q Consensus 322 ~~~~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~ 400 (752)
.+..|..+++.+. ...+.+...... ... .+.++ +++|++.... .....|+++
T Consensus 291 ~~~~l~~~~~~~~-~~~~~l~~~~~~~~i~------~~~~~--~~~l~~~~~~------------------~g~~~l~~~ 343 (686)
T PRK10115 291 KNFGLYRTRVRDE-QQWEELIPPRENIMLE------GFTLF--TDWLVVEERQ------------------RGLTSLRQI 343 (686)
T ss_pred CCceEEEecCCCc-ccCeEEECCCCCCEEE------EEEEE--CCEEEEEEEe------------------CCEEEEEEE
Confidence 6678999888742 233334333111 100 13343 4566666532 234468899
Q ss_pred ecCCCceeEEeeccchhhhhceeeeecCCcceecccCCCEEEEEEecCCCCcEEEEEECCCCCeeEeecCCCCCCCcCCC
Q 004456 401 DINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480 (752)
Q Consensus 401 d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~ 480 (752)
|+.+++.+.|...... ..... ..+.+++++.+++..++...|+++|.+|+.+++.++|+..+.+..+...+
T Consensus 344 ~~~~~~~~~l~~~~~~-----~~~~~----~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~~~~~~~~~~~~ 414 (686)
T PRK10115 344 NRKTREVIGIAFDDPA-----YVTWI----AYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVPGFDAANY 414 (686)
T ss_pred cCCCCceEEecCCCCc-----eEeee----cccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEEecCCCCcCcccc
Confidence 8876666666421111 11110 01233678889999999999999999999999888888765443333467
Q ss_pred ceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEe
Q 004456 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (752)
Q Consensus 481 ~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~ 560 (752)
.+|.+++++.||.+|++++++++.... .++.|+||++|||+.... ...+....+.|+++||+|+.
T Consensus 415 ~~e~v~~~s~DG~~Ip~~l~~~~~~~~--~~~~P~ll~~hGg~~~~~-------------~p~f~~~~~~l~~rG~~v~~ 479 (686)
T PRK10115 415 RSEHLWITARDGVEVPVSLVYHRKHFR--KGHNPLLVYGYGSYGASI-------------DADFSFSRLSLLDRGFVYAI 479 (686)
T ss_pred EEEEEEEECCCCCEEEEEEEEECCCCC--CCCCCEEEEEECCCCCCC-------------CCCccHHHHHHHHCCcEEEE
Confidence 999999999999999997776554322 234799999999864321 11122345688999999999
Q ss_pred cCCCCCCCCCCCCCCchh---HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCC
Q 004456 561 GPSIPIIGEGDKLPNDRF---VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (752)
Q Consensus 561 ~~~~~~~g~g~~~~~~~~---~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~ 637 (752)
++.+++.|+|+.+..... ....++|+.+++++|.+++++|++|++++|.|+||+++.+++.++|++|+|+|+.+|+.
T Consensus 480 ~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~ 559 (686)
T PRK10115 480 VHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFV 559 (686)
T ss_pred EEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCch
Confidence 999999999986443211 12568999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC------ccC--ccccccchhhh--HHHHHhcChhhhcCCCCCC-EEEEEeCCCCCCCCCHHHHHHHHHHHHhCCC
Q 004456 638 NKTLT------PFG--FQTEFRTLWEA--TNVYIEMSPITHANKIKKP-ILIIHGEVDDKVGLFPMQAERFFDALKGHGA 706 (752)
Q Consensus 638 ~~~~~------~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~P-~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~ 706 (752)
|+... +.. ...+.+.+++. .+.+..+||+.++.+++.| +||+||.+|.+|| +.++.+++++|++.+.
T Consensus 560 D~~~~~~~~~~p~~~~~~~e~G~p~~~~~~~~l~~~SP~~~v~~~~~P~lLi~~g~~D~RV~--~~~~~k~~a~Lr~~~~ 637 (686)
T PRK10115 560 DVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQ--YWEPAKWVAKLRELKT 637 (686)
T ss_pred hHhhhcccCCCCCChhHHHHhCCCCCHHHHHHHHHcCchhccCccCCCceeEEecCCCCCcC--chHHHHHHHHHHhcCC
Confidence 85422 111 12233445432 3445679999999999989 6778999999999 9999999999999999
Q ss_pred cEEEEEe---CCCCccCCc-cccHHHHHHHHHHHHHHHhcCCC
Q 004456 707 LSRLVLL---PFEHHVYAA-RENVMHVIWETDRWLQKYCLSNT 745 (752)
Q Consensus 707 ~~~~~~~---~~~~H~~~~-~~~~~~~~~~~~~fl~~~l~~~~ 745 (752)
+++++++ +++||+... ............+||...++...
T Consensus 638 ~~~~vl~~~~~~~GHg~~~~r~~~~~~~A~~~aFl~~~~~~~~ 680 (686)
T PRK10115 638 DDHLLLLCTDMDSGHGGKSGRFKSYEGVAMEYAFLIALAQGTL 680 (686)
T ss_pred CCceEEEEecCCCCCCCCcCHHHHHHHHHHHHHHHHHHhCCcC
Confidence 8888888 999998421 12223445567999999987754
No 3
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=4e-28 Score=270.30 Aligned_cols=392 Identities=23% Similarity=0.251 Sum_probs=271.0
Q ss_pred eeeecCCceEEEee-ecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEE
Q 004456 304 VSWCDDSLALVNET-WYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYIL 382 (752)
Q Consensus 304 ~~~spDg~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~ 382 (752)
+.++.|+....+.. ..+....++..+....+ ..++.++.+...-. ..+.|+.+.++++|.+...
T Consensus 345 ~~~~~d~~~~~~~~~~~~~~~~hi~~~~~~~~-~~~~~lt~g~w~v~------~i~~~~~~~~~i~f~~~~~-------- 409 (755)
T KOG2100|consen 345 PVFSSDGSSYLKVDSVSDGGYNHIAYLKLSNG-SEPRMLTSGNWEVT------SILGYDKDSNRIYFDAYEE-------- 409 (755)
T ss_pred ceEeecCCceeEEEeeccCCEEEEEEEEcCCC-CccccccccceEEE------EeccccCCCceEEEEecCC--------
Confidence 55777775554443 22222567777777664 24455555443221 1123567888888887431
Q ss_pred EccCCCCCCCCCCeeEEEecCCCceeEEeeccchhhhhceeeeecCCcceecccCCCEEEEEEecCCCCcE-EEEEECCC
Q 004456 383 LNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQ-YHILSWPL 461 (752)
Q Consensus 383 ~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~-i~~~d~~~ 461 (752)
.....+|+.+++.++..+.++..... ....+ ...+++...+.++.....+..|.. +-+.....
T Consensus 410 --------~~~~~~ly~i~~~~~~~~~lt~~~~~----~~~~~----~~~~~~~~~~~~v~~~~gP~~p~~~~~~~~~~~ 473 (755)
T KOG2100|consen 410 --------DPSERHLYSISLGSGTVESLTCSLIT----GPCTY----LSVSFSKSAKYYVLSCSGPKVPDGQLTRHSSKN 473 (755)
T ss_pred --------CCCceEEEEEEccccccccccccCCC----CcceE----EEEecCCcccEEEEEccCCCCCcceeecccccc
Confidence 24567899999998887776654432 00111 123667777888888777776632 11111111
Q ss_pred CC-eeEeecCCCCC----C--CcCCCceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCccc
Q 004456 462 KK-SSQITNFPHPY----P--TLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR 534 (752)
Q Consensus 462 g~-~~~lt~~~~~~----~--~~~~~~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~ 534 (752)
.. ...|. .+... . .++....+.+.+ +|....+.+.+|+++.+.+ ++|+|+.+||||... +.+
T Consensus 474 ~~~~~~Le-~n~~~~~~~~~~~~p~~~~~~i~~---~~~~~~~~~~lP~~~~~~~--kyPllv~~yGGP~sq-----~v~ 542 (755)
T KOG2100|consen 474 SKTIVVLE-TNEELKKTIENVALPIVEFGKIEI---DGITANAILILPPNFDPSK--KYPLLVVVYGGPGSQ-----SVT 542 (755)
T ss_pred ceEEEEec-cChhhHHHhhcccCCcceeEEEEe---ccEEEEEEEecCCCCCCCC--CCCEEEEecCCCCcc-----eee
Confidence 11 12221 11111 1 122233444444 7889999999999988766 599999999997421 111
Q ss_pred CCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCC---CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCh
Q 004456 535 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSY 611 (752)
Q Consensus 535 ~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~---~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~ 611 (752)
. .+. . .+....+..+|++|+.++.++..|+|.... ....+...++|...+++++.+.+++|.+||+|+|+|+
T Consensus 543 ~---~~~-~-~~~~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSy 617 (755)
T KOG2100|consen 543 S---KFS-V-DWNEVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSY 617 (755)
T ss_pred e---eEE-e-cHHHHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccCh
Confidence 1 111 1 122334568999999999998888887643 3345556799999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC-CceeEEEEccCCCCCCCCccCccccc-cchhhhHHHHHhcChhhhcCCCCCCE-EEEEeCCCCCCC
Q 004456 612 GAFMTAHLLAHAP-HLFCCGIARSGSYNKTLTPFGFQTEF-RTLWEATNVYIEMSPITHANKIKKPI-LIIHGEVDDKVG 688 (752)
Q Consensus 612 GG~~a~~~~~~~p-~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~P~-li~~G~~D~~v~ 688 (752)
||+++++++...| ..|+|+++++|++++.+..-.+.... ..+......|.+.++..++..++.|. |++||+.|..|+
T Consensus 618 GGy~t~~~l~~~~~~~fkcgvavaPVtd~~~yds~~terymg~p~~~~~~y~e~~~~~~~~~~~~~~~LliHGt~DdnVh 697 (755)
T KOG2100|consen 618 GGYLTLKLLESDPGDVFKCGVAVAPVTDWLYYDSTYTERYMGLPSENDKGYEESSVSSPANNIKTPKLLLIHGTEDDNVH 697 (755)
T ss_pred HHHHHHHHhhhCcCceEEEEEEecceeeeeeecccccHhhcCCCccccchhhhccccchhhhhccCCEEEEEcCCcCCcC
Confidence 9999999999998 67899999999999874332222222 33444444588888888888888776 999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHHHHhcCC
Q 004456 689 LFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLSN 744 (752)
Q Consensus 689 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~~ 744 (752)
++++.+++++|+.+|+++++.+||+.+|++.........+..+..||..+++.+
T Consensus 698 --~q~s~~~~~aL~~~gv~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~~~~~~ 751 (755)
T KOG2100|consen 698 --FQQSAILIKALQNAGVPFRLLVYPDENHGISYVEVISHLYEKLDRFLRDCFGSP 751 (755)
T ss_pred --HHHHHHHHHHHHHCCCceEEEEeCCCCcccccccchHHHHHHHHHHHHHHcCcc
Confidence 999999999999999999999999999999987877899999999999776543
No 4
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.2e-29 Score=254.53 Aligned_cols=323 Identities=19% Similarity=0.236 Sum_probs=238.1
Q ss_pred CCCCeeEEEecC-CCceeEEeeccchhhhhceeeeecCCcceecccCCCEEEEEEecCCCCcEEEEEECCCCCeeEeecC
Q 004456 392 GNIPFLDLFDIN-TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNF 470 (752)
Q Consensus 392 ~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~~g~~~~lt~~ 470 (752)
....+||+.... .|+..+|+...-. + .+.++-+=+.++...++...|+.+..+.+..++--.+-..
T Consensus 527 PlE~hLyvvsye~~g~~~rlt~~g~s-------h------~~~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~~~~l~~q 593 (867)
T KOG2281|consen 527 PLEHHLYVVSYENPGEIARLTEPGYS-------H------SCELDQQCDHFVSYYSSVGSPPCVSLYSLSWPENDPLPKQ 593 (867)
T ss_pred CceeeEEEEEEecCCceeeccCCCcc-------c------chhhhhhhhhHhhhhhcCCCCceEEEEeccCCccCcccch
Confidence 456689999988 7999888764311 1 1123333344555556666777766666554332211111
Q ss_pred C-------CCCCCcCCC-ceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCC
Q 004456 471 P-------HPYPTLASL-QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSG 542 (752)
Q Consensus 471 ~-------~~~~~~~~~-~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~ 542 (752)
. ...+..++. ..|-+.|.+..|..+.|.+|+|.+++++++ +|+|++++|||.- |+.. +.|.+
T Consensus 594 ~~~~~~l~~~~~~~Pdy~p~eif~fqs~tg~~lYgmiyKPhn~~pgkk--Yptvl~VYGGP~V------QlVn--nsfkg 663 (867)
T KOG2281|consen 594 VSFWAILVSGAPPPPDYVPPEIFSFQSKTGLTLYGMIYKPHNFQPGKK--YPTVLNVYGGPGV------QLVN--NSFKG 663 (867)
T ss_pred hhHHHHHHhcCCCCCccCChhheeeecCCCcEEEEEEEccccCCCCCC--CceEEEEcCCCce------EEee--ccccc
Confidence 0 111222333 447788888889999999999999999875 9999999999753 2322 45555
Q ss_pred CCchhHHHHHhCCcEEEecCCCCCCCCCCCCCC---chhHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEeChHHHHHHH
Q 004456 543 MTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRG-VADPSRIAVGGHSYGAFMTAH 618 (752)
Q Consensus 543 ~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~d~~~~~~~l~~~~-~~d~~~i~l~G~S~GG~~a~~ 618 (752)
.-..-...|+++||+|+.+|.++..-+|.++.. ..++.-.++|..+++++|.++. ++|.+||+|.|+|+||+++++
T Consensus 664 i~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSlm 743 (867)
T KOG2281|consen 664 IQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLM 743 (867)
T ss_pred eehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHHH
Confidence 444456688999999999776665555544322 2344456899999999999985 899999999999999999999
Q ss_pred HHHhCCCceeEEEEccCCCCCCCCccCccccccc-hhhhHHHHHhcChhhhcCCC---CCCEEEEEeCCCCCCCCCHHHH
Q 004456 619 LLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRT-LWEATNVYIEMSPITHANKI---KKPILIIHGEVDDKVGLFPMQA 694 (752)
Q Consensus 619 ~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~P~li~~G~~D~~v~~~~~~~ 694 (752)
+++++|+.|+++|+.+|++++.+...++...... +.++...|..-|.+.++.++ ...+|++||--|..|. ..+.
T Consensus 744 ~L~~~P~IfrvAIAGapVT~W~~YDTgYTERYMg~P~~nE~gY~agSV~~~VeklpdepnRLlLvHGliDENVH--F~Ht 821 (867)
T KOG2281|consen 744 GLAQYPNIFRVAIAGAPVTDWRLYDTGYTERYMGYPDNNEHGYGAGSVAGHVEKLPDEPNRLLLVHGLIDENVH--FAHT 821 (867)
T ss_pred HhhcCcceeeEEeccCcceeeeeecccchhhhcCCCccchhcccchhHHHHHhhCCCCCceEEEEecccccchh--hhhH
Confidence 9999999999999999999987766554433322 23455556665666666555 3459999999999998 9999
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHHH
Q 004456 695 ERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 739 (752)
Q Consensus 695 ~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 739 (752)
..+..+|.++|++.++++||+.-|++...++...+-..++.||.+
T Consensus 822 s~Lvs~lvkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 822 SRLVSALVKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred HHHHHHHHhCCCceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 999999999999999999999999999888888888889999976
No 5
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=99.97 E-value=5.6e-26 Score=234.14 Aligned_cols=504 Identities=15% Similarity=0.088 Sum_probs=322.9
Q ss_pred cEEEEEcc-CCCccccCCccceeccccCCCCceEEEEecccCccccccccCccccEEEEecCC--ceeEEecCCCCCCCC
Q 004456 157 AQLVLGSL-DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG--KLVRELCDLPPAEDI 233 (752)
Q Consensus 157 ~~i~~~~~-~G~~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~--~~~~~l~~~~~~~~~ 233 (752)
..|...|+ +|+...-.-..-..+++|.+||+.++|++.+.. .-+.+++...+.+ .+-+.+...+.....
T Consensus 155 y~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d~~~lfYt~~d~~--------~rp~kv~~h~~gt~~~~d~lvyeE~d~~f~ 226 (682)
T COG1770 155 YTLRFKDLATGEELPDEITNTSGSFAWAADGKTLFYTRLDEN--------HRPDKVWRHRLGTPGSSDELVYEEKDDRFF 226 (682)
T ss_pred EEEEEEecccccccchhhcccccceEEecCCCeEEEEEEcCC--------CCcceEEEEecCCCCCcceEEEEcCCCcEE
Confidence 56777888 774322221134568999999999999987742 1245777777776 444444433322000
Q ss_pred CcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceE
Q 004456 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLAL 313 (752)
Q Consensus 234 ~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l 313 (752)
..+.=|.+.++ |+... .+ .....+++++++. .+.+++.+......+. ...-.-|..+
T Consensus 227 -----------~~v~~s~s~~y-i~i~~-~~--------~~tsE~~ll~a~~-p~~~p~vv~pr~~g~e-Y~~eh~~d~f 283 (682)
T COG1770 227 -----------LSVGRSRSEAY-IVISL-GS--------HITSEVRLLDADD-PEAEPKVVLPRENGVE-YSVEHGGDRF 283 (682)
T ss_pred -----------EEeeeccCCce-EEEEc-CC--------CcceeEEEEecCC-CCCceEEEEEcCCCcE-EeeeecCcEE
Confidence 01122333443 33332 11 1333678888742 3445565544332211 1112337778
Q ss_pred EEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCC
Q 004456 314 VNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGN 393 (752)
Q Consensus 314 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 393 (752)
++.+|..+.+-+|+...+.-.....+.+..+...... -.++--.++|++... ...
T Consensus 284 ~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l-------~~~~~f~~~lVl~eR------------------~~g 338 (682)
T COG1770 284 YILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRL-------EGVDLFADHLVLLER------------------QEG 338 (682)
T ss_pred EEEecCCCcceEEEEccCCCChhcCeeeeccCCCcee-------eeeeeeccEEEEEec------------------ccC
Confidence 8888777666778887771110111222222221110 112334455555542 244
Q ss_pred CCeeEEEecCCCceeEEeeccchhhhhceeeeecCCcceecccCCCEEEEEEecCCCCcEEEEEECCCCCeeEeecCCCC
Q 004456 394 IPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHP 473 (752)
Q Consensus 394 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~ 473 (752)
.++|++++.++|+...|..++.. + ...+ ..+-.++...|.|.+++.+.|.+++.+|+.+++.+.|.....+
T Consensus 339 lp~v~v~~~~~~~~~~i~f~~~a-y---~~~l-----~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~LkqqeV~ 409 (682)
T COG1770 339 LPRVVVRDRKTGEERGIAFDDEA-Y---SAGL-----SGNPEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQEVP 409 (682)
T ss_pred CceEEEEecCCCceeeEEecchh-h---hccc-----cCCCCCCCccEEEEeecccccceeEEeeccCCcEEEEEeccCC
Confidence 66899999999998888666543 1 1111 2345678899999999999999999999999999999887666
Q ss_pred C-CCcCCCceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHH
Q 004456 474 Y-PTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL 552 (752)
Q Consensus 474 ~-~~~~~~~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 552 (752)
. .+.....+++++....||..|+..|++-++.+. .++.||+++.+|....... ..|+ .....|+
T Consensus 410 ~g~dp~~Y~s~riwa~a~dgv~VPVSLvyrkd~~~--~g~~p~lLygYGaYG~s~~---------p~Fs----~~~lSLl 474 (682)
T COG1770 410 GGFDPEDYVSRRIWATADDGVQVPVSLVYRKDTKL--DGSAPLLLYGYGAYGISMD---------PSFS----IARLSLL 474 (682)
T ss_pred CCCChhHeEEEEEEEEcCCCcEeeEEEEEecccCC--CCCCcEEEEEeccccccCC---------cCcc----cceeeee
Confidence 4 566778999999999999999999998876432 4568999999997644321 1222 2345778
Q ss_pred hCCcEEEecCCCCCCCCCCCCCCc-hhH--HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeE
Q 004456 553 ARRFAVLAGPSIPIIGEGDKLPND-RFV--EQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 629 (752)
Q Consensus 553 ~~G~~v~~~~~~~~~g~g~~~~~~-~~~--~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~ 629 (752)
.+||+-....-+++...|+..... ... .....|++++.++|.++++.++++|+++|.|+||+++..++.+.|+.|++
T Consensus 475 DRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~ 554 (682)
T COG1770 475 DRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAG 554 (682)
T ss_pred cCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhhhhh
Confidence 999776552323332223321111 011 13579999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCc------cCc--cccccchh--hhHHHHHhcChhhhcCCCC-CCEEEEEeCCCCCCCCCHHHHHHHH
Q 004456 630 GIARSGSYNKTLTP------FGF--QTEFRTLW--EATNVYIEMSPITHANKIK-KPILIIHGEVDDKVGLFPMQAERFF 698 (752)
Q Consensus 630 ~v~~~~~~~~~~~~------~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~P~li~~G~~D~~v~~~~~~~~~~~ 698 (752)
+|+..|+.|...+. +.. ..+.+.|. +..+.+..++|..++..-. +|+|+..|..|+.|. +.+..++.
T Consensus 555 iiA~VPFVDvltTMlD~slPLT~~E~~EWGNP~d~e~y~yikSYSPYdNV~a~~YP~ilv~~Gl~D~rV~--YwEpAKWv 632 (682)
T COG1770 555 IIAQVPFVDVLTTMLDPSLPLTVTEWDEWGNPLDPEYYDYIKSYSPYDNVEAQPYPAILVTTGLNDPRVQ--YWEPAKWV 632 (682)
T ss_pred eeecCCccchhhhhcCCCCCCCccchhhhCCcCCHHHHHHHhhcCchhccccCCCCceEEEccccCCccc--cchHHHHH
Confidence 99999998743221 110 11222222 2223456779988876543 789999999999999 99999999
Q ss_pred HHHHhCCC---cEEEEEeCCCCccC-CccccHHHHHHHHHHHHHHHhc
Q 004456 699 DALKGHGA---LSRLVLLPFEHHVY-AARENVMHVIWETDRWLQKYCL 742 (752)
Q Consensus 699 ~~l~~~~~---~~~~~~~~~~~H~~-~~~~~~~~~~~~~~~fl~~~l~ 742 (752)
++|+..+. ++-+..--++||+. ++.....+....-.+|+.+.++
T Consensus 633 AkLR~~~td~~plLlkt~M~aGHgG~SgRf~~lee~A~eYaF~l~~~~ 680 (682)
T COG1770 633 AKLRELKTDGNPLLLKTNMDAGHGGASGRFQRLEEIAFEYAFLLKLAG 680 (682)
T ss_pred HHHhhcccCCCcEEEEecccccCCCCCCchHHHHHHHHHHHHHhhhcc
Confidence 99998754 34555545789974 3333334444556778877664
No 6
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.94 E-value=3.4e-26 Score=221.62 Aligned_cols=196 Identities=28% Similarity=0.438 Sum_probs=162.3
Q ss_pred hhHHHHHhCCcEEEecCCCCCCCCCCCC---CCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 004456 546 TSSLIFLARRFAVLAGPSIPIIGEGDKL---PNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 622 (752)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~---~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~ 622 (752)
.....|+++||+|+.+++++..|+|... .........++|+.++++++.++..+|++||+|+|+|+||++++.++.+
T Consensus 5 ~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~~~ 84 (213)
T PF00326_consen 5 WNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAATQ 84 (213)
T ss_dssp HHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchhhcc
Confidence 4567888999999999998888887642 2234556779999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEccCCCCCCCCccC---cc----ccccchhhhHHHHHhcChhhhcCC--CCCCEEEEEeCCCCCCCCCHHH
Q 004456 623 APHLFCCGIARSGSYNKTLTPFG---FQ----TEFRTLWEATNVYIEMSPITHANK--IKKPILIIHGEVDDKVGLFPMQ 693 (752)
Q Consensus 623 ~p~~~~~~v~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~P~li~~G~~D~~v~~~~~~ 693 (752)
+|++|+++|+.+|+.+....... +. .+...++...+.|...+|+..+.+ +++|+||+||++|.+|| +.+
T Consensus 85 ~~~~f~a~v~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~P~li~hG~~D~~Vp--~~~ 162 (213)
T PF00326_consen 85 HPDRFKAAVAGAGVSDLFSYYGTTDIYTKAEYLEYGDPWDNPEFYRELSPISPADNVQIKPPVLIIHGENDPRVP--PSQ 162 (213)
T ss_dssp TCCGSSEEEEESE-SSTTCSBHHTCCHHHGHHHHHSSTTTSHHHHHHHHHGGGGGGCGGGSEEEEEEETTBSSST--THH
T ss_pred cceeeeeeeccceecchhcccccccccccccccccCccchhhhhhhhhccccccccccCCCCEEEEccCCCCccC--HHH
Confidence 99999999999999885543221 11 112344456777888888888888 88999999999999999 999
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHHHHhcC
Q 004456 694 AERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 743 (752)
Q Consensus 694 ~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~ 743 (752)
+.+++++|++.|++++++++|+++|.+...+....+...+.+||+++|++
T Consensus 163 s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l~~ 212 (213)
T PF00326_consen 163 SLRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYLKK 212 (213)
T ss_dssp HHHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999998877777789999999999999975
No 7
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.93 E-value=2.8e-24 Score=227.95 Aligned_cols=266 Identities=17% Similarity=0.187 Sum_probs=183.8
Q ss_pred ceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEE--EEEecCCCCC
Q 004456 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLL--IFTIPSSRRD 111 (752)
Q Consensus 34 ~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l--~~~~~~~~~~ 111 (752)
..+.++ +++|||++.......+ ....+||++|.+|+..++||.... ....+.|||||+.+ +|++...
T Consensus 140 g~~g~~--~~~iayv~~~~~~~~~-~~~~~l~~~d~dG~~~~~lt~~~~-----~~~sP~wSPDG~~~~~~y~S~~~--- 208 (428)
T PRK01029 140 GVPGIS--SGKIIFSLSTTNSDTE-LKQGELWSVDYDGQNLRPLTQEHS-----LSITPTWMHIGSGFPYLYVSYKL--- 208 (428)
T ss_pred CCCccc--cCEEEEEEeeCCcccc-cccceEEEEcCCCCCceEcccCCC-----CcccceEccCCCceEEEEEEccC---
Confidence 346666 9999999873211111 235799999999999999997654 23577999999874 4454321
Q ss_pred CCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCccccCCc-cceeccccCCCCceE
Q 004456 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYV 189 (752)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l 189 (752)
...+||++++ .|+.++++.. +....+.|||||++|
T Consensus 209 -------------------------------------------g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~L 245 (428)
T PRK01029 209 -------------------------------------------GVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLL 245 (428)
T ss_pred -------------------------------------------CCceEEEEECCCCCceEeecCCCCccceEECCCCCEE
Confidence 1168999999 5588888876 666789999999999
Q ss_pred EEEecccCccccccccCccccEEE--EecCC---ceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEecc
Q 004456 190 LITSMHRPYSYKVPCARFSQKVQV--WTTDG---KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (752)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~--~d~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~ 264 (752)
+|.+..... .++++ +++.+ +..++++..... ....++|||||+. |+|++..+
T Consensus 246 af~s~~~g~----------~di~~~~~~~~~g~~g~~~~lt~~~~~------------~~~~p~wSPDG~~-Laf~s~~~ 302 (428)
T PRK01029 246 AFISDRYGN----------PDLFIQSFSLETGAIGKPRRLLNEAFG------------TQGNPSFSPDGTR-LVFVSNKD 302 (428)
T ss_pred EEEECCCCC----------cceeEEEeecccCCCCcceEeecCCCC------------CcCCeEECCCCCE-EEEEECCC
Confidence 998754321 24555 45543 345556543211 0235799999999 88886332
Q ss_pred CCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceecccc
Q 004456 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 344 (752)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 344 (752)
....||+++++. .++..+.++........++|||||+.|+|..... +..+|++++++++ +.+.++..
T Consensus 303 ---------g~~~ly~~~~~~-~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~-g~~~I~v~dl~~g--~~~~Lt~~ 369 (428)
T PRK01029 303 ---------GRPRIYIMQIDP-EGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK-GVRQICVYDLATG--RDYQLTTS 369 (428)
T ss_pred ---------CCceEEEEECcc-cccceEEeccCCCCccceeECCCCCEEEEEEcCC-CCcEEEEEECCCC--CeEEccCC
Confidence 223688887721 2345667776666677899999999999987443 4568999999884 55666654
Q ss_pred ccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeecc
Q 004456 345 VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESN 414 (752)
Q Consensus 345 ~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~ 414 (752)
.... .. ..|||||++|+|.... .....||++|+.+++.++|+...
T Consensus 370 ~~~~-----~~--p~wSpDG~~L~f~~~~------------------~g~~~L~~vdl~~g~~~~Lt~~~ 414 (428)
T PRK01029 370 PENK-----ES--PSWAIDSLHLVYSAGN------------------SNESELYLISLITKKTRKIVIGS 414 (428)
T ss_pred CCCc-----cc--eEECCCCCEEEEEECC------------------CCCceEEEEECCCCCEEEeecCC
Confidence 2111 22 5599999999998732 12346999999999998887544
No 8
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.93 E-value=2.8e-24 Score=228.05 Aligned_cols=251 Identities=14% Similarity=0.076 Sum_probs=179.1
Q ss_pred cceeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCCe--EEEeeccccccccccCcceEEEEEcccCcceeccCCC
Q 004456 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR--IAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (752)
Q Consensus 4 ~~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~--ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~ 81 (752)
...||+++.++ +..++||... ..+..|+|||||++ ++|++.+ ++..+||++++++|+.++|+..+
T Consensus 164 ~~~l~~~d~dG----~~~~~lt~~~--~~~~sP~wSPDG~~~~~~y~S~~-------~g~~~I~~~~l~~g~~~~lt~~~ 230 (428)
T PRK01029 164 QGELWSVDYDG----QNLRPLTQEH--SLSITPTWMHIGSGFPYLYVSYK-------LGVPKIFLGSLENPAGKKILALQ 230 (428)
T ss_pred cceEEEEcCCC----CCceEcccCC--CCcccceEccCCCceEEEEEEcc-------CCCceEEEEECCCCCceEeecCC
Confidence 56899999988 9999998532 24788999999998 5556542 45689999999999999998766
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEE
Q 004456 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (752)
Q Consensus 82 ~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~ 161 (752)
.. ...+.|||||+.|+|++..... .++|+
T Consensus 231 g~-----~~~p~wSPDG~~Laf~s~~~g~----------------------------------------------~di~~ 259 (428)
T PRK01029 231 GN-----QLMPTFSPRKKLLAFISDRYGN----------------------------------------------PDLFI 259 (428)
T ss_pred CC-----ccceEECCCCCEEEEEECCCCC----------------------------------------------cceeE
Confidence 52 3467999999999998532110 23444
Q ss_pred --Ecc-C---CCccccCCc--cceeccccCCCCceEEEEecccCccccccccCccccEEEEecC--CceeEEecCCCCCC
Q 004456 162 --GSL-D---GTAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRELCDLPPAE 231 (752)
Q Consensus 162 --~~~-~---G~~~~l~~~--~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~--~~~~~~l~~~~~~~ 231 (752)
+++ . |+.++++.. +....++|||||++|+|.+.... ..+||+++++ ++..+.++.....
T Consensus 260 ~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g----------~~~ly~~~~~~~g~~~~~lt~~~~~- 328 (428)
T PRK01029 260 QSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG----------RPRIYIMQIDPEGQSPRLLTKKYRN- 328 (428)
T ss_pred EEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC----------CceEEEEECcccccceEEeccCCCC-
Confidence 344 2 356777754 34568999999999999875432 1368888775 3445666544322
Q ss_pred CCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCc
Q 004456 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSL 311 (752)
Q Consensus 232 ~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~ 311 (752)
...+.|||||++ |+|+...+ ....|+++|+ ++++.+.++........+.|||||+
T Consensus 329 ------------~~~p~wSPDG~~-Laf~~~~~---------g~~~I~v~dl---~~g~~~~Lt~~~~~~~~p~wSpDG~ 383 (428)
T PRK01029 329 ------------SSCPAWSPDGKK-IAFCSVIK---------GVRQICVYDL---ATGRDYQLTTSPENKESPSWAIDSL 383 (428)
T ss_pred ------------ccceeECCCCCE-EEEEEcCC---------CCcEEEEEEC---CCCCeEEccCCCCCccceEECCCCC
Confidence 346799999998 88886332 2347999998 6778888886655677899999999
Q ss_pred eEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCC
Q 004456 312 ALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTG 364 (752)
Q Consensus 312 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg 364 (752)
.|+|.+... +...||+++++++ +.+.++...... .. .+|||-.
T Consensus 384 ~L~f~~~~~-g~~~L~~vdl~~g--~~~~Lt~~~g~~-----~~--p~Ws~~~ 426 (428)
T PRK01029 384 HLVYSAGNS-NESELYLISLITK--KTRKIVIGSGEK-----RF--PSWGAFP 426 (428)
T ss_pred EEEEEECCC-CCceEEEEECCCC--CEEEeecCCCcc-----cC--ceecCCC
Confidence 999987543 4568999999884 556666533221 23 3488754
No 9
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.92 E-value=3e-23 Score=221.34 Aligned_cols=237 Identities=15% Similarity=0.133 Sum_probs=177.2
Q ss_pred CcceeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCC
Q 004456 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (752)
Q Consensus 3 ~~~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~ 82 (752)
|...|++++.++ +..++++... ..+..|+|||||++|||++.. .+..+||++++++|+.++++....
T Consensus 177 ~~~~l~~~d~dg----~~~~~lt~~~--~~~~~p~wSPDG~~la~~s~~-------~g~~~i~i~dl~~G~~~~l~~~~~ 243 (429)
T PRK03629 177 FPYELRVSDYDG----YNQFVVHRSP--QPLMSPAWSPDGSKLAYVTFE-------SGRSALVIQTLANGAVRQVASFPR 243 (429)
T ss_pred cceeEEEEcCCC----CCCEEeecCC--CceeeeEEcCCCCEEEEEEec-------CCCcEEEEEECCCCCeEEccCCCC
Confidence 455799999888 8888887432 258899999999999997641 345799999999999999986654
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEE
Q 004456 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (752)
Q Consensus 83 ~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~ 162 (752)
....+.|||||+.|+|+.... ...+||++
T Consensus 244 -----~~~~~~~SPDG~~La~~~~~~----------------------------------------------g~~~I~~~ 272 (429)
T PRK03629 244 -----HNGAPAFSPDGSKLAFALSKT----------------------------------------------GSLNLYVM 272 (429)
T ss_pred -----CcCCeEECCCCCEEEEEEcCC----------------------------------------------CCcEEEEE
Confidence 245789999999999974311 11479999
Q ss_pred cc-CCCccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCc
Q 004456 163 SL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (752)
Q Consensus 163 ~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (752)
++ +|+.++++.. .....+.|||||++|+|.+.... ..+||++++++++.++++.....
T Consensus 273 d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g----------~~~Iy~~d~~~g~~~~lt~~~~~---------- 332 (429)
T PRK03629 273 DLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAG----------RPQVYKVNINGGAPQRITWEGSQ---------- 332 (429)
T ss_pred ECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCC----------CceEEEEECCCCCeEEeecCCCC----------
Confidence 99 5688888876 56779999999999999986532 13789999998887777543221
Q ss_pred cccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecc
Q 004456 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK 320 (752)
Q Consensus 241 ~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~ 320 (752)
...+.|||||+. |+++...+ ....|+++|+ +++..+.|+.. .....++|||||+.|+|.+...
T Consensus 333 ---~~~~~~SpDG~~-Ia~~~~~~---------g~~~I~~~dl---~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~ 395 (429)
T PRK03629 333 ---NQDADVSSDGKF-MVMVSSNG---------GQQHIAKQDL---ATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQG 395 (429)
T ss_pred ---ccCEEECCCCCE-EEEEEccC---------CCceEEEEEC---CCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCC
Confidence 235799999998 88876322 2236888988 56677777743 3345799999999999998544
Q ss_pred cCceeEEEEcCCCCCccceeccc
Q 004456 321 TSQTRTWLVCPGSKDVAPRVLFD 343 (752)
Q Consensus 321 ~~~~~l~~~~~~~~~~~~~~l~~ 343 (752)
....|+++++++. ....+..
T Consensus 396 -~~~~l~~~~~~G~--~~~~l~~ 415 (429)
T PRK03629 396 -MGSVLNLVSTDGR--FKARLPA 415 (429)
T ss_pred -CceEEEEEECCCC--CeEECcc
Confidence 4567999999873 4455543
No 10
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.92 E-value=5.6e-23 Score=219.29 Aligned_cols=250 Identities=18% Similarity=0.194 Sum_probs=183.3
Q ss_pred CeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCC
Q 004456 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (752)
Q Consensus 43 ~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~ 122 (752)
++|||+.... +.....+||++|.+|+..+++|.... .+..+.|||||+.|+|.+...
T Consensus 164 ~riayv~~~~----~~~~~~~l~~~d~dg~~~~~lt~~~~-----~~~~p~wSPDG~~la~~s~~~-------------- 220 (429)
T PRK03629 164 TRIAYVVQTN----GGQFPYELRVSDYDGYNQFVVHRSPQ-----PLMSPAWSPDGSKLAYVTFES-------------- 220 (429)
T ss_pred CeEEEEEeeC----CCCcceeEEEEcCCCCCCEEeecCCC-----ceeeeEEcCCCCEEEEEEecC--------------
Confidence 7899987621 12345799999999999999987654 356789999999999985321
Q ss_pred ceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCccccCCc-cceeccccCCCCceEEEEecccCccc
Q 004456 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSY 200 (752)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~ 200 (752)
...+||++++ +|+.++++.. +....+.|||||++|+|......
T Consensus 221 --------------------------------g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g--- 265 (429)
T PRK03629 221 --------------------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG--- 265 (429)
T ss_pred --------------------------------CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCC---
Confidence 1158999999 5677777765 55678999999999999855321
Q ss_pred cccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEe
Q 004456 201 KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT 280 (752)
Q Consensus 201 ~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~ 280 (752)
..+|+++|+++++.++++..... ...+.|||||+. |+|++... ....||.
T Consensus 266 -------~~~I~~~d~~tg~~~~lt~~~~~-------------~~~~~wSPDG~~-I~f~s~~~---------g~~~Iy~ 315 (429)
T PRK03629 266 -------SLNLYVMDLASGQIRQVTDGRSN-------------NTEPTWFPDSQN-LAYTSDQA---------GRPQVYK 315 (429)
T ss_pred -------CcEEEEEECCCCCEEEccCCCCC-------------cCceEECCCCCE-EEEEeCCC---------CCceEEE
Confidence 13699999999988888765432 346799999998 88886321 2237999
Q ss_pred ccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceee
Q 004456 281 QPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360 (752)
Q Consensus 281 ~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~ 360 (752)
+++ +++..+.++........+.|||||+.|+|..... ...+|++++++++ +.+.++... .. .. .+|
T Consensus 316 ~d~---~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g--~~~~Lt~~~-~~-----~~--p~~ 381 (429)
T PRK03629 316 VNI---NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATG--GVQVLTDTF-LD-----ET--PSI 381 (429)
T ss_pred EEC---CCCCeEEeecCCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCC--CeEEeCCCC-CC-----CC--ceE
Confidence 988 6677777776555566799999999999987443 4467999999884 456666421 11 23 348
Q ss_pred CCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEee
Q 004456 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 412 (752)
Q Consensus 361 s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~ 412 (752)
||||++|+|.+.+ .....|++++++++..++|..
T Consensus 382 SpDG~~i~~~s~~------------------~~~~~l~~~~~~G~~~~~l~~ 415 (429)
T PRK03629 382 APNGTMVIYSSSQ------------------GMGSVLNLVSTDGRFKARLPA 415 (429)
T ss_pred CCCCCEEEEEEcC------------------CCceEEEEEECCCCCeEECcc
Confidence 9999999999843 223368999997666676653
No 11
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.92 E-value=3.7e-23 Score=222.35 Aligned_cols=236 Identities=14% Similarity=0.163 Sum_probs=176.3
Q ss_pred cceeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCc
Q 004456 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (752)
Q Consensus 4 ~~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~ 83 (752)
...|++++.++ +..++++... ..+..|+|||||++|||++.. .+..+||++++++|+.++++....
T Consensus 181 ~~~l~~~d~dg----~~~~~lt~~~--~~v~~p~wSpDG~~lay~s~~-------~g~~~i~~~dl~~g~~~~l~~~~g- 246 (435)
T PRK05137 181 IKRLAIMDQDG----ANVRYLTDGS--SLVLTPRFSPNRQEITYMSYA-------NGRPRVYLLDLETGQRELVGNFPG- 246 (435)
T ss_pred ceEEEEECCCC----CCcEEEecCC--CCeEeeEECCCCCEEEEEEec-------CCCCEEEEEECCCCcEEEeecCCC-
Confidence 56788988877 8888888432 258899999999999998642 345899999999999999976654
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEc
Q 004456 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (752)
Q Consensus 84 ~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~ 163 (752)
.+..+.|||||+.|+|+.... ...+||+++
T Consensus 247 ----~~~~~~~SPDG~~la~~~~~~----------------------------------------------g~~~Iy~~d 276 (435)
T PRK05137 247 ----MTFAPRFSPDGRKVVMSLSQG----------------------------------------------GNTDIYTMD 276 (435)
T ss_pred ----cccCcEECCCCCEEEEEEecC----------------------------------------------CCceEEEEE
Confidence 245779999999999874311 115899999
Q ss_pred c-CCCccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCcc
Q 004456 164 L-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (752)
Q Consensus 164 ~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (752)
+ +|+.++++.. .....+.|||||++|+|.+.... ..+||++++++++.++++.....
T Consensus 277 ~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g----------~~~Iy~~d~~g~~~~~lt~~~~~----------- 335 (435)
T PRK05137 277 LRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSG----------SPQLYVMNADGSNPRRISFGGGR----------- 335 (435)
T ss_pred CCCCceEEccCCCCccCceeEcCCCCEEEEEECCCC----------CCeEEEEECCCCCeEEeecCCCc-----------
Confidence 9 5588888877 55668999999999999875532 14799999999888888754322
Q ss_pred ccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeeccc
Q 004456 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (752)
Q Consensus 242 ~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~ 321 (752)
...+.|||||+. |+++.... ....|+++++ +++..+.++.. .....++|||||+.|+|.+....
T Consensus 336 --~~~~~~SpdG~~-ia~~~~~~---------~~~~i~~~d~---~~~~~~~lt~~-~~~~~p~~spDG~~i~~~~~~~~ 399 (435)
T PRK05137 336 --YSTPVWSPRGDL-IAFTKQGG---------GQFSIGVMKP---DGSGERILTSG-FLVEGPTWAPNGRVIMFFRQTPG 399 (435)
T ss_pred --ccCeEECCCCCE-EEEEEcCC---------CceEEEEEEC---CCCceEeccCC-CCCCCCeECCCCCEEEEEEccCC
Confidence 335699999998 88875321 2237888887 55666666543 35678999999999999875443
Q ss_pred C--ceeEEEEcCCCCCccceecc
Q 004456 322 S--QTRTWLVCPGSKDVAPRVLF 342 (752)
Q Consensus 322 ~--~~~l~~~~~~~~~~~~~~l~ 342 (752)
. ...||+++++++ ..+.+.
T Consensus 400 ~~~~~~L~~~dl~g~--~~~~l~ 420 (435)
T PRK05137 400 SGGAPKLYTVDLTGR--NEREVP 420 (435)
T ss_pred CCCcceEEEEECCCC--ceEEcc
Confidence 2 157999999874 344444
No 12
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.92 E-value=9.7e-23 Score=198.68 Aligned_cols=369 Identities=15% Similarity=0.150 Sum_probs=235.8
Q ss_pred cceeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCCeEEEe-eccccccccccCcceEEEEEcccCcceeccCCCC
Q 004456 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFS-VRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (752)
Q Consensus 4 ~~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~ia~~-~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~ 82 (752)
|-++|.+++.. |+.++||+ .-.-++.|+|||||++|||+ .+ ...+....+||+++.++|+.+++|....
T Consensus 58 ~DdlWe~slk~----g~~~ritS--~lGVvnn~kf~pdGrkvaf~rv~----~~ss~~taDly~v~~e~Ge~kRiTyfGr 127 (668)
T COG4946 58 CDDLWEYSLKD----GKPLRITS--GLGVVNNPKFSPDGRKVAFSRVM----LGSSLQTADLYVVPSEDGEAKRITYFGR 127 (668)
T ss_pred chHHHHhhhcc----CCeeEEec--ccceeccccCCCCCcEEEEEEEE----ecCCCccccEEEEeCCCCcEEEEEEecc
Confidence 66788888888 99999984 22358899999999999994 33 2233556899999999999999998732
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCC-------------CCCccCCCCCceecccc-cccccccchhhccCC----
Q 004456 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDP-------------PKKTMVPLGPKIQSNEQ-KNIIISRMTDNLLKD---- 144 (752)
Q Consensus 83 ~~~~~~~~~~~wspdg~~l~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---- 144 (752)
. ......|+|||+.|+.+ +..... ....+++.|+......+ +..+..|.+.+...|
T Consensus 128 -~---fT~VaG~~~dg~iiV~T--D~~tPF~q~~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntydLP~WK~Yk 201 (668)
T COG4946 128 -R---FTRVAGWIPDGEIIVST--DFHTPFSQWTELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYDLPHWKGYK 201 (668)
T ss_pred -c---cceeeccCCCCCEEEEe--ccCCCcccceeeeEEccCCceeeeccCCceeeEEEeCCEEEEccCcccCccccccc
Confidence 2 23456899999988865 111111 12234556665555432 223333333333222
Q ss_pred ---------hhhhh-hh------------------------hhhcccEEEEEccCC-CccccCCccceeccccCCCCceE
Q 004456 145 ---------EYDES-LF------------------------DYYTTAQLVLGSLDG-TAKDFGTPAVYTAVEPSPDQKYV 189 (752)
Q Consensus 145 ---------~~d~~-~~------------------------~~~~~~~i~~~~~~G-~~~~l~~~~~~~~~~~SpDGk~l 189 (752)
+.+++ .| ++.+.++||.+|++| ..++.|....+.....+.|||+|
T Consensus 202 GGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrI 281 (668)
T COG4946 202 GGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRI 281 (668)
T ss_pred CCccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEecccCccceEEeccCCchhhhcCCchhccccccCCCCcEE
Confidence 22221 11 222557899999999 88888888788888899999999
Q ss_pred EEEecccCccccccccCccccEEEEecCCceeEEecCC-CCC--CCCCcccCCccccccceeeeeCCCceEEEEEec---
Q 004456 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDL-PPA--EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ--- 263 (752)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~-~~~--~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~--- 263 (752)
+|.... +||++|.++...+.|.-. +.. ...+. +-.......+++.+ +|.. +++++..
T Consensus 282 vFq~~G--------------dIylydP~td~lekldI~lpl~rk~k~~k-~~~pskyledfa~~-~Gd~-ia~VSRGkaF 344 (668)
T COG4946 282 VFQNAG--------------DIYLYDPETDSLEKLDIGLPLDRKKKQPK-FVNPSKYLEDFAVV-NGDY-IALVSRGKAF 344 (668)
T ss_pred EEecCC--------------cEEEeCCCcCcceeeecCCcccccccccc-ccCHHHhhhhhccC-CCcE-EEEEecCcEE
Confidence 998544 799999998877766443 322 11111 10100011112221 2332 3333221
Q ss_pred -----c--------------------CCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeee
Q 004456 264 -----D--------------------RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETW 318 (752)
Q Consensus 264 -----~--------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~ 318 (752)
+ +.....-....+.|-+++. .+++.+.+...-+.+..+..|||||.++.+.
T Consensus 345 i~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~---~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN- 420 (668)
T COG4946 345 IMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDK---DGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN- 420 (668)
T ss_pred EECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEec---CCceEEEeeCCccceEEEEEcCCCcEEEEEc-
Confidence 1 0011111123346777777 6778888888888899999999999888865
Q ss_pred cccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeE
Q 004456 319 YKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLD 398 (752)
Q Consensus 319 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~ 398 (752)
.+.+||++|++++ .++.+-. +.... .-.|.|+|++++||++... |+ -..+|.
T Consensus 421 ---dr~el~vididng--nv~~idk-S~~~l-----Itdf~~~~nsr~iAYafP~-------------gy----~tq~Ik 472 (668)
T COG4946 421 ---DRFELWVIDIDNG--NVRLIDK-SEYGL-----ITDFDWHPNSRWIAYAFPE-------------GY----YTQSIK 472 (668)
T ss_pred ---CceEEEEEEecCC--CeeEecc-cccce-----eEEEEEcCCceeEEEecCc-------------ce----eeeeEE
Confidence 4567999999985 3343332 22221 1127899999999998722 21 234799
Q ss_pred EEecCCCceeEEeeccchhhhhceeeeecCCcceecccCCCEEEEEEecCC
Q 004456 399 LFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKT 449 (752)
Q Consensus 399 ~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~ 449 (752)
++|..+++.-.++.... .+..++|.|||++|+|-....-
T Consensus 473 lydm~~~Kiy~vTT~ta------------~DfsPaFD~d~ryLYfLs~RsL 511 (668)
T COG4946 473 LYDMDGGKIYDVTTPTA------------YDFSPAFDPDGRYLYFLSARSL 511 (668)
T ss_pred EEecCCCeEEEecCCcc------------cccCcccCCCCcEEEEEecccc
Confidence 99999999888876542 2335789999999999765443
No 13
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=1.3e-22 Score=218.21 Aligned_cols=254 Identities=15% Similarity=0.170 Sum_probs=185.1
Q ss_pred CCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCC
Q 004456 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (752)
Q Consensus 42 G~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~ 121 (752)
..+|||++... .......+||++|.+|+..+++|.+.. .+..+.|||||+.|+|++...
T Consensus 165 ~~~iafv~~~~---~~~~~~~~l~~~d~dg~~~~~lt~~~~-----~v~~p~wSpDG~~lay~s~~~------------- 223 (435)
T PRK05137 165 DTRIVYVAESG---PKNKRIKRLAIMDQDGANVRYLTDGSS-----LVLTPRFSPNRQEITYMSYAN------------- 223 (435)
T ss_pred CCeEEEEEeeC---CCCCcceEEEEECCCCCCcEEEecCCC-----CeEeeEECCCCCEEEEEEecC-------------
Confidence 46899987521 001125799999999999999987654 356889999999999985421
Q ss_pred CceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCccccCCc-cceeccccCCCCceEEEEecccCcc
Q 004456 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (752)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~ 199 (752)
...+||++++ +|+.++++.. +....+.|||||++|+|......
T Consensus 224 ---------------------------------g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g-- 268 (435)
T PRK05137 224 ---------------------------------GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG-- 268 (435)
T ss_pred ---------------------------------CCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC--
Confidence 1158999999 6677778766 66779999999999999865432
Q ss_pred ccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEE
Q 004456 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (752)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~ 279 (752)
..+||++|+++++.++++..... ...+.|||||++ |+|.+..+ ....||
T Consensus 269 --------~~~Iy~~d~~~~~~~~Lt~~~~~-------------~~~~~~spDG~~-i~f~s~~~---------g~~~Iy 317 (435)
T PRK05137 269 --------NTDIYTMDLRSGTTTRLTDSPAI-------------DTSPSYSPDGSQ-IVFESDRS---------GSPQLY 317 (435)
T ss_pred --------CceEEEEECCCCceEEccCCCCc-------------cCceeEcCCCCE-EEEEECCC---------CCCeEE
Confidence 24799999999988888765433 345799999998 88886321 233799
Q ss_pred eccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCcee
Q 004456 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 359 (752)
Q Consensus 280 ~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~ 359 (752)
++++ +++..+.++........+.|||||+.|+|..... ...+|++++++++ ..+.++... . ... ++
T Consensus 318 ~~d~---~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~-~~~~i~~~d~~~~--~~~~lt~~~-~-----~~~--p~ 383 (435)
T PRK05137 318 VMNA---DGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGG-GQFSIGVMKPDGS--GERILTSGF-L-----VEG--PT 383 (435)
T ss_pred EEEC---CCCCeEEeecCCCcccCeEECCCCCEEEEEEcCC-CceEEEEEECCCC--ceEeccCCC-C-----CCC--Ce
Confidence 9998 6777888887666677899999999999987433 4468999998763 344554321 1 123 45
Q ss_pred eCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEe
Q 004456 360 RTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 411 (752)
Q Consensus 360 ~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~ 411 (752)
|||||+.|+|..... +. .....||++|++++..+.|.
T Consensus 384 ~spDG~~i~~~~~~~------------~~---~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 384 WAPNGRVIMFFRQTP------------GS---GGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred ECCCCCEEEEEEccC------------CC---CCcceEEEEECCCCceEEcc
Confidence 999999999987431 10 01247999999887776664
No 14
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=8.4e-23 Score=214.89 Aligned_cols=232 Identities=10% Similarity=0.042 Sum_probs=172.8
Q ss_pred cceeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCCe-EEEeeccccccccccCcceEEEEEcccCcceeccCCCC
Q 004456 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR-IAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (752)
Q Consensus 4 ~~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~-ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~ 82 (752)
...|++++.++ ...++++. .+ ....|+|||||++ ++|++.. ....+||++++++|+.++|+..++
T Consensus 168 ~~~l~~~d~dg----~~~~~~~~--~~-~~~~p~wSpDG~~~i~y~s~~-------~~~~~Iyv~dl~tg~~~~lt~~~g 233 (419)
T PRK04043 168 KSNIVLADYTL----TYQKVIVK--GG-LNIFPKWANKEQTAFYYTSYG-------ERKPTLYKYNLYTGKKEKIASSQG 233 (419)
T ss_pred cceEEEECCCC----CceeEEcc--CC-CeEeEEECCCCCcEEEEEEcc-------CCCCEEEEEECCCCcEEEEecCCC
Confidence 45788888777 66777763 23 4778999999997 6665541 235799999999999999986544
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEE
Q 004456 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (752)
Q Consensus 83 ~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~ 162 (752)
....+.|||||+.|+|+.... ...+||++
T Consensus 234 -----~~~~~~~SPDG~~la~~~~~~----------------------------------------------g~~~Iy~~ 262 (419)
T PRK04043 234 -----MLVVSDVSKDGSKLLLTMAPK----------------------------------------------GQPDIYLY 262 (419)
T ss_pred -----cEEeeEECCCCCEEEEEEccC----------------------------------------------CCcEEEEE
Confidence 234578999999999985321 11689999
Q ss_pred cc-CCCccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCc
Q 004456 163 SL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (752)
Q Consensus 163 ~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (752)
++ +|+.++++.. .....+.|||||++|+|++.+.. ..+|+++++++++.++++....
T Consensus 263 dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g----------~~~Iy~~dl~~g~~~rlt~~g~----------- 321 (419)
T PRK04043 263 DTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG----------YPNIFMKKLNSGSVEQVVFHGK----------- 321 (419)
T ss_pred ECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEeCccCCC-----------
Confidence 99 5588889877 44568899999999999987642 2489999999998877764321
Q ss_pred cccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecc
Q 004456 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK 320 (752)
Q Consensus 241 ~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~ 320 (752)
....|||||+. |+|+........ ......|+++++ +++..+.|+... ....|+|||||+.|+|.+..
T Consensus 322 ----~~~~~SPDG~~-Ia~~~~~~~~~~---~~~~~~I~v~d~---~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~- 388 (419)
T PRK04043 322 ----NNSSVSTYKNY-IVYSSRETNNEF---GKNTFNLYLIST---NSDYIRRLTANG-VNQFPRFSSDGGSIMFIKYL- 388 (419)
T ss_pred ----cCceECCCCCE-EEEEEcCCCccc---CCCCcEEEEEEC---CCCCeEECCCCC-CcCCeEECCCCCEEEEEEcc-
Confidence 13489999999 888864322110 012348999998 677888888653 44579999999999999855
Q ss_pred cCceeEEEEcCCCC
Q 004456 321 TSQTRTWLVCPGSK 334 (752)
Q Consensus 321 ~~~~~l~~~~~~~~ 334 (752)
.....|+++++++.
T Consensus 389 ~~~~~L~~~~l~g~ 402 (419)
T PRK04043 389 GNQSALGIIRLNYN 402 (419)
T ss_pred CCcEEEEEEecCCC
Confidence 46678999999884
No 15
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=2.5e-22 Score=215.04 Aligned_cols=235 Identities=16% Similarity=0.112 Sum_probs=171.2
Q ss_pred cceeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCc
Q 004456 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (752)
Q Consensus 4 ~~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~ 83 (752)
...|++++.++ +..++|+... ..+..|+|||||++|||++.. ++..+||++++++|+.++++....
T Consensus 197 ~~~l~i~d~dG----~~~~~l~~~~--~~~~~p~wSPDG~~La~~s~~-------~g~~~L~~~dl~tg~~~~lt~~~g- 262 (448)
T PRK04792 197 PYQLMIADYDG----YNEQMLLRSP--EPLMSPAWSPDGRKLAYVSFE-------NRKAEIFVQDIYTQVREKVTSFPG- 262 (448)
T ss_pred ceEEEEEeCCC----CCceEeecCC--CcccCceECCCCCEEEEEEec-------CCCcEEEEEECCCCCeEEecCCCC-
Confidence 34677777666 6677777433 247889999999999998642 345799999999999999976553
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEc
Q 004456 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (752)
Q Consensus 84 ~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~ 163 (752)
....+.|||||+.|+|+.... ...+||+++
T Consensus 263 ----~~~~~~wSPDG~~La~~~~~~----------------------------------------------g~~~Iy~~d 292 (448)
T PRK04792 263 ----INGAPRFSPDGKKLALVLSKD----------------------------------------------GQPEIYVVD 292 (448)
T ss_pred ----CcCCeeECCCCCEEEEEEeCC----------------------------------------------CCeEEEEEE
Confidence 234679999999999874321 115899999
Q ss_pred c-CCCccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCcc
Q 004456 164 L-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (752)
Q Consensus 164 ~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (752)
+ +|+.++++.. .....++|||||++|+|++.... ..+||++++++++.++++.....
T Consensus 293 l~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g----------~~~Iy~~dl~~g~~~~Lt~~g~~----------- 351 (448)
T PRK04792 293 IATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGG----------KPQIYRVNLASGKVSRLTFEGEQ----------- 351 (448)
T ss_pred CCCCCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEEecCCCC-----------
Confidence 9 5588888876 55678999999999999875432 14799999998888777632211
Q ss_pred ccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeeccc
Q 004456 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (752)
Q Consensus 242 ~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~ 321 (752)
...++|||||+. |+|+.... ....|+++++ +++..+.++... ....++|||||+.|+|.....
T Consensus 352 --~~~~~~SpDG~~-l~~~~~~~---------g~~~I~~~dl---~~g~~~~lt~~~-~d~~ps~spdG~~I~~~~~~~- 414 (448)
T PRK04792 352 --NLGGSITPDGRS-MIMVNRTN---------GKFNIARQDL---ETGAMQVLTSTR-LDESPSVAPNGTMVIYSTTYQ- 414 (448)
T ss_pred --CcCeeECCCCCE-EEEEEecC---------CceEEEEEEC---CCCCeEEccCCC-CCCCceECCCCCEEEEEEecC-
Confidence 224699999998 88875321 2337888888 566677776442 334689999999999988544
Q ss_pred CceeEEEEcCCCCCccceecc
Q 004456 322 SQTRTWLVCPGSKDVAPRVLF 342 (752)
Q Consensus 322 ~~~~l~~~~~~~~~~~~~~l~ 342 (752)
+...||+++.++. ....+.
T Consensus 415 g~~~l~~~~~~G~--~~~~l~ 433 (448)
T PRK04792 415 GKQVLAAVSIDGR--FKARLP 433 (448)
T ss_pred CceEEEEEECCCC--ceEECc
Confidence 5567999998763 344454
No 16
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=99.91 E-value=4.1e-21 Score=195.70 Aligned_cols=290 Identities=19% Similarity=0.175 Sum_probs=221.3
Q ss_pred ecccCCCEEEEEEecCCCCcEEEEEECCCCCeeEeecCCCCCCCcCCCceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCC
Q 004456 433 DINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGP 512 (752)
Q Consensus 433 ~~s~d~~~l~~~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~ 512 (752)
+-+.+|+.+++...+...|+.+|+.++.+++.+.+...+.. .+...+.+|+....+.||.+|+.+++. ++.+.. +
T Consensus 346 ~~~~~g~ev~l~~t~F~tP~~~~r~~~~~~eLe~ik~~p~~-FDa~~~~veQ~~atSkDGT~IPYFiv~-K~~~~d---~ 420 (648)
T COG1505 346 SADKDGDEVFLAFTSFTTPSTLYRLDLFGGELEVIREQPVQ-FDADNYEVEQFFATSKDGTRIPYFIVR-KGAKKD---E 420 (648)
T ss_pred cCCCCCcEEEEEeecccCCCceEEEecCCceehhhhhccCC-cCccCceEEEEEEEcCCCccccEEEEe-cCCcCC---C
Confidence 45678899999999999999999999999988888765433 345678899999999999999999998 775433 4
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCCchh---HHHHHHHHHHH
Q 004456 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRF---VEQLVSSAEAA 589 (752)
Q Consensus 513 ~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~---~~~~~~d~~~~ 589 (752)
.|++|+.+||.... -.| .|+ .....++++|.+-+..+-+++..+|........ -....+|+.++
T Consensus 421 ~pTll~aYGGF~vs--------ltP-~fs----~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AV 487 (648)
T COG1505 421 NPTLLYAYGGFNIS--------LTP-RFS----GSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAV 487 (648)
T ss_pred CceEEEeccccccc--------cCC-ccc----hhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHH
Confidence 79999999984321 111 122 223677788876666455555555544222111 12457999999
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC-----ccCcccccc--chhhhHHHHHh
Q 004456 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT-----PFGFQTEFR--TLWEATNVYIE 662 (752)
Q Consensus 590 ~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~ 662 (752)
++.|+++++..++++++.|.|.||.++..++.+.|+.|.|+|+..|+.|+... ...|..+.+ ...++...+..
T Consensus 488 aedLi~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evPllDMlRYh~l~aG~sW~~EYG~Pd~P~d~~~l~~ 567 (648)
T COG1505 488 AEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLDMLRYHLLTAGSSWIAEYGNPDDPEDRAFLLA 567 (648)
T ss_pred HHHHHHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceeeccchhhhhhhcccccchhhHhhcCCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999884321 112222322 22345567788
Q ss_pred cChhhhcCCC--CCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccH-HHHHHHHHHHHHH
Q 004456 663 MSPITHANKI--KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENV-MHVIWETDRWLQK 739 (752)
Q Consensus 663 ~~~~~~~~~~--~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~-~~~~~~~~~fl~~ 739 (752)
+||+.+++.- -+|+||-.+.+|.+|. +.++++++++|++.+.++-+.+=.++||+....... ......+..||.+
T Consensus 568 YSPy~nl~~g~kYP~~LITTs~~DDRVH--PaHarKfaa~L~e~~~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r 645 (648)
T COG1505 568 YSPYHNLKPGQKYPPTLITTSLHDDRVH--PAHARKFAAKLQEVGAPVLLREETKGGHGGAAPTAEIARELADLLAFLLR 645 (648)
T ss_pred cCchhcCCccccCCCeEEEccccccccc--chHHHHHHHHHHhcCCceEEEeecCCcccCCCChHHHHHHHHHHHHHHHH
Confidence 8999988652 3899999999999998 999999999999999998888888999986543332 4556678999998
Q ss_pred Hhc
Q 004456 740 YCL 742 (752)
Q Consensus 740 ~l~ 742 (752)
.|+
T Consensus 646 ~L~ 648 (648)
T COG1505 646 TLG 648 (648)
T ss_pred hhC
Confidence 873
No 17
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=6.3e-22 Score=211.57 Aligned_cols=227 Identities=16% Similarity=0.148 Sum_probs=166.9
Q ss_pred ceeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCcc
Q 004456 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (752)
Q Consensus 5 ~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~ 84 (752)
..|++++.++ ...++++... ..+..|+|||||++|||++.. +...+||++++++|+.++++..+.
T Consensus 176 ~~L~~~D~dG----~~~~~l~~~~--~~v~~p~wSPDG~~la~~s~~-------~~~~~I~~~dl~~g~~~~l~~~~g-- 240 (427)
T PRK02889 176 YQLQISDADG----QNAQSALSSP--EPIISPAWSPDGTKLAYVSFE-------SKKPVVYVHDLATGRRRVVANFKG-- 240 (427)
T ss_pred cEEEEECCCC----CCceEeccCC--CCcccceEcCCCCEEEEEEcc-------CCCcEEEEEECCCCCEEEeecCCC--
Confidence 3577877766 6667776433 347899999999999997642 345789999999999999875543
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc
Q 004456 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (752)
Q Consensus 85 ~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~ 164 (752)
....+.|||||+.|+|+.... ...+||.+++
T Consensus 241 ---~~~~~~~SPDG~~la~~~~~~----------------------------------------------g~~~Iy~~d~ 271 (427)
T PRK02889 241 ---SNSAPAWSPDGRTLAVALSRD----------------------------------------------GNSQIYTVNA 271 (427)
T ss_pred ---CccceEECCCCCEEEEEEccC----------------------------------------------CCceEEEEEC
Confidence 235789999999999874311 1158999999
Q ss_pred C-CCccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccc
Q 004456 165 D-GTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (752)
Q Consensus 165 ~-G~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (752)
+ ++.++++.. .....+.|||||++|+|.+.... ..+||.++++++..++++.....
T Consensus 272 ~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g----------~~~Iy~~~~~~g~~~~lt~~g~~------------ 329 (427)
T PRK02889 272 DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGG----------APQIYRMPASGGAAQRVTFTGSY------------ 329 (427)
T ss_pred CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCC----------CcEEEEEECCCCceEEEecCCCC------------
Confidence 5 477888776 55668999999999999865431 13788888888777776533211
Q ss_pred cccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccC
Q 004456 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (752)
Q Consensus 243 ~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~ 322 (752)
...++|||||++ |++++... ....|+++++ .++..+.++.. .....++|||||+.|+|..... +
T Consensus 330 -~~~~~~SpDG~~-Ia~~s~~~---------g~~~I~v~d~---~~g~~~~lt~~-~~~~~p~~spdg~~l~~~~~~~-g 393 (427)
T PRK02889 330 -NTSPRISPDGKL-LAYISRVG---------GAFKLYVQDL---ATGQVTALTDT-TRDESPSFAPNGRYILYATQQG-G 393 (427)
T ss_pred -cCceEECCCCCE-EEEEEccC---------CcEEEEEEEC---CCCCeEEccCC-CCccCceECCCCCEEEEEEecC-C
Confidence 225699999998 88876321 2237899998 56667777654 2346799999999999998655 5
Q ss_pred ceeEEEEcCCC
Q 004456 323 QTRTWLVCPGS 333 (752)
Q Consensus 323 ~~~l~~~~~~~ 333 (752)
...|+.+++++
T Consensus 394 ~~~l~~~~~~g 404 (427)
T PRK02889 394 RSVLAAVSSDG 404 (427)
T ss_pred CEEEEEEECCC
Confidence 57899999976
No 18
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=1.4e-21 Score=208.98 Aligned_cols=246 Identities=17% Similarity=0.207 Sum_probs=176.0
Q ss_pred CeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCC
Q 004456 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (752)
Q Consensus 43 ~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~ 122 (752)
.+|||++.. .+..+||++|.+|...++++.... .+..+.|||||+.|+|++...
T Consensus 164 ~~iayv~~~-------~~~~~L~~~D~dG~~~~~l~~~~~-----~v~~p~wSPDG~~la~~s~~~-------------- 217 (427)
T PRK02889 164 TRIAYVIKT-------GNRYQLQISDADGQNAQSALSSPE-----PIISPAWSPDGTKLAYVSFES-------------- 217 (427)
T ss_pred cEEEEEEcc-------CCccEEEEECCCCCCceEeccCCC-----CcccceEcCCCCEEEEEEccC--------------
Confidence 579998641 345789999998888898876554 356789999999999985421
Q ss_pred ceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCccccCCc-cceeccccCCCCceEEEEecccCccc
Q 004456 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSY 200 (752)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~ 200 (752)
...+||++++ +|+.++++.. +....+.|||||++|+|......
T Consensus 218 --------------------------------~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g--- 262 (427)
T PRK02889 218 --------------------------------KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDG--- 262 (427)
T ss_pred --------------------------------CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC---
Confidence 1157999999 5677777655 66678999999999999765432
Q ss_pred cccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEe
Q 004456 201 KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT 280 (752)
Q Consensus 201 ~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~ 280 (752)
..+||++|++++..++++..... ...+.|||||++ |+|++... ....||.
T Consensus 263 -------~~~Iy~~d~~~~~~~~lt~~~~~-------------~~~~~wSpDG~~-l~f~s~~~---------g~~~Iy~ 312 (427)
T PRK02889 263 -------NSQIYTVNADGSGLRRLTQSSGI-------------DTEPFFSPDGRS-IYFTSDRG---------GAPQIYR 312 (427)
T ss_pred -------CceEEEEECCCCCcEECCCCCCC-------------CcCeEEcCCCCE-EEEEecCC---------CCcEEEE
Confidence 24799999988887777664322 235699999999 88875321 2237888
Q ss_pred ccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceee
Q 004456 281 QPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360 (752)
Q Consensus 281 ~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~ 360 (752)
+++ +++..+.++........++|||||++|+|.+... +..+|+++++.++ +.+.++..... .. .+|
T Consensus 313 ~~~---~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~-g~~~I~v~d~~~g--~~~~lt~~~~~------~~--p~~ 378 (427)
T PRK02889 313 MPA---SGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG-GAFKLYVQDLATG--QVTALTDTTRD------ES--PSF 378 (427)
T ss_pred EEC---CCCceEEEecCCCCcCceEECCCCCEEEEEEccC-CcEEEEEEECCCC--CeEEccCCCCc------cC--ceE
Confidence 887 5566667764444455789999999999987443 4457999999884 45566543211 23 459
Q ss_pred CCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEe
Q 004456 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 411 (752)
Q Consensus 361 s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~ 411 (752)
||||+.|+|.... .....|+++++.+...+++.
T Consensus 379 spdg~~l~~~~~~------------------~g~~~l~~~~~~g~~~~~l~ 411 (427)
T PRK02889 379 APNGRYILYATQQ------------------GGRSVLAAVSSDGRIKQRLS 411 (427)
T ss_pred CCCCCEEEEEEec------------------CCCEEEEEEECCCCceEEee
Confidence 9999999999843 22346899998544444453
No 19
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=1.6e-21 Score=208.90 Aligned_cols=249 Identities=18% Similarity=0.168 Sum_probs=178.2
Q ss_pred CeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCC
Q 004456 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (752)
Q Consensus 43 ~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~ 122 (752)
.+|||++... ......+||++|.+|...+++|.... .+..+.|||||+.|+|++...
T Consensus 183 ~riayv~~~~----~~~~~~~l~i~d~dG~~~~~l~~~~~-----~~~~p~wSPDG~~La~~s~~~-------------- 239 (448)
T PRK04792 183 TRIAYVVVND----KDKYPYQLMIADYDGYNEQMLLRSPE-----PLMSPAWSPDGRKLAYVSFEN-------------- 239 (448)
T ss_pred CEEEEEEeeC----CCCCceEEEEEeCCCCCceEeecCCC-----cccCceECCCCCEEEEEEecC--------------
Confidence 5788876521 11224689999999998999987765 356789999999999985421
Q ss_pred ceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCccccCCc-cceeccccCCCCceEEEEecccCccc
Q 004456 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSY 200 (752)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~ 200 (752)
...+||++++ +|+.++++.. +....+.|||||++|+|......
T Consensus 240 --------------------------------g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g--- 284 (448)
T PRK04792 240 --------------------------------RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG--- 284 (448)
T ss_pred --------------------------------CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC---
Confidence 1158999999 5577777755 45568999999999999765432
Q ss_pred cccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEe
Q 004456 201 KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT 280 (752)
Q Consensus 201 ~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~ 280 (752)
..+|+++|+++++.++++..... ...++|||||++ |+|++..+ ....||+
T Consensus 285 -------~~~Iy~~dl~tg~~~~lt~~~~~-------------~~~p~wSpDG~~-I~f~s~~~---------g~~~Iy~ 334 (448)
T PRK04792 285 -------QPEIYVVDIATKALTRITRHRAI-------------DTEPSWHPDGKS-LIFTSERG---------GKPQIYR 334 (448)
T ss_pred -------CeEEEEEECCCCCeEECccCCCC-------------ccceEECCCCCE-EEEEECCC---------CCceEEE
Confidence 24799999999988887765322 345799999998 88876322 2337999
Q ss_pred ccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceee
Q 004456 281 QPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360 (752)
Q Consensus 281 ~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~ 360 (752)
+++ ++++.+.++........++|||||+.|+|..... ...+||+++++++ ....++.... + ..| +|
T Consensus 335 ~dl---~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~-g~~~I~~~dl~~g--~~~~lt~~~~-d-----~~p--s~ 400 (448)
T PRK04792 335 VNL---ASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTN-GKFNIARQDLETG--AMQVLTSTRL-D-----ESP--SV 400 (448)
T ss_pred EEC---CCCCEEEEecCCCCCcCeeECCCCCEEEEEEecC-CceEEEEEECCCC--CeEEccCCCC-C-----CCc--eE
Confidence 998 6667777764433445689999999999987443 4568999999884 4556654321 1 233 49
Q ss_pred CCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEe
Q 004456 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 411 (752)
Q Consensus 361 s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~ 411 (752)
||||++|+|.... .....|++++.+++..+++.
T Consensus 401 spdG~~I~~~~~~------------------~g~~~l~~~~~~G~~~~~l~ 433 (448)
T PRK04792 401 APNGTMVIYSTTY------------------QGKQVLAAVSIDGRFKARLP 433 (448)
T ss_pred CCCCCEEEEEEec------------------CCceEEEEEECCCCceEECc
Confidence 9999999998733 22335899998655556554
No 20
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=8.1e-22 Score=211.63 Aligned_cols=235 Identities=14% Similarity=0.098 Sum_probs=173.4
Q ss_pred ceeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCcc
Q 004456 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (752)
Q Consensus 5 ~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~ 84 (752)
..|++++.++ +..++|+... ..+..|+|||||++|||++.. .+..+||++++++|+.++++....
T Consensus 184 ~~l~i~D~~g----~~~~~lt~~~--~~v~~p~wSpDg~~la~~s~~-------~~~~~l~~~dl~~g~~~~l~~~~g-- 248 (433)
T PRK04922 184 YALQVADSDG----YNPQTILRSA--EPILSPAWSPDGKKLAYVSFE-------RGRSAIYVQDLATGQRELVASFRG-- 248 (433)
T ss_pred EEEEEECCCC----CCceEeecCC--CccccccCCCCCCEEEEEecC-------CCCcEEEEEECCCCCEEEeccCCC--
Confidence 4588888766 7788887432 348899999999999997642 345789999999999999876543
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc
Q 004456 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (752)
Q Consensus 85 ~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~ 164 (752)
....+.|||||+.|+|+.... ...+||++++
T Consensus 249 ---~~~~~~~SpDG~~l~~~~s~~----------------------------------------------g~~~Iy~~d~ 279 (433)
T PRK04922 249 ---INGAPSFSPDGRRLALTLSRD----------------------------------------------GNPEIYVMDL 279 (433)
T ss_pred ---CccCceECCCCCEEEEEEeCC----------------------------------------------CCceEEEEEC
Confidence 234679999999999874321 1158999999
Q ss_pred -CCCccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccc
Q 004456 165 -DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (752)
Q Consensus 165 -~G~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (752)
+|+.++++.. .....++|||||++|+|.+.... ..+||++++++++.++++.....
T Consensus 280 ~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g----------~~~iy~~dl~~g~~~~lt~~g~~------------ 337 (433)
T PRK04922 280 GSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGG----------RPQIYRVAASGGSAERLTFQGNY------------ 337 (433)
T ss_pred CCCCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEeecCCCC------------
Confidence 6688888776 45568999999999999975532 13799999988877777643211
Q ss_pred cccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccC
Q 004456 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (752)
Q Consensus 243 ~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~ 322 (752)
...++|||||++ |++....+ ....|+++++ .++..+.++... ....+.|||||+.|+|.+... +
T Consensus 338 -~~~~~~SpDG~~-Ia~~~~~~---------~~~~I~v~d~---~~g~~~~Lt~~~-~~~~p~~spdG~~i~~~s~~~-g 401 (433)
T PRK04922 338 -NARASVSPDGKK-IAMVHGSG---------GQYRIAVMDL---STGSVRTLTPGS-LDESPSFAPNGSMVLYATREG-G 401 (433)
T ss_pred -ccCEEECCCCCE-EEEEECCC---------CceeEEEEEC---CCCCeEECCCCC-CCCCceECCCCCEEEEEEecC-C
Confidence 235799999998 88875321 2237899998 566777776543 345789999999999988653 5
Q ss_pred ceeEEEEcCCCCCccceeccc
Q 004456 323 QTRTWLVCPGSKDVAPRVLFD 343 (752)
Q Consensus 323 ~~~l~~~~~~~~~~~~~~l~~ 343 (752)
...||.+++++ ...+.++.
T Consensus 402 ~~~L~~~~~~g--~~~~~l~~ 420 (433)
T PRK04922 402 RGVLAAVSTDG--RVRQRLVS 420 (433)
T ss_pred ceEEEEEECCC--CceEEccc
Confidence 67899999977 34455543
No 21
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=1.3e-21 Score=210.07 Aligned_cols=252 Identities=16% Similarity=0.178 Sum_probs=180.5
Q ss_pred CCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCC
Q 004456 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (752)
Q Consensus 42 G~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~ 121 (752)
+.+|||++... .......+||++|.+++..++||.+.. .+..+.|||||+.|+|++...
T Consensus 167 ~~~ia~v~~~~---~~~~~~~~l~i~D~~g~~~~~lt~~~~-----~v~~p~wSpDg~~la~~s~~~------------- 225 (433)
T PRK04922 167 WTRIAYVTVSG---AGGAMRYALQVADSDGYNPQTILRSAE-----PILSPAWSPDGKKLAYVSFER------------- 225 (433)
T ss_pred cceEEEEEEeC---CCCCceEEEEEECCCCCCceEeecCCC-----ccccccCCCCCCEEEEEecCC-------------
Confidence 56799987521 111234689999999999999987654 356789999999999985321
Q ss_pred CceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCccccCCc-cceeccccCCCCceEEEEecccCcc
Q 004456 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (752)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~ 199 (752)
...+||++++ +|+.++++.. +....+.|||||++|+|......
T Consensus 226 ---------------------------------~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g-- 270 (433)
T PRK04922 226 ---------------------------------GRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG-- 270 (433)
T ss_pred ---------------------------------CCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC--
Confidence 1158999999 5577777655 55568999999999999764432
Q ss_pred ccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEE
Q 004456 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (752)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~ 279 (752)
..+|+++++.+++.++++..... ...++|||||++ |+|.+... ....||
T Consensus 271 --------~~~Iy~~d~~~g~~~~lt~~~~~-------------~~~~~~spDG~~-l~f~sd~~---------g~~~iy 319 (433)
T PRK04922 271 --------NPEIYVMDLGSRQLTRLTNHFGI-------------DTEPTWAPDGKS-IYFTSDRG---------GRPQIY 319 (433)
T ss_pred --------CceEEEEECCCCCeEECccCCCC-------------ccceEECCCCCE-EEEEECCC---------CCceEE
Confidence 14799999999988887655322 235799999998 88886322 223799
Q ss_pred eccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCcee
Q 004456 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 359 (752)
Q Consensus 280 ~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~ 359 (752)
++++ +++..+.++........++|||||+.|+|.... .+..+|+++++.++ ..+.++.... . .. ++
T Consensus 320 ~~dl---~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g--~~~~Lt~~~~-~-----~~--p~ 385 (433)
T PRK04922 320 RVAA---SGGSAERLTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTG--SVRTLTPGSL-D-----ES--PS 385 (433)
T ss_pred EEEC---CCCCeEEeecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCC--CeEECCCCCC-C-----CC--ce
Confidence 9988 566677776544455679999999999998643 34458999999874 4566664421 1 22 35
Q ss_pred eCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEee
Q 004456 360 RTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 412 (752)
Q Consensus 360 ~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~ 412 (752)
|||||++|+|.+.. .....|++++++++..+++..
T Consensus 386 ~spdG~~i~~~s~~------------------~g~~~L~~~~~~g~~~~~l~~ 420 (433)
T PRK04922 386 FAPNGSMVLYATRE------------------GGRGVLAAVSTDGRVRQRLVS 420 (433)
T ss_pred ECCCCCEEEEEEec------------------CCceEEEEEECCCCceEEccc
Confidence 99999999998733 223469999997766666653
No 22
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.6e-20 Score=189.68 Aligned_cols=291 Identities=20% Similarity=0.209 Sum_probs=206.3
Q ss_pred ccCCCEEEEEEecCCCCcEEEEEECCCCCe--eEeecCCC--CCCCcCCCceEEEEEEcCCCcEEEEEEEeCCCCCCCCC
Q 004456 435 NLNQLKILTSKESKTEITQYHILSWPLKKS--SQITNFPH--PYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKD 510 (752)
Q Consensus 435 s~d~~~l~~~~~~~~~~~~i~~~d~~~g~~--~~lt~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~ 510 (752)
..+++.+.|...|+-.|+.||.+|+.++.. ..+..... +...-....++++.+++.||..|+.++++-+..+. .
T Consensus 390 ~~~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~vf~e~~~~lpg~~~s~y~~~r~~~~SkDGt~VPM~Iv~kk~~k~--d 467 (712)
T KOG2237|consen 390 DFKSSTIRFQFSSFLTPGSIYDYDLANGKPEPSVFREITVVLPGFDASDYVVERIEVSSKDGTKVPMFIVYKKDIKL--D 467 (712)
T ss_pred CCCCceEEEEEeccCCCCeEEEeeccCCCCCCcceeeeccccCcccccceEEEEEEEecCCCCccceEEEEechhhh--c
Confidence 456788999999999999999999998732 22333322 33444567899999999999999999998555432 3
Q ss_pred CCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCCchhH---HHHHHHHH
Q 004456 511 GPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFV---EQLVSSAE 587 (752)
Q Consensus 511 ~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~---~~~~~d~~ 587 (752)
++.|++|+.||+..+.... .|+ .....|+.+|++....+-+++.++|+.......+ ...+.|++
T Consensus 468 g~~P~LLygYGay~isl~p---------~f~----~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfi 534 (712)
T KOG2237|consen 468 GSKPLLLYGYGAYGISLDP---------SFR----ASRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFI 534 (712)
T ss_pred CCCceEEEEecccceeecc---------ccc----cceeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHH
Confidence 4589999999986543211 122 1223556799988776767777777764433222 24589999
Q ss_pred HHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCcc------Cc-c-ccccchhhhHHH
Q 004456 588 AAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPF------GF-Q-TEFRTLWEATNV 659 (752)
Q Consensus 588 ~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~~------~~-~-~~~~~~~~~~~~ 659 (752)
+++++|.+++++.++++.+.|.|.||.++..++.++|++|.|+|+..|+.|...... .. . .+...+ .....
T Consensus 535 a~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~sd~ee~g~p-~~~~~ 613 (712)
T KOG2237|consen 535 ACAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTSDYEEWGNP-EDFED 613 (712)
T ss_pred HHHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchhhhcccCCh-hhhhh
Confidence 999999999999999999999999999999999999999999999999987432111 00 0 011111 12233
Q ss_pred HHhcChhhhcCCCC-----CCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCC-------CcEEEEEeCCCCccCCccc-cH
Q 004456 660 YIEMSPITHANKIK-----KPILIIHGEVDDKVGLFPMQAERFFDALKGHG-------ALSRLVLLPFEHHVYAARE-NV 726 (752)
Q Consensus 660 ~~~~~~~~~~~~~~-----~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~H~~~~~~-~~ 726 (752)
+..++|...+.+++ +-||+..+.+|.+|+ +.++.++.++|+..- .++-+.+..++||+.-... ..
T Consensus 614 ~~~i~~y~pv~~i~~q~~YPS~lvtta~hD~RV~--~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH~~~~~~~k~ 691 (712)
T KOG2237|consen 614 LIKISPYSPVDNIKKQVQYPSMLVTTADHDDRVG--PLESLKWVAKLREATCDSLKQTNPVLLRIETKAGHGAEKPRFKQ 691 (712)
T ss_pred hheecccCccCCCchhccCcceEEeeccCCCccc--ccchHHHHHHHHHHhhcchhcCCCEEEEEecCCccccCCchHHH
Confidence 33344443333332 568899999999998 999999999998632 3577889999999754222 22
Q ss_pred HHHHHHHHHHHHHHhcC
Q 004456 727 MHVIWETDRWLQKYCLS 743 (752)
Q Consensus 727 ~~~~~~~~~fl~~~l~~ 743 (752)
.+......+||.+.+..
T Consensus 692 ~~E~a~~yaFl~K~~~~ 708 (712)
T KOG2237|consen 692 IEEAAFRYAFLAKMLNS 708 (712)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 34556688999988754
No 23
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=1.9e-21 Score=204.66 Aligned_cols=247 Identities=15% Similarity=0.116 Sum_probs=178.7
Q ss_pred CeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcE-EEEEecCCCCCCCCCccCCCC
Q 004456 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL-LIFTIPSSRRDPPKKTMVPLG 121 (752)
Q Consensus 43 ~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~-l~~~~~~~~~~~~~~~~~~~~ 121 (752)
..|||++.. ......+||++|.+|...++++... . ...+.|||||+. ++|++...
T Consensus 155 ~r~~~v~~~-----~~~~~~~l~~~d~dg~~~~~~~~~~-~-----~~~p~wSpDG~~~i~y~s~~~------------- 210 (419)
T PRK04043 155 KRKVVFSKY-----TGPKKSNIVLADYTLTYQKVIVKGG-L-----NIFPKWANKEQTAFYYTSYGE------------- 210 (419)
T ss_pred eeEEEEEEc-----cCCCcceEEEECCCCCceeEEccCC-C-----eEeEEECCCCCcEEEEEEccC-------------
Confidence 466776541 1123589999999999999888653 1 346799999996 67664321
Q ss_pred CceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCccccCCc-cceeccccCCCCceEEEEecccCcc
Q 004456 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (752)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~ 199 (752)
+..+||++|+ +|+.++++.. +....+.|||||++|+|+.....
T Consensus 211 ---------------------------------~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g-- 255 (419)
T PRK04043 211 ---------------------------------RKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKG-- 255 (419)
T ss_pred ---------------------------------CCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCC--
Confidence 1158999999 6788888866 55667899999999999876532
Q ss_pred ccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEE
Q 004456 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (752)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~ 279 (752)
..+||++++++++.++|+..+... ..+.|||||++ |+|++... ....||
T Consensus 256 --------~~~Iy~~dl~~g~~~~LT~~~~~d-------------~~p~~SPDG~~-I~F~Sdr~---------g~~~Iy 304 (419)
T PRK04043 256 --------QPDIYLYDTNTKTLTQITNYPGID-------------VNGNFVEDDKR-IVFVSDRL---------GYPNIF 304 (419)
T ss_pred --------CcEEEEEECCCCcEEEcccCCCcc-------------CccEECCCCCE-EEEEECCC---------CCceEE
Confidence 258999999999889988776432 24599999999 99987431 233799
Q ss_pred eccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeeccc-----CceeEEEEcCCCCCccceeccccccccccCCCC
Q 004456 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT-----SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPG 354 (752)
Q Consensus 280 ~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~-----~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 354 (752)
++++ ++++.++++..... .+.|||||+.|+|...... ...+||++++++ ++.+.|+.... . .
T Consensus 305 ~~dl---~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~--g~~~~LT~~~~-~-----~ 371 (419)
T PRK04043 305 MKKL---NSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS--DYIRRLTANGV-N-----Q 371 (419)
T ss_pred EEEC---CCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC--CCeEECCCCCC-c-----C
Confidence 9999 67777777653222 3689999999999875331 236899999988 45677876431 1 2
Q ss_pred CCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEee
Q 004456 355 SPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 412 (752)
Q Consensus 355 ~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~ 412 (752)
. ++|||||+.|+|.... +....|+++++++....+|..
T Consensus 372 ~--p~~SPDG~~I~f~~~~------------------~~~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 372 F--PRFSSDGGSIMFIKYL------------------GNQSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred C--eEECCCCCEEEEEEcc------------------CCcEEEEEEecCCCeeEEeec
Confidence 3 4599999999999732 233469999997666666643
No 24
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=2.2e-21 Score=209.22 Aligned_cols=227 Identities=17% Similarity=0.157 Sum_probs=168.6
Q ss_pred eeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccc
Q 004456 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (752)
Q Consensus 6 ~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~ 85 (752)
.|++.+.++ +..++++.. +..+..|+|||||++|||++.. +...+||++++++|+.++++....
T Consensus 180 ~l~~~d~~g----~~~~~l~~~--~~~~~~p~wSpDG~~la~~s~~-------~~~~~l~~~~l~~g~~~~l~~~~g--- 243 (430)
T PRK00178 180 TLQRSDYDG----ARAVTLLQS--REPILSPRWSPDGKRIAYVSFE-------QKRPRIFVQNLDTGRREQITNFEG--- 243 (430)
T ss_pred EEEEECCCC----CCceEEecC--CCceeeeeECCCCCEEEEEEcC-------CCCCEEEEEECCCCCEEEccCCCC---
Confidence 467777766 777888733 3357899999999999998642 345799999999999999976543
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-
Q 004456 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (752)
Q Consensus 86 ~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~- 164 (752)
....+.|||||+.|+|..... ...+||++++
T Consensus 244 --~~~~~~~SpDG~~la~~~~~~----------------------------------------------g~~~Iy~~d~~ 275 (430)
T PRK00178 244 --LNGAPAWSPDGSKLAFVLSKD----------------------------------------------GNPEIYVMDLA 275 (430)
T ss_pred --CcCCeEECCCCCEEEEEEccC----------------------------------------------CCceEEEEECC
Confidence 234689999999999974321 1158999999
Q ss_pred CCCccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCcccc
Q 004456 165 DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG 243 (752)
Q Consensus 165 ~G~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (752)
+|+.++++.. .....+.|||||++|+|.+.... ..+|+++++.+++.++++.....
T Consensus 276 ~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g----------~~~iy~~d~~~g~~~~lt~~~~~------------- 332 (430)
T PRK00178 276 SRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGG----------KPQIYKVNVNGGRAERVTFVGNY------------- 332 (430)
T ss_pred CCCeEEcccCCCCcCCeEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeecCCCC-------------
Confidence 5577888876 55668999999999999875532 14799999988887777633211
Q ss_pred ccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCc
Q 004456 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQ 323 (752)
Q Consensus 244 ~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 323 (752)
...+.|||||+. |+|+...+ ....|+++|+ +++..+.++... ....++|||||+.|+|..... +.
T Consensus 333 ~~~~~~Spdg~~-i~~~~~~~---------~~~~l~~~dl---~tg~~~~lt~~~-~~~~p~~spdg~~i~~~~~~~-g~ 397 (430)
T PRK00178 333 NARPRLSADGKT-LVMVHRQD---------GNFHVAAQDL---QRGSVRILTDTS-LDESPSVAPNGTMLIYATRQQ-GR 397 (430)
T ss_pred ccceEECCCCCE-EEEEEccC---------CceEEEEEEC---CCCCEEEccCCC-CCCCceECCCCCEEEEEEecC-Cc
Confidence 224699999998 88886322 1236889998 666777777543 334689999999999998544 55
Q ss_pred eeEEEEcCCCC
Q 004456 324 TRTWLVCPGSK 334 (752)
Q Consensus 324 ~~l~~~~~~~~ 334 (752)
..|+.+++++.
T Consensus 398 ~~l~~~~~~g~ 408 (430)
T PRK00178 398 GVLMLVSINGR 408 (430)
T ss_pred eEEEEEECCCC
Confidence 78999999773
No 25
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=4.2e-21 Score=207.08 Aligned_cols=252 Identities=15% Similarity=0.166 Sum_probs=180.6
Q ss_pred CCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCCCCCCccCCC
Q 004456 41 DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120 (752)
Q Consensus 41 DG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~ 120 (752)
-..+|||++... ...+..-+||++|.+|+..++++.... .+..+.|||||+.|+|++...
T Consensus 161 f~~~ia~v~~~~---~~~~~~~~l~~~d~~g~~~~~l~~~~~-----~~~~p~wSpDG~~la~~s~~~------------ 220 (430)
T PRK00178 161 FSTRILYVTAER---FSVNTRYTLQRSDYDGARAVTLLQSRE-----PILSPRWSPDGKRIAYVSFEQ------------ 220 (430)
T ss_pred ceeeEEEEEeeC---CCCCcceEEEEECCCCCCceEEecCCC-----ceeeeeECCCCCEEEEEEcCC------------
Confidence 456799987521 111233479999999999999876654 356789999999999985421
Q ss_pred CCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCccccCCc-cceeccccCCCCceEEEEecccCc
Q 004456 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPY 198 (752)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~ 198 (752)
...+||++++ +|+.++++.. +....+.|||||++|+|......
T Consensus 221 ----------------------------------~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g- 265 (430)
T PRK00178 221 ----------------------------------KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG- 265 (430)
T ss_pred ----------------------------------CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC-
Confidence 1158999999 5677788765 55668999999999999765432
Q ss_pred cccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceE
Q 004456 199 SYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDII 278 (752)
Q Consensus 199 ~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l 278 (752)
..+|+++|++++..++++..... ...+.|||||+. |+|.+..+ ....|
T Consensus 266 ---------~~~Iy~~d~~~~~~~~lt~~~~~-------------~~~~~~spDg~~-i~f~s~~~---------g~~~i 313 (430)
T PRK00178 266 ---------NPEIYVMDLASRQLSRVTNHPAI-------------DTEPFWGKDGRT-LYFTSDRG---------GKPQI 313 (430)
T ss_pred ---------CceEEEEECCCCCeEEcccCCCC-------------cCCeEECCCCCE-EEEEECCC---------CCceE
Confidence 14799999999988888765432 335799999998 88886321 22378
Q ss_pred EeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCce
Q 004456 279 YTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMM 358 (752)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~ 358 (752)
|++++ .+++.+.++........++|||||+.|+|..... +..+|+++++.++ +.+.+++... + ..|
T Consensus 314 y~~d~---~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~-~~~~l~~~dl~tg--~~~~lt~~~~-~-----~~p-- 379 (430)
T PRK00178 314 YKVNV---NGGRAERVTFVGNYNARPRLSADGKTLVMVHRQD-GNFHVAAQDLQRG--SVRILTDTSL-D-----ESP-- 379 (430)
T ss_pred EEEEC---CCCCEEEeecCCCCccceEECCCCCEEEEEEccC-CceEEEEEECCCC--CEEEccCCCC-C-----CCc--
Confidence 99988 5667777765444456789999999999987443 4557999999884 5566665321 1 233
Q ss_pred eeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEe
Q 004456 359 TRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 411 (752)
Q Consensus 359 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~ 411 (752)
+|||||++|+|.... .....|+++++.++..+++.
T Consensus 380 ~~spdg~~i~~~~~~------------------~g~~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 380 SVAPNGTMLIYATRQ------------------QGRGVLMLVSINGRVRLPLP 414 (430)
T ss_pred eECCCCCEEEEEEec------------------CCceEEEEEECCCCceEECc
Confidence 499999999999743 23346999998765555554
No 26
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.86 E-value=9e-20 Score=189.69 Aligned_cols=248 Identities=15% Similarity=0.208 Sum_probs=168.8
Q ss_pred CcCCCceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCC
Q 004456 476 TLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR 555 (752)
Q Consensus 476 ~~~~~~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 555 (752)
....+..+...+...+|.++.+..+.|.+.. .+.|+||++||.+.. ..+. +..++..|+++|
T Consensus 26 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~----~~~~~VvllHG~~~~------------~~~~--~~~~~~~L~~~G 87 (330)
T PLN02298 26 ALKGIKGSKSFFTSPRGLSLFTRSWLPSSSS----PPRALIFMVHGYGND------------ISWT--FQSTAIFLAQMG 87 (330)
T ss_pred hccCCccccceEEcCCCCEEEEEEEecCCCC----CCceEEEEEcCCCCC------------ccee--hhHHHHHHHhCC
Confidence 3344566677788889999999999886521 246899999995310 0111 123455788899
Q ss_pred cEEEecCCCCCCCCCCCCCC---chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEE
Q 004456 556 FAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA 632 (752)
Q Consensus 556 ~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~ 632 (752)
|.|++ ++.+|+|.+... ........+|+.++++++......+..+++|+||||||.+++.++.++|++++++|+
T Consensus 88 y~V~~---~D~rGhG~S~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl 164 (330)
T PLN02298 88 FACFA---LDLEGHGRSEGLRAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVL 164 (330)
T ss_pred CEEEE---ecCCCCCCCCCccccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEE
Confidence 99999 666778776432 124567789999999999876444456899999999999999999999999999999
Q ss_pred ccCCCCCCCC---ccC-----------ccc----cccchh------hhHHHHHhcC----------------------hh
Q 004456 633 RSGSYNKTLT---PFG-----------FQT----EFRTLW------EATNVYIEMS----------------------PI 666 (752)
Q Consensus 633 ~~~~~~~~~~---~~~-----------~~~----~~~~~~------~~~~~~~~~~----------------------~~ 666 (752)
++|....... .+. .+. ...... .....+...+ ..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
T PLN02298 165 VAPMCKISDKIRPPWPIPQILTFVARFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLG 244 (330)
T ss_pred ecccccCCcccCCchHHHHHHHHHHHHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHH
Confidence 9886432110 000 000 000000 0000000000 12
Q ss_pred hhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccc---cHHHHHHHHHHHHHHHhcC
Q 004456 667 THANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARE---NVMHVIWETDRWLQKYCLS 743 (752)
Q Consensus 667 ~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~---~~~~~~~~~~~fl~~~l~~ 743 (752)
..+.++++|+||+||++|.++| +..++++++++... ..+++++++++|.....+ ..+.+...+.+||.++++.
T Consensus 245 ~~l~~i~~PvLii~G~~D~ivp--~~~~~~l~~~i~~~--~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~~~ 320 (330)
T PLN02298 245 KKLKDVSIPFIVLHGSADVVTD--PDVSRALYEEAKSE--DKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERCTG 320 (330)
T ss_pred HhhhhcCCCEEEEecCCCCCCC--HHHHHHHHHHhccC--CceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhccC
Confidence 2356788999999999999999 99999888877543 358999999999875322 2356788899999999976
Q ss_pred CCCCC
Q 004456 744 NTSDG 748 (752)
Q Consensus 744 ~~~~~ 748 (752)
...++
T Consensus 321 ~~~~~ 325 (330)
T PLN02298 321 KATPS 325 (330)
T ss_pred CCCCc
Confidence 65443
No 27
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.86 E-value=5.6e-20 Score=196.96 Aligned_cols=228 Identities=17% Similarity=0.126 Sum_probs=161.1
Q ss_pred cceeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCc
Q 004456 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (752)
Q Consensus 4 ~~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~ 83 (752)
...|++++.++ +..++++.. ...+..|+|||||++|||++.. +...+||++++++|+.++++.....
T Consensus 183 ~~~i~i~d~dg----~~~~~lt~~--~~~v~~p~wSPDG~~la~~s~~-------~~~~~i~i~dl~tg~~~~l~~~~g~ 249 (429)
T PRK01742 183 PYEVRVADYDG----FNQFIVNRS--SQPLMSPAWSPDGSKLAYVSFE-------NKKSQLVVHDLRSGARKVVASFRGH 249 (429)
T ss_pred eEEEEEECCCC----CCceEeccC--CCccccceEcCCCCEEEEEEec-------CCCcEEEEEeCCCCceEEEecCCCc
Confidence 35788888777 666777642 2258899999999999998641 3457899999999988888655431
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEc
Q 004456 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (752)
Q Consensus 84 ~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~ 163 (752)
...+.|||||+.|++..... ...+||+++
T Consensus 250 -----~~~~~wSPDG~~La~~~~~~----------------------------------------------g~~~Iy~~d 278 (429)
T PRK01742 250 -----NGAPAFSPDGSRLAFASSKD----------------------------------------------GVLNIYVMG 278 (429)
T ss_pred -----cCceeECCCCCEEEEEEecC----------------------------------------------CcEEEEEEE
Confidence 34679999999999974311 114799999
Q ss_pred c-CCCccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCcc
Q 004456 164 L-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (752)
Q Consensus 164 ~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (752)
+ .|+.++++.. .....+.|||||++|+|.+.... ..+||.++..++..+.+... .
T Consensus 279 ~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g----------~~~I~~~~~~~~~~~~l~~~-~------------ 335 (429)
T PRK01742 279 ANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSG----------SPQVYRMSASGGGASLVGGR-G------------ 335 (429)
T ss_pred CCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEecCC-C------------
Confidence 9 4578888876 66779999999999999875432 13788888877765554211 0
Q ss_pred ccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeeccc
Q 004456 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (752)
Q Consensus 242 ~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~ 321 (752)
..+.|||||+. |++... +.++++|+ .++..+.++.. .....++|||||+.|+|++...
T Consensus 336 ---~~~~~SpDG~~-ia~~~~-------------~~i~~~Dl---~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g- 393 (429)
T PRK01742 336 ---YSAQISADGKT-LVMING-------------DNVVKQDL---TSGSTEVLSST-FLDESPSISPNGIMIIYSSTQG- 393 (429)
T ss_pred ---CCccCCCCCCE-EEEEcC-------------CCEEEEEC---CCCCeEEecCC-CCCCCceECCCCCEEEEEEcCC-
Confidence 13589999998 777742 25677887 55555555533 2346789999999999988533
Q ss_pred CceeEEEEcCCCCCccceecc
Q 004456 322 SQTRTWLVCPGSKDVAPRVLF 342 (752)
Q Consensus 322 ~~~~l~~~~~~~~~~~~~~l~ 342 (752)
....++++++++ ...+.+.
T Consensus 394 ~~~~l~~~~~~G--~~~~~l~ 412 (429)
T PRK01742 394 LGKVLQLVSADG--RFKARLP 412 (429)
T ss_pred CceEEEEEECCC--CceEEcc
Confidence 445567777766 3345554
No 28
>PRK10566 esterase; Provisional
Probab=99.86 E-value=7.3e-20 Score=182.50 Aligned_cols=219 Identities=19% Similarity=0.248 Sum_probs=145.3
Q ss_pred EEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCC
Q 004456 494 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKL 573 (752)
Q Consensus 494 ~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~ 573 (752)
.+..+++.|.+. .+++.|+||++||.+... . .+...+..|+++||+|+++++ +|+|.+.
T Consensus 11 ~~~~~~~~p~~~---~~~~~p~vv~~HG~~~~~-----------~----~~~~~~~~l~~~G~~v~~~d~---~g~G~~~ 69 (249)
T PRK10566 11 GIEVLHAFPAGQ---RDTPLPTVFFYHGFTSSK-----------L----VYSYFAVALAQAGFRVIMPDA---PMHGARF 69 (249)
T ss_pred CcceEEEcCCCC---CCCCCCEEEEeCCCCccc-----------c----hHHHHHHHHHhCCCEEEEecC---CcccccC
Confidence 455677778641 123579999999963210 1 122467788999999999554 4554331
Q ss_pred CCc------h---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccC--CCCCC--
Q 004456 574 PND------R---FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG--SYNKT-- 640 (752)
Q Consensus 574 ~~~------~---~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~--~~~~~-- 640 (752)
.+. . ......+|+.++++++.++..+|.+||+++||||||++++.++.+.|+. ++++.+.+ .....
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~-~~~~~~~~~~~~~~~~~ 148 (249)
T PRK10566 70 SGDEARRLNHFWQILLQNMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWV-KCVASLMGSGYFTSLAR 148 (249)
T ss_pred CCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCe-eEEEEeeCcHHHHHHHH
Confidence 110 1 1123467888889999988888999999999999999999999988764 44443332 11100
Q ss_pred -CCccCcc-cc--ccchhhhHHHHHhcChhhhcCCC-CCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCC--cEEEEEe
Q 004456 641 -LTPFGFQ-TE--FRTLWEATNVYIEMSPITHANKI-KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGA--LSRLVLL 713 (752)
Q Consensus 641 -~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~-~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~--~~~~~~~ 713 (752)
..+.... .. ..........+...++...+.++ ++|+|++||++|.+|| +.+++++++++...|. +++++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~--~~~~~~l~~~l~~~g~~~~~~~~~~ 226 (249)
T PRK10566 149 TLFPPLIPETAAQQAEFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVP--AAESLRLQQALRERGLDKNLTCLWE 226 (249)
T ss_pred HhcccccccccccHHHHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCC--HHHHHHHHHHHHhcCCCcceEEEec
Confidence 0000000 00 00011111122334444555665 6999999999999999 9999999999998876 4789999
Q ss_pred CCCCccCCccccHHHHHHHHHHHHHHHh
Q 004456 714 PFEHHVYAARENVMHVIWETDRWLQKYC 741 (752)
Q Consensus 714 ~~~~H~~~~~~~~~~~~~~~~~fl~~~l 741 (752)
++++|.+. ...+..+.+||+++|
T Consensus 227 ~~~~H~~~-----~~~~~~~~~fl~~~~ 249 (249)
T PRK10566 227 PGVRHRIT-----PEALDAGVAFFRQHL 249 (249)
T ss_pred CCCCCccC-----HHHHHHHHHHHHhhC
Confidence 99999864 356889999999875
No 29
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.86 E-value=8.2e-20 Score=195.68 Aligned_cols=243 Identities=20% Similarity=0.161 Sum_probs=167.1
Q ss_pred CCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCC
Q 004456 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (752)
Q Consensus 42 G~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~ 121 (752)
+++|||++... ......+||++|.+|...+++|.+.. .+..+.|||||+.|+|++...
T Consensus 168 ~~ria~v~~~~----~~~~~~~i~i~d~dg~~~~~lt~~~~-----~v~~p~wSPDG~~la~~s~~~------------- 225 (429)
T PRK01742 168 RTRIAYVVQKN----GGSQPYEVRVADYDGFNQFIVNRSSQ-----PLMSPAWSPDGSKLAYVSFEN------------- 225 (429)
T ss_pred CCEEEEEEEEc----CCCceEEEEEECCCCCCceEeccCCC-----ccccceEcCCCCEEEEEEecC-------------
Confidence 68999987621 11334799999999988888886654 356889999999999985421
Q ss_pred CceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCccccCCc-cceeccccCCCCceEEEEecccCcc
Q 004456 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (752)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~ 199 (752)
...+||++++ +|+.+.++.. +....++|||||++|++......
T Consensus 226 ---------------------------------~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g-- 270 (429)
T PRK01742 226 ---------------------------------KKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDG-- 270 (429)
T ss_pred ---------------------------------CCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCC--
Confidence 1158999999 5666666544 45568999999999999864321
Q ss_pred ccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEE
Q 004456 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (752)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~ 279 (752)
..+||++|+++++.++++..... ...+.|||||+. |+|++..+ ....||
T Consensus 271 --------~~~Iy~~d~~~~~~~~lt~~~~~-------------~~~~~wSpDG~~-i~f~s~~~---------g~~~I~ 319 (429)
T PRK01742 271 --------VLNIYVMGANGGTPSQLTSGAGN-------------NTEPSWSPDGQS-ILFTSDRS---------GSPQVY 319 (429)
T ss_pred --------cEEEEEEECCCCCeEeeccCCCC-------------cCCEEECCCCCE-EEEEECCC---------CCceEE
Confidence 13689999998888887765432 446799999998 88876322 223788
Q ss_pred eccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCcee
Q 004456 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 359 (752)
Q Consensus 280 ~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~ 359 (752)
.++. .++..+.+. ... ..++|||||+.|++... ..++++|+.++ ....++... .. .. .+
T Consensus 320 ~~~~---~~~~~~~l~-~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g--~~~~lt~~~-~~-----~~--~~ 378 (429)
T PRK01742 320 RMSA---SGGGASLVG-GRG--YSAQISADGKTLVMING-----DNVVKQDLTSG--STEVLSSTF-LD-----ES--PS 378 (429)
T ss_pred EEEC---CCCCeEEec-CCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCC--CeEEecCCC-CC-----CC--ce
Confidence 8887 455555443 222 45789999999999763 24888998874 334444321 11 22 44
Q ss_pred eCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEe
Q 004456 360 RTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 411 (752)
Q Consensus 360 ~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~ 411 (752)
|||||++|++.+.+ +....+++++.+++..++|.
T Consensus 379 ~sPdG~~i~~~s~~------------------g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 379 ISPNGIMIIYSSTQ------------------GLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred ECCCCCEEEEEEcC------------------CCceEEEEEECCCCceEEcc
Confidence 89999999998732 22224667776555556564
No 30
>PRK13604 luxD acyl transferase; Provisional
Probab=99.85 E-value=1e-19 Score=177.94 Aligned_cols=211 Identities=12% Similarity=0.038 Sum_probs=145.2
Q ss_pred ceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEe
Q 004456 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (752)
Q Consensus 481 ~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~ 560 (752)
.+....+...+|..|.+|+..|++.. ..+.++||++||.+.. . ..+..++..|+++||+|+.
T Consensus 8 ~~~~~~~~~~dG~~L~Gwl~~P~~~~---~~~~~~vIi~HGf~~~------------~---~~~~~~A~~La~~G~~vLr 69 (307)
T PRK13604 8 KTIDHVICLENGQSIRVWETLPKENS---PKKNNTILIASGFARR------------M---DHFAGLAEYLSSNGFHVIR 69 (307)
T ss_pred cchhheEEcCCCCEEEEEEEcCcccC---CCCCCEEEEeCCCCCC------------h---HHHHHHHHHHHHCCCEEEE
Confidence 34555677789999999999997522 2357999999995311 1 1134678899999999999
Q ss_pred cCCCCCCCC-CCCCCC--chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCC
Q 004456 561 GPSIPIIGE-GDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (752)
Q Consensus 561 ~~~~~~~g~-g~~~~~--~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~ 637 (752)
. |.+|. |++... .........|+.++++|++++. .++|+|+||||||.+++.+|... .++++|+.||+.
T Consensus 70 f---D~rg~~GeS~G~~~~~t~s~g~~Dl~aaid~lk~~~---~~~I~LiG~SmGgava~~~A~~~--~v~~lI~~sp~~ 141 (307)
T PRK13604 70 Y---DSLHHVGLSSGTIDEFTMSIGKNSLLTVVDWLNTRG---INNLGLIAASLSARIAYEVINEI--DLSFLITAVGVV 141 (307)
T ss_pred e---cCCCCCCCCCCccccCcccccHHHHHHHHHHHHhcC---CCceEEEEECHHHHHHHHHhcCC--CCCEEEEcCCcc
Confidence 4 44443 444221 1122334789999999998863 46899999999999987666643 489999999997
Q ss_pred CCCC------Cc-c---Cccc--c-----ccc----hh-hhHHH---HHhcChhhhcCCCCCCEEEEEeCCCCCCCCCHH
Q 004456 638 NKTL------TP-F---GFQT--E-----FRT----LW-EATNV---YIEMSPITHANKIKKPILIIHGEVDDKVGLFPM 692 (752)
Q Consensus 638 ~~~~------~~-~---~~~~--~-----~~~----~~-~~~~~---~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~ 692 (752)
+... .. + .+.. . ... .+ ..... ....+|...+.+++.|+|++||+.|..|| +.
T Consensus 142 ~l~d~l~~~~~~~~~~~p~~~lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l~~PvLiIHG~~D~lVp--~~ 219 (307)
T PRK13604 142 NLRDTLERALGYDYLSLPIDELPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGLDIPFIAFTANNDSWVK--QS 219 (307)
T ss_pred cHHHHHHHhhhcccccCcccccccccccccccccHHHHHHHHHhcCccccccHHHHHhhcCCCEEEEEcCCCCccC--HH
Confidence 7220 00 0 0000 0 000 00 00000 11235557778889999999999999999 99
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 004456 693 QAERFFDALKGHGALSRLVLLPFEHHVYA 721 (752)
Q Consensus 693 ~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 721 (752)
++++++++++. .+++++++||++|.+.
T Consensus 220 ~s~~l~e~~~s--~~kkl~~i~Ga~H~l~ 246 (307)
T PRK13604 220 EVIDLLDSIRS--EQCKLYSLIGSSHDLG 246 (307)
T ss_pred HHHHHHHHhcc--CCcEEEEeCCCccccC
Confidence 99999998654 3568999999999876
No 31
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.85 E-value=1.5e-19 Score=190.67 Aligned_cols=232 Identities=18% Similarity=0.147 Sum_probs=155.2
Q ss_pred cCCCceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCc
Q 004456 477 LASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF 556 (752)
Q Consensus 477 ~~~~~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~ 556 (752)
......+.++|+..+|..+.+++++|+. .++.|+||+.||.+.. .......++..|+++||
T Consensus 163 ~~~~~~e~v~i~~~~g~~l~g~l~~P~~-----~~~~P~Vli~gG~~~~--------------~~~~~~~~~~~La~~Gy 223 (414)
T PRK05077 163 RLPGELKELEFPIPGGGPITGFLHLPKG-----DGPFPTVLVCGGLDSL--------------QTDYYRLFRDYLAPRGI 223 (414)
T ss_pred hcCCceEEEEEEcCCCcEEEEEEEECCC-----CCCccEEEEeCCcccc--------------hhhhHHHHHHHHHhCCC
Confidence 3445689999998888899999999974 2358998877763210 01112235668899999
Q ss_pred EEEecCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004456 557 AVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (752)
Q Consensus 557 ~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~ 636 (752)
+|++ ++.+|+|.+.... ..........++++++.+.+.+|.+||+++||||||++++.++..+|++++++|+++|.
T Consensus 224 ~vl~---~D~pG~G~s~~~~-~~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~ 299 (414)
T PRK05077 224 AMLT---IDMPSVGFSSKWK-LTQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPV 299 (414)
T ss_pred EEEE---ECCCCCCCCCCCC-ccccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCc
Confidence 9999 5555666553211 11112222357889999998899999999999999999999999998899999999987
Q ss_pred CCCCCCccCc----cccc--------cchhhhHH----HHHhcCh--hhh-cCCCCCCEEEEEeCCCCCCCCCHHHHHHH
Q 004456 637 YNKTLTPFGF----QTEF--------RTLWEATN----VYIEMSP--ITH-ANKIKKPILIIHGEVDDKVGLFPMQAERF 697 (752)
Q Consensus 637 ~~~~~~~~~~----~~~~--------~~~~~~~~----~~~~~~~--~~~-~~~~~~P~li~~G~~D~~v~~~~~~~~~~ 697 (752)
.+........ +... .......+ .+...+. ... ..++++|+|++||++|.++| +.+++.+
T Consensus 300 ~~~~~~~~~~~~~~p~~~~~~la~~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP--~~~a~~l 377 (414)
T PRK05077 300 VHTLLTDPKRQQQVPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSP--EEDSRLI 377 (414)
T ss_pred cchhhcchhhhhhchHHHHHHHHHHhCCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCC--HHHHHHH
Confidence 6421111000 0000 00000111 1111111 001 24688999999999999999 8888766
Q ss_pred HHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHHHHh
Q 004456 698 FDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 741 (752)
Q Consensus 698 ~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 741 (752)
.+.. ...+++++|++ |. .+.+..+...+.+||.++|
T Consensus 378 ~~~~----~~~~l~~i~~~-~~---~e~~~~~~~~i~~wL~~~l 413 (414)
T PRK05077 378 ASSS----ADGKLLEIPFK-PV---YRNFDKALQEISDWLEDRL 413 (414)
T ss_pred HHhC----CCCeEEEccCC-Cc---cCCHHHHHHHHHHHHHHHh
Confidence 5443 34578999987 33 3467899999999999986
No 32
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.83 E-value=7.5e-19 Score=183.79 Aligned_cols=236 Identities=14% Similarity=0.148 Sum_probs=159.3
Q ss_pred CceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCC-chhHHHHHhCCcEE
Q 004456 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT-PTSSLIFLARRFAV 558 (752)
Q Consensus 480 ~~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~G~~v 558 (752)
+..+...+.+.+|.++.+..+.|++ ..+.|+||++||.+. ....+ ...+..|+++||.|
T Consensus 59 ~~~~~~~~~~~~g~~l~~~~~~p~~-----~~~~~~iv~lHG~~~---------------~~~~~~~~~~~~l~~~g~~v 118 (349)
T PLN02385 59 IKTEESYEVNSRGVEIFSKSWLPEN-----SRPKAAVCFCHGYGD---------------TCTFFFEGIARKIASSGYGV 118 (349)
T ss_pred cceeeeeEEcCCCCEEEEEEEecCC-----CCCCeEEEEECCCCC---------------ccchHHHHHHHHHHhCCCEE
Confidence 3344445566789999999999864 224699999999531 11111 23456788899999
Q ss_pred EecCCCCCCCCCCCCCCc---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccC
Q 004456 559 LAGPSIPIIGEGDKLPND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635 (752)
Q Consensus 559 ~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~ 635 (752)
++ .+.+|+|.+.... ......++|+.+.++.+......+..+++|+||||||++++.++.++|++++++|+++|
T Consensus 119 ~~---~D~~G~G~S~~~~~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p 195 (349)
T PLN02385 119 FA---MDYPGFGLSEGLHGYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAP 195 (349)
T ss_pred EE---ecCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecc
Confidence 99 5667787765331 23566788888888888765444556899999999999999999999999999999998
Q ss_pred CCCCCC--Cc-c-----------------Cccc-c-ccchhhh-----------------------HHHHHh-cChhhhc
Q 004456 636 SYNKTL--TP-F-----------------GFQT-E-FRTLWEA-----------------------TNVYIE-MSPITHA 669 (752)
Q Consensus 636 ~~~~~~--~~-~-----------------~~~~-~-~~~~~~~-----------------------~~~~~~-~~~~~~~ 669 (752)
...... .+ . .... . ....+.. ...+.. ......+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 275 (349)
T PLN02385 196 MCKIADDVVPPPLVLQILILLANLLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQL 275 (349)
T ss_pred cccccccccCchHHHHHHHHHHHHCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhc
Confidence 643110 00 0 0000 0 0000000 000000 0112235
Q ss_pred CCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCcccc---HHHHHHHHHHHHHHHhc
Q 004456 670 NKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAREN---VMHVIWETDRWLQKYCL 742 (752)
Q Consensus 670 ~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~---~~~~~~~~~~fl~~~l~ 742 (752)
.++++|+|++||++|.++| +..++.+++.+.. ...+++++|+++|.+...+. .+.++..+.+||++++.
T Consensus 276 ~~i~~P~Lii~G~~D~vv~--~~~~~~l~~~~~~--~~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~~ 347 (349)
T PLN02385 276 EEVSLPLLILHGEADKVTD--PSVSKFLYEKASS--SDKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHST 347 (349)
T ss_pred ccCCCCEEEEEeCCCCccC--hHHHHHHHHHcCC--CCceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhcc
Confidence 6789999999999999998 8888888876643 24589999999998763322 33588899999999874
No 33
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.83 E-value=1.1e-19 Score=176.45 Aligned_cols=201 Identities=23% Similarity=0.246 Sum_probs=141.2
Q ss_pred EEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCC
Q 004456 495 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP 574 (752)
Q Consensus 495 ~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~ 574 (752)
+.+++..|++ .++.|.||++|+.. ++.......+..|+++||.|++++.+...+......
T Consensus 1 ~~ay~~~P~~-----~~~~~~Vvv~~d~~---------------G~~~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~ 60 (218)
T PF01738_consen 1 IDAYVARPEG-----GGPRPAVVVIHDIF---------------GLNPNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDP 60 (218)
T ss_dssp EEEEEEEETT-----SSSEEEEEEE-BTT---------------BS-HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCH
T ss_pred CeEEEEeCCC-----CCCCCEEEEEcCCC---------------CCchHHHHHHHHHHhcCCCEEecccccCCCCCccch
Confidence 5789999987 24689999999841 122222346789999999999988765555101111
Q ss_pred C--chh--------HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCcc
Q 004456 575 N--DRF--------VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPF 644 (752)
Q Consensus 575 ~--~~~--------~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~~ 644 (752)
. ... ......|+.+++++|+++..++..||+++|+|+||.+++.++.+. ..++++|.+.|... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~-----~ 134 (218)
T PF01738_consen 61 EEAFAAMRELFAPRPEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSP-----P 134 (218)
T ss_dssp HCHHHHHHHCHHHSHHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSS-----G
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCC-----C
Confidence 1 011 234568888999999999878889999999999999999988887 67899999888100 0
Q ss_pred CccccccchhhhHHHHHhcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccc
Q 004456 645 GFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARE 724 (752)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~ 724 (752)
..+.....++++|+|+++|++|+.+| .+...++.++|++.+.++++++||+++|+|....
T Consensus 135 ------------------~~~~~~~~~~~~P~l~~~g~~D~~~~--~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~ 194 (218)
T PF01738_consen 135 ------------------PPPLEDAPKIKAPVLILFGENDPFFP--PEEVEALEEALKAAGVDVEVHVYPGAGHGFANPS 194 (218)
T ss_dssp ------------------GGHHHHGGG--S-EEEEEETT-TTS---HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTT
T ss_pred ------------------CcchhhhcccCCCEeecCccCCCCCC--hHHHHHHHHHHHhcCCcEEEEECCCCcccccCCC
Confidence 01223356678999999999999998 8889999999999999999999999999987543
Q ss_pred c-------HHHHHHHHHHHHHHHh
Q 004456 725 N-------VMHVIWETDRWLQKYC 741 (752)
Q Consensus 725 ~-------~~~~~~~~~~fl~~~l 741 (752)
. .++..+.+++||++||
T Consensus 195 ~~~~~~~aa~~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 195 RPPYDPAAAEDAWQRTLAFFKRHL 218 (218)
T ss_dssp STT--HHHHHHHHHHHHHHHCC--
T ss_pred CcccCHHHHHHHHHHHHHHHHhcC
Confidence 2 3567888999999886
No 34
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.83 E-value=5.7e-19 Score=166.57 Aligned_cols=236 Identities=18% Similarity=0.193 Sum_probs=168.8
Q ss_pred CceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEE
Q 004456 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (752)
Q Consensus 480 ~~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (752)
+....-.+.+.+|..+....|+|... ..+..+|+++||.+.. .+..+...+..|+..||.|+
T Consensus 25 ~~~~~~~~~n~rG~~lft~~W~p~~~----~~pr~lv~~~HG~g~~--------------~s~~~~~~a~~l~~~g~~v~ 86 (313)
T KOG1455|consen 25 VTYSESFFTNPRGAKLFTQSWLPLSG----TEPRGLVFLCHGYGEH--------------SSWRYQSTAKRLAKSGFAVY 86 (313)
T ss_pred cceeeeeEEcCCCCEeEEEecccCCC----CCCceEEEEEcCCccc--------------chhhHHHHHHHHHhCCCeEE
Confidence 34555566778999999999999652 2457899999996421 11222346789999999999
Q ss_pred ecCCCCCCCCCCCCCCc---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004456 560 AGPSIPIIGEGDKLPND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (752)
Q Consensus 560 ~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~ 636 (752)
+ ++..|+|.+.... ..+...+.|+..-++.++.+..-..-..+++||||||.+++.++.++|+...++|+++|+
T Consensus 87 a---~D~~GhG~SdGl~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPm 163 (313)
T KOG1455|consen 87 A---IDYEGHGRSDGLHAYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPM 163 (313)
T ss_pred E---eeccCCCcCCCCcccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecc
Confidence 9 6677888776543 345677888888888887775544567999999999999999999999999999999987
Q ss_pred CCCCC------------------Cc-cC-cccc------ccchhhhH-------------------HHHH-hcChhhhcC
Q 004456 637 YNKTL------------------TP-FG-FQTE------FRTLWEAT-------------------NVYI-EMSPITHAN 670 (752)
Q Consensus 637 ~~~~~------------------~~-~~-~~~~------~~~~~~~~-------------------~~~~-~~~~~~~~~ 670 (752)
+...- .+ +. .+.. ...++... +.++ ......++.
T Consensus 164 c~i~~~~kp~p~v~~~l~~l~~liP~wk~vp~~d~~~~~~kdp~~r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~ 243 (313)
T KOG1455|consen 164 CKISEDTKPHPPVISILTLLSKLIPTWKIVPTKDIIDVAFKDPEKRKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLN 243 (313)
T ss_pred cccCCccCCCcHHHHHHHHHHHhCCceeecCCccccccccCCHHHHHHhhcCCceecCCccHHHHHHHHHHHHHHHHhcc
Confidence 53110 00 00 0000 01111100 0010 011223567
Q ss_pred CCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCC---ccccHHHHHHHHHHHHHHH
Q 004456 671 KIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYA---ARENVMHVIWETDRWLQKY 740 (752)
Q Consensus 671 ~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~---~~~~~~~~~~~~~~fl~~~ 740 (752)
++..|+||+||++|.++. +.-++++++..... +.++.+|||+-|.+. ..++.+.++..|++||+++
T Consensus 244 ~vtvPflilHG~dD~VTD--p~~Sk~Lye~A~S~--DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 244 EVTVPFLILHGTDDKVTD--PKVSKELYEKASSS--DKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred cccccEEEEecCCCcccC--cHHHHHHHHhccCC--CCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 889999999999999987 99999999987665 447999999999876 3466788999999999876
No 35
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.83 E-value=1.5e-18 Score=180.81 Aligned_cols=303 Identities=17% Similarity=0.176 Sum_probs=198.3
Q ss_pred cCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCCCCCCccC
Q 004456 39 SPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMV 118 (752)
Q Consensus 39 SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~ 118 (752)
||||+++++..+..+.-+ .+...++||+++++++.++|+.... ....+.|||||+.|+|+..
T Consensus 1 S~d~~~~l~~~~~~~~~r-~s~~~~y~i~d~~~~~~~~l~~~~~-----~~~~~~~sP~g~~~~~v~~------------ 62 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWR-HSFKGDYYIYDIETGEITPLTPPPP-----KLQDAKWSPDGKYIAFVRD------------ 62 (353)
T ss_dssp -TTSSEEEEEEEEEEESS-SEEEEEEEEEETTTTEEEESS-EET-----TBSEEEE-SSSTEEEEEET------------
T ss_pred CCCCCeEEEEECcEEeee-eccceeEEEEecCCCceEECcCCcc-----ccccceeecCCCeeEEEec------------
Confidence 899999999877332222 3556899999999999999976522 3567899999999999832
Q ss_pred CCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCccccCCcc-------------------cee
Q 004456 119 PLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA-------------------VYT 178 (752)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~~l~~~~-------------------~~~ 178 (752)
..||+.++ +++.++||..+ ...
T Consensus 63 --------------------------------------~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~ 104 (353)
T PF00930_consen 63 --------------------------------------NNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRS 104 (353)
T ss_dssp --------------------------------------TEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSB
T ss_pred --------------------------------------CceEEEECCCCCeEEeccccceeEEcCccceecccccccccc
Confidence 57898888 56777776532 234
Q ss_pred ccccCCCCceEEEEecccCccccc--c-------------ccCc--------cccEEEEecCCceeEEecCCCCCCCCCc
Q 004456 179 AVEPSPDQKYVLITSMHRPYSYKV--P-------------CARF--------SQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (752)
Q Consensus 179 ~~~~SpDGk~l~~~~~~~~~~~~~--~-------------~~~~--------~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 235 (752)
.+.|||||++|+|.+.+...-... + ...+ .-+++++++.+++...+....
T Consensus 105 ~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~------- 177 (353)
T PF00930_consen 105 AVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPN------- 177 (353)
T ss_dssp SEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---H-------
T ss_pred ceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecc-------
Confidence 778999999999998765211000 0 0001 135677788777654333221
Q ss_pred ccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeeccc--c---eeeeeee-cC
Q 004456 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL--R---FRSVSWC-DD 309 (752)
Q Consensus 236 ~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~--~---~~~~~~s-pD 309 (752)
.+......+..+.|++|++. |++.... +.+..-.++++|+ .++..+.+..... - ...+.|. ++
T Consensus 178 ~~~~~~~yl~~v~W~~d~~~-l~~~~~n-------R~q~~~~l~~~d~---~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~ 246 (353)
T PF00930_consen 178 SLNPQDYYLTRVGWSPDGKR-LWVQWLN-------RDQNRLDLVLCDA---STGETRVVLEETSDGWVDVYDPPHFLGPD 246 (353)
T ss_dssp HHHTSSEEEEEEEEEETTEE-EEEEEEE-------TTSTEEEEEEEEE---CTTTCEEEEEEESSSSSSSSSEEEE-TTT
T ss_pred ccCCCccCcccceecCCCcE-EEEEEcc-------cCCCEEEEEEEEC---CCCceeEEEEecCCcceeeecccccccCC
Confidence 00111233568999999995 4444322 2234446777787 4455555432221 1 2345555 89
Q ss_pred CceEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCC
Q 004456 310 SLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFT 389 (752)
Q Consensus 310 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~ 389 (752)
+..+++.+. ..+..+||.++.++ +..+.||.+...-. -.+.|+++++.|+|.+...
T Consensus 247 ~~~~l~~s~-~~G~~hly~~~~~~--~~~~~lT~G~~~V~------~i~~~d~~~~~iyf~a~~~--------------- 302 (353)
T PF00930_consen 247 GNEFLWISE-RDGYRHLYLYDLDG--GKPRQLTSGDWEVT------SILGWDEDNNRIYFTANGD--------------- 302 (353)
T ss_dssp SSEEEEEEE-TTSSEEEEEEETTS--SEEEESS-SSS-EE------EEEEEECTSSEEEEEESSG---------------
T ss_pred CCEEEEEEE-cCCCcEEEEEcccc--cceeccccCceeec------ccceEcCCCCEEEEEecCC---------------
Confidence 999999887 55789999999998 45678887664321 1256899999999998431
Q ss_pred CCCCCCeeEEEecC-CCceeEEeeccchhhhhceeeeecCCcceecccCCCEEEEEEecCCCCc
Q 004456 390 PEGNIPFLDLFDIN-TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEIT 452 (752)
Q Consensus 390 ~~~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~ 452 (752)
.....+||+++++ +++.+.|+..... + ..++||||+++++.+++++..|+
T Consensus 303 -~p~~r~lY~v~~~~~~~~~~LT~~~~~-------~-----~~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 303 -NPGERHLYRVSLDSGGEPKCLTCEDGD-------H-----YSASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp -GTTSBEEEEEETTETTEEEESSTTSST-------T-----EEEEE-TTSSEEEEEEESSSSCE
T ss_pred -CCCceEEEEEEeCCCCCeEeccCCCCC-------c-----eEEEECCCCCEEEEEEcCCCCCC
Confidence 2457799999999 8999999877654 0 24689999999999999988774
No 36
>PHA02857 monoglyceride lipase; Provisional
Probab=99.82 E-value=1.7e-18 Score=175.54 Aligned_cols=221 Identities=18% Similarity=0.145 Sum_probs=152.8
Q ss_pred cCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCC
Q 004456 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 568 (752)
Q Consensus 489 ~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g 568 (752)
+.+|..+.+.+|.|.. .+.|+|+++||.+. ....+...+..|+++||.|++ .+.+|
T Consensus 7 ~~~g~~l~~~~~~~~~------~~~~~v~llHG~~~---------------~~~~~~~~~~~l~~~g~~via---~D~~G 62 (276)
T PHA02857 7 NLDNDYIYCKYWKPIT------YPKALVFISHGAGE---------------HSGRYEELAENISSLGILVFS---HDHIG 62 (276)
T ss_pred cCCCCEEEEEeccCCC------CCCEEEEEeCCCcc---------------ccchHHHHHHHHHhCCCEEEE---ccCCC
Confidence 4588999999998852 13689999999531 122233567788899999999 66778
Q ss_pred CCCCCCCc---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCcc-
Q 004456 569 EGDKLPND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPF- 644 (752)
Q Consensus 569 ~g~~~~~~---~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~~- 644 (752)
+|.+.... ......++|+.+.++++++.. ...+++|+||||||.+|+.++.++|++++++|+++|..+......
T Consensus 63 ~G~S~~~~~~~~~~~~~~~d~~~~l~~~~~~~--~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~ 140 (276)
T PHA02857 63 HGRSNGEKMMIDDFGVYVRDVVQHVVTIKSTY--PGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRL 140 (276)
T ss_pred CCCCCCccCCcCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccccHH
Confidence 88764321 234556788888888876542 246899999999999999999999999999999998754211000
Q ss_pred ----------Ccccc----ccchh-----hhHHHH-------------------Hh--cChhhhcCCCCCCEEEEEeCCC
Q 004456 645 ----------GFQTE----FRTLW-----EATNVY-------------------IE--MSPITHANKIKKPILIIHGEVD 684 (752)
Q Consensus 645 ----------~~~~~----~~~~~-----~~~~~~-------------------~~--~~~~~~~~~~~~P~li~~G~~D 684 (752)
..... ....+ .....+ .. ......+.++++|+|+++|++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvliv~G~~D 220 (276)
T PHA02857 141 NLLAAKLMGIFYPNKIVGKLCPESVSRDMDEVYKYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPKIKTPILILQGTNN 220 (276)
T ss_pred HHHHHHHHHHhCCCCccCCCCHhhccCCHHHHHHHhcCCCccCCCccHHHHHHHHHHHHHHHHhcccCCCCEEEEecCCC
Confidence 00000 00000 000000 00 0112345678999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccc--cHHHHHHHHHHHHHHH
Q 004456 685 DKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARE--NVMHVIWETDRWLQKY 740 (752)
Q Consensus 685 ~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~--~~~~~~~~~~~fl~~~ 740 (752)
.++| +..+.++.+.+.. .++++++++++|...... ..+++++.+.+||+++
T Consensus 221 ~i~~--~~~~~~l~~~~~~---~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 221 EISD--VSGAYYFMQHANC---NREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred CcCC--hHHHHHHHHHccC---CceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 9998 8888888776533 468999999999877553 3678999999999986
No 37
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.81 E-value=3.2e-18 Score=184.75 Aligned_cols=227 Identities=19% Similarity=0.199 Sum_probs=164.7
Q ss_pred ceeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCcc
Q 004456 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (752)
Q Consensus 5 ~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~ 84 (752)
..|++++.++ +..++++.... ....|+|||||++|||+... .+..+||++++++++.++++....
T Consensus 170 ~~l~~~d~~g----~~~~~l~~~~~--~~~~p~~Spdg~~la~~~~~-------~~~~~i~v~d~~~g~~~~~~~~~~-- 234 (417)
T TIGR02800 170 YELQVADYDG----ANPQTITRSRE--PILSPAWSPDGQKLAYVSFE-------SGKPEIYVQDLATGQREKVASFPG-- 234 (417)
T ss_pred ceEEEEcCCC----CCCEEeecCCC--ceecccCCCCCCEEEEEEcC-------CCCcEEEEEECCCCCEEEeecCCC--
Confidence 3578888766 77888874322 47789999999999998642 344789999999998888765443
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc
Q 004456 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (752)
Q Consensus 85 ~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~ 164 (752)
....+.|||||+.|+|..... ...+||.+++
T Consensus 235 ---~~~~~~~spDg~~l~~~~~~~----------------------------------------------~~~~i~~~d~ 265 (417)
T TIGR02800 235 ---MNGAPAFSPDGSKLAVSLSKD----------------------------------------------GNPDIYVMDL 265 (417)
T ss_pred ---CccceEECCCCCEEEEEECCC----------------------------------------------CCccEEEEEC
Confidence 234679999999999874311 1157999999
Q ss_pred -CCCccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccc
Q 004456 165 -DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (752)
Q Consensus 165 -~G~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (752)
++..++++.. .....+.|+|||++|+|.+.... ..+|+++++.+++.++++.....
T Consensus 266 ~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g----------~~~iy~~d~~~~~~~~l~~~~~~------------ 323 (417)
T TIGR02800 266 DGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG----------SPQIYMMDADGGEVRRLTFRGGY------------ 323 (417)
T ss_pred CCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeecCCCC------------
Confidence 5577777766 44557899999999999876532 13799999988877776644322
Q ss_pred cccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccC
Q 004456 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (752)
Q Consensus 243 ~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~ 322 (752)
...+.|||||+. |+++.... .+..|+++++ .++..+.++.. .....++|||||+.|+|..... +
T Consensus 324 -~~~~~~spdg~~-i~~~~~~~---------~~~~i~~~d~---~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~-~ 387 (417)
T TIGR02800 324 -NASPSWSPDGDL-IAFVHREG---------GGFNIAVMDL---DGGGERVLTDT-GLDESPSFAPNGRMILYATTRG-G 387 (417)
T ss_pred -ccCeEECCCCCE-EEEEEccC---------CceEEEEEeC---CCCCeEEccCC-CCCCCceECCCCCEEEEEEeCC-C
Confidence 346799999998 77775321 3347899998 45555555543 3345689999999999988554 4
Q ss_pred ceeEEEEcCCC
Q 004456 323 QTRTWLVCPGS 333 (752)
Q Consensus 323 ~~~l~~~~~~~ 333 (752)
...|++++.++
T Consensus 388 ~~~l~~~~~~g 398 (417)
T TIGR02800 388 RGVLGLVSTDG 398 (417)
T ss_pred cEEEEEEECCC
Confidence 46788888776
No 38
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.81 E-value=4.4e-18 Score=164.31 Aligned_cols=212 Identities=19% Similarity=0.193 Sum_probs=164.7
Q ss_pred EEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecC
Q 004456 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 562 (752)
Q Consensus 483 ~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~ 562 (752)
+.++++..+ ..+.+++.+|.+ .++.|.||++|+-. +........+..|++.||+|++++
T Consensus 3 ~~v~~~~~~-~~~~~~~a~P~~-----~~~~P~VIv~hei~---------------Gl~~~i~~~a~rlA~~Gy~v~~Pd 61 (236)
T COG0412 3 TDVTIPAPD-GELPAYLARPAG-----AGGFPGVIVLHEIF---------------GLNPHIRDVARRLAKAGYVVLAPD 61 (236)
T ss_pred cceEeeCCC-ceEeEEEecCCc-----CCCCCEEEEEeccc---------------CCchHHHHHHHHHHhCCcEEEech
Confidence 467788766 799999999987 33459999999842 223334467889999999999966
Q ss_pred CCCCCCCCCCCC--C----c-----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE
Q 004456 563 SIPIIGEGDKLP--N----D-----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 631 (752)
Q Consensus 563 ~~~~~g~g~~~~--~----~-----~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v 631 (752)
.+...|...... . . ........|+.++++||.+++.++..+|+++|+||||.+++.++.+.| .++++|
T Consensus 62 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v 140 (236)
T COG0412 62 LYGRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAV 140 (236)
T ss_pred hhccCCCCCcccccHHHHhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEE
Confidence 654434322211 1 0 111567899999999999999899999999999999999999999987 799999
Q ss_pred EccCCCCCCCCccCccccccchhhhHHHHHhcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEE
Q 004456 632 ARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLV 711 (752)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~ 711 (752)
++.|..-.. ......++++|+|+.+|+.|..+| ......+.+++...+..+++.
T Consensus 141 ~fyg~~~~~------------------------~~~~~~~~~~pvl~~~~~~D~~~p--~~~~~~~~~~~~~~~~~~~~~ 194 (236)
T COG0412 141 AFYGGLIAD------------------------DTADAPKIKVPVLLHLAGEDPYIP--AADVDALAAALEDAGVKVDLE 194 (236)
T ss_pred EecCCCCCC------------------------cccccccccCcEEEEecccCCCCC--hhHHHHHHHHHHhcCCCeeEE
Confidence 988842210 001135678999999999999998 888889999999988889999
Q ss_pred EeCCCCccCCccc----------cHHHHHHHHHHHHHHHhc
Q 004456 712 LLPFEHHVYAARE----------NVMHVIWETDRWLQKYCL 742 (752)
Q Consensus 712 ~~~~~~H~~~~~~----------~~~~~~~~~~~fl~~~l~ 742 (752)
+|+++.|+|.... ..+...+.+++||.++++
T Consensus 195 ~y~ga~H~F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~ 235 (236)
T COG0412 195 IYPGAGHGFANDRADYHPGYDAAAAEDAWQRVLAFFKRLLG 235 (236)
T ss_pred EeCCCccccccCCCcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999987542 125678889999999875
No 39
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.81 E-value=8.8e-18 Score=181.34 Aligned_cols=251 Identities=18% Similarity=0.193 Sum_probs=176.7
Q ss_pred CCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCCCCCCccCC
Q 004456 40 PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVP 119 (752)
Q Consensus 40 PDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 119 (752)
+.+.+++|++... ..+..+||+++.+++..++|+.... .+..+.|||||+.|+|.....
T Consensus 153 ~~~~~~~~~~~~~-----~~~~~~l~~~d~~g~~~~~l~~~~~-----~~~~p~~Spdg~~la~~~~~~----------- 211 (417)
T TIGR02800 153 AFSTRIAYVSKSG-----KSRRYELQVADYDGANPQTITRSRE-----PILSPAWSPDGQKLAYVSFES----------- 211 (417)
T ss_pred CcCCEEEEEEEeC-----CCCcceEEEEcCCCCCCEEeecCCC-----ceecccCCCCCCEEEEEEcCC-----------
Confidence 3577899986521 2456789999999999999986543 246779999999999985321
Q ss_pred CCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCccccCCc-cceeccccCCCCceEEEEecccC
Q 004456 120 LGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRP 197 (752)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~ 197 (752)
...+||++++ +|+.+.+... +....+.|||||+.|+|......
T Consensus 212 -----------------------------------~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~ 256 (417)
T TIGR02800 212 -----------------------------------GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDG 256 (417)
T ss_pred -----------------------------------CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCC
Confidence 1157999999 5666666555 55667999999999999754421
Q ss_pred ccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccce
Q 004456 198 YSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDI 277 (752)
Q Consensus 198 ~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~ 277 (752)
..+|+++++.++..+.++..... ...+.|+|||++ |+|.+... ....
T Consensus 257 ----------~~~i~~~d~~~~~~~~l~~~~~~-------------~~~~~~s~dg~~-l~~~s~~~---------g~~~ 303 (417)
T TIGR02800 257 ----------NPDIYVMDLDGKQLTRLTNGPGI-------------DTEPSWSPDGKS-IAFTSDRG---------GSPQ 303 (417)
T ss_pred ----------CccEEEEECCCCCEEECCCCCCC-------------CCCEEECCCCCE-EEEEECCC---------CCce
Confidence 14799999998887777654322 235699999998 88875321 2237
Q ss_pred EEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCc
Q 004456 278 IYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPM 357 (752)
Q Consensus 278 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~ 357 (752)
||++++ .++..+.++........+.|||||+.|++..... ...+|+++++.++ ..+.++.... . ..
T Consensus 304 iy~~d~---~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~-~~~~i~~~d~~~~--~~~~l~~~~~-~-----~~-- 369 (417)
T TIGR02800 304 IYMMDA---DGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREG-GGFNIAVMDLDGG--GERVLTDTGL-D-----ES-- 369 (417)
T ss_pred EEEEEC---CCCCEEEeecCCCCccCeEECCCCCEEEEEEccC-CceEEEEEeCCCC--CeEEccCCCC-C-----CC--
Confidence 899988 5666677776656667889999999999987443 4568999999873 4455543221 1 22
Q ss_pred eeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEe
Q 004456 358 MTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 411 (752)
Q Consensus 358 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~ 411 (752)
.+|+|||++|++..... ....|++++..++..+.+.
T Consensus 370 p~~spdg~~l~~~~~~~------------------~~~~l~~~~~~g~~~~~~~ 405 (417)
T TIGR02800 370 PSFAPNGRMILYATTRG------------------GRGVLGLVSTDGRFRARLP 405 (417)
T ss_pred ceECCCCCEEEEEEeCC------------------CcEEEEEEECCCceeeECC
Confidence 34899999999988431 2235777776554555443
No 40
>PRK10749 lysophospholipase L2; Provisional
Probab=99.81 E-value=6.2e-18 Score=175.09 Aligned_cols=230 Identities=15% Similarity=0.196 Sum_probs=157.3
Q ss_pred eEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEec
Q 004456 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (752)
Q Consensus 482 ~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~ 561 (752)
.+...+...+|.++.+..+.|.. +.|+||++||.+ .....+..++..++++||.|++
T Consensus 30 ~~~~~~~~~~g~~l~~~~~~~~~-------~~~~vll~HG~~---------------~~~~~y~~~~~~l~~~g~~v~~- 86 (330)
T PRK10749 30 REEAEFTGVDDIPIRFVRFRAPH-------HDRVVVICPGRI---------------ESYVKYAELAYDLFHLGYDVLI- 86 (330)
T ss_pred ccceEEEcCCCCEEEEEEccCCC-------CCcEEEEECCcc---------------chHHHHHHHHHHHHHCCCeEEE-
Confidence 45566667788899999887642 247899999952 1222233456678899999999
Q ss_pred CCCCCCCCCCCCCCc--------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEc
Q 004456 562 PSIPIIGEGDKLPND--------RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIAR 633 (752)
Q Consensus 562 ~~~~~~g~g~~~~~~--------~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~ 633 (752)
.+.+|+|.+.... .......+|+.++++.+.... +..++.++||||||.+++.++.++|+.++++|+.
T Consensus 87 --~D~~G~G~S~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~ 162 (330)
T PRK10749 87 --IDHRGQGRSGRLLDDPHRGHVERFNDYVDDLAAFWQQEIQPG--PYRKRYALAHSMGGAILTLFLQRHPGVFDAIALC 162 (330)
T ss_pred --EcCCCCCCCCCCCCCCCcCccccHHHHHHHHHHHHHHHHhcC--CCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEE
Confidence 5666777764321 235667788888887765442 3468999999999999999999999999999999
Q ss_pred cCCCCCCCC-c-c-----------------------C-ccc-ccc------ch--h-hhHHHHHhc--------------
Q 004456 634 SGSYNKTLT-P-F-----------------------G-FQT-EFR------TL--W-EATNVYIEM-------------- 663 (752)
Q Consensus 634 ~~~~~~~~~-~-~-----------------------~-~~~-~~~------~~--~-~~~~~~~~~-------------- 663 (752)
+|....... + . . +.. ... .. . ...+.+...
T Consensus 163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
T PRK10749 163 APMFGIVLPLPSWMARRILNWAEGHPRIRDGYAIGTGRWRPLPFAINVLTHSRERYRRNLRFYADDPELRVGGPTYHWVR 242 (330)
T ss_pred CchhccCCCCCcHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhCCCcccCCCcHHHHH
Confidence 986431100 0 0 0 000 000 00 0 000001100
Q ss_pred -------ChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCC---CcEEEEEeCCCCccCCcccc--HHHHHH
Q 004456 664 -------SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHG---ALSRLVLLPFEHHVYAAREN--VMHVIW 731 (752)
Q Consensus 664 -------~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~H~~~~~~~--~~~~~~ 731 (752)
.....+.++++|+|++||++|.+|+ +..++.+++.++..+ ...+++++|+++|.+..+.. .+.++.
T Consensus 243 ~~~~~~~~~~~~~~~i~~P~Lii~G~~D~vv~--~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~ 320 (330)
T PRK10749 243 ESILAGEQVLAGAGDITTPLLLLQAEEERVVD--NRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALN 320 (330)
T ss_pred HHHHHHHHHHhhccCCCCCEEEEEeCCCeeeC--HHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHH
Confidence 1123456788999999999999999 899999988887654 34689999999999775443 577889
Q ss_pred HHHHHHHHH
Q 004456 732 ETDRWLQKY 740 (752)
Q Consensus 732 ~~~~fl~~~ 740 (752)
.+.+||+++
T Consensus 321 ~i~~fl~~~ 329 (330)
T PRK10749 321 AIVDFFNRH 329 (330)
T ss_pred HHHHHHhhc
Confidence 999999875
No 41
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.81 E-value=5.6e-18 Score=170.21 Aligned_cols=240 Identities=18% Similarity=0.190 Sum_probs=150.6
Q ss_pred CceEEEEEEcC-CCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHH-HhCCcE
Q 004456 480 LQKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIF-LARRFA 557 (752)
Q Consensus 480 ~~~~~~~~~~~-~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~G~~ 557 (752)
...+.+++.+. -+..+.+.+|+|++... ++.|+|+++||.+... ..+.. ......+ .+.||.
T Consensus 11 ~~~~~~~~~s~~~~~~~~~~v~~P~~~~~---~~~P~vvllHG~~~~~-----------~~~~~--~~~~~~la~~~g~~ 74 (275)
T TIGR02821 11 GTQGFYRHKSETCGVPMTFGVFLPPQAAA---GPVPVLWYLSGLTCTH-----------ENFMI--KAGAQRFAAEHGLA 74 (275)
T ss_pred CEEEEEEEeccccCCceEEEEEcCCCccC---CCCCEEEEccCCCCCc-----------cHHHh--hhHHHHHHhhcCcE
Confidence 34555555544 45678899999987432 2489999999964211 11111 0112334 457999
Q ss_pred EEecCCCCCCCCCCCC-------------C---C-chh--HHHHHHHHHHHH-HHHHHcCCCCCCcEEEEEeChHHHHHH
Q 004456 558 VLAGPSIPIIGEGDKL-------------P---N-DRF--VEQLVSSAEAAV-EEVVRRGVADPSRIAVGGHSYGAFMTA 617 (752)
Q Consensus 558 v~~~~~~~~~g~g~~~-------------~---~-~~~--~~~~~~d~~~~~-~~l~~~~~~d~~~i~l~G~S~GG~~a~ 617 (752)
|++++.. .+|.+... . . ... .......+.+.+ ..+.+...+|.++++++|+||||++|+
T Consensus 75 Vv~Pd~~-~~g~~~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~ 153 (275)
T TIGR02821 75 LVAPDTS-PRGTGIAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGAL 153 (275)
T ss_pred EEEeCCC-CCcCCCCCCcccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHH
Confidence 9996541 22222100 0 0 000 001122222233 333333447888999999999999999
Q ss_pred HHHHhCCCceeEEEEccCCCCCCCCccCccccccchhhhHHHHHhcChhhhcC--CCCCCEEEEEeCCCCCCCCCH-HHH
Q 004456 618 HLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHAN--KIKKPILIIHGEVDDKVGLFP-MQA 694 (752)
Q Consensus 618 ~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~P~li~~G~~D~~v~~~~-~~~ 694 (752)
.++.++|+.|+++++++|+.+.....+.........-...+.+...++...+. ...+|+++.||+.|..+| . .++
T Consensus 154 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~plli~~G~~D~~v~--~~~~~ 231 (275)
T TIGR02821 154 VIALKNPDRFKSVSAFAPIVAPSRCPWGQKAFSAYLGADEAAWRSYDASLLVADGGRHSTILIDQGTADQFLD--EQLRP 231 (275)
T ss_pred HHHHhCcccceEEEEECCccCcccCcchHHHHHHHhcccccchhhcchHHHHhhcccCCCeeEeecCCCcccC--ccccH
Confidence 99999999999999999987643222110000000001111222334443332 246899999999999998 7 578
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHHHHh
Q 004456 695 ERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 741 (752)
Q Consensus 695 ~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 741 (752)
..+.++|++.+.++++..+|+++|.+.. +...+...++|+.+++
T Consensus 232 ~~~~~~l~~~g~~v~~~~~~g~~H~f~~---~~~~~~~~~~~~~~~~ 275 (275)
T TIGR02821 232 DAFEQACRAAGQALTLRRQAGYDHSYYF---IASFIADHLRHHAERL 275 (275)
T ss_pred HHHHHHHHHcCCCeEEEEeCCCCccchh---HHHhHHHHHHHHHhhC
Confidence 8899999999999999999999998653 5677888888888764
No 42
>PLN02442 S-formylglutathione hydrolase
Probab=99.80 E-value=7.3e-18 Score=169.48 Aligned_cols=241 Identities=21% Similarity=0.215 Sum_probs=151.1
Q ss_pred CCceEEEEEEcC-CCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcE
Q 004456 479 SLQKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA 557 (752)
Q Consensus 479 ~~~~~~~~~~~~-~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~ 557 (752)
...++.+++.+. -+..+...+|+|+.. + ..++|+|+++||.+... ..+... ......+...||+
T Consensus 15 ~~~~~~~~~~s~~l~~~~~~~vy~P~~~-~--~~~~Pvv~~lHG~~~~~-----------~~~~~~-~~~~~~~~~~g~~ 79 (283)
T PLN02442 15 GGFNRRYKHFSSTLGCSMTFSVYFPPAS-D--SGKVPVLYWLSGLTCTD-----------ENFIQK-SGAQRAAAARGIA 79 (283)
T ss_pred CCEEEEEEEeccccCCceEEEEEcCCcc-c--CCCCCEEEEecCCCcCh-----------HHHHHh-hhHHHHHhhcCeE
Confidence 456677777653 456899999999842 2 23599999999964211 111110 0123455678999
Q ss_pred EEecCCCCCCC-------------CCCCCC-----C----chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHH
Q 004456 558 VLAGPSIPIIG-------------EGDKLP-----N----DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFM 615 (752)
Q Consensus 558 v~~~~~~~~~g-------------~g~~~~-----~----~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~ 615 (752)
|+.++.. .+| .+.+.. . ..+.....+++...++...+ .+|.++++|+|+||||++
T Consensus 80 Vv~pd~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~--~~~~~~~~i~G~S~GG~~ 156 (283)
T PLN02442 80 LVAPDTS-PRGLNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNFD--QLDTSRASIFGHSMGGHG 156 (283)
T ss_pred EEecCCC-CCCCCCCCCccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHHH--hcCCCceEEEEEChhHHH
Confidence 9995532 111 111100 0 01122233444444433322 257889999999999999
Q ss_pred HHHHHHhCCCceeEEEEccCCCCCCCCccCccccc---cchhhhHHHHHhcChhhhcCCCCCCEEEEEeCCCCCCCCCHH
Q 004456 616 TAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEF---RTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPM 692 (752)
Q Consensus 616 a~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~ 692 (752)
|+.++.++|++|+++++++|+.+.....+...... .......+.+...+++..+...++|+|++||++|.+++ ..
T Consensus 157 a~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~~~pvli~~G~~D~~v~--~~ 234 (283)
T PLN02442 157 ALTIYLKNPDKYKSVSAFAPIANPINCPWGQKAFTNYLGSDKADWEEYDATELVSKFNDVSATILIDQGEADKFLK--EQ 234 (283)
T ss_pred HHHHHHhCchhEEEEEEECCccCcccCchhhHHHHHHcCCChhhHHHcChhhhhhhccccCCCEEEEECCCCcccc--cc
Confidence 99999999999999999999877432222110000 00111112222334444555668999999999999987 53
Q ss_pred -HHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHHHHhc
Q 004456 693 -QAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 742 (752)
Q Consensus 693 -~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 742 (752)
+++.+++++++.+.+++++++|+++|.+. ....++...+.|..++++
T Consensus 235 ~~s~~~~~~l~~~g~~~~~~~~pg~~H~~~---~~~~~i~~~~~~~~~~~~ 282 (283)
T PLN02442 235 LLPENFEEACKEAGAPVTLRLQPGYDHSYF---FIATFIDDHINHHAQALK 282 (283)
T ss_pred ccHHHHHHHHHHcCCCeEEEEeCCCCccHH---HHHHHHHHHHHHHHHHhc
Confidence 57889999999999999999999999854 344555555666666553
No 43
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=99.79 E-value=4.1e-18 Score=171.60 Aligned_cols=233 Identities=20% Similarity=0.178 Sum_probs=151.4
Q ss_pred cCCCceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCc
Q 004456 477 LASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF 556 (752)
Q Consensus 477 ~~~~~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~ 556 (752)
.+...+..++|.+.+|..|.|++++|+.. +++.|+||.+||.+... ..+.....++.+||
T Consensus 51 ~~~~~vy~v~f~s~~g~~V~g~l~~P~~~----~~~~Pavv~~hGyg~~~----------------~~~~~~~~~a~~G~ 110 (320)
T PF05448_consen 51 TPGVEVYDVSFESFDGSRVYGWLYRPKNA----KGKLPAVVQFHGYGGRS----------------GDPFDLLPWAAAGY 110 (320)
T ss_dssp BSSEEEEEEEEEEGGGEEEEEEEEEES-S----SSSEEEEEEE--TT--G----------------GGHHHHHHHHHTT-
T ss_pred CCCEEEEEEEEEccCCCEEEEEEEecCCC----CCCcCEEEEecCCCCCC----------------CCcccccccccCCe
Confidence 35578889999999999999999999842 45699999999964221 01122446789999
Q ss_pred EEEecCCCCCCCCC------------------CCC-CCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHH
Q 004456 557 AVLAGPSIPIIGEG------------------DKL-PNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTA 617 (752)
Q Consensus 557 ~v~~~~~~~~~g~g------------------~~~-~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~ 617 (752)
+|+..+.++..|.. -.. ....++...+.|...++++|.+++.+|.+||++.|.|+||.+++
T Consensus 111 ~vl~~d~rGqg~~~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal 190 (320)
T PF05448_consen 111 AVLAMDVRGQGGRSPDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLAL 190 (320)
T ss_dssp EEEEE--TTTSSSS-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHH
T ss_pred EEEEecCCCCCCCCCCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHH
Confidence 99995544333211 001 22335567789999999999999999999999999999999999
Q ss_pred HHHHhCCCceeEEEEccCCCCCCCCccCccccccchh---------------hhH---HHHHhcChhhhcCCCCCCEEEE
Q 004456 618 HLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLW---------------EAT---NVYIEMSPITHANKIKKPILII 679 (752)
Q Consensus 618 ~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---------------~~~---~~~~~~~~~~~~~~~~~P~li~ 679 (752)
.+++..+ +++++++..|........+.... ...+| ... +.+.-.+.+..++++++|+++.
T Consensus 191 ~~aaLd~-rv~~~~~~vP~l~d~~~~~~~~~-~~~~y~~~~~~~~~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~pvl~~ 268 (320)
T PF05448_consen 191 AAAALDP-RVKAAAADVPFLCDFRRALELRA-DEGPYPEIRRYFRWRDPHHEREPEVFETLSYFDAVNFARRIKCPVLFS 268 (320)
T ss_dssp HHHHHSS-T-SEEEEESESSSSHHHHHHHT---STTTHHHHHHHHHHSCTHCHHHHHHHHHHTT-HHHHGGG--SEEEEE
T ss_pred HHHHhCc-cccEEEecCCCccchhhhhhcCC-ccccHHHHHHHHhccCCCcccHHHHHHHHhhhhHHHHHHHcCCCEEEE
Confidence 9999985 69999988886431000000000 00111 111 1223335666778899999999
Q ss_pred EeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHHHH
Q 004456 680 HGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 740 (752)
Q Consensus 680 ~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 740 (752)
.|-.|..|| +.-..+.++++. .+.++.+||..+|... .....+..++||.+|
T Consensus 269 ~gl~D~~cP--P~t~fA~yN~i~---~~K~l~vyp~~~He~~----~~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 269 VGLQDPVCP--PSTQFAAYNAIP---GPKELVVYPEYGHEYG----PEFQEDKQLNFLKEH 320 (320)
T ss_dssp EETT-SSS---HHHHHHHHCC-----SSEEEEEETT--SSTT----HHHHHHHHHHHHHH-
T ss_pred EecCCCCCC--chhHHHHHhccC---CCeeEEeccCcCCCch----hhHHHHHHHHHHhcC
Confidence 999999998 888777777764 4579999999999654 233367789999875
No 44
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.78 E-value=6.4e-17 Score=169.09 Aligned_cols=232 Identities=15% Similarity=0.132 Sum_probs=159.3
Q ss_pred eEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEec
Q 004456 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (752)
Q Consensus 482 ~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~ 561 (752)
.....+...++..+.+..|.|.. ..+.|+||++||.+. ....+..++..|+++||.|++
T Consensus 110 ~~~~~~~~~~~~~l~~~~~~p~~-----~~~~~~Vl~lHG~~~---------------~~~~~~~~a~~L~~~Gy~V~~- 168 (395)
T PLN02652 110 WATSLFYGARRNALFCRSWAPAA-----GEMRGILIIIHGLNE---------------HSGRYLHFAKQLTSCGFGVYA- 168 (395)
T ss_pred EEEEEEECCCCCEEEEEEecCCC-----CCCceEEEEECCchH---------------HHHHHHHHHHHHHHCCCEEEE-
Confidence 45666777788899999999864 223689999999531 111122457788899999999
Q ss_pred CCCCCCCCCCCCCC---chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC---ceeEEEEccC
Q 004456 562 PSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH---LFCCGIARSG 635 (752)
Q Consensus 562 ~~~~~~g~g~~~~~---~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~---~~~~~v~~~~ 635 (752)
++.+|+|.+... ........+|+.++++++.... +..+++|+||||||.+++.++. +|+ .++++|+.+|
T Consensus 169 --~D~rGhG~S~~~~~~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP 243 (395)
T PLN02652 169 --MDWIGHGGSDGLHGYVPSLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSP 243 (395)
T ss_pred --eCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECc
Confidence 666777776433 2245566789999999997653 2347999999999999997764 453 7899999998
Q ss_pred CCCCCCCc----------------cCccc---cccchhhhH----HHH------------------Hhc-C-hhhhcCCC
Q 004456 636 SYNKTLTP----------------FGFQT---EFRTLWEAT----NVY------------------IEM-S-PITHANKI 672 (752)
Q Consensus 636 ~~~~~~~~----------------~~~~~---~~~~~~~~~----~~~------------------~~~-~-~~~~~~~~ 672 (752)
........ +.+.. .......++ ..+ ... . ....+.++
T Consensus 244 ~l~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I 323 (395)
T PLN02652 244 ALRVKPAHPIVGAVAPIFSLVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSV 323 (395)
T ss_pred ccccccchHHHHHHHHHHHHhCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccC
Confidence 75322100 00000 000000000 000 000 0 12235678
Q ss_pred CCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHHHHhcC
Q 004456 673 KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 743 (752)
Q Consensus 673 ~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~ 743 (752)
++|+|++||++|.++| +..++++++.+... ..+++++++++|.....+.++++++.+.+||+.++..
T Consensus 324 ~vPvLIi~G~~D~vvp--~~~a~~l~~~~~~~--~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~~~ 390 (395)
T PLN02652 324 TVPFMVLHGTADRVTD--PLASQDLYNEAASR--HKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRLDL 390 (395)
T ss_pred CCCEEEEEeCCCCCCC--HHHHHHHHHhcCCC--CceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999 99999888876443 3578889999999776667889999999999999853
No 45
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=99.76 E-value=1.4e-17 Score=147.06 Aligned_cols=236 Identities=19% Similarity=0.237 Sum_probs=170.7
Q ss_pred CCCCCcCCCceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHH-H
Q 004456 472 HPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSL-I 550 (752)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 550 (752)
.+.|....++.|++++.+.|..++++++++... ..|+++++|+...+. +.+...+. .
T Consensus 44 vptP~~~n~pye~i~l~T~D~vtL~a~~~~~E~-------S~pTlLyfh~NAGNm---------------Ghr~~i~~~f 101 (300)
T KOG4391|consen 44 VPTPKEFNMPYERIELRTRDKVTLDAYLMLSES-------SRPTLLYFHANAGNM---------------GHRLPIARVF 101 (300)
T ss_pred CCCccccCCCceEEEEEcCcceeEeeeeecccC-------CCceEEEEccCCCcc---------------cchhhHHHHH
Confidence 455677789999999999999999999998332 379999999953221 11112222 4
Q ss_pred HHhCCcEEEecCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEE
Q 004456 551 FLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCG 630 (752)
Q Consensus 551 l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~ 630 (752)
+.+.+..|+.+ ..+|||.+.+. .....+.-|..++++||..++..|..+|+++|.|.||.+|..+|+...+++.|+
T Consensus 102 y~~l~mnv~iv---sYRGYG~S~Gs-psE~GL~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ 177 (300)
T KOG4391|consen 102 YVNLKMNVLIV---SYRGYGKSEGS-PSEEGLKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAI 177 (300)
T ss_pred HHHcCceEEEE---EeeccccCCCC-ccccceeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeee
Confidence 56789999994 55688876433 333556778899999999999999999999999999999999999998899999
Q ss_pred EEccCCCCCC--CCccCcccc--ccchhhhHHHHHhcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCC
Q 004456 631 IARSGSYNKT--LTPFGFQTE--FRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGA 706 (752)
Q Consensus 631 v~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~ 706 (752)
|+..-+.... ..+..++.. .-..|.....| .....++.-+.|.|++.|.+|.+|| +.+.+++++.+....
T Consensus 178 ivENTF~SIp~~~i~~v~p~~~k~i~~lc~kn~~---~S~~ki~~~~~P~LFiSGlkDelVP--P~~Mr~Ly~~c~S~~- 251 (300)
T KOG4391|consen 178 IVENTFLSIPHMAIPLVFPFPMKYIPLLCYKNKW---LSYRKIGQCRMPFLFISGLKDELVP--PVMMRQLYELCPSRT- 251 (300)
T ss_pred eeechhccchhhhhheeccchhhHHHHHHHHhhh---cchhhhccccCceEEeecCccccCC--cHHHHHHHHhCchhh-
Confidence 8877654421 112222211 11122222222 2333445557999999999999999 999999999887653
Q ss_pred cEEEEEeCCCCccCCccccHHHHHHHHHHHHHHHhc
Q 004456 707 LSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 742 (752)
Q Consensus 707 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 742 (752)
.++..||++.|.-... -..+++.+.+||.+.-.
T Consensus 252 -Krl~eFP~gtHNDT~i--~dGYfq~i~dFlaE~~~ 284 (300)
T KOG4391|consen 252 -KRLAEFPDGTHNDTWI--CDGYFQAIEDFLAEVVK 284 (300)
T ss_pred -hhheeCCCCccCceEE--eccHHHHHHHHHHHhcc
Confidence 3799999999964321 24678899999998754
No 46
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.76 E-value=6.9e-17 Score=168.42 Aligned_cols=209 Identities=18% Similarity=0.215 Sum_probs=155.2
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (752)
-+..|+|||||+.|+|+.-.. ....++|++++++++..++..... ....+.|||||+.|+|..... +
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~------~~~~~i~~~~l~~g~~~~i~~~~g-----~~~~P~fspDG~~l~f~~~rd-g- 260 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFEL------GGCPRIYYLDLNTGKRPVILNFNG-----NNGAPAFSPDGSKLAFSSSRD-G- 260 (425)
T ss_pred ceeccccCcCCCceEEEEEec------CCCceEEEEeccCCccceeeccCC-----ccCCccCCCCCCEEEEEECCC-C-
Confidence 477799999999999985421 222789999999998777765443 235779999999999986532 1
Q ss_pred CCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCC-CccccCCc-cceeccccCCCCceE
Q 004456 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP-AVYTAVEPSPDQKYV 189 (752)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G-~~~~l~~~-~~~~~~~~SpDGk~l 189 (752)
..+||++|+++ ...+|+.. +....+.|||||++|
T Consensus 261 --------------------------------------------~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~i 296 (425)
T COG0823 261 --------------------------------------------SPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKI 296 (425)
T ss_pred --------------------------------------------CccEEEEcCCCCcceecccCCccccCccCCCCCCEE
Confidence 16899999966 77778877 666699999999999
Q ss_pred EEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCc
Q 004456 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (752)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~ 269 (752)
+|.+.+.. ..+|+++++++++.++++....... .+.|||||++ |+|.... .+.
T Consensus 297 vf~Sdr~G----------~p~I~~~~~~g~~~~riT~~~~~~~-------------~p~~SpdG~~-i~~~~~~-~g~-- 349 (425)
T COG0823 297 VFTSDRGG----------RPQIYLYDLEGSQVTRLTFSGGGNS-------------NPVWSPDGDK-IVFESSS-GGQ-- 349 (425)
T ss_pred EEEeCCCC----------CcceEEECCCCCceeEeeccCCCCc-------------CccCCCCCCE-EEEEecc-CCc--
Confidence 99987753 2489999999999998888766533 4599999999 8888632 111
Q ss_pred cccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCC
Q 004456 270 VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (752)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 334 (752)
-.+...++ ..+....+.........+.|+|+|+.+.|.+... ....|+.++..+.
T Consensus 350 ------~~i~~~~~---~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~-~~~~l~~~s~~g~ 404 (425)
T COG0823 350 ------WDIDKNDL---ASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG-GGSVLSLVSLDGR 404 (425)
T ss_pred ------eeeEEecc---CCCCcEEEccccccCCCCCcCCCCceEEEeccCC-CCceEEEeeccce
Confidence 24666666 2223234444555556789999999999987444 5667888887763
No 47
>PRK10162 acetyl esterase; Provisional
Probab=99.76 E-value=1e-16 Score=164.12 Aligned_cols=232 Identities=14% Similarity=0.100 Sum_probs=157.7
Q ss_pred CceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHh-CCcEE
Q 004456 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAV 558 (752)
Q Consensus 480 ~~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v 558 (752)
...+.+.++..+| .+.+.+|.|.. . ..|+||++|||+|..++ ...+ ...+..|+. .|+.|
T Consensus 55 ~~~~~~~i~~~~g-~i~~~~y~P~~-----~-~~p~vv~~HGGg~~~g~--------~~~~----~~~~~~la~~~g~~V 115 (318)
T PRK10162 55 MATRAYMVPTPYG-QVETRLYYPQP-----D-SQATLFYLHGGGFILGN--------LDTH----DRIMRLLASYSGCTV 115 (318)
T ss_pred ceEEEEEEecCCC-ceEEEEECCCC-----C-CCCEEEEEeCCcccCCC--------chhh----hHHHHHHHHHcCCEE
Confidence 4578888887776 69999999963 1 26999999999865322 1112 134566776 69999
Q ss_pred EecCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC------CCceeE
Q 004456 559 LAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR---GVADPSRIAVGGHSYGAFMTAHLLAHA------PHLFCC 629 (752)
Q Consensus 559 ~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~~~~~------p~~~~~ 629 (752)
+.++|+..... .+...++|+.++++|+.+. ..+|.+||+|+|+|+||++|+.++.+. +..+++
T Consensus 116 v~vdYrlape~--------~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~ 187 (318)
T PRK10162 116 IGIDYTLSPEA--------RFPQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAG 187 (318)
T ss_pred EEecCCCCCCC--------CCCCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhh
Confidence 99887543321 1233578899999999764 347889999999999999999988652 356889
Q ss_pred EEEccCCCCCCCCccCccccccc-hhh--hHH----HHH-----hcChhhhc--CCC---CCCEEEEEeCCCCCCCCCHH
Q 004456 630 GIARSGSYNKTLTPFGFQTEFRT-LWE--ATN----VYI-----EMSPITHA--NKI---KKPILIIHGEVDDKVGLFPM 692 (752)
Q Consensus 630 ~v~~~~~~~~~~~~~~~~~~~~~-~~~--~~~----~~~-----~~~~~~~~--~~~---~~P~li~~G~~D~~v~~~~~ 692 (752)
+|+++|..+.............. .+. ... .|. ..+|.... ..+ -+|++|++|+.|.+. .
T Consensus 188 ~vl~~p~~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~p~~~p~~~~l~~~lPp~~i~~g~~D~L~----d 263 (318)
T PRK10162 188 VLLWYGLYGLRDSVSRRLLGGVWDGLTQQDLQMYEEAYLSNDADRESPYYCLFNNDLTRDVPPCFIAGAEFDPLL----D 263 (318)
T ss_pred eEEECCccCCCCChhHHHhCCCccccCHHHHHHHHHHhCCCccccCCcccCcchhhhhcCCCCeEEEecCCCcCc----C
Confidence 99999987643211000000000 000 000 111 11222110 122 379999999999884 4
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCccCCcc----ccHHHHHHHHHHHHHHHhc
Q 004456 693 QAERFFDALKGHGALSRLVLLPFEHHVYAAR----ENVMHVIWETDRWLQKYCL 742 (752)
Q Consensus 693 ~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~----~~~~~~~~~~~~fl~~~l~ 742 (752)
+++.+.++|++.|++++++++++..|++... +...+.++.+.+||.++|+
T Consensus 264 e~~~~~~~L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 264 DSRLLYQTLAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred hHHHHHHHHHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 7889999999999999999999999987533 2345778889999999875
No 48
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.75 E-value=1.9e-17 Score=148.07 Aligned_cols=198 Identities=17% Similarity=0.136 Sum_probs=142.2
Q ss_pred eEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCC--CCCchhHHHHHHHHHHHHH
Q 004456 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDK--LPNDRFVEQLVSSAEAAVE 591 (752)
Q Consensus 514 P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~--~~~~~~~~~~~~d~~~~~~ 591 (752)
-.|+++||. +|++... ...+..|.++||.|.++. .+|+|.. ..-.....+..+|+.++.+
T Consensus 16 ~AVLllHGF-----------TGt~~Dv----r~Lgr~L~e~GyTv~aP~---ypGHG~~~e~fl~t~~~DW~~~v~d~Y~ 77 (243)
T COG1647 16 RAVLLLHGF-----------TGTPRDV----RMLGRYLNENGYTVYAPR---YPGHGTLPEDFLKTTPRDWWEDVEDGYR 77 (243)
T ss_pred EEEEEEecc-----------CCCcHHH----HHHHHHHHHCCceEecCC---CCCCCCCHHHHhcCCHHHHHHHHHHHHH
Confidence 789999994 4444433 356778899999999933 4455543 1223345678899999999
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCc----------c-ccccchhhhHHHH
Q 004456 592 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGF----------Q-TEFRTLWEATNVY 660 (752)
Q Consensus 592 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~ 660 (752)
+|++.++ +.|+++|.||||.+++.++.+.| ++++|.+|+..+........ . .+........+.+
T Consensus 78 ~L~~~gy---~eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~y~~~~kk~e~k~~e~~~~e~ 152 (243)
T COG1647 78 DLKEAGY---DEIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLEYFRNAKKYEGKDQEQIDKEM 152 (243)
T ss_pred HHHHcCC---CeEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHHHHHHhhhccCCCHHHHHHHH
Confidence 9998876 78999999999999999999997 78888888765421110000 0 0001111111111
Q ss_pred Hhc----------------ChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccc
Q 004456 661 IEM----------------SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARE 724 (752)
Q Consensus 661 ~~~----------------~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~ 724 (752)
... .....+++|..|+|+++|.+|+.|| .+.+.-++...... +.++.++++.||.+....
T Consensus 153 ~~~~~~~~~~~~~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~--~~sA~~Iy~~v~s~--~KeL~~~e~SgHVIt~D~ 228 (243)
T COG1647 153 KSYKDTPMTTTAQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVP--AESANFIYDHVESD--DKELKWLEGSGHVITLDK 228 (243)
T ss_pred HHhhcchHHHHHHHHHHHHHHHhhhhhcccchhheecccCCCCC--HHHHHHHHHhccCC--cceeEEEccCCceeecch
Confidence 111 1233567889999999999999999 88888888887654 458999999999999888
Q ss_pred cHHHHHHHHHHHHH
Q 004456 725 NVMHVIWETDRWLQ 738 (752)
Q Consensus 725 ~~~~~~~~~~~fl~ 738 (752)
..+++.+.+..||+
T Consensus 229 Erd~v~e~V~~FL~ 242 (243)
T COG1647 229 ERDQVEEDVITFLE 242 (243)
T ss_pred hHHHHHHHHHHHhh
Confidence 88999999999996
No 49
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.74 E-value=3.6e-17 Score=151.56 Aligned_cols=221 Identities=19% Similarity=0.183 Sum_probs=159.9
Q ss_pred ceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHh-CCcEEE
Q 004456 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVL 559 (752)
Q Consensus 481 ~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~ 559 (752)
..+.+..++..|..+.+..+.|+.. ..+++++.||.... ... ...+...|.. .++.++
T Consensus 34 ~v~v~~~~t~rgn~~~~~y~~~~~~------~~~~lly~hGNa~D--------------lgq-~~~~~~~l~~~ln~nv~ 92 (258)
T KOG1552|consen 34 FVEVFKVKTSRGNEIVCMYVRPPEA------AHPTLLYSHGNAAD--------------LGQ-MVELFKELSIFLNCNVV 92 (258)
T ss_pred ccceEEeecCCCCEEEEEEEcCccc------cceEEEEcCCcccc--------------hHH-HHHHHHHHhhcccceEE
Confidence 5667777778888999999988762 36999999994110 000 0012222322 589999
Q ss_pred ecCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCC
Q 004456 560 AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK 639 (752)
Q Consensus 560 ~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~ 639 (752)
. +++.|+|.+.+. ..-..+++|+.++.+||++... ..++|+|+|+|+|...+..+|++.| .+++|+.+|+.+.
T Consensus 93 ~---~DYSGyG~S~G~-psE~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~ 165 (258)
T KOG1552|consen 93 S---YDYSGYGRSSGK-PSERNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSG 165 (258)
T ss_pred E---EecccccccCCC-cccccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhh
Confidence 9 777888877433 2233778999999999999875 6789999999999999999999997 8999999998763
Q ss_pred CCCccCccccccchhhhHHHHHhcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCcc
Q 004456 640 TLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHV 719 (752)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 719 (752)
.-..+ +......|.+. ..-+..+..+++|+|++||++|.+|| ..++++++++++.. ++..++.|+||.
T Consensus 166 ~rv~~--~~~~~~~~~d~-----f~~i~kI~~i~~PVLiiHgtdDevv~--~sHg~~Lye~~k~~---~epl~v~g~gH~ 233 (258)
T KOG1552|consen 166 MRVAF--PDTKTTYCFDA-----FPNIEKISKITCPVLIIHGTDDEVVD--FSHGKALYERCKEK---VEPLWVKGAGHN 233 (258)
T ss_pred hhhhc--cCcceEEeecc-----ccccCcceeccCCEEEEecccCceec--ccccHHHHHhcccc---CCCcEEecCCCc
Confidence 21111 10111111110 11255677789999999999999999 89999999988765 678888999997
Q ss_pred CCccccHHHHHHHHHHHHHHHhcC
Q 004456 720 YAARENVMHVIWETDRWLQKYCLS 743 (752)
Q Consensus 720 ~~~~~~~~~~~~~~~~fl~~~l~~ 743 (752)
.. +...+++..+..|+...+..
T Consensus 234 ~~--~~~~~yi~~l~~f~~~~~~~ 255 (258)
T KOG1552|consen 234 DI--ELYPEYIEHLRRFISSVLPS 255 (258)
T ss_pred cc--ccCHHHHHHHHHHHHHhccc
Confidence 43 33457888888888877654
No 50
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.74 E-value=8.3e-16 Score=160.36 Aligned_cols=232 Identities=16% Similarity=0.120 Sum_probs=169.9
Q ss_pred cEEEEEccCC-CccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCC
Q 004456 157 AQLVLGSLDG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (752)
Q Consensus 157 ~~i~~~~~~G-~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (752)
.++++.|-+| ..+.++.. .....+.|||||+.|+|....... ...++++++++++...+........
T Consensus 173 ~~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~---------~~~i~~~~l~~g~~~~i~~~~g~~~-- 241 (425)
T COG0823 173 YELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGG---------CPRIYYLDLNTGKRPVILNFNGNNG-- 241 (425)
T ss_pred ceEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCC---------CceEEEEeccCCccceeeccCCccC--
Confidence 6899999989 55666665 777899999999999998765421 1479999999988877777666644
Q ss_pred cccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEE
Q 004456 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALV 314 (752)
Q Consensus 235 ~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~ 314 (752)
.++|||||++ |+|+...+ ..-.||+.|+ .++....|+...+....++|||||++|+
T Consensus 242 -----------~P~fspDG~~-l~f~~~rd---------g~~~iy~~dl---~~~~~~~Lt~~~gi~~~Ps~spdG~~iv 297 (425)
T COG0823 242 -----------APAFSPDGSK-LAFSSSRD---------GSPDIYLMDL---DGKNLPRLTNGFGINTSPSWSPDGSKIV 297 (425)
T ss_pred -----------CccCCCCCCE-EEEEECCC---------CCccEEEEcC---CCCcceecccCCccccCccCCCCCCEEE
Confidence 4599999999 88887543 3337999999 6677777888888888999999999999
Q ss_pred EeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCC
Q 004456 315 NETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNI 394 (752)
Q Consensus 315 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 394 (752)
|.+... +...||+++++++ ...+++...... ..|. |||||++|+|.... ..+
T Consensus 298 f~Sdr~-G~p~I~~~~~~g~--~~~riT~~~~~~-----~~p~--~SpdG~~i~~~~~~------------------~g~ 349 (425)
T COG0823 298 FTSDRG-GRPQIYLYDLEGS--QVTRLTFSGGGN-----SNPV--WSPDGDKIVFESSS------------------GGQ 349 (425)
T ss_pred EEeCCC-CCcceEEECCCCC--ceeEeeccCCCC-----cCcc--CCCCCCEEEEEecc------------------CCc
Confidence 998544 5568999999994 446666554443 2444 99999999999722 111
Q ss_pred CeeEEEecCCCce-eEEeeccchhhhhceeeeecCCcceecccCCCEEEEEEecCCCCcEEEEEECCCCCee
Q 004456 395 PFLDLFDINTGSK-ERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSS 465 (752)
Q Consensus 395 ~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~~g~~~ 465 (752)
..|...|+.++.. +.++... ....++|+++|+.++|..... .-+.++.++..+....
T Consensus 350 ~~i~~~~~~~~~~~~~lt~~~-------------~~e~ps~~~ng~~i~~~s~~~-~~~~l~~~s~~g~~~~ 407 (425)
T COG0823 350 WDIDKNDLASGGKIRILTSTY-------------LNESPSWAPNGRMIMFSSGQG-GGSVLSLVSLDGRVSR 407 (425)
T ss_pred eeeEEeccCCCCcEEEccccc-------------cCCCCCcCCCCceEEEeccCC-CCceEEEeeccceeEE
Confidence 4588888887763 3333221 122368999999999987666 4555777765544443
No 51
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.73 E-value=6.1e-17 Score=148.90 Aligned_cols=229 Identities=18% Similarity=0.220 Sum_probs=156.7
Q ss_pred CCCceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcE
Q 004456 478 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA 557 (752)
Q Consensus 478 ~~~~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~ 557 (752)
+..++-.++|.+.+|.+|.+|+.+|... +++.|+||..||.+.+.+ .+ .-...++..||+
T Consensus 52 ~~ve~ydvTf~g~~g~rI~gwlvlP~~~----~~~~P~vV~fhGY~g~~g-----------~~-----~~~l~wa~~Gya 111 (321)
T COG3458 52 PRVEVYDVTFTGYGGARIKGWLVLPRHE----KGKLPAVVQFHGYGGRGG-----------EW-----HDMLHWAVAGYA 111 (321)
T ss_pred CceEEEEEEEeccCCceEEEEEEeeccc----CCccceEEEEeeccCCCC-----------Cc-----ccccccccccee
Confidence 4456788999999999999999999862 367999999999643221 11 112356789999
Q ss_pred EEecCCCCCCCCCCCCC-------C----------------chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHH
Q 004456 558 VLAGPSIPIIGEGDKLP-------N----------------DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAF 614 (752)
Q Consensus 558 v~~~~~~~~~g~g~~~~-------~----------------~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~ 614 (752)
|+. ++.+|.|.+.. + ..++...+.|+..+++-+.....+|.+||++.|.|+||.
T Consensus 112 vf~---MdvRGQg~~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGg 188 (321)
T COG3458 112 VFV---MDVRGQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGG 188 (321)
T ss_pred EEE---EecccCCCccccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCch
Confidence 999 55555543311 0 112335578999999999999999999999999999999
Q ss_pred HHHHHHHhCCCceeEEEEccCCCCCCCCccCccccccchhh------------hHHHHHhc---ChhhhcCCCCCCEEEE
Q 004456 615 MTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWE------------ATNVYIEM---SPITHANKIKKPILII 679 (752)
Q Consensus 615 ~a~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~---~~~~~~~~~~~P~li~ 679 (752)
+++.+++..| +++++++..|.....-..... ....++. ..+.+... +.+..+.+++.|+|+.
T Consensus 189 lalaaaal~~-rik~~~~~~Pfl~df~r~i~~--~~~~~ydei~~y~k~h~~~e~~v~~TL~yfD~~n~A~RiK~pvL~s 265 (321)
T COG3458 189 LALAAAALDP-RIKAVVADYPFLSDFPRAIEL--ATEGPYDEIQTYFKRHDPKEAEVFETLSYFDIVNLAARIKVPVLMS 265 (321)
T ss_pred hhhhhhhcCh-hhhcccccccccccchhheee--cccCcHHHHHHHHHhcCchHHHHHHHHhhhhhhhHHHhhccceEEe
Confidence 9999999985 689999988875411111111 1111111 11122221 2233456789999999
Q ss_pred EeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHHHHh
Q 004456 680 HGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 741 (752)
Q Consensus 680 ~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 741 (752)
.|-.|++|| +.-.-++++++... .++.+||.-+|... +....+++..|+....
T Consensus 266 vgL~D~vcp--PstqFA~yN~l~~~---K~i~iy~~~aHe~~----p~~~~~~~~~~l~~l~ 318 (321)
T COG3458 266 VGLMDPVCP--PSTQFAAYNALTTS---KTIEIYPYFAHEGG----PGFQSRQQVHFLKILF 318 (321)
T ss_pred ecccCCCCC--ChhhHHHhhcccCC---ceEEEeeccccccC----cchhHHHHHHHHHhhc
Confidence 999999998 77767777777543 47788887778533 2233445677776654
No 52
>PRK11460 putative hydrolase; Provisional
Probab=99.72 E-value=5.7e-16 Score=150.78 Aligned_cols=128 Identities=21% Similarity=0.161 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCccccccchhhhHHHHH
Q 004456 582 LVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYI 661 (752)
Q Consensus 582 ~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (752)
....+.+.++++.++..++.+||+|+||||||.+++.++.++|+.+.++|++++.... .+
T Consensus 83 ~~~~l~~~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~~------~~-------------- 142 (232)
T PRK11460 83 IMPTFIETVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYAS------LP-------------- 142 (232)
T ss_pred HHHHHHHHHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEecccccc------cc--------------
Confidence 3455666777777777788899999999999999999999998888888877763210 00
Q ss_pred hcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHHHHh
Q 004456 662 EMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 741 (752)
Q Consensus 662 ~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 741 (752)
.....++|+|++||++|.+|| ++.++++.++|++.+.++++++|++++|.+.. +.+..+.+||.+.|
T Consensus 143 ------~~~~~~~pvli~hG~~D~vvp--~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~~-----~~~~~~~~~l~~~l 209 (232)
T PRK11460 143 ------ETAPTATTIHLIHGGEDPVID--VAHAVAAQEALISLGGDVTLDIVEDLGHAIDP-----RLMQFALDRLRYTV 209 (232)
T ss_pred ------ccccCCCcEEEEecCCCCccC--HHHHHHHHHHHHHCCCCeEEEEECCCCCCCCH-----HHHHHHHHHHHHHc
Confidence 011236899999999999999 99999999999999999999999999999862 55667777777766
Q ss_pred c
Q 004456 742 L 742 (752)
Q Consensus 742 ~ 742 (752)
.
T Consensus 210 ~ 210 (232)
T PRK11460 210 P 210 (232)
T ss_pred c
Confidence 3
No 53
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.72 E-value=5e-15 Score=145.35 Aligned_cols=250 Identities=12% Similarity=0.045 Sum_probs=180.9
Q ss_pred ceeEEeecCCCCCCCCceeecCCCCCceeceeE-ecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCC-CC
Q 004456 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVS-WSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES-PD 82 (752)
Q Consensus 5 ~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~-~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~-~~ 82 (752)
.+||-.++++ ...++.|++. +..|+ .+-|||.|+| ...++||++|.++.....|--. +.
T Consensus 248 GnlYSvdldG----kDlrrHTnFt----dYY~R~~nsDGkrIvF-----------q~~GdIylydP~td~lekldI~lpl 308 (668)
T COG4946 248 GNLYSVDLDG----KDLRRHTNFT----DYYPRNANSDGKRIVF-----------QNAGDIYLYDPETDSLEKLDIGLPL 308 (668)
T ss_pred cceEEeccCC----chhhhcCCch----hccccccCCCCcEEEE-----------ecCCcEEEeCCCcCcceeeecCCcc
Confidence 4677888887 7888887554 34443 5889999999 5568999999998876665322 11
Q ss_pred c---ccccc---ccce-EEec-CCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhh
Q 004456 83 I---CLNAV---FGSF-VWVN-NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYY 154 (752)
Q Consensus 83 ~---~~~~~---~~~~-~wsp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 154 (752)
. ...-. ..-+ .+|+ +|..|++++.
T Consensus 309 ~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR------------------------------------------------ 340 (668)
T COG4946 309 DRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR------------------------------------------------ 340 (668)
T ss_pred ccccccccccCHHHhhhhhccCCCcEEEEEec------------------------------------------------
Confidence 0 00000 0011 1443 5777777643
Q ss_pred cccEEEEEcc-CCCccccCCccceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCC
Q 004456 155 TTAQLVLGSL-DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (752)
Q Consensus 155 ~~~~i~~~~~-~G~~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 233 (752)
++.|+++. +|-..++...+++.-..++-|++.++....+. ..+.+++.++++++++...-+.
T Consensus 341 --GkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dg------------D~l~iyd~~~~e~kr~e~~lg~--- 403 (668)
T COG4946 341 --GKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDG------------DKLGIYDKDGGEVKRIEKDLGN--- 403 (668)
T ss_pred --CcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCC------------ceEEEEecCCceEEEeeCCccc---
Confidence 68899999 66777888777788888888998887776664 2789999999998887766554
Q ss_pred CcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEee-cccceeeeeeecCCce
Q 004456 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFRSVSWCDDSLA 312 (752)
Q Consensus 234 ~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~~~~~~~~~~spDg~~ 312 (752)
+..+..|||||+ ++..+ .+..|+++|+ +++.++.+.. ..+-+..+.|||++++
T Consensus 404 ----------I~av~vs~dGK~-~vvaN------------dr~el~vidi---dngnv~~idkS~~~lItdf~~~~nsr~ 457 (668)
T COG4946 404 ----------IEAVKVSPDGKK-VVVAN------------DRFELWVIDI---DNGNVRLIDKSEYGLITDFDWHPNSRW 457 (668)
T ss_pred ----------eEEEEEcCCCcE-EEEEc------------CceEEEEEEe---cCCCeeEecccccceeEEEEEcCCcee
Confidence 778999999997 65553 5668999999 6778887764 4456789999999999
Q ss_pred EEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeee
Q 004456 313 LVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (752)
Q Consensus 313 l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~ 373 (752)
|+|+-...--...|.++|+.+ ++.-.+|.....+ ..|. +.|||++|+|.+.+
T Consensus 458 iAYafP~gy~tq~Iklydm~~--~Kiy~vTT~ta~D-----fsPa--FD~d~ryLYfLs~R 509 (668)
T COG4946 458 IAYAFPEGYYTQSIKLYDMDG--GKIYDVTTPTAYD-----FSPA--FDPDGRYLYFLSAR 509 (668)
T ss_pred EEEecCcceeeeeEEEEecCC--CeEEEecCCcccc-----cCcc--cCCCCcEEEEEecc
Confidence 999875443445788999988 4555666555443 5666 69999999999875
No 54
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.71 E-value=5.5e-16 Score=161.58 Aligned_cols=303 Identities=17% Similarity=0.192 Sum_probs=187.8
Q ss_pred CCcceeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCC
Q 004456 2 PFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (752)
Q Consensus 2 ~~~~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~ 81 (752)
++...++++++.. ++.++|+.. ......+.|||||++|||+.. .+||+.+..+++.++||...
T Consensus 20 s~~~~y~i~d~~~----~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~~-----------~nly~~~~~~~~~~~lT~dg 82 (353)
T PF00930_consen 20 SFKGDYYIYDIET----GEITPLTPP--PPKLQDAKWSPDGKYIAFVRD-----------NNLYLRDLATGQETQLTTDG 82 (353)
T ss_dssp EEEEEEEEEETTT----TEEEESS-E--ETTBSEEEE-SSSTEEEEEET-----------TEEEEESSTTSEEEESES--
T ss_pred ccceeEEEEecCC----CceEECcCC--ccccccceeecCCCeeEEEec-----------CceEEEECCCCCeEEecccc
Confidence 4567899999988 888888732 346899999999999999753 79999999999999999866
Q ss_pred Cccc-cc------------cccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhh
Q 004456 82 DICL-NA------------VFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDE 148 (752)
Q Consensus 82 ~~~~-~~------------~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 148 (752)
...+ ++ ....+-|||||++|+|...+.+........ .....+. . ......+.|+.-|
T Consensus 83 ~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~-------~~~~~~~-~--yp~~~~~~YPk~G 152 (353)
T PF00930_consen 83 EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLP-------DYSPPDS-Q--YPEVESIRYPKAG 152 (353)
T ss_dssp TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEE-------EESSSTE-S--S-EEEEEE--BTT
T ss_pred ceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEee-------ccCCccc-c--CCcccccccCCCC
Confidence 2211 10 123678999999999986544333110000 0000000 0 0000111122111
Q ss_pred hhhhhhcccEEEEEcc-CCCccccC-------CccceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCce
Q 004456 149 SLFDYYTTAQLVLGSL-DGTAKDFG-------TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (752)
Q Consensus 149 ~~~~~~~~~~i~~~~~-~G~~~~l~-------~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (752)
... ....|+++++ +|+...+. ....+..+.|++|+++|++....+... ...+.+.|..++.
T Consensus 153 ~~n---p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~--------~~~l~~~d~~tg~ 221 (353)
T PF00930_consen 153 DPN---PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQN--------RLDLVLCDASTGE 221 (353)
T ss_dssp S------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTST--------EEEEEEEEECTTT
T ss_pred CcC---CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCC--------EEEEEEEECCCCc
Confidence 100 2368999999 55543332 115667999999999888876664322 1356777887665
Q ss_pred eEEecCCCCCCCCCcccCCccccccceeee-eCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeeccc
Q 004456 221 VRELCDLPPAEDIPVCYNSVREGMRSISWR-ADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL 299 (752)
Q Consensus 221 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~ws-pDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 299 (752)
.+.+.... .+.++ .....+.|. ++|.. +++++..+ +-.+|+.++. +++.++.|+.+..
T Consensus 222 ~~~~~~e~----~~~Wv----~~~~~~~~~~~~~~~-~l~~s~~~---------G~~hly~~~~---~~~~~~~lT~G~~ 280 (353)
T PF00930_consen 222 TRVVLEET----SDGWV----DVYDPPHFLGPDGNE-FLWISERD---------GYRHLYLYDL---DGGKPRQLTSGDW 280 (353)
T ss_dssp CEEEEEEE----SSSSS----SSSSEEEE-TTTSSE-EEEEEETT---------SSEEEEEEET---TSSEEEESS-SSS
T ss_pred eeEEEEec----CCcce----eeecccccccCCCCE-EEEEEEcC---------CCcEEEEEcc---cccceeccccCce
Confidence 54443111 11111 112245555 88888 77776433 2338999998 6777889999998
Q ss_pred ceee-eeeecCCceEEEeeecc-cCceeEEEEcCC-CCCccceeccccccccccCCCCCCceeeCCCCCeEEEeee
Q 004456 300 RFRS-VSWCDDSLALVNETWYK-TSQTRTWLVCPG-SKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (752)
Q Consensus 300 ~~~~-~~~spDg~~l~~~~~~~-~~~~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~ 372 (752)
.+.. +.|+++++.|+|.+... +...+||+++++ + ++.+.|+...... ...++||||++++....
T Consensus 281 ~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~--~~~~~LT~~~~~~-------~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 281 EVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG--GEPKCLTCEDGDH-------YSASFSPDGKYYVDTYS 347 (353)
T ss_dssp -EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET--TEEEESSTTSSTT-------EEEEE-TTSSEEEEEEE
T ss_pred eecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC--CCeEeccCCCCCc-------eEEEECCCCCEEEEEEc
Confidence 8854 67999999999988653 467899999999 6 5778888765432 12568999999988763
No 55
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.70 E-value=8e-15 Score=145.73 Aligned_cols=342 Identities=11% Similarity=0.095 Sum_probs=172.7
Q ss_pred CCCceeecCCCCC---ceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEE
Q 004456 18 LGPEKEVHGYPDG---AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVW 94 (752)
Q Consensus 18 ~g~~~~i~~~~~~---~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~w 94 (752)
+-+.+|||..+.. ..-.++.|.+||++|+|.+. .++..+||++|+++++.+|||..++.. .....+
T Consensus 20 G~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~-------~dg~~nly~lDL~t~~i~QLTdg~g~~----~~g~~~ 88 (386)
T PF14583_consen 20 GHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASD-------FDGNRNLYLLDLATGEITQLTDGPGDN----TFGGFL 88 (386)
T ss_dssp --EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE--------TTSS-EEEEEETTT-EEEE---SS-B-----TTT-EE
T ss_pred CceEEEecCCCCcccceeecCCCcCCCCCEEEEEec-------cCCCcceEEEEcccCEEEECccCCCCC----ccceEE
Confidence 3577888854321 14567999999999999654 367899999999999999999887521 235688
Q ss_pred ecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCccccCC
Q 004456 95 VNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT 173 (752)
Q Consensus 95 spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~~l~~ 173 (752)
||+++.|+|.-. ..+|+.+++ +++.+.+..
T Consensus 89 s~~~~~~~Yv~~-------------------------------------------------~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 89 SPDDRALYYVKN-------------------------------------------------GRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp -TTSSEEEEEET-------------------------------------------------TTEEEEEETTT--EEEEEE
T ss_pred ecCCCeEEEEEC-------------------------------------------------CCeEEEEECCcCcEEEEEE
Confidence 999999988621 147899999 556555543
Q ss_pred c--cc--eeccccCCCCceEEEEecccCcccc-ccc--------cCccccEEEEecCCceeEEecCCCCCCCCCcccCCc
Q 004456 174 P--AV--YTAVEPSPDQKYVLITSMHRPYSYK-VPC--------ARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (752)
Q Consensus 174 ~--~~--~~~~~~SpDGk~l~~~~~~~~~~~~-~~~--------~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (752)
. .. +.....+.|+..++........-.. ..+ ..-...|...|+.+++.+.+.....-
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~w---------- 189 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDW---------- 189 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-----------
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCcc----------
Confidence 3 22 2233346678888776543321110 001 11236788899999988887765533
Q ss_pred cccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecc--cceeeeeeecCCceEEEeee
Q 004456 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD--LRFRSVSWCDDSLALVNETW 318 (752)
Q Consensus 241 ~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~--~~~~~~~~spDg~~l~~~~~ 318 (752)
...+.+||.--..|.|+-.. +-. .-..+|+.++. +++..+.+.... ..++.--|+|||..|.|.+.
T Consensus 190 ---lgH~~fsP~dp~li~fCHEG--pw~----~Vd~RiW~i~~---dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~ 257 (386)
T PF14583_consen 190 ---LGHVQFSPTDPTLIMFCHEG--PWD----LVDQRIWTINT---DGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSY 257 (386)
T ss_dssp ---EEEEEEETTEEEEEEEEE-S---TT----TSS-SEEEEET---TS---EESS---TTEEEEEEEE-TTSS-EEEEEE
T ss_pred ---ccCcccCCCCCCEEEEeccC--Ccc----eeceEEEEEEc---CCCcceeeecCCCCcccccccccCCCCEEEEEee
Confidence 33678888666547776322 111 11238899998 677777765332 23455569999999999764
Q ss_pred cc-cCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCee
Q 004456 319 YK-TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFL 397 (752)
Q Consensus 319 ~~-~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l 397 (752)
.. +...-|..+++.++ +.+.+.......- +--|+||+.++--..+ ....+-...|..- ...+.|
T Consensus 258 ~~~~~~~~i~~~d~~t~--~~~~~~~~p~~~H--------~~ss~Dg~L~vGDG~d----~p~~v~~~~~~~~-~~~p~i 322 (386)
T PF14583_consen 258 TPGGQDFWIAGYDPDTG--ERRRLMEMPWCSH--------FMSSPDGKLFVGDGGD----APVDVADAGGYKI-ENDPWI 322 (386)
T ss_dssp ETTT--EEEEEE-TTT----EEEEEEE-SEEE--------EEE-TTSSEEEEEE------------------------EE
T ss_pred cCCCCceEEEeeCCCCC--CceEEEeCCceee--------eEEcCCCCEEEecCCC----CCcccccccccee-cCCcEE
Confidence 23 33456888999884 4344433322211 3358999866543311 1111111122221 235689
Q ss_pred EEEecCCCceeEEeeccchhhh--hceeeeecCCcceecccCCCEEEEEEecCCCCcEEEEEECC
Q 004456 398 DLFDINTGSKERIWESNREKYF--ETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWP 460 (752)
Q Consensus 398 ~~~d~~~g~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~ 460 (752)
|++++++++...|..-+.. |. .+-.+. ..-.++|||||++|+|.... ..++.||.+++.
T Consensus 323 ~~~~~~~~~~~~l~~h~~s-w~v~~~~~q~--~hPhp~FSPDgk~VlF~Sd~-~G~~~vY~v~i~ 383 (386)
T PF14583_consen 323 YLFDVEAGRFRKLARHDTS-WKVLDGDRQV--THPHPSFSPDGKWVLFRSDM-EGPPAVYLVEIP 383 (386)
T ss_dssp EEEETTTTEEEEEEE--------BTTBSST--T----EE-TTSSEEEEEE-T-TSS-EEEEEE--
T ss_pred EEeccccCceeeeeeccCc-ceeecCCCcc--CCCCCccCCCCCEEEEECCC-CCCccEEEEeCc
Confidence 9999998888777553311 10 000000 12358999999999998655 557889998864
No 56
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.70 E-value=3.1e-15 Score=150.25 Aligned_cols=231 Identities=20% Similarity=0.213 Sum_probs=158.7
Q ss_pred ceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEe
Q 004456 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (752)
Q Consensus 481 ~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~ 560 (752)
...+..+.+.++..+....+.+.. . +..+||++||.+ .+...+..++..|.++||.|++
T Consensus 8 ~~~~~~~~~~d~~~~~~~~~~~~~-----~-~~g~Vvl~HG~~---------------Eh~~ry~~la~~l~~~G~~V~~ 66 (298)
T COG2267 8 TRTEGYFTGADGTRLRYRTWAAPE-----P-PKGVVVLVHGLG---------------EHSGRYEELADDLAARGFDVYA 66 (298)
T ss_pred ccccceeecCCCceEEEEeecCCC-----C-CCcEEEEecCch---------------HHHHHHHHHHHHHHhCCCEEEE
Confidence 345556667899999999998765 1 237999999962 2334444567899999999999
Q ss_pred cCCCCCCCCCCCC-CC---chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004456 561 GPSIPIIGEGDKL-PN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (752)
Q Consensus 561 ~~~~~~~g~g~~~-~~---~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~ 636 (752)
.|.+|+|.+. .. ...+...+.|+.+.++.+.+.. -..+++|+||||||.+++.++.+.+..+.++|+.+|+
T Consensus 67 ---~D~RGhG~S~r~~rg~~~~f~~~~~dl~~~~~~~~~~~--~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~ 141 (298)
T COG2267 67 ---LDLRGHGRSPRGQRGHVDSFADYVDDLDAFVETIAEPD--PGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPA 141 (298)
T ss_pred ---ecCCCCCCCCCCCcCCchhHHHHHHHHHHHHHHHhccC--CCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECcc
Confidence 7788888875 22 2235566777777777776541 2368999999999999999999999999999999998
Q ss_pred CCCCC--C-----------------ccCccc----cccchhh--hHH--HHHhcCh-----------------------h
Q 004456 637 YNKTL--T-----------------PFGFQT----EFRTLWE--ATN--VYIEMSP-----------------------I 666 (752)
Q Consensus 637 ~~~~~--~-----------------~~~~~~----~~~~~~~--~~~--~~~~~~~-----------------------~ 666 (752)
..... . .+.... ....-+. +++ .....+| .
T Consensus 142 ~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~sr~~~~~~~~~~dP~~~~~~~~~~w~~~~~~a~~~~~~ 221 (298)
T COG2267 142 LGLGGAILRLILARLALKLLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAYEADPLIGVGGPVSRWVDLALLAGRVPAL 221 (298)
T ss_pred ccCChhHHHHHHHHHhcccccccccccccCcccccCcCcchhhcCHHHHHHHhcCCccccCCccHHHHHHHHHhhcccch
Confidence 76441 0 001111 0000000 000 0001111 1
Q ss_pred hhcCCCCCCEEEEEeCCCCCCCCCH-HHHHHHHHHHHhCCCc-EEEEEeCCCCccCCccccH--HHHHHHHHHHHHHHhc
Q 004456 667 THANKIKKPILIIHGEVDDKVGLFP-MQAERFFDALKGHGAL-SRLVLLPFEHHVYAARENV--MHVIWETDRWLQKYCL 742 (752)
Q Consensus 667 ~~~~~~~~P~li~~G~~D~~v~~~~-~~~~~~~~~l~~~~~~-~~~~~~~~~~H~~~~~~~~--~~~~~~~~~fl~~~l~ 742 (752)
.....+++|+|+++|++|.+|+ . ....++++ ..+.+ .++++|+++.|....+... +++++.+.+||.+++.
T Consensus 222 ~~~~~~~~PvLll~g~~D~vv~--~~~~~~~~~~---~~~~~~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~~ 296 (298)
T COG2267 222 RDAPAIALPVLLLQGGDDRVVD--NVEGLARFFE---RAGSPDKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEALP 296 (298)
T ss_pred hccccccCCEEEEecCCCcccc--CcHHHHHHHH---hcCCCCceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhcc
Confidence 1244568999999999999986 3 33344444 44433 6899999999998877777 8999999999999874
No 57
>COG4099 Predicted peptidase [General function prediction only]
Probab=99.68 E-value=3.4e-16 Score=145.44 Aligned_cols=211 Identities=19% Similarity=0.219 Sum_probs=134.6
Q ss_pred CCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCC
Q 004456 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 569 (752)
Q Consensus 490 ~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~ 569 (752)
..|.++...+|.|+++.+.++ -+|+|||+||+|..+.....++..+ .+ ..+-..-+.+|-|+++.+-.....
T Consensus 169 ~tgneLkYrly~Pkdy~pdkk-y~PLvlfLHgagq~g~dn~~~l~sg------~g-aiawa~pedqcfVlAPQy~~if~d 240 (387)
T COG4099 169 STGNELKYRLYTPKDYAPDKK-YYPLVLFLHGAGQGGSDNDKVLSSG------IG-AIAWAGPEDQCFVLAPQYNPIFAD 240 (387)
T ss_pred ccCceeeEEEecccccCCCCc-cccEEEEEecCCCCCchhhhhhhcC------cc-ceeeecccCceEEEcccccccccc
Confidence 467799999999999988765 2499999999875533222211111 00 001111123455555332111111
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccc
Q 004456 570 GDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTE 649 (752)
Q Consensus 570 g~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~ 649 (752)
.++ ........-+..+.+.|.++..||.+||.++|.|+||++++.++.+.|+.|++++.+||--+.
T Consensus 241 ~e~----~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~---------- 306 (387)
T COG4099 241 SEE----KTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDR---------- 306 (387)
T ss_pred ccc----ccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCch----------
Confidence 111 111222222333445788889999999999999999999999999999999999999984331
Q ss_pred ccchhhhHHHHHhcChhhhcCCC-CCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCC---CCccCCcccc
Q 004456 650 FRTLWEATNVYIEMSPITHANKI-KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPF---EHHVYAAREN 725 (752)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~-~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~H~~~~~~~ 725 (752)
+..++.+ +.|++++|+.+|.++| .++++-+++.|...+.++.+..|.. ..|+......
T Consensus 307 ----------------v~lv~~lk~~piWvfhs~dDkv~P--v~nSrv~y~~lk~~~~kv~Ytaf~~g~~~~eG~d~~g~ 368 (387)
T COG4099 307 ----------------VYLVRTLKKAPIWVFHSSDDKVIP--VSNSRVLYERLKALDRKVNYTAFLEGTTVLEGVDHSGV 368 (387)
T ss_pred ----------------hhhhhhhccCceEEEEecCCCccc--cCcceeehHHHHhhccccchhhhhhccccccccCCCCc
Confidence 1112222 5899999999999999 9999999999999888777666651 1233222211
Q ss_pred H--HHHHHHHHHHHHHH
Q 004456 726 V--MHVIWETDRWLQKY 740 (752)
Q Consensus 726 ~--~~~~~~~~~fl~~~ 740 (752)
+ ....+++.+||-++
T Consensus 369 w~atyn~~eaieWLl~Q 385 (387)
T COG4099 369 WWATYNDAEAIEWLLKQ 385 (387)
T ss_pred ceeecCCHHHHHHHHhc
Confidence 2 22345678887653
No 58
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.68 E-value=8.7e-16 Score=154.89 Aligned_cols=228 Identities=17% Similarity=0.196 Sum_probs=136.2
Q ss_pred CCCceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCc-hhHHHHHhCCc
Q 004456 478 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP-TSSLIFLARRF 556 (752)
Q Consensus 478 ~~~~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~G~ 556 (752)
.+...+.++|+-.+ ..|.+++.+|++ .++.|+||++-|.. .+..-.. .+..+|+.+|+
T Consensus 161 ~~~~i~~v~iP~eg-~~I~g~LhlP~~-----~~p~P~VIv~gGlD---------------s~qeD~~~l~~~~l~~rGi 219 (411)
T PF06500_consen 161 SDYPIEEVEIPFEG-KTIPGYLHLPSG-----EKPYPTVIVCGGLD---------------SLQEDLYRLFRDYLAPRGI 219 (411)
T ss_dssp SSSEEEEEEEEETT-CEEEEEEEESSS-----SS-EEEEEEE--TT---------------S-GGGGHHHHHCCCHHCT-
T ss_pred CCCCcEEEEEeeCC-cEEEEEEEcCCC-----CCCCCEEEEeCCcc---------------hhHHHHHHHHHHHHHhCCC
Confidence 45679999999755 799999999985 45799999987742 1111111 22335788999
Q ss_pred EEEecCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004456 557 AVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (752)
Q Consensus 557 ~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~ 636 (752)
++++ .+.+|.|.+.... .-.+.-.-..++++||.+.+.+|..||+++|.|+||++|.++|..++++++++|+.+|+
T Consensus 220 A~Lt---vDmPG~G~s~~~~-l~~D~~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~ 295 (411)
T PF06500_consen 220 AMLT---VDMPGQGESPKWP-LTQDSSRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAP 295 (411)
T ss_dssp EEEE---E--TTSGGGTTT--S-S-CCHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES--
T ss_pred EEEE---EccCCCcccccCC-CCcCHHHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCch
Confidence 9999 4455555542211 00111122347889999999999999999999999999999999888899999999987
Q ss_pred CCCCCCccC----cccccc-----------chhh-hHHHHHhcChhh--hc--CCCCCCEEEEEeCCCCCCCCCHHHHHH
Q 004456 637 YNKTLTPFG----FQTEFR-----------TLWE-ATNVYIEMSPIT--HA--NKIKKPILIIHGEVDDKVGLFPMQAER 696 (752)
Q Consensus 637 ~~~~~~~~~----~~~~~~-----------~~~~-~~~~~~~~~~~~--~~--~~~~~P~li~~G~~D~~v~~~~~~~~~ 696 (752)
....+.... .+.... ..++ .......+|... -+ .+..+|+|.+.|++|+++| .++.+-
T Consensus 296 vh~~ft~~~~~~~~P~my~d~LA~rlG~~~~~~~~l~~el~~~SLk~qGlL~~rr~~~plL~i~~~~D~v~P--~eD~~l 373 (411)
T PF06500_consen 296 VHHFFTDPEWQQRVPDMYLDVLASRLGMAAVSDESLRGELNKFSLKTQGLLSGRRCPTPLLAINGEDDPVSP--IEDSRL 373 (411)
T ss_dssp -SCGGH-HHHHTTS-HHHHHHHHHHCT-SCE-HHHHHHHGGGGSTTTTTTTTSS-BSS-EEEEEETT-SSS---HHHHHH
T ss_pred HhhhhccHHHHhcCCHHHHHHHHHHhCCccCCHHHHHHHHHhcCcchhccccCCCCCcceEEeecCCCCCCC--HHHHHH
Confidence 553322111 000000 0000 011123333322 12 4567899999999999998 776543
Q ss_pred HHHHHHhCCCcEEEEEeCCCC-ccCCccccHHHHHHHHHHHHHHHh
Q 004456 697 FFDALKGHGALSRLVLLPFEH-HVYAARENVMHVIWETDRWLQKYC 741 (752)
Q Consensus 697 ~~~~l~~~~~~~~~~~~~~~~-H~~~~~~~~~~~~~~~~~fl~~~l 741 (752)
+ ...+.+-+...++... |. ........+.+||++.|
T Consensus 374 i----a~~s~~gk~~~~~~~~~~~-----gy~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 374 I----AESSTDGKALRIPSKPLHM-----GYPQALDEIYKWLEDKL 410 (411)
T ss_dssp H----HHTBTT-EEEEE-SSSHHH-----HHHHHHHHHHHHHHHHH
T ss_pred H----HhcCCCCceeecCCCcccc-----chHHHHHHHHHHHHHhc
Confidence 3 3334444666666543 43 34578889999999876
No 59
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=99.66 E-value=4.5e-14 Score=158.88 Aligned_cols=194 Identities=23% Similarity=0.251 Sum_probs=142.7
Q ss_pred hhHHHHHhCCcEEEecCCCCCCCCCCCCCCch-hHHHHHHHHHHHHHHHHHcC--CCC------------CCcEEEEEeC
Q 004456 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDR-FVEQLVSSAEAAVEEVVRRG--VAD------------PSRIAVGGHS 610 (752)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~-~~~~~~~d~~~~~~~l~~~~--~~d------------~~~i~l~G~S 610 (752)
.....|+.+||+|+. .+.+|.|.+.+... ......+|..++|+||..+. +.| ..||+++|.|
T Consensus 270 ~~~~~~~~rGYaVV~---~D~RGtg~SeG~~~~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~S 346 (767)
T PRK05371 270 SLNDYFLPRGFAVVY---VSGIGTRGSDGCPTTGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGKS 346 (767)
T ss_pred hHHHHHHhCCeEEEE---EcCCCCCCCCCcCccCCHHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEEc
Confidence 456789999999999 55667666644322 33678899999999999542 223 4799999999
Q ss_pred hHHHHHHHHHHhCCCceeEEEEccCCCCCCCC---------ccCcccccc---------------------chhh-----
Q 004456 611 YGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT---------PFGFQTEFR---------------------TLWE----- 655 (752)
Q Consensus 611 ~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~---------~~~~~~~~~---------------------~~~~----- 655 (752)
|||++++.+|+..|..++++|..+++.++... +.++..+.. ..+.
T Consensus 347 Y~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~~r~~~~~~~~~~~~~~~~~~~~ 426 (767)
T PRK05371 347 YLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTYSRNLLAGDYLRHNEACEKLLAE 426 (767)
T ss_pred HHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhhhcccCcchhhcchHHHHHHHhh
Confidence 99999999999988899999999988653210 011100000 0000
Q ss_pred -----------hHHHHHhcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccc
Q 004456 656 -----------ATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARE 724 (752)
Q Consensus 656 -----------~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~ 724 (752)
..+.|...+++.+++++++|+|++||..|.+|+ +.++.++++++++.+.+.++.+.++ +|......
T Consensus 427 ~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~--~~~s~~ly~aL~~~g~pkkL~l~~g-~H~~~~~~ 503 (767)
T PRK05371 427 LTAAQDRKTGDYNDFWDDRNYLKDADKIKASVLVVHGLNDWNVK--PKQVYQWWDALPENGVPKKLFLHQG-GHVYPNNW 503 (767)
T ss_pred hhhhhhhcCCCccHHHHhCCHhhHhhCCCCCEEEEeeCCCCCCC--hHHHHHHHHHHHhcCCCeEEEEeCC-CccCCCch
Confidence 011234456677788999999999999999998 8999999999999888888877765 68755444
Q ss_pred cHHHHHHHHHHHHHHHhcCCC
Q 004456 725 NVMHVIWETDRWLQKYCLSNT 745 (752)
Q Consensus 725 ~~~~~~~~~~~fl~~~l~~~~ 745 (752)
....+.+.+.+||+++|.+..
T Consensus 504 ~~~d~~e~~~~Wfd~~LkG~~ 524 (767)
T PRK05371 504 QSIDFRDTMNAWFTHKLLGID 524 (767)
T ss_pred hHHHHHHHHHHHHHhccccCC
Confidence 456788899999999998754
No 60
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.66 E-value=3.9e-15 Score=143.95 Aligned_cols=131 Identities=30% Similarity=0.323 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCccccccchhhhHHHH
Q 004456 581 QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVY 660 (752)
Q Consensus 581 ~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (752)
...+.+.+.++...+.. ++++||+++|+|+||+|++.++.+.|+.+.++|+++|........
T Consensus 85 ~s~~~l~~li~~~~~~~-i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~~----------------- 146 (216)
T PF02230_consen 85 ESAERLDELIDEEVAYG-IDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESEL----------------- 146 (216)
T ss_dssp HHHHHHHHHHHHHHHTT---GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCCC-----------------
T ss_pred HHHHHHHHHHHHHHHcC-CChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeeccccccccc-----------------
Confidence 33444555555555544 899999999999999999999999999999999999864311000
Q ss_pred HhcChhhhcCC-CCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHHH
Q 004456 661 IEMSPITHANK-IKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 739 (752)
Q Consensus 661 ~~~~~~~~~~~-~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 739 (752)
...... -++|++++||..|+++| ...+++.++.|++.+.+++++.|+++||.+. .+.+..+.+||++
T Consensus 147 -----~~~~~~~~~~pi~~~hG~~D~vvp--~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~-----~~~~~~~~~~l~~ 214 (216)
T PF02230_consen 147 -----EDRPEALAKTPILIIHGDEDPVVP--FEWAEKTAEFLKAAGANVEFHEYPGGGHEIS-----PEELRDLREFLEK 214 (216)
T ss_dssp -----HCCHCCCCTS-EEEEEETT-SSST--HHHHHHHHHHHHCTT-GEEEEEETT-SSS-------HHHHHHHHHHHHH
T ss_pred -----cccccccCCCcEEEEecCCCCccc--HHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-----HHHHHHHHHHHhh
Confidence 000111 16899999999999999 9999999999999999999999999999875 3667889999998
Q ss_pred Hh
Q 004456 740 YC 741 (752)
Q Consensus 740 ~l 741 (752)
++
T Consensus 215 ~~ 216 (216)
T PF02230_consen 215 HI 216 (216)
T ss_dssp H-
T ss_pred hC
Confidence 74
No 61
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.66 E-value=1.9e-15 Score=145.73 Aligned_cols=190 Identities=18% Similarity=0.123 Sum_probs=115.4
Q ss_pred EEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCC--C
Q 004456 497 ATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKL--P 574 (752)
Q Consensus 497 ~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~--~ 574 (752)
+++|+|++. .++.|+||++||++.... .+.. ...+...+.+.||.|++++.++..+.+... .
T Consensus 1 ~~ly~P~~~----~~~~P~vv~lHG~~~~~~-----------~~~~-~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~ 64 (212)
T TIGR01840 1 MYVYVPAGL----TGPRALVLALHGCGQTAS-----------AYVI-DWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWF 64 (212)
T ss_pred CEEEcCCCC----CCCCCEEEEeCCCCCCHH-----------HHhh-hcChHHHHHhCCeEEEecCCcCccccCCCCCCC
Confidence 368899874 235899999999763321 1110 001233445689999996654322111110 0
Q ss_pred -C--chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCcccccc
Q 004456 575 -N--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFR 651 (752)
Q Consensus 575 -~--~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~ 651 (752)
. .........++.++++++.++..+|++||+|+||||||++++.+++++|+.|++++.+++..-.............
T Consensus 65 ~~~~~~~~~~~~~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~ 144 (212)
T TIGR01840 65 FTHHRARGTGEVESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEASSSISATPQM 144 (212)
T ss_pred CccccCCCCccHHHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccccchhhHhhc
Confidence 0 0111234677888999999887899999999999999999999999999999999988875321000000000000
Q ss_pred chhhhHHHHHhcC-h-hhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhC
Q 004456 652 TLWEATNVYIEMS-P-ITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGH 704 (752)
Q Consensus 652 ~~~~~~~~~~~~~-~-~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~ 704 (752)
..-.....+.+.. . ........+|++|+||++|.+|| +..++++++++++.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~hG~~D~vVp--~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 145 CTAATAASVCRLVRGMQSEYNGPTPIMSVVHGDADYTVL--PGNADEIRDAMLKV 197 (212)
T ss_pred CCCCCHHHHHHHHhccCCcccCCCCeEEEEEcCCCceeC--cchHHHHHHHHHHh
Confidence 0000111111100 0 01112234567899999999999 99999999998875
No 62
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=99.65 E-value=4.5e-16 Score=153.69 Aligned_cols=221 Identities=19% Similarity=0.262 Sum_probs=117.6
Q ss_pred cCCCceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCccc---CCCCccCCCCchhHHHHHh
Q 004456 477 LASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR---GSPNEFSGMTPTSSLIFLA 553 (752)
Q Consensus 477 ~~~~~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~ 553 (752)
.+.+..|.+.|...++..+.++++.|++. +++.|.||++||.+.......+... ............++..|+.
T Consensus 83 rdGY~~EKv~f~~~p~~~vpaylLvPd~~----~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk 158 (390)
T PF12715_consen 83 RDGYTREKVEFNTTPGSRVPAYLLVPDGA----KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAK 158 (390)
T ss_dssp ETTEEEEEEEE--STTB-EEEEEEEETT------S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHT
T ss_pred cCCeEEEEEEEEccCCeeEEEEEEecCCC----CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHh
Confidence 45678999999999999999999999984 4679999999997543211110000 0001122223346889999
Q ss_pred CCcEEEecCCCCCCCCCCCCC------C----------------chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeCh
Q 004456 554 RRFAVLAGPSIPIIGEGDKLP------N----------------DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSY 611 (752)
Q Consensus 554 ~G~~v~~~~~~~~~g~g~~~~------~----------------~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~ 611 (752)
+||+|++++. .|+|+... . ..+.....-|...+++||.+++.+|++||+++|+||
T Consensus 159 ~GYVvla~D~---~g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSm 235 (390)
T PF12715_consen 159 RGYVVLAPDA---LGFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSM 235 (390)
T ss_dssp TTSEEEEE-----TTSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGG
T ss_pred CCCEEEEEcc---ccccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecc
Confidence 9999999554 34443311 0 011122346777899999999999999999999999
Q ss_pred HHHHHHHHHHhCCCceeEEEEccCCCCCCC--Ccc---------Ccccc----ccchhhhHHHHHhcChhhhcCC-CCCC
Q 004456 612 GAFMTAHLLAHAPHLFCCGIARSGSYNKTL--TPF---------GFQTE----FRTLWEATNVYIEMSPITHANK-IKKP 675 (752)
Q Consensus 612 GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~--~~~---------~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~P 675 (752)
||+.++++++.. ++++++|+.+-+..... ..+ +++.. ....|...+.- . + ++- ...|
T Consensus 236 Gg~~a~~LaALD-dRIka~v~~~~l~~~~~~~~~mt~~~~~~~~~~~~~~~~~iPgl~r~~D~P-d---I--asliAPRP 308 (390)
T PF12715_consen 236 GGYRAWWLAALD-DRIKATVANGYLCTTQERALLMTMPNNNGLRGFPNCICNYIPGLWRYFDFP-D---I--ASLIAPRP 308 (390)
T ss_dssp GHHHHHHHHHH--TT--EEEEES-B--HHHHHHHB----TTS----SS-GGG--TTCCCC--HH-H---H--HHTTTTS-
T ss_pred cHHHHHHHHHcc-hhhHhHhhhhhhhccchhhHhhccccccccCcCcchhhhhCccHHhhCccH-H---H--HHHhCCCc
Confidence 999999999998 67888887654321100 000 00000 00011100000 0 0 011 1479
Q ss_pred EEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCC
Q 004456 676 ILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFE 716 (752)
Q Consensus 676 ~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 716 (752)
+|++.|..|..+| . .++.|+.. ....++++..||+.
T Consensus 309 ll~~nG~~Dklf~--i--V~~AY~~~-~~p~n~~~~~~p~~ 344 (390)
T PF12715_consen 309 LLFENGGKDKLFP--I--VRRAYAIM-GAPDNFQIHHYPKF 344 (390)
T ss_dssp EEESS-B-HHHHH--H--HHHHHHHT-T-GGGEEE---GGG
T ss_pred chhhcCCcccccH--H--HHHHHHhc-CCCcceEEeecccc
Confidence 9999999998865 3 44444443 33457888888853
No 63
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.64 E-value=1.9e-14 Score=148.42 Aligned_cols=236 Identities=15% Similarity=0.147 Sum_probs=146.5
Q ss_pred EEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccC-------------CCCccCCCCchhHHHHHh
Q 004456 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRG-------------SPNEFSGMTPTSSLIFLA 553 (752)
Q Consensus 487 ~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~ 553 (752)
+.+.+|..|..+.|.|+. +..+|+++||.+.-... ..++. .+..+..+...++..|.+
T Consensus 2 ~~~~~g~~l~~~~~~~~~-------~kg~v~i~HG~~eh~~~--~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~ 72 (332)
T TIGR01607 2 FRNKDGLLLKTYSWIVKN-------AIGIIVLIHGLKSHLRL--QFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNK 72 (332)
T ss_pred ccCCCCCeEEEeeeeccC-------CeEEEEEECCCchhhhh--hhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHH
Confidence 456788899999998853 36899999995311100 00000 000111111246789999
Q ss_pred CCcEEEecCCCCCCCCCCCCCC---c---hhHHHHHHHHHHHHHHHHHc------------------CCCCCCcEEEEEe
Q 004456 554 RRFAVLAGPSIPIIGEGDKLPN---D---RFVEQLVSSAEAAVEEVVRR------------------GVADPSRIAVGGH 609 (752)
Q Consensus 554 ~G~~v~~~~~~~~~g~g~~~~~---~---~~~~~~~~d~~~~~~~l~~~------------------~~~d~~~i~l~G~ 609 (752)
+||.|++ .+.+|+|.+... . ..+...++|+.+.++.+++. .+-...+++|+||
T Consensus 73 ~G~~V~~---~D~rGHG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~Gh 149 (332)
T TIGR01607 73 NGYSVYG---LDLQGHGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGL 149 (332)
T ss_pred CCCcEEE---ecccccCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeec
Confidence 9999999 666777765432 1 24567788888888887652 1111357999999
Q ss_pred ChHHHHHHHHHHhCCC--------ceeEEEEccCCCCCCCC--------c------------c--Cccccc-----cchh
Q 004456 610 SYGAFMTAHLLAHAPH--------LFCCGIARSGSYNKTLT--------P------------F--GFQTEF-----RTLW 654 (752)
Q Consensus 610 S~GG~~a~~~~~~~p~--------~~~~~v~~~~~~~~~~~--------~------------~--~~~~~~-----~~~~ 654 (752)
||||.+++.++...++ .++++|+.+|....... . + .+.... ..+.
T Consensus 150 SmGg~i~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~ 229 (332)
T TIGR01607 150 SMGGNIALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYEKSPY 229 (332)
T ss_pred cCccHHHHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccccChh
Confidence 9999999998875432 58888888876421100 0 0 000000 0000
Q ss_pred h------hH------------HHHHhc-C-hhhhcCCC--CCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEE
Q 004456 655 E------AT------------NVYIEM-S-PITHANKI--KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVL 712 (752)
Q Consensus 655 ~------~~------------~~~~~~-~-~~~~~~~~--~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~ 712 (752)
. ++ ..+... . ....+.++ ++|+|++||++|.+++ +..++.+++++.. ..+++++
T Consensus 230 ~~~~~~~Dp~~~~~~~s~~~~~~l~~~~~~~~~~~~~i~~~~P~Lii~G~~D~vv~--~~~~~~~~~~~~~--~~~~l~~ 305 (332)
T TIGR01607 230 VNDIIKFDKFRYDGGITFNLASELIKATDTLDCDIDYIPKDIPILFIHSKGDCVCS--YEGTVSFYNKLSI--SNKELHT 305 (332)
T ss_pred hhhHHhcCccccCCcccHHHHHHHHHHHHHHHhhHhhCCCCCCEEEEEeCCCCccC--HHHHHHHHHhccC--CCcEEEE
Confidence 0 00 000000 0 01123344 6899999999999998 8888877776543 3468899
Q ss_pred eCCCCccCCccccHHHHHHHHHHHHH
Q 004456 713 LPFEHHVYAARENVMHVIWETDRWLQ 738 (752)
Q Consensus 713 ~~~~~H~~~~~~~~~~~~~~~~~fl~ 738 (752)
+++++|.+......+++++.+.+||+
T Consensus 306 ~~g~~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 306 LEDMDHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred ECCCCCCCccCCCHHHHHHHHHHHhh
Confidence 99999998866667889999999985
No 64
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.64 E-value=5.4e-15 Score=148.38 Aligned_cols=194 Identities=17% Similarity=0.190 Sum_probs=123.9
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCCc---hhHHHHHHHHHHH
Q 004456 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAA 589 (752)
Q Consensus 513 ~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~ 589 (752)
.|+||++||.+.. .. .+........++|.|++ .+.+|+|.+.... .......+++.+.
T Consensus 13 ~~~iv~lhG~~~~-----------~~-----~~~~~~~~l~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~~~~~ 73 (257)
T TIGR03611 13 APVVVLSSGLGGS-----------GS-----YWAPQLDVLTQRFHVVT---YDHRGTGRSPGELPPGYSIAHMADDVLQL 73 (257)
T ss_pred CCEEEEEcCCCcc-----------hh-----HHHHHHHHHHhccEEEE---EcCCCCCCCCCCCcccCCHHHHHHHHHHH
Confidence 6899999995311 01 11222233456899999 5566777664321 2234445555555
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCcc-------------C-----------
Q 004456 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPF-------------G----------- 645 (752)
Q Consensus 590 ~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~~-------------~----------- 645 (752)
++.+ +..++.++||||||++++.++.++|+.++++|++++......... .
T Consensus 74 i~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (257)
T TIGR03611 74 LDAL------NIERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALF 147 (257)
T ss_pred HHHh------CCCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhh
Confidence 5443 246899999999999999999999999999998887543210000 0
Q ss_pred -cc----cccc-----------c-------hhhhHHHHHhcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHH
Q 004456 646 -FQ----TEFR-----------T-------LWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALK 702 (752)
Q Consensus 646 -~~----~~~~-----------~-------~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~ 702 (752)
.. .... . .......+...+....+.++++|+|+++|++|..+| +..++++++.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~--~~~~~~~~~~~~ 225 (257)
T TIGR03611 148 LYPADWISENAARLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVP--YTQSLRLAAALP 225 (257)
T ss_pred hccccHhhccchhhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcccCccEEEEecCcCcccC--HHHHHHHHHhcC
Confidence 00 0000 0 000001111122334466788999999999999998 888877776553
Q ss_pred hCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHH
Q 004456 703 GHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 738 (752)
Q Consensus 703 ~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 738 (752)
..++++++++||.+. .+.+..+.+.+.+||+
T Consensus 226 ----~~~~~~~~~~gH~~~-~~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 226 ----NAQLKLLPYGGHASN-VTDPETFNRALLDFLK 256 (257)
T ss_pred ----CceEEEECCCCCCcc-ccCHHHHHHHHHHHhc
Confidence 347889999999875 5677888888999985
No 65
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=99.63 E-value=1.9e-14 Score=148.11 Aligned_cols=225 Identities=18% Similarity=0.183 Sum_probs=151.6
Q ss_pred EcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCC
Q 004456 488 QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPII 567 (752)
Q Consensus 488 ~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~ 567 (752)
....+..+.+.+|.|.. ....+.|+||++|||+|..++.. .. .......++..|+.|+.++|+-..
T Consensus 57 ~~~~~~~~~~~~y~p~~---~~~~~~p~vly~HGGg~~~g~~~--------~~---~~~~~~~~~~~g~~vv~vdYrlaP 122 (312)
T COG0657 57 AGPSGDGVPVRVYRPDR---KAAATAPVVLYLHGGGWVLGSLR--------TH---DALVARLAAAAGAVVVSVDYRLAP 122 (312)
T ss_pred cCCCCCceeEEEECCCC---CCCCCCcEEEEEeCCeeeecChh--------hh---HHHHHHHHHHcCCEEEecCCCCCC
Confidence 33455568899999921 11335899999999987654322 11 113455666899999998885333
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCCC----ceeEEEEccCCCCCC
Q 004456 568 GEGDKLPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHAPH----LFCCGIARSGSYNKT 640 (752)
Q Consensus 568 g~g~~~~~~~~~~~~~~d~~~~~~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~~~~~p~----~~~~~v~~~~~~~~~ 640 (752)
. ..+...++|+.+++.|+.++. .+|+++|+|+|+|.||++++.++....+ ..++.++++|..+..
T Consensus 123 e--------~~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~ 194 (312)
T COG0657 123 E--------HPFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLT 194 (312)
T ss_pred C--------CCCCchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCc
Confidence 2 234566888999999999874 4899999999999999999999876532 468999999988765
Q ss_pred CCccCcc-ccccchhh-------hHHHHH---------hcChhhh--cCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHH
Q 004456 641 LTPFGFQ-TEFRTLWE-------ATNVYI---------EMSPITH--ANKIKKPILIIHGEVDDKVGLFPMQAERFFDAL 701 (752)
Q Consensus 641 ~~~~~~~-~~~~~~~~-------~~~~~~---------~~~~~~~--~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l 701 (752)
.....+. ......+. ....|. ..+|+.. +.. -+|+++++|+.|.+. .+++.+.++|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~spl~~~~~~~-lPP~~i~~a~~D~l~----~~~~~~a~~L 269 (312)
T COG0657 195 SSAASLPGYGEADLLDAAAILAWFADLYLGAAPDREDPEASPLASDDLSG-LPPTLIQTAEFDPLR----DEGEAYAERL 269 (312)
T ss_pred ccccchhhcCCccccCHHHHHHHHHHHhCcCccccCCCccCccccccccC-CCCEEEEecCCCcch----hHHHHHHHHH
Confidence 4110000 00000000 000111 1223222 222 489999999999984 4888999999
Q ss_pred HhCCCcEEEEEeCCCCccCCccc--cHHHHHHHHHHHHHH
Q 004456 702 KGHGALSRLVLLPFEHHVYAARE--NVMHVIWETDRWLQK 739 (752)
Q Consensus 702 ~~~~~~~~~~~~~~~~H~~~~~~--~~~~~~~~~~~fl~~ 739 (752)
++.|++++++.++++.|.|.... .....+..+.+|+..
T Consensus 270 ~~agv~~~~~~~~g~~H~f~~~~~~~a~~~~~~~~~~l~~ 309 (312)
T COG0657 270 RAAGVPVELRVYPGMIHGFDLLTGPEARSALRQIAAFLRA 309 (312)
T ss_pred HHcCCeEEEEEeCCcceeccccCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999874332 244556677777764
No 66
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.63 E-value=1.1e-14 Score=148.38 Aligned_cols=198 Identities=12% Similarity=0.055 Sum_probs=124.1
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCCch---hHHHHHHHHHHH
Q 004456 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDR---FVEQLVSSAEAA 589 (752)
Q Consensus 513 ~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~---~~~~~~~d~~~~ 589 (752)
.|.||++||.+... ..|.. .......+++.||.|++ .+.+|+|.+..... ......+|+.++
T Consensus 30 ~~~ivllHG~~~~~-----------~~~~~-~~~~~~~l~~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~l~~~ 94 (282)
T TIGR03343 30 GEAVIMLHGGGPGA-----------GGWSN-YYRNIGPFVDAGYRVIL---KDSPGFNKSDAVVMDEQRGLVNARAVKGL 94 (282)
T ss_pred CCeEEEECCCCCch-----------hhHHH-HHHHHHHHHhCCCEEEE---ECCCCCCCCCCCcCcccccchhHHHHHHH
Confidence 46799999964211 11111 01123456778999999 56677777754321 111223444444
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCC--CCccC----------------------
Q 004456 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT--LTPFG---------------------- 645 (752)
Q Consensus 590 ~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~--~~~~~---------------------- 645 (752)
++.+ +.++++++||||||++++.++.++|++++++|++++..... .....
T Consensus 95 l~~l------~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (282)
T TIGR03343 95 MDAL------DIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQM 168 (282)
T ss_pred HHHc------CCCCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHH
Confidence 4333 34789999999999999999999999999999988742100 00000
Q ss_pred -----ccccc------cchhh----hHH---HHHh---------cChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHH
Q 004456 646 -----FQTEF------RTLWE----ATN---VYIE---------MSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFF 698 (752)
Q Consensus 646 -----~~~~~------~~~~~----~~~---~~~~---------~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~ 698 (752)
+.... ...|. .+. .+.. .+....+.++++|+|+++|++|..++ +..++++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~--~~~~~~~~ 246 (282)
T TIGR03343 169 LNVFLFDQSLITEELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVP--LDHGLKLL 246 (282)
T ss_pred HhhCccCcccCcHHHHHhHHHHhhcCHHHHHHHHHhccccccccchHHHHHhhCCCCEEEEEccCCCcCC--chhHHHHH
Confidence 00000 00000 000 0000 01112356788999999999999998 77777776
Q ss_pred HHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHH
Q 004456 699 DALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 738 (752)
Q Consensus 699 ~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 738 (752)
+.+. ++++++++++||... .+.+..+.+.+.+||.
T Consensus 247 ~~~~----~~~~~~i~~agH~~~-~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 247 WNMP----DAQLHVFSRCGHWAQ-WEHADAFNRLVIDFLR 281 (282)
T ss_pred HhCC----CCEEEEeCCCCcCCc-ccCHHHHHHHHHHHhh
Confidence 6553 468999999999865 6778888899999985
No 67
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.62 E-value=2.2e-14 Score=147.32 Aligned_cols=225 Identities=16% Similarity=0.143 Sum_probs=134.8
Q ss_pred ceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEe
Q 004456 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (752)
Q Consensus 481 ~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~ 560 (752)
....+.+...+|..+..... ..+ .+..|.||++||.+. ....+..+...|.++||.|++
T Consensus 20 ~~~~~~~~~~~~~~~~i~y~-~~G-----~~~~~~lvliHG~~~---------------~~~~w~~~~~~L~~~gy~vi~ 78 (302)
T PRK00870 20 APHYVDVDDGDGGPLRMHYV-DEG-----PADGPPVLLLHGEPS---------------WSYLYRKMIPILAAAGHRVIA 78 (302)
T ss_pred CceeEeecCCCCceEEEEEE-ecC-----CCCCCEEEEECCCCC---------------chhhHHHHHHHHHhCCCEEEE
Confidence 45556666545554442222 222 112478999999531 111122345567778999999
Q ss_pred cCCCCCCCCCCCCCCc----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004456 561 GPSIPIIGEGDKLPND----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (752)
Q Consensus 561 ~~~~~~~g~g~~~~~~----~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~ 636 (752)
.+.+|+|.+.... .......+|+.+.++.+ +.+++.++||||||.+++.++.++|++++++|++++.
T Consensus 79 ---~Dl~G~G~S~~~~~~~~~~~~~~a~~l~~~l~~l------~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 149 (302)
T PRK00870 79 ---PDLIGFGRSDKPTRREDYTYARHVEWMRSWFEQL------DLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTG 149 (302)
T ss_pred ---ECCCCCCCCCCCCCcccCCHHHHHHHHHHHHHHc------CCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCC
Confidence 6677888774322 12344445444444332 2368999999999999999999999999999988763
Q ss_pred CCCCCC--c-----cC-c--cc-----------cccchh--hhHHHH----------------Hhc---C----------
Q 004456 637 YNKTLT--P-----FG-F--QT-----------EFRTLW--EATNVY----------------IEM---S---------- 664 (752)
Q Consensus 637 ~~~~~~--~-----~~-~--~~-----------~~~~~~--~~~~~~----------------~~~---~---------- 664 (752)
...... . +. + .. ...... .....+ ... .
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (302)
T PRK00870 150 LPTGDGPMPDAFWAWRAFSQYSPVLPVGRLVNGGTVRDLSDAVRAAYDAPFPDESYKAGARAFPLLVPTSPDDPAVAANR 229 (302)
T ss_pred CCCccccchHHHhhhhcccccCchhhHHHHhhccccccCCHHHHHHhhcccCChhhhcchhhhhhcCCCCCCCcchHHHH
Confidence 210000 0 00 0 00 000000 000000 000 0
Q ss_pred -hhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHHHH
Q 004456 665 -PITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 740 (752)
Q Consensus 665 -~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 740 (752)
....+.++++|+|+++|+.|..+| ... +.+...+.+. ....+++++++||... .+.++.+...+.+||+++
T Consensus 230 ~~~~~l~~i~~P~lii~G~~D~~~~--~~~-~~~~~~~~~~-~~~~~~~i~~~gH~~~-~e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 230 AAWAVLERWDKPFLTAFSDSDPITG--GGD-AILQKRIPGA-AGQPHPTIKGAGHFLQ-EDSGEELAEAVLEFIRAT 301 (302)
T ss_pred HHHHhhhcCCCceEEEecCCCCccc--Cch-HHHHhhcccc-cccceeeecCCCccch-hhChHHHHHHHHHHHhcC
Confidence 012346788999999999999988 654 5565555432 1134788999999875 677889999999999765
No 68
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.62 E-value=3.2e-14 Score=142.91 Aligned_cols=229 Identities=14% Similarity=0.088 Sum_probs=143.5
Q ss_pred EEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecC
Q 004456 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 562 (752)
Q Consensus 483 ~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~ 562 (752)
+.+.|.. +|..+.++++.|.+. ..+.||++|||+... .+ .......++..|+++||.|++
T Consensus 3 ~~~~~~~-~~~~l~g~~~~p~~~------~~~~vv~i~gg~~~~-------~g----~~~~~~~la~~l~~~G~~v~~-- 62 (274)
T TIGR03100 3 RALTFSC-EGETLVGVLHIPGAS------HTTGVLIVVGGPQYR-------VG----SHRQFVLLARRLAEAGFPVLR-- 62 (274)
T ss_pred eeEEEEc-CCcEEEEEEEcCCCC------CCCeEEEEeCCcccc-------CC----chhHHHHHHHHHHHCCCEEEE--
Confidence 4577775 567899999999651 135677777753110 00 011112356788899999999
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC
Q 004456 563 SIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT 642 (752)
Q Consensus 563 ~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~ 642 (752)
++.+|+|.+...........+|+.+++++++++.. ..++|+++|||+||.+++.++... .+++++|+++|.......
T Consensus 63 -~Dl~G~G~S~~~~~~~~~~~~d~~~~~~~l~~~~~-g~~~i~l~G~S~Gg~~a~~~a~~~-~~v~~lil~~p~~~~~~~ 139 (274)
T TIGR03100 63 -FDYRGMGDSEGENLGFEGIDADIAAAIDAFREAAP-HLRRIVAWGLCDAASAALLYAPAD-LRVAGLVLLNPWVRTEAA 139 (274)
T ss_pred -eCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECHHHHHHHHHhhhC-CCccEEEEECCccCCccc
Confidence 56678887654433455678899999999987521 236799999999999999987654 689999999987431110
Q ss_pred ccC--c----c--ccccchhhh-----------HHHHHh----c---Ch-----------hhhcCCCCCCEEEEEeCCCC
Q 004456 643 PFG--F----Q--TEFRTLWEA-----------TNVYIE----M---SP-----------ITHANKIKKPILIIHGEVDD 685 (752)
Q Consensus 643 ~~~--~----~--~~~~~~~~~-----------~~~~~~----~---~~-----------~~~~~~~~~P~li~~G~~D~ 685 (752)
... . . ......|.. ...+.. . .+ ...+.++++|+|+++|..|.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~ll~~g~~D~ 219 (274)
T TIGR03100 140 QAASRIRHYYLGQLLSADFWRKLLSGEVNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLERFQGPVLFILSGNDL 219 (274)
T ss_pred chHHHHHHHHHHHHhChHHHHHhcCCCccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHhcCCcEEEEEcCcch
Confidence 000 0 0 000011110 000110 1 00 11234668999999999997
Q ss_pred CCCCCHHHH-----HHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHH
Q 004456 686 KVGLFPMQA-----ERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 738 (752)
Q Consensus 686 ~v~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 738 (752)
..+ .... ..+.+.+.. ..++++.+++++|.+.....+.++.+.+.+||+
T Consensus 220 ~~~--~~~~~~~~~~~~~~~l~~--~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~ 273 (274)
T TIGR03100 220 TAQ--EFADSVLGEPAWRGALED--PGIERVEIDGADHTFSDRVWREWVAARTTEWLR 273 (274)
T ss_pred hHH--HHHHHhccChhhHHHhhc--CCeEEEecCCCCcccccHHHHHHHHHHHHHHHh
Confidence 643 1110 222222221 457899999999988767777889999999995
No 69
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.61 E-value=2e-14 Score=158.90 Aligned_cols=131 Identities=20% Similarity=0.301 Sum_probs=99.7
Q ss_pred EcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCC
Q 004456 488 QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPII 567 (752)
Q Consensus 488 ~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~ 567 (752)
+..||.+|.+.+++|++ .++.|+||++||.+.... + ........+..|+++||+|++ .+.+
T Consensus 2 ~~~DG~~L~~~~~~P~~-----~~~~P~Il~~~gyg~~~~----~-------~~~~~~~~~~~l~~~Gy~vv~---~D~R 62 (550)
T TIGR00976 2 PMRDGTRLAIDVYRPAG-----GGPVPVILSRTPYGKDAG----L-------RWGLDKTEPAWFVAQGYAVVI---QDTR 62 (550)
T ss_pred cCCCCCEEEEEEEecCC-----CCCCCEEEEecCCCCchh----h-------ccccccccHHHHHhCCcEEEE---Eecc
Confidence 45689999999999975 235899999998542110 0 000111235678999999999 5556
Q ss_pred CCCCCCCCchhH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCC
Q 004456 568 GEGDKLPNDRFV-EQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (752)
Q Consensus 568 g~g~~~~~~~~~-~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~ 638 (752)
|+|.+....... ....+|+.++++|+.+++..+ .+|+++|+||||++++.++..+|..++++|..++..+
T Consensus 63 G~g~S~g~~~~~~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d 133 (550)
T TIGR00976 63 GRGASEGEFDLLGSDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWD 133 (550)
T ss_pred ccccCCCceEecCcccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccc
Confidence 777664432222 567899999999999997765 6999999999999999999999899999999888765
No 70
>PLN02511 hydrolase
Probab=99.61 E-value=2.3e-14 Score=150.91 Aligned_cols=238 Identities=12% Similarity=0.113 Sum_probs=145.4
Q ss_pred CceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEE
Q 004456 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (752)
Q Consensus 480 ~~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (752)
+..++..+...||..+....+.+..... ....|+||++||.+. +.. ..+....+..+.++||.|+
T Consensus 69 ~~~~re~l~~~DG~~~~ldw~~~~~~~~--~~~~p~vvllHG~~g-----------~s~--~~y~~~~~~~~~~~g~~vv 133 (388)
T PLN02511 69 VRYRRECLRTPDGGAVALDWVSGDDRAL--PADAPVLILLPGLTG-----------GSD--DSYVRHMLLRARSKGWRVV 133 (388)
T ss_pred CceeEEEEECCCCCEEEEEecCcccccC--CCCCCEEEEECCCCC-----------CCC--CHHHHHHHHHHHHCCCEEE
Confidence 3445556666788777755443321111 123699999999531 111 1111124456678999999
Q ss_pred ecCCCCCCCCCCCCCC--chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc--eeEEEEccC
Q 004456 560 AGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL--FCCGIARSG 635 (752)
Q Consensus 560 ~~~~~~~~g~g~~~~~--~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~--~~~~v~~~~ 635 (752)
+ .+.+|+|.+... ..+.....+|+.++++++..+. ...++.++||||||.+++.++.++|+. +++++++++
T Consensus 134 ~---~d~rG~G~s~~~~~~~~~~~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~ 208 (388)
T PLN02511 134 V---FNSRGCADSPVTTPQFYSASFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCN 208 (388)
T ss_pred E---EecCCCCCCCCCCcCEEcCCchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECC
Confidence 9 556677765322 2223455789999999998763 235899999999999999999999876 778887776
Q ss_pred CCCCCCCc----cCc--------c----c--c------------c--------cch--h-----------hh-HHHHHhc
Q 004456 636 SYNKTLTP----FGF--------Q----T--E------------F--------RTL--W-----------EA-TNVYIEM 663 (752)
Q Consensus 636 ~~~~~~~~----~~~--------~----~--~------------~--------~~~--~-----------~~-~~~~~~~ 663 (752)
..+..... .++ . . . . ... + .. .+.|...
T Consensus 209 p~~l~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~~~~~yy~~~ 288 (388)
T PLN02511 209 PFDLVIADEDFHKGFNNVYDKALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFKSVDAYYSNS 288 (388)
T ss_pred CcCHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCCCHHHHHHHc
Confidence 54421000 000 0 0 0 0 000 0 00 0112334
Q ss_pred ChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHH------HHHHHHHHH
Q 004456 664 SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMH------VIWETDRWL 737 (752)
Q Consensus 664 ~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~------~~~~~~~fl 737 (752)
++...++++++|+|+++|++|+++| ..... ..+......+++++++++||....+ .+.. ..+.+.+||
T Consensus 289 s~~~~L~~I~vPtLiI~g~dDpi~p--~~~~~---~~~~~~~p~~~l~~~~~gGH~~~~E-~p~~~~~~~w~~~~i~~Fl 362 (388)
T PLN02511 289 SSSDSIKHVRVPLLCIQAANDPIAP--ARGIP---REDIKANPNCLLIVTPSGGHLGWVA-GPEAPFGAPWTDPVVMEFL 362 (388)
T ss_pred CchhhhccCCCCeEEEEcCCCCcCC--cccCc---HhHHhcCCCEEEEECCCcceecccc-CCCCCCCCccHHHHHHHHH
Confidence 4555678899999999999999988 44321 1122233568999999999975532 2221 356788898
Q ss_pred HHHhcC
Q 004456 738 QKYCLS 743 (752)
Q Consensus 738 ~~~l~~ 743 (752)
+.....
T Consensus 363 ~~~~~~ 368 (388)
T PLN02511 363 EALEEG 368 (388)
T ss_pred HHHHHh
Confidence 877644
No 71
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.61 E-value=1.4e-13 Score=132.81 Aligned_cols=199 Identities=17% Similarity=0.173 Sum_probs=133.2
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCCch----hHHHHHHHHHH
Q 004456 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDR----FVEQLVSSAEA 588 (752)
Q Consensus 513 ~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~----~~~~~~~d~~~ 588 (752)
.|+|+++||.| ..++.++ .....|+++||+|++ .|.+|+|.+..+.. ....+..|+..
T Consensus 44 gP~illlHGfP--------------e~wyswr-~q~~~la~~~~rviA---~DlrGyG~Sd~P~~~~~Yt~~~l~~di~~ 105 (322)
T KOG4178|consen 44 GPIVLLLHGFP--------------ESWYSWR-HQIPGLASRGYRVIA---PDLRGYGFSDAPPHISEYTIDELVGDIVA 105 (322)
T ss_pred CCEEEEEccCC--------------ccchhhh-hhhhhhhhcceEEEe---cCCCCCCCCCCCCCcceeeHHHHHHHHHH
Confidence 69999999965 3333322 345588999999999 77889998877654 34566777777
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCC--------CCCCcc-------Cccc----c
Q 004456 589 AVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN--------KTLTPF-------GFQT----E 649 (752)
Q Consensus 589 ~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~--------~~~~~~-------~~~~----~ 649 (752)
.++.|. .+|+.++||+||+.+|..++..+|+++++.|+...... .....+ .++. +
T Consensus 106 lld~Lg------~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~~p~~~~~~~~~~~f~~~~y~~~fQ~~~~~E 179 (322)
T KOG4178|consen 106 LLDHLG------LKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFPNPKLKPLDSSKAIFGKSYYICLFQEPGKPE 179 (322)
T ss_pred HHHHhc------cceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCCCcccchhhhhccccCccceeEeccccCcch
Confidence 776664 37999999999999999999999999999998875432 000000 0000 0
Q ss_pred -------------------------------ccchh---hhHH-------------------HHHhcCh--hhhcCCCCC
Q 004456 650 -------------------------------FRTLW---EATN-------------------VYIEMSP--ITHANKIKK 674 (752)
Q Consensus 650 -------------------------------~~~~~---~~~~-------------------~~~~~~~--~~~~~~~~~ 674 (752)
....| ++.+ .+....+ .....++++
T Consensus 180 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g~~gplNyyrn~~r~w~a~~~~~~~i~i 259 (322)
T KOG4178|consen 180 TELSKDDTEMLVKTFRTRKTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDGFTGPLNYYRNFRRNWEAAPWALAKITI 259 (322)
T ss_pred hhhccchhHHhHHhhhccccCCccccCCCCCCccchhhHHHHHHHHhccccccccccchhhHHHhhCchhcccccccccc
Confidence 00011 1111 1122221 223456789
Q ss_pred CEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHHHH
Q 004456 675 PILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 740 (752)
Q Consensus 675 P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 740 (752)
|++++.|..|...+ +..-.+.+++.... ..+.++++++||... .+.++++.+.+++||.+.
T Consensus 260 Pv~fi~G~~D~v~~--~p~~~~~~rk~vp~--l~~~vv~~~~gH~vq-qe~p~~v~~~i~~f~~~~ 320 (322)
T KOG4178|consen 260 PVLFIWGDLDPVLP--YPIFGELYRKDVPR--LTERVVIEGIGHFVQ-QEKPQEVNQAILGFINSF 320 (322)
T ss_pred ceEEEEecCccccc--chhHHHHHHHhhcc--ccceEEecCCccccc-ccCHHHHHHHHHHHHHhh
Confidence 99999999999987 44222233332211 236788999999766 788999999999999874
No 72
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.61 E-value=5.6e-14 Score=135.71 Aligned_cols=271 Identities=13% Similarity=0.144 Sum_probs=169.2
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCc--ceeccCCCCccccccccceEEecCCcEEEEEecCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~--~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~ 109 (752)
.+.+..|||+|||||.++. +...-||.+..++.- .+.+..+.. .|..+.||||+++|+.-..
T Consensus 226 EVWfl~FS~nGkyLAsaSk--------D~Taiiw~v~~d~~~kl~~tlvgh~~-----~V~yi~wSPDdryLlaCg~--- 289 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASK--------DSTAIIWIVVYDVHFKLKKTLVGHSQ-----PVSYIMWSPDDRYLLACGF--- 289 (519)
T ss_pred cEEEEEEcCCCeeEeeccC--------CceEEEEEEecCcceeeeeeeecccC-----ceEEEEECCCCCeEEecCc---
Confidence 4899999999999999865 445678887766541 222322221 4778899999998875311
Q ss_pred CCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCccccCCc---cceeccccCCC
Q 004456 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP---AVYTAVEPSPD 185 (752)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~~l~~~---~~~~~~~~SpD 185 (752)
.-.++++|+ +|+.+..-.. ....+.+|-||
T Consensus 290 ----------------------------------------------~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pD 323 (519)
T KOG0293|consen 290 ----------------------------------------------DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPD 323 (519)
T ss_pred ----------------------------------------------hHheeeccCCcchhhhhcccCcCCCcceeEEccC
Confidence 024888899 7765555433 46779999999
Q ss_pred CceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccC
Q 004456 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (752)
Q Consensus 186 Gk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~ 265 (752)
|.+++..+.++ .+..|++++.....-.... .| -+.+++.++||++ ++.+.
T Consensus 324 g~~~V~Gs~dr-------------~i~~wdlDgn~~~~W~gvr----~~--------~v~dlait~Dgk~-vl~v~---- 373 (519)
T KOG0293|consen 324 GFRFVTGSPDR-------------TIIMWDLDGNILGNWEGVR----DP--------KVHDLAITYDGKY-VLLVT---- 373 (519)
T ss_pred CceeEecCCCC-------------cEEEecCCcchhhcccccc----cc--------eeEEEEEcCCCcE-EEEEe----
Confidence 99988776553 7899999987532211111 11 1568999999999 55553
Q ss_pred CCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccc
Q 004456 266 GDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV 345 (752)
Q Consensus 266 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 345 (752)
...++.+++. +...-+.+......+.+++.|.||+.++... ....+..+|++.. +.+....
T Consensus 374 --------~d~~i~l~~~---e~~~dr~lise~~~its~~iS~d~k~~LvnL----~~qei~LWDl~e~----~lv~kY~ 434 (519)
T KOG0293|consen 374 --------VDKKIRLYNR---EARVDRGLISEEQPITSFSISKDGKLALVNL----QDQEIHLWDLEEN----KLVRKYF 434 (519)
T ss_pred --------cccceeeech---hhhhhhccccccCceeEEEEcCCCcEEEEEc----ccCeeEEeecchh----hHHHHhh
Confidence 2236777777 4445555777888899999999999888865 3335777777653 2222211
Q ss_pred cccccCCCCCCce--eeC-CCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeeccchhhhhce
Q 004456 346 FENVYSDPGSPMM--TRT-STGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETA 422 (752)
Q Consensus 346 ~~~~~~~~~~p~~--~~s-~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~ 422 (752)
...- +...+ +|. .+.+.++-.+. . ..||+|+..+|+.-.+..+... .+
T Consensus 435 Ghkq----~~fiIrSCFgg~~~~fiaSGSE-------------------D--~kvyIWhr~sgkll~~LsGHs~----~v 485 (519)
T KOG0293|consen 435 GHKQ----GHFIIRSCFGGGNDKFIASGSE-------------------D--SKVYIWHRISGKLLAVLSGHSK----TV 485 (519)
T ss_pred cccc----cceEEEeccCCCCcceEEecCC-------------------C--ceEEEEEccCCceeEeecCCcc----ee
Confidence 1110 11101 011 11122222221 1 1599999999887665544322 22
Q ss_pred eeeecCCcceecccCCCEEEEEEecCC
Q 004456 423 VALVFGQGEEDINLNQLKILTSKESKT 449 (752)
Q Consensus 423 ~~~~~~~~~~~~s~d~~~l~~~~~~~~ 449 (752)
.. ++|+|....++.++++.+
T Consensus 486 Nc-------VswNP~~p~m~ASasDDg 505 (519)
T KOG0293|consen 486 NC-------VSWNPADPEMFASASDDG 505 (519)
T ss_pred eE-------EecCCCCHHHhhccCCCC
Confidence 33 478888888776654433
No 73
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.61 E-value=1.2e-12 Score=134.54 Aligned_cols=273 Identities=11% Similarity=0.029 Sum_probs=161.2
Q ss_pred CcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchh
Q 004456 60 CKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTD 139 (752)
Q Consensus 60 ~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (752)
....|+++++++++..+...... .+..+.|+|||+.++++..
T Consensus 9 ~d~~v~~~d~~t~~~~~~~~~~~-----~~~~l~~~~dg~~l~~~~~--------------------------------- 50 (300)
T TIGR03866 9 KDNTISVIDTATLEVTRTFPVGQ-----RPRGITLSKDGKLLYVCAS--------------------------------- 50 (300)
T ss_pred CCCEEEEEECCCCceEEEEECCC-----CCCceEECCCCCEEEEEEC---------------------------------
Confidence 34689999998887655443322 2456899999998766521
Q ss_pred hccCChhhhhhhhhhcccEEEEEcc-CCCccc-cCCccceeccccCCCCceEEEEecccCccccccccCccccEEEEecC
Q 004456 140 NLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (752)
Q Consensus 140 ~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~~-l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (752)
....|+++++ +|+... +........+.|+|||+.|++..... ..+.+||+.
T Consensus 51 ---------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~------------~~l~~~d~~ 103 (300)
T TIGR03866 51 ---------------DSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDD------------NLVTVIDIE 103 (300)
T ss_pred ---------------CCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCC------------CeEEEEECC
Confidence 1157888888 554433 33334456789999999887764332 378999998
Q ss_pred CceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeec
Q 004456 218 GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL 297 (752)
Q Consensus 218 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 297 (752)
+.+......... .+..++|+|||+. ++.... ....++.++. .+.........
T Consensus 104 ~~~~~~~~~~~~-------------~~~~~~~~~dg~~-l~~~~~-----------~~~~~~~~d~---~~~~~~~~~~~ 155 (300)
T TIGR03866 104 TRKVLAEIPVGV-------------EPEGMAVSPDGKI-VVNTSE-----------TTNMAHFIDT---KTYEIVDNVLV 155 (300)
T ss_pred CCeEEeEeeCCC-------------CcceEEECCCCCE-EEEEec-----------CCCeEEEEeC---CCCeEEEEEEc
Confidence 764332221111 1456899999996 555431 1124555676 33333222223
Q ss_pred ccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCC-ceeeCCCCCeEEEeeeecCC
Q 004456 298 DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSP-MMTRTSTGTNVIAKIKKEND 376 (752)
Q Consensus 298 ~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-~~~~s~dg~~l~~~~~~~~~ 376 (752)
......++|+|||+.|+++... ...|+++++.++. ....+... ..........| .++|+|||+++++...
T Consensus 156 ~~~~~~~~~s~dg~~l~~~~~~---~~~v~i~d~~~~~-~~~~~~~~-~~~~~~~~~~~~~i~~s~dg~~~~~~~~---- 226 (300)
T TIGR03866 156 DQRPRFAEFTADGKELWVSSEI---GGTVSVIDVATRK-VIKKITFE-IPGVHPEAVQPVGIKLTKDGKTAFVALG---- 226 (300)
T ss_pred CCCccEEEECCCCCEEEEEcCC---CCEEEEEEcCcce-eeeeeeec-ccccccccCCccceEECCCCCEEEEEcC----
Confidence 3345668899999988776422 2358888988741 11222111 00000000111 2568999998766541
Q ss_pred cceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeeccchhhhhceeeeecCCcceecccCCCEEEEEEecCCCCcEEEE
Q 004456 377 EQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHI 456 (752)
Q Consensus 377 ~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~ 456 (752)
....|.+||+.+++......... .+ ..++|+|||+.|+.... ....|.+
T Consensus 227 ----------------~~~~i~v~d~~~~~~~~~~~~~~-----~~-------~~~~~~~~g~~l~~~~~---~~~~i~v 275 (300)
T TIGR03866 227 ----------------PANRVAVVDAKTYEVLDYLLVGQ-----RV-------WQLAFTPDEKYLLTTNG---VSNDVSV 275 (300)
T ss_pred ----------------CCCeEEEEECCCCcEEEEEEeCC-----Cc-------ceEEECCCCCEEEEEcC---CCCeEEE
Confidence 12258899998887654322111 11 23589999998865532 2346999
Q ss_pred EECCCCCee
Q 004456 457 LSWPLKKSS 465 (752)
Q Consensus 457 ~d~~~g~~~ 465 (752)
+|+.+++..
T Consensus 276 ~d~~~~~~~ 284 (300)
T TIGR03866 276 IDVAALKVI 284 (300)
T ss_pred EECCCCcEE
Confidence 999987753
No 74
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.60 E-value=1.6e-14 Score=130.73 Aligned_cols=145 Identities=26% Similarity=0.307 Sum_probs=105.6
Q ss_pred EEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 004456 515 CLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVV 594 (752)
Q Consensus 515 ~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~l~ 594 (752)
+||++||.+.. ... +..++..|+++||.|+.+ +.++.+.. ....++.++++++.
T Consensus 1 ~vv~~HG~~~~-----------~~~----~~~~~~~l~~~G~~v~~~---~~~~~~~~--------~~~~~~~~~~~~~~ 54 (145)
T PF12695_consen 1 VVVLLHGWGGS-----------RRD----YQPLAEALAEQGYAVVAF---DYPGHGDS--------DGADAVERVLADIR 54 (145)
T ss_dssp EEEEECTTTTT-----------THH----HHHHHHHHHHTTEEEEEE---SCTTSTTS--------HHSHHHHHHHHHHH
T ss_pred CEEEECCCCCC-----------HHH----HHHHHHHHHHCCCEEEEE---ecCCCCcc--------chhHHHHHHHHHHH
Confidence 58999996421 111 235677899999999994 44455443 11224555666653
Q ss_pred HcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCccccccchhhhHHHHHhcChhhhcCCCCC
Q 004456 595 RRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKK 674 (752)
Q Consensus 595 ~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (752)
+... +.++|+++|||+||.+++.++.+. .+++++|+++|..+ ...+.+.+.
T Consensus 55 ~~~~-~~~~i~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~~~---------------------------~~~~~~~~~ 105 (145)
T PF12695_consen 55 AGYP-DPDRIILIGHSMGGAIAANLAARN-PRVKAVVLLSPYPD---------------------------SEDLAKIRI 105 (145)
T ss_dssp HHHC-TCCEEEEEEETHHHHHHHHHHHHS-TTESEEEEESESSG---------------------------CHHHTTTTS
T ss_pred hhcC-CCCcEEEEEEccCcHHHHHHhhhc-cceeEEEEecCccc---------------------------hhhhhccCC
Confidence 3222 778999999999999999999998 68999999998210 112345678
Q ss_pred CEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCcc
Q 004456 675 PILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHV 719 (752)
Q Consensus 675 P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 719 (752)
|+|+++|++|..+| +++.++++++++ .+.+++++++++|+
T Consensus 106 pv~~i~g~~D~~~~--~~~~~~~~~~~~---~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 106 PVLFIHGENDPLVP--PEQVRRLYEALP---GPKELYIIPGAGHF 145 (145)
T ss_dssp EEEEEEETT-SSSH--HHHHHHHHHHHC---SSEEEEEETTS-TT
T ss_pred cEEEEEECCCCcCC--HHHHHHHHHHcC---CCcEEEEeCCCcCc
Confidence 99999999999998 899999888886 56799999999995
No 75
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.60 E-value=1.5e-13 Score=131.68 Aligned_cols=289 Identities=13% Similarity=0.114 Sum_probs=165.8
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (752)
-+-..+|||||++||-. +++..+.++|+.+..+.....+... =|..++|||||+.|+-.+.
T Consensus 117 ~Vl~~~fsp~g~~l~tG----------sGD~TvR~WD~~TeTp~~t~KgH~~----WVlcvawsPDgk~iASG~~----- 177 (480)
T KOG0271|consen 117 AVLSVQFSPTGSRLVTG----------SGDTTVRLWDLDTETPLFTCKGHKN----WVLCVAWSPDGKKIASGSK----- 177 (480)
T ss_pred cEEEEEecCCCceEEec----------CCCceEEeeccCCCCcceeecCCcc----EEEEEEECCCcchhhcccc-----
Confidence 46678999999999984 5667888888887765544333332 2558899999999986432
Q ss_pred CCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CC--CccccCCc-cceecccc-----
Q 004456 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--TAKDFGTP-AVYTAVEP----- 182 (752)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G--~~~~l~~~-~~~~~~~~----- 182 (752)
.+.|.+||. +| ..+.+..+ ..+..++|
T Consensus 178 --------------------------------------------dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl 213 (480)
T KOG0271|consen 178 --------------------------------------------DGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHL 213 (480)
T ss_pred --------------------------------------------CCeEEEecCCCCCcccccccCcccceeEEeeccccc
Confidence 268999998 66 44566655 66666555
Q ss_pred CCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCC-CCCC---------------------------
Q 004456 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA-EDIP--------------------------- 234 (752)
Q Consensus 183 SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~-~~~~--------------------------- 234 (752)
.|..++|+-.+.++ .+.+||+..+........... ...-
T Consensus 214 ~p~~r~las~skDg-------------~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~ 280 (480)
T KOG0271|consen 214 VPPCRRLASSSKDG-------------SVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKL 280 (480)
T ss_pred CCCccceecccCCC-------------CEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhH
Confidence 56778777766553 788999887654433222211 0000
Q ss_pred -cccCCccccccce-----------eeeeCCCceEE-EEE------------eccCCCCccccCccceEEeccCCCCCCC
Q 004456 235 -VCYNSVREGMRSI-----------SWRADKPSTLY-WVE------------AQDRGDANVEVSPRDIIYTQPAEPAEGE 289 (752)
Q Consensus 235 -~~~~~~~~~~~~~-----------~wspDG~~~l~-~~~------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 289 (752)
..+.++.-.+..+ +|.|-|++ .- +.+ ..+++..-........+++|+-. +..
T Consensus 281 ~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~-~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~--~~k 357 (480)
T KOG0271|consen 281 CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRK-PKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF--KSK 357 (480)
T ss_pred HHhhcccchheeeeeccchhhhhcccccccccc-CCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc--ccc
Confidence 0000000001111 11122211 00 000 00000000111223357777641 222
Q ss_pred -CCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEE
Q 004456 290 -KPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVI 368 (752)
Q Consensus 290 -~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~ 368 (752)
....++.....+..+.||||+++|+.++.+.+ +.+++..++ .-...+.+....+|. ++||.|.+.|+
T Consensus 358 kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS----VkLW~g~tG--k~lasfRGHv~~VYq------vawsaDsRLlV 425 (480)
T KOG0271|consen 358 KPITRMTGHQALVNHVSFSPDGRYIASASFDKS----VKLWDGRTG--KFLASFRGHVAAVYQ------VAWSADSRLLV 425 (480)
T ss_pred cchhhhhchhhheeeEEECCCccEEEEeecccc----eeeeeCCCc--chhhhhhhccceeEE------EEeccCccEEE
Confidence 23456666777899999999999999885553 666666664 222233334444443 78999999887
Q ss_pred EeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeeccchhhhhceeeeecCCcceecccCCCEEEE
Q 004456 369 AKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILT 443 (752)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~ 443 (752)
-.+.+. .|.+||+.+.++..-..... +.+..+ .|||||..++-
T Consensus 426 S~SkDs---------------------TLKvw~V~tkKl~~DLpGh~----DEVf~v-------DwspDG~rV~s 468 (480)
T KOG0271|consen 426 SGSKDS---------------------TLKVWDVRTKKLKQDLPGHA----DEVFAV-------DWSPDGQRVAS 468 (480)
T ss_pred EcCCCc---------------------eEEEEEeeeeeecccCCCCC----ceEEEE-------EecCCCceeec
Confidence 776432 58899998776643332221 134444 89999998743
No 76
>COG0400 Predicted esterase [General function prediction only]
Probab=99.60 E-value=8.3e-14 Score=129.56 Aligned_cols=128 Identities=25% Similarity=0.225 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCccccccchhhhHHHHH
Q 004456 582 LVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYI 661 (752)
Q Consensus 582 ~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (752)
..+.+.+.++.+.++..+|.+|++++|+|+|+++++.++.++|+.++++|+++|..-.....
T Consensus 79 ~~~~~~~~l~~~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~~~------------------ 140 (207)
T COG0400 79 ETEKLAEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEPEL------------------ 140 (207)
T ss_pred HHHHHHHHHHHHHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCCcc------------------
Confidence 34555666666667778999999999999999999999999999999999999964322110
Q ss_pred hcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHHHHh
Q 004456 662 EMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 741 (752)
Q Consensus 662 ~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 741 (752)
......+|+|++||+.|++|| ...+.++.+.|+..|.+++...++ +||.+.. ..++.+..|+.+.+
T Consensus 141 ------~~~~~~~pill~hG~~Dpvvp--~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~~-----e~~~~~~~wl~~~~ 206 (207)
T COG0400 141 ------LPDLAGTPILLSHGTEDPVVP--LALAEALAEYLTASGADVEVRWHE-GGHEIPP-----EELEAARSWLANTL 206 (207)
T ss_pred ------ccccCCCeEEEeccCcCCccC--HHHHHHHHHHHHHcCCCEEEEEec-CCCcCCH-----HHHHHHHHHHHhcc
Confidence 001235899999999999999 999999999999999999999999 7898753 45677788888754
No 77
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=99.59 E-value=1.4e-13 Score=137.57 Aligned_cols=235 Identities=14% Similarity=0.092 Sum_probs=157.8
Q ss_pred CceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHH-HhCCcEE
Q 004456 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIF-LARRFAV 558 (752)
Q Consensus 480 ~~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~G~~v 558 (752)
.....+.+.. ...+...+|+|....+. .+.|+|||+|||||-.+++.. ..+..+...+ .+.+.+|
T Consensus 61 v~~~dv~~~~--~~~l~vRly~P~~~~~~--~~~p~lvyfHGGGf~~~S~~~----------~~y~~~~~~~a~~~~~vv 126 (336)
T KOG1515|consen 61 VTSKDVTIDP--FTNLPVRLYRPTSSSSE--TKLPVLVYFHGGGFCLGSANS----------PAYDSFCTRLAAELNCVV 126 (336)
T ss_pred ceeeeeEecC--CCCeEEEEEcCCCCCcc--cCceEEEEEeCCccEeCCCCC----------chhHHHHHHHHHHcCeEE
Confidence 3455666653 44699999999875542 248999999999886543321 1222445555 4789999
Q ss_pred EecCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHc----CCCCCCcEEEEEeChHHHHHHHHHHhC------CCcee
Q 004456 559 LAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR----GVADPSRIAVGGHSYGAFMTAHLLAHA------PHLFC 628 (752)
Q Consensus 559 ~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~l~~~----~~~d~~~i~l~G~S~GG~~a~~~~~~~------p~~~~ 628 (752)
+.++||- +++..+...++|..+|+.|+.++ ..+|.+||+|+|-|.||.+|..++.+. +-.++
T Consensus 127 vSVdYRL--------APEh~~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~ 198 (336)
T KOG1515|consen 127 VSVDYRL--------APEHPFPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIK 198 (336)
T ss_pred EecCccc--------CCCCCCCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceE
Confidence 9988853 33445566788999999999885 458999999999999999999988653 24689
Q ss_pred EEEEccCCCCCCCCc---cC--ccccccchhhhHHHHHh--------------cChhh-h----c-CCCCCCEEEEEeCC
Q 004456 629 CGIARSGSYNKTLTP---FG--FQTEFRTLWEATNVYIE--------------MSPIT-H----A-NKIKKPILIIHGEV 683 (752)
Q Consensus 629 ~~v~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~--------------~~~~~-~----~-~~~~~P~li~~G~~ 683 (752)
+.|++.|++...... .. ........+.....+.+ .+|+. . . ...-+|+|++.++.
T Consensus 199 g~ili~P~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~w~~~lP~~~~~~~~p~~np~~~~~~~d~~~~~lp~tlv~~ag~ 278 (336)
T KOG1515|consen 199 GQILIYPFFQGTDRTESEKQQNLNGSPELARPKIDKWWRLLLPNGKTDLDHPFINPVGNSLAKDLSGLGLPPTLVVVAGY 278 (336)
T ss_pred EEEEEecccCCCCCCCHHHHHhhcCCcchhHHHHHHHHHHhCCCCCCCcCCccccccccccccCccccCCCceEEEEeCc
Confidence 999999986522111 00 00000011111111111 01222 0 1 11125799999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccc----cHHHHHHHHHHHHHHH
Q 004456 684 DDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARE----NVMHVIWETDRWLQKY 740 (752)
Q Consensus 684 D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~----~~~~~~~~~~~fl~~~ 740 (752)
|.+ ..++..+.++|+..|+++++..++++.|++.... ........+.+|+.+.
T Consensus 279 D~L----~D~~~~Y~~~Lkk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 279 DVL----RDEGLAYAEKLKKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred hhh----hhhhHHHHHHHHHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 987 5688899999999999999999999999865432 3456677788888754
No 78
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.59 E-value=7.4e-15 Score=142.23 Aligned_cols=181 Identities=20% Similarity=0.156 Sum_probs=121.6
Q ss_pred EEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHh-CCcEEEecCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 004456 516 LFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVV 594 (752)
Q Consensus 516 vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~l~ 594 (752)
||++|||+|..+.... ...++..+++ .|+.|+.++|+-. +...+...++|+.++++|+.
T Consensus 1 v~~~HGGg~~~g~~~~------------~~~~~~~la~~~g~~v~~~~Yrl~--------p~~~~p~~~~D~~~a~~~l~ 60 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKES------------HWPFAARLAAERGFVVVSIDYRLA--------PEAPFPAALEDVKAAYRWLL 60 (211)
T ss_dssp EEEE--STTTSCGTTT------------HHHHHHHHHHHHTSEEEEEE---T--------TTSSTTHHHHHHHHHHHHHH
T ss_pred CEEECCcccccCChHH------------HHHHHHHHHhhccEEEEEeecccc--------ccccccccccccccceeeec
Confidence 7999999886543221 1345666665 9999999887532 22345678999999999999
Q ss_pred Hc---CCCCCCcEEEEEeChHHHHHHHHHHhCCC----ceeEEEEccCCCCC-CCCccCcc----ccccchh------hh
Q 004456 595 RR---GVADPSRIAVGGHSYGAFMTAHLLAHAPH----LFCCGIARSGSYNK-TLTPFGFQ----TEFRTLW------EA 656 (752)
Q Consensus 595 ~~---~~~d~~~i~l~G~S~GG~~a~~~~~~~p~----~~~~~v~~~~~~~~-~~~~~~~~----~~~~~~~------~~ 656 (752)
++ ..+|.++|+|+|+|.||++++.++....+ .++++++++|..+. ........ ......+ ..
T Consensus 61 ~~~~~~~~d~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (211)
T PF07859_consen 61 KNADKLGIDPERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDGPSYDDSNENKDDPFLPAPKIDWF 140 (211)
T ss_dssp HTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSCHHHHHHHHHSTTSSSBHHHHHHH
T ss_pred cccccccccccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhcccccccccccccccccccccccccc
Confidence 87 24788999999999999999999875422 48999999998775 21111000 0000000 00
Q ss_pred HHHHH--------hcChhhhcCCC--CCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 004456 657 TNVYI--------EMSPITHANKI--KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYA 721 (752)
Q Consensus 657 ~~~~~--------~~~~~~~~~~~--~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 721 (752)
...+. ..+|+.. ... -+|+++++|+.|.+ ..++..++++|++.|+++++++++++.|.+.
T Consensus 141 ~~~~~~~~~~~~~~~sp~~~-~~~~~~Pp~~i~~g~~D~l----~~~~~~~~~~L~~~gv~v~~~~~~g~~H~f~ 210 (211)
T PF07859_consen 141 WKLYLPGSDRDDPLASPLNA-SDLKGLPPTLIIHGEDDVL----VDDSLRFAEKLKKAGVDVELHVYPGMPHGFF 210 (211)
T ss_dssp HHHHHSTGGTTSTTTSGGGS-SCCTTCHEEEEEEETTSTT----HHHHHHHHHHHHHTT-EEEEEEETTEETTGG
T ss_pred cccccccccccccccccccc-cccccCCCeeeeccccccc----hHHHHHHHHHHHHCCCCEEEEEECCCeEEee
Confidence 11111 1234433 122 36999999999976 5688999999999999999999999999863
No 79
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.59 E-value=9.5e-14 Score=139.12 Aligned_cols=196 Identities=13% Similarity=0.108 Sum_probs=123.5
Q ss_pred CceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCCc-hhHHHHHHHHHHHH
Q 004456 512 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND-RFVEQLVSSAEAAV 590 (752)
Q Consensus 512 ~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~-~~~~~~~~d~~~~~ 590 (752)
..|.||++||.+.. ...| ...+..| ..+|.|++ .+.+|+|.+.... .......+|+.+++
T Consensus 15 ~~~~iv~lhG~~~~-----------~~~~----~~~~~~l-~~~~~vi~---~D~~G~G~s~~~~~~~~~~~~~d~~~~l 75 (255)
T PRK10673 15 NNSPIVLVHGLFGS-----------LDNL----GVLARDL-VNDHDIIQ---VDMRNHGLSPRDPVMNYPAMAQDLLDTL 75 (255)
T ss_pred CCCCEEEECCCCCc-----------hhHH----HHHHHHH-hhCCeEEE---ECCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 36899999996321 0111 1234444 46799999 5566777664432 24556677777777
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCC-CCCCC-------------ccCcccc--ccch-
Q 004456 591 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY-NKTLT-------------PFGFQTE--FRTL- 653 (752)
Q Consensus 591 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~-~~~~~-------------~~~~~~~--~~~~- 653 (752)
+++ ..+++.|+||||||.+++.++.++|++++++|++++.. ..... ..+.... ....
T Consensus 76 ~~l------~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (255)
T PRK10673 76 DAL------QIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIM 149 (255)
T ss_pred HHc------CCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHH
Confidence 665 23579999999999999999999999999999875321 10000 0000000 0000
Q ss_pred ---------------------h--hhH---HHHHhcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCc
Q 004456 654 ---------------------W--EAT---NVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGAL 707 (752)
Q Consensus 654 ---------------------~--~~~---~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~ 707 (752)
| ... ..+........+..+++|+|+++|++|..++ ....+.+.+.+ ..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~--~~~~~~~~~~~----~~ 223 (255)
T PRK10673 150 RQHLNEEGVIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPHPALFIRGGNSPYVT--EAYRDDLLAQF----PQ 223 (255)
T ss_pred HHhcCCHHHHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCCCeEEEECCCCCCCC--HHHHHHHHHhC----CC
Confidence 0 000 0011111111244568999999999999987 66655554443 34
Q ss_pred EEEEEeCCCCccCCccccHHHHHHHHHHHHHH
Q 004456 708 SRLVLLPFEHHVYAARENVMHVIWETDRWLQK 739 (752)
Q Consensus 708 ~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 739 (752)
.++++++++||... .+.+..+.+.+.+||.+
T Consensus 224 ~~~~~~~~~gH~~~-~~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 224 ARAHVIAGAGHWVH-AEKPDAVLRAIRRYLND 254 (255)
T ss_pred cEEEEeCCCCCeee-ccCHHHHHHHHHHHHhc
Confidence 68899999999765 66688899999999975
No 80
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.59 E-value=1.2e-13 Score=139.87 Aligned_cols=196 Identities=15% Similarity=0.126 Sum_probs=126.2
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCCc--hhHHHHHHHHHHHH
Q 004456 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND--RFVEQLVSSAEAAV 590 (752)
Q Consensus 513 ~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~--~~~~~~~~d~~~~~ 590 (752)
.|.||++||.+... ..| ..+...| +.+|.|++ .+.+|+|.+..+. .......+|+.+.+
T Consensus 25 ~~plvllHG~~~~~-----------~~w----~~~~~~L-~~~~~vi~---~Dl~G~G~S~~~~~~~~~~~~~~~~~~~i 85 (276)
T TIGR02240 25 LTPLLIFNGIGANL-----------ELV----FPFIEAL-DPDLEVIA---FDVPGVGGSSTPRHPYRFPGLAKLAARML 85 (276)
T ss_pred CCcEEEEeCCCcch-----------HHH----HHHHHHh-ccCceEEE---ECCCCCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 36789999953110 111 1233343 45799999 6677888775432 23455566666666
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC-----------Cc-cCc--c---------
Q 004456 591 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL-----------TP-FGF--Q--------- 647 (752)
Q Consensus 591 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~-----------~~-~~~--~--------- 647 (752)
+.+ +.+++.|+||||||.+++.++.++|++++++|++++...... .. ..+ .
T Consensus 86 ~~l------~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (276)
T TIGR02240 86 DYL------DYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPKVLMMMASPRRYIQPSHGIHIAPD 159 (276)
T ss_pred HHh------CcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchhHHHHhcCchhhhccccccchhhh
Confidence 665 235799999999999999999999999999999987542100 00 000 0
Q ss_pred --ccc--c--chhhhHH----------HH------HhcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCC
Q 004456 648 --TEF--R--TLWEATN----------VY------IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHG 705 (752)
Q Consensus 648 --~~~--~--~~~~~~~----------~~------~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~ 705 (752)
... . ....... .+ ........+.++++|+|+++|++|..+| +.+++++.+.+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~v~--~~~~~~l~~~~~~-- 235 (276)
T TIGR02240 160 IYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHKIQQPTLVLAGDDDPIIP--LINMRLLAWRIPN-- 235 (276)
T ss_pred hccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhcCCCCEEEEEeCCCCcCC--HHHHHHHHHhCCC--
Confidence 000 0 0000000 00 0011123356789999999999999998 8888777766543
Q ss_pred CcEEEEEeCCCCccCCccccHHHHHHHHHHHHHHHh
Q 004456 706 ALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 741 (752)
Q Consensus 706 ~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 741 (752)
.+++++++ ||... .+.+..+.+.+.+|+++.-
T Consensus 236 --~~~~~i~~-gH~~~-~e~p~~~~~~i~~fl~~~~ 267 (276)
T TIGR02240 236 --AELHIIDD-GHLFL-ITRAEAVAPIIMKFLAEER 267 (276)
T ss_pred --CEEEEEcC-CCchh-hccHHHHHHHHHHHHHHhh
Confidence 47778875 99866 5678889999999998754
No 81
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.59 E-value=7.4e-14 Score=141.99 Aligned_cols=194 Identities=19% Similarity=0.156 Sum_probs=121.0
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCCc---hhHHHHHHHHHHH
Q 004456 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAA 589 (752)
Q Consensus 513 ~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~ 589 (752)
.|.||++||.+.. ...| ......| +++|.|++ .+.+|+|.+..+. .......+|+.++
T Consensus 28 ~~~vv~~hG~~~~-----------~~~~----~~~~~~l-~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~l~~~ 88 (278)
T TIGR03056 28 GPLLLLLHGTGAS-----------THSW----RDLMPPL-ARSFRVVA---PDLPGHGFTRAPFRFRFTLPSMAEDLSAL 88 (278)
T ss_pred CCeEEEEcCCCCC-----------HHHH----HHHHHHH-hhCcEEEe---ecCCCCCCCCCccccCCCHHHHHHHHHHH
Confidence 4889999995311 0111 1233344 45799999 5566777664332 2344555555555
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC------ccC--------cc--------
Q 004456 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT------PFG--------FQ-------- 647 (752)
Q Consensus 590 ~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~------~~~--------~~-------- 647 (752)
++.+ +.++++|+||||||.+++.++.+.|++++++|++++....... +.. ..
T Consensus 89 i~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (278)
T TIGR03056 89 CAAE------GLSPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYMARVLACNPFTPPMMSRGA 162 (278)
T ss_pred HHHc------CCCCceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccccchhhHhhhhcccchHHHHhhc
Confidence 4432 2357899999999999999999999989989888765321000 000 00
Q ss_pred -c-cc--------cchhh--hHHHHH-----------------hcC---hhhhcCCCCCCEEEEEeCCCCCCCCCHHHHH
Q 004456 648 -T-EF--------RTLWE--ATNVYI-----------------EMS---PITHANKIKKPILIIHGEVDDKVGLFPMQAE 695 (752)
Q Consensus 648 -~-~~--------~~~~~--~~~~~~-----------------~~~---~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~ 695 (752)
. .. ...+. ....+. .+. ....+.++++|+|+++|++|..+| ....+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~~vp--~~~~~ 240 (278)
T TIGR03056 163 ADQQRVERLIRDTGSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPRITIPLHLIAGEEDKAVP--PDESK 240 (278)
T ss_pred ccCcchhHHhhccccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhcccCCCCEEEEEeCCCcccC--HHHHH
Confidence 0 00 00000 000000 000 112355678999999999999998 77777
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHH
Q 004456 696 RFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 738 (752)
Q Consensus 696 ~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 738 (752)
.+.+.+. ..+++.++++||.+. .+.++.+.+.+.+||+
T Consensus 241 ~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 241 RAATRVP----TATLHVVPGGGHLVH-EEQADGVVGLILQAAE 278 (278)
T ss_pred HHHHhcc----CCeEEEECCCCCccc-ccCHHHHHHHHHHHhC
Confidence 6655543 357899999999876 5568889999999874
No 82
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.59 E-value=1.5e-13 Score=140.66 Aligned_cols=195 Identities=18% Similarity=0.185 Sum_probs=123.2
Q ss_pred eEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCCc---------hhHHHHHH
Q 004456 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---------RFVEQLVS 584 (752)
Q Consensus 514 P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~---------~~~~~~~~ 584 (752)
|.||++||.+... ..| ......|+.+ |.|++ .+.+|+|.+.... .......+
T Consensus 30 ~~vlllHG~~~~~-----------~~w----~~~~~~L~~~-~~vi~---~DlpG~G~S~~~~~~~~~~~~~~~~~~~a~ 90 (294)
T PLN02824 30 PALVLVHGFGGNA-----------DHW----RKNTPVLAKS-HRVYA---IDLLGYGYSDKPNPRSAPPNSFYTFETWGE 90 (294)
T ss_pred CeEEEECCCCCCh-----------hHH----HHHHHHHHhC-CeEEE---EcCCCCCCCCCCccccccccccCCHHHHHH
Confidence 7899999964211 111 2345566655 69999 6677888775432 22345555
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCC---CCc-cCcc------c---c--
Q 004456 585 SAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT---LTP-FGFQ------T---E-- 649 (752)
Q Consensus 585 d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~---~~~-~~~~------~---~-- 649 (752)
|+.+.++.+ . .+++.|+||||||++++.++.++|++++++|++++..... ... .... . .
T Consensus 91 ~l~~~l~~l---~---~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (294)
T PLN02824 91 QLNDFCSDV---V---GDPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRETA 164 (294)
T ss_pred HHHHHHHHh---c---CCCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhchh
Confidence 555555444 2 2689999999999999999999999999999998753110 000 0000 0 0
Q ss_pred ---------c-----cch----hh--------hHH-------------HHHh---cC----hhhhcCCCCCCEEEEEeCC
Q 004456 650 ---------F-----RTL----WE--------ATN-------------VYIE---MS----PITHANKIKKPILIIHGEV 683 (752)
Q Consensus 650 ---------~-----~~~----~~--------~~~-------------~~~~---~~----~~~~~~~~~~P~li~~G~~ 683 (752)
. ... +. ..+ .+.. .. ....++++++|+|+++|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~ 244 (294)
T PLN02824 165 VGKAFFKSVATPETVKNILCQCYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCPVLIAWGEK 244 (294)
T ss_pred HHHHHHHhhcCHHHHHHHHHHhccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHhhcCCCeEEEEecC
Confidence 0 000 00 000 0000 00 1123566789999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHHHH
Q 004456 684 DDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 740 (752)
Q Consensus 684 D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 740 (752)
|..+| ...++.+.+ .....++++++++||... .+.++.+.+.+.+||+++
T Consensus 245 D~~~~--~~~~~~~~~----~~~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 245 DPWEP--VELGRAYAN----FDAVEDFIVLPGVGHCPQ-DEAPELVNPLIESFVARH 294 (294)
T ss_pred CCCCC--hHHHHHHHh----cCCccceEEeCCCCCChh-hhCHHHHHHHHHHHHhcC
Confidence 99998 766655433 223358999999999766 677889999999999764
No 83
>PRK10985 putative hydrolase; Provisional
Probab=99.58 E-value=1.3e-13 Score=142.24 Aligned_cols=232 Identities=17% Similarity=0.072 Sum_probs=137.9
Q ss_pred EEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecC
Q 004456 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 562 (752)
Q Consensus 483 ~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~ 562 (752)
+...+...||..+.... .+... ...+.|+||++||.+.. ....+...++..|+++||.|++.
T Consensus 32 ~~~~~~~~dg~~~~l~w-~~~~~---~~~~~p~vll~HG~~g~-------------~~~~~~~~~~~~l~~~G~~v~~~- 93 (324)
T PRK10985 32 YWQRLELPDGDFVDLAW-SEDPA---QARHKPRLVLFHGLEGS-------------FNSPYAHGLLEAAQKRGWLGVVM- 93 (324)
T ss_pred ceeEEECCCCCEEEEec-CCCCc---cCCCCCEEEEeCCCCCC-------------CcCHHHHHHHHHHHHCCCEEEEE-
Confidence 33334556776655432 22111 12246999999995311 01111123566888999999994
Q ss_pred CCCCCCCCCCCC--CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc--eeEEEEccCCCC
Q 004456 563 SIPIIGEGDKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL--FCCGIARSGSYN 638 (752)
Q Consensus 563 ~~~~~g~g~~~~--~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~--~~~~v~~~~~~~ 638 (752)
+.+|+|.+.. ...+.....+|+.+++++++++.. ..+++++||||||.+++.+++++++. ++++|++++..+
T Consensus 94 --d~rG~g~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~--~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~ 169 (324)
T PRK10985 94 --HFRGCSGEPNRLHRIYHSGETEDARFFLRWLQREFG--HVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLM 169 (324)
T ss_pred --eCCCCCCCccCCcceECCCchHHHHHHHHHHHHhCC--CCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCC
Confidence 4456654321 111222346889999999988632 36799999999999888888776543 788888887654
Q ss_pred CCCCc----------cC-----------------ccc----cc------cch-------------h-hhHHHHHhcChhh
Q 004456 639 KTLTP----------FG-----------------FQT----EF------RTL-------------W-EATNVYIEMSPIT 667 (752)
Q Consensus 639 ~~~~~----------~~-----------------~~~----~~------~~~-------------~-~~~~~~~~~~~~~ 667 (752)
..... +. +.. .. ... + ...+.|...+...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~g~~~~~~~y~~~~~~~ 249 (324)
T PRK10985 170 LEACSYRMEQGFSRVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRLREFDDLITARIHGFADAIDYYRQCSALP 249 (324)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHhcCCcHHHHhhhheeccCCCCCHHHHHHHCChHH
Confidence 21000 00 000 00 000 0 0112233344455
Q ss_pred hcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccc---cHHHHHH-HHHHHHHHHhc
Q 004456 668 HANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARE---NVMHVIW-ETDRWLQKYCL 742 (752)
Q Consensus 668 ~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~---~~~~~~~-~~~~fl~~~l~ 742 (752)
.++++++|+|+++|++|++++ ......+. +....+++++++++||...... ....+.+ .+.+||+..++
T Consensus 250 ~l~~i~~P~lii~g~~D~~~~--~~~~~~~~----~~~~~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~~~ 322 (324)
T PRK10985 250 LLNQIRKPTLIIHAKDDPFMT--HEVIPKPE----SLPPNVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTYLE 322 (324)
T ss_pred HHhCCCCCEEEEecCCCCCCC--hhhChHHH----HhCCCeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHhhc
Confidence 678889999999999999987 65544432 2234578899999999754322 1223443 48899987764
No 84
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.58 E-value=2.2e-12 Score=132.65 Aligned_cols=265 Identities=13% Similarity=0.028 Sum_probs=158.7
Q ss_pred cceeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCc
Q 004456 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (752)
Q Consensus 4 ~~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~ 83 (752)
...|.++++.. ++..+.. ..........|+|||+.++.+. .....|+++++++++..+......
T Consensus 10 d~~v~~~d~~t----~~~~~~~--~~~~~~~~l~~~~dg~~l~~~~---------~~~~~v~~~d~~~~~~~~~~~~~~- 73 (300)
T TIGR03866 10 DNTISVIDTAT----LEVTRTF--PVGQRPRGITLSKDGKLLYVCA---------SDSDTIQVIDLATGEVIGTLPSGP- 73 (300)
T ss_pred CCEEEEEECCC----CceEEEE--ECCCCCCceEECCCCCEEEEEE---------CCCCeEEEEECCCCcEEEeccCCC-
Confidence 35678888766 5543332 2223467799999999876543 234679999998887654322221
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEc
Q 004456 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (752)
Q Consensus 84 ~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~ 163 (752)
....+.|+|||+.|+++.. ....|+++|
T Consensus 74 ----~~~~~~~~~~g~~l~~~~~------------------------------------------------~~~~l~~~d 101 (300)
T TIGR03866 74 ----DPELFALHPNGKILYIANE------------------------------------------------DDNLVTVID 101 (300)
T ss_pred ----CccEEEECCCCCEEEEEcC------------------------------------------------CCCeEEEEE
Confidence 2356789999998876521 114688888
Q ss_pred c-CCC-ccccCCccceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCcc
Q 004456 164 L-DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (752)
Q Consensus 164 ~-~G~-~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (752)
+ +++ ...+........+.|+|||+.|++..... ..+..++..+.+........
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~------------~~~~~~d~~~~~~~~~~~~~------------- 156 (300)
T TIGR03866 102 IETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETT------------NMAHFIDTKTYEIVDNVLVD------------- 156 (300)
T ss_pred CCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCC------------CeEEEEeCCCCeEEEEEEcC-------------
Confidence 8 443 22332223456789999999999876542 24556787765443221111
Q ss_pred ccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCC-CeEEeec-------ccceeeeeeecCCceE
Q 004456 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILHKL-------DLRFRSVSWCDDSLAL 313 (752)
Q Consensus 242 ~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~l~~~-------~~~~~~~~~spDg~~l 313 (752)
..+..++|+|||+. |++... ..+.++++|+ ++++ ...+... ......++|+|||+.+
T Consensus 157 ~~~~~~~~s~dg~~-l~~~~~-----------~~~~v~i~d~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~ 221 (300)
T TIGR03866 157 QRPRFAEFTADGKE-LWVSSE-----------IGGTVSVIDV---ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTA 221 (300)
T ss_pred CCccEEEECCCCCE-EEEEcC-----------CCCEEEEEEc---CcceeeeeeeecccccccccCCccceEECCCCCEE
Confidence 11446899999997 555431 2346888888 3332 2333211 1112357799999986
Q ss_pred EEeeecccCceeEEEEcCCCCCcccee-ccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCC
Q 004456 314 VNETWYKTSQTRTWLVCPGSKDVAPRV-LFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEG 392 (752)
Q Consensus 314 ~~~~~~~~~~~~l~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~ 392 (752)
+..... ...|.++|+.+. +... +.... ..-.++|+|||++|+....
T Consensus 222 ~~~~~~---~~~i~v~d~~~~--~~~~~~~~~~--------~~~~~~~~~~g~~l~~~~~-------------------- 268 (300)
T TIGR03866 222 FVALGP---ANRVAVVDAKTY--EVLDYLLVGQ--------RVWQLAFTPDEKYLLTTNG-------------------- 268 (300)
T ss_pred EEEcCC---CCeEEEEECCCC--cEEEEEEeCC--------CcceEEECCCCCEEEEEcC--------------------
Confidence 654311 235888888764 2221 11111 1112679999999877641
Q ss_pred CCCeeEEEecCCCceeE
Q 004456 393 NIPFLDLFDINTGSKER 409 (752)
Q Consensus 393 ~~~~l~~~d~~~g~~~~ 409 (752)
....|.+||+.+++...
T Consensus 269 ~~~~i~v~d~~~~~~~~ 285 (300)
T TIGR03866 269 VSNDVSVIDVAALKVIK 285 (300)
T ss_pred CCCeEEEEECCCCcEEE
Confidence 12259999999988643
No 85
>PLN02965 Probable pheophorbidase
Probab=99.57 E-value=1.5e-13 Score=137.19 Aligned_cols=196 Identities=12% Similarity=0.108 Sum_probs=125.1
Q ss_pred eEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCCc---hhHHHHHHHHHHHH
Q 004456 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAAV 590 (752)
Q Consensus 514 P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~~ 590 (752)
-+||++||.+.. ...| ......|.+.||.|++ .+.+|+|.+.... .......+|+.+.+
T Consensus 4 ~~vvllHG~~~~-----------~~~w----~~~~~~L~~~~~~via---~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l 65 (255)
T PLN02965 4 IHFVFVHGASHG-----------AWCW----YKLATLLDAAGFKSTC---VDLTGAGISLTDSNTVSSSDQYNRPLFALL 65 (255)
T ss_pred eEEEEECCCCCC-----------cCcH----HHHHHHHhhCCceEEE---ecCCcCCCCCCCccccCCHHHHHHHHHHHH
Confidence 359999996421 1111 2345567789999999 6667887774321 23456666666666
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCC---CCC----C------Cc--cCc--ccc---c
Q 004456 591 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY---NKT----L------TP--FGF--QTE---F 650 (752)
Q Consensus 591 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~---~~~----~------~~--~~~--~~~---~ 650 (752)
+.+. + ..++.++||||||.+++.++.++|++++++|++++.. ... . .. +.. ... .
T Consensus 66 ~~l~----~-~~~~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (255)
T PLN02965 66 SDLP----P-DHKVILVGHSIGGGSVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKP 140 (255)
T ss_pred HhcC----C-CCCEEEEecCcchHHHHHHHHhCchheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCC
Confidence 5541 1 1489999999999999999999999999999887641 100 0 00 000 000 0
Q ss_pred c-----c--hh----------hhHHHH-Hh--cChh----------hhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHH
Q 004456 651 R-----T--LW----------EATNVY-IE--MSPI----------THANKIKKPILIIHGEVDDKVGLFPMQAERFFDA 700 (752)
Q Consensus 651 ~-----~--~~----------~~~~~~-~~--~~~~----------~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~ 700 (752)
. . .. ...... .. ..+. ..+.++++|+|+++|++|..+| +..++.+.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vP~lvi~g~~D~~~~--~~~~~~~~~~ 218 (255)
T PLN02965 141 PTGIMMKPEFVRHYYYNQSPLEDYTLSSKLLRPAPVRAFQDLDKLPPNPEAEKVPRVYIKTAKDNLFD--PVRQDVMVEN 218 (255)
T ss_pred cchhhcCHHHHHHHHhcCCCHHHHHHHHHhcCCCCCcchhhhhhccchhhcCCCCEEEEEcCCCCCCC--HHHHHHHHHh
Confidence 0 0 00 000000 00 0000 0123578999999999999998 8777776655
Q ss_pred HHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHHH
Q 004456 701 LKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 739 (752)
Q Consensus 701 l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 739 (752)
+. ..++++++++||+.. .+.++.+.+.+.+|+++
T Consensus 219 ~~----~a~~~~i~~~GH~~~-~e~p~~v~~~l~~~~~~ 252 (255)
T PLN02965 219 WP----PAQTYVLEDSDHSAF-FSVPTTLFQYLLQAVSS 252 (255)
T ss_pred CC----cceEEEecCCCCchh-hcCHHHHHHHHHHHHHH
Confidence 54 347899999999877 67788899999999765
No 86
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.57 E-value=3.7e-14 Score=141.55 Aligned_cols=193 Identities=18% Similarity=0.171 Sum_probs=120.3
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCCc--hhHHHHHHHHHHHH
Q 004456 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND--RFVEQLVSSAEAAV 590 (752)
Q Consensus 513 ~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~--~~~~~~~~d~~~~~ 590 (752)
.|+||++||.+.. ...+...+.. +..||.|++ .+.+|+|.+.... .......+|+.+.+
T Consensus 13 ~~~li~~hg~~~~---------------~~~~~~~~~~-l~~~~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~i 73 (251)
T TIGR02427 13 APVLVFINSLGTD---------------LRMWDPVLPA-LTPDFRVLR---YDKRGHGLSDAPEGPYSIEDLADDVLALL 73 (251)
T ss_pred CCeEEEEcCcccc---------------hhhHHHHHHH-hhcccEEEE---ecCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 5899999995311 0111123333 457999999 5566777653332 23445555555555
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc-c----------Ccc-----------c
Q 004456 591 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP-F----------GFQ-----------T 648 (752)
Q Consensus 591 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~-~----------~~~-----------~ 648 (752)
+.+ +.+++.++|||+||++++.++.+.|++++++|++++........ + ... .
T Consensus 74 ~~~------~~~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (251)
T TIGR02427 74 DHL------GIERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFT 147 (251)
T ss_pred HHh------CCCceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcc
Confidence 543 23689999999999999999999999999988887543211000 0 000 0
Q ss_pred -c----ccc---hhh------hH-------HHHHhcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCc
Q 004456 649 -E----FRT---LWE------AT-------NVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGAL 707 (752)
Q Consensus 649 -~----~~~---~~~------~~-------~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~ 707 (752)
. ... .+. .. ..+...+....+.++++|+|+++|++|..+| .+..+.+.+.+. .
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~g~~D~~~~--~~~~~~~~~~~~----~ 221 (251)
T TIGR02427 148 PGFREAHPARLDLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAIAVPTLCIAGDQDGSTP--PELVREIADLVP----G 221 (251)
T ss_pred cccccCChHHHHHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhcCCCeEEEEeccCCcCC--hHHHHHHHHhCC----C
Confidence 0 000 000 00 0011112223456678999999999999998 777766665543 3
Q ss_pred EEEEEeCCCCccCCccccHHHHHHHHHHHH
Q 004456 708 SRLVLLPFEHHVYAARENVMHVIWETDRWL 737 (752)
Q Consensus 708 ~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 737 (752)
.+++++++++|... .+.++.+.+.+.+||
T Consensus 222 ~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl 250 (251)
T TIGR02427 222 ARFAEIRGAGHIPC-VEQPEAFNAALRDFL 250 (251)
T ss_pred ceEEEECCCCCccc-ccChHHHHHHHHHHh
Confidence 57899999999876 456778888888886
No 87
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.57 E-value=2.4e-13 Score=143.88 Aligned_cols=222 Identities=14% Similarity=0.137 Sum_probs=134.9
Q ss_pred EEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHH---hCCcEEEec
Q 004456 485 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL---ARRFAVLAG 561 (752)
Q Consensus 485 ~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~G~~v~~~ 561 (752)
..+....+..+++....|++. ...|.||++||.+... ..|.. .....|+ +.+|.|++
T Consensus 178 ~~~~~~~~~~l~~~~~gp~~~-----~~k~~VVLlHG~~~s~-----------~~W~~---~~~~~L~~~~~~~yrVia- 237 (481)
T PLN03087 178 TSWLSSSNESLFVHVQQPKDN-----KAKEDVLFIHGFISSS-----------AFWTE---TLFPNFSDAAKSTYRLFA- 237 (481)
T ss_pred eeeEeeCCeEEEEEEecCCCC-----CCCCeEEEECCCCccH-----------HHHHH---HHHHHHHHHhhCCCEEEE-
Confidence 345555667888888888751 1257899999964211 11110 1112333 47999999
Q ss_pred CCCCCCCCCCCCCCch---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCC
Q 004456 562 PSIPIIGEGDKLPNDR---FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (752)
Q Consensus 562 ~~~~~~g~g~~~~~~~---~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~ 638 (752)
.+.+|+|.+..+.. ......+++. ..+.+.. ..+++.++||||||++++.++.++|++++++|++++...
T Consensus 238 --~Dl~G~G~S~~p~~~~ytl~~~a~~l~---~~ll~~l--g~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~ 310 (481)
T PLN03087 238 --VDLLGFGRSPKPADSLYTLREHLEMIE---RSVLERY--KVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPYY 310 (481)
T ss_pred --ECCCCCCCCcCCCCCcCCHHHHHHHHH---HHHHHHc--CCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCcc
Confidence 56667877644321 2233333332 1232322 246899999999999999999999999999999986432
Q ss_pred CCCCc-------------cC-ccc-----------c---c---------cchhhhH----------HHHH----hc--Ch
Q 004456 639 KTLTP-------------FG-FQT-----------E---F---------RTLWEAT----------NVYI----EM--SP 665 (752)
Q Consensus 639 ~~~~~-------------~~-~~~-----------~---~---------~~~~~~~----------~~~~----~~--~~ 665 (752)
..... .. +.. + . ...|+.. ..+. .. .+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 390 (481)
T PLN03087 311 PVPKGVQATQYVMRKVAPRRVWPPIAFGASVACWYEHISRTICLVICKNHRLWEFLTRLLTRNRMRTFLIEGFFCHTHNA 390 (481)
T ss_pred ccccchhHHHHHHHHhcccccCCccccchhHHHHHHHHHhhhhcccccchHHHHHHHHHhhhhhhhHHHHHHHHhccchh
Confidence 10000 00 000 0 0 0001100 0000 00 00
Q ss_pred -------------------h-hhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCcccc
Q 004456 666 -------------------I-THANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAREN 725 (752)
Q Consensus 666 -------------------~-~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~ 725 (752)
+ ...+++++|+|+++|++|..+| +..++.+.+.+. ..++++++++||.....+.
T Consensus 391 ~~~~l~~~i~~~~~~l~~~l~~l~~~I~vPtLII~Ge~D~ivP--~~~~~~la~~iP----~a~l~vI~~aGH~~~v~e~ 464 (481)
T PLN03087 391 AWHTLHNIICGSGSKLDGYLDHVRDQLKCDVAIFHGGDDELIP--VECSYAVKAKVP----RARVKVIDDKDHITIVVGR 464 (481)
T ss_pred hHHHHHHHHhchhhhhhhHHHHHHHhCCCCEEEEEECCCCCCC--HHHHHHHHHhCC----CCEEEEeCCCCCcchhhcC
Confidence 0 0112578999999999999999 888877766653 3589999999998664566
Q ss_pred HHHHHHHHHHHHHH
Q 004456 726 VMHVIWETDRWLQK 739 (752)
Q Consensus 726 ~~~~~~~~~~fl~~ 739 (752)
+..+.+.+.+|...
T Consensus 465 p~~fa~~L~~F~~~ 478 (481)
T PLN03087 465 QKEFARELEEIWRR 478 (481)
T ss_pred HHHHHHHHHHHhhc
Confidence 78888888888754
No 88
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=99.56 E-value=8.8e-14 Score=121.93 Aligned_cols=202 Identities=17% Similarity=0.219 Sum_probs=137.4
Q ss_pred eEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEec
Q 004456 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (752)
Q Consensus 482 ~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~ 561 (752)
...+.++..-| .+.+..-.++ ....|+.|.+|..|...+ ++.+......+..|.++||+++.
T Consensus 4 ~~~v~i~Gp~G-~le~~~~~~~------~~~~~iAli~HPHPl~gG----------tm~nkvv~~la~~l~~~G~atlR- 65 (210)
T COG2945 4 MPTVIINGPAG-RLEGRYEPAK------TPAAPIALICHPHPLFGG----------TMNNKVVQTLARALVKRGFATLR- 65 (210)
T ss_pred CCcEEecCCcc-cceeccCCCC------CCCCceEEecCCCccccC----------ccCCHHHHHHHHHHHhCCceEEe-
Confidence 44566665554 4555544333 123799999999764322 23333344567788899999999
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC
Q 004456 562 PSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL 641 (752)
Q Consensus 562 ~~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~ 641 (752)
++++|-|++...-..+-.+.+|..++++|+++++. +..-..+.|+|+|+++++.++.+.|+. ...++..|..+.
T Consensus 66 --fNfRgVG~S~G~fD~GiGE~~Da~aaldW~~~~hp-~s~~~~l~GfSFGa~Ia~~la~r~~e~-~~~is~~p~~~~-- 139 (210)
T COG2945 66 --FNFRGVGRSQGEFDNGIGELEDAAAALDWLQARHP-DSASCWLAGFSFGAYIAMQLAMRRPEI-LVFISILPPINA-- 139 (210)
T ss_pred --ecccccccccCcccCCcchHHHHHHHHHHHHhhCC-CchhhhhcccchHHHHHHHHHHhcccc-cceeeccCCCCc--
Confidence 55566666655555566778999999999999864 222358899999999999999998764 555555554331
Q ss_pred CccCccccccchhhhHHHHHhcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 004456 642 TPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYA 721 (752)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 721 (752)
+. ...+.-...|.++++|+.|.+++ .....++++- .+.+.+.+++++|.|.
T Consensus 140 --~d--------------------fs~l~P~P~~~lvi~g~~Ddvv~--l~~~l~~~~~-----~~~~~i~i~~a~HFF~ 190 (210)
T COG2945 140 --YD--------------------FSFLAPCPSPGLVIQGDADDVVD--LVAVLKWQES-----IKITVITIPGADHFFH 190 (210)
T ss_pred --hh--------------------hhhccCCCCCceeEecChhhhhc--HHHHHHhhcC-----CCCceEEecCCCceec
Confidence 00 01122235899999999999988 6665544432 5568899999999875
Q ss_pred ccccHHHHHHHHHHHHH
Q 004456 722 ARENVMHVIWETDRWLQ 738 (752)
Q Consensus 722 ~~~~~~~~~~~~~~fl~ 738 (752)
+ ......+.+.+|+.
T Consensus 191 g--Kl~~l~~~i~~~l~ 205 (210)
T COG2945 191 G--KLIELRDTIADFLE 205 (210)
T ss_pred c--cHHHHHHHHHHHhh
Confidence 3 34566777888884
No 89
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.56 E-value=5.7e-14 Score=131.84 Aligned_cols=344 Identities=17% Similarity=0.188 Sum_probs=196.3
Q ss_pred eeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCCCCC
Q 004456 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (752)
Q Consensus 35 ~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~ 114 (752)
...|||+|++||..++ -.|.|.|..+=+..+|...-. -+..+.|+.|+.+|+....
T Consensus 13 ~c~fSp~g~yiAs~~~-----------yrlviRd~~tlq~~qlf~cld-----ki~yieW~ads~~ilC~~y-------- 68 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSR-----------YRLVIRDSETLQLHQLFLCLD-----KIVYIEWKADSCHILCVAY-------- 68 (447)
T ss_pred ceeECCCCCeeeeeee-----------eEEEEeccchhhHHHHHHHHH-----Hhhheeeeccceeeeeeee--------
Confidence 4689999999999753 488899988888777754322 3567899999999998743
Q ss_pred CccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCC-C-ccccCCc-cceeccccCCCCceEEE
Q 004456 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-T-AKDFGTP-AVYTAVEPSPDQKYVLI 191 (752)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G-~-~~~l~~~-~~~~~~~~SpDGk~l~~ 191 (752)
+...|.++++.. + ...+.++ .+.+...|||||++|+.
T Consensus 69 ----------------------------------------k~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~ 108 (447)
T KOG4497|consen 69 ----------------------------------------KDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILL 108 (447)
T ss_pred ----------------------------------------ccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEee
Confidence 225788888844 3 3455555 88999999999999998
Q ss_pred EecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccc
Q 004456 192 TSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVE 271 (752)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~ 271 (752)
++. |..+|.+|.+.++....+...... ...++|.|||+. .+..+..
T Consensus 109 tse------------F~lriTVWSL~t~~~~~~~~pK~~-------------~kg~~f~~dg~f-~ai~sRr-------- 154 (447)
T KOG4497|consen 109 TSE------------FDLRITVWSLNTQKGYLLPHPKTN-------------VKGYAFHPDGQF-CAILSRR-------- 154 (447)
T ss_pred eec------------ceeEEEEEEeccceeEEecccccC-------------ceeEEECCCCce-eeeeecc--------
Confidence 753 335889999998887777665543 567899999997 5555421
Q ss_pred cCccceEEeccCCCCCCCC----CeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccc
Q 004456 272 VSPRDIIYTQPAEPAEGEK----PEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE 347 (752)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~----~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 347 (752)
+-.-.+.+ ..-. .+.......+...+.|||||.+|+.- +.--+..+|.+.-..|
T Consensus 155 ----DCkdyv~i---~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVw--d~~Leykv~aYe~~lG------------- 212 (447)
T KOG4497|consen 155 ----DCKDYVQI---SSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVW--DNVLEYKVYAYERGLG------------- 212 (447)
T ss_pred ----cHHHHHHH---HhhHHHHHHHhcCCCcccccCceECCCCcEEEEe--cchhhheeeeeeeccc-------------
Confidence 11001111 0000 00011112234567899999999884 3334456666654332
Q ss_pred cccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCC--------Cce-eE---------
Q 004456 348 NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINT--------GSK-ER--------- 409 (752)
Q Consensus 348 ~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~--------g~~-~~--------- 409 (752)
.....|||-++.|++.+.+ +.+.+.+.=-+.+-+...++..+.-.+ -+. +.
T Consensus 213 -------~k~v~wsP~~qflavGsyD----~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p 281 (447)
T KOG4497|consen 213 -------LKFVEWSPCNQFLAVGSYD----QMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTP 281 (447)
T ss_pred -------eeEEEeccccceEEeeccc----hhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCC
Confidence 1114477777777776643 222222211111111111111111100 000 00
Q ss_pred ------Eeeccchhhhhc---eee------------eecCCcceecccCCCEEEEEEecCCCCcEEEEEECCCCCeeEee
Q 004456 410 ------IWESNREKYFET---AVA------------LVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQIT 468 (752)
Q Consensus 410 ------l~~~~~~~~~~~---~~~------------~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~~g~~~~lt 468 (752)
.+...+. .+|. ... -.-+.+.++||+|+.+++- .+.+.|..+|++|+...+...+.
T Consensus 282 ~~~~a~~~~~se~-~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aT--rnd~~PnalW~Wdlq~l~l~avL 358 (447)
T KOG4497|consen 282 TDLEAHIWEESET-IYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAAT--RNDKYPNALWLWDLQNLKLHAVL 358 (447)
T ss_pred CccccCccccchh-hhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEee--ecCCCCceEEEEechhhhhhhhh
Confidence 0000000 0000 000 0123445789999876643 35667889999999887765544
Q ss_pred cCCCCC--CCcCCCceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCc
Q 004456 469 NFPHPY--PTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYK 525 (752)
Q Consensus 469 ~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~ 525 (752)
-+..+. .+.+...++-+... + ..+.++|.|.+ |.+|...+-||+
T Consensus 359 iQk~piraf~WdP~~prL~vct--g--~srLY~W~psg---------~~~V~vP~~GF~ 404 (447)
T KOG4497|consen 359 IQKHPIRAFEWDPGRPRLVVCT--G--KSRLYFWAPSG---------PRVVGVPKKGFN 404 (447)
T ss_pred hhccceeEEEeCCCCceEEEEc--C--CceEEEEcCCC---------ceEEecCCCCce
Confidence 444442 22333344444443 2 35577777764 677777775443
No 90
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.55 E-value=3.7e-13 Score=140.93 Aligned_cols=199 Identities=17% Similarity=0.148 Sum_probs=121.9
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCCc---hhHHHHHHHHHHH
Q 004456 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAA 589 (752)
Q Consensus 513 ~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~ 589 (752)
.|.||++||.+.. ...| ..+...| ..+|.|++ .+.+|+|.+..+. .......+++.+.
T Consensus 88 gp~lvllHG~~~~-----------~~~w----~~~~~~L-~~~~~via---~Dl~G~G~S~~~~~~~~~~~~~a~~l~~~ 148 (360)
T PLN02679 88 GPPVLLVHGFGAS-----------IPHW----RRNIGVL-AKNYTVYA---IDLLGFGASDKPPGFSYTMETWAELILDF 148 (360)
T ss_pred CCeEEEECCCCCC-----------HHHH----HHHHHHH-hcCCEEEE---ECCCCCCCCCCCCCccccHHHHHHHHHHH
Confidence 4789999996421 0111 1233344 45899999 5667888775432 1234445555555
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH-hCCCceeEEEEccCCCCCCCC----ccCc----------------cc
Q 004456 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA-HAPHLFCCGIARSGSYNKTLT----PFGF----------------QT 648 (752)
Q Consensus 590 ~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~-~~p~~~~~~v~~~~~~~~~~~----~~~~----------------~~ 648 (752)
++.+ ..+++.|+||||||.+++.+++ ++|++++++|++++....... .+.. ..
T Consensus 149 l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (360)
T PLN02679 149 LEEV------VQKPTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRG 222 (360)
T ss_pred HHHh------cCCCeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHHHHHHHhhchh
Confidence 4433 2368999999999999998887 468999999998864311000 0000 00
Q ss_pred ------c----ccch---------------hhh-------------HHHHHh-------cChhhhcCCCCCCEEEEEeCC
Q 004456 649 ------E----FRTL---------------WEA-------------TNVYIE-------MSPITHANKIKKPILIIHGEV 683 (752)
Q Consensus 649 ------~----~~~~---------------~~~-------------~~~~~~-------~~~~~~~~~~~~P~li~~G~~ 683 (752)
. .... ... ...+.. .+....+.++++|+|+++|++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLii~G~~ 302 (360)
T PLN02679 223 IASALFNRVKQRDNLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRISLPILVLWGDQ 302 (360)
T ss_pred hHHHHHHHhcCHHHHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcCCCEEEEEeCC
Confidence 0 0000 000 000000 011223567889999999999
Q ss_pred CCCCCCCHHHH-HHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHHH
Q 004456 684 DDKVGLFPMQA-ERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 739 (752)
Q Consensus 684 D~~v~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 739 (752)
|..+| +... .+.++.+.+.-.+.++++++++||... .+.++++.+.+.+||.+
T Consensus 303 D~~~p--~~~~~~~~~~~l~~~ip~~~l~~i~~aGH~~~-~E~Pe~~~~~I~~FL~~ 356 (360)
T PLN02679 303 DPFTP--LDGPVGKYFSSLPSQLPNVTLYVLEGVGHCPH-DDRPDLVHEKLLPWLAQ 356 (360)
T ss_pred CCCcC--chhhHHHHHHhhhccCCceEEEEcCCCCCCcc-ccCHHHHHHHHHHHHHh
Confidence 99988 6532 233444544435679999999999865 67789999999999975
No 91
>PLN00021 chlorophyllase
Probab=99.53 E-value=6.8e-13 Score=133.89 Aligned_cols=208 Identities=16% Similarity=0.112 Sum_probs=131.2
Q ss_pred cEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCC
Q 004456 493 VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDK 572 (752)
Q Consensus 493 ~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~ 572 (752)
..+++.+++|.. .+++|+||++||.+.. ...+...+..|+++||.|++++.++. +..
T Consensus 37 ~~~p~~v~~P~~-----~g~~PvVv~lHG~~~~---------------~~~y~~l~~~Las~G~~VvapD~~g~---~~~ 93 (313)
T PLN00021 37 PPKPLLVATPSE-----AGTYPVLLFLHGYLLY---------------NSFYSQLLQHIASHGFIVVAPQLYTL---AGP 93 (313)
T ss_pred CCceEEEEeCCC-----CCCCCEEEEECCCCCC---------------cccHHHHHHHHHhCCCEEEEecCCCc---CCC
Confidence 468899999975 3458999999996421 11223567788999999999665432 211
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHc--------CCCCCCcEEEEEeChHHHHHHHHHHhCCC-----ceeEEEEccCCCCC
Q 004456 573 LPNDRFVEQLVSSAEAAVEEVVRR--------GVADPSRIAVGGHSYGAFMTAHLLAHAPH-----LFCCGIARSGSYNK 639 (752)
Q Consensus 573 ~~~~~~~~~~~~d~~~~~~~l~~~--------~~~d~~~i~l~G~S~GG~~a~~~~~~~p~-----~~~~~v~~~~~~~~ 639 (752)
. ....+++..++++|+.+. ..+|.++++++||||||++++.++...++ +|+++|.+.|+...
T Consensus 94 ~-----~~~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~ 168 (313)
T PLN00021 94 D-----GTDEIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGT 168 (313)
T ss_pred C-----chhhHHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecccccc
Confidence 0 122345566777777652 23567899999999999999999998764 57888988886432
Q ss_pred CCCccCccccccchhhhHHHHHhcChhhhcCCCCCCEEEEEeCCCC-----C----CCCCHHHHHHHHHHHHhCCCcEEE
Q 004456 640 TLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDD-----K----VGLFPMQAERFFDALKGHGALSRL 710 (752)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~-----~----v~~~~~~~~~~~~~l~~~~~~~~~ 710 (752)
..... .. ++. + ...+ ..-++..|+|++++..|. . .| +..+-.++++++ +.+..+
T Consensus 169 ~~~~~---~~---p~i----l-~~~~--~s~~~~~P~liig~g~~~~~~~~~~p~~ap-~~~~~~~f~~~~---~~~~~~ 231 (313)
T PLN00021 169 SKGKQ---TP---PPV----L-TYAP--HSFNLDIPVLVIGTGLGGEPRNPLFPPCAP-DGVNHAEFFNEC---KAPAVH 231 (313)
T ss_pred ccccC---CC---Ccc----c-ccCc--ccccCCCCeEEEecCCCcccccccccccCC-CCCCHHHHHHhc---CCCeee
Confidence 11100 00 000 0 0000 112367999999999763 1 22 122335666655 345688
Q ss_pred EEeCCCCccCCccc----------------------cHHHHHHHHHHHHHHHhcCCC
Q 004456 711 VLLPFEHHVYAARE----------------------NVMHVIWETDRWLQKYCLSNT 745 (752)
Q Consensus 711 ~~~~~~~H~~~~~~----------------------~~~~~~~~~~~fl~~~l~~~~ 745 (752)
.+.++++|.-...+ .++.....+++||..+|.+..
T Consensus 232 ~~~~~~gH~~~~~~~~~~~~~~~~~~~c~~g~~~~~~r~~~~g~~~aFl~~~l~~~~ 288 (313)
T PLN00021 232 FVAKDYGHMDMLDDDTSGIRGKITGCMCKNGKPRKPMRRFVGGAVVAFLKAYLEGDT 288 (313)
T ss_pred eeecCCCcceeecCCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhcCch
Confidence 88999999633111 123445578999999997653
No 92
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.53 E-value=3.3e-12 Score=115.68 Aligned_cols=276 Identities=13% Similarity=0.120 Sum_probs=184.0
Q ss_pred CCcceeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCC
Q 004456 2 PFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (752)
Q Consensus 2 ~~~~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~ 81 (752)
+|..+|.++.+.. |.=.+-...+++ .++...++||++.||-. +..+|.++|+.++.+.++..-+
T Consensus 17 ~YDhTIRfWqa~t----G~C~rTiqh~ds-qVNrLeiTpdk~~LAaa-----------~~qhvRlyD~~S~np~Pv~t~e 80 (311)
T KOG0315|consen 17 GYDHTIRFWQALT----GICSRTIQHPDS-QVNRLEITPDKKDLAAA-----------GNQHVRLYDLNSNNPNPVATFE 80 (311)
T ss_pred cCcceeeeeehhc----CeEEEEEecCcc-ceeeEEEcCCcchhhhc-----------cCCeeEEEEccCCCCCceeEEe
Confidence 5888999998877 755444435655 58999999999999994 4589999999998886664333
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEE
Q 004456 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (752)
Q Consensus 82 ~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~ 161 (752)
.. +..+....|.-||++++-.+.+ +.+.+
T Consensus 81 ~h--~kNVtaVgF~~dgrWMyTgseD-------------------------------------------------gt~kI 109 (311)
T KOG0315|consen 81 GH--TKNVTAVGFQCDGRWMYTGSED-------------------------------------------------GTVKI 109 (311)
T ss_pred cc--CCceEEEEEeecCeEEEecCCC-------------------------------------------------ceEEE
Confidence 22 1146788999999999865321 56777
Q ss_pred Ecc-CCCccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCC
Q 004456 162 GSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (752)
Q Consensus 162 ~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (752)
||+ .-...++... ..+..+...|....|+..-.. +.|++||+..........++..
T Consensus 110 WdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqs-------------g~irvWDl~~~~c~~~liPe~~--------- 167 (311)
T KOG0315|consen 110 WDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQS-------------GNIRVWDLGENSCTHELIPEDD--------- 167 (311)
T ss_pred EeccCcccchhccCCCCcceEEecCCcceEEeecCC-------------CcEEEEEccCCccccccCCCCC---------
Confidence 787 4466666655 788899999998888776443 4899999986643332222211
Q ss_pred ccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCC-CCCeEEe---ecccceeeeeeecCCceEEE
Q 004456 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG-EKPEILH---KLDLRFRSVSWCDDSLALVN 315 (752)
Q Consensus 240 ~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~l~---~~~~~~~~~~~spDg~~l~~ 315 (752)
..++.++..|||+. |+-+. .++.+|+|++..... .+...+. ..++.+..-.+|||+|+|+.
T Consensus 168 --~~i~sl~v~~dgsm-l~a~n------------nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat 232 (311)
T KOG0315|consen 168 --TSIQSLTVMPDGSM-LAAAN------------NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLAT 232 (311)
T ss_pred --cceeeEEEcCCCcE-EEEec------------CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEe
Confidence 23778999999997 54443 566899998732111 1222222 33445666779999999998
Q ss_pred eeecccCceeEEEEcCCCCCccc-eeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCC
Q 004456 316 ETWYKTSQTRTWLVCPGSKDVAP-RVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNI 394 (752)
Q Consensus 316 ~~~~~~~~~~l~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 394 (752)
.+ ....+++++.++- ... +.+..+. .++.. -+||.||+||+-.+.+
T Consensus 233 ~s----sdktv~iwn~~~~-~kle~~l~gh~-rWvWd------c~FS~dg~YlvTassd--------------------- 279 (311)
T KOG0315|consen 233 CS----SDKTVKIWNTDDF-FKLELVLTGHQ-RWVWD------CAFSADGEYLVTASSD--------------------- 279 (311)
T ss_pred ec----CCceEEEEecCCc-eeeEEEeecCC-ceEEe------eeeccCccEEEecCCC---------------------
Confidence 77 3345677776663 122 2333222 22211 2479999999887622
Q ss_pred CeeEEEecCCCceeEEeecc
Q 004456 395 PFLDLFDINTGSKERIWESN 414 (752)
Q Consensus 395 ~~l~~~d~~~g~~~~l~~~~ 414 (752)
....+||+..++..+.+...
T Consensus 280 ~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 280 HTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred CceeecccccCceeeecCCc
Confidence 13678899988887776543
No 93
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=99.52 E-value=1.9e-13 Score=137.26 Aligned_cols=213 Identities=25% Similarity=0.354 Sum_probs=133.7
Q ss_pred CCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCC
Q 004456 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG 570 (752)
Q Consensus 491 ~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g 570 (752)
||.+|.+.+|+| +.. ..+++|+||..|+.+...... .... ............|+++||+|+. .+.+|.|
T Consensus 1 DGv~L~adv~~P-~~~--~~~~~P~il~~tpY~~~~~~~-~~~~----~~~~~~~~~~~~~~~~GY~vV~---~D~RG~g 69 (272)
T PF02129_consen 1 DGVRLAADVYRP-GAD--GGGPFPVILTRTPYGKGDQTA-SDLA----GANPGPPSARRPFAERGYAVVV---QDVRGTG 69 (272)
T ss_dssp TS-EEEEEEEEE---T--TSSSEEEEEEEESSTCTC-HH-HHHH----TTCHHSHGGGHHHHHTT-EEEE---EE-TTST
T ss_pred CCCEEEEEEEec-CCC--CCCcccEEEEccCcCCCCCcc-cchh----hhhcccchhHHHHHhCCCEEEE---ECCcccc
Confidence 688999999999 211 245799999999854110000 0000 0000000011238999999999 5666777
Q ss_pred CCCCCchh-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC---ccCc
Q 004456 571 DKLPNDRF-VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT---PFGF 646 (752)
Q Consensus 571 ~~~~~~~~-~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~---~~~~ 646 (752)
.+...... .....+|..++|+|+.++++.+ .||+++|.|++|+.++.+|+..|..++|++..++..|.... +-+.
T Consensus 70 ~S~G~~~~~~~~e~~D~~d~I~W~~~Qpws~-G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~ 148 (272)
T PF02129_consen 70 GSEGEFDPMSPNEAQDGYDTIEWIAAQPWSN-GKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGA 148 (272)
T ss_dssp TS-S-B-TTSHHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTE
T ss_pred cCCCccccCChhHHHHHHHHHHHHHhCCCCC-CeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCc
Confidence 77555444 6788999999999999997644 69999999999999999999888899999999887764431 1110
Q ss_pred ccc-ccchh---------------------h-------------------------------hHHHHHhcChhhhcCCCC
Q 004456 647 QTE-FRTLW---------------------E-------------------------------ATNVYIEMSPITHANKIK 673 (752)
Q Consensus 647 ~~~-~~~~~---------------------~-------------------------------~~~~~~~~~~~~~~~~~~ 673 (752)
... ....| . ..+.|.+.++...+.+++
T Consensus 149 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i~ 228 (272)
T PF02129_consen 149 FRLGFFAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKID 228 (272)
T ss_dssp EBCCHHHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG--
T ss_pred ccccchhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhCC
Confidence 000 00001 0 001122223444568899
Q ss_pred CCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCC-CcEEEEEeCCCCcc
Q 004456 674 KPILIIHGEVDDKVGLFPMQAERFFDALKGHG-ALSRLVLLPFEHHV 719 (752)
Q Consensus 674 ~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~H~ 719 (752)
+|+|+++|-.|... ...+.+.+++++..+ ++.++++-|. +|+
T Consensus 229 vP~l~v~Gw~D~~~---~~~~~~~~~~l~~~~~~~~~Liigpw-~H~ 271 (272)
T PF02129_consen 229 VPVLIVGGWYDTLF---LRGALRAYEALRAPGSKPQRLIIGPW-THG 271 (272)
T ss_dssp SEEEEEEETTCSST---SHHHHHHHHHHCTTSTC-EEEEEESE-STT
T ss_pred CCEEEecccCCccc---chHHHHHHHHhhcCCCCCCEEEEeCC-CCC
Confidence 99999999999654 467888999999887 6778888775 474
No 94
>PRK06489 hypothetical protein; Provisional
Probab=99.52 E-value=7.7e-13 Score=138.94 Aligned_cols=173 Identities=18% Similarity=0.221 Sum_probs=106.8
Q ss_pred hCCcEEEecCCCCCCCCCCCCCCch---------hHHHHHHHHHHHHHHHHHcCCCCCCcEE-EEEeChHHHHHHHHHHh
Q 004456 553 ARRFAVLAGPSIPIIGEGDKLPNDR---------FVEQLVSSAEAAVEEVVRRGVADPSRIA-VGGHSYGAFMTAHLLAH 622 (752)
Q Consensus 553 ~~G~~v~~~~~~~~~g~g~~~~~~~---------~~~~~~~d~~~~~~~l~~~~~~d~~~i~-l~G~S~GG~~a~~~~~~ 622 (752)
.++|.|++ .+.+|+|.+..+.. ......+++ +..+.+.- +.+++. |+||||||++|+.++.+
T Consensus 103 ~~~~~Via---~Dl~GhG~S~~p~~~~~~~~~~~~~~~~a~~~---~~~l~~~l--gi~~~~~lvG~SmGG~vAl~~A~~ 174 (360)
T PRK06489 103 ASKYFIIL---PDGIGHGKSSKPSDGLRAAFPRYDYDDMVEAQ---YRLVTEGL--GVKHLRLILGTSMGGMHAWMWGEK 174 (360)
T ss_pred ccCCEEEE---eCCCCCCCCCCCCcCCCCCCCcccHHHHHHHH---HHHHHHhc--CCCceeEEEEECHHHHHHHHHHHh
Confidence 57899999 56668777643321 122333332 23333322 235674 89999999999999999
Q ss_pred CCCceeEEEEccCCCCCC------C-----------Ccc---Cccc-c-c-c--------------------ch-hhh--
Q 004456 623 APHLFCCGIARSGSYNKT------L-----------TPF---GFQT-E-F-R--------------------TL-WEA-- 656 (752)
Q Consensus 623 ~p~~~~~~v~~~~~~~~~------~-----------~~~---~~~~-~-~-~--------------------~~-~~~-- 656 (752)
+|++++++|++++..... . ..+ .+.. . . . .. ...
T Consensus 175 ~P~~V~~LVLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (360)
T PRK06489 175 YPDFMDALMPMASQPTEMSGRNWMWRRMLIESIRNDPAWNNGNYTTQPPSLKRANPMFAIATSGGTLAYQAQAPTRAAAD 254 (360)
T ss_pred CchhhheeeeeccCcccccHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHhcCChHHHH
Confidence 999999999887642100 0 000 0000 0 0 0 00 000
Q ss_pred --------------HHHH-------HhcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHH--HHHHHHHHhCCCcEEEEEe
Q 004456 657 --------------TNVY-------IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQA--ERFFDALKGHGALSRLVLL 713 (752)
Q Consensus 657 --------------~~~~-------~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~--~~~~~~l~~~~~~~~~~~~ 713 (752)
...+ ...+....+.++++|+|+++|++|..+| +..+ +.+.+.+. ..+++++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~I~~PvLvI~G~~D~~~p--~~~~~~~~la~~ip----~a~l~~i 328 (360)
T PRK06489 255 KLVDERLAAPVTADANDFLYQWDSSRDYNPSPDLEKIKAPVLAINSADDERNP--PETGVMEAALKRVK----HGRLVLI 328 (360)
T ss_pred HHHHHHHHhhhhcCHHHHHHHHHHhhccChHHHHHhCCCCEEEEecCCCcccC--hhhHHHHHHHHhCc----CCeEEEE
Confidence 0000 0011223456789999999999999998 7654 45555443 3589999
Q ss_pred CCC----CccCCccccHHHHHHHHHHHHHHHh
Q 004456 714 PFE----HHVYAARENVMHVIWETDRWLQKYC 741 (752)
Q Consensus 714 ~~~----~H~~~~~~~~~~~~~~~~~fl~~~l 741 (752)
|++ ||... +.++.+.+.+.+||+++-
T Consensus 329 ~~a~~~~GH~~~--e~P~~~~~~i~~FL~~~~ 358 (360)
T PRK06489 329 PASPETRGHGTT--GSAKFWKAYLAEFLAQVP 358 (360)
T ss_pred CCCCCCCCcccc--cCHHHHHHHHHHHHHhcc
Confidence 995 99874 578899999999998753
No 95
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.52 E-value=3.5e-13 Score=133.91 Aligned_cols=190 Identities=14% Similarity=0.120 Sum_probs=116.5
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 004456 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEE 592 (752)
Q Consensus 513 ~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~ 592 (752)
.|.||++||.+.. ...| ......| ..+|.|++ .+.+|+|.+..... .++.+.++.
T Consensus 4 ~~~iv~~HG~~~~-----------~~~~----~~~~~~l-~~~~~vi~---~d~~G~G~s~~~~~------~~~~~~~~~ 58 (245)
T TIGR01738 4 NVHLVLIHGWGMN-----------AEVF----RCLDEEL-SAHFTLHL---VDLPGHGRSRGFGP------LSLADAAEA 58 (245)
T ss_pred CceEEEEcCCCCc-----------hhhH----HHHHHhh-ccCeEEEE---ecCCcCccCCCCCC------cCHHHHHHH
Confidence 3789999995311 0111 1233344 46799999 55667776543221 112233333
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC---ccCcc------------cccc---chh
Q 004456 593 VVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT---PFGFQ------------TEFR---TLW 654 (752)
Q Consensus 593 l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~---~~~~~------------~~~~---~~~ 654 (752)
+.+.. .+++.++||||||++++.++.++|++++++|++++....... ...+. .... ..+
T Consensus 59 ~~~~~---~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (245)
T TIGR01738 59 IAAQA---PDPAIWLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERF 135 (245)
T ss_pred HHHhC---CCCeEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHH
Confidence 33332 268999999999999999999999999999988764321100 00000 0000 000
Q ss_pred ------------hhH----H------------------HHHhcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHH
Q 004456 655 ------------EAT----N------------------VYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDA 700 (752)
Q Consensus 655 ------------~~~----~------------------~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~ 700 (752)
... . .+...+....+.++++|+|+++|++|..+| ....+.+.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~~~--~~~~~~~~~~ 213 (245)
T TIGR01738 136 LALQTLGTPTARQDARALKQTLLARPTPNVQVLQAGLEILATVDLRQPLQNISVPFLRLYGYLDGLVP--AKVVPYLDKL 213 (245)
T ss_pred HHHHHhcCCccchHHHHHHHHhhccCCCCHHHHHHHHHHhhcccHHHHHhcCCCCEEEEeecCCcccC--HHHHHHHHHh
Confidence 000 0 000111123456789999999999999998 7776666554
Q ss_pred HHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHH
Q 004456 701 LKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 737 (752)
Q Consensus 701 l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 737 (752)
+ ..+++++++++||... .+.+..+.+.+.+|+
T Consensus 214 ~----~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fi 245 (245)
T TIGR01738 214 A----PHSELYIFAKAAHAPF-LSHAEAFCALLVAFK 245 (245)
T ss_pred C----CCCeEEEeCCCCCCcc-ccCHHHHHHHHHhhC
Confidence 4 3468999999999876 567888888888885
No 96
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=99.52 E-value=1.6e-13 Score=129.15 Aligned_cols=190 Identities=22% Similarity=0.222 Sum_probs=113.1
Q ss_pred EEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHH-hCCcEEEecCCCCCCCCCCCC
Q 004456 495 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIPIIGEGDKL 573 (752)
Q Consensus 495 ~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~~~~~~~g~g~~~ 573 (752)
|...+|.|++.. +++.|+||++||++... ..+.... . ...++ +.||+|+.+...........+
T Consensus 1 l~Y~lYvP~~~~---~~~~PLVv~LHG~~~~a-----------~~~~~~s-~-~~~lAd~~GfivvyP~~~~~~~~~~cw 64 (220)
T PF10503_consen 1 LSYRLYVPPGAP---RGPVPLVVVLHGCGQSA-----------EDFAAGS-G-WNALADREGFIVVYPEQSRRANPQGCW 64 (220)
T ss_pred CcEEEecCCCCC---CCCCCEEEEeCCCCCCH-----------HHHHhhc-C-HHHHhhcCCeEEEcccccccCCCCCcc
Confidence 356899998753 23589999999975432 1121111 1 12344 589999984432110000110
Q ss_pred ---C-CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC-CccC-cc
Q 004456 574 ---P-NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL-TPFG-FQ 647 (752)
Q Consensus 574 ---~-~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~-~~~~-~~ 647 (752)
. ...........+.++++++.++..+|++||++.|+|.||+|+..+++.+|+.|+++..+++..--.. .... +.
T Consensus 65 ~w~~~~~~~g~~d~~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a~~~~~a~~ 144 (220)
T PF10503_consen 65 NWFSDDQQRGGGDVAFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCAASGASALS 144 (220)
T ss_pred cccccccccCccchhhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccccccccCcccHHH
Confidence 0 0111122345567888999999999999999999999999999999999999999999887531000 0000 00
Q ss_pred ccccchhhhHHHHHhcChhhhc-CCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhC
Q 004456 648 TEFRTLWEATNVYIEMSPITHA-NKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGH 704 (752)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~ 704 (752)
......-..+..... ..... ..-..|++++||+.|..|. +.++.++.+.+...
T Consensus 145 ~m~~g~~~~p~~~~~--a~~~~g~~~~~P~~v~hG~~D~tV~--~~n~~~~~~q~~~~ 198 (220)
T PF10503_consen 145 AMRSGPRPAPAAAWG--ARSDAGAYPGYPRIVFHGTADTTVN--PQNADQLVAQWLNV 198 (220)
T ss_pred HhhCCCCCChHHHHH--hhhhccCCCCCCEEEEecCCCCccC--cchHHHHHHHHHHc
Confidence 000000000100000 00001 1113699999999999998 89999988887653
No 97
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.52 E-value=3.5e-13 Score=134.38 Aligned_cols=195 Identities=17% Similarity=0.102 Sum_probs=115.4
Q ss_pred eEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCCchhHHHHHHHHHHH-HHH
Q 004456 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAA-VEE 592 (752)
Q Consensus 514 P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~-~~~ 592 (752)
|+||++||.+... .. +......|+ +||.|++ .+.+|+|.+..+........++..+. +..
T Consensus 2 ~~vv~~hG~~~~~-----------~~----~~~~~~~L~-~~~~v~~---~d~~g~G~s~~~~~~~~~~~~~~~~~~~~~ 62 (251)
T TIGR03695 2 PVLVFLHGFLGSG-----------AD----WQALIELLG-PHFRCLA---IDLPGHGSSQSPDEIERYDFEEAAQDILAT 62 (251)
T ss_pred CEEEEEcCCCCch-----------hh----HHHHHHHhc-ccCeEEE---EcCCCCCCCCCCCccChhhHHHHHHHHHHH
Confidence 7899999953211 11 123455666 8999999 55667776644322111122222222 333
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc-----c-------------C---------
Q 004456 593 VVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP-----F-------------G--------- 645 (752)
Q Consensus 593 l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~-----~-------------~--------- 645 (752)
+.+. .+.+++.++|||+||.+++.++.++|+.+++++++++........ . .
T Consensus 63 ~~~~--~~~~~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (251)
T TIGR03695 63 LLDQ--LGIEPFFLVGYSMGGRIALYYALQYPERVQGLILESGSPGLATEEERAARRQNDEQLAQRFEQEGLEAFLDDWY 140 (251)
T ss_pred HHHH--cCCCeEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCCcCchHhhhhhhhcchhhhhHHHhcCccHHHHHHh
Confidence 3333 234789999999999999999999999999999988753311000 0 0
Q ss_pred ----ccccc-cchhhh---------------HHHHH------hcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHH
Q 004456 646 ----FQTEF-RTLWEA---------------TNVYI------EMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFD 699 (752)
Q Consensus 646 ----~~~~~-~~~~~~---------------~~~~~------~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~ 699 (752)
+.... ...... ...+. ..+....+.++++|+|+++|++|..++ .. .+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~---~~----~~ 213 (251)
T TIGR03695 141 QQPLFASQKNLPPEQRQALRAKRLANNPEGLAKMLRATGLGKQPSLWPKLQALTIPVLYLCGEKDEKFV---QI----AK 213 (251)
T ss_pred cCceeeecccCChHHhHHHHHhcccccchHHHHHHHHhhhhcccchHHHhhCCCCceEEEeeCcchHHH---HH----HH
Confidence 00000 000000 00000 011223356788999999999997643 22 23
Q ss_pred HHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHH
Q 004456 700 ALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 737 (752)
Q Consensus 700 ~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 737 (752)
.+.+.....+++++|++||... .+.++.+...+.+||
T Consensus 214 ~~~~~~~~~~~~~~~~~gH~~~-~e~~~~~~~~i~~~l 250 (251)
T TIGR03695 214 EMQKLLPNLTLVIIANAGHNIH-LENPEAFAKILLAFL 250 (251)
T ss_pred HHHhcCCCCcEEEEcCCCCCcC-ccChHHHHHHHHHHh
Confidence 3444445678999999999866 455778888888887
No 98
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.52 E-value=7e-13 Score=135.74 Aligned_cols=198 Identities=13% Similarity=0.082 Sum_probs=123.6
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCCc--hhHHHHHHHHHHHH
Q 004456 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND--RFVEQLVSSAEAAV 590 (752)
Q Consensus 513 ~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~--~~~~~~~~d~~~~~ 590 (752)
.|.||++||.+... ..| ...+..|++++ .|++ .+.+|+|.+..+. .......+|+.+.+
T Consensus 27 g~~vvllHG~~~~~-----------~~w----~~~~~~L~~~~-~via---~D~~G~G~S~~~~~~~~~~~~a~dl~~ll 87 (295)
T PRK03592 27 GDPIVFLHGNPTSS-----------YLW----RNIIPHLAGLG-RCLA---PDLIGMGASDKPDIDYTFADHARYLDAWF 87 (295)
T ss_pred CCEEEEECCCCCCH-----------HHH----HHHHHHHhhCC-EEEE---EcCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 37899999964211 111 23455666665 9999 5667877775432 23455556665555
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC---Cc---------cCccc--c-----c-
Q 004456 591 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL---TP---------FGFQT--E-----F- 650 (752)
Q Consensus 591 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~---~~---------~~~~~--~-----~- 650 (752)
+.+ ..+++.++||||||.+|+.++.++|++++++|++++...... .. +.... . .
T Consensus 88 ~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (295)
T PRK03592 88 DAL------GLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPMTWDDFPPAVRELFQALRSPGEGEEMVLEEN 161 (295)
T ss_pred HHh------CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECCCCCCcchhhcchhHHHHHHHHhCcccccccccchh
Confidence 544 236899999999999999999999999999999886421100 00 00000 0 0
Q ss_pred -------cc----hh--hhHHHHH-----------------hcC--------------hhhhcCCCCCCEEEEEeCCCCC
Q 004456 651 -------RT----LW--EATNVYI-----------------EMS--------------PITHANKIKKPILIIHGEVDDK 686 (752)
Q Consensus 651 -------~~----~~--~~~~~~~-----------------~~~--------------~~~~~~~~~~P~li~~G~~D~~ 686 (752)
.. .. +....+. ... ....+.++++|+|+++|++|..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~ 241 (295)
T PRK03592 162 VFIERVLPGSILRPLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVEEYAQWLATSDVPKLLINAEPGAI 241 (295)
T ss_pred hHHhhcccCcccccCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhhHhHHHhccCCCCeEEEeccCCcc
Confidence 00 00 0000000 000 0112356789999999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHHHHh
Q 004456 687 VGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 741 (752)
Q Consensus 687 v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 741 (752)
++ +....++...+. .+.++++++++||... .+.++.+.+.+.+|+.+..
T Consensus 242 ~~--~~~~~~~~~~~~---~~~~~~~i~~~gH~~~-~e~p~~v~~~i~~fl~~~~ 290 (295)
T PRK03592 242 LT--TGAIRDWCRSWP---NQLEITVFGAGLHFAQ-EDSPEEIGAAIAAWLRRLR 290 (295)
T ss_pred cC--cHHHHHHHHHhh---hhcceeeccCcchhhh-hcCHHHHHHHHHHHHHHhc
Confidence 85 444444443332 2357899999999876 5678899999999998764
No 99
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.52 E-value=1.8e-12 Score=137.21 Aligned_cols=204 Identities=17% Similarity=0.077 Sum_probs=122.8
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCCch---hHHHHHHHHHHH
Q 004456 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDR---FVEQLVSSAEAA 589 (752)
Q Consensus 513 ~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~---~~~~~~~d~~~~ 589 (752)
.|.||++||.+.. ...+......|+ ++|.|++ .+.+|+|.+..+.. ........+.+.
T Consensus 105 ~p~vvllHG~~~~---------------~~~~~~~~~~L~-~~~~vi~---~D~rG~G~S~~~~~~~~~~~~~~~~~~~~ 165 (402)
T PLN02894 105 APTLVMVHGYGAS---------------QGFFFRNFDALA-SRFRVIA---IDQLGWGGSSRPDFTCKSTEETEAWFIDS 165 (402)
T ss_pred CCEEEEECCCCcc---------------hhHHHHHHHHHH-hCCEEEE---ECCCCCCCCCCCCcccccHHHHHHHHHHH
Confidence 5899999996421 011112344454 4699999 56677777644321 111222222222
Q ss_pred -HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC-c---------cCc------------
Q 004456 590 -VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT-P---------FGF------------ 646 (752)
Q Consensus 590 -~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~-~---------~~~------------ 646 (752)
.+++... +.+++.|+||||||++++.++.++|++++++|+++|..-.... . ..+
T Consensus 166 i~~~~~~l---~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (402)
T PLN02894 166 FEEWRKAK---NLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAGFSSESDDKSEWLTKFRATWKGAVLNHLWESN 242 (402)
T ss_pred HHHHHHHc---CCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCccccCCcchhHHHHhhcchhHHHHHHHHHhhcC
Confidence 3444433 3468999999999999999999999999999988765211000 0 000
Q ss_pred --cc---------------c----------cc--chhhhHHHH---------------------------HhcChhhhcC
Q 004456 647 --QT---------------E----------FR--TLWEATNVY---------------------------IEMSPITHAN 670 (752)
Q Consensus 647 --~~---------------~----------~~--~~~~~~~~~---------------------------~~~~~~~~~~ 670 (752)
+. . .. ........+ ...+....+.
T Consensus 243 ~~p~~~~~~~gp~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 322 (402)
T PLN02894 243 FTPQKIIRGLGPWGPNLVRRYTTARFGAHSTGDILSEEESKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLESAS 322 (402)
T ss_pred CCHHHHHHhccchhHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHhhcCCCchHHHHHHhccCchhhcchHhhhcc
Confidence 00 0 00 000000000 0011112356
Q ss_pred CCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHHHHhcCCC
Q 004456 671 KIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLSNT 745 (752)
Q Consensus 671 ~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~~~ 745 (752)
++++|+++++|++|.+++ ....++.+.+ +..+++++++++||... .+++..+.+.+.+|++..+..+.
T Consensus 323 ~I~vP~liI~G~~D~i~~---~~~~~~~~~~---~~~~~~~~i~~aGH~~~-~E~P~~f~~~l~~~~~~~~~~~~ 390 (402)
T PLN02894 323 EWKVPTTFIYGRHDWMNY---EGAVEARKRM---KVPCEIIRVPQGGHFVF-LDNPSGFHSAVLYACRKYLSPDR 390 (402)
T ss_pred cCCCCEEEEEeCCCCCCc---HHHHHHHHHc---CCCCcEEEeCCCCCeee-ccCHHHHHHHHHHHHHHhccCCc
Confidence 788999999999998654 4444443332 34578999999999765 67788999999999999987643
No 100
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=2.3e-11 Score=117.27 Aligned_cols=292 Identities=13% Similarity=0.074 Sum_probs=174.4
Q ss_pred ceeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCcc
Q 004456 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (752)
Q Consensus 5 ~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~ 84 (752)
++|+.++++. ..|+.+.+....+..+....+|+|+++.|.-+... +..++..-|-+|-+.|..+.+-......
T Consensus 16 ~gI~v~~ld~--~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~-----~~~ggvaay~iD~~~G~Lt~ln~~~~~g 88 (346)
T COG2706 16 QGIYVFNLDT--KTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEP-----GEEGGVAAYRIDPDDGRLTFLNRQTLPG 88 (346)
T ss_pred CceEEEEEeC--cccccchhhhccccCCCceEEECCCCCEEEEEEec-----CCcCcEEEEEEcCCCCeEEEeeccccCC
Confidence 5788888865 45665555544444468889999999888554332 1144456666666667766664332211
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc
Q 004456 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (752)
Q Consensus 85 ~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~ 164 (752)
.. ....+.++||++|+.+.... +.|-+..+
T Consensus 89 ~~--p~yvsvd~~g~~vf~AnY~~------------------------------------------------g~v~v~p~ 118 (346)
T COG2706 89 SP--PCYVSVDEDGRFVFVANYHS------------------------------------------------GSVSVYPL 118 (346)
T ss_pred CC--CeEEEECCCCCEEEEEEccC------------------------------------------------ceEEEEEc
Confidence 11 24568899999888764321 23333333
Q ss_pred --CCCcccc---CCc-cc----------eeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCC
Q 004456 165 --DGTAKDF---GTP-AV----------YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLP 228 (752)
Q Consensus 165 --~G~~~~l---~~~-~~----------~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~ 228 (752)
+|....+ ..+ +. .....++|||++|+......+ ++++|+++.+.........
T Consensus 119 ~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D------------ri~~y~~~dg~L~~~~~~~ 186 (346)
T COG2706 119 QADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD------------RIFLYDLDDGKLTPADPAE 186 (346)
T ss_pred ccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc------------eEEEEEcccCccccccccc
Confidence 4532222 111 21 557789999999999876653 7899988855444433332
Q ss_pred CCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEe---------eccc
Q 004456 229 PAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH---------KLDL 299 (752)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~---------~~~~ 299 (752)
.. ...|+|.+.|+|+||. .|.+...++ .-.++-++- ..++...|. .+..
T Consensus 187 v~---------~G~GPRHi~FHpn~k~-aY~v~EL~s---------tV~v~~y~~---~~g~~~~lQ~i~tlP~dF~g~~ 244 (346)
T COG2706 187 VK---------PGAGPRHIVFHPNGKY-AYLVNELNS---------TVDVLEYNP---AVGKFEELQTIDTLPEDFTGTN 244 (346)
T ss_pred cC---------CCCCcceEEEcCCCcE-EEEEeccCC---------EEEEEEEcC---CCceEEEeeeeccCccccCCCC
Confidence 21 2356899999999997 677764322 223333333 233333332 1223
Q ss_pred ceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcce
Q 004456 300 RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQI 379 (752)
Q Consensus 300 ~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~ 379 (752)
....+..||||+.|+. +++......+|.++..++ ....+.....+. ..|. .|..+++|+.|+.+.++
T Consensus 245 ~~aaIhis~dGrFLYa-sNRg~dsI~~f~V~~~~g--~L~~~~~~~teg--~~PR--~F~i~~~g~~Liaa~q~------ 311 (346)
T COG2706 245 WAAAIHISPDGRFLYA-SNRGHDSIAVFSVDPDGG--KLELVGITPTEG--QFPR--DFNINPSGRFLIAANQK------ 311 (346)
T ss_pred ceeEEEECCCCCEEEE-ecCCCCeEEEEEEcCCCC--EEEEEEEeccCC--cCCc--cceeCCCCCEEEEEccC------
Confidence 4566779999996555 455555667788887774 222221111111 0011 25579999999998754
Q ss_pred EEEEccCCCCCCCCCCeeEEEecCCCceeEEee
Q 004456 380 YILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 412 (752)
Q Consensus 380 ~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~ 412 (752)
.+.-.++.+|.+||+++.+..
T Consensus 312 ------------sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 312 ------------SDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred ------------CCcEEEEEEcCCCceEEeccc
Confidence 344578999999999887744
No 101
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.50 E-value=7.3e-13 Score=135.29 Aligned_cols=195 Identities=16% Similarity=0.135 Sum_probs=115.7
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCCc-----hhHHHHHHHHH
Q 004456 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND-----RFVEQLVSSAE 587 (752)
Q Consensus 513 ~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~-----~~~~~~~~d~~ 587 (752)
.|.||++||++.. ...+.......+.+.||.|++ .+.+|+|.+.... .......+|+.
T Consensus 25 ~~~vl~~hG~~g~--------------~~~~~~~~~~~l~~~g~~vi~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~~ 87 (288)
T TIGR01250 25 KIKLLLLHGGPGM--------------SHEYLENLRELLKEEGREVIM---YDQLGCGYSDQPDDSDELWTIDYFVDELE 87 (288)
T ss_pred CCeEEEEcCCCCc--------------cHHHHHHHHHHHHhcCCEEEE---EcCCCCCCCCCCCcccccccHHHHHHHHH
Confidence 4788999996311 011111223334445999999 5556777664331 12334444444
Q ss_pred HHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc-------cCccc---------ccc
Q 004456 588 AAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP-------FGFQT---------EFR 651 (752)
Q Consensus 588 ~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~-------~~~~~---------~~~ 651 (752)
+.++.+ +..++.++||||||.+++.++..+|++++++|+.++........ ..+.. ...
T Consensus 88 ~~~~~~------~~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (288)
T TIGR01250 88 EVREKL------GLDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDSAPEYVKELNRLRKELPPEVRAAIKRCEAS 161 (288)
T ss_pred HHHHHc------CCCcEEEEEeehHHHHHHHHHHhCccccceeeEecccccchHHHHHHHHHHhhcChhHHHHHHHHHhc
Confidence 433322 23579999999999999999999999999999887653211000 00000 000
Q ss_pred chhhh------HHHHH------------------------------------------hcChhhhcCCCCCCEEEEEeCC
Q 004456 652 TLWEA------TNVYI------------------------------------------EMSPITHANKIKKPILIIHGEV 683 (752)
Q Consensus 652 ~~~~~------~~~~~------------------------------------------~~~~~~~~~~~~~P~li~~G~~ 683 (752)
..+.. ...+. .......+.++++|+|+++|+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~ 241 (288)
T TIGR01250 162 GDYDNPEYQEAVEVFYHHLLCRTRKWPEALKHLKSGMNTNVYNIMQGPNEFTITGNLKDWDITDKLSEIKVPTLLTVGEF 241 (288)
T ss_pred cCcchHHHHHHHHHHHHHhhcccccchHHHHHHhhccCHHHHhcccCCccccccccccccCHHHHhhccCCCEEEEecCC
Confidence 00000 00000 0011123456789999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHH
Q 004456 684 DDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 738 (752)
Q Consensus 684 D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 738 (752)
|. ++ +...+.+.+.+. ..++++++++||... .+.+.++.+.+.+||+
T Consensus 242 D~-~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 242 DT-MT--PEAAREMQELIA----GSRLVVFPDGSHMTM-IEDPEVYFKLLSDFIR 288 (288)
T ss_pred Cc-cC--HHHHHHHHHhcc----CCeEEEeCCCCCCcc-cCCHHHHHHHHHHHhC
Confidence 97 45 566665555443 357889999999876 4678888888988873
No 102
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.50 E-value=1.1e-12 Score=134.60 Aligned_cols=216 Identities=16% Similarity=0.150 Sum_probs=122.6
Q ss_pred EEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCC
Q 004456 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 566 (752)
Q Consensus 487 ~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~ 566 (752)
+...+|.++.....-++ + .+.||++||++... . .......+...+|.|++ .+.
T Consensus 9 ~~~~~~~~l~y~~~g~~------~--~~~lvllHG~~~~~-------------~---~~~~~~~~~~~~~~vi~---~D~ 61 (306)
T TIGR01249 9 LNVSDNHQLYYEQSGNP------D--GKPVVFLHGGPGSG-------------T---DPGCRRFFDPETYRIVL---FDQ 61 (306)
T ss_pred EEcCCCcEEEEEECcCC------C--CCEEEEECCCCCCC-------------C---CHHHHhccCccCCEEEE---ECC
Confidence 33446666665443211 1 35689999964211 0 11122234457899999 566
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCC------
Q 004456 567 IGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT------ 640 (752)
Q Consensus 567 ~g~g~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~------ 640 (752)
+|+|.+............++.+.+..+.+.- +.+++.++||||||++++.++.++|++++++|+.++.....
T Consensus 62 ~G~G~S~~~~~~~~~~~~~~~~dl~~l~~~l--~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~ 139 (306)
T TIGR01249 62 RGCGKSTPHACLEENTTWDLVADIEKLREKL--GIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFLLREKEWSWF 139 (306)
T ss_pred CCCCCCCCCCCcccCCHHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHHChHhhhhheeeccccCCHHHHHHH
Confidence 7787775432111111223333333333332 23579999999999999999999999999888876542110
Q ss_pred -------CCc-----c--Ccc-ccc--------------c---------chhhhHH----------------------HH
Q 004456 641 -------LTP-----F--GFQ-TEF--------------R---------TLWEATN----------------------VY 660 (752)
Q Consensus 641 -------~~~-----~--~~~-~~~--------------~---------~~~~~~~----------------------~~ 660 (752)
..+ + ... ... . ..|.... .+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (306)
T TIGR01249 140 YEGGASMIYPDAWQRFMDSIPENERNEQLVNAYHDRLQSGDEETKLAAAKAWVDWESTTLLRPINEIVSTAEDFKFSLAF 219 (306)
T ss_pred HhcchhhhCHHHHHHHhhhCChhhhhccHHHHHHHHccCCCHHHHHHHHHHHHHHhChhhcCCCCCccccccchHHHHHH
Confidence 000 0 000 000 0 0000000 00
Q ss_pred Hh-----------cC----hhhhcCCC-CCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccc
Q 004456 661 IE-----------MS----PITHANKI-KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARE 724 (752)
Q Consensus 661 ~~-----------~~----~~~~~~~~-~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~ 724 (752)
.. .+ ....+.++ ++|+|++||++|.++| ...++++.+.+. ..++++++++||....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~lii~g~~D~~~p--~~~~~~~~~~~~----~~~~~~~~~~gH~~~~-- 291 (306)
T TIGR01249 220 ARLENHYFVNKGFLDVENFILDNISKIRNIPTYIVHGRYDLCCP--LQSAWALHKAFP----EAELKVTNNAGHSAFD-- 291 (306)
T ss_pred HHHHHhHHHHhchhcCchHHHHhhhhccCCCeEEEecCCCCCCC--HHHHHHHHHhCC----CCEEEEECCCCCCCCC--
Confidence 00 00 01123455 5899999999999998 888877777653 3589999999998653
Q ss_pred cHHHHHHHHHHHHHHHh
Q 004456 725 NVMHVIWETDRWLQKYC 741 (752)
Q Consensus 725 ~~~~~~~~~~~fl~~~l 741 (752)
....+.+.+|+++.|
T Consensus 292 --~~~~~~i~~~~~~~~ 306 (306)
T TIGR01249 292 --PNNLAALVHALETYL 306 (306)
T ss_pred --hHHHHHHHHHHHHhC
Confidence 335567777776653
No 103
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.49 E-value=6.1e-13 Score=133.19 Aligned_cols=190 Identities=12% Similarity=0.077 Sum_probs=115.0
Q ss_pred eEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 004456 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEV 593 (752)
Q Consensus 514 P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~l 593 (752)
|.||++||.+... ..| ..+...| +..|.|++ .+.+|+|.+.....+ .++ +.++.+
T Consensus 14 ~~ivllHG~~~~~-----------~~w----~~~~~~L-~~~~~vi~---~Dl~G~G~S~~~~~~---~~~---~~~~~l 68 (256)
T PRK10349 14 VHLVLLHGWGLNA-----------EVW----RCIDEEL-SSHFTLHL---VDLPGFGRSRGFGAL---SLA---DMAEAV 68 (256)
T ss_pred CeEEEECCCCCCh-----------hHH----HHHHHHH-hcCCEEEE---ecCCCCCCCCCCCCC---CHH---HHHHHH
Confidence 5699999954211 111 1234444 45699999 566777766433211 112 222333
Q ss_pred HHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC--C-ccCc-----------cccccc---hh--
Q 004456 594 VRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL--T-PFGF-----------QTEFRT---LW-- 654 (752)
Q Consensus 594 ~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~--~-~~~~-----------~~~~~~---~~-- 654 (752)
.+. ..+++.++||||||++|+.++.++|++++++|++++...... . .... ...... .+
T Consensus 69 ~~~---~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (256)
T PRK10349 69 LQQ---APDKAIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLA 145 (256)
T ss_pred Hhc---CCCCeEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHH
Confidence 332 236899999999999999999999999999998876321100 0 0000 000000 00
Q ss_pred ----------hhH----------------------HHHHhcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHH
Q 004456 655 ----------EAT----------------------NVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALK 702 (752)
Q Consensus 655 ----------~~~----------------------~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~ 702 (752)
... ..+...+....+.++++|+|+++|++|..+| ...++.+.+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~i- 222 (256)
T PRK10349 146 LQTMGTETARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVP--RKVVPMLDKLW- 222 (256)
T ss_pred HHHccCchHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHHHhhcCCCeEEEecCCCccCC--HHHHHHHHHhC-
Confidence 000 0001112223456788999999999999988 76665554444
Q ss_pred hCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHH
Q 004456 703 GHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 738 (752)
Q Consensus 703 ~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 738 (752)
...+++++|++||... .+.++.+.+.+.+|-.
T Consensus 223 ---~~~~~~~i~~~gH~~~-~e~p~~f~~~l~~~~~ 254 (256)
T PRK10349 223 ---PHSESYIFAKAAHAPF-ISHPAEFCHLLVALKQ 254 (256)
T ss_pred ---CCCeEEEeCCCCCCcc-ccCHHHHHHHHHHHhc
Confidence 3458999999999876 5778888888887743
No 104
>PLN02872 triacylglycerol lipase
Probab=99.49 E-value=9.5e-13 Score=137.05 Aligned_cols=245 Identities=16% Similarity=0.109 Sum_probs=150.6
Q ss_pred CCCceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccC--CCCchhHHHHHhCC
Q 004456 478 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFS--GMTPTSSLIFLARR 555 (752)
Q Consensus 478 ~~~~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~G 555 (752)
..+++|+..+.+.||..+....+.+.... ....+.|.|+++||.+... ..|. ......+..|+++|
T Consensus 40 ~gy~~e~h~v~T~DGy~L~l~ri~~~~~~-~~~~~~~~Vll~HGl~~ss-----------~~w~~~~~~~sla~~La~~G 107 (395)
T PLN02872 40 AGYSCTEHTIQTKDGYLLALQRVSSRNPR-LGSQRGPPVLLQHGLFMAG-----------DAWFLNSPEQSLGFILADHG 107 (395)
T ss_pred cCCCceEEEEECCCCcEEEEEEcCCCCCC-CCCCCCCeEEEeCcccccc-----------cceeecCcccchHHHHHhCC
Confidence 45789999999999988877666433211 1112368899999964221 1121 11123455788999
Q ss_pred cEEEecCCCCCCC-CCCCC---C-----CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-
Q 004456 556 FAVLAGPSIPIIG-EGDKL---P-----NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH- 625 (752)
Q Consensus 556 ~~v~~~~~~~~~g-~g~~~---~-----~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~- 625 (752)
|.|++.+.++... +|... . ...+.+....|+.++++++.+.. .+++.++||||||.+++.++ .+|+
T Consensus 108 ydV~l~n~RG~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~~ 183 (395)
T PLN02872 108 FDVWVGNVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPNV 183 (395)
T ss_pred CCcccccccccccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChHH
Confidence 9999955443210 12111 1 11122333479999999998653 36899999999999998555 5565
Q ss_pred --ceeEEEEccCCCCCCC--Cc----------------cCc----c------------cccc--------------c---
Q 004456 626 --LFCCGIARSGSYNKTL--TP----------------FGF----Q------------TEFR--------------T--- 652 (752)
Q Consensus 626 --~~~~~v~~~~~~~~~~--~~----------------~~~----~------------~~~~--------------~--- 652 (752)
.++++++++|..-... .+ ++. + +... .
T Consensus 184 ~~~v~~~~~l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~~~g~~~~~n 263 (395)
T PLN02872 184 VEMVEAAALLCPISYLDHVTAPLVLRMVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSICEGHMDCNDLLTSITGTNCCFN 263 (395)
T ss_pred HHHHHHHHHhcchhhhccCCCHHHHHHHHHhHHHHHHHhcCceecCCcHHHHHHHHHHccCchhHHHHHHHHhCCCcccc
Confidence 4666677776521000 00 000 0 0000 0
Q ss_pred -----------h----------h-----------------hhHHHHHhc-ChhhhcCCC--CCCEEEEEeCCCCCCCCCH
Q 004456 653 -----------L----------W-----------------EATNVYIEM-SPITHANKI--KKPILIIHGEVDDKVGLFP 691 (752)
Q Consensus 653 -----------~----------~-----------------~~~~~~~~~-~~~~~~~~~--~~P~li~~G~~D~~v~~~~ 691 (752)
+ | .+...|... .|...+.++ ++|+++++|++|..++ +
T Consensus 264 ~~~~~~~~~~~pagtS~k~~~H~~Q~~~s~~f~~yDyg~~~n~~~Yg~~~pP~Y~l~~i~~~~Pv~i~~G~~D~lv~--~ 341 (395)
T PLN02872 264 ASRIDYYLEYEPHPSSVKNLRHLFQMIRKGTFAHYDYGIFKNLKLYGQVNPPAFDLSLIPKSLPLWMGYGGTDGLAD--V 341 (395)
T ss_pred hhhhhHHHhcCCCcchHHHHHHHHHHHhcCCcccCCCCchhhHHHhCCCCCCCcCcccCCCCccEEEEEcCCCCCCC--H
Confidence 0 0 000111111 233346666 5799999999999998 8
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCCcc--CCccccHHHHHHHHHHHHHHHhcC
Q 004456 692 MQAERFFDALKGHGALSRLVLLPFEHHV--YAARENVMHVIWETDRWLQKYCLS 743 (752)
Q Consensus 692 ~~~~~~~~~l~~~~~~~~~~~~~~~~H~--~~~~~~~~~~~~~~~~fl~~~l~~ 743 (752)
..++.+.+.+.. ..+++.+++.+|. +...+.++.+++.+++||++++..
T Consensus 342 ~dv~~l~~~Lp~---~~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~~~~ 392 (395)
T PLN02872 342 TDVEHTLAELPS---KPELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSLGKS 392 (395)
T ss_pred HHHHHHHHHCCC---ccEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHhhhc
Confidence 888777776653 2478889999997 444667888999999999987754
No 105
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.49 E-value=2.4e-12 Score=134.64 Aligned_cols=185 Identities=16% Similarity=0.101 Sum_probs=120.3
Q ss_pred hhHHHHHhCCcEEEecCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 004456 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 625 (752)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~ 625 (752)
.++..|+++||.|++++ .+|.|.+............++.+++++++++.. ..++.++||||||.+++.+++.+|+
T Consensus 85 ~~~~~L~~~G~~V~~~D---~~g~g~s~~~~~~~d~~~~~~~~~v~~l~~~~~--~~~i~lvGhS~GG~i~~~~~~~~~~ 159 (350)
T TIGR01836 85 SLVRGLLERGQDVYLID---WGYPDRADRYLTLDDYINGYIDKCVDYICRTSK--LDQISLLGICQGGTFSLCYAALYPD 159 (350)
T ss_pred hHHHHHHHCCCeEEEEe---CCCCCHHHhcCCHHHHHHHHHHHHHHHHHHHhC--CCcccEEEECHHHHHHHHHHHhCch
Confidence 56788999999999954 445444322222222223457888999988743 4689999999999999999999999
Q ss_pred ceeEEEEccCCCCCCCCcc------------------C-ccc-----------cccchh----------hhHH---HHH-
Q 004456 626 LFCCGIARSGSYNKTLTPF------------------G-FQT-----------EFRTLW----------EATN---VYI- 661 (752)
Q Consensus 626 ~~~~~v~~~~~~~~~~~~~------------------~-~~~-----------~~~~~~----------~~~~---~~~- 661 (752)
.++++|++++..+...... + .+. .....| .+.+ .+.
T Consensus 160 ~v~~lv~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (350)
T TIGR01836 160 KIKNLVTMVTPVDFETPGNMLSNWARHVDIDLAVDTMGNIPGELLNLTFLMLKPFSLGYQKYVNLVDILEDERKVENFLR 239 (350)
T ss_pred heeeEEEeccccccCCCCchhhhhccccCHHHHHHhcCCCCHHHHHHHHHhcCcchhhhHHHHHHHHhcCChHHHHHHHH
Confidence 9999999998765321100 0 000 000000 0000 000
Q ss_pred --h--cC--h-----------------------------hhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCC
Q 004456 662 --E--MS--P-----------------------------ITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGA 706 (752)
Q Consensus 662 --~--~~--~-----------------------------~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~ 706 (752)
. .+ + ...++++++|+|+++|++|.++| +..++.+++.+.. .
T Consensus 240 ~~~w~~d~~~~~~~~~~~~~~~~~~~n~l~~g~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~--~~~~~~~~~~~~~--~ 315 (350)
T TIGR01836 240 MEKWIFDSPDQAGEAFRQFVKDFYQQNGLINGEVEIGGRKVDLKNIKMPILNIYAERDHLVP--PDASKALNDLVSS--E 315 (350)
T ss_pred HHHHhcCCcCccHHHHHHHHHHHHhcCcccCCeeEECCEEccHHhCCCCeEEEecCCCCcCC--HHHHHHHHHHcCC--C
Confidence 0 00 0 01244578999999999999999 8888888776643 4
Q ss_pred cEEEEEeCCCCccCCcc--ccHHHHHHHHHHHHHHH
Q 004456 707 LSRLVLLPFEHHVYAAR--ENVMHVIWETDRWLQKY 740 (752)
Q Consensus 707 ~~~~~~~~~~~H~~~~~--~~~~~~~~~~~~fl~~~ 740 (752)
.+++++++ +||..... ...+.+++.+.+||.++
T Consensus 316 ~~~~~~~~-~gH~~~~~~~~~~~~v~~~i~~wl~~~ 350 (350)
T TIGR01836 316 DYTELSFP-GGHIGIYVSGKAQKEVPPAIGKWLQAR 350 (350)
T ss_pred CeEEEEcC-CCCEEEEECchhHhhhhHHHHHHHHhC
Confidence 56888887 56764322 23578889999999763
No 106
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.49 E-value=7.8e-13 Score=127.23 Aligned_cols=228 Identities=18% Similarity=0.161 Sum_probs=138.0
Q ss_pred EEEcCCCcEEEEEEEe-CCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCC
Q 004456 486 KYQRKDGVPLTATLYL-PPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI 564 (752)
Q Consensus 486 ~~~~~~g~~~~~~l~~-P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 564 (752)
.+...+|..+-..... |.+ ...|+||.+||- .|+.+ +.+.......+.++||.|++ +
T Consensus 53 ~v~~pdg~~~~ldw~~~p~~------~~~P~vVl~HGL-----------~G~s~--s~y~r~L~~~~~~rg~~~Vv---~ 110 (345)
T COG0429 53 RLETPDGGFIDLDWSEDPRA------AKKPLVVLFHGL-----------EGSSN--SPYARGLMRALSRRGWLVVV---F 110 (345)
T ss_pred EEEcCCCCEEEEeeccCccc------cCCceEEEEecc-----------CCCCc--CHHHHHHHHHHHhcCCeEEE---E
Confidence 4444455555544444 433 236999999993 33222 12222456677889999999 5
Q ss_pred CCCCCCCCCC--CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHH-HHHHHHHHhCCC-ceeEEEEccCCCCCC
Q 004456 565 PIIGEGDKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGA-FMTAHLLAHAPH-LFCCGIARSGSYNKT 640 (752)
Q Consensus 565 ~~~g~g~~~~--~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG-~~a~~~~~~~p~-~~~~~v~~~~~~~~~ 640 (752)
+.+|++.+.- +.-+.....+|+..+++++++... +.++..+|+|+|| +++.+++.+.-+ .+.++++++...|..
T Consensus 111 ~~Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l~~~~~--~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~ 188 (345)
T COG0429 111 HFRGCSGEANTSPRLYHSGETEDIRFFLDWLKARFP--PRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLE 188 (345)
T ss_pred ecccccCCcccCcceecccchhHHHHHHHHHHHhCC--CCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHH
Confidence 5556654422 222334556999999999998654 5789999999999 555555544311 345555555433310
Q ss_pred CC------ccC--------------------------cccc-------ccchh--------------hhHHHHHhcChhh
Q 004456 641 LT------PFG--------------------------FQTE-------FRTLW--------------EATNVYIEMSPIT 667 (752)
Q Consensus 641 ~~------~~~--------------------------~~~~-------~~~~~--------------~~~~~~~~~~~~~ 667 (752)
.. .+. .+.. ..+.| +..+.|...|.+.
T Consensus 189 ~~~~~l~~~~s~~ly~r~l~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf~da~dYYr~aSs~~ 268 (345)
T COG0429 189 ACAYRLDSGFSLRLYSRYLLRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGFADAEDYYRQASSLP 268 (345)
T ss_pred HHHHHhcCchhhhhhHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCCCcHHHHHHhccccc
Confidence 00 000 0000 01111 2235567778889
Q ss_pred hcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCcc--ccHH--HHHHHHHHHHHHHhc
Q 004456 668 HANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAR--ENVM--HVIWETDRWLQKYCL 742 (752)
Q Consensus 668 ~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~--~~~~--~~~~~~~~fl~~~l~ 742 (752)
.+.+|.+|+||||..+|++++ .+........ ....+.+.+-+.+||..... .... =..+.+.+||+..+.
T Consensus 269 ~L~~Ir~PtLii~A~DDP~~~--~~~iP~~~~~---~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~~~ 342 (345)
T COG0429 269 LLPKIRKPTLIINAKDDPFMP--PEVIPKLQEM---LNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPFLE 342 (345)
T ss_pred cccccccceEEEecCCCCCCC--hhhCCcchhc---CCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHHHh
Confidence 999999999999999999998 4332222111 45678999999999974322 1112 233568999988764
No 107
>PRK11071 esterase YqiA; Provisional
Probab=99.48 E-value=2.5e-12 Score=120.75 Aligned_cols=178 Identities=12% Similarity=0.062 Sum_probs=105.5
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHh--CCcEEEecCCCCCCCCCCCCCCchhHHHHHHHHHHHH
Q 004456 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA--RRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAV 590 (752)
Q Consensus 513 ~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~~ 590 (752)
.|.||++||.+. ++..+.. ......+.+ .+|.|++ .+.+|++ . +..+.+
T Consensus 1 ~p~illlHGf~s-----------s~~~~~~--~~~~~~l~~~~~~~~v~~---~dl~g~~---------~----~~~~~l 51 (190)
T PRK11071 1 MSTLLYLHGFNS-----------SPRSAKA--TLLKNWLAQHHPDIEMIV---PQLPPYP---------A----DAAELL 51 (190)
T ss_pred CCeEEEECCCCC-----------CcchHHH--HHHHHHHHHhCCCCeEEe---CCCCCCH---------H----HHHHHH
Confidence 378999999531 1111110 012234444 3799998 4444542 1 233334
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC-C-c-cCc----cccccchh--hhHHHHH
Q 004456 591 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL-T-P-FGF----QTEFRTLW--EATNVYI 661 (752)
Q Consensus 591 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~-~-~-~~~----~~~~~~~~--~~~~~~~ 661 (752)
+.+.++. +.+++.++|+||||++++.++.++|. + +|+++|..+... . . .+. .......+ ...+...
T Consensus 52 ~~l~~~~--~~~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 126 (190)
T PRK11071 52 ESLVLEH--GGDPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRPFELLTDYLGENENPYTGQQYVLESRHIYDLK 126 (190)
T ss_pred HHHHHHc--CCCCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCHHHHHHHhcCCcccccCCCcEEEcHHHHHHHH
Confidence 4444332 23689999999999999999999973 3 466777655200 0 0 000 00000011 1111122
Q ss_pred hcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHH
Q 004456 662 EMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 738 (752)
Q Consensus 662 ~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 738 (752)
...+. .+. ..+|++++||++|.+|| +.++.++++.. +.++++|++|.+.. .+++.+.+.+|+.
T Consensus 127 ~~~~~-~i~-~~~~v~iihg~~De~V~--~~~a~~~~~~~-------~~~~~~ggdH~f~~---~~~~~~~i~~fl~ 189 (190)
T PRK11071 127 VMQID-PLE-SPDLIWLLQQTGDEVLD--YRQAVAYYAAC-------RQTVEEGGNHAFVG---FERYFNQIVDFLG 189 (190)
T ss_pred hcCCc-cCC-ChhhEEEEEeCCCCcCC--HHHHHHHHHhc-------ceEEECCCCcchhh---HHHhHHHHHHHhc
Confidence 22221 122 56889999999999999 99999888842 46678999999754 4788889999874
No 108
>PLN02578 hydrolase
Probab=99.47 E-value=2.6e-12 Score=134.50 Aligned_cols=173 Identities=20% Similarity=0.204 Sum_probs=108.3
Q ss_pred HHHHHhCCcEEEecCCCCCCCCCCCCCCc--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 004456 548 SLIFLARRFAVLAGPSIPIIGEGDKLPND--RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 625 (752)
Q Consensus 548 ~~~l~~~G~~v~~~~~~~~~g~g~~~~~~--~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~ 625 (752)
...| +++|.|++ .+.+|+|.+.... .......+|+.+.++.+. .+++.++|||+||++++.++.++|+
T Consensus 106 ~~~l-~~~~~v~~---~D~~G~G~S~~~~~~~~~~~~a~~l~~~i~~~~------~~~~~lvG~S~Gg~ia~~~A~~~p~ 175 (354)
T PLN02578 106 IPEL-AKKYKVYA---LDLLGFGWSDKALIEYDAMVWRDQVADFVKEVV------KEPAVLVGNSLGGFTALSTAVGYPE 175 (354)
T ss_pred HHHH-hcCCEEEE---ECCCCCCCCCCcccccCHHHHHHHHHHHHHHhc------cCCeEEEEECHHHHHHHHHHHhChH
Confidence 3344 46799999 5556777664332 122333445555444442 3679999999999999999999999
Q ss_pred ceeEEEEccCCCCCCCCc------------c-C--cccc----------------ccc----------hhhh--------
Q 004456 626 LFCCGIARSGSYNKTLTP------------F-G--FQTE----------------FRT----------LWEA-------- 656 (752)
Q Consensus 626 ~~~~~v~~~~~~~~~~~~------------~-~--~~~~----------------~~~----------~~~~-------- 656 (752)
+++++|++++........ . . .... ... .+..
T Consensus 176 ~v~~lvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (354)
T PLN02578 176 LVAGVALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLKEWFQRVVLGFLFWQAKQPSRIESVLKSVYKDKSNVDDYL 255 (354)
T ss_pred hcceEEEECCCccccccccccccccccccchhhHHHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCcccCCHHH
Confidence 999999887542110000 0 0 0000 000 0000
Q ss_pred -------------HHHHH-----------hcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEE
Q 004456 657 -------------TNVYI-----------EMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVL 712 (752)
Q Consensus 657 -------------~~~~~-----------~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~ 712 (752)
...+. .......++++++|+|+++|++|.++| ...++++.+.+. +.++++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~v~--~~~~~~l~~~~p----~a~l~~ 329 (354)
T PLN02578 256 VESITEPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDPWVG--PAKAEKIKAFYP----DTTLVN 329 (354)
T ss_pred HHHHHhcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCCCCC--HHHHHHHHHhCC----CCEEEE
Confidence 00000 001122346788999999999999998 888777766543 347777
Q ss_pred eCCCCccCCccccHHHHHHHHHHHHH
Q 004456 713 LPFEHHVYAARENVMHVIWETDRWLQ 738 (752)
Q Consensus 713 ~~~~~H~~~~~~~~~~~~~~~~~fl~ 738 (752)
+ ++||... .+.++++.+.+.+||+
T Consensus 330 i-~~GH~~~-~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 330 L-QAGHCPH-DEVPEQVNKALLEWLS 353 (354)
T ss_pred e-CCCCCcc-ccCHHHHHHHHHHHHh
Confidence 7 5899876 6778899999999985
No 109
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=99.47 E-value=3.2e-13 Score=128.92 Aligned_cols=158 Identities=23% Similarity=0.151 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC-----------c-cCccccc-
Q 004456 584 SSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT-----------P-FGFQTEF- 650 (752)
Q Consensus 584 ~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~-----------~-~~~~~~~- 650 (752)
+-+.+|++||++++.++.++|+|+|.|.||-+|+.+++..| .++++|+++|..-.... + .......
T Consensus 4 Eyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~~ 82 (213)
T PF08840_consen 4 EYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISKF 82 (213)
T ss_dssp HHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG-
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhhc
Confidence 56789999999999999999999999999999999999997 79999999875321000 0 0000000
Q ss_pred -------cchhhhHHHH-H--hcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCc--EEEEEeCCCCc
Q 004456 651 -------RTLWEATNVY-I--EMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGAL--SRLVLLPFEHH 718 (752)
Q Consensus 651 -------~~~~~~~~~~-~--~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~H 718 (752)
...+...... . .....-.++++++|+|+++|++|...| ....++.+.++|++.+.+ ++++.||++||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~i~~piLli~g~dD~~Wp-S~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH 161 (213)
T PF08840_consen 83 SWNEPGLLRSRYAFELADDKAVEEARIPVEKIKGPILLISGEDDQIWP-SSEMAEQIEERLKAAGFPHNVEHLSYPGAGH 161 (213)
T ss_dssp EE-TTS-EE-TT-B--TTTGGGCCCB--GGG--SEEEEEEETT-SSS--HHHHHHHHHHHHHCTT-----EEEEETTB-S
T ss_pred eecCCcceehhhhhhcccccccccccccHHHcCCCEEEEEeCCCCccc-hHHHHHHHHHHHHHhCCCCcceEEEcCCCCc
Confidence 0000000000 0 001111356788999999999999988 235566777788888765 88999999999
Q ss_pred cCCcc---------------------------ccHHHHHHHHHHHHHHHhcC
Q 004456 719 VYAAR---------------------------ENVMHVIWETDRWLQKYCLS 743 (752)
Q Consensus 719 ~~~~~---------------------------~~~~~~~~~~~~fl~~~l~~ 743 (752)
.+... ...++..+.+++||+++|+.
T Consensus 162 ~i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~~ 213 (213)
T PF08840_consen 162 LIEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLGQ 213 (213)
T ss_dssp ---STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH---
T ss_pred eecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 75421 01245678899999999963
No 110
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.47 E-value=2.1e-12 Score=137.27 Aligned_cols=192 Identities=17% Similarity=0.117 Sum_probs=115.4
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCC--CchhHHHHHHHHHHHH
Q 004456 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP--NDRFVEQLVSSAEAAV 590 (752)
Q Consensus 513 ~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~--~~~~~~~~~~d~~~~~ 590 (752)
.|.||++||.+... ..| ...... +.++|.|++ ++.+|+|.+.. ..........++.+.+
T Consensus 131 ~~~vl~~HG~~~~~-----------~~~----~~~~~~-l~~~~~v~~---~d~~g~G~s~~~~~~~~~~~~~~~~~~~~ 191 (371)
T PRK14875 131 GTPVVLIHGFGGDL-----------NNW----LFNHAA-LAAGRPVIA---LDLPGHGASSKAVGAGSLDELAAAVLAFL 191 (371)
T ss_pred CCeEEEECCCCCcc-----------chH----HHHHHH-HhcCCEEEE---EcCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 58899999953110 111 122333 345699999 55667776532 2222333344333333
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCc------ccc---------------
Q 004456 591 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGF------QTE--------------- 649 (752)
Q Consensus 591 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~------~~~--------------- 649 (752)
+. ++..++.++|||+||++++.++.++|++++++|+++|..........+ ...
T Consensus 192 ----~~--~~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (371)
T PRK14875 192 ----DA--LGIERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAGLGPEINGDYIDGFVAAESRRELKPVLELLFADP 265 (371)
T ss_pred ----Hh--cCCccEEEEeechHHHHHHHHHHhCchheeEEEEECcCCcCcccchhHHHHhhcccchhHHHHHHHHHhcCh
Confidence 22 345689999999999999999999999999999988753211000000 000
Q ss_pred ccchhhh-------------H---HHHHh---------cChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhC
Q 004456 650 FRTLWEA-------------T---NVYIE---------MSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGH 704 (752)
Q Consensus 650 ~~~~~~~-------------~---~~~~~---------~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~ 704 (752)
....+.. . ..+.. .+....+.++++|+|+++|++|..+| +.+++.+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~vp--~~~~~~l~------ 337 (371)
T PRK14875 266 ALVTRQMVEDLLKYKRLDGVDDALRALADALFAGGRQRVDLRDRLASLAIPVLVIWGEQDRIIP--AAHAQGLP------ 337 (371)
T ss_pred hhCCHHHHHHHHHHhccccHHHHHHHHHHHhccCcccchhHHHHHhcCCCCEEEEEECCCCccC--HHHHhhcc------
Confidence 0000000 0 00000 11122455788999999999999998 76654332
Q ss_pred CCcEEEEEeCCCCccCCccccHHHHHHHHHHHHHH
Q 004456 705 GALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 739 (752)
Q Consensus 705 ~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 739 (752)
..+++.+++++||... .+.++.+.+.+.+||.+
T Consensus 338 -~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 338 -DGVAVHVLPGAGHMPQ-MEAAADVNRLLAEFLGK 370 (371)
T ss_pred -CCCeEEEeCCCCCChh-hhCHHHHHHHHHHHhcc
Confidence 2468899999999765 56677777788888864
No 111
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.47 E-value=4.1e-11 Score=121.65 Aligned_cols=266 Identities=15% Similarity=0.138 Sum_probs=165.0
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (752)
.+..+.|+|+|+.|++.. ..+.|++++..+++.......... .+..+.|+|+++.|++.+.
T Consensus 11 ~i~~~~~~~~~~~l~~~~----------~~g~i~i~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~----- 71 (289)
T cd00200 11 GVTCVAFSPDGKLLATGS----------GDGTIKVWDLETGELLRTLKGHTG----PVRDVAASADGTYLASGSS----- 71 (289)
T ss_pred CEEEEEEcCCCCEEEEee----------cCcEEEEEEeeCCCcEEEEecCCc----ceeEEEECCCCCEEEEEcC-----
Confidence 488899999999999863 246888888887754332222211 2457899999988887632
Q ss_pred CCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CC-CccccCCc-cceeccccCCCCce
Q 004456 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKY 188 (752)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G-~~~~l~~~-~~~~~~~~SpDGk~ 188 (752)
.+.|+++++ ++ ....+..+ ..+..+.|+|+++.
T Consensus 72 --------------------------------------------~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (289)
T cd00200 72 --------------------------------------------DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI 107 (289)
T ss_pred --------------------------------------------CCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCE
Confidence 157888888 43 44444444 57889999999877
Q ss_pred EEEEecccCccccccccCccccEEEEecCCceeEE-ecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCC
Q 004456 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (752)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~ 267 (752)
|+....+ +.+.+|++...+... +.... ..+..+.|+|+++. ++...
T Consensus 108 ~~~~~~~-------------~~i~~~~~~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~-l~~~~------ 154 (289)
T cd00200 108 LSSSSRD-------------KTIKVWDVETGKCLTTLRGHT-------------DWVNSVAFSPDGTF-VASSS------ 154 (289)
T ss_pred EEEecCC-------------CeEEEEECCCcEEEEEeccCC-------------CcEEEEEEcCcCCE-EEEEc------
Confidence 7665423 379999998554333 32111 22668999999774 44332
Q ss_pred CccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccc
Q 004456 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE 347 (752)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 347 (752)
..+.+.++++. .+.....+......+..+.|+|+++.+++... ...|.++++..+ ...........
T Consensus 155 ------~~~~i~i~d~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~--~~~~~~~~~~~ 220 (289)
T cd00200 155 ------QDGTIKLWDLR--TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTG--KCLGTLRGHEN 220 (289)
T ss_pred ------CCCcEEEEEcc--ccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCC--ceecchhhcCC
Confidence 23478888883 22333444444557888999999998888763 345888888763 22222211111
Q ss_pred cccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeeccchhhhhceeeeec
Q 004456 348 NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVF 427 (752)
Q Consensus 348 ~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 427 (752)
....+.|++++..++....+ ..|++||+.+++.......... .+.
T Consensus 221 ------~i~~~~~~~~~~~~~~~~~~---------------------~~i~i~~~~~~~~~~~~~~~~~----~i~---- 265 (289)
T cd00200 221 ------GVNSVAFSPDGYLLASGSED---------------------GTIRVWDLRTGECVQTLSGHTN----SVT---- 265 (289)
T ss_pred ------ceEEEEEcCCCcEEEEEcCC---------------------CcEEEEEcCCceeEEEccccCC----cEE----
Confidence 11126689997666554311 1588999887665444332211 122
Q ss_pred CCcceecccCCCEEEEEE
Q 004456 428 GQGEEDINLNQLKILTSK 445 (752)
Q Consensus 428 ~~~~~~~s~d~~~l~~~~ 445 (752)
.+.|+++++.++...
T Consensus 266 ---~~~~~~~~~~l~~~~ 280 (289)
T cd00200 266 ---SLAWSPDGKRLASGS 280 (289)
T ss_pred ---EEEECCCCCEEEEec
Confidence 347888887765543
No 112
>PRK07581 hypothetical protein; Validated
Probab=99.46 E-value=2.5e-12 Score=134.27 Aligned_cols=181 Identities=15% Similarity=0.127 Sum_probs=113.3
Q ss_pred HHHhCCcEEEecCCCCCCCCCCCCCCch----h-HH-----HHHHHHHHHHHHHHHcCCCCCCc-EEEEEeChHHHHHHH
Q 004456 550 IFLARRFAVLAGPSIPIIGEGDKLPNDR----F-VE-----QLVSSAEAAVEEVVRRGVADPSR-IAVGGHSYGAFMTAH 618 (752)
Q Consensus 550 ~l~~~G~~v~~~~~~~~~g~g~~~~~~~----~-~~-----~~~~d~~~~~~~l~~~~~~d~~~-i~l~G~S~GG~~a~~ 618 (752)
.|...+|.|++ .+.+|+|.+..+.. + .. ...+|+.+.+..+.+.-. .++ ..|+||||||++|+.
T Consensus 66 ~l~~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lg--i~~~~~lvG~S~GG~va~~ 140 (339)
T PRK07581 66 ALDPEKYFIII---PNMFGNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLTEKFG--IERLALVVGWSMGAQQTYH 140 (339)
T ss_pred ccCcCceEEEE---ecCCCCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHHHHhC--CCceEEEEEeCHHHHHHHH
Confidence 34467899999 56678877643321 0 01 133455444444544322 367 479999999999999
Q ss_pred HHHhCCCceeEEEEccCCCCCCC----------------Ccc--Cccc---------------------c--ccch----
Q 004456 619 LLAHAPHLFCCGIARSGSYNKTL----------------TPF--GFQT---------------------E--FRTL---- 653 (752)
Q Consensus 619 ~~~~~p~~~~~~v~~~~~~~~~~----------------~~~--~~~~---------------------~--~~~~---- 653 (752)
++.++|++++++|++++...... ..+ ++.. . ....
T Consensus 141 ~a~~~P~~V~~Lvli~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (339)
T PRK07581 141 WAVRYPDMVERAAPIAGTAKTTPHNFVFLEGLKAALTADPAFNGGWYAEPPERGLRAHARVYAGWGFSQAFYRQELWRAM 220 (339)
T ss_pred HHHHCHHHHhhheeeecCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHHhHHHHHHhhhcccc
Confidence 99999999999998865432000 000 0000 0 0000
Q ss_pred -hhh-HH----HH-------------------Hhc----------ChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHH
Q 004456 654 -WEA-TN----VY-------------------IEM----------SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFF 698 (752)
Q Consensus 654 -~~~-~~----~~-------------------~~~----------~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~ 698 (752)
+.. .. .+ ... +....+.++++|+|+++|++|..+| +..++.+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~L~~I~~PtLvI~G~~D~~~p--~~~~~~l~ 298 (339)
T PRK07581 221 GYASLEDFLVGFWEGNFLPRDPNNLLAMLWTWQRGDISRNPAYGGDLAAALGSITAKTFVMPISTDLYFP--PEDCEAEA 298 (339)
T ss_pred ChhhHHHHHHHHHHHhhcccCcccHHHHHHHhhhcccccCcccCCCHHHHHhcCCCCEEEEEeCCCCCCC--HHHHHHHH
Confidence 000 00 00 000 1112345688999999999999998 88877776
Q ss_pred HHHHhCCCcEEEEEeCC-CCccCCccccHHHHHHHHHHHHHHHhc
Q 004456 699 DALKGHGALSRLVLLPF-EHHVYAARENVMHVIWETDRWLQKYCL 742 (752)
Q Consensus 699 ~~l~~~~~~~~~~~~~~-~~H~~~~~~~~~~~~~~~~~fl~~~l~ 742 (752)
+.+.. .+++++++ +||... .+...++...+.+||.+.|.
T Consensus 299 ~~ip~----a~l~~i~~~~GH~~~-~~~~~~~~~~~~~~~~~~~~ 338 (339)
T PRK07581 299 ALIPN----AELRPIESIWGHLAG-FGQNPADIAFIDAALKELLA 338 (339)
T ss_pred HhCCC----CeEEEeCCCCCcccc-ccCcHHHHHHHHHHHHHHHh
Confidence 65533 48899998 899765 56677888999999999873
No 113
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.45 E-value=1.8e-11 Score=119.96 Aligned_cols=205 Identities=14% Similarity=0.075 Sum_probs=128.2
Q ss_pred EEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCC
Q 004456 485 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI 564 (752)
Q Consensus 485 ~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 564 (752)
+.+++..| .+.++++.|.. ..+.|+||++||.+... +.+.......+..|+++||.|++ +
T Consensus 3 ~~l~~~~g-~~~~~~~~p~~-----~~~~~~VlllHG~g~~~-----------~~~~~~~~~la~~La~~Gy~Vl~---~ 62 (266)
T TIGR03101 3 FFLDAPHG-FRFCLYHPPVA-----VGPRGVVIYLPPFAEEM-----------NKSRRMVALQARAFAAGGFGVLQ---I 62 (266)
T ss_pred EEecCCCC-cEEEEEecCCC-----CCCceEEEEECCCcccc-----------cchhHHHHHHHHHHHHCCCEEEE---E
Confidence 45555555 57788887765 23469999999953210 11111112346788899999999 5
Q ss_pred CCCCCCCCCCC--chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC
Q 004456 565 PIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT 642 (752)
Q Consensus 565 ~~~g~g~~~~~--~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~ 642 (752)
+.+|+|.+... ........+|+.++++++.+.+ ..+|+|+||||||.+++.++.++|+.++++|+.+|+.+-...
T Consensus 63 Dl~G~G~S~g~~~~~~~~~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~ 139 (266)
T TIGR03101 63 DLYGCGDSAGDFAAARWDVWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQ 139 (266)
T ss_pred CCCCCCCCCCccccCCHHHHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHH
Confidence 55677766332 2234567899999999998764 368999999999999999999999999999999987551100
Q ss_pred c-----cCc---cccccchh------------------------hhHHHHHhcChhhhcCCCCCCEEEEEeCC--CCCCC
Q 004456 643 P-----FGF---QTEFRTLW------------------------EATNVYIEMSPITHANKIKKPILIIHGEV--DDKVG 688 (752)
Q Consensus 643 ~-----~~~---~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~P~li~~G~~--D~~v~ 688 (752)
. +.. ........ .....+...+....... ..++|++.-.. |...
T Consensus 140 l~~~lrl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~~~- 217 (266)
T TIGR03101 140 LQQFLRLRLVARRLGGESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVPK-NCPVHWFEVRPEEGATL- 217 (266)
T ss_pred HHHHHHHHHHHHhccccccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCCC-CCceEEEEeccccCCCC-
Confidence 0 000 00000000 00011111111111111 45677776643 2222
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEeCCC
Q 004456 689 LFPMQAERFFDALKGHGALSRLVLLPFE 716 (752)
Q Consensus 689 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 716 (752)
.....++.+++++.|..++...|++-
T Consensus 218 --~~~~~~l~~~~~~~g~~v~~~~~~~~ 243 (266)
T TIGR03101 218 --SPVFSRLGEQWVQSGVEVTVDLVPGP 243 (266)
T ss_pred --CHHHHHHHHHHHHcCCeEeeeecCCc
Confidence 45677899999999999999999986
No 114
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.45 E-value=2.4e-13 Score=133.24 Aligned_cols=182 Identities=23% Similarity=0.263 Sum_probs=112.6
Q ss_pred EEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCCc----hhHHHHHHHHHHHHH
Q 004456 516 LFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND----RFVEQLVSSAEAAVE 591 (752)
Q Consensus 516 vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~----~~~~~~~~d~~~~~~ 591 (752)
||++||.+.. ...+..++..| ++||.|++ .+.+|+|.+.... .......+|+.++++
T Consensus 1 vv~~hG~~~~---------------~~~~~~~~~~l-~~~~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~ 61 (228)
T PF12697_consen 1 VVFLHGFGGS---------------SESWDPLAEAL-ARGYRVIA---FDLPGHGRSDPPPDYSPYSIEDYAEDLAELLD 61 (228)
T ss_dssp EEEE-STTTT---------------GGGGHHHHHHH-HTTSEEEE---EECTTSTTSSSHSSGSGGSHHHHHHHHHHHHH
T ss_pred eEEECCCCCC---------------HHHHHHHHHHH-hCCCEEEE---EecCCccccccccccCCcchhhhhhhhhhccc
Confidence 7899996421 11122355566 58999999 5566777765432 233444555555444
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc--c----Cccc--------------ccc
Q 004456 592 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP--F----GFQT--------------EFR 651 (752)
Q Consensus 592 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~--~----~~~~--------------~~~ 651 (752)
.+ . .+++.++|||+||.+++.++.++|++++++|+++|........ . .+.. ...
T Consensus 62 ~~---~---~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (228)
T PF12697_consen 62 AL---G---IKKVILVGHSMGGMIALRLAARYPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFF 135 (228)
T ss_dssp HT---T---TSSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc---c---cccccccccccccccccccccccccccccceeecccccccccccccccchhhhhhhhcccccccccccccc
Confidence 43 2 2689999999999999999999999999999999876421100 0 0000 000
Q ss_pred chhhhH-----------HH--------HHhcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEE
Q 004456 652 TLWEAT-----------NV--------YIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVL 712 (752)
Q Consensus 652 ~~~~~~-----------~~--------~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~ 712 (752)
..+... .. ....+....++++++|+++++|++|..++ ....+.+.+.+ .++++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~D~~~~--~~~~~~~~~~~----~~~~~~~ 209 (228)
T PF12697_consen 136 YRWFDGDEPEDLIRSSRRALAEYLRSNLWQADLSEALPRIKVPVLVIHGEDDPIVP--PESAEELADKL----PNAELVV 209 (228)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGSSSEEEEEEETTSSSSH--HHHHHHHHHHS----TTEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccCCCeEEeecCCCCCCC--HHHHHHHHHHC----CCCEEEE
Confidence 000000 00 01122234566789999999999999987 66665555443 4579999
Q ss_pred eCCCCccCCccccHHHH
Q 004456 713 LPFEHHVYAARENVMHV 729 (752)
Q Consensus 713 ~~~~~H~~~~~~~~~~~ 729 (752)
++++||... .++++++
T Consensus 210 ~~~~gH~~~-~~~p~~~ 225 (228)
T PF12697_consen 210 IPGAGHFLF-LEQPDEV 225 (228)
T ss_dssp ETTSSSTHH-HHSHHHH
T ss_pred ECCCCCccH-HHCHHHH
Confidence 999999855 3344433
No 115
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.44 E-value=9.7e-12 Score=131.16 Aligned_cols=71 Identities=17% Similarity=0.062 Sum_probs=60.4
Q ss_pred hcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeC-CCCccCCccccHHHHHHHHHHHHHHHh
Q 004456 668 HANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLP-FEHHVYAARENVMHVIWETDRWLQKYC 741 (752)
Q Consensus 668 ~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~H~~~~~~~~~~~~~~~~~fl~~~l 741 (752)
.+.++++|+|+++|+.|..+| +..++++.+.+...+..+++++++ ++||... .+.++++.+.+.+||.+.-
T Consensus 304 ~l~~I~~PtLvI~G~~D~~~p--~~~~~~la~~i~~a~~~~~l~~i~~~~GH~~~-le~p~~~~~~L~~FL~~~~ 375 (379)
T PRK00175 304 ALARIKARFLVVSFTSDWLFP--PARSREIVDALLAAGADVSYAEIDSPYGHDAF-LLDDPRYGRLVRAFLERAA 375 (379)
T ss_pred HHhcCCCCEEEEEECCccccC--HHHHHHHHHHHHhcCCCeEEEEeCCCCCchhH-hcCHHHHHHHHHHHHHhhh
Confidence 346789999999999999998 999999999998877777888775 8999866 5667788999999998854
No 116
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.43 E-value=9e-11 Score=122.15 Aligned_cols=266 Identities=14% Similarity=0.086 Sum_probs=143.4
Q ss_pred CcceeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcc-cCcceeccCCC
Q 004456 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-TGEAKPLFESP 81 (752)
Q Consensus 3 ~~~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~-~g~~~~lt~~~ 81 (752)
+.++|.++++.. .|+.+.+..++.+.......+||||++|+.... ....|.+++++ .|..+.+...+
T Consensus 10 ~~~~I~~~~~~~---~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~---------~~~~i~~~~~~~~g~l~~~~~~~ 77 (330)
T PRK11028 10 ESQQIHVWNLNH---EGALTLLQVVDVPGQVQPMVISPDKRHLYVGVR---------PEFRVLSYRIADDGALTFAAESP 77 (330)
T ss_pred CCCCEEEEEECC---CCceeeeeEEecCCCCccEEECCCCCEEEEEEC---------CCCcEEEEEECCCCceEEeeeec
Confidence 356788888853 255555544444445777899999998866432 23566666665 34433332111
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEE
Q 004456 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (752)
Q Consensus 82 ~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~ 161 (752)
. ......+.++|||+.|+.+... .+.|.+
T Consensus 78 ~---~~~p~~i~~~~~g~~l~v~~~~------------------------------------------------~~~v~v 106 (330)
T PRK11028 78 L---PGSPTHISTDHQGRFLFSASYN------------------------------------------------ANCVSV 106 (330)
T ss_pred C---CCCceEEEECCCCCEEEEEEcC------------------------------------------------CCeEEE
Confidence 1 1124577999999988876321 145556
Q ss_pred Ecc--CCCcc-cc--CCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCc-eeEEecCCCCCCCCC
Q 004456 162 GSL--DGTAK-DF--GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIP 234 (752)
Q Consensus 162 ~~~--~G~~~-~l--~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~ 234 (752)
+++ +|... .+ ... .....+.++|||++|++..... ..|.+|+++.. ........... .+
T Consensus 107 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~------------~~v~v~d~~~~g~l~~~~~~~~~--~~ 172 (330)
T PRK11028 107 SPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKE------------DRIRLFTLSDDGHLVAQEPAEVT--TV 172 (330)
T ss_pred EEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCC------------CEEEEEEECCCCcccccCCCcee--cC
Confidence 655 44221 11 112 3456678999999998876553 47999998752 21110000000 00
Q ss_pred cccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecc---------cceeeee
Q 004456 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD---------LRFRSVS 305 (752)
Q Consensus 235 ~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~---------~~~~~~~ 305 (752)
...+++.+.|+|||++ +|.+.. ..+.|.++++++ .++..+.+.... .....+.
T Consensus 173 -----~g~~p~~~~~~pdg~~-lyv~~~-----------~~~~v~v~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~i~ 234 (330)
T PRK11028 173 -----EGAGPRHMVFHPNQQY-AYCVNE-----------LNSSVDVWQLKD-PHGEIECVQTLDMMPADFSDTRWAADIH 234 (330)
T ss_pred -----CCCCCceEEECCCCCE-EEEEec-----------CCCEEEEEEEeC-CCCCEEEEEEEecCCCcCCCCccceeEE
Confidence 0123678999999997 666642 234677777631 122322221110 0112467
Q ss_pred eecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEee
Q 004456 306 WCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (752)
Q Consensus 306 ~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~ 371 (752)
++|||++++.+. ...+...+|.++.++ ...+.+....... ..-.+.++|||++|+.+.
T Consensus 235 ~~pdg~~lyv~~-~~~~~I~v~~i~~~~--~~~~~~~~~~~~~-----~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 235 ITPDGRHLYACD-RTASLISVFSVSEDG--SVLSFEGHQPTET-----QPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred ECCCCCEEEEec-CCCCeEEEEEEeCCC--CeEEEeEEEeccc-----cCCceEECCCCCEEEEEE
Confidence 899999777753 333333344443333 1111111111110 111267899999998886
No 117
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.43 E-value=5.5e-12 Score=127.93 Aligned_cols=196 Identities=15% Similarity=0.128 Sum_probs=113.9
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 004456 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEE 592 (752)
Q Consensus 513 ~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~ 592 (752)
.|.||++||.+. ....+......| ..+|.|++ .+.+|+|.+..+... ....++..+.+..
T Consensus 34 ~~~iv~lHG~~~---------------~~~~~~~~~~~l-~~~~~vi~---~D~~G~G~S~~~~~~-~~~~~~~~~~~~~ 93 (286)
T PRK03204 34 GPPILLCHGNPT---------------WSFLYRDIIVAL-RDRFRCVA---PDYLGFGLSERPSGF-GYQIDEHARVIGE 93 (286)
T ss_pred CCEEEEECCCCc---------------cHHHHHHHHHHH-hCCcEEEE---ECCCCCCCCCCCCcc-ccCHHHHHHHHHH
Confidence 478999999531 111011223333 46799999 566677776443211 1123344444444
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC-------------ccC---c----ccc---
Q 004456 593 VVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT-------------PFG---F----QTE--- 649 (752)
Q Consensus 593 l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~-------------~~~---~----~~~--- 649 (752)
+.+.. +.+++.++||||||.+++.++..+|++++++|++++..-.... ... . ...
T Consensus 94 ~~~~~--~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (286)
T PRK03204 94 FVDHL--GLDRYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWFWPADTLAMKAFSRVMSSPPVQYAILRRNFFVERLI 171 (286)
T ss_pred HHHHh--CCCCEEEEEECccHHHHHHHHHhChhheeEEEEECccccCCCchhHHHHHHHhccccchhhhhhhhHHHHHhc
Confidence 44432 3468999999999999999999999999999987764310000 000 0 000
Q ss_pred ---ccchh--hhHHHHHh-----------------c---Ch-hhhc----CC--CCCCEEEEEeCCCCCCCCCHH-HHHH
Q 004456 650 ---FRTLW--EATNVYIE-----------------M---SP-ITHA----NK--IKKPILIIHGEVDDKVGLFPM-QAER 696 (752)
Q Consensus 650 ---~~~~~--~~~~~~~~-----------------~---~~-~~~~----~~--~~~P~li~~G~~D~~v~~~~~-~~~~ 696 (752)
..... .....+.. . .+ +..+ .+ .++|+|+++|++|..++ +. ..+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PtliI~G~~D~~~~--~~~~~~~ 249 (286)
T PRK03204 172 PAGTEHRPSSAVMAHYRAVQPNAAARRGVAEMPKQILAARPLLARLAREVPATLGTKPTLLVWGMKDVAFR--PKTILPR 249 (286)
T ss_pred cccccCCCCHHHHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHhhhhhhhhcCCCCeEEEecCCCcccC--cHHHHHH
Confidence 00000 00000000 0 00 0001 11 17999999999999876 44 3444
Q ss_pred HHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHH
Q 004456 697 FFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 737 (752)
Q Consensus 697 ~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 737 (752)
+.+.+. ..++++++++||... .+.++.+.+.+.+||
T Consensus 250 ~~~~ip----~~~~~~i~~aGH~~~-~e~Pe~~~~~i~~~~ 285 (286)
T PRK03204 250 LRATFP----DHVLVELPNAKHFIQ-EDAPDRIAAAIIERF 285 (286)
T ss_pred HHHhcC----CCeEEEcCCCccccc-ccCHHHHHHHHHHhc
Confidence 444443 358999999999876 677888888898887
No 118
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.42 E-value=1e-11 Score=130.00 Aligned_cols=68 Identities=19% Similarity=0.101 Sum_probs=53.9
Q ss_pred hcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEE-eCCCCccCCccccHHHHHHHHHHHHH
Q 004456 668 HANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVL-LPFEHHVYAARENVMHVIWETDRWLQ 738 (752)
Q Consensus 668 ~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~H~~~~~~~~~~~~~~~~~fl~ 738 (752)
.++++++|+|+++|+.|..+| +..++.+.+.+......++++. ++++||... .+.++.+.+.+.+||.
T Consensus 283 ~l~~I~~P~Lvi~G~~D~~~p--~~~~~~~a~~i~~~~~~v~~~~i~~~~GH~~~-le~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 283 ALSRIKAPFLVVSITSDWLFP--PAESRELAKALPAAGLRVTYVEIESPYGHDAF-LVETDQVEELIRGFLR 351 (351)
T ss_pred HHhhCCCCEEEEEeCCccccC--HHHHHHHHHHHhhcCCceEEEEeCCCCCcchh-hcCHHHHHHHHHHHhC
Confidence 456788999999999999998 9999999988877644444444 468999876 4667888888999873
No 119
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.42 E-value=7.6e-11 Score=117.68 Aligned_cols=305 Identities=17% Similarity=0.133 Sum_probs=155.2
Q ss_pred cceeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCc
Q 004456 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (752)
Q Consensus 4 ~~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~ 83 (752)
..++|+++|.. ++.+|||..+.. ......+||+.+.|.|+. ...+|+.+++++.+.+.|...+..
T Consensus 59 ~~nly~lDL~t----~~i~QLTdg~g~-~~~g~~~s~~~~~~~Yv~----------~~~~l~~vdL~T~e~~~vy~~p~~ 123 (386)
T PF14583_consen 59 NRNLYLLDLAT----GEITQLTDGPGD-NTFGGFLSPDDRALYYVK----------NGRSLRRVDLDTLEERVVYEVPDD 123 (386)
T ss_dssp S-EEEEEETTT-----EEEE---SS-B--TTT-EE-TTSSEEEEEE----------TTTEEEEEETTT--EEEEEE--TT
T ss_pred CcceEEEEccc----CEEEECccCCCC-CccceEEecCCCeEEEEE----------CCCeEEEEECCcCcEEEEEECCcc
Confidence 35789999999 999999965532 344688999999999974 236899999999999888776652
Q ss_pred cccccccceEEe--cCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEE
Q 004456 84 CLNAVFGSFVWV--NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (752)
Q Consensus 84 ~~~~~~~~~~ws--pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~ 161 (752)
-.....|+ .|+..++..... +.. +...-.+......+.......|+.
T Consensus 124 ----~~g~gt~v~n~d~t~~~g~e~~-~~d--------------------------~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 124 ----WKGYGTWVANSDCTKLVGIEIS-RED--------------------------WKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp ----EEEEEEEEE-TTSSEEEEEEEE-GGG-------------------------------SHHHHHHHHHC---EEEEE
T ss_pred ----cccccceeeCCCccEEEEEEEe-ehh--------------------------ccCccccHHHHHHHhhCCCceEEE
Confidence 12345775 456666544110 000 000000111112222224478999
Q ss_pred Ecc-CCCccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCC
Q 004456 162 GSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (752)
Q Consensus 162 ~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (752)
+++ +|+.+.+... ....-+.+||.--.++.-..+.+ .......||+.+.+++..+.+......
T Consensus 173 idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGp------w~~Vd~RiW~i~~dg~~~~~v~~~~~~--------- 237 (386)
T PF14583_consen 173 IDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGP------WDLVDQRIWTINTDGSNVKKVHRRMEG--------- 237 (386)
T ss_dssp EETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-------TTTSS-SEEEEETTS---EESS---TT---------
T ss_pred EECCCCceeEEEecCccccCcccCCCCCCEEEEeccCC------cceeceEEEEEEcCCCcceeeecCCCC---------
Confidence 999 7787777655 77778888887655555555544 333446899999999998888655322
Q ss_pred ccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeec
Q 004456 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWY 319 (752)
Q Consensus 240 ~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~ 319 (752)
.....=.|+|||+. |.|.....++.. .-|.-++. ++.+.+.+..... ...+.-|+||+.++--..+
T Consensus 238 --e~~gHEfw~~DG~~-i~y~~~~~~~~~-------~~i~~~d~---~t~~~~~~~~~p~-~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 238 --ESVGHEFWVPDGST-IWYDSYTPGGQD-------FWIAGYDP---DTGERRRLMEMPW-CSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp --EEEEEEEE-TTSS--EEEEEEETTT---------EEEEEE-T---TT--EEEEEEE-S-EEEEEE-TTSSEEEEEE--
T ss_pred --cccccccccCCCCE-EEEEeecCCCCc-------eEEEeeCC---CCCCceEEEeCCc-eeeeEEcCCCCEEEecCCC
Confidence 11234689999999 888765433211 14666676 4555555544433 3456668999876653311
Q ss_pred cc------------CceeEEEEcCCCCCccceecccccccccc----CCCCCCceeeCCCCCeEEEeeeecCCcceEEEE
Q 004456 320 KT------------SQTRTWLVCPGSKDVAPRVLFDRVFENVY----SDPGSPMMTRTSTGTNVIAKIKKENDEQIYILL 383 (752)
Q Consensus 320 ~~------------~~~~l~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~ 383 (752)
.+ ...-||++++..+ ....+..+...... .....|-.+|||||++|+|.+..
T Consensus 304 ~p~~v~~~~~~~~~~~p~i~~~~~~~~--~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~---------- 371 (386)
T PF14583_consen 304 APVDVADAGGYKIENDPWIYLFDVEAG--RFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDM---------- 371 (386)
T ss_dssp -----------------EEEEEETTTT--EEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-T----------
T ss_pred CCccccccccceecCCcEEEEeccccC--ceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCC----------
Confidence 11 1125777888763 33444433322211 11234556689999999999832
Q ss_pred ccCCCCCCCCCCeeEEEecC
Q 004456 384 NGRGFTPEGNIPFLDLFDIN 403 (752)
Q Consensus 384 ~~~g~~~~~~~~~l~~~d~~ 403 (752)
...+.||++++.
T Consensus 372 --------~G~~~vY~v~i~ 383 (386)
T PF14583_consen 372 --------EGPPAVYLVEIP 383 (386)
T ss_dssp --------TSS-EEEEEE--
T ss_pred --------CCCccEEEEeCc
Confidence 234578988874
No 120
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.41 E-value=3.6e-12 Score=133.03 Aligned_cols=175 Identities=18% Similarity=0.177 Sum_probs=110.2
Q ss_pred HHhCCcEEEecCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCc-EEEEEeChHHHHHHHHHHhCCCceeE
Q 004456 551 FLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSR-IAVGGHSYGAFMTAHLLAHAPHLFCC 629 (752)
Q Consensus 551 l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~-i~l~G~S~GG~~a~~~~~~~p~~~~~ 629 (752)
|...+|.|++ .+.+|+|.+...........+|+.+.++.+ + .++ +.|+||||||++++.++.++|+++++
T Consensus 95 L~~~~~~Vi~---~Dl~G~g~s~~~~~~~~~~a~dl~~ll~~l---~---l~~~~~lvG~SmGG~vA~~~A~~~P~~V~~ 165 (343)
T PRK08775 95 LDPARFRLLA---FDFIGADGSLDVPIDTADQADAIALLLDAL---G---IARLHAFVGYSYGALVGLQFASRHPARVRT 165 (343)
T ss_pred cCccccEEEE---EeCCCCCCCCCCCCCHHHHHHHHHHHHHHc---C---CCcceEEEEECHHHHHHHHHHHHChHhhhe
Confidence 4356899999 445566655332223344455555555443 2 234 57999999999999999999999999
Q ss_pred EEEccCCCCCCCCc--c----------C--------------------ccc--------cccch------hhhHH-----
Q 004456 630 GIARSGSYNKTLTP--F----------G--------------------FQT--------EFRTL------WEATN----- 658 (752)
Q Consensus 630 ~v~~~~~~~~~~~~--~----------~--------------------~~~--------~~~~~------~~~~~----- 658 (752)
+|++++........ + . +.. ..... .....
T Consensus 166 LvLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (343)
T PRK08775 166 LVVVSGAHRAHPYAAAWRALQRRAVALGQLQCAEKHGLALARQLAMLSYRTPEEFEERFDAPPEVINGRVRVAAEDYLDA 245 (343)
T ss_pred EEEECccccCCHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHHHhCCCccccCCCccchHHHHHHH
Confidence 99998753211000 0 0 000 00000 00000
Q ss_pred ---HH-HhcC---------h----hhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCC-CCccC
Q 004456 659 ---VY-IEMS---------P----ITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPF-EHHVY 720 (752)
Q Consensus 659 ---~~-~~~~---------~----~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~H~~ 720 (752)
.+ ...+ . ...+.++++|+|+++|+.|..+| +..++++.+.+. ...+++++++ +||..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~PtLvi~G~~D~~~p--~~~~~~~~~~i~---p~a~l~~i~~~aGH~~ 320 (343)
T PRK08775 246 AGAQYVARTPVNAYLRLSESIDLHRVDPEAIRVPTVVVAVEGDRLVP--LADLVELAEGLG---PRGSLRVLRSPYGHDA 320 (343)
T ss_pred HHHHHHHhcChhHHHHHHHHHhhcCCChhcCCCCeEEEEeCCCEeeC--HHHHHHHHHHcC---CCCeEEEEeCCccHHH
Confidence 00 0000 0 01245688999999999999998 888777766553 2358899985 99987
Q ss_pred CccccHHHHHHHHHHHHHHH
Q 004456 721 AARENVMHVIWETDRWLQKY 740 (752)
Q Consensus 721 ~~~~~~~~~~~~~~~fl~~~ 740 (752)
. .+.++.+...+.+||.+.
T Consensus 321 ~-lE~Pe~~~~~l~~FL~~~ 339 (343)
T PRK08775 321 F-LKETDRIDAILTTALRST 339 (343)
T ss_pred H-hcCHHHHHHHHHHHHHhc
Confidence 6 567889999999999764
No 121
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.41 E-value=1.2e-10 Score=107.68 Aligned_cols=277 Identities=10% Similarity=0.062 Sum_probs=179.2
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEccc-----Cc-ceeccCCCCccccccccceEEecCCcEEEEEe
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-----GE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~-----g~-~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~ 105 (752)
++...+..+.+..+.+...+ ...+.++++.. |. .++++.+.+ .+..+.-|+||++.+-.+
T Consensus 17 ~Vt~la~~~~~~~~l~sasr---------Dk~ii~W~L~~dd~~~G~~~r~~~GHsH-----~v~dv~~s~dg~~alS~s 82 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASR---------DKTIIVWKLTSDDIKYGVPVRRLTGHSH-----FVSDVVLSSDGNFALSAS 82 (315)
T ss_pred eEEEEEeecCCCceEEEccc---------ceEEEEEEeccCccccCceeeeeeccce-----EecceEEccCCceEEecc
Confidence 57778888888888886543 25566665543 33 455654444 577889999999766543
Q ss_pred cCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCc-cccCCc-cceecccc
Q 004456 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGTP-AVYTAVEP 182 (752)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~-~~l~~~-~~~~~~~~ 182 (752)
.+ ..+.++|+ .|+. +++..+ ..+.++++
T Consensus 83 wD-------------------------------------------------~~lrlWDl~~g~~t~~f~GH~~dVlsva~ 113 (315)
T KOG0279|consen 83 WD-------------------------------------------------GTLRLWDLATGESTRRFVGHTKDVLSVAF 113 (315)
T ss_pred cc-------------------------------------------------ceEEEEEecCCcEEEEEEecCCceEEEEe
Confidence 21 58999999 6654 455445 78899999
Q ss_pred CCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEe
Q 004456 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (752)
Q Consensus 183 SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~ 262 (752)
|||.++|+-.+.++ .|.+|+.-+.....+...... .=+.-+.|+|+... .++++.
T Consensus 114 s~dn~qivSGSrDk-------------Tiklwnt~g~ck~t~~~~~~~-----------~WVscvrfsP~~~~-p~Ivs~ 168 (315)
T KOG0279|consen 114 STDNRQIVSGSRDK-------------TIKLWNTLGVCKYTIHEDSHR-----------EWVSCVRFSPNESN-PIIVSA 168 (315)
T ss_pred cCCCceeecCCCcc-------------eeeeeeecccEEEEEecCCCc-----------CcEEEEEEcCCCCC-cEEEEc
Confidence 99999998877664 799999988877666655311 11446899999755 555532
Q ss_pred ccCCCCccccCccceEEeccCCCCCCCCCe-EEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceec
Q 004456 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL 341 (752)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l 341 (752)
.....+-+||+ .+-+.+ ......+.+...++||||...+++. ....++++|++.+ +.+
T Consensus 169 ----------s~DktvKvWnl---~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg----kdg~~~LwdL~~~----k~l 227 (315)
T KOG0279|consen 169 ----------SWDKTVKVWNL---RNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG----KDGEAMLWDLNEG----KNL 227 (315)
T ss_pred ----------cCCceEEEEcc---CCcchhhccccccccEEEEEECCCCCEEecCC----CCceEEEEEccCC----cee
Confidence 24557888998 333433 3456677788999999999877744 3346888888774 223
Q ss_pred cccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCcee-EEeeccchh--h
Q 004456 342 FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKE-RIWESNREK--Y 418 (752)
Q Consensus 342 ~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~--~ 418 (752)
....... -...++|||.--+|...... .|.+||++++... .|..+.... -
T Consensus 228 ysl~a~~-----~v~sl~fspnrywL~~at~~----------------------sIkIwdl~~~~~v~~l~~d~~g~s~~ 280 (315)
T KOG0279|consen 228 YSLEAFD-----IVNSLCFSPNRYWLCAATAT----------------------SIKIWDLESKAVVEELKLDGIGPSSK 280 (315)
T ss_pred EeccCCC-----eEeeEEecCCceeEeeccCC----------------------ceEEEeccchhhhhhccccccccccc
Confidence 3222211 22347899997666655422 3889999887642 221111100 0
Q ss_pred hhceeeeecCCcceecccCCCEEEEEEecCC
Q 004456 419 FETAVALVFGQGEEDINLNQLKILTSKESKT 449 (752)
Q Consensus 419 ~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~ 449 (752)
...+..+ .++||+||..|+..+.+..
T Consensus 281 ~~~~~cl-----slaws~dG~tLf~g~td~~ 306 (315)
T KOG0279|consen 281 AGDPICL-----SLAWSADGQTLFAGYTDNV 306 (315)
T ss_pred cCCcEEE-----EEEEcCCCcEEEeeecCCc
Confidence 0012222 3699999999988775543
No 122
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.41 E-value=3.1e-11 Score=125.60 Aligned_cols=193 Identities=15% Similarity=0.139 Sum_probs=121.2
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCCc------hhHHHHHHHH
Q 004456 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND------RFVEQLVSSA 586 (752)
Q Consensus 513 ~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~------~~~~~~~~d~ 586 (752)
.|.||++||.+... ..| ...+..| +.+|.|++ .+.+|+|.+..+. .......+++
T Consensus 127 ~~~ivllHG~~~~~-----------~~w----~~~~~~L-~~~~~Via---~DlpG~G~S~~p~~~~~~~ys~~~~a~~l 187 (383)
T PLN03084 127 NPPVLLIHGFPSQA-----------YSY----RKVLPVL-SKNYHAIA---FDWLGFGFSDKPQPGYGFNYTLDEYVSSL 187 (383)
T ss_pred CCeEEEECCCCCCH-----------HHH----HHHHHHH-hcCCEEEE---ECCCCCCCCCCCcccccccCCHHHHHHHH
Confidence 47899999964211 111 1234444 45899999 6667777764432 2344556666
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC--CccC------------ccc--c-
Q 004456 587 EAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL--TPFG------------FQT--E- 649 (752)
Q Consensus 587 ~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~--~~~~------------~~~--~- 649 (752)
.+.++.+. .+++.|+|||+||.+++.++.++|++++++|++++...... .+.. +.. .
T Consensus 188 ~~~i~~l~------~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~~p~~l~~~~~~l~~~~~~~~~~~ 261 (383)
T PLN03084 188 ESLIDELK------SDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAKLPSTLSEFSNFLLGEIFSQDPLR 261 (383)
T ss_pred HHHHHHhC------CCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCccccccchHHHHHHHHHHhhhhhhcchHH
Confidence 66555542 35799999999999999999999999999999997642110 0000 000 0
Q ss_pred -------c--------------cchh--------hhHHHHHhcC-h-------hhh---cCCCCCCEEEEEeCCCCCCCC
Q 004456 650 -------F--------------RTLW--------EATNVYIEMS-P-------ITH---ANKIKKPILIIHGEVDDKVGL 689 (752)
Q Consensus 650 -------~--------------~~~~--------~~~~~~~~~~-~-------~~~---~~~~~~P~li~~G~~D~~v~~ 689 (752)
. ..++ .....+.... . +.. ..++++|+|+++|+.|..++
T Consensus 262 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vPvLiI~G~~D~~v~- 340 (383)
T PLN03084 262 ASDKALTSCGPYAMKEDDAMVYRRPYLTSGSSGFALNAISRSMKKELKKYIEEMRSILTDKNWKTPITVCWGLRDRWLN- 340 (383)
T ss_pred HHhhhhcccCccCCCHHHHHHHhccccCCcchHHHHHHHHHHhhcccchhhHHHHhhhccccCCCCEEEEeeCCCCCcC-
Confidence 0 0000 0000000000 0 000 12468999999999999988
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHH
Q 004456 690 FPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 738 (752)
Q Consensus 690 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 738 (752)
...++++.+.. +.+++++|+++|... .+.++++.+.+.+||.
T Consensus 341 -~~~~~~~a~~~-----~a~l~vIp~aGH~~~-~E~Pe~v~~~I~~Fl~ 382 (383)
T PLN03084 341 -YDGVEDFCKSS-----QHKLIELPMAGHHVQ-EDCGEELGGIISGILS 382 (383)
T ss_pred -HHHHHHHHHhc-----CCeEEEECCCCCCcc-hhCHHHHHHHHHHHhh
Confidence 76665555432 458899999999776 5778899999999985
No 123
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.40 E-value=1.3e-11 Score=120.12 Aligned_cols=195 Identities=17% Similarity=0.116 Sum_probs=131.4
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecC--CcEEEEEecCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN--STLLIFTIPSSR 109 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspd--g~~l~~~~~~~~ 109 (752)
.+....||+|++.||-.+. ++..+||-+ ...+..+...+... .+....|+|. +..|+-.+.+
T Consensus 177 Pis~~~fS~ds~~laT~sw--------sG~~kvW~~--~~~~~~~~l~gH~~----~v~~~~fhP~~~~~~lat~s~D-- 240 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSW--------SGLVKVWSV--PQCNLLQTLRGHTS----RVGAAVFHPVDSDLNLATASAD-- 240 (459)
T ss_pred cceeeEeecCCCeEEEeec--------CCceeEeec--CCcceeEEEecccc----ceeeEEEccCCCccceeeeccC--
Confidence 3667899999999999876 555666654 45555555444332 3678899998 4455543221
Q ss_pred CCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCC--CccccCCc-cceeccccCCCC
Q 004456 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--TAKDFGTP-AVYTAVEPSPDQ 186 (752)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G--~~~~l~~~-~~~~~~~~SpDG 186 (752)
+.+.+|++++ ....++.+ ..+..++|.|+|
T Consensus 241 -----------------------------------------------gtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG 273 (459)
T KOG0272|consen 241 -----------------------------------------------GTVKLWKLSQETPLQDLEGHLARVSRVAFHPSG 273 (459)
T ss_pred -----------------------------------------------CceeeeccCCCcchhhhhcchhhheeeeecCCC
Confidence 4566666644 56677777 889999999999
Q ss_pred ceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCC
Q 004456 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (752)
Q Consensus 187 k~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~ 266 (752)
++|.-.+.+. .-.+||+.++..-.+... +..++.+++|.|||. |+.+...
T Consensus 274 ~~L~TasfD~-------------tWRlWD~~tk~ElL~QEG------------Hs~~v~~iaf~~DGS--L~~tGGl--- 323 (459)
T KOG0272|consen 274 KFLGTASFDS-------------TWRLWDLETKSELLLQEG------------HSKGVFSIAFQPDGS--LAATGGL--- 323 (459)
T ss_pred ceeeeccccc-------------chhhcccccchhhHhhcc------------cccccceeEecCCCc--eeeccCc---
Confidence 9999987774 567899998854433332 234578999999999 5555322
Q ss_pred CCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCC
Q 004456 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (752)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 333 (752)
...-.+||+. ++...-.|......+..++|||+|..|+..+.++ ...++|+..
T Consensus 324 --------D~~~RvWDlR--tgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dn----t~kVWDLR~ 376 (459)
T KOG0272|consen 324 --------DSLGRVWDLR--TGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDN----TCKVWDLRM 376 (459)
T ss_pred --------cchhheeecc--cCcEEEEecccccceeeEeECCCceEEeecCCCC----cEEEeeecc
Confidence 2244567774 4444444555566788999999999999877333 344555544
No 124
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.40 E-value=6.7e-11 Score=123.05 Aligned_cols=291 Identities=15% Similarity=0.168 Sum_probs=160.5
Q ss_pred ceeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCcc
Q 004456 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (752)
Q Consensus 5 ~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~ 84 (752)
.+|+++.++. ..|+.+.+.....+.......+||+++.|..+... ....+.-..|.++.++|+.+.+......
T Consensus 13 ~gI~~~~~d~--~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~----~~~~g~v~~~~i~~~~g~L~~~~~~~~~- 85 (345)
T PF10282_consen 13 GGIYVFRFDE--ETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEG----SGDSGGVSSYRIDPDTGTLTLLNSVPSG- 85 (345)
T ss_dssp TEEEEEEEET--TTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETT----SSTTTEEEEEEEETTTTEEEEEEEEEES-
T ss_pred CcEEEEEEcC--CCCCceEeeeecCCCCCceEEEEeCCCEEEEEEcc----ccCCCCEEEEEECCCcceeEEeeeeccC-
Confidence 5899998844 45777777655555578889999999887554321 0013333344444444666555332210
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc
Q 004456 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (752)
Q Consensus 85 ~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~ 164 (752)
......+..+||+++|+.+... .+.+.++++
T Consensus 86 -g~~p~~i~~~~~g~~l~vany~------------------------------------------------~g~v~v~~l 116 (345)
T PF10282_consen 86 -GSSPCHIAVDPDGRFLYVANYG------------------------------------------------GGSVSVFPL 116 (345)
T ss_dssp -SSCEEEEEECTTSSEEEEEETT------------------------------------------------TTEEEEEEE
T ss_pred -CCCcEEEEEecCCCEEEEEEcc------------------------------------------------CCeEEEEEc
Confidence 0012466888999999886321 144555555
Q ss_pred --CCCcccc---C-----------Cc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCce--eEEec
Q 004456 165 --DGTAKDF---G-----------TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL--VRELC 225 (752)
Q Consensus 165 --~G~~~~l---~-----------~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~ 225 (752)
+|..... . .. .....+.++|||++|++..... ..|++++.+... .....
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~------------D~v~~~~~~~~~~~l~~~~ 184 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA------------DRVYVYDIDDDTGKLTPVD 184 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT------------TEEEEEEE-TTS-TEEEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC------------CEEEEEEEeCCCceEEEee
Confidence 4532221 1 11 3456889999999998876554 378888876543 32211
Q ss_pred CCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEe---ec-----
Q 004456 226 DLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH---KL----- 297 (752)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~---~~----- 297 (752)
..... ...++|.+.|+|||++ +|.+.. ..+.|.+++..+ ..+..+.+. ..
T Consensus 185 ~~~~~---------~G~GPRh~~f~pdg~~-~Yv~~e-----------~s~~v~v~~~~~-~~g~~~~~~~~~~~~~~~~ 242 (345)
T PF10282_consen 185 SIKVP---------PGSGPRHLAFSPDGKY-AYVVNE-----------LSNTVSVFDYDP-SDGSLTEIQTISTLPEGFT 242 (345)
T ss_dssp EEECS---------TTSSEEEEEE-TTSSE-EEEEET-----------TTTEEEEEEEET-TTTEEEEEEEEESCETTSC
T ss_pred ccccc---------cCCCCcEEEEcCCcCE-EEEecC-----------CCCcEEEEeecc-cCCceeEEEEeeecccccc
Confidence 11111 1245889999999997 777753 233455555521 122222221 11
Q ss_pred -ccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCC-ceeeCCCCCeEEEeeeecC
Q 004456 298 -DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSP-MMTRTSTGTNVIAKIKKEN 375 (752)
Q Consensus 298 -~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-~~~~s~dg~~l~~~~~~~~ 375 (752)
......++.||||+.|+.+. ...+.-.+|.++..++ ....+....... ..| .+..+|||++|+.+.+.
T Consensus 243 ~~~~~~~i~ispdg~~lyvsn-r~~~sI~vf~~d~~~g--~l~~~~~~~~~G-----~~Pr~~~~s~~g~~l~Va~~~-- 312 (345)
T PF10282_consen 243 GENAPAEIAISPDGRFLYVSN-RGSNSISVFDLDPATG--TLTLVQTVPTGG-----KFPRHFAFSPDGRYLYVANQD-- 312 (345)
T ss_dssp SSSSEEEEEE-TTSSEEEEEE-CTTTEEEEEEECTTTT--TEEEEEEEEESS-----SSEEEEEE-TTSSEEEEEETT--
T ss_pred ccCCceeEEEecCCCEEEEEe-ccCCEEEEEEEecCCC--ceEEEEEEeCCC-----CCccEEEEeCCCCEEEEEecC--
Confidence 11356788999999777654 4444444555544443 333332211111 111 26689999999998743
Q ss_pred CcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEe
Q 004456 376 DEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 411 (752)
Q Consensus 376 ~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~ 411 (752)
.+.-.++.+|.++|.++.+.
T Consensus 313 ----------------s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 313 ----------------SNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp ----------------TTEEEEEEEETTTTEEEEEE
T ss_pred ----------------CCeEEEEEEeCCCCcEEEec
Confidence 23334677788889887664
No 125
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=99.39 E-value=6.5e-11 Score=124.08 Aligned_cols=208 Identities=15% Similarity=0.084 Sum_probs=126.6
Q ss_pred CCceEEEEEEcC-CCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCc-
Q 004456 479 SLQKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF- 556 (752)
Q Consensus 479 ~~~~~~~~~~~~-~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~- 556 (752)
....+.+++.+. -|.....++|+|+++. ..++|+|+++||..+.. ..........|.+.|.
T Consensus 177 ~g~~~~~~~~S~~Lg~~r~v~VY~P~~y~---~~~~PvlyllDG~~w~~--------------~~~~~~~ld~li~~g~i 239 (411)
T PRK10439 177 ESPAKEIIWKSERLGNSRRVWIYTTGDAA---PEERPLAILLDGQFWAE--------------SMPVWPALDSLTHRGQL 239 (411)
T ss_pred CCceEEEEEEccccCCceEEEEEECCCCC---CCCCCEEEEEECHHhhh--------------cCCHHHHHHHHHHcCCC
Confidence 344566666654 4567899999999875 23599999999954211 0001123446666773
Q ss_pred ---EEEecCCCCCCCCCCCCC-CchhHHHHHHHHHHHHHHHHHcC--CCCCCcEEEEEeChHHHHHHHHHHhCCCceeEE
Q 004456 557 ---AVLAGPSIPIIGEGDKLP-NDRFVEQLVSSAEAAVEEVVRRG--VADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCG 630 (752)
Q Consensus 557 ---~v~~~~~~~~~g~g~~~~-~~~~~~~~~~d~~~~~~~l~~~~--~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~ 630 (752)
+++.++..+......... ...+...+.+ +++.++.++. ..|+++.+|+|+||||+.|+.++.++|+.|.++
T Consensus 240 ~P~ivV~id~~~~~~R~~el~~~~~f~~~l~~---eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v 316 (411)
T PRK10439 240 PPAVYLLIDAIDTTHRSQELPCNADFWLAVQQ---ELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCV 316 (411)
T ss_pred CceEEEEECCCCcccccccCCchHHHHHHHHH---HHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEE
Confidence 334433322111111111 1122223333 4456666553 247789999999999999999999999999999
Q ss_pred EEccCCCCCCCCccCccccccchhhhHHHHHhcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q 004456 631 IARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRL 710 (752)
Q Consensus 631 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~ 710 (752)
++++|.+-+.... .....| ..+.+... ........++|.+|..|..+ ....+++.+.|+++|.++++
T Consensus 317 ~s~Sgs~ww~~~~-----~~~~~~-l~~~l~~~----~~~~~~lr~~i~~G~~E~~~---~~~~~~l~~~L~~~G~~~~~ 383 (411)
T PRK10439 317 LSQSGSFWWPHRG-----GQQEGV-LLEQLKAG----EVSARGLRIVLEAGRREPMI---MRANQALYAQLHPAGHSVFW 383 (411)
T ss_pred EEeccceecCCcc-----CCchhH-HHHHHHhc----ccCCCCceEEEeCCCCCchH---HHHHHHHHHHHHHCCCcEEE
Confidence 9999853211000 000000 01111110 01112346888999998654 57789999999999999999
Q ss_pred EEeCCCCccC
Q 004456 711 VLLPFEHHVY 720 (752)
Q Consensus 711 ~~~~~~~H~~ 720 (752)
.+++| ||..
T Consensus 384 ~~~~G-GHd~ 392 (411)
T PRK10439 384 RQVDG-GHDA 392 (411)
T ss_pred EECCC-CcCH
Confidence 99987 6963
No 126
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.38 E-value=1.8e-11 Score=122.92 Aligned_cols=194 Identities=15% Similarity=0.096 Sum_probs=113.3
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCCc---hhHHHHHHHHHHH
Q 004456 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAA 589 (752)
Q Consensus 513 ~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~ 589 (752)
.|.||++||.+.. ... +..+...|.++||.|++ .+.+|+|.+.... .......+++.
T Consensus 18 ~p~vvliHG~~~~-----------~~~----w~~~~~~L~~~g~~vi~---~dl~g~G~s~~~~~~~~~~~~~~~~l~-- 77 (273)
T PLN02211 18 PPHFVLIHGISGG-----------SWC----WYKIRCLMENSGYKVTC---IDLKSAGIDQSDADSVTTFDEYNKPLI-- 77 (273)
T ss_pred CCeEEEECCCCCC-----------cCc----HHHHHHHHHhCCCEEEE---ecccCCCCCCCCcccCCCHHHHHHHHH--
Confidence 6899999995321 111 12345567778999999 5566777542211 23334344433
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCC---C-----c--------------cCcc
Q 004456 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL---T-----P--------------FGFQ 647 (752)
Q Consensus 590 ~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~---~-----~--------------~~~~ 647 (752)
+++.+... ..++.|+||||||.+++.++.++|++++++|.+++...... . . +...
T Consensus 78 -~~i~~l~~--~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (273)
T PLN02211 78 -DFLSSLPE--NEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATMLKLGFQTDEDMKDGVPDLSEFGDVYELGFGLG 154 (273)
T ss_pred -HHHHhcCC--CCCEEEEEECchHHHHHHHHHhChhheeEEEEeccccCCCCCCHHHHHhccccchhhhccceeeeeccC
Confidence 34433321 36899999999999999999999999999999876421000 0 0 0000
Q ss_pred -----ccccchhh-------------hHHHHHh---cChhh---------hcCCC-CCCEEEEEeCCCCCCCCCHHHHHH
Q 004456 648 -----TEFRTLWE-------------ATNVYIE---MSPIT---------HANKI-KKPILIIHGEVDDKVGLFPMQAER 696 (752)
Q Consensus 648 -----~~~~~~~~-------------~~~~~~~---~~~~~---------~~~~~-~~P~li~~G~~D~~v~~~~~~~~~ 696 (752)
.......+ ....+.. ..+.. ...++ ++|+++|.|++|..+| ++..+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~l~I~g~~D~~ip--~~~~~~ 232 (273)
T PLN02211 155 PDQPPTSAIIKKEFRRKILYQMSPQEDSTLAAMLLRPGPILALRSARFEEETGDIDKVPRVYIKTLHDHVVK--PEQQEA 232 (273)
T ss_pred CCCCCceeeeCHHHHHHHHhcCCCHHHHHHHHHhcCCcCccccccccccccccccCccceEEEEeCCCCCCC--HHHHHH
Confidence 00000000 0000000 00100 11234 6899999999999999 887777
Q ss_pred HHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHH
Q 004456 697 FFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 737 (752)
Q Consensus 697 ~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 737 (752)
+.+.+.. .+++.++ +||... .+.++.+...+.+..
T Consensus 233 m~~~~~~----~~~~~l~-~gH~p~-ls~P~~~~~~i~~~a 267 (273)
T PLN02211 233 MIKRWPP----SQVYELE-SDHSPF-FSTPFLLFGLLIKAA 267 (273)
T ss_pred HHHhCCc----cEEEEEC-CCCCcc-ccCHHHHHHHHHHHH
Confidence 7766532 2677776 799865 455666665555543
No 127
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.38 E-value=3.4e-11 Score=113.85 Aligned_cols=234 Identities=19% Similarity=0.189 Sum_probs=142.4
Q ss_pred EEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecC
Q 004456 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 562 (752)
Q Consensus 483 ~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~ 562 (752)
+..++. .++....+++|.|++... ..|+||++||+.+.. .++.+. .+| -......||.|+.++
T Consensus 36 ~~~s~~-~~g~~r~y~l~vP~g~~~----~apLvv~LHG~~~sg---ag~~~~--sg~-------d~lAd~~gFlV~yPd 98 (312)
T COG3509 36 SVASFD-VNGLKRSYRLYVPPGLPS----GAPLVVVLHGSGGSG---AGQLHG--TGW-------DALADREGFLVAYPD 98 (312)
T ss_pred Cccccc-cCCCccceEEEcCCCCCC----CCCEEEEEecCCCCh---HHhhcc--cch-------hhhhcccCcEEECcC
Confidence 334444 367789999999998642 249999999975432 111111 112 122246899999964
Q ss_pred CCCCCC----CCCCCCCc--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004456 563 SIPIIG----EGDKLPND--RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (752)
Q Consensus 563 ~~~~~g----~g~~~~~~--~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~ 636 (752)
..+..- .+..+.+. ....+.+..+.++++.|..+..||++||++.|.|.||.|+..+++.+|+.|.++..+++.
T Consensus 99 g~~~~wn~~~~~~~~~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~ 178 (312)
T COG3509 99 GYDRAWNANGCGNWFGPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGL 178 (312)
T ss_pred ccccccCCCcccccCCcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeecc
Confidence 433221 12222222 233466788889999999999999999999999999999999999999999999998885
Q ss_pred CCCCCCccCccccccchhhhHHHHHhcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhC------------
Q 004456 637 YNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGH------------ 704 (752)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~------------ 704 (752)
.- .........+......-...+|......=..| |.+|..|..|+ ..+..+..+++...
T Consensus 179 ~~-----~~~a~~~~rp~~~m~~~G~~Dp~~p~~gG~~~--~g~g~~~~~v~--~~~~~~~Waa~ng~~~~p~~~~~~~~ 249 (312)
T COG3509 179 LA-----LGVACTPPRPVSVMAFHGTADPLNPYHGGGVP--IGRGQRDGVVS--AADLAARWAAVNGCQAGPDTAELPDV 249 (312)
T ss_pred cC-----CCcccCCCCchhHHHhcCCCCCCCCCCCCCcc--ccccccccccc--HHHHHHHHHHhcCCCCCCcccccCCC
Confidence 41 10000000011100111111221111111133 78888888766 55555555554322
Q ss_pred -----------CCcEEEEEeCCCCccCCcccc-----------HHHHHHHHHHHHHHHhc
Q 004456 705 -----------GALSRLVLLPFEHHVYAAREN-----------VMHVIWETDRWLQKYCL 742 (752)
Q Consensus 705 -----------~~~~~~~~~~~~~H~~~~~~~-----------~~~~~~~~~~fl~~~l~ 742 (752)
+.++++..+.++||....... -....+.|.+|+..+-.
T Consensus 250 ~~~~~~~~~~~~~~V~~y~i~g~GH~wp~~~~~~~~~~g~~t~~~dat~~iw~Ff~~~~R 309 (312)
T COG3509 250 GDGTDYDTCDGNARVELYTIDGGGHTWPGGTQYGPAALGMSTRGFDATERIWRFFRQHRR 309 (312)
T ss_pred cccceeeccCCCcceEEEEEeCCcccCcCCCCCCcccccccccCcchHHHHHHHHHhccc
Confidence 124789999999998653111 12356778899887643
No 128
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.38 E-value=2.2e-10 Score=119.60 Aligned_cols=300 Identities=17% Similarity=0.164 Sum_probs=183.5
Q ss_pred ceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCC
Q 004456 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (752)
Q Consensus 31 ~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~ 110 (752)
.++....|+-.|.+|||.+. ..++|.|++-.+..-..-.+ .+ ...+..++.||||+.|+-...
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~---------klgQLlVweWqsEsYVlKQQ-gH---~~~i~~l~YSpDgq~iaTG~e---- 370 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCS---------KLGQLLVWEWQSESYVLKQQ-GH---SDRITSLAYSPDGQLIATGAE---- 370 (893)
T ss_pred ceeeEEEecccCCEEEEcCC---------ccceEEEEEeeccceeeecc-cc---ccceeeEEECCCCcEEEeccC----
Confidence 36788999999999999764 23577776655443211111 11 113567899999999986532
Q ss_pred CCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CC-CccccCCc-cceeccccCCCCc
Q 004456 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQK 187 (752)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G-~~~~l~~~-~~~~~~~~SpDGk 187 (752)
.+.|.+||. .| -....+++ ..+..+.|+.+|+
T Consensus 371 ---------------------------------------------DgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~ 405 (893)
T KOG0291|consen 371 ---------------------------------------------DGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN 405 (893)
T ss_pred ---------------------------------------------CCcEEEEeccCceEEEEeccCCCceEEEEEEecCC
Confidence 167889998 77 66777888 8899999999999
Q ss_pred eEEEEecccCccccccccCccccEEEEecC-CceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCC
Q 004456 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (752)
Q Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~ 266 (752)
.|+-.+.++ .+..||+. ....+.++.+...+ ...++..|.|. |+++...
T Consensus 406 ~llssSLDG-------------tVRAwDlkRYrNfRTft~P~p~Q------------fscvavD~sGe--lV~AG~~--- 455 (893)
T KOG0291|consen 406 VLLSSSLDG-------------TVRAWDLKRYRNFRTFTSPEPIQ------------FSCVAVDPSGE--LVCAGAQ--- 455 (893)
T ss_pred EEEEeecCC-------------eEEeeeecccceeeeecCCCcee------------eeEEEEcCCCC--EEEeecc---
Confidence 999888774 78899986 44555555443220 12356777787 6776432
Q ss_pred CCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCC--Cccceecccc
Q 004456 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK--DVAPRVLFDR 344 (752)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~--~~~~~~l~~~ 344 (752)
..-.|++|++. .|.....|...++.+..++|+|+|..|+.++|+.+ +.++++-+. ..++..+...
T Consensus 456 -------d~F~IfvWS~q--TGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT----VRiW~if~s~~~vEtl~i~sd 522 (893)
T KOG0291|consen 456 -------DSFEIFVWSVQ--TGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT----VRIWDIFSSSGTVETLEIRSD 522 (893)
T ss_pred -------ceEEEEEEEee--cCeeeehhcCCCCcceeeEEccccCeEEeccccce----EEEEEeeccCceeeeEeeccc
Confidence 33479999994 34444556778888999999999999988887663 444444332 2333333322
Q ss_pred ccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCce--eEEeeccchhhhhce
Q 004456 345 VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSK--ERIWESNREKYFETA 422 (752)
Q Consensus 345 ~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~--~~l~~~~~~~~~~~~ 422 (752)
... ++++|||+.|+++..+ +.+.+|...-...-+. -=-+.|+.+|+. .+++..+.. ..
T Consensus 523 vl~----------vsfrPdG~elaVaTld----gqItf~d~~~~~q~~~--IdgrkD~~~gR~~~D~~ta~~sa----~~ 582 (893)
T KOG0291|consen 523 VLA----------VSFRPDGKELAVATLD----GQITFFDIKEAVQVGS--IDGRKDLSGGRKETDRITAENSA----KG 582 (893)
T ss_pred eeE----------EEEcCCCCeEEEEEec----ceEEEEEhhhceeecc--ccchhhccccccccceeehhhcc----cC
Confidence 221 6789999999999855 2232322111100000 001223333332 122222111 01
Q ss_pred eeeecCCcceecccCCCEEEEEEecCCCCcEEEEEECCCCC
Q 004456 423 VALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKK 463 (752)
Q Consensus 423 ~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~~g~ 463 (752)
.. ...+-+|+||+.|+..-.+. .|..++..++-
T Consensus 583 K~----Ftti~ySaDG~~IlAgG~sn----~iCiY~v~~~v 615 (893)
T KOG0291|consen 583 KT----FTTICYSADGKCILAGGESN----SICIYDVPEGV 615 (893)
T ss_pred Cc----eEEEEEcCCCCEEEecCCcc----cEEEEECchhh
Confidence 11 22357899999887654333 37777877653
No 129
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.38 E-value=1.7e-11 Score=121.64 Aligned_cols=188 Identities=14% Similarity=0.120 Sum_probs=112.3
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCCch-hHHHHHHHHHHHHH
Q 004456 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDR-FVEQLVSSAEAAVE 591 (752)
Q Consensus 513 ~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~-~~~~~~~d~~~~~~ 591 (752)
.|.||++||.+... ..| ......| .+|.|++ .+.+|+|.+..... ......+|+.+.++
T Consensus 2 ~p~vvllHG~~~~~-----------~~w----~~~~~~l--~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~l~~~l~ 61 (242)
T PRK11126 2 LPWLVFLHGLLGSG-----------QDW----QPVGEAL--PDYPRLY---IDLPGHGGSAAISVDGFADVSRLLSQTLQ 61 (242)
T ss_pred CCEEEEECCCCCCh-----------HHH----HHHHHHc--CCCCEEE---ecCCCCCCCCCccccCHHHHHHHHHHHHH
Confidence 47899999964211 111 1234444 4799999 56677777644321 23344444444443
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc-eeEEEEccCCCCCCCCc-----------cC--cccc--------
Q 004456 592 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL-FCCGIARSGSYNKTLTP-----------FG--FQTE-------- 649 (752)
Q Consensus 592 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~-~~~~v~~~~~~~~~~~~-----------~~--~~~~-------- 649 (752)
.+ ..+++.++||||||.+++.++.++|+. ++++++.++........ +. +...
T Consensus 62 ~~------~~~~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (242)
T PRK11126 62 SY------NILPYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNPGLQNAEERQARWQNDRQWAQRFRQEPLEQVLAD 135 (242)
T ss_pred Hc------CCCCeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCCCCCCHHHHHHHHhhhHHHHHHhccCcHHHHHHH
Confidence 32 246899999999999999999998654 99999877543211000 00 0000
Q ss_pred ----------ccchhhh-------------HHHHHhc------ChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHH
Q 004456 650 ----------FRTLWEA-------------TNVYIEM------SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDA 700 (752)
Q Consensus 650 ----------~~~~~~~-------------~~~~~~~------~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~ 700 (752)
....... ...+... +....+.++++|+++++|++|..+. .+.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-------~~~~~ 208 (242)
T PRK11126 136 WYQQPVFASLNAEQRQQLVAKRSNNNGAAVAAMLEATSLAKQPDLRPALQALTFPFYYLCGERDSKFQ-------ALAQQ 208 (242)
T ss_pred HHhcchhhccCccHHHHHHHhcccCCHHHHHHHHHhcCcccCCcHHHHhhccCCCeEEEEeCCcchHH-------HHHHH
Confidence 0000000 0000000 1112456788999999999997532 12222
Q ss_pred HHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHHH
Q 004456 701 LKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 739 (752)
Q Consensus 701 l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 739 (752)
...++++++++||.+. .+.++.+.+.+.+||.+
T Consensus 209 -----~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 209 -----LALPLHVIPNAGHNAH-RENPAAFAASLAQILRL 241 (242)
T ss_pred -----hcCeEEEeCCCCCchh-hhChHHHHHHHHHHHhh
Confidence 1468999999999776 67788899999999865
No 130
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.38 E-value=8.8e-11 Score=108.51 Aligned_cols=258 Identities=17% Similarity=0.071 Sum_probs=160.4
Q ss_pred cceeEEeecCCCC--CCCCceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCC
Q 004456 4 FTGIGIHRLLPDD--SLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (752)
Q Consensus 4 ~~~i~~~~~~~~~--~~g~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~ 81 (752)
.+.|.++.|..|+ -+-..+++++.. ..+.....|+||.+..-.+ .+..+.++|+++|+.++..-+.
T Consensus 37 Dk~ii~W~L~~dd~~~G~~~r~~~GHs--H~v~dv~~s~dg~~alS~s----------wD~~lrlWDl~~g~~t~~f~GH 104 (315)
T KOG0279|consen 37 DKTIIVWKLTSDDIKYGVPVRRLTGHS--HFVSDVVLSSDGNFALSAS----------WDGTLRLWDLATGESTRRFVGH 104 (315)
T ss_pred ceEEEEEEeccCccccCceeeeeeccc--eEecceEEccCCceEEecc----------ccceEEEEEecCCcEEEEEEec
Confidence 4667777776543 233566777533 3588999999998877653 3478999999998876665444
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEE
Q 004456 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (752)
Q Consensus 82 ~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~ 161 (752)
.. .+...++|||.+.|+-.+. ...|.+
T Consensus 105 ~~----dVlsva~s~dn~qivSGSr-------------------------------------------------DkTikl 131 (315)
T KOG0279|consen 105 TK----DVLSVAFSTDNRQIVSGSR-------------------------------------------------DKTIKL 131 (315)
T ss_pred CC----ceEEEEecCCCceeecCCC-------------------------------------------------cceeee
Confidence 32 4678899999999986432 146888
Q ss_pred EccCC--CccccCC--ccceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCccc
Q 004456 162 GSLDG--TAKDFGT--PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCY 237 (752)
Q Consensus 162 ~~~~G--~~~~l~~--~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~ 237 (752)
|+.-| +.+.... .+.+.-+.|||.-...++.+...+ ..+.+||+++-+.+.-...
T Consensus 132 wnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~D-----------ktvKvWnl~~~~l~~~~~g---------- 190 (315)
T KOG0279|consen 132 WNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWD-----------KTVKVWNLRNCQLRTTFIG---------- 190 (315)
T ss_pred eeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCC-----------ceEEEEccCCcchhhcccc----------
Confidence 88844 3332222 278889999999744434333321 4789999998765543222
Q ss_pred CCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEee
Q 004456 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNET 317 (752)
Q Consensus 238 ~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~ 317 (752)
+...+..+.+||||.. ++.- ...+.+++||++ ++ +.-.-......+..++|||.--+|+.+.
T Consensus 191 --h~~~v~t~~vSpDGsl-casG------------gkdg~~~LwdL~--~~-k~lysl~a~~~v~sl~fspnrywL~~at 252 (315)
T KOG0279|consen 191 --HSGYVNTVTVSPDGSL-CASG------------GKDGEAMLWDLN--EG-KNLYSLEAFDIVNSLCFSPNRYWLCAAT 252 (315)
T ss_pred --ccccEEEEEECCCCCE-EecC------------CCCceEEEEEcc--CC-ceeEeccCCCeEeeEEecCCceeEeecc
Confidence 2233567999999995 3321 144588999993 22 2222234555688999999887776654
Q ss_pred ecccCceeEEEEcCCCCCccceecc-ccccc-cccCCCCCCceeeCCCCCeEEEee
Q 004456 318 WYKTSQTRTWLVCPGSKDVAPRVLF-DRVFE-NVYSDPGSPMMTRTSTGTNVIAKI 371 (752)
Q Consensus 318 ~~~~~~~~l~~~~~~~~~~~~~~l~-~~~~~-~~~~~~~~p~~~~s~dg~~l~~~~ 371 (752)
. ..|.++++++.. ....+. +.... .....+.--+++||+||..|+...
T Consensus 253 -~----~sIkIwdl~~~~-~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~ 302 (315)
T KOG0279|consen 253 -A----TSIKIWDLESKA-VVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGY 302 (315)
T ss_pred -C----CceEEEeccchh-hhhhccccccccccccCCcEEEEEEEcCCCcEEEeee
Confidence 1 127777777641 111111 11110 000011122578999999987776
No 131
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=99.37 E-value=7.5e-11 Score=118.42 Aligned_cols=242 Identities=15% Similarity=0.138 Sum_probs=150.2
Q ss_pred cCCCceEEEEEEcCCCcEEEEEEEeCCCCC-CCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCC
Q 004456 477 LASLQKEMIKYQRKDGVPLTATLYLPPGYD-QSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR 555 (752)
Q Consensus 477 ~~~~~~~~~~~~~~~g~~~~~~l~~P~~~~-~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 555 (752)
.+....++.-+...||..+....+.+.... ..+.+..|+||++||-. ++ ....+...++..+..+|
T Consensus 88 ~p~~~y~Reii~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGlt-----------g~--S~~~YVr~lv~~a~~~G 154 (409)
T KOG1838|consen 88 KPPVEYTREIIKTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLT-----------GG--SHESYVRHLVHEAQRKG 154 (409)
T ss_pred CCCCcceeEEEEeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCC-----------CC--ChhHHHHHHHHHHHhCC
Confidence 344445555555568888888888765531 11234579999999942 21 12222334555667899
Q ss_pred cEEEecCCCCCCCCCCCCC--CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC--ceeEEE
Q 004456 556 FAVLAGPSIPIIGEGDKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH--LFCCGI 631 (752)
Q Consensus 556 ~~v~~~~~~~~~g~g~~~~--~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~--~~~~~v 631 (752)
|.|++.+.+ |.+++.- +.-+-....+|+.+++++++++.. ..++..+|+||||++...++.+..+ .+.+++
T Consensus 155 ~r~VVfN~R---G~~g~~LtTpr~f~ag~t~Dl~~~v~~i~~~~P--~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~ 229 (409)
T KOG1838|consen 155 YRVVVFNHR---GLGGSKLTTPRLFTAGWTEDLREVVNHIKKRYP--QAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAV 229 (409)
T ss_pred cEEEEECCC---CCCCCccCCCceeecCCHHHHHHHHHHHHHhCC--CCceEEEEecchHHHHHHHhhhccCCCCceeEE
Confidence 999994444 4443322 222334557899999999999853 3589999999999999999887533 355666
Q ss_pred EccCCCCCCCCc-------c----------Cc--------------------cccccch--------------hhhHHHH
Q 004456 632 ARSGSYNKTLTP-------F----------GF--------------------QTEFRTL--------------WEATNVY 660 (752)
Q Consensus 632 ~~~~~~~~~~~~-------~----------~~--------------------~~~~~~~--------------~~~~~~~ 660 (752)
++|-..|..... . +. .....+. -...+.|
T Consensus 230 ~v~~Pwd~~~~~~~~~~~~~~~~y~~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~~~deYY 309 (409)
T KOG1838|consen 230 AVCNPWDLLAASRSIETPLYRRFYNRALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFKSVDEYY 309 (409)
T ss_pred EEeccchhhhhhhHHhcccchHHHHHHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCCcHHHHH
Confidence 655444411000 0 00 0000000 0123456
Q ss_pred HhcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccc---cHHHHHHH-HHHH
Q 004456 661 IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARE---NVMHVIWE-TDRW 736 (752)
Q Consensus 661 ~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~---~~~~~~~~-~~~f 736 (752)
.+.++..++++|++|+|.++..+|+++| .. +.-. +..++ .+.+-+++-..+||...... +...+.+. +.+|
T Consensus 310 ~~aSs~~~v~~I~VP~L~ina~DDPv~p--~~-~ip~-~~~~~-np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef 384 (409)
T KOG1838|consen 310 KKASSSNYVDKIKVPLLCINAADDPVVP--EE-AIPI-DDIKS-NPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEF 384 (409)
T ss_pred hhcchhhhcccccccEEEEecCCCCCCC--cc-cCCH-HHHhc-CCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHH
Confidence 7778999999999999999999999998 32 2222 22223 35778888888999643222 44556666 7777
Q ss_pred HHHHh
Q 004456 737 LQKYC 741 (752)
Q Consensus 737 l~~~l 741 (752)
+....
T Consensus 385 ~~~~~ 389 (409)
T KOG1838|consen 385 LGNAI 389 (409)
T ss_pred HHHHH
Confidence 76543
No 132
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.36 E-value=1.7e-11 Score=118.70 Aligned_cols=222 Identities=14% Similarity=0.052 Sum_probs=130.4
Q ss_pred eEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEec
Q 004456 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (752)
Q Consensus 482 ~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~ 561 (752)
.+.+.++ ++..+...-.-+.. .....+|++||.|-.. +++......|++ ...|.+
T Consensus 67 ~~~v~i~--~~~~iw~~~~~~~~------~~~~plVliHGyGAg~---------------g~f~~Nf~~La~-~~~vya- 121 (365)
T KOG4409|consen 67 KKYVRIP--NGIEIWTITVSNES------ANKTPLVLIHGYGAGL---------------GLFFRNFDDLAK-IRNVYA- 121 (365)
T ss_pred eeeeecC--CCceeEEEeecccc------cCCCcEEEEeccchhH---------------HHHHHhhhhhhh-cCceEE-
Confidence 4444444 44444444444432 1256788899954111 111122334454 888888
Q ss_pred CCCCCCCCCCCCCCchh--HHHHHHHHHHHH-HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCC
Q 004456 562 PSIPIIGEGDKLPNDRF--VEQLVSSAEAAV-EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (752)
Q Consensus 562 ~~~~~~g~g~~~~~~~~--~~~~~~d~~~~~-~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~ 638 (752)
+|..|+|++..+.-. .......+.+.+ +|-++.+ .+++.|+|||+|||++..+|.++|++|+..|+.+|.--
T Consensus 122 --iDllG~G~SSRP~F~~d~~~~e~~fvesiE~WR~~~~---L~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf 196 (365)
T KOG4409|consen 122 --IDLLGFGRSSRPKFSIDPTTAEKEFVESIEQWRKKMG---LEKMILVGHSFGGYLAAKYALKYPERVEKLILVSPWGF 196 (365)
T ss_pred --ecccCCCCCCCCCCCCCcccchHHHHHHHHHHHHHcC---CcceeEeeccchHHHHHHHHHhChHhhceEEEeccccc
Confidence 677888888665311 111222444555 4444444 36999999999999999999999999999999998621
Q ss_pred CC---CCc------cCcc----------ccc-----cch---------------------hhhH-H--------------
Q 004456 639 KT---LTP------FGFQ----------TEF-----RTL---------------------WEAT-N-------------- 658 (752)
Q Consensus 639 ~~---~~~------~~~~----------~~~-----~~~---------------------~~~~-~-------------- 658 (752)
.. ..+ ..+. +.. ..+ .++. .
T Consensus 197 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~nPl~~LR~~Gp~Gp~Lv~~~~~d~~~k~~~~~~ed~l~~YiY~~n~~~psgE 276 (365)
T KOG4409|consen 197 PEKPDSEPEFTKPPPEWYKALFLVATNFNPLALLRLMGPLGPKLVSRLRPDRFRKFPSLIEEDFLHEYIYHCNAQNPSGE 276 (365)
T ss_pred ccCCCcchhhcCCChHHHhhhhhhhhcCCHHHHHHhccccchHHHhhhhHHHHHhccccchhHHHHHHHHHhcCCCCcHH
Confidence 11 000 0000 000 000 0000 0
Q ss_pred ----------HHHhcChhhhcCCCC--CCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccH
Q 004456 659 ----------VYIEMSPITHANKIK--KPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENV 726 (752)
Q Consensus 659 ----------~~~~~~~~~~~~~~~--~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~ 726 (752)
.+++..-+.++..++ +|+++|+|++|+.= ...+.++...+ ....++.+++|++||... .+++
T Consensus 277 ~~fk~l~~~~g~Ar~Pm~~r~~~l~~~~pv~fiyG~~dWmD---~~~g~~~~~~~--~~~~~~~~~v~~aGHhvy-lDnp 350 (365)
T KOG4409|consen 277 TAFKNLFEPGGWARRPMIQRLRELKKDVPVTFIYGDRDWMD---KNAGLEVTKSL--MKEYVEIIIVPGAGHHVY-LDNP 350 (365)
T ss_pred HHHHHHHhccchhhhhHHHHHHhhccCCCEEEEecCccccc---chhHHHHHHHh--hcccceEEEecCCCceee-cCCH
Confidence 001111123344444 99999999999753 34455555544 335689999999999866 6778
Q ss_pred HHHHHHHHHHHHH
Q 004456 727 MHVIWETDRWLQK 739 (752)
Q Consensus 727 ~~~~~~~~~fl~~ 739 (752)
+.+.+.++.++.+
T Consensus 351 ~~Fn~~v~~~~~~ 363 (365)
T KOG4409|consen 351 EFFNQIVLEECDK 363 (365)
T ss_pred HHHHHHHHHHHhc
Confidence 8888888888765
No 133
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.35 E-value=1.7e-09 Score=108.60 Aligned_cols=282 Identities=15% Similarity=0.141 Sum_probs=148.8
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (752)
...-.++||.|-|||.. +..++|.|++....+ .-| ..+...+.+.+.+++|++|+++|+.+....+.
T Consensus 61 ~vtVAkySPsG~yiASG----------D~sG~vRIWdtt~~~-hiL-Knef~v~aG~I~Di~Wd~ds~RI~avGEGrer- 127 (603)
T KOG0318|consen 61 QVTVAKYSPSGFYIASG----------DVSGKVRIWDTTQKE-HIL-KNEFQVLAGPIKDISWDFDSKRIAAVGEGRER- 127 (603)
T ss_pred eeEEEEeCCCceEEeec----------CCcCcEEEEeccCcc-eee-eeeeeecccccccceeCCCCcEEEEEecCccc-
Confidence 46778999999999883 556788888855432 212 11222222246789999999999987542111
Q ss_pred CCCCccCCCCCceeccc-ccc------cccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCcccc----CCc-ccee
Q 004456 112 PPKKTMVPLGPKIQSNE-QKN------IIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDF----GTP-AVYT 178 (752)
Q Consensus 112 ~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~~l----~~~-~~~~ 178 (752)
+......+.|-..=+.. ..+ ..+.|.++- ...+.=..+.. .|.+-++ .++ .-+.
T Consensus 128 fg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi-------------~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~ 194 (603)
T KOG0318|consen 128 FGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRI-------------ATGSDDNTVAFFEGPPFKFKSSFREHSKFVN 194 (603)
T ss_pred eeEEEEecCCCccceeeccceeEeeeeccCCCceEE-------------EeccCCCeEEEeeCCCeeeeeccccccccee
Confidence 11111111110000000 000 000000000 00000011111 3322111 122 4567
Q ss_pred ccccCCCCceEEEEecccCccccccccCccccEEEEecCCcee-EEecCCCCCCCCCcccCCccccccceeeeeCCCceE
Q 004456 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTL 257 (752)
Q Consensus 179 ~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l 257 (752)
.+.|||||++++-...++ ++++||-.+++. -.|.... ++..+++.++||||++. +
T Consensus 195 ~VRysPDG~~Fat~gsDg-------------ki~iyDGktge~vg~l~~~~----------aHkGsIfalsWsPDs~~-~ 250 (603)
T KOG0318|consen 195 CVRYSPDGSRFATAGSDG-------------KIYIYDGKTGEKVGELEDSD----------AHKGSIFALSWSPDSTQ-F 250 (603)
T ss_pred eEEECCCCCeEEEecCCc-------------cEEEEcCCCccEEEEecCCC----------CccccEEEEEECCCCce-E
Confidence 899999999998887764 899999776644 4444321 23355889999999998 5
Q ss_pred EEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeeccc-ceee--eeeecCCceEEEeeecccCceeEEEEcCCCC
Q 004456 258 YWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL-RFRS--VSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (752)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~--~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 334 (752)
+-++ ....+-+||+. ..+..+.+..... ...+ ..|- ...|+..+ -.+.|-.+++...
T Consensus 251 ~T~S------------aDkt~KIWdVs--~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVS----l~G~in~ln~~d~ 310 (603)
T KOG0318|consen 251 LTVS------------ADKTIKIWDVS--TNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVS----LSGTINYLNPSDP 310 (603)
T ss_pred EEec------------CCceEEEEEee--ccceEEEeecCCchhceEEEEEEe--CCeEEEEE----cCcEEEEecccCC
Confidence 5554 22356777773 2222333332221 1111 2355 33344433 2334667777664
Q ss_pred CccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEee
Q 004456 335 DVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 412 (752)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~ 412 (752)
. ..+.+..++.. .-.++.++||++|+-.+.++ +|..||..+|..-++..
T Consensus 311 ~-~~~~i~GHnK~-------ITaLtv~~d~~~i~SgsyDG---------------------~I~~W~~~~g~~~~~~g 359 (603)
T KOG0318|consen 311 S-VLKVISGHNKS-------ITALTVSPDGKTIYSGSYDG---------------------HINSWDSGSGTSDRLAG 359 (603)
T ss_pred C-hhheecccccc-------eeEEEEcCCCCEEEeeccCc---------------------eEEEEecCCcccccccc
Confidence 2 22223222221 12366899999998887543 69999998888777753
No 134
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.35 E-value=6.5e-11 Score=112.73 Aligned_cols=205 Identities=17% Similarity=0.129 Sum_probs=128.6
Q ss_pred EEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCC
Q 004456 496 TATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN 575 (752)
Q Consensus 496 ~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~ 575 (752)
...++.|.. .+.+|+|||+||.. .....+.....++++.||+|+.++.+...+..
T Consensus 5 ~l~v~~P~~-----~g~yPVv~f~~G~~---------------~~~s~Ys~ll~hvAShGyIVV~~d~~~~~~~~----- 59 (259)
T PF12740_consen 5 PLLVYYPSS-----AGTYPVVLFLHGFL---------------LINSWYSQLLEHVASHGYIVVAPDLYSIGGPD----- 59 (259)
T ss_pred CeEEEecCC-----CCCcCEEEEeCCcC---------------CCHHHHHHHHHHHHhCceEEEEecccccCCCC-----
Confidence 456777876 56699999999952 11122446778999999999996643332211
Q ss_pred chhHHHHHHHHHHHHHHHHHcC--------CCCCCcEEEEEeChHHHHHHHHHHhC-----CCceeEEEEccCCCCCCCC
Q 004456 576 DRFVEQLVSSAEAAVEEVVRRG--------VADPSRIAVGGHSYGAFMTAHLLAHA-----PHLFCCGIARSGSYNKTLT 642 (752)
Q Consensus 576 ~~~~~~~~~d~~~~~~~l~~~~--------~~d~~~i~l~G~S~GG~~a~~~~~~~-----p~~~~~~v~~~~~~~~~~~ 642 (752)
.....+++.++++|+.+.. .+|-+||+|+|||.||-+|..++..+ +.+|+++|++.|+......
T Consensus 60 ---~~~~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG~~~~ 136 (259)
T PF12740_consen 60 ---DTDEVASAAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDGMSKG 136 (259)
T ss_pred ---cchhHHHHHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccccccc
Confidence 2345677778888877631 25888999999999999999999886 4589999999997531111
Q ss_pred ccCccccccchhhhHHHHHhcChhhhcCCCCCCEEEEEeCCCCCC------CCCH--HHHHHHHHHHHhCCCcEEEEEeC
Q 004456 643 PFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKV------GLFP--MQAERFFDALKGHGALSRLVLLP 714 (752)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v------~~~~--~~~~~~~~~l~~~~~~~~~~~~~ 714 (752)
... . + .. ....| ..-+...|+|++-.+-.... +|-+ .+-+++++++ ..+....+.+
T Consensus 137 ~~~---~---P----~v-~~~~p--~s~~~~~P~lviGtGLg~~~~~~~~~~CaP~g~n~~~Ff~~~---~~p~~~~v~~ 200 (259)
T PF12740_consen 137 SQT---E---P----PV-LTYTP--QSFDFSMPALVIGTGLGGEPRNPLFPPCAPAGVNYREFFDEC---KPPSWHFVAK 200 (259)
T ss_pred cCC---C---C----cc-ccCcc--cccCCCCCeEEEecccCcccccccCCCCCCCCCCHHHHHHhc---CCCEEEEEeC
Confidence 000 0 0 00 00000 01123589998877666421 1212 2445677766 3456677778
Q ss_pred CCCccCCcccc------------------------HHHHHHHHHHHHHHHhcCC
Q 004456 715 FEHHVYAAREN------------------------VMHVIWETDRWLQKYCLSN 744 (752)
Q Consensus 715 ~~~H~~~~~~~------------------------~~~~~~~~~~fl~~~l~~~ 744 (752)
+.||+-..... ++.....+++||+.+|.+.
T Consensus 201 ~~GH~d~LDd~~~~~~~~~~~~~~Ck~g~~~~~~~r~f~~g~~vAfl~~~l~g~ 254 (259)
T PF12740_consen 201 DYGHMDFLDDDTPGYVGLCLFRCLCKNGPDDRDPMRRFVGGIMVAFLNAQLQGD 254 (259)
T ss_pred CCCchHhhcCCCcchhHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99995221111 1223346899999999765
No 135
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.34 E-value=1.9e-11 Score=124.17 Aligned_cols=202 Identities=20% Similarity=0.133 Sum_probs=118.5
Q ss_pred CceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHh-CCcEEEecCCCCCCCCC-CCCCCchhHHHHHHHHHHH
Q 004456 512 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPIIGEG-DKLPNDRFVEQLVSSAEAA 589 (752)
Q Consensus 512 ~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~~~~~g~g-~~~~~~~~~~~~~~d~~~~ 589 (752)
..|.||++||.+.+. ..|. .....|.. .|+.|++ .+..|+| .+..+....-.....+...
T Consensus 57 ~~~pvlllHGF~~~~-----------~~w~----~~~~~L~~~~~~~v~a---iDl~G~g~~s~~~~~~~y~~~~~v~~i 118 (326)
T KOG1454|consen 57 DKPPVLLLHGFGASS-----------FSWR----RVVPLLSKAKGLRVLA---IDLPGHGYSSPLPRGPLYTLRELVELI 118 (326)
T ss_pred CCCcEEEeccccCCc-----------ccHh----hhccccccccceEEEE---EecCCCCcCCCCCCCCceehhHHHHHH
Confidence 478999999953211 1122 11222232 3699999 4455555 2222211111212222233
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE---EccCCCCCCC--------------------Cc--c
Q 004456 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI---ARSGSYNKTL--------------------TP--F 644 (752)
Q Consensus 590 ~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v---~~~~~~~~~~--------------------~~--~ 644 (752)
.+.+++... .++.++|||+||.+|+.+|+.+|+.++..| ..++.....- .+ .
T Consensus 119 ~~~~~~~~~---~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 195 (326)
T KOG1454|consen 119 RRFVKEVFV---EPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSL 195 (326)
T ss_pred HHHHHhhcC---cceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCcccc
Confidence 344444332 459999999999999999999999999999 5554321000 00 0
Q ss_pred Cccc----------------cccchhhhHHHH---------------------Hh--cChhhhcCCCC-CCEEEEEeCCC
Q 004456 645 GFQT----------------EFRTLWEATNVY---------------------IE--MSPITHANKIK-KPILIIHGEVD 684 (752)
Q Consensus 645 ~~~~----------------~~~~~~~~~~~~---------------------~~--~~~~~~~~~~~-~P~li~~G~~D 684 (752)
..+. .....++..... .. ......+.++. +|+||++|..|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D 275 (326)
T KOG1454|consen 196 TEPVRLVSEGLLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKD 275 (326)
T ss_pred ccchhheeHhhhcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccccCCceEEEEcCcC
Confidence 0000 000000000000 00 12233455665 99999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHHHHh
Q 004456 685 DKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 741 (752)
Q Consensus 685 ~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 741 (752)
.++| .+.+.++.+.+ .++++++++++||... .+.++.+.+.+..|+..+.
T Consensus 276 ~~~p--~~~~~~~~~~~----pn~~~~~I~~~gH~~h-~e~Pe~~~~~i~~Fi~~~~ 325 (326)
T KOG1454|consen 276 QIVP--LELAEELKKKL----PNAELVEIPGAGHLPH-LERPEEVAALLRSFIARLR 325 (326)
T ss_pred CccC--HHHHHHHHhhC----CCceEEEeCCCCcccc-cCCHHHHHHHHHHHHHHhc
Confidence 9999 77655554443 5679999999999877 4778999999999998763
No 136
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.34 E-value=4.5e-10 Score=102.12 Aligned_cols=269 Identities=10% Similarity=0.044 Sum_probs=174.7
Q ss_pred cCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccch
Q 004456 59 SCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMT 138 (752)
Q Consensus 59 ~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (752)
+++..|.++.+.+|...+-..+++. .|..+...||++.|+....
T Consensus 17 ~YDhTIRfWqa~tG~C~rTiqh~ds----qVNrLeiTpdk~~LAaa~~-------------------------------- 60 (311)
T KOG0315|consen 17 GYDHTIRFWQALTGICSRTIQHPDS----QVNRLEITPDKKDLAAAGN-------------------------------- 60 (311)
T ss_pred cCcceeeeeehhcCeEEEEEecCcc----ceeeEEEcCCcchhhhccC--------------------------------
Confidence 6778999999999997666555542 3667899999999986522
Q ss_pred hhccCChhhhhhhhhhcccEEEEEcc-CCCccccC---Cc-cceeccccCCCCceEEEEecccCccccccccCccccEEE
Q 004456 139 DNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFG---TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQV 213 (752)
Q Consensus 139 ~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~~l~---~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~ 213 (752)
.+|.++|+ +++..++. .+ ..+..+.|--|||+++-.+.+ +.+.+
T Consensus 61 ------------------qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD-------------gt~kI 109 (311)
T KOG0315|consen 61 ------------------QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED-------------GTVKI 109 (311)
T ss_pred ------------------CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC-------------ceEEE
Confidence 57888888 55443332 22 678899999999999776554 37899
Q ss_pred EecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeE
Q 004456 214 WTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI 293 (752)
Q Consensus 214 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 293 (752)
||+..-...++...... +..+...|+... |+... -.+.|.+||+. +......
T Consensus 110 WdlR~~~~qR~~~~~sp-------------Vn~vvlhpnQte-Lis~d------------qsg~irvWDl~--~~~c~~~ 161 (311)
T KOG0315|consen 110 WDLRSLSCQRNYQHNSP-------------VNTVVLHPNQTE-LISGD------------QSGNIRVWDLG--ENSCTHE 161 (311)
T ss_pred EeccCcccchhccCCCC-------------cceEEecCCcce-EEeec------------CCCcEEEEEcc--CCccccc
Confidence 99987655555444322 557888898886 55542 34478999983 2223334
Q ss_pred E-eecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCc--cceeccccccccccCCCCCCceeeCCCCCeEEEe
Q 004456 294 L-HKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDV--APRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAK 370 (752)
Q Consensus 294 l-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~ 370 (752)
+ .+....+.+++..|||+.++... +.+..|++++-+... +.+++.+......+ .-.-..|||+|+|+-.
T Consensus 162 liPe~~~~i~sl~v~~dgsml~a~n----nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~----il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 162 LIPEDDTSIQSLTVMPDGSMLAAAN----NKGNCYVWRLLNHQTASELEPVHKFQAHNGH----ILRCLLSPDVKYLATC 233 (311)
T ss_pred cCCCCCcceeeEEEcCCCcEEEEec----CCccEEEEEccCCCccccceEhhheecccce----EEEEEECCCCcEEEee
Confidence 4 45556788999999999988765 344588888776422 22334443333211 1112379999999998
Q ss_pred eeecCCcceEEEEccCCCCCCCCCCeeEEEecCCC-ceeEEeeccchhhhhceeeeecCCcceecccCCCEEEEEEecCC
Q 004456 371 IKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTG-SKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKT 449 (752)
Q Consensus 371 ~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~ 449 (752)
+.+. .+++|+.++- +.+.......+ . .=.++||.||.+|+-.. +.
T Consensus 234 ssdk---------------------tv~iwn~~~~~kle~~l~gh~r-------W----vWdc~FS~dg~YlvTas-sd- 279 (311)
T KOG0315|consen 234 SSDK---------------------TVKIWNTDDFFKLELVLTGHQR-------W----VWDCAFSADGEYLVTAS-SD- 279 (311)
T ss_pred cCCc---------------------eEEEEecCCceeeEEEeecCCc-------e----EEeeeeccCccEEEecC-CC-
Confidence 8442 4777777654 22322222211 1 11368999999886543 33
Q ss_pred CCcEEEEEECCCCCeeE
Q 004456 450 EITQYHILSWPLKKSSQ 466 (752)
Q Consensus 450 ~~~~i~~~d~~~g~~~~ 466 (752)
.....|++..++..+
T Consensus 280 --~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 280 --HTARLWDLSAGKEVR 294 (311)
T ss_pred --CceeecccccCceee
Confidence 235677888777554
No 137
>KOG3101 consensus Esterase D [General function prediction only]
Probab=99.33 E-value=1.4e-11 Score=109.05 Aligned_cols=213 Identities=18% Similarity=0.231 Sum_probs=138.5
Q ss_pred EEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCC----CCC
Q 004456 494 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI----IGE 569 (752)
Q Consensus 494 ~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~----~g~ 569 (752)
.|..-+|+|+.+..++ +.|++.++-|. ++.+..|..-. .+.+....+|++|+.++.-+. .|.
T Consensus 27 ~Mtf~vylPp~a~~~k--~~P~lf~LSGL-----------TCT~~Nfi~Ks-g~qq~As~hgl~vV~PDTSPRG~~v~g~ 92 (283)
T KOG3101|consen 27 SMTFGVYLPPDAPRGK--RCPVLFYLSGL-----------TCTHENFIEKS-GFQQQASKHGLAVVAPDTSPRGVEVAGD 92 (283)
T ss_pred ceEEEEecCCCcccCC--cCceEEEecCC-----------cccchhhHhhh-hHHHhHhhcCeEEECCCCCCCccccCCC
Confidence 5788899998866544 59999999983 44444443211 123344579999999665321 111
Q ss_pred CCC--------C----CCchhHH--HHHHHHHHHHHHHHH--cCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEc
Q 004456 570 GDK--------L----PNDRFVE--QLVSSAEAAVEEVVR--RGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIAR 633 (752)
Q Consensus 570 g~~--------~----~~~~~~~--~~~~d~~~~~~~l~~--~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~ 633 (752)
.++ + ..+.+-. .++.-+.+-+-.+.. ...+|+.+++|.||||||+-|+..+.++|.+++.+-++
T Consensus 93 ~eswDFG~GAGFYvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAF 172 (283)
T KOG3101|consen 93 DESWDFGQGAGFYVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAF 172 (283)
T ss_pred cccccccCCceeEEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceecc
Confidence 111 0 0111111 222322222222222 23488999999999999999999999999999999999
Q ss_pred cCCCCCCCCccCccccccchhhhHHHHHhcChhhhc---CCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCC-CcEE
Q 004456 634 SGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHA---NKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHG-ALSR 709 (752)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~-~~~~ 709 (752)
+|+.++...+|+........-++...|..+++-..+ .....-+||-+|..|++.+ ...-...+.++..... .++.
T Consensus 173 API~NP~~cpWGqKAf~gYLG~~ka~W~~yDat~lik~y~~~~~~ilIdqG~~D~Fl~-~qLlPe~l~~a~~~~~~~~v~ 251 (283)
T KOG3101|consen 173 APICNPINCPWGQKAFTGYLGDNKAQWEAYDATHLIKNYRGVGDDILIDQGAADNFLA-EQLLPENLLEACKATWQAPVV 251 (283)
T ss_pred ccccCcccCcchHHHhhcccCCChHHHhhcchHHHHHhcCCCCccEEEecCccchhhh-hhcChHHHHHHhhccccccEE
Confidence 999999999998766555555566667666664444 3445669999999998854 0111234555554332 6788
Q ss_pred EEEeCCCCccCC
Q 004456 710 LVLLPFEHHVYA 721 (752)
Q Consensus 710 ~~~~~~~~H~~~ 721 (752)
+...++-.|.+.
T Consensus 252 ~r~~~gyDHSYy 263 (283)
T KOG3101|consen 252 FRLQEGYDHSYY 263 (283)
T ss_pred EEeecCCCccee
Confidence 999999999865
No 138
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.31 E-value=1.3e-10 Score=111.73 Aligned_cols=277 Identities=13% Similarity=0.110 Sum_probs=142.4
Q ss_pred ceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcc--eeccCCCCccccccccceEEe-----cCCcEEEE
Q 004456 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPDICLNAVFGSFVWV-----NNSTLLIF 103 (752)
Q Consensus 31 ~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~--~~lt~~~~~~~~~~~~~~~ws-----pdg~~l~~ 103 (752)
.++--.+|||||++||..+. .+.|.+++.++|+. +.|..+.. -+..++|- |..+.|+-
T Consensus 158 ~WVlcvawsPDgk~iASG~~----------dg~I~lwdpktg~~~g~~l~gH~K-----~It~Lawep~hl~p~~r~las 222 (480)
T KOG0271|consen 158 NWVLCVAWSPDGKKIASGSK----------DGSIRLWDPKTGQQIGRALRGHKK-----WITALAWEPLHLVPPCRRLAS 222 (480)
T ss_pred cEEEEEEECCCcchhhcccc----------CCeEEEecCCCCCcccccccCccc-----ceeEEeecccccCCCccceec
Confidence 38888999999999999643 47889999888764 66654444 34567775 55665554
Q ss_pred EecCCCCCCCCCccCCCCCceeccc-ccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCcc-ccCCc-cceec
Q 004456 104 TIPSSRRDPPKKTMVPLGPKIQSNE-QKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTP-AVYTA 179 (752)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~-~l~~~-~~~~~ 179 (752)
.+.++. ...+....+....... .-..+. .+.|-.++-.........|.+|+. +|... .+..+ -++..
T Consensus 223 ~skDg~---vrIWd~~~~~~~~~lsgHT~~VT------CvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~ 293 (480)
T KOG0271|consen 223 SSKDGS---VRIWDTKLGTCVRTLSGHTASVT------CVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNH 293 (480)
T ss_pred ccCCCC---EEEEEccCceEEEEeccCccceE------EEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheee
Confidence 432211 1122222221111111 000011 111111111111224567778877 77433 33333 44554
Q ss_pred cccC-----------CCCceEEEEeccc------------CccccccccCccccEEEEecC-Cc-eeEEecCCCCCCCCC
Q 004456 180 VEPS-----------PDQKYVLITSMHR------------PYSYKVPCARFSQKVQVWTTD-GK-LVRELCDLPPAEDIP 234 (752)
Q Consensus 180 ~~~S-----------pDGk~l~~~~~~~------------~~~~~~~~~~~~~~l~~~d~~-~~-~~~~l~~~~~~~~~~ 234 (752)
++.| |-|++.--.+... ...+....+.-...+++|+.. ++ ...+++...
T Consensus 294 lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq------ 367 (480)
T KOG0271|consen 294 LALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQ------ 367 (480)
T ss_pred eeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchh------
Confidence 4444 3344311000000 000000011112477888754 22 222333222
Q ss_pred cccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEE
Q 004456 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALV 314 (752)
Q Consensus 235 ~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~ 314 (752)
.-+..+.|||||++ ++-.++. ..+-+|+.. +|+-...+...-+.+.+++||.|.+.|+
T Consensus 368 -------~lVn~V~fSPd~r~-IASaSFD------------kSVkLW~g~--tGk~lasfRGHv~~VYqvawsaDsRLlV 425 (480)
T KOG0271|consen 368 -------ALVNHVSFSPDGRY-IASASFD------------KSVKLWDGR--TGKFLASFRGHVAAVYQVAWSADSRLLV 425 (480)
T ss_pred -------hheeeEEECCCccE-EEEeecc------------cceeeeeCC--CcchhhhhhhccceeEEEEeccCccEEE
Confidence 22567999999998 7777643 256667652 3333333444566788999999999887
Q ss_pred EeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEee
Q 004456 315 NETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (752)
Q Consensus 315 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~ 371 (752)
..+ ....|.++++.+. +...+..... +....+.|||||..++-..
T Consensus 426 S~S----kDsTLKvw~V~tk----Kl~~DLpGh~----DEVf~vDwspDG~rV~sgg 470 (480)
T KOG0271|consen 426 SGS----KDSTLKVWDVRTK----KLKQDLPGHA----DEVFAVDWSPDGQRVASGG 470 (480)
T ss_pred EcC----CCceEEEEEeeee----eecccCCCCC----ceEEEEEecCCCceeecCC
Confidence 766 3345777777652 2222222111 0112266999999876554
No 139
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.9e-09 Score=100.66 Aligned_cols=253 Identities=15% Similarity=0.172 Sum_probs=164.8
Q ss_pred ceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCC
Q 004456 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (752)
Q Consensus 31 ~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~ 110 (752)
..+....||+||..++-.+ ....|.+++...|+........+. ++....|......+++.+.. .
T Consensus 15 ~~i~sl~fs~~G~~litss----------~dDsl~LYd~~~g~~~~ti~skky----G~~~~~Fth~~~~~i~sStk--~ 78 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSS----------EDDSLRLYDSLSGKQVKTINSKKY----GVDLACFTHHSNTVIHSSTK--E 78 (311)
T ss_pred CceeEEEecCCCCEEEEec----------CCCeEEEEEcCCCceeeEeecccc----cccEEEEecCCceEEEccCC--C
Confidence 3688999999999998843 335788889888887666555543 24456777666666665321 0
Q ss_pred CCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCccccCC-c-cceeccccCCCCc
Q 004456 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT-P-AVYTAVEPSPDQK 187 (752)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~~l~~-~-~~~~~~~~SpDGk 187 (752)
...|..+++ +-+..+... + ..+.++..||-+.
T Consensus 79 ---------------------------------------------d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d 113 (311)
T KOG1446|consen 79 ---------------------------------------------DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDD 113 (311)
T ss_pred ---------------------------------------------CCceEEEEeecCceEEEcCCCCceEEEEEecCCCC
Confidence 146777888 555444443 3 7888999999998
Q ss_pred eEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCC
Q 004456 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (752)
Q Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~ 267 (752)
..+-.+.++ .+.+||+...+-.-+...... .-.+++|.| |+|+...
T Consensus 114 ~FlS~S~D~-------------tvrLWDlR~~~cqg~l~~~~~--------------pi~AfDp~G---LifA~~~---- 159 (311)
T KOG1446|consen 114 TFLSSSLDK-------------TVRLWDLRVKKCQGLLNLSGR--------------PIAAFDPEG---LIFALAN---- 159 (311)
T ss_pred eEEecccCC-------------eEEeeEecCCCCceEEecCCC--------------cceeECCCC---cEEEEec----
Confidence 877766664 899999997765555444321 135999999 4455322
Q ss_pred CccccCccceEEeccCCCCCCCCCeEEe---ecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceecccc
Q 004456 268 ANVEVSPRDIIYTQPAEPAEGEKPEILH---KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 344 (752)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~---~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 344 (752)
..+.|.++|+...+.+..+... ....+...+.||||||.|+.++ ..+.++++|.-+| ..+.-...
T Consensus 160 ------~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT----~~s~~~~lDAf~G--~~~~tfs~ 227 (311)
T KOG1446|consen 160 ------GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST----NASFIYLLDAFDG--TVKSTFSG 227 (311)
T ss_pred ------CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe----CCCcEEEEEccCC--cEeeeEee
Confidence 3337788887555444444332 2234567899999999999988 4456899998775 22222211
Q ss_pred ccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeecc
Q 004456 345 VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESN 414 (752)
Q Consensus 345 ~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~ 414 (752)
...... ..-..+++|||+.++..+.+ | +|.+|++++|.....+...
T Consensus 228 ~~~~~~---~~~~a~ftPds~Fvl~gs~d-------------g--------~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 228 YPNAGN---LPLSATFTPDSKFVLSGSDD-------------G--------TIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred ccCCCC---cceeEEECCCCcEEEEecCC-------------C--------cEEEEEcCCCcEeeEecCC
Confidence 111100 01124589999988777632 2 5999999999887776653
No 140
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.30 E-value=4.6e-10 Score=121.03 Aligned_cols=240 Identities=16% Similarity=0.129 Sum_probs=152.8
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCc---ceeccCCCCccccccccceEEecCCcEEEEEecCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE---AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~---~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~ 108 (752)
.+....|||||+.++..+. ...+.+....+++ .+.+.. ....+..+.|||||+.|+-.+.
T Consensus 161 sv~~~~fs~~g~~l~~~~~----------~~~i~~~~~~~~~~~~~~~l~~-----h~~~v~~~~fs~d~~~l~s~s~-- 223 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASS----------DGLIRIWKLEGIKSNLLRELSG-----HTRGVSDVAFSPDGSYLLSGSD-- 223 (456)
T ss_pred ceEEEEEcCCCCeEEEccC----------CCcEEEeecccccchhhccccc-----cccceeeeEECCCCcEEEEecC--
Confidence 4666899999999998643 3455565655555 222211 1225789999999997775432
Q ss_pred CCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CC--CccccCCc-cceeccccCC
Q 004456 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--TAKDFGTP-AVYTAVEPSP 184 (752)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G--~~~~l~~~-~~~~~~~~Sp 184 (752)
..+|+++++ +. ..+.+..+ ..+..++|+|
T Consensus 224 -----------------------------------------------D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p 256 (456)
T KOG0266|consen 224 -----------------------------------------------DKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP 256 (456)
T ss_pred -----------------------------------------------CceEEEeeccCCCeEEEEecCCCCceEEEEecC
Confidence 157888888 43 44555555 8889999999
Q ss_pred CCceEEEEecccCccccccccCccccEEEEecCCceeEE-ecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEec
Q 004456 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (752)
Q Consensus 185 DGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~ 263 (752)
+|+.|+..+.++ .+.+||+.+++... +.... ..+..++|++||.. |+..+
T Consensus 257 ~g~~i~Sgs~D~-------------tvriWd~~~~~~~~~l~~hs-------------~~is~~~f~~d~~~-l~s~s-- 307 (456)
T KOG0266|consen 257 DGNLLVSGSDDG-------------TVRIWDVRTGECVRKLKGHS-------------DGISGLAFSPDGNL-LVSAS-- 307 (456)
T ss_pred CCCEEEEecCCC-------------cEEEEeccCCeEEEeeeccC-------------CceEEEEECCCCCE-EEEcC--
Confidence 997776665553 89999999765443 33332 23678899999996 44332
Q ss_pred cCCCCccccCccceEEeccCCCCCCCCC---eEEeeccc--ceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccc
Q 004456 264 DRGDANVEVSPRDIIYTQPAEPAEGEKP---EILHKLDL--RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAP 338 (752)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~l~~~~~--~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 338 (752)
..+.|.+||+ .++.. ..+..... .+....|||+|++++... ....+.++++..+ ...
T Consensus 308 ----------~d~~i~vwd~---~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~----~d~~~~~w~l~~~-~~~ 369 (456)
T KOG0266|consen 308 ----------YDGTIRVWDL---ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS----LDRTLKLWDLRSG-KSV 369 (456)
T ss_pred ----------CCccEEEEEC---CCCceeeeecccCCCCCCceeEEEECCCCcEEEEec----CCCeEEEEEccCC-cce
Confidence 4568999998 44452 23433333 378889999999999877 2234666676653 222
Q ss_pred eeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCce
Q 004456 339 RVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSK 407 (752)
Q Consensus 339 ~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~ 407 (752)
.......... . .......+++|++++....+. .|++||+.++..
T Consensus 370 ~~~~~~~~~~-~---~~~~~~~~~~~~~i~sg~~d~---------------------~v~~~~~~s~~~ 413 (456)
T KOG0266|consen 370 GTYTGHSNLV-R---CIFSPTLSTGGKLIYSGSEDG---------------------SVYVWDSSSGGI 413 (456)
T ss_pred eeecccCCcc-e---eEecccccCCCCeEEEEeCCc---------------------eEEEEeCCccch
Confidence 2222222210 0 111122378888887776332 489999987654
No 141
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=99.30 E-value=3.2e-11 Score=108.78 Aligned_cols=164 Identities=21% Similarity=0.284 Sum_probs=120.5
Q ss_pred hHHHHHhCCcEEEecCCCCCCCCCCCCCC---chh-----HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH
Q 004456 547 SSLIFLARRFAVLAGPSIPIIGEGDKLPN---DRF-----VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAH 618 (752)
Q Consensus 547 ~~~~l~~~G~~v~~~~~~~~~g~g~~~~~---~~~-----~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~ 618 (752)
.+..++..||.|+++|.+.+--+.-+... ..+ .....+++...++||+.++ +..+|+++|+||||.++..
T Consensus 59 ~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~vv~ 136 (242)
T KOG3043|consen 59 GADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKVVVT 136 (242)
T ss_pred HHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcC--CcceeeEEEEeecceEEEE
Confidence 46677889999999776543222111000 111 2234688999999999665 4579999999999999998
Q ss_pred HHHhCCCceeEEEEccCCCCCCCCccCccccccchhhhHHHHHhcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHH
Q 004456 619 LLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFF 698 (752)
Q Consensus 619 ~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~ 698 (752)
+....| .|.++++..|..- + ...+.++++|+|++.++.|..+| +....++-
T Consensus 137 ~~~~~~-~f~a~v~~hps~~-------------------------d-~~D~~~vk~Pilfl~ae~D~~~p--~~~v~~~e 187 (242)
T KOG3043|consen 137 LSAKDP-EFDAGVSFHPSFV-------------------------D-SADIANVKAPILFLFAELDEDVP--PKDVKAWE 187 (242)
T ss_pred eeccch-hheeeeEecCCcC-------------------------C-hhHHhcCCCCEEEEeecccccCC--HHHHHHHH
Confidence 888876 7889888887421 1 12356678999999999999998 88888888
Q ss_pred HHHHhCCC-cEEEEEeCCCCccCCcc----------ccHHHHHHHHHHHHHHHh
Q 004456 699 DALKGHGA-LSRLVLLPFEHHVYAAR----------ENVMHVIWETDRWLQKYC 741 (752)
Q Consensus 699 ~~l~~~~~-~~~~~~~~~~~H~~~~~----------~~~~~~~~~~~~fl~~~l 741 (752)
+++.+... ..++.+|++.+|++... ...++.++.++.||.++|
T Consensus 188 e~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~~y~ 241 (242)
T KOG3043|consen 188 EKLKENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWFKHYL 241 (242)
T ss_pred HHHhcCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHHHHhh
Confidence 88876532 35799999999998631 123567888999999987
No 142
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=99.30 E-value=1.5e-09 Score=116.69 Aligned_cols=277 Identities=12% Similarity=0.048 Sum_probs=162.3
Q ss_pred cceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCc
Q 004456 90 GSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA 168 (752)
Q Consensus 90 ~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~ 168 (752)
..+.+||||++|+|+...+..+ ...|+++|+ +|+.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e--------------------------------------------~~~l~v~Dl~tg~~ 162 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSE--------------------------------------------WYTLRVFDLETGKF 162 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSS--------------------------------------------EEEEEEEETTTTEE
T ss_pred eeeeECCCCCEEEEEecCCCCc--------------------------------------------eEEEEEEECCCCcC
Confidence 3678999999999986543332 268999999 7733
Q ss_pred cc-cCCccceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeE--EecCCCCCCCCCcccCCcccccc
Q 004456 169 KD-FGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR--ELCDLPPAEDIPVCYNSVREGMR 245 (752)
Q Consensus 169 ~~-l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~ 245 (752)
.. .........+.|++||+.++|+......... ...++.+++.+++.+.... .+...+.... ..-
T Consensus 163 l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~--~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~----------~~~ 230 (414)
T PF02897_consen 163 LPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTS--DSGYPRQVYRHKLGTPQSEDELVFEEPDEPF----------WFV 230 (414)
T ss_dssp EEEEEEEEESEEEEECTTSSEEEEEECSTTTSS---CCGCCEEEEEEETTS-GGG-EEEEC-TTCTT----------SEE
T ss_pred cCCcccccccceEEEeCCCCEEEEEEeCcccccc--cCCCCcEEEEEECCCChHhCeeEEeecCCCc----------EEE
Confidence 21 1112233349999999999999877532100 2334678999999876443 4444432211 022
Q ss_pred ceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCC--CCCCCeEEeecccce-eeeeeecCCceEEEeeecccC
Q 004456 246 SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPA--EGEKPEILHKLDLRF-RSVSWCDDSLALVNETWYKTS 322 (752)
Q Consensus 246 ~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~l~~~~~~~-~~~~~spDg~~l~~~~~~~~~ 322 (752)
.+..|+||++ |++.+... .....++++++... .....+.+....... ..+... |..+++.++....
T Consensus 231 ~~~~s~d~~~-l~i~~~~~--------~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~ 299 (414)
T PF02897_consen 231 SVSRSKDGRY-LFISSSSG--------TSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAP 299 (414)
T ss_dssp EEEE-TTSSE-EEEEEESS--------SSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-T
T ss_pred EEEecCcccE-EEEEEEcc--------ccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCC
Confidence 5788999997 55443221 11257899998311 012455665533333 333333 7777787777667
Q ss_pred ceeEEEEcCCCCCc-cce-eccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEE
Q 004456 323 QTRTWLVCPGSKDV-APR-VLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLF 400 (752)
Q Consensus 323 ~~~l~~~~~~~~~~-~~~-~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~ 400 (752)
+.+|+.++++.... ... .+.+..... ..-.++..+++|++.... ....+|.++
T Consensus 300 ~~~l~~~~l~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~~~Lvl~~~~------------------~~~~~l~v~ 354 (414)
T PF02897_consen 300 NGRLVAVDLADPSPAEWWTVLIPEDEDV-------SLEDVSLFKDYLVLSYRE------------------NGSSRLRVY 354 (414)
T ss_dssp T-EEEEEETTSTSGGGEEEEEE--SSSE-------EEEEEEEETTEEEEEEEE------------------TTEEEEEEE
T ss_pred CcEEEEecccccccccceeEEcCCCCce-------eEEEEEEECCEEEEEEEE------------------CCccEEEEE
Confidence 78999999988531 112 222222110 001245566667666533 334579999
Q ss_pred ecC-CCceeEEeeccchhhhhceeeeecCCcceecccCCCEEEEEEecCCCCcEEEEEECCCCCeeEeec
Q 004456 401 DIN-TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITN 469 (752)
Q Consensus 401 d~~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~~g~~~~lt~ 469 (752)
++. +.....+...... .+.. .+..++++.+.|..++...|+.+|.+|+.+++.++++.
T Consensus 355 ~~~~~~~~~~~~~p~~g----~v~~-------~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k~ 413 (414)
T PF02897_consen 355 DLDDGKESREIPLPEAG----SVSG-------VSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLKQ 413 (414)
T ss_dssp ETT-TEEEEEEESSSSS----EEEE-------EES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEEE
T ss_pred ECCCCcEEeeecCCcce----EEec-------cCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEEe
Confidence 998 4444444322211 1111 34567899999999999999999999999999998864
No 143
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.29 E-value=3.4e-09 Score=110.26 Aligned_cols=223 Identities=9% Similarity=-0.022 Sum_probs=114.5
Q ss_pred cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCce-e-EEecCCCCCCCCCcccCCccccccceeeeeC
Q 004456 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-V-RELCDLPPAEDIPVCYNSVREGMRSISWRAD 252 (752)
Q Consensus 175 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspD 252 (752)
+....+.++|||++|+...... +.+.+|+++... . ..+...+. ..++..+.++||
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~------------~~v~v~~~~~~g~~~~~~~~~~~-----------~~~~~~~~~~p~ 136 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNA------------NCVSVSPLDKDGIPVAPIQIIEG-----------LEGCHSANIDPD 136 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCC------------CeEEEEEECCCCCCCCceeeccC-----------CCcccEeEeCCC
Confidence 4556899999999998876442 467788775221 1 11111110 012456789999
Q ss_pred CCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCe-----EEe-ecccceeeeeeecCCceEEEeeecccCceeE
Q 004456 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-----ILH-KLDLRFRSVSWCDDSLALVNETWYKTSQTRT 326 (752)
Q Consensus 253 G~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~l~-~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l 326 (752)
|+. ++.... ..+.|.++++.. .+... .+. ........++|+|||+.++.... ..+ .|
T Consensus 137 g~~-l~v~~~-----------~~~~v~v~d~~~--~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~-~~~--~v 199 (330)
T PRK11028 137 NRT-LWVPCL-----------KEDRIRLFTLSD--DGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE-LNS--SV 199 (330)
T ss_pred CCE-EEEeeC-----------CCCEEEEEEECC--CCcccccCCCceecCCCCCCceEEECCCCCEEEEEec-CCC--EE
Confidence 997 555531 345788888731 12221 111 12233567899999998777642 223 45
Q ss_pred EEEcCCCCCccceecccccc-ccccCCCCCC-ceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCC
Q 004456 327 WLVCPGSKDVAPRVLFDRVF-ENVYSDPGSP-MMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINT 404 (752)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~p-~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~ 404 (752)
.+++++...++.+.+..... ......+..+ .+.++|||++|+..... ...|.+++++.
T Consensus 200 ~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~--------------------~~~I~v~~i~~ 259 (330)
T PRK11028 200 DVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT--------------------ASLISVFSVSE 259 (330)
T ss_pred EEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC--------------------CCeEEEEEEeC
Confidence 55555421122111111110 0000000111 25579999988876421 12466666543
Q ss_pred --CceeEEeeccchhhhhceeeeecCCcceecccCCCEEEEEEecCCCCcEEEEEECCCCCeeEee
Q 004456 405 --GSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQIT 468 (752)
Q Consensus 405 --g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~~g~~~~lt 468 (752)
+..+.+-.... ......+.++|||++|+......+ .=.+|.+|..+|..+.+.
T Consensus 260 ~~~~~~~~~~~~~----------~~~p~~~~~~~dg~~l~va~~~~~-~v~v~~~~~~~g~l~~~~ 314 (330)
T PRK11028 260 DGSVLSFEGHQPT----------ETQPRGFNIDHSGKYLIAAGQKSH-HISVYEIDGETGLLTELG 314 (330)
T ss_pred CCCeEEEeEEEec----------cccCCceEECCCCCEEEEEEccCC-cEEEEEEcCCCCcEEEcc
Confidence 22222211110 011234589999999988654332 333555565666665543
No 144
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.28 E-value=8e-10 Score=101.25 Aligned_cols=270 Identities=13% Similarity=0.145 Sum_probs=162.6
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (752)
.+....|+-||.++|-.+. ...+-+++++.. +.++..........+..+.|+|...-++++..
T Consensus 22 ~v~Sv~wn~~g~~lasgs~----------dktv~v~n~e~~--r~~~~~~~~gh~~svdql~w~~~~~d~~atas----- 84 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSF----------DKTVSVWNLERD--RFRKELVYRGHTDSVDQLCWDPKHPDLFATAS----- 84 (313)
T ss_pred cceEEEEcccCceeeeccc----------CCceEEEEecch--hhhhhhcccCCCcchhhheeCCCCCcceEEec-----
Confidence 5778999999999998643 244455555555 33332233333335678899988766666532
Q ss_pred CCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCccccCCc-cceeccccCCCCceE
Q 004456 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYV 189 (752)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l 189 (752)
....|.+||. .|+....+.. ++-..+.|||||+++
T Consensus 85 -------------------------------------------~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~ 121 (313)
T KOG1407|consen 85 -------------------------------------------GDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYI 121 (313)
T ss_pred -------------------------------------------CCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEE
Confidence 1146888888 7765555444 777789999999999
Q ss_pred EEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCc
Q 004456 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (752)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~ 269 (752)
++...+. .|...|....+...-.... ....++.|+-++. ++|+..
T Consensus 122 ~~~~kdD-------------~it~id~r~~~~~~~~~~~-------------~e~ne~~w~~~nd--~Fflt~------- 166 (313)
T KOG1407|consen 122 AVGNKDD-------------RITFIDARTYKIVNEEQFK-------------FEVNEISWNNSND--LFFLTN------- 166 (313)
T ss_pred EEecCcc-------------cEEEEEecccceeehhccc-------------ceeeeeeecCCCC--EEEEec-------
Confidence 9986664 4566666544332221111 1144678886665 777642
Q ss_pred cccCccceEEeccCCCCCC-CCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceecc--cccc
Q 004456 270 VEVSPRDIIYTQPAEPAEG-EKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF--DRVF 346 (752)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~--~~~~ 346 (752)
+.+.+-++.- .. ...+.|.........+.|+|+|++++.++.+. -+-++|++.- .=.+.++ +...
T Consensus 167 ----GlG~v~ILsy---psLkpv~si~AH~snCicI~f~p~GryfA~GsADA----lvSLWD~~EL-iC~R~isRldwpV 234 (313)
T KOG1407|consen 167 ----GLGCVEILSY---PSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADA----LVSLWDVDEL-ICERCISRLDWPV 234 (313)
T ss_pred ----CCceEEEEec---cccccccccccCCcceEEEEECCCCceEeeccccc----eeeccChhHh-hhheeeccccCce
Confidence 2233334332 11 22334555566677889999999999987322 2445555432 0012222 2222
Q ss_pred ccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeeccchhhhhceeeee
Q 004456 347 ENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALV 426 (752)
Q Consensus 347 ~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~ 426 (752)
. .++||-||++||..+.+- .|-+-+++||.. +|...-.
T Consensus 235 R---------TlSFS~dg~~lASaSEDh---------------------~IDIA~vetGd~--~~eI~~~---------- 272 (313)
T KOG1407|consen 235 R---------TLSFSHDGRMLASASEDH---------------------FIDIAEVETGDR--VWEIPCE---------- 272 (313)
T ss_pred E---------EEEeccCcceeeccCccc---------------------eEEeEecccCCe--EEEeecc----------
Confidence 2 267899999999987431 466667777753 3332211
Q ss_pred cCCcceecccCCCEEEEEEecCCC
Q 004456 427 FGQGEEDINLNQLKILTSKESKTE 450 (752)
Q Consensus 427 ~~~~~~~~s~d~~~l~~~~~~~~~ 450 (752)
+....++|-|....|+|.......
T Consensus 273 ~~t~tVAWHPk~~LLAyA~ddk~~ 296 (313)
T KOG1407|consen 273 GPTFTVAWHPKRPLLAYACDDKDG 296 (313)
T ss_pred CCceeEEecCCCceeeEEecCCCC
Confidence 223346899999999998866543
No 145
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=99.27 E-value=1.3e-10 Score=121.97 Aligned_cols=143 Identities=21% Similarity=0.290 Sum_probs=106.4
Q ss_pred CCCceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhH--HHHHhCC
Q 004456 478 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSS--LIFLARR 555 (752)
Q Consensus 478 ~~~~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~G 555 (752)
..+....+.++..||.+|.+.+|+|++ .++.|+++..+=.|.+... ..+........ ..++.+|
T Consensus 15 ~~~~~~~v~V~MRDGvrL~~dIy~Pa~-----~g~~Pvll~~~~~Py~k~~---------~~~~~~~~~~p~~~~~aa~G 80 (563)
T COG2936 15 AGYIERDVMVPMRDGVRLAADIYRPAG-----AGPLPVLLSRTRLPYRKRN---------GTFGPQLSALPQPAWFAAQG 80 (563)
T ss_pred cceeeeeeeEEecCCeEEEEEEEccCC-----CCCCceeEEeecccccccc---------ccCcchhhcccccceeecCc
Confidence 336677788888999999999999987 3569999998833322110 00111110111 2578999
Q ss_pred cEEEecCCCCCCCCCCCCCCchh-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEcc
Q 004456 556 FAVLAGPSIPIIGEGDKLPNDRF-VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARS 634 (752)
Q Consensus 556 ~~v~~~~~~~~~g~g~~~~~~~~-~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~ 634 (752)
|+|+. -+.+|.+.+...... ..++.+|-.++|+||.++++.+ .+|+.+|.|++|+..+++|+.+|..+|+++..+
T Consensus 81 YavV~---qDvRG~~~SeG~~~~~~~~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~ 156 (563)
T COG2936 81 YAVVN---QDVRGRGGSEGVFDPESSREAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTE 156 (563)
T ss_pred eEEEE---ecccccccCCcccceeccccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeecccc
Confidence 99999 556677766554332 2358899999999999999865 689999999999999999999988899999988
Q ss_pred CCCC
Q 004456 635 GSYN 638 (752)
Q Consensus 635 ~~~~ 638 (752)
+..|
T Consensus 157 ~~~D 160 (563)
T COG2936 157 GLVD 160 (563)
T ss_pred cccc
Confidence 7755
No 146
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.25 E-value=2.2e-09 Score=106.35 Aligned_cols=278 Identities=14% Similarity=0.130 Sum_probs=176.2
Q ss_pred CCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEec
Q 004456 27 YPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (752)
Q Consensus 27 ~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~ 106 (752)
.+....+....|+-||..||+. ...+.+.+++.+|+...-|-++.+ .+..+.|+-+|.+|+-...
T Consensus 232 ~~~nkdVT~L~Wn~~G~~LatG----------~~~G~~riw~~~G~l~~tl~~Hkg-----PI~slKWnk~G~yilS~~v 296 (524)
T KOG0273|consen 232 VPSNKDVTSLDWNNDGTLLATG----------SEDGEARIWNKDGNLISTLGQHKG-----PIFSLKWNKKGTYILSGGV 296 (524)
T ss_pred CCccCCcceEEecCCCCeEEEe----------ecCcEEEEEecCchhhhhhhccCC-----ceEEEEEcCCCCEEEeccC
Confidence 3444568899999999999996 455788888988888887866654 5778999999999986522
Q ss_pred CCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCccccCCc--cceeccccC
Q 004456 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP--AVYTAVEPS 183 (752)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~~l~~~--~~~~~~~~S 183 (752)
...+.+||. +|+..+.... .....+.|-
T Consensus 297 -------------------------------------------------D~ttilwd~~~g~~~q~f~~~s~~~lDVdW~ 327 (524)
T KOG0273|consen 297 -------------------------------------------------DGTTILWDAHTGTVKQQFEFHSAPALDVDWQ 327 (524)
T ss_pred -------------------------------------------------CccEEEEeccCceEEEeeeeccCCccceEEe
Confidence 156788888 8866655444 333456665
Q ss_pred CCCceEEEEecccCccccccccCccccEEEEecCCceeE-EecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEe
Q 004456 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (752)
Q Consensus 184 pDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~ 262 (752)
-+-++. ..+.+ ..|+++.++.+.+. .+... ...+..+.|.|.|+- |+-++
T Consensus 328 ~~~~F~-ts~td-------------~~i~V~kv~~~~P~~t~~GH-------------~g~V~alk~n~tg~L-LaS~S- 378 (524)
T KOG0273|consen 328 SNDEFA-TSSTD-------------GCIHVCKVGEDRPVKTFIGH-------------HGEVNALKWNPTGSL-LASCS- 378 (524)
T ss_pred cCceEe-ecCCC-------------ceEEEEEecCCCcceeeecc-------------cCceEEEEECCCCce-EEEec-
Confidence 444332 21111 35778777655332 22222 233778999999994 44332
Q ss_pred ccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCce---------EEEeeecccCceeEEEEcCCC
Q 004456 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLA---------LVNETWYKTSQTRTWLVCPGS 333 (752)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~---------l~~~~~~~~~~~~l~~~~~~~ 333 (752)
....+-+|... .+.....|......+..+.|||+|.. ++..+ -.+.+..+|+..
T Consensus 379 -----------dD~TlkiWs~~--~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas----~dstV~lwdv~~ 441 (524)
T KOG0273|consen 379 -----------DDGTLKIWSMG--QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS----FDSTVKLWDVES 441 (524)
T ss_pred -----------CCCeeEeeecC--CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee----cCCeEEEEEccC
Confidence 33356666652 23445556666667778889998653 22222 334577777777
Q ss_pred CCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeec
Q 004456 334 KDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 413 (752)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~ 413 (752)
+ .+..........+++ +++||+|+|+|..+.+. .|.+|+..+++.-+-..+
T Consensus 442 g--v~i~~f~kH~~pVys------vafS~~g~ylAsGs~dg---------------------~V~iws~~~~~l~~s~~~ 492 (524)
T KOG0273|consen 442 G--VPIHTLMKHQEPVYS------VAFSPNGRYLASGSLDG---------------------CVHIWSTKTGKLVKSYQG 492 (524)
T ss_pred C--ceeEeeccCCCceEE------EEecCCCcEEEecCCCC---------------------eeEeccccchheeEeecC
Confidence 4 333322222222333 77999999999987442 488999988876444333
Q ss_pred cchhhhhceeeeecCCcceecccCCCEEEEEEecCCCCcEEEEEEC
Q 004456 414 NREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSW 459 (752)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~ 459 (752)
+.. ...+.|+.+|.+|...++... +.++|+
T Consensus 493 ~~~------------Ifel~Wn~~G~kl~~~~sd~~----vcvldl 522 (524)
T KOG0273|consen 493 TGG------------IFELCWNAAGDKLGACASDGS----VCVLDL 522 (524)
T ss_pred CCe------------EEEEEEcCCCCEEEEEecCCC----ceEEEe
Confidence 321 224689999998877764433 555553
No 147
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=5.1e-10 Score=110.48 Aligned_cols=261 Identities=13% Similarity=0.087 Sum_probs=163.0
Q ss_pred cceeEEeecCCCCCCCCceeecCCC-CCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCC
Q 004456 4 FTGIGIHRLLPDDSLGPEKEVHGYP-DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (752)
Q Consensus 4 ~~~i~~~~~~~~~~~g~~~~i~~~~-~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~ 82 (752)
...+.++.+++ ..-..|+++- ...-+....|+|+|+..+|++ ....-+|.+|+.+.+..++-...+
T Consensus 234 d~~lrifqvDG----k~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s---------~rrky~ysyDle~ak~~k~~~~~g 300 (514)
T KOG2055|consen 234 DGTLRIFQVDG----KVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTS---------GRRKYLYSYDLETAKVTKLKPPYG 300 (514)
T ss_pred CCcEEEEEecC----ccChhheeeeeccCccceeeecCCCceEEEec---------ccceEEEEeeccccccccccCCCC
Confidence 34566677766 4444555422 122477789999999666654 334689999999988777754433
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEE
Q 004456 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (752)
Q Consensus 83 ~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~ 162 (752)
.. ...+..|..|||++.|++... .+.|+++
T Consensus 301 ~e-~~~~e~FeVShd~~fia~~G~-------------------------------------------------~G~I~lL 330 (514)
T KOG2055|consen 301 VE-EKSMERFEVSHDSNFIAIAGN-------------------------------------------------NGHIHLL 330 (514)
T ss_pred cc-cchhheeEecCCCCeEEEccc-------------------------------------------------CceEEee
Confidence 22 224668899999999998632 1678888
Q ss_pred cc-CCCc-cccCCccceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCc
Q 004456 163 SL-DGTA-KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (752)
Q Consensus 163 ~~-~G~~-~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (752)
.. +++. ..+...+.+..+.||.|||.|+..... +++|+||+............+.
T Consensus 331 hakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~-------------GeV~v~nl~~~~~~~rf~D~G~---------- 387 (514)
T KOG2055|consen 331 HAKTKELITSFKIEGVVSDFTFSSDSKELLASGGT-------------GEVYVWNLRQNSCLHRFVDDGS---------- 387 (514)
T ss_pred hhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC-------------ceEEEEecCCcceEEEEeecCc----------
Confidence 77 5543 233334889999999999999887555 3899999987755444333322
Q ss_pred cccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCC-CCCCCCCeEEe---ecccceeeeeeecCCceEEEe
Q 004456 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAE-PAEGEKPEILH---KLDLRFRSVSWCDDSLALVNE 316 (752)
Q Consensus 241 ~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l~---~~~~~~~~~~~spDg~~l~~~ 316 (752)
..-..+.-|++|.+ |+.-+ ..+.+=++|.. -..+..++.+. .....+.+++|+||++.|+..
T Consensus 388 -v~gts~~~S~ng~y-lA~GS------------~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAia 453 (514)
T KOG2055|consen 388 -VHGTSLCISLNGSY-LATGS------------DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIA 453 (514)
T ss_pred -cceeeeeecCCCce-EEecc------------CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhh
Confidence 11235778899986 44432 33344444431 11334555544 445568899999999999988
Q ss_pred eecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEee
Q 004456 317 TWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (752)
Q Consensus 317 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~ 371 (752)
+.... ..+.++.+.+. ....-++..-.. .. ..-.++|||.|-+|++..
T Consensus 454 S~~~k--nalrLVHvPS~--TVFsNfP~~n~~-vg--~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 454 SRVKK--NALRLVHVPSC--TVFSNFPTSNTK-VG--HVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred hhccc--cceEEEeccce--eeeccCCCCCCc-cc--ceEEEEecCCCceEEeec
Confidence 74432 35667776653 111111111000 00 011366899999999986
No 148
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=3.1e-08 Score=95.96 Aligned_cols=255 Identities=11% Similarity=0.039 Sum_probs=141.1
Q ss_pred cEEEEEcc-CCCccccCCc----cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCC-ceeEEec-CCCC
Q 004456 157 AQLVLGSL-DGTAKDFGTP----AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELC-DLPP 229 (752)
Q Consensus 157 ~~i~~~~~-~G~~~~l~~~----~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l~-~~~~ 229 (752)
-.-|.+|. +|..+.+... ....-++.++||++|+...... +.+.++.++. +...... ....
T Consensus 66 vaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~------------g~v~v~p~~~dG~l~~~v~~~~h 133 (346)
T COG2706 66 VAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHS------------GSVSVYPLQADGSLQPVVQVVKH 133 (346)
T ss_pred EEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccC------------ceEEEEEcccCCccccceeeeec
Confidence 34566776 5766555332 3336789999999998887664 3555555532 2111110 0000
Q ss_pred CCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeE----Eeecccceeeee
Q 004456 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI----LHKLDLRFRSVS 305 (752)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----l~~~~~~~~~~~ 305 (752)
....|. ..-...-.....+.|||++ |+... . +.+++++++++ +|. ... ........+.+.
T Consensus 134 ~g~~p~-~rQ~~~h~H~a~~tP~~~~-l~v~D-L----------G~Dri~~y~~~--dg~-L~~~~~~~v~~G~GPRHi~ 197 (346)
T COG2706 134 TGSGPH-ERQESPHVHSANFTPDGRY-LVVPD-L----------GTDRIFLYDLD--DGK-LTPADPAEVKPGAGPRHIV 197 (346)
T ss_pred CCCCCC-ccccCCccceeeeCCCCCE-EEEee-c----------CCceEEEEEcc--cCc-cccccccccCCCCCcceEE
Confidence 001111 0000011345789999996 55553 1 45678888874 222 221 123444567899
Q ss_pred eecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEcc
Q 004456 306 WCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNG 385 (752)
Q Consensus 306 ~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 385 (752)
|+|+++..+... .-++.-.+|.++...++.+..+...--..+.......-.+.-|+||++|+.+...
T Consensus 198 FHpn~k~aY~v~-EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg------------ 264 (346)
T COG2706 198 FHPNGKYAYLVN-ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRG------------ 264 (346)
T ss_pred EcCCCcEEEEEe-ccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCC------------
Confidence 999999655554 4445567788887653222222111111110001122335679999988877633
Q ss_pred CCCCCCCCCCeeEEEecCCCceeEEeeccchhhhhceeeeecC-CcceecccCCCEEEEEEecCCCCcEEEEEECCCCCe
Q 004456 386 RGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFG-QGEEDINLNQLKILTSKESKTEITQYHILSWPLKKS 464 (752)
Q Consensus 386 ~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~~g~~ 464 (752)
-+.-.++.+|..+|++..+...... +. ...+.++++|+.|+....... .-.+|.+|..+|+.
T Consensus 265 ------~dsI~~f~V~~~~g~L~~~~~~~te----------g~~PR~F~i~~~g~~Liaa~q~sd-~i~vf~~d~~TG~L 327 (346)
T COG2706 265 ------HDSIAVFSVDPDGGKLELVGITPTE----------GQFPRDFNINPSGRFLIAANQKSD-NITVFERDKETGRL 327 (346)
T ss_pred ------CCeEEEEEEcCCCCEEEEEEEeccC----------CcCCccceeCCCCCEEEEEccCCC-cEEEEEEcCCCceE
Confidence 1233577888888876655222111 11 224688999999887665444 35689999999998
Q ss_pred eEeec
Q 004456 465 SQITN 469 (752)
Q Consensus 465 ~~lt~ 469 (752)
..+..
T Consensus 328 ~~~~~ 332 (346)
T COG2706 328 TLLGR 332 (346)
T ss_pred Eeccc
Confidence 87654
No 149
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=99.24 E-value=1.2e-10 Score=102.90 Aligned_cols=200 Identities=16% Similarity=0.149 Sum_probs=135.0
Q ss_pred CceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEE
Q 004456 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (752)
Q Consensus 480 ~~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (752)
+.+|.+.|-. +| .-...+|.|.+. .|+.||+|||.|..+.....+ ..+.-+..+||+|.
T Consensus 43 ~r~e~l~Yg~-~g-~q~VDIwg~~~~-------~klfIfIHGGYW~~g~rk~cl------------siv~~a~~~gY~va 101 (270)
T KOG4627|consen 43 IRVEHLRYGE-GG-RQLVDIWGSTNQ-------AKLFIFIHGGYWQEGDRKMCL------------SIVGPAVRRGYRVA 101 (270)
T ss_pred cchhccccCC-CC-ceEEEEecCCCC-------ccEEEEEecchhhcCchhccc------------chhhhhhhcCeEEE
Confidence 4566677642 33 566778887551 589999999988755433211 22445578999999
Q ss_pred ecCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCceeEEEEccCCCC
Q 004456 560 AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-PHLFCCGIARSGSYN 638 (752)
Q Consensus 560 ~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~-p~~~~~~v~~~~~~~ 638 (752)
.+.| +-. .....+++.+.++...++|+.+.-. ..+++.+.|||.|+++++.+..+. ..++.+++++||+++
T Consensus 102 svgY------~l~-~q~htL~qt~~~~~~gv~filk~~~-n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~ 173 (270)
T KOG4627|consen 102 SVGY------NLC-PQVHTLEQTMTQFTHGVNFILKYTE-NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYD 173 (270)
T ss_pred Eecc------CcC-cccccHHHHHHHHHHHHHHHHHhcc-cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhh
Confidence 8443 222 3334678889999999999988632 345799999999999999988754 347999999999887
Q ss_pred CCC---CccCccccccchhhhHHHHHhcCh-hhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeC
Q 004456 639 KTL---TPFGFQTEFRTLWEATNVYIEMSP-ITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLP 714 (752)
Q Consensus 639 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~ 714 (752)
+.- ...+-. .. -..+.....|+ +..+..++.|+|++.+++|.--- ++|.+.+...+++. .+..|+
T Consensus 174 l~EL~~te~g~d--lg---Lt~~~ae~~Scdl~~~~~v~~~ilVv~~~~espkl--ieQnrdf~~q~~~a----~~~~f~ 242 (270)
T KOG4627|consen 174 LRELSNTESGND--LG---LTERNAESVSCDLWEYTDVTVWILVVAAEHESPKL--IEQNRDFADQLRKA----SFTLFK 242 (270)
T ss_pred HHHHhCCccccc--cC---cccchhhhcCccHHHhcCceeeeeEeeecccCcHH--HHhhhhHHHHhhhc----ceeecC
Confidence 321 111100 00 00011111222 22356678999999999986543 78999999888774 788999
Q ss_pred CCCcc
Q 004456 715 FEHHV 719 (752)
Q Consensus 715 ~~~H~ 719 (752)
+.+|.
T Consensus 243 n~~hy 247 (270)
T KOG4627|consen 243 NYDHY 247 (270)
T ss_pred Ccchh
Confidence 98895
No 150
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=99.23 E-value=1.9e-11 Score=121.92 Aligned_cols=218 Identities=22% Similarity=0.287 Sum_probs=121.3
Q ss_pred CcEEEEEEEeCCCCCCCCCCCceEEEEECCC-CCcCcccCCcccCCCCccCCCCchhHHHHHhCC----cEEEecCCCCC
Q 004456 492 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPE-DYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR----FAVLAGPSIPI 566 (752)
Q Consensus 492 g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G----~~v~~~~~~~~ 566 (752)
|..+..++|+|+++.+ ..++|+|+++||. .+. ...........+++.| ..++.++..+.
T Consensus 5 g~~~~~~VylP~~y~~--~~~~PvlylldG~~~~~--------------~~~~~~~~~~~~~~~~~~~~~iiV~i~~~~~ 68 (251)
T PF00756_consen 5 GRDRRVWVYLPPGYDP--SKPYPVLYLLDGQSGWF--------------RNGNAQEALDRLIAEGKIPPMIIVVIPNGDN 68 (251)
T ss_dssp TEEEEEEEEECTTGGT--TTTEEEEEEESHTTHHH--------------HHHHHHHHHHHHHHHHTSEEEEEEEEESSST
T ss_pred CCeEEEEEEECCCCCC--CCCCEEEEEccCCcccc--------------ccchHHHHHHHHHHhCCCCceEEEEEecccc
Confidence 5688999999999844 3469999999992 110 0000001222334443 33444333222
Q ss_pred C-CCC---------CCCCCchhHHHHHHHH-HHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccC
Q 004456 567 I-GEG---------DKLPNDRFVEQLVSSA-EAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635 (752)
Q Consensus 567 ~-g~g---------~~~~~~~~~~~~~~d~-~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~ 635 (752)
. .++ ...............+ .+++.++.++-.++..+.+|+|+||||+.|+.++.++|+.|.++++++|
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~ 148 (251)
T PF00756_consen 69 SRFYTSWYLPAGSSRRADDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSG 148 (251)
T ss_dssp SSTTSBTTSSBCTTCBCTSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESE
T ss_pred cccccccccccccccccccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCc
Confidence 1 000 0001111111111222 2566777777666666699999999999999999999999999999999
Q ss_pred CCCCCCCccCccccccchhhhHHHHHhcChhhh-----cCCCCCCEEEEEeCCCCCCCC--------CHHHHHHHHHHHH
Q 004456 636 SYNKTLTPFGFQTEFRTLWEATNVYIEMSPITH-----ANKIKKPILIIHGEVDDKVGL--------FPMQAERFFDALK 702 (752)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~P~li~~G~~D~~v~~--------~~~~~~~~~~~l~ 702 (752)
..+.....++- .....| ...++... ...-..++++..|+.|..... .....+++.+.|.
T Consensus 149 ~~~~~~~~w~~--~~~~~~------~~~~~~~~~~~~~~~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~~~l~ 220 (251)
T PF00756_consen 149 ALDPSPSLWGP--SDDEAW------KENDPFDLIKALSQKKKPLRIYLDVGTKDEFGGWEDSAQILQFLANNRELAQLLK 220 (251)
T ss_dssp ESETTHCHHHH--STCGHH------GGCHHHHHHHHHHHTTSEEEEEEEEETTSTTHHCSHHHHHHHHHHHHHHHHHHCC
T ss_pred cccccccccCc--CCcHHh------hhccHHHHhhhhhcccCCCeEEEEeCCCCcccccccCHHHHHHHHHhHhhHHHHH
Confidence 76543111111 001111 11111111 122346799999999983210 0122334444455
Q ss_pred hCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHH
Q 004456 703 GHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 737 (752)
Q Consensus 703 ~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 737 (752)
..+.+..+..++ ++|.. ..+...+...+.|+
T Consensus 221 ~~g~~~~~~~~~-G~H~~---~~W~~~l~~~L~~~ 251 (251)
T PF00756_consen 221 AKGIPHTYHVFP-GGHDW---AYWRRRLPDALPWM 251 (251)
T ss_dssp CEECTTESEEEH-SESSH---HHHHHHHHHHHHHH
T ss_pred HcCCCceEEEec-Cccch---hhHHHHHHHHHhhC
Confidence 566777888888 46763 33556666666654
No 151
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.23 E-value=3.3e-10 Score=110.07 Aligned_cols=196 Identities=18% Similarity=0.318 Sum_probs=121.8
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (752)
.+....||||.++|+-.. ....++++|+++|+.+.+-.... ...+.+++|-|||..++..+++
T Consensus 271 ~V~yi~wSPDdryLlaCg----------~~e~~~lwDv~tgd~~~~y~~~~---~~S~~sc~W~pDg~~~V~Gs~d---- 333 (519)
T KOG0293|consen 271 PVSYIMWSPDDRYLLACG----------FDEVLSLWDVDTGDLRHLYPSGL---GFSVSSCAWCPDGFRFVTGSPD---- 333 (519)
T ss_pred ceEEEEECCCCCeEEecC----------chHheeeccCCcchhhhhcccCc---CCCcceeEEccCCceeEecCCC----
Confidence 588999999999997753 23459999999999888754431 1146789999999998865432
Q ss_pred CCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCCCcc-cc--CCccceeccccCCCCce
Q 004456 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAK-DF--GTPAVYTAVEPSPDQKY 188 (752)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G~~~-~l--~~~~~~~~~~~SpDGk~ 188 (752)
.+++.++++|+.. .. .....+..++.++|||+
T Consensus 334 ---------------------------------------------r~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 334 ---------------------------------------------RTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred ---------------------------------------------CcEEEecCCcchhhcccccccceeEEEEEcCCCcE
Confidence 5799999988431 11 11145778999999999
Q ss_pred EEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEec-----
Q 004456 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ----- 263 (752)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~----- 263 (752)
++....+. .+.+++..+..-+.+... .-++..++.|.||+.+|+-....
T Consensus 369 vl~v~~d~-------------~i~l~~~e~~~dr~lise-------------~~~its~~iS~d~k~~LvnL~~qei~LW 422 (519)
T KOG0293|consen 369 VLLVTVDK-------------KIRLYNREARVDRGLISE-------------EQPITSFSISKDGKLALVNLQDQEIHLW 422 (519)
T ss_pred EEEEeccc-------------ceeeechhhhhhhccccc-------------cCceeEEEEcCCCcEEEEEcccCeeEEe
Confidence 99886553 567776665433321111 11255677777777433322211
Q ss_pred -------------------------cCCCCc--cccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEe
Q 004456 264 -------------------------DRGDAN--VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNE 316 (752)
Q Consensus 264 -------------------------~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~ 316 (752)
.++... ..-++..++|+|+.. .|.....|......+..++|+|.....+.+
T Consensus 423 Dl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~--sgkll~~LsGHs~~vNcVswNP~~p~m~AS 500 (519)
T KOG0293|consen 423 DLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI--SGKLLAVLSGHSKTVNCVSWNPADPEMFAS 500 (519)
T ss_pred ecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc--CCceeEeecCCcceeeEEecCCCCHHHhhc
Confidence 111111 112344477777762 222333455555667777788877666555
Q ss_pred e
Q 004456 317 T 317 (752)
Q Consensus 317 ~ 317 (752)
+
T Consensus 501 a 501 (519)
T KOG0293|consen 501 A 501 (519)
T ss_pred c
Confidence 4
No 152
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=99.23 E-value=7.4e-10 Score=111.04 Aligned_cols=192 Identities=23% Similarity=0.221 Sum_probs=119.5
Q ss_pred hhHHHHHhCCcEEEecCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCC-CCCcEEEEEeChHHHHHHHHHHhC-
Q 004456 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVA-DPSRIAVGGHSYGAFMTAHLLAHA- 623 (752)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~l~~~~~~-d~~~i~l~G~S~GG~~a~~~~~~~- 623 (752)
.+...++++||+|++.|| .|.|..+.........+-|..+|++.+.....+ ...+|+++|+|.||..+++++...
T Consensus 17 ~~l~~~L~~GyaVv~pDY---~Glg~~y~~~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l~~ 93 (290)
T PF03583_consen 17 PFLAAWLARGYAVVAPDY---EGLGTPYLNGRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAELAP 93 (290)
T ss_pred HHHHHHHHCCCEEEecCC---CCCCCcccCcHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHHhH
Confidence 356688899999999554 455543322222333344555555544442122 346899999999999998887553
Q ss_pred ---CCc---eeEEEEccCCCCCCCC-------cc---------C----ccccc---------------------------
Q 004456 624 ---PHL---FCCGIARSGSYNKTLT-------PF---------G----FQTEF--------------------------- 650 (752)
Q Consensus 624 ---p~~---~~~~v~~~~~~~~~~~-------~~---------~----~~~~~--------------------------- 650 (752)
|+. +.++++.++..|.... .. + ++...
T Consensus 94 ~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c~~~~~ 173 (290)
T PF03583_consen 94 SYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRCLADIV 173 (290)
T ss_pred HhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhhHHHHH
Confidence 553 7888888876551100 00 0 00000
Q ss_pred -------------------cchhhhH---HHHHhcCh-hhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCC-C
Q 004456 651 -------------------RTLWEAT---NVYIEMSP-ITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHG-A 706 (752)
Q Consensus 651 -------------------~~~~~~~---~~~~~~~~-~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~-~ 706 (752)
..+...+ ..+.+.+. ...-...+.|++|.||..|.+|| +..+.++++.+.+.| .
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~P~~Pv~i~~g~~D~vvP--~~~~~~l~~~~c~~G~a 251 (290)
T PF03583_consen 174 AEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSLGMGGDWTPTVPVLIYQGTADEVVP--PADTDALVAKWCAAGGA 251 (290)
T ss_pred HHhhhccccccchhccCChhhhhhhHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCC--hHHHHHHHHHHHHcCCC
Confidence 0000000 00011110 00011235899999999999999 999999999999999 8
Q ss_pred cEEEEEeCCCCccCCccccHHHHHHHHHHHHHHHhcCCCC
Q 004456 707 LSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLSNTS 746 (752)
Q Consensus 707 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~~~~~ 746 (752)
+++++.+++.+|.... .......++||...|.+.+.
T Consensus 252 ~V~~~~~~~~~H~~~~----~~~~~~a~~Wl~~rf~G~~~ 287 (290)
T PF03583_consen 252 DVEYVRYPGGGHLGAA----FASAPDALAWLDDRFAGKPA 287 (290)
T ss_pred CEEEEecCCCChhhhh----hcCcHHHHHHHHHHHCCCCC
Confidence 9999999999996432 23346779999999987654
No 153
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=99.21 E-value=3.5e-10 Score=100.98 Aligned_cols=209 Identities=12% Similarity=0.108 Sum_probs=133.6
Q ss_pred ceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEe
Q 004456 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (752)
Q Consensus 481 ~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~ 560 (752)
....+.|+...+..+.+.+..-. .--+||++||. + ...+ .-.-...+..+++.||.++.
T Consensus 9 ~~~~ivi~n~~ne~lvg~lh~tg--------s~e~vvlcHGf--r---------S~Kn--~~~~~~vA~~~e~~gis~fR 67 (269)
T KOG4667|consen 9 IAQKIVIPNSRNEKLVGLLHETG--------STEIVVLCHGF--R---------SHKN--AIIMKNVAKALEKEGISAFR 67 (269)
T ss_pred eeeEEEeccCCCchhhcceeccC--------CceEEEEeecc--c---------cccc--hHHHHHHHHHHHhcCceEEE
Confidence 45567777776666666444322 24789999993 1 1000 01111356688899999999
Q ss_pred cCCCCCCCCCCCCCCchh--HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCC
Q 004456 561 GPSIPIIGEGDKLPNDRF--VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (752)
Q Consensus 561 ~~~~~~~g~g~~~~~~~~--~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~ 638 (752)
+++.|.|++...-.+ +..+.+|+..+++++..... .=-+++|||-||.+++..+...++ +.-+|..+|-++
T Consensus 68 ---fDF~GnGeS~gsf~~Gn~~~eadDL~sV~q~~s~~nr---~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRyd 140 (269)
T KOG4667|consen 68 ---FDFSGNGESEGSFYYGNYNTEADDLHSVIQYFSNSNR---VVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYD 140 (269)
T ss_pred ---EEecCCCCcCCccccCcccchHHHHHHHHHHhccCce---EEEEEEeecCccHHHHHHHHhhcC-chheEEcccccc
Confidence 777788777443222 34556999999999976321 224789999999999999999866 678888888665
Q ss_pred CCCCc--------------cCcc------ccccchhhhHHHHHhcCh--hhhcC--CCCCCEEEEEeCCCCCCCCCHHHH
Q 004456 639 KTLTP--------------FGFQ------TEFRTLWEATNVYIEMSP--ITHAN--KIKKPILIIHGEVDDKVGLFPMQA 694 (752)
Q Consensus 639 ~~~~~--------------~~~~------~~~~~~~~~~~~~~~~~~--~~~~~--~~~~P~li~~G~~D~~v~~~~~~~ 694 (752)
..... -++. ......|.....+...+. ..... ..+||+|-+||..|.+|| .+++
T Consensus 141 l~~~I~eRlg~~~l~~ike~Gfid~~~rkG~y~~rvt~eSlmdrLntd~h~aclkId~~C~VLTvhGs~D~IVP--ve~A 218 (269)
T KOG4667|consen 141 LKNGINERLGEDYLERIKEQGFIDVGPRKGKYGYRVTEESLMDRLNTDIHEACLKIDKQCRVLTVHGSEDEIVP--VEDA 218 (269)
T ss_pred hhcchhhhhcccHHHHHHhCCceecCcccCCcCceecHHHHHHHHhchhhhhhcCcCccCceEEEeccCCceee--chhH
Confidence 32110 0110 001111222211111111 11111 236999999999999999 9999
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCCcc
Q 004456 695 ERFFDALKGHGALSRLVLLPFEHHVYAAR 723 (752)
Q Consensus 695 ~~~~~~l~~~~~~~~~~~~~~~~H~~~~~ 723 (752)
.++++.+.. .++.++||+.|.+...
T Consensus 219 kefAk~i~n----H~L~iIEgADHnyt~~ 243 (269)
T KOG4667|consen 219 KEFAKIIPN----HKLEIIEGADHNYTGH 243 (269)
T ss_pred HHHHHhccC----CceEEecCCCcCccch
Confidence 999888765 4799999999998753
No 154
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.21 E-value=9e-09 Score=103.49 Aligned_cols=220 Identities=11% Similarity=0.117 Sum_probs=126.5
Q ss_pred EecCCCCeEEEeeccccccccccCcceEEEEEcccCcc-eeccCCCCccccccccceEEecCCcEEEEEecCCCCCCCCC
Q 004456 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKK 115 (752)
Q Consensus 37 ~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~-~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~ 115 (752)
.-.|-|..|+| .++..+++++++.... .+.|.+.. .+.-..+||.|.+|+-. +
T Consensus 25 g~dpkgd~ilY-----------~nGksv~ir~i~~~~~~~iYtEH~~-----~vtVAkySPsG~yiASG--D-------- 78 (603)
T KOG0318|consen 25 GGDPKGDNILY-----------TNGKSVIIRNIDNPASVDIYTEHAH-----QVTVAKYSPSGFYIASG--D-------- 78 (603)
T ss_pred ccCCCCCeEEE-----------eCCCEEEEEECCCccceeeeccccc-----eeEEEEeCCCceEEeec--C--------
Confidence 34678999999 4558899999988664 44544433 34566899999977742 1
Q ss_pred ccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCCCcccc----CCc-cceeccccCCCCceEE
Q 004456 116 TMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDF----GTP-AVYTAVEPSPDQKYVL 190 (752)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G~~~~l----~~~-~~~~~~~~SpDGk~l~ 190 (752)
-.+.|..|+..++..-| ... +.+..++|++||++|+
T Consensus 79 ---------------------------------------~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~ 119 (603)
T KOG0318|consen 79 ---------------------------------------VSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIA 119 (603)
T ss_pred ---------------------------------------CcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEE
Confidence 11567778874422111 122 8899999999999999
Q ss_pred EEecccCccccccccCccccEEEEecCCc------eeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEecc
Q 004456 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGK------LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (752)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~ 264 (752)
.....++ +| ..+++||..+. ..+++........-| .|-+.-|.|+. +.|..
T Consensus 120 avGEGre--------rf-g~~F~~DSG~SvGei~GhSr~ins~~~KpsRP---------fRi~T~sdDn~--v~ffe--- 176 (603)
T KOG0318|consen 120 AVGEGRE--------RF-GHVFLWDSGNSVGEITGHSRRINSVDFKPSRP---------FRIATGSDDNT--VAFFE--- 176 (603)
T ss_pred EEecCcc--------ce-eEEEEecCCCccceeeccceeEeeeeccCCCc---------eEEEeccCCCe--EEEee---
Confidence 9865542 11 46778876432 112222221111111 12233343433 33331
Q ss_pred CCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceecccc
Q 004456 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 344 (752)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 344 (752)
++. |.+.. . ......-+..+.|||||..++... ....++++|-.+++ ..-.+.+.
T Consensus 177 GPP-----------FKFk~---s------~r~HskFV~~VRysPDG~~Fat~g----sDgki~iyDGktge-~vg~l~~~ 231 (603)
T KOG0318|consen 177 GPP-----------FKFKS---S------FREHSKFVNCVRYSPDGSRFATAG----SDGKIYIYDGKTGE-KVGELEDS 231 (603)
T ss_pred CCC-----------eeeee---c------ccccccceeeEEECCCCCeEEEec----CCccEEEEcCCCcc-EEEEecCC
Confidence 000 11110 0 111122356788999999888876 44579999988752 11222222
Q ss_pred ccccccCCCCCCceeeCCCCCeEEEeeee
Q 004456 345 VFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (752)
Q Consensus 345 ~~~~~~~~~~~p~~~~s~dg~~l~~~~~~ 373 (752)
..+. .+...++||||++.++-.+.+
T Consensus 232 ~aHk----GsIfalsWsPDs~~~~T~SaD 256 (603)
T KOG0318|consen 232 DAHK----GSIFALSWSPDSTQFLTVSAD 256 (603)
T ss_pred CCcc----ccEEEEEECCCCceEEEecCC
Confidence 2211 235568899999999988744
No 155
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.20 E-value=5e-09 Score=106.22 Aligned_cols=244 Identities=15% Similarity=0.160 Sum_probs=150.0
Q ss_pred ceeEEeecCCCCCCCC-ceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCc-ceeccCCCC
Q 004456 5 TGIGIHRLLPDDSLGP-EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPD 82 (752)
Q Consensus 5 ~~i~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~-~~~lt~~~~ 82 (752)
..|.++++.. ++ ...+.. ....+....|+|+++.|+... ..+.|++++..+++ ...+.....
T Consensus 31 g~i~i~~~~~----~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~----------~~~~i~i~~~~~~~~~~~~~~~~~ 94 (289)
T cd00200 31 GTIKVWDLET----GELLRTLKG--HTGPVRDVAASADGTYLASGS----------SDKTIRLWDLETGECVRTLTGHTS 94 (289)
T ss_pred cEEEEEEeeC----CCcEEEEec--CCcceeEEEECCCCCEEEEEc----------CCCeEEEEEcCcccceEEEeccCC
Confidence 4566777765 43 233331 122466899999999888863 34789999988754 333432221
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEE
Q 004456 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (752)
Q Consensus 83 ~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~ 162 (752)
.+..+.|+|+++.|+.... .+.|.++
T Consensus 95 -----~i~~~~~~~~~~~~~~~~~-------------------------------------------------~~~i~~~ 120 (289)
T cd00200 95 -----YVSSVAFSPDGRILSSSSR-------------------------------------------------DKTIKVW 120 (289)
T ss_pred -----cEEEEEEcCCCCEEEEecC-------------------------------------------------CCeEEEE
Confidence 3567899999876665421 1578888
Q ss_pred cc-CCC-ccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCC
Q 004456 163 SL-DGT-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (752)
Q Consensus 163 ~~-~G~-~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (752)
++ +++ ...+..+ ..+..+.|+|+++.|+....+ +.+.+||+...+........
T Consensus 121 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-------------~~i~i~d~~~~~~~~~~~~~----------- 176 (289)
T cd00200 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQD-------------GTIKLWDLRTGKCVATLTGH----------- 176 (289)
T ss_pred ECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCC-------------CcEEEEEccccccceeEecC-----------
Confidence 88 453 3333333 678899999998887776523 37899998755433222211
Q ss_pred ccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCC-eEEeecccceeeeeeecCCceEEEeee
Q 004456 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALVNETW 318 (752)
Q Consensus 240 ~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~spDg~~l~~~~~ 318 (752)
...+..+.|+|+|+. +++.. ..+.+.+++. ..... ..+......+..+.|+|+++.++...
T Consensus 177 -~~~i~~~~~~~~~~~-l~~~~------------~~~~i~i~d~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~- 238 (289)
T cd00200 177 -TGEVNSVAFSPDGEK-LLSSS------------SDGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPDGYLLASGS- 238 (289)
T ss_pred -ccccceEEECCCcCE-EEEec------------CCCcEEEEEC---CCCceecchhhcCCceEEEEEcCCCcEEEEEc-
Confidence 112668999999986 66653 2347888887 32232 22334455778899999976665543
Q ss_pred cccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEee
Q 004456 319 YKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (752)
Q Consensus 319 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~ 371 (752)
....|+++++..+ .....+.... . ....++|++++++|+...
T Consensus 239 ---~~~~i~i~~~~~~-~~~~~~~~~~-~------~i~~~~~~~~~~~l~~~~ 280 (289)
T cd00200 239 ---EDGTIRVWDLRTG-ECVQTLSGHT-N------SVTSLAWSPDGKRLASGS 280 (289)
T ss_pred ---CCCcEEEEEcCCc-eeEEEccccC-C------cEEEEEECCCCCEEEEec
Confidence 2345888887753 1112222111 0 122367999998887765
No 156
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.19 E-value=4.7e-08 Score=98.92 Aligned_cols=290 Identities=13% Similarity=0.103 Sum_probs=150.1
Q ss_pred cceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecC-CCCCCCCCccCCCCCceecccccccccccchh
Q 004456 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPS-SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTD 139 (752)
Q Consensus 61 ~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (752)
.+.|+++|.++++.......... ... ..||||+.||....- .+...
T Consensus 26 ~~~v~ViD~~~~~v~g~i~~G~~-----P~~-~~spDg~~lyva~~~~~R~~~--------------------------- 72 (352)
T TIGR02658 26 TTQVYTIDGEAGRVLGMTDGGFL-----PNP-VVASDGSFFAHASTVYSRIAR--------------------------- 72 (352)
T ss_pred CceEEEEECCCCEEEEEEEccCC-----Cce-eECCCCCEEEEEecccccccc---------------------------
Confidence 38999999998886543322221 123 599999999876320 00000
Q ss_pred hccCChhhhhhhhhhcccEEEEEcc-CC-CccccCCc--------cceeccccCCCCceEEEEecccCccccccccCccc
Q 004456 140 NLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP--------AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQ 209 (752)
Q Consensus 140 ~~~~~~~d~~~~~~~~~~~i~~~~~-~G-~~~~l~~~--------~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~ 209 (752)
..+...|-++|+ ++ ....+.-+ .....+.+|||||+|++...... .
T Consensus 73 -------------G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~-----------~ 128 (352)
T TIGR02658 73 -------------GKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPS-----------P 128 (352)
T ss_pred -------------CCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCC-----------C
Confidence 002256888888 66 33344322 23348999999999998754421 4
Q ss_pred cEEEEecCCceeEEecCCCCC-CCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCC
Q 004456 210 KVQVWTTDGKLVRELCDLPPA-EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG 288 (752)
Q Consensus 210 ~l~~~d~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 288 (752)
.+-++|+.+++...--..+.. ...+ ......+...+||+. +.+....++ ....-
T Consensus 129 ~V~VvD~~~~kvv~ei~vp~~~~vy~------t~e~~~~~~~~Dg~~-~~v~~d~~g-----------~~~~~------- 183 (352)
T TIGR02658 129 AVGVVDLEGKAFVRMMDVPDCYHIFP------TANDTFFMHCRDGSL-AKVGYGTKG-----------NPKIK------- 183 (352)
T ss_pred EEEEEECCCCcEEEEEeCCCCcEEEE------ecCCccEEEeecCce-EEEEecCCC-----------ceEEe-------
Confidence 788899988866543222221 0011 001123455666664 333321111 10000
Q ss_pred CCCeEEeec--ccceeeeeeec-CCceEEEeeecccCceeEEEEcCCCCCcccee----ccccccccccCCCC--CCcee
Q 004456 289 EKPEILHKL--DLRFRSVSWCD-DSLALVNETWYKTSQTRTWLVCPGSKDVAPRV----LFDRVFENVYSDPG--SPMMT 359 (752)
Q Consensus 289 ~~~~~l~~~--~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~----l~~~~~~~~~~~~~--~p~~~ 359 (752)
...+... ..-...+.+++ ||+.++.+. . +.|+.+|+.+....... ++........ .++ .| ++
T Consensus 184 --~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-e----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~w-rP~g~q~-ia 254 (352)
T TIGR02658 184 --PTEVFHPEDEYLINHPAYSNKSGRLVWPTY-T----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGW-RPGGWQQ-VA 254 (352)
T ss_pred --eeeeecCCccccccCCceEcCCCcEEEEec-C----CeEEEEecCCCcceecceeeecccccccccc-CCCccee-EE
Confidence 0011111 11112235566 776665554 2 56999997663211111 1111110000 011 23 56
Q ss_pred eCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeeccchhhhhceeeeecCCcceecccCCC
Q 004456 360 RTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQL 439 (752)
Q Consensus 360 ~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 439 (752)
+++||+++++..+.. .-+++.....+|+++|.++++...-.....+ +.+ +++|+|++
T Consensus 255 ~~~dg~~lyV~~~~~-----------~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~-----~~~-------iavS~Dgk 311 (352)
T TIGR02658 255 YHRARDRIYLLADQR-----------AKWTHKTASRFLFVVDAKTGKRLRKIELGHE-----IDS-------INVSQDAK 311 (352)
T ss_pred EcCCCCEEEEEecCC-----------ccccccCCCCEEEEEECCCCeEEEEEeCCCc-----eee-------EEECCCCC
Confidence 788888877744221 1111223345799999999887554332221 233 47999999
Q ss_pred EEEEEEecCCCCcEEEEEECCCCCeeE
Q 004456 440 KILTSKESKTEITQYHILSWPLKKSSQ 466 (752)
Q Consensus 440 ~l~~~~~~~~~~~~i~~~d~~~g~~~~ 466 (752)
.++|+.+. ....|.++|..+++..+
T Consensus 312 p~lyvtn~--~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 312 PLLYALST--GDKTLYIFDAETGKELS 336 (352)
T ss_pred eEEEEeCC--CCCcEEEEECcCCeEEe
Confidence 55555432 23458999988876443
No 157
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.19 E-value=5.2e-10 Score=116.78 Aligned_cols=69 Identities=14% Similarity=0.167 Sum_probs=58.2
Q ss_pred hcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCC-CCccCCccccHHHHHHHHHHHHHH
Q 004456 668 HANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPF-EHHVYAARENVMHVIWETDRWLQK 739 (752)
Q Consensus 668 ~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~H~~~~~~~~~~~~~~~~~fl~~ 739 (752)
.+.++++|+|+++|+.|.++| +..++++.+.+...+..++++++++ .||... .+.++++.+.+.+||++
T Consensus 318 ~L~~I~~PtLvI~G~~D~l~p--~~~~~~la~~lp~~~~~a~l~~I~s~~GH~~~-le~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 318 ALSNIEANVLMIPCKQDLLQP--PRYNYKMVDILQKQGKYAEVYEIESINGHMAG-VFDIHLFEKKIYEFLNR 387 (389)
T ss_pred HHhcCCCCEEEEEeCCCCCCC--HHHHHHHHHHhhhcCCCeEEEEECCCCCcchh-hcCHHHHHHHHHHHHcc
Confidence 455789999999999999999 9999999888877666789999985 899865 46678888899999865
No 158
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.19 E-value=4e-09 Score=110.37 Aligned_cols=247 Identities=13% Similarity=0.140 Sum_probs=160.2
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcce-eccCCCCccccccccceEEecCCcEEEEEecCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~-~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~ 110 (752)
++....+||||+.||-.+ .++.+-|+|...|-.. ..+.+.. ++..+.|+.+|+.|+.++-+
T Consensus 352 ~i~~l~YSpDgq~iaTG~----------eDgKVKvWn~~SgfC~vTFteHts-----~Vt~v~f~~~g~~llssSLD--- 413 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGA----------EDGKVKVWNTQSGFCFVTFTEHTS-----GVTAVQFTARGNVLLSSSLD--- 413 (893)
T ss_pred ceeeEEECCCCcEEEecc----------CCCcEEEEeccCceEEEEeccCCC-----ceEEEEEEecCCEEEEeecC---
Confidence 578899999999999853 3456777776666543 2333322 57789999999988876432
Q ss_pred CCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CC-CccccCCc--cceeccccCCCC
Q 004456 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP--AVYTAVEPSPDQ 186 (752)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G-~~~~l~~~--~~~~~~~~SpDG 186 (752)
+.+..+|+ .+ ..+.++.+ .....++..|.|
T Consensus 414 ----------------------------------------------GtVRAwDlkRYrNfRTft~P~p~QfscvavD~sG 447 (893)
T KOG0291|consen 414 ----------------------------------------------GTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSG 447 (893)
T ss_pred ----------------------------------------------CeEEeeeecccceeeeecCCCceeeeEEEEcCCC
Confidence 67888999 44 77778777 556677788889
Q ss_pred ceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCC
Q 004456 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (752)
Q Consensus 187 k~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~ 266 (752)
..+.....+. .+|++|++++++...+.... +..+..++|+|+|.. |+-.+
T Consensus 448 elV~AG~~d~------------F~IfvWS~qTGqllDiLsGH------------EgPVs~l~f~~~~~~-LaS~S----- 497 (893)
T KOG0291|consen 448 ELVCAGAQDS------------FEIFVWSVQTGQLLDILSGH------------EGPVSGLSFSPDGSL-LASGS----- 497 (893)
T ss_pred CEEEeeccce------------EEEEEEEeecCeeeehhcCC------------CCcceeeEEccccCe-EEecc-----
Confidence 8877665553 58999999988765543322 122678899999995 55554
Q ss_pred CCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCC------------
Q 004456 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK------------ 334 (752)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~------------ 334 (752)
+...+.+|++-+.. ++.. -......+..++|+|||+.|+.++-+ +.|-.+|...+
T Consensus 498 -------WDkTVRiW~if~s~-~~vE-tl~i~sdvl~vsfrPdG~elaVaTld----gqItf~d~~~~~q~~~IdgrkD~ 564 (893)
T KOG0291|consen 498 -------WDKTVRIWDIFSSS-GTVE-TLEIRSDVLAVSFRPDGKELAVATLD----GQITFFDIKEAVQVGSIDGRKDL 564 (893)
T ss_pred -------ccceEEEEEeeccC-ceee-eEeeccceeEEEEcCCCCeEEEEEec----ceEEEEEhhhceeeccccchhhc
Confidence 55678888874211 1222 23455667789999999999998732 23444444332
Q ss_pred ---CccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeE
Q 004456 335 ---DVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKER 409 (752)
Q Consensus 335 ---~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~ 409 (752)
+......+..+... .-.+-.++.|+||+.|+.. +..+.|.++|+.++-+-+
T Consensus 565 ~~gR~~~D~~ta~~sa~---~K~Ftti~ySaDG~~IlAg---------------------G~sn~iCiY~v~~~vllk 618 (893)
T KOG0291|consen 565 SGGRKETDRITAENSAK---GKTFTTICYSADGKCILAG---------------------GESNSICIYDVPEGVLLK 618 (893)
T ss_pred cccccccceeehhhccc---CCceEEEEEcCCCCEEEec---------------------CCcccEEEEECchhheee
Confidence 11111222221111 0123357899999877655 334469999998876533
No 159
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.18 E-value=6.6e-10 Score=104.44 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=84.0
Q ss_pred cccEEEEEccC-CCccccCC--ccceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCC
Q 004456 155 TTAQLVLGSLD-GTAKDFGT--PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (752)
Q Consensus 155 ~~~~i~~~~~~-G~~~~l~~--~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 231 (752)
....||.++.. .....+.. .+.+..++|||+|+++++..... +..+.+||+++.....+....
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~-----------~~~v~lyd~~~~~i~~~~~~~--- 102 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSM-----------PAKVTLYDVKGKKIFSFGTQP--- 102 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccC-----------CcccEEEcCcccEeEeecCCC---
Confidence 45789999884 45444433 35699999999999998875432 247899999866555554332
Q ss_pred CCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEee-cccceeeeeeecCC
Q 004456 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFRSVSWCDDS 310 (752)
Q Consensus 232 ~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~~~~~~~~~~spDg 310 (752)
...+.|||+|+. |+..... ...+.+.++|+ . +.+.+.. .......+.|||||
T Consensus 103 ------------~n~i~wsP~G~~-l~~~g~~---------n~~G~l~~wd~---~--~~~~i~~~~~~~~t~~~WsPdG 155 (194)
T PF08662_consen 103 ------------RNTISWSPDGRF-LVLAGFG---------NLNGDLEFWDV---R--KKKKISTFEHSDATDVEWSPDG 155 (194)
T ss_pred ------------ceEEEECCCCCE-EEEEEcc---------CCCcEEEEEEC---C--CCEEeeccccCcEEEEEEcCCC
Confidence 336899999997 6666432 13356888988 2 3344432 23346788999999
Q ss_pred ceEEEee
Q 004456 311 LALVNET 317 (752)
Q Consensus 311 ~~l~~~~ 317 (752)
++|+.+.
T Consensus 156 r~~~ta~ 162 (194)
T PF08662_consen 156 RYLATAT 162 (194)
T ss_pred CEEEEEE
Confidence 9999876
No 160
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.18 E-value=9.7e-10 Score=120.00 Aligned_cols=156 Identities=21% Similarity=0.243 Sum_probs=94.0
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEccc----------CcceeccCCCC----ccccccccceEEecC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET----------GEAKPLFESPD----ICLNAVFGSFVWVNN 97 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~----------g~~~~lt~~~~----~~~~~~~~~~~wspd 97 (752)
.++-.+|||||+++|+.+. ..-|.|+..+. |...-+.+... ......+.+..||||
T Consensus 71 sv~CVR~S~dG~~lAsGSD----------D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~ 140 (942)
T KOG0973|consen 71 SVNCVRFSPDGSYLASGSD----------DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD 140 (942)
T ss_pred ceeEEEECCCCCeEeeccC----------cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC
Confidence 4666789999999999642 23333443331 11111110000 001224678899999
Q ss_pred CcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCC-ccccCCc-
Q 004456 98 STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP- 174 (752)
Q Consensus 98 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~-~~~l~~~- 174 (752)
+.+|+-.+.+ ..|.+++. +.+ .+.+..+
T Consensus 141 ~~~lvS~s~D-------------------------------------------------nsViiwn~~tF~~~~vl~~H~ 171 (942)
T KOG0973|consen 141 DSLLVSVSLD-------------------------------------------------NSVIIWNAKTFELLKVLRGHQ 171 (942)
T ss_pred ccEEEEeccc-------------------------------------------------ceEEEEccccceeeeeeeccc
Confidence 9988876431 46777777 443 3444444
Q ss_pred cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCcee-EEecCCCCCCCCCcccCCccccccceeeeeCC
Q 004456 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (752)
Q Consensus 175 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG 253 (752)
.-+.++.|.|=||+++..+.++ .|.+|+...-.. +.++.+ ..+- + .....+.++|||||
T Consensus 172 s~VKGvs~DP~Gky~ASqsdDr-------------tikvwrt~dw~i~k~It~p-f~~~-~-----~~T~f~RlSWSPDG 231 (942)
T KOG0973|consen 172 SLVKGVSWDPIGKYFASQSDDR-------------TLKVWRTSDWGIEKSITKP-FEES-P-----LTTFFLRLSWSPDG 231 (942)
T ss_pred ccccceEECCccCeeeeecCCc-------------eEEEEEcccceeeEeeccc-hhhC-C-----CcceeeecccCCCc
Confidence 7888999999999999998775 788888554333 333332 2100 0 11224579999999
Q ss_pred CceEEEEEeccCCC
Q 004456 254 PSTLYWVEAQDRGD 267 (752)
Q Consensus 254 ~~~l~~~~~~~~~~ 267 (752)
++ |+.....+++.
T Consensus 232 ~~-las~nA~n~~~ 244 (942)
T KOG0973|consen 232 HH-LASPNAVNGGK 244 (942)
T ss_pred Ce-ecchhhccCCc
Confidence 98 76665544443
No 161
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.18 E-value=1.2e-09 Score=134.25 Aligned_cols=200 Identities=17% Similarity=0.218 Sum_probs=121.8
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCCc----------hhHHHH
Q 004456 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND----------RFVEQL 582 (752)
Q Consensus 513 ~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~----------~~~~~~ 582 (752)
.|.||++||.+... ..| ..+...| ..+|.|++ .+.+|+|.+.... ......
T Consensus 1371 ~~~vVllHG~~~s~-----------~~w----~~~~~~L-~~~~rVi~---~Dl~G~G~S~~~~~~~~~~~~~~~si~~~ 1431 (1655)
T PLN02980 1371 GSVVLFLHGFLGTG-----------EDW----IPIMKAI-SGSARCIS---IDLPGHGGSKIQNHAKETQTEPTLSVELV 1431 (1655)
T ss_pred CCeEEEECCCCCCH-----------HHH----HHHHHHH-hCCCEEEE---EcCCCCCCCCCccccccccccccCCHHHH
Confidence 58999999964211 111 1233344 45699999 5566777663321 123333
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc------------------c
Q 004456 583 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP------------------F 644 (752)
Q Consensus 583 ~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~------------------~ 644 (752)
.+++.+.++.+ ..+++.|+||||||.+++.++.++|++++++|++++........ .
T Consensus 1432 a~~l~~ll~~l------~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~ 1505 (1655)
T PLN02980 1432 ADLLYKLIEHI------TPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDH 1505 (1655)
T ss_pred HHHHHHHHHHh------CCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhh
Confidence 44444444332 24689999999999999999999999999999887642210000 0
Q ss_pred Cccc-----cccchhhh----H-------------------HHHHhc------ChhhhcCCCCCCEEEEEeCCCCCCCCC
Q 004456 645 GFQT-----EFRTLWEA----T-------------------NVYIEM------SPITHANKIKKPILIIHGEVDDKVGLF 690 (752)
Q Consensus 645 ~~~~-----~~~~~~~~----~-------------------~~~~~~------~~~~~~~~~~~P~li~~G~~D~~v~~~ 690 (752)
+... .....|.. . ..+... +....+.++++|+|+++|++|..++
T Consensus 1506 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~I~~PtLlI~Ge~D~~~~-- 1583 (1655)
T PLN02980 1506 GLEIFLENWYSGELWKSLRNHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQCDTPLLLVVGEKDVKFK-- 1583 (1655)
T ss_pred hHHHHHHHhccHHHhhhhccCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhhCCCCEEEEEECCCCccH--
Confidence 0000 00000000 0 000000 0112356788999999999998753
Q ss_pred HHHHHHHHHHHHhCC--------CcEEEEEeCCCCccCCccccHHHHHHHHHHHHHHHh
Q 004456 691 PMQAERFFDALKGHG--------ALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 741 (752)
Q Consensus 691 ~~~~~~~~~~l~~~~--------~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 741 (752)
..+.++.+.+.+.. ..++++++|++||... .+.++.+.+.+.+||.+.-
T Consensus 1584 -~~a~~~~~~i~~a~~~~~~~~~~~a~lvvI~~aGH~~~-lE~Pe~f~~~I~~FL~~~~ 1640 (1655)
T PLN02980 1584 -QIAQKMYREIGKSKESGNDKGKEIIEIVEIPNCGHAVH-LENPLPVIRALRKFLTRLH 1640 (1655)
T ss_pred -HHHHHHHHHccccccccccccccceEEEEECCCCCchH-HHCHHHHHHHHHHHHHhcc
Confidence 45666666654421 1368999999999876 5778889999999999854
No 162
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.17 E-value=2.1e-08 Score=93.59 Aligned_cols=270 Identities=12% Similarity=0.117 Sum_probs=167.8
Q ss_pred CceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCC
Q 004456 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (752)
Q Consensus 30 ~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~ 109 (752)
..++....|++|+++|+.. +..+.|.|+|.-+....+....+.. =|..+++||.|+.|+...-++
T Consensus 55 ~~Ki~~~~ws~Dsr~ivSa----------SqDGklIvWDs~TtnK~haipl~s~----WVMtCA~sPSg~~VAcGGLdN- 119 (343)
T KOG0286|consen 55 LNKIYAMDWSTDSRRIVSA----------SQDGKLIVWDSFTTNKVHAIPLPSS----WVMTCAYSPSGNFVACGGLDN- 119 (343)
T ss_pred ccceeeeEecCCcCeEEee----------ccCCeEEEEEcccccceeEEecCce----eEEEEEECCCCCeEEecCcCc-
Confidence 3479999999999999986 3457899999877654443322321 245789999999999863210
Q ss_pred CCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc---CC---CccccCCc-cceecccc
Q 004456 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL---DG---TAKDFGTP-AVYTAVEP 182 (752)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~---~G---~~~~l~~~-~~~~~~~~ 182 (752)
.=.||-+.. +| ..+.+..+ +..+...|
T Consensus 120 ----------------------------------------------~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f 153 (343)
T KOG0286|consen 120 ----------------------------------------------KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRF 153 (343)
T ss_pred ----------------------------------------------eeEEEecccccccccceeeeeecCccceeEEEEE
Confidence 024554443 33 12345555 67777788
Q ss_pred CCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeee-CCCceEEEEE
Q 004456 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRA-DKPSTLYWVE 261 (752)
Q Consensus 183 SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wsp-DG~~~l~~~~ 261 (752)
-+|+ +|+-.+.+ ...-+||+++++......... .-+..++++| |++. |++
T Consensus 154 ~dD~-~ilT~SGD-------------~TCalWDie~g~~~~~f~GH~------------gDV~slsl~p~~~nt---FvS 204 (343)
T KOG0286|consen 154 LDDN-HILTGSGD-------------MTCALWDIETGQQTQVFHGHT------------GDVMSLSLSPSDGNT---FVS 204 (343)
T ss_pred cCCC-ceEecCCC-------------ceEEEEEcccceEEEEecCCc------------ccEEEEecCCCCCCe---EEe
Confidence 8766 55555444 378899999887665443321 1256789999 8886 332
Q ss_pred eccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceec
Q 004456 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL 341 (752)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l 341 (752)
.. -....++||+. ++...+.....+..+..+.|-|+|..++..+.+. ....+|+... ....+
T Consensus 205 g~----------cD~~aklWD~R--~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~----tcRlyDlRaD--~~~a~ 266 (343)
T KOG0286|consen 205 GG----------CDKSAKLWDVR--SGQCVQTFEGHESDINSVRFFPSGDAFATGSDDA----TCRLYDLRAD--QELAV 266 (343)
T ss_pred cc----------cccceeeeecc--CcceeEeecccccccceEEEccCCCeeeecCCCc----eeEEEeecCC--cEEee
Confidence 11 22367888885 4555666677777899999999999988877332 3445555442 12333
Q ss_pred cccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeeccchhhhhc
Q 004456 342 FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFET 421 (752)
Q Consensus 342 ~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 421 (752)
....... -+..++.+|..|++|+....+ ....+||.-.++..-+....+. .
T Consensus 267 ys~~~~~----~gitSv~FS~SGRlLfagy~d---------------------~~c~vWDtlk~e~vg~L~GHeN----R 317 (343)
T KOG0286|consen 267 YSHDSII----CGITSVAFSKSGRLLFAGYDD---------------------FTCNVWDTLKGERVGVLAGHEN----R 317 (343)
T ss_pred eccCccc----CCceeEEEcccccEEEeeecC---------------------CceeEeeccccceEEEeeccCC----e
Confidence 3322111 134457789999877654411 2478999776765544443332 2
Q ss_pred eeeeecCCcceecccCCCEEEE
Q 004456 422 AVALVFGQGEEDINLNQLKILT 443 (752)
Q Consensus 422 ~~~~~~~~~~~~~s~d~~~l~~ 443 (752)
+..+ .++|||--+.-
T Consensus 318 vScl-------~~s~DG~av~T 332 (343)
T KOG0286|consen 318 VSCL-------GVSPDGMAVAT 332 (343)
T ss_pred eEEE-------EECCCCcEEEe
Confidence 3343 78999986644
No 163
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=3e-09 Score=110.17 Aligned_cols=252 Identities=15% Similarity=0.187 Sum_probs=163.6
Q ss_pred cceeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCc
Q 004456 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (752)
Q Consensus 4 ~~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~ 83 (752)
...+|+++... |+.+++..+. ...+....|+|+|++||... ..+.+.|+|.+..+..+-....+
T Consensus 196 g~~vylW~~~s----~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~----------~~g~v~iwD~~~~k~~~~~~~~h- 259 (484)
T KOG0305|consen 196 GQSVYLWSASS----GSVTELCSFG-EELVTSVKWSPDGSHLAVGT----------SDGTVQIWDVKEQKKTRTLRGSH- 259 (484)
T ss_pred cceEEEEecCC----CceEEeEecC-CCceEEEEECCCCCEEEEee----------cCCeEEEEehhhccccccccCCc-
Confidence 45788998877 8988888664 34689999999999999963 34688888877655433322211
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEc
Q 004456 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (752)
Q Consensus 84 ~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~ 163 (752)
..-++.++|. +..+...+ +...|...|
T Consensus 260 --~~rvg~laW~--~~~lssGs-------------------------------------------------r~~~I~~~d 286 (484)
T KOG0305|consen 260 --ASRVGSLAWN--SSVLSSGS-------------------------------------------------RDGKILNHD 286 (484)
T ss_pred --CceeEEEecc--CceEEEec-------------------------------------------------CCCcEEEEE
Confidence 1136788998 33333321 113455555
Q ss_pred c-CC-C-ccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCc-eeEEecCCCCCCCCCcccC
Q 004456 164 L-DG-T-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYN 238 (752)
Q Consensus 164 ~-~G-~-~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~ 238 (752)
+ .. . ...+..+ ..+..+.|++||++++-..+++ .+.+||.... ....++....+
T Consensus 287 vR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN-------------~~~Iwd~~~~~p~~~~~~H~aA-------- 345 (484)
T KOG0305|consen 287 VRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDN-------------VVFIWDGLSPEPKFTFTEHTAA-------- 345 (484)
T ss_pred EecchhhhhhhhcccceeeeeEECCCCCeeccCCCcc-------------ceEeccCCCccccEEEecccee--------
Confidence 5 22 2 2223334 7788999999999998876664 7899998443 33445555444
Q ss_pred CccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeee
Q 004456 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETW 318 (752)
Q Consensus 239 ~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~ 318 (752)
+..++|+|-.+. |+-+. ++ .....|..||+ .++....-......+..+.||+..+-|+.+..
T Consensus 346 -----VKA~awcP~q~~-lLAsG---GG------s~D~~i~fwn~---~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 346 -----VKALAWCPWQSG-LLATG---GG------SADRCIKFWNT---NTGARIDSVDTGSQVCSLIWSKKYKELLSTHG 407 (484)
T ss_pred -----eeEeeeCCCccC-ceEEc---CC------CcccEEEEEEc---CCCcEecccccCCceeeEEEcCCCCEEEEecC
Confidence 778999999888 44432 11 12337888888 45555445566778999999999999999886
Q ss_pred cccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeee
Q 004456 319 YKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (752)
Q Consensus 319 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~ 373 (752)
.....-.||.+.--. ....+..+... + -.++|||||..|+..+.+
T Consensus 408 ~s~n~i~lw~~ps~~---~~~~l~gH~~R-V------l~la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 408 YSENQITLWKYPSMK---LVAELLGHTSR-V------LYLALSPDGETIVTGAAD 452 (484)
T ss_pred CCCCcEEEEeccccc---eeeeecCCcce-e------EEEEECCCCCEEEEeccc
Confidence 554555666665322 11222222211 1 126799999999988854
No 164
>PRK05855 short chain dehydrogenase; Validated
Probab=99.16 E-value=3.8e-10 Score=127.91 Aligned_cols=212 Identities=15% Similarity=0.163 Sum_probs=120.9
Q ss_pred CCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCC
Q 004456 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 569 (752)
Q Consensus 490 ~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~ 569 (752)
.+|..+.+..+-+. ..|.||++||.+.. ...| ..+...| ..||.|++ ++.+|+
T Consensus 10 ~~g~~l~~~~~g~~--------~~~~ivllHG~~~~-----------~~~w----~~~~~~L-~~~~~Vi~---~D~~G~ 62 (582)
T PRK05855 10 SDGVRLAVYEWGDP--------DRPTVVLVHGYPDN-----------HEVW----DGVAPLL-ADRFRVVA---YDVRGA 62 (582)
T ss_pred eCCEEEEEEEcCCC--------CCCeEEEEcCCCch-----------HHHH----HHHHHHh-hcceEEEE---ecCCCC
Confidence 47778877655321 15899999996311 0111 1234445 68999999 566677
Q ss_pred CCCCCCc----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEccCCC-CC---
Q 004456 570 GDKLPND----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSY-NK--- 639 (752)
Q Consensus 570 g~~~~~~----~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~--p~~~~~~v~~~~~~-~~--- 639 (752)
|.+.... .......+|+.++++.+.. ..++.|+||||||.+++.++... ++.+...+..++.. +.
T Consensus 63 G~S~~~~~~~~~~~~~~a~dl~~~i~~l~~-----~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~~~~~~~~~ 137 (582)
T PRK05855 63 GRSSAPKRTAAYTLARLADDFAAVIDAVSP-----DRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSGPSLDHVGF 137 (582)
T ss_pred CCCCCCCcccccCHHHHHHHHHHHHHHhCC-----CCcEEEEecChHHHHHHHHHhCccchhhhhhheeccCCchHHHHH
Confidence 7764322 2355667777777776521 23599999999999998777652 23333333333211 00
Q ss_pred ----CC---CccCc--------c----------c--------cccchhhh-------------------------HHHHH
Q 004456 640 ----TL---TPFGF--------Q----------T--------EFRTLWEA-------------------------TNVYI 661 (752)
Q Consensus 640 ----~~---~~~~~--------~----------~--------~~~~~~~~-------------------------~~~~~ 661 (752)
.. ....+ . . .....+.. ...+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (582)
T PRK05855 138 WLRSGLRRPTPRRLARALGQLLRSWYIYLFHLPVLPELLWRLGLGRAWPRLLRRVEGTPVDPIPTQTTLSDGAHGVKLYR 217 (582)
T ss_pred HHhhcccccchhhhhHHHHHHhhhHHHHHHhCCCCcHHHhccchhhHHHHhhhhccCCCcchhhhhhhhccccchHHHHH
Confidence 00 00000 0 0 00000000 00000
Q ss_pred hc----ChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHH
Q 004456 662 EM----SPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 737 (752)
Q Consensus 662 ~~----~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 737 (752)
.. ........+++|+|+++|++|.++| ....+.+.+.+. ..++++++ +||... .+.+..+...+.+|+
T Consensus 218 ~~~~~~~~~~~~~~~~~P~lii~G~~D~~v~--~~~~~~~~~~~~----~~~~~~~~-~gH~~~-~e~p~~~~~~i~~fl 289 (582)
T PRK05855 218 ANMIRSLSRPRERYTDVPVQLIVPTGDPYVR--PALYDDLSRWVP----RLWRREIK-AGHWLP-MSHPQVLAAAVAEFV 289 (582)
T ss_pred hhhhhhhccCccCCccCceEEEEeCCCcccC--HHHhccccccCC----cceEEEcc-CCCcch-hhChhHHHHHHHHHH
Confidence 00 0001123478999999999999998 777666554332 34667776 689876 566788889999999
Q ss_pred HHHh
Q 004456 738 QKYC 741 (752)
Q Consensus 738 ~~~l 741 (752)
.+.-
T Consensus 290 ~~~~ 293 (582)
T PRK05855 290 DAVE 293 (582)
T ss_pred Hhcc
Confidence 8743
No 165
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.16 E-value=1e-08 Score=106.72 Aligned_cols=300 Identities=10% Similarity=0.060 Sum_probs=153.9
Q ss_pred ceEEEEEc--ccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchh
Q 004456 62 LRVWIADA--ETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTD 139 (752)
Q Consensus 62 ~~l~v~~~--~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (752)
..|+++.+ ++++...+..... ......+.++|+++.||.+......
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~---~~~Ps~l~~~~~~~~LY~~~e~~~~----------------------------- 60 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAE---GENPSWLAVSPDGRRLYVVNEGSGD----------------------------- 60 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEE---SSSECCEEE-TTSSEEEEEETTSST-----------------------------
T ss_pred CcEEEEEEcCCCCCceEeeeecC---CCCCceEEEEeCCCEEEEEEccccC-----------------------------
Confidence 56666665 5666554432111 1124577889999988887442101
Q ss_pred hccCChhhhhhhhhhcccEEEEEcc--C-CCccccCC----ccceeccccCCCCceEEEEecccCccccccccCccccEE
Q 004456 140 NLLKDEYDESLFDYYTTAQLVLGSL--D-GTAKDFGT----PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQ 212 (752)
Q Consensus 140 ~~~~~~~d~~~~~~~~~~~i~~~~~--~-G~~~~l~~----~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~ 212 (752)
.+.|..+.+ + |+.+.+.. ......++.+|||++|++..... +.+.
T Consensus 61 ----------------~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~------------g~v~ 112 (345)
T PF10282_consen 61 ----------------SGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGG------------GSVS 112 (345)
T ss_dssp ----------------TTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTT------------TEEE
T ss_pred ----------------CCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccC------------CeEE
Confidence 134444444 4 65544432 24556789999999999986654 4677
Q ss_pred EEecCC-ceeEEe---cCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCC
Q 004456 213 VWTTDG-KLVREL---CDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG 288 (752)
Q Consensus 213 ~~d~~~-~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 288 (752)
+++++. +..... ...... .|.........+..+.++|||++ ++... . ..+.|++++++. .+
T Consensus 113 v~~l~~~g~l~~~~~~~~~~g~--g~~~~rq~~~h~H~v~~~pdg~~-v~v~d-l----------G~D~v~~~~~~~-~~ 177 (345)
T PF10282_consen 113 VFPLDDDGSLGEVVQTVRHEGS--GPNPDRQEGPHPHQVVFSPDGRF-VYVPD-L----------GADRVYVYDIDD-DT 177 (345)
T ss_dssp EEEECTTSEEEEEEEEEESEEE--ESSTTTTSSTCEEEEEE-TTSSE-EEEEE-T----------TTTEEEEEEE-T-TS
T ss_pred EEEccCCcccceeeeecccCCC--CCcccccccccceeEEECCCCCE-EEEEe-c----------CCCEEEEEEEeC-CC
Confidence 777754 322222 111000 01000011122567899999997 55553 1 445777777731 12
Q ss_pred CCCeE---E-eecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccc-cccCC-CCCCceeeCC
Q 004456 289 EKPEI---L-HKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE-NVYSD-PGSPMMTRTS 362 (752)
Q Consensus 289 ~~~~~---l-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-~~~~~-~~~p~~~~s~ 362 (752)
+.... + .......+.++|+|||+.++... ..++.-.++.++..++ ..+.+...... ..... ...-.+..||
T Consensus 178 ~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~-e~s~~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i~isp 254 (345)
T PF10282_consen 178 GKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN-ELSNTVSVFDYDPSDG--SLTEIQTISTLPEGFTGENAPAEIAISP 254 (345)
T ss_dssp -TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEE-TTTTEEEEEEEETTTT--EEEEEEEEESCETTSCSSSSEEEEEE-T
T ss_pred ceEEEeeccccccCCCCcEEEEcCCcCEEEEec-CCCCcEEEEeecccCC--ceeEEEEeeeccccccccCCceeEEEec
Confidence 22222 1 12333467889999999877765 3334333444442232 22222111100 00000 0111256899
Q ss_pred CCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEec--CCCceeEEeeccchhhhhceeeeecCCcceecccCCCE
Q 004456 363 TGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDI--NTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLK 440 (752)
Q Consensus 363 dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~--~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 440 (752)
||++|+++... ...|.++++ ++|+.+.+-..... ..... .++++|||++
T Consensus 255 dg~~lyvsnr~--------------------~~sI~vf~~d~~~g~l~~~~~~~~~--G~~Pr-------~~~~s~~g~~ 305 (345)
T PF10282_consen 255 DGRFLYVSNRG--------------------SNSISVFDLDPATGTLTLVQTVPTG--GKFPR-------HFAFSPDGRY 305 (345)
T ss_dssp TSSEEEEEECT--------------------TTEEEEEEECTTTTTEEEEEEEEES--SSSEE-------EEEE-TTSSE
T ss_pred CCCEEEEEecc--------------------CCEEEEEEEecCCCceEEEEEEeCC--CCCcc-------EEEEeCCCCE
Confidence 99999888732 123555554 66777765322110 00122 3588999999
Q ss_pred EEEEEecCCCCcEEEEEECCCCCeeEeec
Q 004456 441 ILTSKESKTEITQYHILSWPLKKSSQITN 469 (752)
Q Consensus 441 l~~~~~~~~~~~~i~~~d~~~g~~~~lt~ 469 (752)
|+......+ .=.+|.+|.++|.++.+..
T Consensus 306 l~Va~~~s~-~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 306 LYVANQDSN-TVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EEEEETTTT-EEEEEEEETTTTEEEEEEE
T ss_pred EEEEecCCC-eEEEEEEeCCCCcEEEecc
Confidence 987664444 3346777878888776653
No 166
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=99.14 E-value=1.3e-09 Score=113.01 Aligned_cols=188 Identities=17% Similarity=0.131 Sum_probs=102.2
Q ss_pred CCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCC-----CC-----C-------
Q 004456 511 GPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG-----DK-----L------- 573 (752)
Q Consensus 511 ~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g-----~~-----~------- 573 (752)
+++|+|||-||.+ +....+..++..||++||+|++++-++..+.. +. .
T Consensus 98 ~~~PvvIFSHGlg---------------g~R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~ 162 (379)
T PF03403_consen 98 GKFPVVIFSHGLG---------------GSRTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYL 162 (379)
T ss_dssp S-EEEEEEE--TT-----------------TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT-------
T ss_pred CCCCEEEEeCCCC---------------cchhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCcccccccccccc
Confidence 3599999999953 12233446788999999999997766543210 00 0
Q ss_pred -------C---Cch-------hHHHHHHHHHHHHHHHHHc--------------------CCCCCCcEEEEEeChHHHHH
Q 004456 574 -------P---NDR-------FVEQLVSSAEAAVEEVVRR--------------------GVADPSRIAVGGHSYGAFMT 616 (752)
Q Consensus 574 -------~---~~~-------~~~~~~~d~~~~~~~l~~~--------------------~~~d~~~i~l~G~S~GG~~a 616 (752)
. ... ....-..++..+++.|.+. +.+|.++|+++|||+||..+
T Consensus 163 ~~~~~~~~~~~~~~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa 242 (379)
T PF03403_consen 163 EEEWIPLRDFDPEEEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATA 242 (379)
T ss_dssp --EEEE-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHH
T ss_pred ccceeccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHH
Confidence 0 000 0111246677777777641 23567899999999999999
Q ss_pred HHHHHhCCCceeEEEEccCCCCCCCCccCccccccchhhhHHHHHhcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHH
Q 004456 617 AHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAER 696 (752)
Q Consensus 617 ~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~ 696 (752)
+.++.+. .+|+++|++.|..- +. .. .....++.|+|+|+++. ..- ..+...
T Consensus 243 ~~~l~~d-~r~~~~I~LD~W~~----Pl----~~----------------~~~~~i~~P~L~InSe~-f~~---~~~~~~ 293 (379)
T PF03403_consen 243 LQALRQD-TRFKAGILLDPWMF----PL----GD----------------EIYSKIPQPLLFINSES-FQW---WENIFR 293 (379)
T ss_dssp HHHHHH--TT--EEEEES---T----TS-----G----------------GGGGG--S-EEEEEETT-T-----HHHHHH
T ss_pred HHHHhhc-cCcceEEEeCCccc----CC----Cc----------------ccccCCCCCEEEEECcc-cCC---hhhHHH
Confidence 9988887 78999999988532 11 10 00134678999998886 321 333333
Q ss_pred HHHHHHhCCCcEEEEEeCCCCccCCc-----c-------------cc----HHHHHHHHHHHHHHHhcC
Q 004456 697 FFDALKGHGALSRLVLLPFEHHVYAA-----R-------------EN----VMHVIWETDRWLQKYCLS 743 (752)
Q Consensus 697 ~~~~l~~~~~~~~~~~~~~~~H~~~~-----~-------------~~----~~~~~~~~~~fl~~~l~~ 743 (752)
+.+ +........+..+.|..|.-.. . .. .+...+.+++||+++|+-
T Consensus 294 ~~~-~~~~~~~~~~~ti~gt~H~s~sD~~ll~P~~l~~~~~~~g~~dp~~a~~i~~~~~l~FL~~~L~~ 361 (379)
T PF03403_consen 294 MKK-VISNNKESRMLTIKGTAHLSFSDFPLLSPWLLGKFLGLKGSIDPERALRINNRASLAFLRRHLGL 361 (379)
T ss_dssp HHT-T--TTS-EEEEEETT--GGGGSGGGGTS-HHHHHHTTSS-SS-HHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHH-HhccCCCcEEEEECCCcCCCcchhhhhhHHHHHHHhccccCcCHHHHHHHHHHHHHHHHHHhcCC
Confidence 333 3334456788999999994210 0 11 234566789999999873
No 167
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=4.1e-09 Score=104.23 Aligned_cols=277 Identities=10% Similarity=0.026 Sum_probs=162.6
Q ss_pred ceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCC
Q 004456 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (752)
Q Consensus 31 ~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~ 110 (752)
..++...|.|.-..+..+ ..+..+.|+.++|..-..|+.-.-.. . .+....++|+|+..+|++.
T Consensus 214 ~~I~sv~FHp~~plllva----------G~d~~lrifqvDGk~N~~lqS~~l~~-f-Pi~~a~f~p~G~~~i~~s~---- 277 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVA----------GLDGTLRIFQVDGKVNPKLQSIHLEK-F-PIQKAEFAPNGHSVIFTSG---- 277 (514)
T ss_pred CCceEEEecCCCceEEEe----------cCCCcEEEEEecCccChhheeeeecc-C-ccceeeecCCCceEEEecc----
Confidence 368889999987665553 33455666666666655554322111 1 2457799999996666532
Q ss_pred CCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCccccCCc-----cceeccccCC
Q 004456 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-----AVYTAVEPSP 184 (752)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~~l~~~-----~~~~~~~~Sp 184 (752)
+..-+|.+|+ +++..++... .....+..||
T Consensus 278 --------------------------------------------rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh 313 (514)
T KOG2055|consen 278 --------------------------------------------RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH 313 (514)
T ss_pred --------------------------------------------cceEEEEeeccccccccccCCCCcccchhheeEecC
Confidence 1146889999 7777766544 3567999999
Q ss_pred CCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEecc
Q 004456 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (752)
Q Consensus 185 DGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~ 264 (752)
|+++|++..... -|.+.-..+++...-...+ ..+.++.|+.||+. |+.+.
T Consensus 314 d~~fia~~G~~G-------------~I~lLhakT~eli~s~Kie-------------G~v~~~~fsSdsk~-l~~~~--- 363 (514)
T KOG2055|consen 314 DSNFIAIAGNNG-------------HIHLLHAKTKELITSFKIE-------------GVVSDFTFSSDSKE-LLASG--- 363 (514)
T ss_pred CCCeEEEcccCc-------------eEEeehhhhhhhhheeeec-------------cEEeeEEEecCCcE-EEEEc---
Confidence 999999875543 5666655555332212222 22678999999986 55543
Q ss_pred CCCCccccCccceEEeccCCCCCCCCCeEEeeccc--ceeeeeeecCCceEEEeeecccCceeEEEEcCCCC--Ccccee
Q 004456 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL--RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK--DVAPRV 340 (752)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~--~~~~~~ 340 (752)
..+.+|++|+. ..........++ ...+++-|++|.+|+.++ ..+-+-+++.++. ...+++
T Consensus 364 ---------~~GeV~v~nl~---~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS----~~GiVNIYd~~s~~~s~~PkP 427 (514)
T KOG2055|consen 364 ---------GTGEVYVWNLR---QNSCLHRFVDDGSVHGTSLCISLNGSYLATGS----DSGIVNIYDGNSCFASTNPKP 427 (514)
T ss_pred ---------CCceEEEEecC---CcceEEEEeecCccceeeeeecCCCceEEecc----CcceEEEeccchhhccCCCCc
Confidence 44589999993 222222222223 345677889999998877 2223444553332 133444
Q ss_pred cccc-ccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeeccchhhh
Q 004456 341 LFDR-VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYF 419 (752)
Q Consensus 341 l~~~-~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~ 419 (752)
+... +... ..-.++|++|++.|+..+.. ...+|.++-+.+-++-.-|+.... -.
T Consensus 428 ik~~dNLtt-----~Itsl~Fn~d~qiLAiaS~~-------------------~knalrLVHvPS~TVFsNfP~~n~-~v 482 (514)
T KOG2055|consen 428 IKTVDNLTT-----AITSLQFNHDAQILAIASRV-------------------KKNALRLVHVPSCTVFSNFPTSNT-KV 482 (514)
T ss_pred hhhhhhhhe-----eeeeeeeCcchhhhhhhhhc-------------------cccceEEEeccceeeeccCCCCCC-cc
Confidence 3221 1111 22237799999999988732 233455666554443333332211 11
Q ss_pred hceeeeecCCcceecccCCCEEEEEE
Q 004456 420 ETAVALVFGQGEEDINLNQLKILTSK 445 (752)
Q Consensus 420 ~~~~~~~~~~~~~~~s~d~~~l~~~~ 445 (752)
-.+.+ .+|||.|+++++..
T Consensus 483 g~vtc-------~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 483 GHVTC-------MAFSPNSGYLAVGN 501 (514)
T ss_pred cceEE-------EEecCCCceEEeec
Confidence 11223 58999999998754
No 168
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.13 E-value=6.1e-09 Score=103.26 Aligned_cols=232 Identities=15% Similarity=0.135 Sum_probs=147.0
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceec-cCCCCccccccccceEEecCCcEEEEEecCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL-FESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~l-t~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~ 110 (752)
-+...+|+-+|.||+-. +-...+-++|..+|+.++. +.+.. ..-+..|-.+.++.-.. .
T Consensus 278 PI~slKWnk~G~yilS~----------~vD~ttilwd~~~g~~~q~f~~~s~-----~~lDVdW~~~~~F~ts~-t---- 337 (524)
T KOG0273|consen 278 PIFSLKWNKKGTYILSG----------GVDGTTILWDAHTGTVKQQFEFHSA-----PALDVDWQSNDEFATSS-T---- 337 (524)
T ss_pred ceEEEEEcCCCCEEEec----------cCCccEEEEeccCceEEEeeeeccC-----CccceEEecCceEeecC-C----
Confidence 37889999999999985 3346777888888886554 33332 11356898777744322 1
Q ss_pred CCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc--CCCccccCCc-cceeccccCCCCc
Q 004456 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL--DGTAKDFGTP-AVYTAVEPSPDQK 187 (752)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~--~G~~~~l~~~-~~~~~~~~SpDGk 187 (752)
.+.|+++.+ ++....+..+ +.+..+.|.|.|+
T Consensus 338 ---------------------------------------------d~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~ 372 (524)
T KOG0273|consen 338 ---------------------------------------------DGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS 372 (524)
T ss_pred ---------------------------------------------CceEEEEEecCCCcceeeecccCceEEEEECCCCc
Confidence 134555555 5555666556 9999999999999
Q ss_pred eEEEEecccCccccccccCccccEEEEecCCc-eeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCC
Q 004456 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (752)
Q Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~ 266 (752)
.|+-.+.+. .+.+|..... -...|... .-.+..+.|||+|.- ......+
T Consensus 373 LLaS~SdD~-------------TlkiWs~~~~~~~~~l~~H-------------skei~t~~wsp~g~v----~~n~~~~ 422 (524)
T KOG0273|consen 373 LLASCSDDG-------------TLKIWSMGQSNSVHDLQAH-------------SKEIYTIKWSPTGPV----TSNPNMN 422 (524)
T ss_pred eEEEecCCC-------------eeEeeecCCCcchhhhhhh-------------ccceeeEeecCCCCc----cCCCcCC
Confidence 998887663 7888875422 22222222 223567899999862 1111111
Q ss_pred CCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceecccccc
Q 004456 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVF 346 (752)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 346 (752)
...........+.+||+. .+.....++.....+..++|||+|+++++++ ....+.+++..++ +...-....
T Consensus 423 ~~l~sas~dstV~lwdv~--~gv~i~~f~kH~~pVysvafS~~g~ylAsGs----~dg~V~iws~~~~--~l~~s~~~~- 493 (524)
T KOG0273|consen 423 LMLASASFDSTVKLWDVE--SGVPIHTLMKHQEPVYSVAFSPNGRYLASGS----LDGCVHIWSTKTG--KLVKSYQGT- 493 (524)
T ss_pred ceEEEeecCCeEEEEEcc--CCceeEeeccCCCceEEEEecCCCcEEEecC----CCCeeEeccccch--heeEeecCC-
Confidence 111122344578888884 3444556778888999999999999999987 3345778877764 111111111
Q ss_pred ccccCCCCCCceeeCCCCCeEEEeeee
Q 004456 347 ENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (752)
Q Consensus 347 ~~~~~~~~~p~~~~s~dg~~l~~~~~~ 373 (752)
.+...++|+.+|.+|.....+
T Consensus 494 ------~~Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 494 ------GGIFELCWNAAGDKLGACASD 514 (524)
T ss_pred ------CeEEEEEEcCCCCEEEEEecC
Confidence 133458899999998777643
No 169
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.12 E-value=3.3e-09 Score=125.90 Aligned_cols=231 Identities=14% Similarity=0.129 Sum_probs=134.7
Q ss_pred EEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCC-CchhHHHHHhCCcEEEecCCCCCCCCCCC
Q 004456 494 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGM-TPTSSLIFLARRFAVLAGPSIPIIGEGDK 572 (752)
Q Consensus 494 ~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~G~~v~~~~~~~~~g~g~~ 572 (752)
.+..+.|.|.......+...|.||++||.+.. ...|... ...+...|+++||.|++++. |....
T Consensus 48 ~~~l~~y~~~~~~~~~~~~~~plllvhg~~~~-----------~~~~d~~~~~s~v~~L~~~g~~v~~~d~----G~~~~ 112 (994)
T PRK07868 48 MYRLRRYFPPDNRPGQPPVGPPVLMVHPMMMS-----------ADMWDVTRDDGAVGILHRAGLDPWVIDF----GSPDK 112 (994)
T ss_pred cEEEEEeCCCCccccccCCCCcEEEECCCCCC-----------ccceecCCcccHHHHHHHCCCEEEEEcC----CCCCh
Confidence 56777777754321111125889999995321 1222211 11135678899999999652 22111
Q ss_pred C-CC-chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCceeEEEEccCCCCCCCC-----c-
Q 004456 573 L-PN-DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-PHLFCCGIARSGSYNKTLT-----P- 643 (752)
Q Consensus 573 ~-~~-~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~-p~~~~~~v~~~~~~~~~~~-----~- 643 (752)
. .. ...+.+.+..+.++++.+++.. .+++.++||||||.+++.+++.+ +++++.+|+++...|.... +
T Consensus 113 ~~~~~~~~l~~~i~~l~~~l~~v~~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~~~~~~~~~~ 189 (994)
T PRK07868 113 VEGGMERNLADHVVALSEAIDTVKDVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTLAALPMGIPA 189 (994)
T ss_pred hHcCccCCHHHHHHHHHHHHHHHHHhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccCCCCcccchh
Confidence 1 11 1123333445666666665543 25799999999999999888754 5588988876655432100 0
Q ss_pred ----c-------------Ccccc-------------------------c--cch--------hhhHH-------------
Q 004456 644 ----F-------------GFQTE-------------------------F--RTL--------WEATN------------- 658 (752)
Q Consensus 644 ----~-------------~~~~~-------------------------~--~~~--------~~~~~------------- 658 (752)
. ..+.. . ... +....
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~p~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~w~~~~g~~~~~~ 269 (994)
T PRK07868 190 GLAAAAADFMADHVFNRLDIPGWMARTGFQMLDPVKTAKARVDFLRQLHDREALLPREQQRRFLESEGWIAWSGPAISEL 269 (994)
T ss_pred hhhhcccccchhhhhhcCCCCHHHHHHHHHhcChhHHHHHHHHHHHhcCchhhhccchhhHhHHHHhhccccchHHHHHH
Confidence 0 00000 0 000 00000
Q ss_pred --HHHhcChh-----------hhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEE-EEeCCCCccC--Cc
Q 004456 659 --VYIEMSPI-----------THANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRL-VLLPFEHHVY--AA 722 (752)
Q Consensus 659 --~~~~~~~~-----------~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~H~~--~~ 722 (752)
.+...+.+ ..++++++|+|+++|++|.++| +..++.+.+.+.. .++ .+++++||.. .+
T Consensus 270 ~~~~~~~n~~~~g~~~~~~~~~~L~~i~~P~L~i~G~~D~ivp--~~~~~~l~~~i~~----a~~~~~~~~~GH~g~~~g 343 (994)
T PRK07868 270 LKQFIAHNRMMTGGFAINGQMVTLADITCPVLAFVGEVDDIGQ--PASVRGIRRAAPN----AEVYESLIRAGHFGLVVG 343 (994)
T ss_pred HHHHHHhCcccCceEEECCEEcchhhCCCCEEEEEeCCCCCCC--HHHHHHHHHhCCC----CeEEEEeCCCCCEeeeec
Confidence 00000000 1256788999999999999999 8888888665532 345 5678999973 34
Q ss_pred cccHHHHHHHHHHHHHHHhcCCCCCC
Q 004456 723 RENVMHVIWETDRWLQKYCLSNTSDG 748 (752)
Q Consensus 723 ~~~~~~~~~~~~~fl~~~l~~~~~~~ 748 (752)
...+.+..+.+.+||.++=+..+.+.
T Consensus 344 ~~a~~~~wp~i~~wl~~~~~~~~~~~ 369 (994)
T PRK07868 344 SRAAQQTWPTVADWVKWLEGDGDKPE 369 (994)
T ss_pred hhhhhhhChHHHHHHHHhccCCCCCc
Confidence 45567889999999999866555444
No 170
>PRK13616 lipoprotein LpqB; Provisional
Probab=99.11 E-value=4.6e-09 Score=114.83 Aligned_cols=178 Identities=16% Similarity=0.211 Sum_probs=111.1
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (752)
.+..|++||||+++||+..... .+.++..+||+.+. +++.+++|.... ...+.|||||++|+|........
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~--~~~d~~s~Lwv~~~-gg~~~~lt~g~~------~t~PsWspDG~~lw~v~dg~~~~ 421 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGR--GAPDPASSLWVGPL-GGVAVQVLEGHS------LTRPSWSLDADAVWVVVDGNTVV 421 (591)
T ss_pred CcccceECCCCCEEEEEEeecC--CCCCcceEEEEEeC-CCcceeeecCCC------CCCceECCCCCceEEEecCcceE
Confidence 6789999999999999986321 12245679999996 566688876542 46789999999999985321100
Q ss_pred CCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCC-CccccCCccceeccccCCCCceEE
Q 004456 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTPAVYTAVEPSPDQKYVL 190 (752)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G-~~~~l~~~~~~~~~~~SpDGk~l~ 190 (752)
.... ....++||++++++ +.++ .-.+.+..+.|||||++|+
T Consensus 422 -------------~v~~------------------------~~~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA 463 (591)
T PRK13616 422 -------------RVIR------------------------DPATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAA 463 (591)
T ss_pred -------------EEec------------------------cCCCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEE
Confidence 0000 00126899999955 6655 2236799999999999999
Q ss_pred EEecccCccccccccCccccEEE---EecCCceeEEecCCCCCCCCCcccCCc-cccccceeeeeCCCceEEEEEeccCC
Q 004456 191 ITSMHRPYSYKVPCARFSQKVQV---WTTDGKLVRELCDLPPAEDIPVCYNSV-REGMRSISWRADKPSTLYWVEAQDRG 266 (752)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~---~d~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~wspDG~~~l~~~~~~~~~ 266 (752)
|.... ++++ ...+++. +.++... .+... .....++.|.+|++ |+.... +
T Consensus 464 ~i~~g--------------~v~Va~Vvr~~~G~-~~l~~~~-------~l~~~l~~~~~~l~W~~~~~--L~V~~~-~-- 516 (591)
T PRK13616 464 MIIGG--------------KVYLAVVEQTEDGQ-YALTNPR-------EVGPGLGDTAVSLDWRTGDS--LVVGRS-D-- 516 (591)
T ss_pred EEECC--------------EEEEEEEEeCCCCc-eeecccE-------EeecccCCccccceEecCCE--EEEEec-C--
Confidence 98632 4555 4444454 4443221 00000 01135689999998 554431 1
Q ss_pred CCccccCccceEEeccCCCCCCCCCeE
Q 004456 267 DANVEVSPRDIIYTQPAEPAEGEKPEI 293 (752)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~ 293 (752)
....++.+.+ +|.....
T Consensus 517 -------~~~~v~~v~v---DG~~~~~ 533 (591)
T PRK13616 517 -------PEHPVWYVNL---DGSNSDA 533 (591)
T ss_pred -------CCCceEEEec---CCccccc
Confidence 1225777787 5544443
No 171
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.11 E-value=3e-09 Score=116.31 Aligned_cols=117 Identities=13% Similarity=0.137 Sum_probs=75.0
Q ss_pred cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCC
Q 004456 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (752)
Q Consensus 175 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~ 254 (752)
..+.++.||||+..|+-.+.++ .+.+|+..+-+........ ..-+.+++|.|-|+
T Consensus 130 ~DV~Dv~Wsp~~~~lvS~s~Dn-------------sViiwn~~tF~~~~vl~~H------------~s~VKGvs~DP~Gk 184 (942)
T KOG0973|consen 130 SDVLDVNWSPDDSLLVSVSLDN-------------SVIIWNAKTFELLKVLRGH------------QSLVKGVSWDPIGK 184 (942)
T ss_pred CccceeccCCCccEEEEecccc-------------eEEEEccccceeeeeeecc------------cccccceEECCccC
Confidence 7888999999999999987774 7999998876433322221 11156889999999
Q ss_pred ceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeec------ccceeeeeeecCCceEEEeeecccCceeEEE
Q 004456 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL------DLRFRSVSWCDDSLALVNETWYKTSQTRTWL 328 (752)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~------~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~ 328 (752)
+ ++..+ ....|.+|++.+ -+..+.++.. ......++|||||++|+....-++....+-+
T Consensus 185 y-~ASqs------------dDrtikvwrt~d--w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 185 Y-FASQS------------DDRTLKVWRTSD--WGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred e-eeeec------------CCceEEEEEccc--ceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence 8 55443 222556666532 2344444432 2346778999999999887533333334444
Q ss_pred EcC
Q 004456 329 VCP 331 (752)
Q Consensus 329 ~~~ 331 (752)
++-
T Consensus 250 ieR 252 (942)
T KOG0973|consen 250 IER 252 (942)
T ss_pred Eec
Confidence 443
No 172
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=1.9e-08 Score=94.87 Aligned_cols=280 Identities=13% Similarity=0.168 Sum_probs=154.8
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccC--cc-eeccCCCCccccccccceEEecCCcEEEEEecCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG--EA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g--~~-~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~ 108 (752)
.++...||.|||+||-.+. ...|.+++++.= +. |.+-..-... -.....|+||-+.+++...
T Consensus 88 ~vt~~~FsSdGK~lat~~~----------Dr~Ir~w~~~DF~~~eHr~~R~nve~d---hpT~V~FapDc~s~vv~~~-- 152 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATISG----------DRSIRLWDVRDFENKEHRCIRQNVEYD---HPTRVVFAPDCKSVVVSVK-- 152 (420)
T ss_pred ceeeeEEcCCCceeEEEeC----------CceEEEEecchhhhhhhhHhhccccCC---CceEEEECCCcceEEEEEc--
Confidence 5788999999999999753 356666666541 22 2221111111 1235689999998888743
Q ss_pred CCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc----CCCcc----ccCC------c
Q 004456 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL----DGTAK----DFGT------P 174 (752)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~----~G~~~----~l~~------~ 174 (752)
++ ..|+++-+ +|... .+.. +
T Consensus 153 ~g----------------------------------------------~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh 186 (420)
T KOG2096|consen 153 RG----------------------------------------------NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKH 186 (420)
T ss_pred cC----------------------------------------------CEEEEEEeeecccCCCCcccccccccccchhc
Confidence 11 34444443 33211 1110 0
Q ss_pred -cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCC
Q 004456 175 -AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (752)
Q Consensus 175 -~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG 253 (752)
-.+.++-..-.+++|.-.+.+ .+|.+|++.|.....+...... -...+.||||
T Consensus 187 ~v~~i~iGiA~~~k~imsas~d-------------t~i~lw~lkGq~L~~idtnq~~-------------n~~aavSP~G 240 (420)
T KOG2096|consen 187 QVDIINIGIAGNAKYIMSASLD-------------TKICLWDLKGQLLQSIDTNQSS-------------NYDAAVSPDG 240 (420)
T ss_pred ccceEEEeecCCceEEEEecCC-------------CcEEEEecCCceeeeecccccc-------------ccceeeCCCC
Confidence 233345555556666665544 3899999997765554433322 2246999999
Q ss_pred CceEEEEEeccCCCCccccCccceEEeccCCCCCC--CCCeE---EeecccceeeeeeecCCceEEEeeecccCceeEEE
Q 004456 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG--EKPEI---LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWL 328 (752)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~---l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~ 328 (752)
+. |+...+.+ .-.+|-+-. ..+| ++... |-.....+..++||+++.+++..+ .+ +..+||-
T Consensus 241 RF-ia~~gFTp----------DVkVwE~~f-~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS-kD-G~wriwd 306 (420)
T KOG2096|consen 241 RF-IAVSGFTP----------DVKVWEPIF-TKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS-KD-GKWRIWD 306 (420)
T ss_pred cE-EEEecCCC----------CceEEEEEe-ccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe-cC-CcEEEee
Confidence 97 66665432 112222111 1022 12222 223344678899999999998877 33 4456777
Q ss_pred EcCCCCC-ccceeccccccccccCCCCCC-ceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCc
Q 004456 329 VCPGSKD-VAPRVLFDRVFENVYSDPGSP-MMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGS 406 (752)
Q Consensus 329 ~~~~~~~-~~~~~l~~~~~~~~~~~~~~p-~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~ 406 (752)
.|+.-.. ..++.|-.+......+ .+.| .+.-||.|+.|+..... .|.++..++|+
T Consensus 307 tdVrY~~~qDpk~Lk~g~~pl~aa-g~~p~RL~lsP~g~~lA~s~gs----------------------~l~~~~se~g~ 363 (420)
T KOG2096|consen 307 TDVRYEAGQDPKILKEGSAPLHAA-GSEPVRLELSPSGDSLAVSFGS----------------------DLKVFASEDGK 363 (420)
T ss_pred ccceEecCCCchHhhcCCcchhhc-CCCceEEEeCCCCcEEEeecCC----------------------ceEEEEcccCc
Confidence 7765321 2234443332211111 1222 45679999999888621 37788877776
Q ss_pred eeEEeeccchhhhhceeeeecCCcceecccCCCEEEEEE
Q 004456 407 KERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSK 445 (752)
Q Consensus 407 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~ 445 (752)
...-...-. ..-...++|++||++++-+.
T Consensus 364 ~~~~~e~~h----------~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 364 DYPELEDIH----------STTISSISYSSDGKYIATCG 392 (420)
T ss_pred cchhHHHhh----------cCceeeEEecCCCcEEeeec
Confidence 533221110 11223469999999987764
No 173
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.11 E-value=8.1e-09 Score=110.85 Aligned_cols=132 Identities=11% Similarity=0.019 Sum_probs=81.2
Q ss_pred EEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCC-CCchhHHHHHhCCcEEEecC
Q 004456 484 MIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSG-MTPTSSLIFLARRFAVLAGP 562 (752)
Q Consensus 484 ~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~G~~v~~~~ 562 (752)
.+.+.+ ..+..+.|.|.... ...+.||++||.. .....+.- -...+...|+++||.|++++
T Consensus 166 ~VV~~~---~~~eLi~Y~P~t~~----~~~~PlLiVp~~i-----------~k~yilDL~p~~Slv~~L~~qGf~V~~iD 227 (532)
T TIGR01838 166 AVVFEN---ELFQLIQYEPTTET----VHKTPLLIVPPWI-----------NKYYILDLRPQNSLVRWLVEQGHTVFVIS 227 (532)
T ss_pred eEEEEC---CcEEEEEeCCCCCc----CCCCcEEEECccc-----------ccceeeecccchHHHHHHHHCCcEEEEEE
Confidence 455542 35777777776421 1245677888831 11111211 11246778999999999944
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH----HHHhC-CCceeEEEEccCCC
Q 004456 563 SIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAH----LLAHA-PHLFCCGIARSGSY 637 (752)
Q Consensus 563 ~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~----~~~~~-p~~~~~~v~~~~~~ 637 (752)
.+|.|.+........-..+++.++++++.+.. ..+++.++||||||.++.. +++.. +++++++++++...
T Consensus 228 ---wrgpg~s~~~~~~ddY~~~~i~~al~~v~~~~--g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~ 302 (532)
T TIGR01838 228 ---WRNPDASQADKTFDDYIRDGVIAALEVVEAIT--GEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLL 302 (532)
T ss_pred ---CCCCCcccccCChhhhHHHHHHHHHHHHHHhc--CCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCc
Confidence 44555443322222333455778888887653 3578999999999998632 34444 67899999888765
Q ss_pred C
Q 004456 638 N 638 (752)
Q Consensus 638 ~ 638 (752)
|
T Consensus 303 D 303 (532)
T TIGR01838 303 D 303 (532)
T ss_pred C
Confidence 5
No 174
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.11 E-value=6.8e-08 Score=97.77 Aligned_cols=93 Identities=14% Similarity=-0.073 Sum_probs=54.5
Q ss_pred ceeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcce-eccCCCCc
Q 004456 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDI 83 (752)
Q Consensus 5 ~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~-~lt~~~~~ 83 (752)
..|++.+... ++... ..+.|.+-+. .+||||+.|+.+...-+..........|-++|+++.+.. .+...+.-
T Consensus 27 ~~v~ViD~~~----~~v~g--~i~~G~~P~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p 99 (352)
T TIGR02658 27 TQVYTIDGEA----GRVLG--MTDGGFLPNP-VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP 99 (352)
T ss_pred ceEEEEECCC----CEEEE--EEEccCCCce-eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc
Confidence 5677777655 44322 2345555555 499999999776541111122245578999999988754 33222110
Q ss_pred c--ccccccceEEecCCcEEEEE
Q 004456 84 C--LNAVFGSFVWVNNSTLLIFT 104 (752)
Q Consensus 84 ~--~~~~~~~~~wspdg~~l~~~ 104 (752)
+ .......+..||||++|++.
T Consensus 100 ~~~~~~~~~~~~ls~dgk~l~V~ 122 (352)
T TIGR02658 100 RFLVGTYPWMTSLTPDNKTLLFY 122 (352)
T ss_pred hhhccCccceEEECCCCCEEEEe
Confidence 0 01112377999999999876
No 175
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.09 E-value=3.3e-09 Score=99.77 Aligned_cols=152 Identities=13% Similarity=0.218 Sum_probs=96.5
Q ss_pred eceeEecCCCCeEEEeecc--ccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCC
Q 004456 33 INFVSWSPDGKRIAFSVRV--DEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (752)
Q Consensus 33 ~~~~~~SPDG~~ia~~~~~--~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~ 110 (752)
.....|+|+|++|+..+.. ++......+..+||.++..+.....+.-.... .+..++|+|+|+.+++....
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~----~I~~~~WsP~g~~favi~g~--- 80 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEG----PIHDVAWSPNGNEFAVIYGS--- 80 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCC----ceEEEEECcCCCEEEEEEcc---
Confidence 3457899999999998772 21111223457788888777666555322221 36789999999998766210
Q ss_pred CCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCCCccccCCccceeccccCCCCceEE
Q 004456 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVL 190 (752)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G~~~~l~~~~~~~~~~~SpDGk~l~ 190 (752)
....+.+++++++...-........+.|||+|++|+
T Consensus 81 --------------------------------------------~~~~v~lyd~~~~~i~~~~~~~~n~i~wsP~G~~l~ 116 (194)
T PF08662_consen 81 --------------------------------------------MPAKVTLYDVKGKKIFSFGTQPRNTISWSPDGRFLV 116 (194)
T ss_pred --------------------------------------------CCcccEEEcCcccEeEeecCCCceEEEECCCCCEEE
Confidence 013566666655322222224556799999999999
Q ss_pred EEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEE
Q 004456 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (752)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~ 260 (752)
+....+ ..+.+.+||.+..+........ ....+.|||||++ ++..
T Consensus 117 ~~g~~n----------~~G~l~~wd~~~~~~i~~~~~~--------------~~t~~~WsPdGr~-~~ta 161 (194)
T PF08662_consen 117 LAGFGN----------LNGDLEFWDVRKKKKISTFEHS--------------DATDVEWSPDGRY-LATA 161 (194)
T ss_pred EEEccC----------CCcEEEEEECCCCEEeeccccC--------------cEEEEEEcCCCCE-EEEE
Confidence 986543 2357999999855443322221 1457899999998 4444
No 176
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.08 E-value=2.7e-09 Score=112.57 Aligned_cols=206 Identities=12% Similarity=0.134 Sum_probs=135.7
Q ss_pred CccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCcccccc
Q 004456 167 TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMR 245 (752)
Q Consensus 167 ~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 245 (752)
..+.+..+ +.+.+..||||-++|+-.+.+. .+.+|.+++.........+ ..| ++
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~-------------svRLWsl~t~s~~V~y~GH---~~P---------Vw 497 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDS-------------SVRLWSLDTWSCLVIYKGH---LAP---------VW 497 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCc-------------ceeeeecccceeEEEecCC---Ccc---------ee
Confidence 45556666 8899999999999998876553 7889999887655554432 223 67
Q ss_pred ceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCcee
Q 004456 246 SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTR 325 (752)
Q Consensus 246 ~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~ 325 (752)
.+.|+|-|- ||++.. ++ ...++|-.|- ....+.+......+..+.|.|++.+++.++ ....
T Consensus 498 dV~F~P~Gy---YFatas--~D------~tArLWs~d~----~~PlRifaghlsDV~cv~FHPNs~Y~aTGS----sD~t 558 (707)
T KOG0263|consen 498 DVQFAPRGY---YFATAS--HD------QTARLWSTDH----NKPLRIFAGHLSDVDCVSFHPNSNYVATGS----SDRT 558 (707)
T ss_pred eEEecCCce---EEEecC--CC------ceeeeeeccc----CCchhhhcccccccceEEECCcccccccCC----CCce
Confidence 889999984 566542 11 1124555443 223344556667788899999999998875 3334
Q ss_pred EEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCC
Q 004456 326 TWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTG 405 (752)
Q Consensus 326 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g 405 (752)
+.++|+.++ ...+++.+....+- .+++||+|++|+-...++ .|.+||+.+|
T Consensus 559 VRlWDv~~G--~~VRiF~GH~~~V~------al~~Sp~Gr~LaSg~ed~---------------------~I~iWDl~~~ 609 (707)
T KOG0263|consen 559 VRLWDVSTG--NSVRIFTGHKGPVT------ALAFSPCGRYLASGDEDG---------------------LIKIWDLANG 609 (707)
T ss_pred EEEEEcCCC--cEEEEecCCCCceE------EEEEcCCCceEeecccCC---------------------cEEEEEcCCC
Confidence 666676664 34566654433222 267999999998886332 5999999998
Q ss_pred ceeEEeeccchhhhhceeeeecCCcceecccCCCEEEEEEecCCCCcEEEEEECC
Q 004456 406 SKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWP 460 (752)
Q Consensus 406 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~ 460 (752)
+......... +-...++||.||..|+....+ -.|.+||+.
T Consensus 610 ~~v~~l~~Ht-----------~ti~SlsFS~dg~vLasgg~D----nsV~lWD~~ 649 (707)
T KOG0263|consen 610 SLVKQLKGHT-----------GTIYSLSFSRDGNVLASGGAD----NSVRLWDLT 649 (707)
T ss_pred cchhhhhccc-----------CceeEEEEecCCCEEEecCCC----CeEEEEEch
Confidence 7644433322 222345899999988765433 247888865
No 177
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=99.07 E-value=2.8e-10 Score=100.23 Aligned_cols=173 Identities=18% Similarity=0.177 Sum_probs=112.0
Q ss_pred CCcEEEecCCCCCCCCCCCCCCchh--HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEE
Q 004456 554 RRFAVLAGPSIPIIGEGDKLPNDRF--VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 631 (752)
Q Consensus 554 ~G~~v~~~~~~~~~g~g~~~~~~~~--~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v 631 (752)
.-+.|++ .+-+|||.+-++..- .+-..+|...+++-++... .+++-|+|+|-||..|+.+|+++++.+...|
T Consensus 70 l~~Tiva---wDPpGYG~SrPP~Rkf~~~ff~~Da~~avdLM~aLk---~~~fsvlGWSdGgiTalivAak~~e~v~rmi 143 (277)
T KOG2984|consen 70 LQVTIVA---WDPPGYGTSRPPERKFEVQFFMKDAEYAVDLMEALK---LEPFSVLGWSDGGITALIVAAKGKEKVNRMI 143 (277)
T ss_pred CceEEEE---ECCCCCCCCCCCcccchHHHHHHhHHHHHHHHHHhC---CCCeeEeeecCCCeEEEEeeccChhhhhhhe
Confidence 3377788 455688888666543 3345788889998888754 4899999999999999999999999888777
Q ss_pred EccCCCCCCCC-ccC---------ccccccchhh-------hHHHHHhc----Ch----------hhhcCCCCCCEEEEE
Q 004456 632 ARSGSYNKTLT-PFG---------FQTEFRTLWE-------ATNVYIEM----SP----------ITHANKIKKPILIIH 680 (752)
Q Consensus 632 ~~~~~~~~~~~-~~~---------~~~~~~~~~~-------~~~~~~~~----~~----------~~~~~~~~~P~li~~ 680 (752)
+..+..-.... .+. |......+++ ....|+++ .. -..+.+++||+||+|
T Consensus 144 iwga~ayvn~~~~ma~kgiRdv~kWs~r~R~P~e~~Yg~e~f~~~wa~wvD~v~qf~~~~dG~fCr~~lp~vkcPtli~h 223 (277)
T KOG2984|consen 144 IWGAAAYVNHLGAMAFKGIRDVNKWSARGRQPYEDHYGPETFRTQWAAWVDVVDQFHSFCDGRFCRLVLPQVKCPTLIMH 223 (277)
T ss_pred eecccceecchhHHHHhchHHHhhhhhhhcchHHHhcCHHHHHHHHHHHHHHHHHHhhcCCCchHhhhcccccCCeeEee
Confidence 76654211000 000 0000001110 01111111 00 123578899999999
Q ss_pred eCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHHH
Q 004456 681 GEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 739 (752)
Q Consensus 681 G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 739 (752)
|+.|+.|+ -.++- +...+ ..-.++.++|.+.|.+. ......+...+.+||.+
T Consensus 224 G~kDp~~~--~~hv~-fi~~~---~~~a~~~~~peGkHn~h-Lrya~eFnklv~dFl~~ 275 (277)
T KOG2984|consen 224 GGKDPFCG--DPHVC-FIPVL---KSLAKVEIHPEGKHNFH-LRYAKEFNKLVLDFLKS 275 (277)
T ss_pred CCcCCCCC--CCCcc-chhhh---cccceEEEccCCCccee-eechHHHHHHHHHHHhc
Confidence 99999987 44432 22322 23358899999999886 44567788889999875
No 178
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=99.07 E-value=5.9e-09 Score=102.84 Aligned_cols=218 Identities=16% Similarity=0.079 Sum_probs=125.3
Q ss_pred EEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEe--cCCCCCCCC--
Q 004456 494 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA--GPSIPIIGE-- 569 (752)
Q Consensus 494 ~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~--~~~~~~~g~-- 569 (752)
..+..+++|...++ ...|++|.+.|.| . +.|.......+.-|++.|++.+. +++++.+--
T Consensus 76 ~a~~~~~~P~~~~~---~~rp~~IhLagTG------------D-h~f~rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~ 139 (348)
T PF09752_consen 76 TARFQLLLPKRWDS---PYRPVCIHLAGTG------------D-HGFWRRRRLMARPLLKEGIASLILENPYYGQRKPKD 139 (348)
T ss_pred heEEEEEECCcccc---CCCceEEEecCCC------------c-cchhhhhhhhhhHHHHcCcceEEEecccccccChhH
Confidence 45566677876522 2379999999853 1 33333233347788888999888 444322110
Q ss_pred --CCCCCC-ch---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCC-C-
Q 004456 570 --GDKLPN-DR---FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT-L- 641 (752)
Q Consensus 570 --g~~~~~-~~---~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~-~- 641 (752)
+..... .+ .....+.+....+.|+.++++ .++++.|.||||+||.++++..|..+..+..+++.+... .
T Consensus 140 Q~~s~l~~VsDl~~~g~~~i~E~~~Ll~Wl~~~G~---~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs~vFt 216 (348)
T PF09752_consen 140 QRRSSLRNVSDLFVMGRATILESRALLHWLEREGY---GPLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSASVVFT 216 (348)
T ss_pred hhcccccchhHHHHHHhHHHHHHHHHHHHHHhcCC---CceEEEEechhHhhHHhhhhcCCCceeEEEeecccCCCcchh
Confidence 000000 01 123557888889999999975 699999999999999999999998776666655432200 0
Q ss_pred -------CccCcc-cc------------------cc------chhhhHH----HHHhcChhhhcCCCC-----CCEEEEE
Q 004456 642 -------TPFGFQ-TE------------------FR------TLWEATN----VYIEMSPITHANKIK-----KPILIIH 680 (752)
Q Consensus 642 -------~~~~~~-~~------------------~~------~~~~~~~----~~~~~~~~~~~~~~~-----~P~li~~ 680 (752)
..|..- .+ .. ..+.+.+ .........++.++. -.+.++.
T Consensus 217 ~Gvls~~i~W~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~m~~~md~~T~l~nf~~P~dp~~ii~V~ 296 (348)
T PF09752_consen 217 EGVLSNSINWDALEKQFEDTVYEEEISDIPAQNKSLPLDSMEERRRDREALRFMRGVMDSFTHLTNFPVPVDPSAIIFVA 296 (348)
T ss_pred hhhhhcCCCHHHHHHHhcccchhhhhcccccCcccccchhhccccchHHHHHHHHHHHHhhccccccCCCCCCCcEEEEE
Confidence 000000 00 00 0000000 111112233344443 3488999
Q ss_pred eCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHH
Q 004456 681 GEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 737 (752)
Q Consensus 681 G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 737 (752)
+++|..|| ..+...+.+.+. .+++.++++ ||.-...-+...+.+.|.+=|
T Consensus 297 A~~DaYVP--r~~v~~Lq~~WP----GsEvR~l~g-GHVsA~L~~q~~fR~AI~Daf 346 (348)
T PF09752_consen 297 AKNDAYVP--RHGVLSLQEIWP----GSEVRYLPG-GHVSAYLLHQEAFRQAIYDAF 346 (348)
T ss_pred ecCceEec--hhhcchHHHhCC----CCeEEEecC-CcEEEeeechHHHHHHHHHHh
Confidence 99999998 777665655554 347888877 897443444445555565544
No 179
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.07 E-value=1.5e-09 Score=105.99 Aligned_cols=187 Identities=14% Similarity=0.105 Sum_probs=127.3
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (752)
++...+|.|+|++|+-++ .+..-.++|+.+++...+-.+... ++.+++|.|||..++-...+
T Consensus 263 RVs~VafHPsG~~L~Tas----------fD~tWRlWD~~tk~ElL~QEGHs~----~v~~iaf~~DGSL~~tGGlD---- 324 (459)
T KOG0272|consen 263 RVSRVAFHPSGKFLGTAS----------FDSTWRLWDLETKSELLLQEGHSK----GVFSIAFQPDGSLAATGGLD---- 324 (459)
T ss_pred hheeeeecCCCceeeecc----------cccchhhcccccchhhHhhccccc----ccceeEecCCCceeeccCcc----
Confidence 788999999999999874 345556778888877665433322 57899999999977643111
Q ss_pred CCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCccc-cCCc-cceeccccCCCCce
Q 004456 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FGTP-AVYTAVEPSPDQKY 188 (752)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~~-l~~~-~~~~~~~~SpDGk~ 188 (752)
.--.+||+ +|.... +..+ ..+.++.|||+|-+
T Consensus 325 ---------------------------------------------~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~ 359 (459)
T KOG0272|consen 325 ---------------------------------------------SLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYH 359 (459)
T ss_pred ---------------------------------------------chhheeecccCcEEEEecccccceeeEeECCCceE
Confidence 11234566 664333 3334 78889999999999
Q ss_pred EEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCC
Q 004456 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (752)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~ 268 (752)
|+-.+.++ .+.+||+..... +...+ ++..-+..+.++|++.+ ++.++.
T Consensus 360 lATgs~Dn-------------t~kVWDLR~r~~--ly~ip----------AH~nlVS~Vk~~p~~g~-fL~Tas------ 407 (459)
T KOG0272|consen 360 LATGSSDN-------------TCKVWDLRMRSE--LYTIP----------AHSNLVSQVKYSPQEGY-FLVTAS------ 407 (459)
T ss_pred EeecCCCC-------------cEEEeeeccccc--ceecc----------cccchhhheEecccCCe-EEEEcc------
Confidence 99887774 788999986643 22221 12223668999996555 333332
Q ss_pred ccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecc
Q 004456 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK 320 (752)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~ 320 (752)
..+.+-+|... ..+..+.|...++.+.++..|+||+.|+..+.+.
T Consensus 408 -----yD~t~kiWs~~--~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DR 452 (459)
T KOG0272|consen 408 -----YDNTVKIWSTR--TWSPLKSLAGHEGKVISLDISPDSQAIATSSFDR 452 (459)
T ss_pred -----cCcceeeecCC--CcccchhhcCCccceEEEEeccCCceEEEeccCc
Confidence 33355555542 3355677888889999999999999999887544
No 180
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.06 E-value=1e-08 Score=86.94 Aligned_cols=168 Identities=15% Similarity=0.098 Sum_probs=103.3
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEe--cCCCCCCCCCCCCCCchhHHHHHHHHHHHH
Q 004456 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA--GPSIPIIGEGDKLPNDRFVEQLVSSAEAAV 590 (752)
Q Consensus 513 ~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~--~~~~~~~g~g~~~~~~~~~~~~~~d~~~~~ 590 (752)
--+||+.||.|.. +-+......+..|+.+|+.|.. .+|+..+-.|+..++.... ........++
T Consensus 14 ~~tilLaHGAGas-------------mdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg~rkPp~~~~-t~~~~~~~~~ 79 (213)
T COG3571 14 PVTILLAHGAGAS-------------MDSTSMTAVAAALARRGWLVARFEFPYMAARRTGRRKPPPGSG-TLNPEYIVAI 79 (213)
T ss_pred CEEEEEecCCCCC-------------CCCHHHHHHHHHHHhCceeEEEeecchhhhccccCCCCcCccc-cCCHHHHHHH
Confidence 3578889996421 1112222457788999999988 4555444455443332211 1122233444
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCccccccchhhhHHHHHhcChhhhcC
Q 004456 591 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHAN 670 (752)
Q Consensus 591 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (752)
-.|.+. .+..++++-|+||||-++.+++..-...+.+.+++.=.+ .+.+.+.. -...++.
T Consensus 80 aql~~~--l~~gpLi~GGkSmGGR~aSmvade~~A~i~~L~clgYPf----hppGKPe~--------------~Rt~HL~ 139 (213)
T COG3571 80 AQLRAG--LAEGPLIIGGKSMGGRVASMVADELQAPIDGLVCLGYPF----HPPGKPEQ--------------LRTEHLT 139 (213)
T ss_pred HHHHhc--ccCCceeeccccccchHHHHHHHhhcCCcceEEEecCcc----CCCCCccc--------------chhhhcc
Confidence 445444 234589999999999999999875444467776654221 12222111 1234677
Q ss_pred CCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 004456 671 KIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYA 721 (752)
Q Consensus 671 ~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 721 (752)
.+++|+||.||+.|.+-. ..++ ... ....+++++++.++.|..-
T Consensus 140 gl~tPtli~qGtrD~fGt--r~~V---a~y--~ls~~iev~wl~~adHDLk 183 (213)
T COG3571 140 GLKTPTLITQGTRDEFGT--RDEV---AGY--ALSDPIEVVWLEDADHDLK 183 (213)
T ss_pred CCCCCeEEeecccccccC--HHHH---Hhh--hcCCceEEEEeccCccccc
Confidence 889999999999999876 4543 111 2346789999999999753
No 181
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.06 E-value=2.8e-10 Score=111.91 Aligned_cols=164 Identities=23% Similarity=0.242 Sum_probs=102.1
Q ss_pred cEEEecCCCCCCCCCCCCC--CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEc
Q 004456 556 FAVLAGPSIPIIGEGDKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIAR 633 (752)
Q Consensus 556 ~~v~~~~~~~~~g~g~~~~--~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~ 633 (752)
|.|++ .+.+|.|.+.+ ..........|+.+.++.+.+...+ +++.++||||||.+++.+++.+|++++++|+.
T Consensus 1 f~vi~---~d~rG~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl~ 75 (230)
T PF00561_consen 1 FDVIL---FDLRGFGYSSPHWDPDFPDYTTDDLAADLEALREALGI--KKINLVGHSMGGMLALEYAAQYPERVKKLVLI 75 (230)
T ss_dssp EEEEE---EECTTSTTSSSCCGSGSCTHCHHHHHHHHHHHHHHHTT--SSEEEEEETHHHHHHHHHHHHSGGGEEEEEEE
T ss_pred CEEEE---EeCCCCCCCCCCccCCcccccHHHHHHHHHHHHHHhCC--CCeEEEEECCChHHHHHHHHHCchhhcCcEEE
Confidence 56788 55667777763 1223334456677777777765433 45999999999999999999999999999999
Q ss_pred cCCC--C----CCCCcc-Ccc--------c----cc-------c---chh-----------------h------------
Q 004456 634 SGSY--N----KTLTPF-GFQ--------T----EF-------R---TLW-----------------E------------ 655 (752)
Q Consensus 634 ~~~~--~----~~~~~~-~~~--------~----~~-------~---~~~-----------------~------------ 655 (752)
++.. . ...... .+. . .. . ..+ .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (230)
T PF00561_consen 76 SPPPDLPDGLWNRIWPRGNLQGQLLDNFFNFLSDPIKPLLGRWPKQFFAYDREFVEDFLKQFQSQQYARFAETDAFDNMF 155 (230)
T ss_dssp SESSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred eeeccchhhhhHHHHhhhhhhhhHHHhhhccccccchhhhhhhhhheeeccCccccchhhccchhhhhHHHHHHHHhhhc
Confidence 8851 0 000000 000 0 00 0 000 0
Q ss_pred --hHHHHHhcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHH
Q 004456 656 --ATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIW 731 (752)
Q Consensus 656 --~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~ 731 (752)
....+...++...+.++++|+|+++|++|.++| +.....+.+.+ ...++++++++||... .+......+
T Consensus 156 ~~~~~~~~~~~~~~~l~~i~~p~l~i~~~~D~~~p--~~~~~~~~~~~----~~~~~~~~~~~GH~~~-~~~~~~~~~ 226 (230)
T PF00561_consen 156 WNALGYFSVWDPSPALSNIKVPTLIIWGEDDPLVP--PESSEQLAKLI----PNSQLVLIEGSGHFAF-LEGPDEFNE 226 (230)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSEEEEEEETTCSSSH--HHHHHHHHHHS----TTEEEEEETTCCSTHH-HHSHHHHHH
T ss_pred cccccccccccccccccccCCCeEEEEeCCCCCCC--HHHHHHHHHhc----CCCEEEECCCCChHHH-hcCHHhhhh
Confidence 000011112233456799999999999999998 77776654433 3478999999999754 333444433
No 182
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.05 E-value=4e-08 Score=106.07 Aligned_cols=229 Identities=14% Similarity=0.117 Sum_probs=145.3
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEc-ccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA-ETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~-~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~ 110 (752)
.++..+|||||++|+-. ..+..|+|+++ +.+...+...+.. ..+..+.|+|+|+.|+..+.
T Consensus 205 ~v~~~~fs~d~~~l~s~----------s~D~tiriwd~~~~~~~~~~l~gH~----~~v~~~~f~p~g~~i~Sgs~---- 266 (456)
T KOG0266|consen 205 GVSDVAFSPDGSYLLSG----------SDDKTLRIWDLKDDGRNLKTLKGHS----TYVTSVAFSPDGNLLVSGSD---- 266 (456)
T ss_pred ceeeeEECCCCcEEEEe----------cCCceEEEeeccCCCeEEEEecCCC----CceEEEEecCCCCEEEEecC----
Confidence 68999999999988775 44578999998 4444433322222 14678899999977766532
Q ss_pred CCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCcc-ccCCc-cceeccccCCCCc
Q 004456 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTP-AVYTAVEPSPDQK 187 (752)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~-~l~~~-~~~~~~~~SpDGk 187 (752)
...|.+|++ +|+.. .+..+ ..+..++|++||+
T Consensus 267 ---------------------------------------------D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~ 301 (456)
T KOG0266|consen 267 ---------------------------------------------DGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGN 301 (456)
T ss_pred ---------------------------------------------CCcEEEEeccCCeEEEeeeccCCceEEEEECCCCC
Confidence 157899999 66544 44444 8899999999999
Q ss_pred eEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCC-CcccCCccccccceeeeeCCCceEEEEEeccCC
Q 004456 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI-PVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (752)
Q Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~ 266 (752)
.|+..+.+ +.+.+||+.++....+......+.. + +....|+|+|++ ++...
T Consensus 302 ~l~s~s~d-------------~~i~vwd~~~~~~~~~~~~~~~~~~~~---------~~~~~fsp~~~~-ll~~~----- 353 (456)
T KOG0266|consen 302 LLVSASYD-------------GTIRVWDLETGSKLCLKLLSGAENSAP---------VTSVQFSPNGKY-LLSAS----- 353 (456)
T ss_pred EEEEcCCC-------------ccEEEEECCCCceeeeecccCCCCCCc---------eeEEEECCCCcE-EEEec-----
Confidence 99988654 3899999998874311111111111 2 568999999997 44442
Q ss_pred CCccccCccceEEeccCCCCCCCCCeEEeeccc---ceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccc
Q 004456 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL---RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD 343 (752)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~---~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 343 (752)
....+-+|++. .+........... ....+..+++|+.++.+.. ...|+.+++.++ .....+..
T Consensus 354 -------~d~~~~~w~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~----d~~v~~~~~~s~-~~~~~l~~ 419 (456)
T KOG0266|consen 354 -------LDRTLKLWDLR--SGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSE----DGSVYVWDSSSG-GILQRLEG 419 (456)
T ss_pred -------CCCeEEEEEcc--CCcceeeecccCCcceeEecccccCCCCeEEEEeC----CceEEEEeCCcc-chhhhhcC
Confidence 33467777772 2233333332222 3344556888998888773 335888888874 22233333
Q ss_pred cccccccCCCCCCceeeCCCCCeEEEee
Q 004456 344 RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (752)
Q Consensus 344 ~~~~~~~~~~~~p~~~~s~dg~~l~~~~ 371 (752)
+... ..-...|++...+++..+
T Consensus 420 h~~~------~~~~~~~~~~~~~~~s~s 441 (456)
T KOG0266|consen 420 HSKA------AVSDLSSHPTENLIASSS 441 (456)
T ss_pred CCCC------ceeccccCCCcCeeeecC
Confidence 3111 111245788888887776
No 183
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.03 E-value=6.8e-08 Score=90.29 Aligned_cols=225 Identities=10% Similarity=0.064 Sum_probs=139.4
Q ss_pred cEEEEEcc-CC-CccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCC
Q 004456 157 AQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (752)
Q Consensus 157 ~~i~~~~~-~G-~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 233 (752)
+.+.+||. ++ +...++-+ .++...+|||.|++|+-...++ ..-+|++.+.+.......
T Consensus 77 GklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN-------------~Csiy~ls~~d~~g~~~v------ 137 (343)
T KOG0286|consen 77 GKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDN-------------KCSIYPLSTRDAEGNVRV------ 137 (343)
T ss_pred CeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCc-------------eeEEEeccccccccccee------
Confidence 67889998 66 66666666 8999999999999999876664 556677664421110000
Q ss_pred CcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeec-CCce
Q 004456 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCD-DSLA 312 (752)
Q Consensus 234 ~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~sp-Dg~~ 312 (752)
...+..+..++.-..|-+|+. |+-.+ +...+-+||++ ++...+.+....+.+..++.+| +++.
T Consensus 138 ~r~l~gHtgylScC~f~dD~~--ilT~S------------GD~TCalWDie--~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 138 SRELAGHTGYLSCCRFLDDNH--ILTGS------------GDMTCALWDIE--TGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred eeeecCccceeEEEEEcCCCc--eEecC------------CCceEEEEEcc--cceEEEEecCCcccEEEEecCCCCCCe
Confidence 011122223355677888877 33221 44478899994 3334445567778899999999 8988
Q ss_pred EEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCC
Q 004456 313 LVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEG 392 (752)
Q Consensus 313 l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~ 392 (752)
++..+-+. ..+++|+..+ .-.+.+.+...+ ...+.+=|+|..++-.+.+.
T Consensus 202 FvSg~cD~----~aklWD~R~~--~c~qtF~ghesD------INsv~ffP~G~afatGSDD~------------------ 251 (343)
T KOG0286|consen 202 FVSGGCDK----SAKLWDVRSG--QCVQTFEGHESD------INSVRFFPSGDAFATGSDDA------------------ 251 (343)
T ss_pred EEeccccc----ceeeeeccCc--ceeEeecccccc------cceEEEccCCCeeeecCCCc------------------
Confidence 87765222 3455666553 334555555443 23377899998777665221
Q ss_pred CCCeeEEEecCCCceeEEeeccchhhhhceeeeecCCcceecccCCCEEEEEEecCCCCcEEEEEECCCC
Q 004456 393 NIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLK 462 (752)
Q Consensus 393 ~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~~g 462 (752)
...++|+.....-.+...+.. ..+...++||.-|+.|+..+...+ ..+||.-.+
T Consensus 252 ---tcRlyDlRaD~~~a~ys~~~~---------~~gitSv~FS~SGRlLfagy~d~~----c~vWDtlk~ 305 (343)
T KOG0286|consen 252 ---TCRLYDLRADQELAVYSHDSI---------ICGITSVAFSKSGRLLFAGYDDFT----CNVWDTLKG 305 (343)
T ss_pred ---eeEEEeecCCcEEeeeccCcc---------cCCceeEEEcccccEEEeeecCCc----eeEeecccc
Confidence 356778876666555543321 223334688888988877665544 777774333
No 184
>COG0627 Predicted esterase [General function prediction only]
Probab=99.03 E-value=3.2e-09 Score=105.98 Aligned_cols=137 Identities=20% Similarity=0.232 Sum_probs=98.1
Q ss_pred cEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCC---------CCccCccccccchhhh--HHHHHhcChhhhcCC
Q 004456 603 RIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT---------LTPFGFQTEFRTLWEA--TNVYIEMSPITHANK 671 (752)
Q Consensus 603 ~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~---------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 671 (752)
+.++.||||||+-|+.+|+++|++|+.+.+++|+.+.. ...++-... ...|-. ...+.+++|...+.+
T Consensus 153 ~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~~~~~~~g~~~~-~~~~G~~~~~~w~~~D~~~~~~~ 231 (316)
T COG0627 153 GRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPWGGKAF-NAMLGPDSDPAWQENDPLSLIEK 231 (316)
T ss_pred CceeEEEeccchhhhhhhhhCcchhceeccccccccccccccccccccccccCccH-HHhcCCCccccccccCchhHHHH
Confidence 89999999999999999999999999999999998755 222221111 111111 113444455444432
Q ss_pred --------------CCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHH
Q 004456 672 --------------IKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 737 (752)
Q Consensus 672 --------------~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 737 (752)
...++++.+|..|.+........+.+.+++.+.|.+..+...+++.|.+. .+...+...+.|+
T Consensus 232 l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~G~Hsw~---~w~~~l~~~~~~~ 308 (316)
T COG0627 232 LVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALRAAGIPNGVRDQPGGDHSWY---FWASQLADHLPWL 308 (316)
T ss_pred hhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHHhcCCCceeeeCCCCCcCHH---HHHHHHHHHHHHH
Confidence 44788888999997642002347889999999999989999989999854 3667888899999
Q ss_pred HHHhcC
Q 004456 738 QKYCLS 743 (752)
Q Consensus 738 ~~~l~~ 743 (752)
...|+.
T Consensus 309 a~~l~~ 314 (316)
T COG0627 309 AGALGL 314 (316)
T ss_pred HHHhcc
Confidence 988864
No 185
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=99.03 E-value=2.6e-09 Score=103.79 Aligned_cols=207 Identities=14% Similarity=0.078 Sum_probs=82.0
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCC-CCCCCCCCCCCchhHHHHHHHHHHHHH
Q 004456 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI-PIIGEGDKLPNDRFVEQLVSSAEAAVE 591 (752)
Q Consensus 513 ~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~-~~~g~g~~~~~~~~~~~~~~d~~~~~~ 591 (752)
.-+|||+.|- ..+.... .+....+..|.+.||.++.+.-. ...|+|- ..+..-++|+.++|+
T Consensus 33 ~~~llfIGGL-----------tDGl~tv-pY~~~La~aL~~~~wsl~q~~LsSSy~G~G~-----~SL~~D~~eI~~~v~ 95 (303)
T PF08538_consen 33 PNALLFIGGL-----------TDGLLTV-PYLPDLAEALEETGWSLFQVQLSSSYSGWGT-----SSLDRDVEEIAQLVE 95 (303)
T ss_dssp SSEEEEE--T-----------T--TT-S-TCHHHHHHHHT-TT-EEEEE--GGGBTTS-S-------HHHHHHHHHHHHH
T ss_pred CcEEEEECCC-----------CCCCCCC-chHHHHHHHhccCCeEEEEEEecCccCCcCc-----chhhhHHHHHHHHHH
Confidence 3579999773 2222222 22224555666789999983322 2345543 346677899999999
Q ss_pred HHHHcC--CCCCCcEEEEEeChHHHHHHHHHHhCC-----CceeEEEEccCCCCCCCCccCccc-cc-------------
Q 004456 592 EVVRRG--VADPSRIAVGGHSYGAFMTAHLLAHAP-----HLFCCGIARSGSYNKTLTPFGFQT-EF------------- 650 (752)
Q Consensus 592 ~l~~~~--~~d~~~i~l~G~S~GG~~a~~~~~~~p-----~~~~~~v~~~~~~~~~~~~~~~~~-~~------------- 650 (752)
||+... .-..++|+|||||-|-.-++.++.... ..+.++|+.+|+.|+......... +.
T Consensus 96 ylr~~~~g~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~ 175 (303)
T PF08538_consen 96 YLRSEKGGHFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIA 175 (303)
T ss_dssp HHHHHS------S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHH
T ss_pred HHHHhhccccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHH
Confidence 999873 124679999999999999999998652 569999999999986654332211 00
Q ss_pred ------------------cchhhhHHHHHhcC----------------hhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHH
Q 004456 651 ------------------RTLWEATNVYIEMS----------------PITHANKIKKPILIIHGEVDDKVGLFPMQAER 696 (752)
Q Consensus 651 ------------------~~~~~~~~~~~~~~----------------~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~ 696 (752)
..+....+.+.-.+ ....++++..|+|++.+++|..|| +..+.++
T Consensus 176 ~g~~~~~lp~~~~~~~~~~~PiTA~Rf~SL~s~~gdDD~FSSDL~de~l~~tfG~v~~plLvl~Sg~DEyvP-~~vdk~~ 254 (303)
T PF08538_consen 176 EGKGDEILPREFTPLVFYDTPITAYRFLSLASPGGDDDYFSSDLSDERLKKTFGKVSKPLLVLYSGKDEYVP-PWVDKEA 254 (303)
T ss_dssp CT-TT-GG----GGTTT-SS---HHHHHT-S-SSHHHHTHHHHHTT-HHHHTGGG--S-EEEEEE--TT-----------
T ss_pred cCCCCceeeccccccccCCCcccHHHHHhccCCCCcccccCCCCCHHHHHHHhccCCCceEEEecCCCceec-ccccccc
Confidence 00000000000000 012356778899999999999998 1234455
Q ss_pred HHHHHHhCCCc----EEEEEeCCCCccCCccccH---HHHHHHHHHHH
Q 004456 697 FFDALKGHGAL----SRLVLLPFEHHVYAARENV---MHVIWETDRWL 737 (752)
Q Consensus 697 ~~~~l~~~~~~----~~~~~~~~~~H~~~~~~~~---~~~~~~~~~fl 737 (752)
+.++++..-.+ ..-.++||++|........ +...+.+..||
T Consensus 255 Ll~rw~~a~~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl 302 (303)
T PF08538_consen 255 LLERWKAATNPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFL 302 (303)
T ss_dssp ------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 66666654222 2245899999987654332 24556666665
No 186
>PTZ00421 coronin; Provisional
Probab=99.03 E-value=1e-07 Score=102.58 Aligned_cols=188 Identities=11% Similarity=0.070 Sum_probs=106.6
Q ss_pred cEEEEEcc-CCC--------ccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEE-ec
Q 004456 157 AQLVLGSL-DGT--------AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LC 225 (752)
Q Consensus 157 ~~i~~~~~-~G~--------~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~ 225 (752)
+.|.+|++ ++. ...+..+ ..+..+.|+|++..++++.... +.|.+||+.+++... +.
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D------------gtVrIWDl~tg~~~~~l~ 165 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD------------MVVNVWDVERGKAVEVIK 165 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC------------CEEEEEECCCCeEEEEEc
Confidence 46777776 321 1223333 6778999999985444443332 379999998765433 22
Q ss_pred CCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeeccc-ceeee
Q 004456 226 DLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL-RFRSV 304 (752)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~ 304 (752)
... ..+..++|+|||+. |+..+ ..+.|.+||+. ++.....+..... .....
T Consensus 166 ~h~-------------~~V~sla~spdG~l-Latgs------------~Dg~IrIwD~r--sg~~v~tl~~H~~~~~~~~ 217 (493)
T PTZ00421 166 CHS-------------DQITSLEWNLDGSL-LCTTS------------KDKKLNIIDPR--DGTIVSSVEAHASAKSQRC 217 (493)
T ss_pred CCC-------------CceEEEEEECCCCE-EEEec------------CCCEEEEEECC--CCcEEEEEecCCCCcceEE
Confidence 221 23678999999985 44442 34478899983 2222233332222 23456
Q ss_pred eeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEc
Q 004456 305 SWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLN 384 (752)
Q Consensus 305 ~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 384 (752)
.|++++..|+...........|.++|+... ..+.......... ......|++|++.|+....+
T Consensus 218 ~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~-~~p~~~~~~d~~~-----~~~~~~~d~d~~~L~lggkg----------- 280 (493)
T PTZ00421 218 LWAKRKDLIITLGCSKSQQRQIMLWDTRKM-ASPYSTVDLDQSS-----ALFIPFFDEDTNLLYIGSKG----------- 280 (493)
T ss_pred EEcCCCCeEEEEecCCCCCCeEEEEeCCCC-CCceeEeccCCCC-----ceEEEEEcCCCCEEEEEEeC-----------
Confidence 799998877665433334456888887653 2222222111110 11123479999987776521
Q ss_pred cCCCCCCCCCCeeEEEecCCCceeEE
Q 004456 385 GRGFTPEGNIPFLDLFDINTGSKERI 410 (752)
Q Consensus 385 ~~g~~~~~~~~~l~~~d~~~g~~~~l 410 (752)
+ ..|.+||+.+++....
T Consensus 281 -D--------g~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 281 -E--------GNIRCFELMNERLTFC 297 (493)
T ss_pred -C--------CeEEEEEeeCCceEEE
Confidence 1 1488899887765433
No 187
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=99.03 E-value=6.4e-08 Score=104.16 Aligned_cols=273 Identities=17% Similarity=0.115 Sum_probs=153.0
Q ss_pred eceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 004456 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (752)
Q Consensus 33 ~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~ 112 (752)
.....+||||++|||.... .++....|+++|+++|+...-.. .. .....+.|++||+.++|+........
T Consensus 126 ~~~~~~Spdg~~la~~~s~-----~G~e~~~l~v~Dl~tg~~l~d~i-~~----~~~~~~~W~~d~~~~~y~~~~~~~~~ 195 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSD-----GGSEWYTLRVFDLETGKFLPDGI-EN----PKFSSVSWSDDGKGFFYTRFDEDQRT 195 (414)
T ss_dssp EEEEEETTTSSEEEEEEEE-----TTSSEEEEEEEETTTTEEEEEEE-EE----EESEEEEECTTSSEEEEEECSTTTSS
T ss_pred eeeeeECCCCCEEEEEecC-----CCCceEEEEEEECCCCcCcCCcc-cc----cccceEEEeCCCCEEEEEEeCccccc
Confidence 3468899999999998752 23555789999999985432110 11 01223899999999999854322110
Q ss_pred CCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCc--cccCCc---cc-eeccccCCC
Q 004456 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA--KDFGTP---AV-YTAVEPSPD 185 (752)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~--~~l~~~---~~-~~~~~~SpD 185 (752)
. ......+||+..+ ++.. ..+... .. ...+..|+|
T Consensus 196 ~--------------------------------------~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d 237 (414)
T PF02897_consen 196 S--------------------------------------DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKD 237 (414)
T ss_dssp ---------------------------------------CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TT
T ss_pred c--------------------------------------cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCc
Confidence 0 0001268999999 4422 344333 22 558889999
Q ss_pred CceEEEEecccCccccccccCccccEEEEecCCc-----eeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEE
Q 004456 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-----LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (752)
Q Consensus 186 Gk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~ 260 (752)
|++|++.+..... ..++++.++... ..+.+...... ... .....|.. +++.
T Consensus 238 ~~~l~i~~~~~~~---------~s~v~~~d~~~~~~~~~~~~~l~~~~~~-------------~~~-~v~~~~~~-~yi~ 293 (414)
T PF02897_consen 238 GRYLFISSSSGTS---------ESEVYLLDLDDGGSPDAKPKLLSPREDG-------------VEY-YVDHHGDR-LYIL 293 (414)
T ss_dssp SSEEEEEEESSSS---------EEEEEEEECCCTTTSS-SEEEEEESSSS--------------EE-EEEEETTE-EEEE
T ss_pred ccEEEEEEEcccc---------CCeEEEEeccccCCCcCCcEEEeCCCCc-------------eEE-EEEccCCE-EEEe
Confidence 9999998776521 257899998864 34444332211 111 22223555 6666
Q ss_pred EeccCCCCccccCccceEEeccCCCCCCCCCe-EEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCC-CCCccc
Q 004456 261 EAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG-SKDVAP 338 (752)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~-~~~~~~ 338 (752)
+.. ...+..|+.+++......... .+........--.++..+++|++....+ ...+|.++++. +. ..
T Consensus 294 Tn~--------~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~-~~~~l~v~~~~~~~--~~ 362 (414)
T PF02897_consen 294 TND--------DAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYREN-GSSRLRVYDLDDGK--ES 362 (414)
T ss_dssp E-T--------T-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEET-TEEEEEEEETT-TE--EE
T ss_pred eCC--------CCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEEC-CccEEEEEECCCCc--EE
Confidence 532 224558888888421111123 4454444333334556677888776444 66789999998 52 22
Q ss_pred eeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEe
Q 004456 339 RVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 411 (752)
Q Consensus 339 ~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~ 411 (752)
..+.-...+.. ..+...+++..+.|... ++ ...+.+|.+|+++++.+.+.
T Consensus 363 ~~~~~p~~g~v------~~~~~~~~~~~~~~~~s--------------s~---~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 363 REIPLPEAGSV------SGVSGDFDSDELRFSYS--------------SF---TTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEESSSSSEE------EEEES-TT-SEEEEEEE--------------ET---TEEEEEEEEETTTTCEEEEE
T ss_pred eeecCCcceEE------eccCCCCCCCEEEEEEe--------------CC---CCCCEEEEEECCCCCEEEEE
Confidence 22221111110 01224566666666652 22 34567999999999988764
No 188
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.01 E-value=9.2e-08 Score=99.39 Aligned_cols=288 Identities=10% Similarity=0.016 Sum_probs=137.8
Q ss_pred ceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcce-eccCCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 004456 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (752)
Q Consensus 34 ~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~-~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~ 112 (752)
....+||||+++..+ . ..+.|-++|+.+++.. ++ .... ...++++||||++|+.+..
T Consensus 40 ~~~~~s~Dgr~~yv~-~---------rdg~vsviD~~~~~~v~~i-~~G~-----~~~~i~~s~DG~~~~v~n~------ 97 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVA-N---------RDGTVSVIDLATGKVVATI-KVGG-----NPRGIAVSPDGKYVYVANY------ 97 (369)
T ss_dssp EEEE-TT-SSEEEEE-E---------TTSEEEEEETTSSSEEEEE-E-SS-----EEEEEEE--TTTEEEEEEE------
T ss_pred eEEEecCCCCEEEEE-c---------CCCeEEEEECCcccEEEEE-ecCC-----CcceEEEcCCCCEEEEEec------
Confidence 446799999986554 2 2358999999988743 34 2222 2457899999999987632
Q ss_pred CCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCcc-ccCCc--------cceecccc
Q 004456 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTP--------AVYTAVEP 182 (752)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~-~l~~~--------~~~~~~~~ 182 (752)
...++.++|. +.+.. .+... .....+.-
T Consensus 98 ------------------------------------------~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~ 135 (369)
T PF02239_consen 98 ------------------------------------------EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVA 135 (369)
T ss_dssp ------------------------------------------ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE
T ss_pred ------------------------------------------CCCceeEeccccccceeecccccccccccCCCceeEEe
Confidence 1146666766 33322 22211 23456677
Q ss_pred CCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEe
Q 004456 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (752)
Q Consensus 183 SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~ 262 (752)
||+....++.-.+. .++++.|............... ....+..|+|||++ ++..+.
T Consensus 136 s~~~~~fVv~lkd~------------~~I~vVdy~d~~~~~~~~i~~g-----------~~~~D~~~dpdgry-~~va~~ 191 (369)
T PF02239_consen 136 SPGRPEFVVNLKDT------------GEIWVVDYSDPKNLKVTTIKVG-----------RFPHDGGFDPDGRY-FLVAAN 191 (369)
T ss_dssp -SSSSEEEEEETTT------------TEEEEEETTTSSCEEEEEEE-------------TTEEEEEE-TTSSE-EEEEEG
T ss_pred cCCCCEEEEEEccC------------CeEEEEEeccccccceeeeccc-----------ccccccccCcccce-eeeccc
Confidence 88888777765554 4788888654322221111111 11457899999997 444432
Q ss_pred ccCCCCccccCccceEEeccCCCCCCCCCeEEeecc-c----c-------eeeeeeecCCceEEEeeecccCceeEEEEc
Q 004456 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-L----R-------FRSVSWCDDSLALVNETWYKTSQTRTWLVC 330 (752)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~-~----~-------~~~~~~spDg~~l~~~~~~~~~~~~l~~~~ 330 (752)
..+.+-++|. +.+....+.... . . ...+.|+-.+............ .+.+++
T Consensus 192 -----------~sn~i~viD~---~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~--~v~v~d 255 (369)
T PF02239_consen 192 -----------GSNKIAVIDT---KTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTD--PVSVHD 255 (369)
T ss_dssp -----------GGTEEEEEET---TTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE----TTT-ST
T ss_pred -----------ccceeEEEee---ccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCC--ccccch
Confidence 2336667776 333333222211 1 1 1122343322211110000000 011222
Q ss_pred CCCCCccceeccccccccccCCCCC-CceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCce-e
Q 004456 331 PGSKDVAPRVLFDRVFENVYSDPGS-PMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSK-E 408 (752)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~~~~~~~~-p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~-~ 408 (752)
...- +.+-..... +. -.+..+||+++|++...-+ .....|.++|.++-+. +
T Consensus 256 ~~~w----kvv~~I~~~------G~glFi~thP~s~~vwvd~~~~-----------------~~~~~v~viD~~tl~~~~ 308 (369)
T PF02239_consen 256 DYAW----KVVKTIPTQ------GGGLFIKTHPDSRYVWVDTFLN-----------------PDADTVQVIDKKTLKVVK 308 (369)
T ss_dssp TTBT----SEEEEEE-S------SSS--EE--TT-SEEEEE-TT------------------SSHT-EEEEECCGTEEEE
T ss_pred hhcC----eEEEEEECC------CCcceeecCCCCccEEeeccCC-----------------CCCceEEEEECcCcceeE
Confidence 2221 111111110 11 1245799999998873110 1134699999988754 3
Q ss_pred EEeeccchhhhhceeeeecCCcceecccCCCEEEEEEecCCCCcEEEEEECCCCCee
Q 004456 409 RIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSS 465 (752)
Q Consensus 409 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~~g~~~ 465 (752)
.+...... .+.+ +.|++||++++++....+. .|.++|..+.++.
T Consensus 309 ~i~~~~~~----~~~h-------~ef~~dG~~v~vS~~~~~~--~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 309 TITPGPGK----RVVH-------MEFNPDGKEVWVSVWDGNG--AIVVYDAKTLKEK 352 (369)
T ss_dssp -HHHHHT------EEE-------EEE-TTSSEEEEEEE--TT--EEEEEETTTTEEE
T ss_pred EEeccCCC----cEec-------cEECCCCCEEEEEEecCCC--EEEEEECCCcEEE
Confidence 33222111 1334 3899999999998876554 7999998876543
No 189
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=5e-07 Score=92.25 Aligned_cols=324 Identities=12% Similarity=0.099 Sum_probs=177.6
Q ss_pred eceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 004456 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (752)
Q Consensus 33 ~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~ 112 (752)
.+...+|++|+.+||. ....++|.+...+. ..+|.... .+..+.+||-|.+|.--.......
T Consensus 37 ~~v~~~S~~G~lfA~~-----------~~~~v~i~~~~~~~-~~lt~~~~-----~~~~L~fSP~g~yL~T~e~~~i~~- 98 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYS-----------DNQVVKVFEIATLK-VVLCVELK-----KTYDLLFSPKGNYLLTWEPWAIYG- 98 (566)
T ss_pred ceeEEEcCCCcEEEEE-----------cCCeEEEEEccCCc-EEEEeccc-----eeeeeeeccccccccccccccccc-
Confidence 5678899999999994 44789999887775 33333332 245778999999885321100000
Q ss_pred CCCccCCCCCceecc---------cccccccccchhhccCChhhhhhhhhhcccEEEEEccCC---CccccCCccceecc
Q 004456 113 PKKTMVPLGPKIQSN---------EQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG---TAKDFGTPAVYTAV 180 (752)
Q Consensus 113 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G---~~~~l~~~~~~~~~ 180 (752)
..-...+..+.. .-.+..+.. | .+.|+.|....++.-...++.+++++ ...+| ....+..+
T Consensus 99 ---~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W--~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl-~~~~i~~f 171 (566)
T KOG2315|consen 99 ---PKNASNPNVLVYNVETGVQRSQIQKKMQNG-W--VPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKL-SVSGITML 171 (566)
T ss_pred ---CCCCCCCceeeeeeccceehhheehhhhcC-c--ccccccchhhhhhhhcceEEEEecCCccceeeee-eccceeeE
Confidence 000000000000 001111111 2 56677777777777778888888844 11222 12567788
Q ss_pred ccCCCC--ceEEEEecccCccccccccCccccEEEEecC-CceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceE
Q 004456 181 EPSPDQ--KYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTL 257 (752)
Q Consensus 181 ~~SpDG--k~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l 257 (752)
.+||-+ -+|++-.-.. ...+..+.+|... .+....+..... |.+ .--.|.|.+-|+.+|
T Consensus 172 ~lSpgp~~~~vAvyvPe~--------kGaPa~vri~~~~~~~~~~~~a~ksF-------Fka---dkvqm~WN~~gt~LL 233 (566)
T KOG2315|consen 172 SLSPGPEPPFVAVYVPEK--------KGAPASVRIYKYPEEGQHQPVANKSF-------FKA---DKVQMKWNKLGTALL 233 (566)
T ss_pred EecCCCCCceEEEEccCC--------CCCCcEEEEeccccccccchhhhccc-------ccc---ceeEEEeccCCceEE
Confidence 888875 4454433221 2233455555443 111111111110 000 022589999999844
Q ss_pred EEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCcc
Q 004456 258 YWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVA 337 (752)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~ 337 (752)
+.++ .+-..-...--+...||.+++ +|.+...-....+.+.++.|+|+|+.++.....-+ ..+-++|+.+.
T Consensus 234 vLas-tdVDktn~SYYGEq~Lyll~t---~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMP--Akvtifnlr~~--- 304 (566)
T KOG2315|consen 234 VLAS-TDVDKTNASYYGEQTLYLLAT---QGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMP--AKVTIFNLRGK--- 304 (566)
T ss_pred EEEE-EeecCCCccccccceEEEEEe---cCceEEEecCCCCCceEEEECCCCCEEEEEEeccc--ceEEEEcCCCC---
Confidence 4443 322111111123447999988 54333333456788999999999998877664443 35777788762
Q ss_pred ceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeeccchh
Q 004456 338 PRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREK 417 (752)
Q Consensus 338 ~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~ 417 (752)
.+.+...+. ...+.|+|-|++|+++.-+ ..+..+-+||+.+.+ .|..-+
T Consensus 305 --~v~df~egp------RN~~~fnp~g~ii~lAGFG------------------NL~G~mEvwDv~n~K--~i~~~~--- 353 (566)
T KOG2315|consen 305 --PVFDFPEGP------RNTAFFNPHGNIILLAGFG------------------NLPGDMEVWDVPNRK--LIAKFK--- 353 (566)
T ss_pred --EeEeCCCCC------ccceEECCCCCEEEEeecC------------------CCCCceEEEeccchh--hccccc---
Confidence 333322221 1124599999999888633 234468899997632 222111
Q ss_pred hhhceeeeecCCcceecccCCCEEEEEEec
Q 004456 418 YFETAVALVFGQGEEDINLNQLKILTSKES 447 (752)
Q Consensus 418 ~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~ 447 (752)
..+...+.|+|||++++....+
T Consensus 354 --------a~~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 354 --------AANTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred --------cCCceEEEEcCCCcEEEEEecc
Confidence 1122346899999998776544
No 190
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.00 E-value=9.1e-09 Score=95.35 Aligned_cols=207 Identities=16% Similarity=0.119 Sum_probs=126.8
Q ss_pred EEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCC
Q 004456 494 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKL 573 (752)
Q Consensus 494 ~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~ 573 (752)
..+..++.|.. .+.+|+|+|+||. ..+..++.....+++++||.|+++......+
T Consensus 32 PkpLlI~tP~~-----~G~yPVilF~HG~---------------~l~ns~Ys~lL~HIASHGfIVVAPQl~~~~~----- 86 (307)
T PF07224_consen 32 PKPLLIVTPSE-----AGTYPVILFLHGF---------------NLYNSFYSQLLAHIASHGFIVVAPQLYTLFP----- 86 (307)
T ss_pred CCCeEEecCCc-----CCCccEEEEeech---------------hhhhHHHHHHHHHHhhcCeEEEechhhcccC-----
Confidence 46677777765 5679999999994 2233444466778999999999955433222
Q ss_pred CCchhHHHHHHHHHHHHHHHHHcC--------CCCCCcEEEEEeChHHHHHHHHHHhCC--CceeEEEEccCCCCCCCCc
Q 004456 574 PNDRFVEQLVSSAEAAVEEVVRRG--------VADPSRIAVGGHSYGAFMTAHLLAHAP--HLFCCGIARSGSYNKTLTP 643 (752)
Q Consensus 574 ~~~~~~~~~~~d~~~~~~~l~~~~--------~~d~~~i~l~G~S~GG~~a~~~~~~~p--~~~~~~v~~~~~~~~~~~~ 643 (752)
......+++..++++||.+.- ..+.++++++|||.||..|..+|..+- -.|.+.|.+.|+.......
T Consensus 87 ---p~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G~~k~~ 163 (307)
T PF07224_consen 87 ---PDGQDEIKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAGTSKGK 163 (307)
T ss_pred ---CCchHHHHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCCCCCCC
Confidence 123566778888889987641 246779999999999999999998652 2478888888764321100
Q ss_pred cCccccccchhhhHHHHHhcChhhhcCCCCCCEEEEEeCCC-----CCCCCCHH--HHHHHHHHHHhCCCcEEEEEeCCC
Q 004456 644 FGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVD-----DKVGLFPM--QAERFFDALKGHGALSRLVLLPFE 716 (752)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D-----~~v~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~ 716 (752)
... .. ...+.|-. =++..|+++|-..-- ...||.+. +=++++..++ .++...+..+-
T Consensus 164 ~t~--P~---------iLty~p~S--F~l~iPv~VIGtGLg~~~~~~~~~CaP~gvnH~eFf~eCk---~p~~hfV~~dY 227 (307)
T PF07224_consen 164 QTP--PP---------ILTYVPQS--FDLDIPVLVIGTGLGPKRNPLFPPCAPDGVNHEEFFNECK---PPCAHFVAKDY 227 (307)
T ss_pred CCC--CC---------eeecCCcc--cccCCceEEEecCcCccccCCCCCCCCCCcCHHHHHHhhc---ccceeeeeccc
Confidence 000 00 00000100 124589998866543 22234232 3456766654 45666677788
Q ss_pred CccCCcc----------------------ccH-HHHHHHHHHHHHHHhcCC
Q 004456 717 HHVYAAR----------------------ENV-MHVIWETDRWLQKYCLSN 744 (752)
Q Consensus 717 ~H~~~~~----------------------~~~-~~~~~~~~~fl~~~l~~~ 744 (752)
||+-... +.+ +-+--.+++||+.+|.+.
T Consensus 228 GHmDmLDD~~~g~~G~~~~clCkng~~pr~pMRr~vgGivVAFL~a~l~~~ 278 (307)
T PF07224_consen 228 GHMDMLDDDTPGIIGKLSYCLCKNGKSPRDPMRRFVGGIVVAFLKAYLEGD 278 (307)
T ss_pred ccccccccCccccccceeeEeecCCCCcchHHHHhhhhhHHHHHHHHHcCC
Confidence 8953211 111 223346899999998654
No 191
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.00 E-value=3.9e-07 Score=106.31 Aligned_cols=229 Identities=10% Similarity=0.077 Sum_probs=131.9
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcc--e----eccCCCCccccccccceEEecC-CcEEEEE
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--K----PLFESPDICLNAVFGSFVWVNN-STLLIFT 104 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~--~----~lt~~~~~~~~~~~~~~~wspd-g~~l~~~ 104 (752)
.+....|+|||++||... ....|.|++...... + ++..... ...+..+.|+|. ++.|+..
T Consensus 485 ~V~~i~fs~dg~~latgg----------~D~~I~iwd~~~~~~~~~~~~~~~~~~~~---~~~v~~l~~~~~~~~~las~ 551 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAG----------VNKKIKIFECESIIKDGRDIHYPVVELAS---RSKLSGICWNSYIKSQVASS 551 (793)
T ss_pred cEEEEEECCCCCEEEEEe----------CCCEEEEEECCcccccccccccceEEecc---cCceeeEEeccCCCCEEEEE
Confidence 578899999999998863 345677777643211 0 1100011 113557799875 5655544
Q ss_pred ecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CC-CccccCCc-cceeccc
Q 004456 105 IPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVE 181 (752)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G-~~~~l~~~-~~~~~~~ 181 (752)
+. .+.|.+||+ ++ ....+..+ ..+..++
T Consensus 552 ~~-------------------------------------------------Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~ 582 (793)
T PLN00181 552 NF-------------------------------------------------EGVVQVWDVARSQLVTEMKEHEKRVWSID 582 (793)
T ss_pred eC-------------------------------------------------CCeEEEEECCCCeEEEEecCCCCCEEEEE
Confidence 21 157888998 55 34445555 7889999
Q ss_pred cCC-CCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeee-eCCCceEEE
Q 004456 182 PSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWR-ADKPSTLYW 259 (752)
Q Consensus 182 ~Sp-DGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ws-pDG~~~l~~ 259 (752)
|+| ||..|+..+.+ +.+.+||+.++.......... .+..+.|+ ++|+. |+.
T Consensus 583 ~~p~~~~~L~Sgs~D-------------g~v~iWd~~~~~~~~~~~~~~-------------~v~~v~~~~~~g~~-lat 635 (793)
T PLN00181 583 YSSADPTLLASGSDD-------------GSVKLWSINQGVSIGTIKTKA-------------NICCVQFPSESGRS-LAF 635 (793)
T ss_pred EcCCCCCEEEEEcCC-------------CEEEEEECCCCcEEEEEecCC-------------CeEEEEEeCCCCCE-EEE
Confidence 997 78877776555 379999998654322111111 14467784 56775 555
Q ss_pred EEeccCCCCccccCccceEEeccCCCCCCCC-CeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCc--
Q 004456 260 VEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDV-- 336 (752)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~-- 336 (752)
.+ ..+.|++||+. .... ...+......+..+.|+ ++..|+.++. ...|.++++..+..
T Consensus 636 gs------------~dg~I~iwD~~--~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 636 GS------------ADHKVYYYDLR--NPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSISGI 696 (793)
T ss_pred Ee------------CCCeEEEEECC--CCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCcccc
Confidence 43 34478999883 2221 23344455667888897 6777776652 23466666653210
Q ss_pred cceeccccccccccCCCCCCceeeCCCCCeEEEeee
Q 004456 337 APRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (752)
Q Consensus 337 ~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~ 372 (752)
....+....... .....++|+++|++|+..+.
T Consensus 697 ~~~~l~~~~gh~----~~i~~v~~s~~~~~lasgs~ 728 (793)
T PLN00181 697 NETPLHSFMGHT----NVKNFVGLSVSDGYIATGSE 728 (793)
T ss_pred CCcceEEEcCCC----CCeeEEEEcCCCCEEEEEeC
Confidence 011111111110 01223679999998888873
No 192
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=98.98 E-value=3.4e-08 Score=89.27 Aligned_cols=114 Identities=23% Similarity=0.249 Sum_probs=89.0
Q ss_pred CCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc-cCccccccchhhhHHHHHhcChhhhcCCCCCCE
Q 004456 598 VADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP-FGFQTEFRTLWEATNVYIEMSPITHANKIKKPI 676 (752)
Q Consensus 598 ~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 676 (752)
.++.+||++-|+||||.++++.+...|..+.+.+...++....... .++... .+ .+|+
T Consensus 89 Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~~~~~~~~~~-------------------~~--~~~i 147 (206)
T KOG2112|consen 89 GIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRASIGLPGWLPG-------------------VN--YTPI 147 (206)
T ss_pred CCCccceeEcccCchHHHHHHHHhccccccceeeccccccccchhhccCCccc-------------------cC--cchh
Confidence 4788999999999999999999998877777777777654321111 111000 01 5899
Q ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHHH
Q 004456 677 LIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 739 (752)
Q Consensus 677 li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 739 (752)
+..||+.|++|| ..-.++..+.|...+.+++++.|++.+|.... +.+..+..|+.+
T Consensus 148 ~~~Hg~~d~~vp--~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~~-----~e~~~~~~~~~~ 203 (206)
T KOG2112|consen 148 LLCHGTADPLVP--FRFGEKSAQFLKSLGVRVTFKPYPGLGHSTSP-----QELDDLKSWIKT 203 (206)
T ss_pred heecccCCceee--hHHHHHHHHHHHHcCCceeeeecCCccccccH-----HHHHHHHHHHHH
Confidence 999999999999 88888899999999999999999999997653 456778888877
No 193
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.96 E-value=1.9e-07 Score=86.01 Aligned_cols=252 Identities=10% Similarity=0.071 Sum_probs=148.2
Q ss_pred CCcceeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCC
Q 004456 2 PFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (752)
Q Consensus 2 ~~~~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~ 81 (752)
+|-+.+.+++++.+ ...+.+.....+..+....|+|-..-+.++. .++..|.+++...++....+...
T Consensus 39 s~dktv~v~n~e~~---r~~~~~~~~gh~~svdql~w~~~~~d~~ata---------s~dk~ir~wd~r~~k~~~~i~~~ 106 (313)
T KOG1407|consen 39 SFDKTVSVWNLERD---RFRKELVYRGHTDSVDQLCWDPKHPDLFATA---------SGDKTIRIWDIRSGKCTARIETK 106 (313)
T ss_pred ccCCceEEEEecch---hhhhhhcccCCCcchhhheeCCCCCcceEEe---------cCCceEEEEEeccCcEEEEeecc
Confidence 45566677777661 1222222222233577788988887776654 45578899999888877766554
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEE
Q 004456 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (752)
Q Consensus 82 ~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~ 161 (752)
.. -....|||||+++++...+ ..|-.
T Consensus 107 ~e-----ni~i~wsp~g~~~~~~~kd-------------------------------------------------D~it~ 132 (313)
T KOG1407|consen 107 GE-----NINITWSPDGEYIAVGNKD-------------------------------------------------DRITF 132 (313)
T ss_pred Cc-----ceEEEEcCCCCEEEEecCc-------------------------------------------------ccEEE
Confidence 42 2355999999999987321 23444
Q ss_pred Ecc-CCCccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecC-CceeEEecCCCCCCCCCcccC
Q 004456 162 GSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYN 238 (752)
Q Consensus 162 ~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~~ 238 (752)
+|. +-+...-.+. .....+.|+=++. ++|...... .+.+..-- -+.+..+...+
T Consensus 133 id~r~~~~~~~~~~~~e~ne~~w~~~nd-~Fflt~GlG------------~v~ILsypsLkpv~si~AH~---------- 189 (313)
T KOG1407|consen 133 IDARTYKIVNEEQFKFEVNEISWNNSND-LFFLTNGLG------------CVEILSYPSLKPVQSIKAHP---------- 189 (313)
T ss_pred EEecccceeehhcccceeeeeeecCCCC-EEEEecCCc------------eEEEEeccccccccccccCC----------
Confidence 444 2211111111 4566788885554 444433321 33332211 11112222222
Q ss_pred CccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeee
Q 004456 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETW 318 (752)
Q Consensus 239 ~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~ 318 (752)
.+=.-+.|+|+|++ ++.-+ ....+-+||++.+ -..+.++..+..++.++||-||+.|+.+++
T Consensus 190 ---snCicI~f~p~Gry-fA~Gs------------ADAlvSLWD~~EL--iC~R~isRldwpVRTlSFS~dg~~lASaSE 251 (313)
T KOG1407|consen 190 ---SNCICIEFDPDGRY-FATGS------------ADALVSLWDVDEL--ICERCISRLDWPVRTLSFSHDGRMLASASE 251 (313)
T ss_pred ---cceEEEEECCCCce-Eeecc------------ccceeeccChhHh--hhheeeccccCceEEEEeccCcceeeccCc
Confidence 12335899999998 55543 2236778888422 356778999999999999999999998873
Q ss_pred cccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeee
Q 004456 319 YKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (752)
Q Consensus 319 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~ 373 (752)
+. -|=+.++.+| .++++..-.. ....++|-|.-..|||+..+
T Consensus 252 Dh----~IDIA~vetG----d~~~eI~~~~-----~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 252 DH----FIDIAEVETG----DRVWEIPCEG-----PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred cc----eEEeEecccC----CeEEEeeccC-----CceeEEecCCCceeeEEecC
Confidence 32 2445555554 2333322211 22237799999999998754
No 194
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=98.96 E-value=2.3e-08 Score=95.96 Aligned_cols=223 Identities=20% Similarity=0.165 Sum_probs=128.7
Q ss_pred CceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCC----
Q 004456 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR---- 555 (752)
Q Consensus 480 ~~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G---- 555 (752)
...+.+.+.+.-..+....+|+|+++.+.. ++|+++++||-.+.. ..........|...|
T Consensus 67 ~~~~~~~~~~~l~~~~~~vv~lppgy~~~~--k~pvl~~~DG~~~~~--------------~g~i~~~~dsli~~g~i~p 130 (299)
T COG2382 67 GPVEEILYSSELLSERRRVVYLPPGYNPLE--KYPVLYLQDGQDWFR--------------SGRIPRILDSLIAAGEIPP 130 (299)
T ss_pred CchhhhhhhhhhccceeEEEEeCCCCCccc--cccEEEEeccHHHHh--------------cCChHHHHHHHHHcCCCCC
Confidence 345555555544457888899999987654 599999999932110 111122334555544
Q ss_pred cEEEecCCCCCCCCCCCCCC-chhHHHHHHHHHHHHHHHHHcCC--CCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEE
Q 004456 556 FAVLAGPSIPIIGEGDKLPN-DRFVEQLVSSAEAAVEEVVRRGV--ADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA 632 (752)
Q Consensus 556 ~~v~~~~~~~~~g~g~~~~~-~~~~~~~~~d~~~~~~~l~~~~~--~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~ 632 (752)
-.++.+++.+..-..+.... ..+...+ ..+.+-++.+... -++++-+|+|.|+||.++++++.++|+.|-.+++
T Consensus 131 ai~vgid~~d~~~R~~~~~~n~~~~~~L---~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s 207 (299)
T COG2382 131 AILVGIDYIDVKKRREELHCNEAYWRFL---AQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLS 207 (299)
T ss_pred ceEEecCCCCHHHHHHHhcccHHHHHHH---HHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeec
Confidence 34444444332111111111 1122222 2355566766532 3567899999999999999999999999999999
Q ss_pred ccCCCCCCCCccCccccccchhhhHHHHHhcChhhhcCCCCCCEEEEEeC-CCCCCCCCHHHHHHHHHHHHhCCCcEEEE
Q 004456 633 RSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGE-VDDKVGLFPMQAERFFDALKGHGALSRLV 711 (752)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~-~D~~v~~~~~~~~~~~~~l~~~~~~~~~~ 711 (752)
.+|.+........ .. .......+-......... +.+..|. .+.+ ....+++.+.|...+.++.+.
T Consensus 208 ~Sps~~~~~~~~~---~~------~~~~~~l~~~~a~~~~~~-~~l~~g~~~~~~----~~pNr~L~~~L~~~g~~~~yr 273 (299)
T COG2382 208 QSGSFWWTPLDTQ---PQ------GEVAESLKILHAIGTDER-IVLTTGGEEGDF----LRPNRALAAQLEKKGIPYYYR 273 (299)
T ss_pred cCCccccCccccc---cc------cchhhhhhhhhccCccce-EEeecCCccccc----cchhHHHHHHHHhcCCcceee
Confidence 9997654321111 00 000110111111122223 3333333 3333 345678999999999999999
Q ss_pred EeCCCCccCCccccHHHHHHHHHHHHHHHhc
Q 004456 712 LLPFEHHVYAARENVMHVIWETDRWLQKYCL 742 (752)
Q Consensus 712 ~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 742 (752)
.|+| ||... -+...+.++|...++
T Consensus 274 e~~G-gHdw~------~Wr~~l~~~L~~l~~ 297 (299)
T COG2382 274 EYPG-GHDWA------WWRPALAEGLQLLLP 297 (299)
T ss_pred ecCC-CCchh------HhHHHHHHHHHHhhc
Confidence 9998 89743 344556666666553
No 195
>PTZ00420 coronin; Provisional
Probab=98.95 E-value=3.5e-07 Score=99.09 Aligned_cols=137 Identities=12% Similarity=0.093 Sum_probs=82.0
Q ss_pred cEEEEEcc-CC-C-cc-------ccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEec
Q 004456 157 AQLVLGSL-DG-T-AK-------DFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC 225 (752)
Q Consensus 157 ~~i~~~~~-~G-~-~~-------~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 225 (752)
+.|.+|++ ++ . .. .+..+ ..+..+.|+|+++.++.+.... +.|.+||+.+++.....
T Consensus 97 gtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D------------gtIrIWDl~tg~~~~~i 164 (568)
T PTZ00420 97 LTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD------------SFVNIWDIENEKRAFQI 164 (568)
T ss_pred CeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCC------------CeEEEEECCCCcEEEEE
Confidence 46777777 33 2 11 22333 6788999999999887654432 37999999877543221
Q ss_pred CCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccce----
Q 004456 226 DLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRF---- 301 (752)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~---- 301 (752)
... ..+..++|+|||+. |+..+ ....|.+||+. .+.....+....+..
T Consensus 165 ~~~-------------~~V~SlswspdG~l-Lat~s------------~D~~IrIwD~R--sg~~i~tl~gH~g~~~s~~ 216 (568)
T PTZ00420 165 NMP-------------KKLSSLKWNIKGNL-LSGTC------------VGKHMHIIDPR--KQEIASSFHIHDGGKNTKN 216 (568)
T ss_pred ecC-------------CcEEEEEECCCCCE-EEEEe------------cCCEEEEEECC--CCcEEEEEecccCCceeEE
Confidence 111 12668999999996 44432 23478899983 222223333222222
Q ss_pred -eeeeeecCCceEEEeeecccCceeEEEEcCCC
Q 004456 302 -RSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (752)
Q Consensus 302 -~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 333 (752)
....|++|++.|+.+.........|.++|+..
T Consensus 217 v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 217 IWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred EEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 11235689998888764443344688888775
No 196
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.7e-07 Score=97.44 Aligned_cols=270 Identities=10% Similarity=0.104 Sum_probs=170.4
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (752)
..+...|| ....+|.. -...+|+++..+++.++|..... ..+..+.|+++|++|+....
T Consensus 179 Y~nlldWs-s~n~laVa-----------lg~~vylW~~~s~~v~~l~~~~~----~~vtSv~ws~~G~~LavG~~----- 237 (484)
T KOG0305|consen 179 YLNLLDWS-SANVLAVA-----------LGQSVYLWSASSGSVTELCSFGE----ELVTSVKWSPDGSHLAVGTS----- 237 (484)
T ss_pred hhhHhhcc-cCCeEEEE-----------ecceEEEEecCCCceEEeEecCC----CceEEEEECCCCCEEEEeec-----
Confidence 55678899 33366663 34799999999999999876532 15788999999999998632
Q ss_pred CCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CC-CccccCC-c-cceeccccCCCCc
Q 004456 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGT-P-AVYTAVEPSPDQK 187 (752)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G-~~~~l~~-~-~~~~~~~~SpDGk 187 (752)
.+.+.++|. +- ..+.+.. + ..+..++|+ +.
T Consensus 238 --------------------------------------------~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~ 271 (484)
T KOG0305|consen 238 --------------------------------------------DGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SS 271 (484)
T ss_pred --------------------------------------------CCeEEEEehhhccccccccCCcCceeEEEecc--Cc
Confidence 167888887 33 5555555 4 888899998 33
Q ss_pred eEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCC
Q 004456 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (752)
Q Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~ 267 (752)
.+...+.. ..|..+|+...+...-+ ...+.-.+-.+.|++||+. ++--.
T Consensus 272 ~lssGsr~-------------~~I~~~dvR~~~~~~~~-----------~~~H~qeVCgLkws~d~~~-lASGg------ 320 (484)
T KOG0305|consen 272 VLSSGSRD-------------GKILNHDVRISQHVVST-----------LQGHRQEVCGLKWSPDGNQ-LASGG------ 320 (484)
T ss_pred eEEEecCC-------------CcEEEEEEecchhhhhh-----------hhcccceeeeeEECCCCCe-eccCC------
Confidence 33333222 36777776544321111 1111222557899999997 32221
Q ss_pred CccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceec--cccc
Q 004456 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL--FDRV 345 (752)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~ 345 (752)
..+.++++|.. .......+....+.+..++|+|=...|+.+. .......|..++..++ ..... +...
T Consensus 321 ------nDN~~~Iwd~~--~~~p~~~~~~H~aAVKA~awcP~q~~lLAsG-GGs~D~~i~fwn~~~g--~~i~~vdtgsQ 389 (484)
T KOG0305|consen 321 ------NDNVVFIWDGL--SPEPKFTFTEHTAAVKALAWCPWQSGLLATG-GGSADRCIKFWNTNTG--ARIDSVDTGSQ 389 (484)
T ss_pred ------CccceEeccCC--CccccEEEeccceeeeEeeeCCCccCceEEc-CCCcccEEEEEEcCCC--cEecccccCCc
Confidence 33478999873 2334556788899999999999877777665 3445567888888874 22222 2222
Q ss_pred cccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeeccchhhhhceeee
Q 004456 346 FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVAL 425 (752)
Q Consensus 346 ~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~ 425 (752)
+.. +.||+..+.|+.+. |+. +..|.+|+..+-+..+......
T Consensus 390 Vcs---------L~Wsk~~kEi~sth---------------G~s----~n~i~lw~~ps~~~~~~l~gH~---------- 431 (484)
T KOG0305|consen 390 VCS---------LIWSKKYKELLSTH---------------GYS----ENQITLWKYPSMKLVAELLGHT---------- 431 (484)
T ss_pred eee---------EEEcCCCCEEEEec---------------CCC----CCcEEEEeccccceeeeecCCc----------
Confidence 222 77999999887775 221 2357777776643333222221
Q ss_pred ecCCcceecccCCCEEEEEEecCC
Q 004456 426 VFGQGEEDINLNQLKILTSKESKT 449 (752)
Q Consensus 426 ~~~~~~~~~s~d~~~l~~~~~~~~ 449 (752)
.....+++||||..++....+.+
T Consensus 432 -~RVl~la~SPdg~~i~t~a~DET 454 (484)
T KOG0305|consen 432 -SRVLYLALSPDGETIVTGAADET 454 (484)
T ss_pred -ceeEEEEECCCCCEEEEecccCc
Confidence 11223589999998877654443
No 197
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=98.94 E-value=6.2e-07 Score=84.36 Aligned_cols=245 Identities=11% Similarity=0.111 Sum_probs=152.1
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcc--eeccCCCCccccccccceEEecCCcEEEEEecCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~--~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~ 109 (752)
-+....|+|||..+|-. ..+.+|+++++.+... -.+.-+.. .+..+.|++|++.|+..+.+
T Consensus 49 eI~~~~F~P~gs~~aSg----------G~Dr~I~LWnv~gdceN~~~lkgHsg-----AVM~l~~~~d~s~i~S~gtD-- 111 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASG----------GSDRAIVLWNVYGDCENFWVLKGHSG-----AVMELHGMRDGSHILSCGTD-- 111 (338)
T ss_pred eEEEEEECCCCCeEeec----------CCcceEEEEeccccccceeeeccccc-----eeEeeeeccCCCEEEEecCC--
Confidence 47889999999999884 5567899999776543 33332222 46788999999999876431
Q ss_pred CCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CC-CccccCCc-cceeccccCCCC
Q 004456 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQ 186 (752)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G-~~~~l~~~-~~~~~~~~SpDG 186 (752)
..++.||. +| ..++...+ .-...+..+.=|
T Consensus 112 -----------------------------------------------k~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg 144 (338)
T KOG0265|consen 112 -----------------------------------------------KTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRG 144 (338)
T ss_pred -----------------------------------------------ceEEEEecccceeeehhccccceeeecCccccC
Confidence 57899999 88 44555544 445566666667
Q ss_pred ceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCC
Q 004456 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (752)
Q Consensus 187 k~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~ 266 (752)
-.++-+..+. ..+.+||...++..++...... ...+.|..++.. + +..-
T Consensus 145 ~~lv~SgsdD------------~t~kl~D~R~k~~~~t~~~kyq-------------ltAv~f~d~s~q-v-~sgg---- 193 (338)
T KOG0265|consen 145 PQLVCSGSDD------------GTLKLWDIRKKEAIKTFENKYQ-------------LTAVGFKDTSDQ-V-ISGG---- 193 (338)
T ss_pred CeEEEecCCC------------ceEEEEeecccchhhcccccee-------------EEEEEecccccc-e-eecc----
Confidence 7777665553 4899999998766554433322 456788877775 2 2211
Q ss_pred CCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccc-eeccccc
Q 004456 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAP-RVLFDRV 345 (752)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~l~~~~ 345 (752)
-.+.|-+||.. .......+......+..++-||+|..+.-.+.+. .-.+|-+..--+ ..+ ..++.+.
T Consensus 194 -------Idn~ikvWd~r--~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~--tvrvwd~rp~~p-~~R~v~if~g~ 261 (338)
T KOG0265|consen 194 -------IDNDIKVWDLR--KNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDN--TVRVWDVRPFAP-SQRCVKIFQGH 261 (338)
T ss_pred -------ccCceeeeccc--cCcceEEeecccCceeeEEeccCCCccccccccc--eEEEEEecccCC-CCceEEEeecc
Confidence 22357777773 2223344455556678899999999988765322 223343333332 222 2233332
Q ss_pred cccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCc
Q 004456 346 FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGS 406 (752)
Q Consensus 346 ~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~ 406 (752)
...... ..-.-+|||+++.+.+.+.+. .+|+||..+..
T Consensus 262 ~hnfek--nlL~cswsp~~~~i~ags~dr---------------------~vyvwd~~~r~ 299 (338)
T KOG0265|consen 262 IHNFEK--NLLKCSWSPNGTKITAGSADR---------------------FVYVWDTTSRR 299 (338)
T ss_pred hhhhhh--hcceeeccCCCCccccccccc---------------------eEEEeeccccc
Confidence 221100 011135999999998887442 68999976533
No 198
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.93 E-value=4.8e-07 Score=87.33 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=83.2
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (752)
.+....||.||.+||-. +-.+.|.|....+|..+.....+.. .+..+.|.|-+..|++.+.
T Consensus 108 SVt~~~FshdgtlLATG----------dmsG~v~v~~~stg~~~~~~~~e~~----dieWl~WHp~a~illAG~~----- 168 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLATG----------DMSGKVLVFKVSTGGEQWKLDQEVE----DIEWLKWHPRAHILLAGST----- 168 (399)
T ss_pred ceEEEEEccCceEEEec----------CCCccEEEEEcccCceEEEeecccC----ceEEEEecccccEEEeecC-----
Confidence 68889999999999984 4456788888777765554332211 3568899999888877532
Q ss_pred CCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCC-ccccCCc-cceeccccCCCCce
Q 004456 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQKY 188 (752)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~-~~~l~~~-~~~~~~~~SpDGk~ 188 (752)
.+.+|.|.+ ++. .+.+..+ .....-.|.||||+
T Consensus 169 --------------------------------------------DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr 204 (399)
T KOG0296|consen 169 --------------------------------------------DGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKR 204 (399)
T ss_pred --------------------------------------------CCcEEEEECCCcceeeEecCCCCCcccccccCCCce
Confidence 167888888 543 3333333 67778899999999
Q ss_pred EEEEecccCccccccccCccccEEEEecCCceeE
Q 004456 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR 222 (752)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 222 (752)
|+....+ +.|.+|++.+++..
T Consensus 205 ~~tgy~d-------------gti~~Wn~ktg~p~ 225 (399)
T KOG0296|consen 205 ILTGYDD-------------GTIIVWNPKTGQPL 225 (399)
T ss_pred EEEEecC-------------ceEEEEecCCCcee
Confidence 9887655 38999999887543
No 199
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=7.9e-07 Score=90.40 Aligned_cols=304 Identities=13% Similarity=0.099 Sum_probs=166.2
Q ss_pred eeceeEecCCCCeEEEeeccc-cccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVD-EEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~-~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~ 110 (752)
.+....|||.-+||+-.+... ........+.+|.|+|+.+|..++-.......+. .+.-+.||.|+++++.....
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~-~WP~frWS~DdKy~Arm~~~--- 326 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYL-KWPIFRWSHDDKYFARMTGN--- 326 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCcc-ccceEEeccCCceeEEeccc---
Confidence 578889999999987765511 0011124568999999999987765443222111 25577999999999865210
Q ss_pred CCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCCCccccCCccceeccccCCCCceEE
Q 004456 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVL 190 (752)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G~~~~l~~~~~~~~~~~SpDGk~l~ 190 (752)
+ +... .....+++ +++...+ .++..+.|||-+..||
T Consensus 327 ----------s--isIy---------------------------Etpsf~ll--d~Kslki---~gIr~FswsP~~~llA 362 (698)
T KOG2314|consen 327 ----------S--ISIY---------------------------ETPSFMLL--DKKSLKI---SGIRDFSWSPTSNLLA 362 (698)
T ss_pred ----------e--EEEE---------------------------ecCceeee--cccccCC---ccccCcccCCCcceEE
Confidence 0 0000 00112222 2322222 5788999999999999
Q ss_pred EEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEE-EEeccCCCCc
Q 004456 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYW-VEAQDRGDAN 269 (752)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~-~~~~~~~~~~ 269 (752)
|-.-... ..+..+-+..+-+++..+-.++-. ...-.+.|-.+|++ |.+ +........
T Consensus 363 Ywtpe~~--------~~parvtL~evPs~~~iRt~nlfn------------VsDckLhWQk~gdy-LcvkvdR~tK~~~- 420 (698)
T KOG2314|consen 363 YWTPETN--------NIPARVTLMEVPSKREIRTKNLFN------------VSDCKLHWQKSGDY-LCVKVDRHTKSKV- 420 (698)
T ss_pred EEccccc--------CCcceEEEEecCccceeeecccee------------eeccEEEeccCCcE-EEEEEEeeccccc-
Confidence 9864432 123455566655554332222110 00124799999998 544 322211100
Q ss_pred cccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecc-cCceeEEEEcCCCCCccceecccccccc
Q 004456 270 VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK-TSQTRTWLVCPGSKDVAPRVLFDRVFEN 348 (752)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~-~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 348 (752)
.-.-.+-.|+.++- ...+.........+..++|-|.|..++..+... ..+-..|-+.... ..+..+-.....
T Consensus 421 ~g~f~n~eIfrire----KdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~--~~~~lVk~~dk~- 493 (698)
T KOG2314|consen 421 KGQFSNLEIFRIRE----KDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI--KKPSLVKELDKK- 493 (698)
T ss_pred cceEeeEEEEEeec----cCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC--Cchhhhhhhccc-
Confidence 00001224444432 233444556667788899999999998876333 2333455555433 333333222221
Q ss_pred ccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeeccchhhhhceeeeecC
Q 004456 349 VYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFG 428 (752)
Q Consensus 349 ~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~ 428 (752)
....+.|||.|+.++.+...+ .+..|+-+|..-...+.+...+ ...
T Consensus 494 -----~~N~vfwsPkG~fvvva~l~s------------------~~g~l~F~D~~~a~~k~~~~~e-----------h~~ 539 (698)
T KOG2314|consen 494 -----FANTVFWSPKGRFVVVAALVS------------------RRGDLEFYDTDYADLKDTASPE-----------HFA 539 (698)
T ss_pred -----ccceEEEcCCCcEEEEEEecc------------------cccceEEEecchhhhhhccCcc-----------ccc
Confidence 112266999999998887431 1224777776532333222111 123
Q ss_pred CcceecccCCCEEEEEEe
Q 004456 429 QGEEDINLNQLKILTSKE 446 (752)
Q Consensus 429 ~~~~~~s~d~~~l~~~~~ 446 (752)
...+.|.|-|++++...+
T Consensus 540 at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 540 ATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred cccceECCCCCEEEEeee
Confidence 445689999998866543
No 200
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=98.92 E-value=4.5e-08 Score=91.49 Aligned_cols=124 Identities=21% Similarity=0.258 Sum_probs=83.4
Q ss_pred ceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCch-hHHHHH-hCCcEE
Q 004456 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPT-SSLIFL-ARRFAV 558 (752)
Q Consensus 481 ~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~-~~G~~v 558 (752)
..+.+.+...+. .+..++-+|.. ...|++++.||+|. +.+.+. ++..+. ..-..|
T Consensus 49 ekedv~i~~~~~-t~n~Y~t~~~~------t~gpil~l~HG~G~----------------S~LSfA~~a~el~s~~~~r~ 105 (343)
T KOG2564|consen 49 EKEDVSIDGSDL-TFNVYLTLPSA------TEGPILLLLHGGGS----------------SALSFAIFASELKSKIRCRC 105 (343)
T ss_pred cccccccCCCcc-eEEEEEecCCC------CCccEEEEeecCcc----------------cchhHHHHHHHHHhhcceeE
Confidence 456677765544 78888888863 13699999999753 333222 344444 355677
Q ss_pred EecCCCCCCCCCCCCCCc---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEc
Q 004456 559 LAGPSIPIIGEGDKLPND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIAR 633 (752)
Q Consensus 559 ~~~~~~~~~g~g~~~~~~---~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~--p~~~~~~v~~ 633 (752)
++ ++.+|+|++.... -..+.+..|+.+.++++-.. .+.+|.|+||||||.+|.+.+... |. +.+.+.+
T Consensus 106 ~a---~DlRgHGeTk~~~e~dlS~eT~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~k~lps-l~Gl~vi 178 (343)
T KOG2564|consen 106 LA---LDLRGHGETKVENEDDLSLETMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAASKTLPS-LAGLVVI 178 (343)
T ss_pred EE---eeccccCccccCChhhcCHHHHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhhhhchh-hhceEEE
Confidence 88 7788998874432 23456788998888777543 246899999999999998887654 44 4555544
Q ss_pred c
Q 004456 634 S 634 (752)
Q Consensus 634 ~ 634 (752)
.
T Consensus 179 D 179 (343)
T KOG2564|consen 179 D 179 (343)
T ss_pred E
Confidence 3
No 201
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=98.90 E-value=4.3e-08 Score=100.62 Aligned_cols=241 Identities=16% Similarity=0.141 Sum_probs=156.9
Q ss_pred CCCceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCC--CchhHHHHHhCC
Q 004456 478 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGM--TPTSSLIFLARR 555 (752)
Q Consensus 478 ~~~~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~G 555 (752)
..+++|...+.+.||- +-.....|... ++.|+|++.||-- +....|... ....+-.|+.+|
T Consensus 44 ~gy~~E~h~V~T~DgY-iL~lhRIp~~~-----~~rp~Vll~HGLl-----------~sS~~Wv~n~p~~sLaf~LadaG 106 (403)
T KOG2624|consen 44 YGYPVEEHEVTTEDGY-ILTLHRIPRGK-----KKRPVVLLQHGLL-----------ASSSSWVLNGPEQSLAFLLADAG 106 (403)
T ss_pred cCCceEEEEEEccCCe-EEEEeeecCCC-----CCCCcEEEeeccc-----------cccccceecCccccHHHHHHHcC
Confidence 4578999999999997 66666677652 4689999999941 111222221 223566788999
Q ss_pred cEEEecCCCCCCCCCCC-----------CCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC
Q 004456 556 FAVLAGPSIPIIGEGDK-----------LPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP 624 (752)
Q Consensus 556 ~~v~~~~~~~~~g~g~~-----------~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p 624 (752)
|.|...+.|+ ..+++. ++.-.+-+....|+-++++++.+.. ..+++..+|||+|+.....++...|
T Consensus 107 YDVWLgN~RG-n~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~T--~~~kl~yvGHSQGtt~~fv~lS~~p 183 (403)
T KOG2624|consen 107 YDVWLGNNRG-NTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEKT--GQEKLHYVGHSQGTTTFFVMLSERP 183 (403)
T ss_pred CceeeecCcC-cccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHhc--cccceEEEEEEccchhheehhcccc
Confidence 9999955443 233322 2222344556889999999998874 3579999999999999999998887
Q ss_pred C---ceeEEEEccCCCCCCCC---------c-----------cCc----cc------------c---c------------
Q 004456 625 H---LFCCGIARSGSYNKTLT---------P-----------FGF----QT------------E---F------------ 650 (752)
Q Consensus 625 ~---~~~~~v~~~~~~~~~~~---------~-----------~~~----~~------------~---~------------ 650 (752)
+ +++..++++|+.-.... . ++. +. . .
T Consensus 184 ~~~~kI~~~~aLAP~~~~k~~~~~~~~~~~~~~~~~~~~~~~fg~~~f~p~~~~~~~~~~~~C~~~~~~~~lC~~~~~~~ 263 (403)
T KOG2624|consen 184 EYNKKIKSFIALAPAAFPKHIKSLLNKFLDPFLGAFSLLPLLFGRKEFLPSNLFIKKFARKICSGSKIFADLCSNFLFLL 263 (403)
T ss_pred hhhhhhheeeeecchhhhcccccHHHHhhhhhhhhhhHHHHhcCCccccchhhHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 6 68888888887421100 0 000 00 0 0
Q ss_pred ----cchhh-----------------------------------------hHHHHHh-cChhhhcCCCCCCEEEEEeCCC
Q 004456 651 ----RTLWE-----------------------------------------ATNVYIE-MSPITHANKIKKPILIIHGEVD 684 (752)
Q Consensus 651 ----~~~~~-----------------------------------------~~~~~~~-~~~~~~~~~~~~P~li~~G~~D 684 (752)
...|+ +...|.. ..|...+.++++|+.++.|.+|
T Consensus 264 ~G~~~~~~n~~~~~~~~~h~pagtSvk~~~H~~Q~~~s~~f~~yD~G~~~N~~~Y~q~~pP~Y~l~~i~~P~~l~~g~~D 343 (403)
T KOG2624|consen 264 VGWNSNNWNTTLLPVYLAHLPAGTSVKNIVHWAQIVRSGKFRKYDYGSKRNLKHYGQSTPPEYDLTNIKVPTALYYGDND 343 (403)
T ss_pred cCcchHhhhhcccchhhccCCCCccHHHHHHHHHHhcCCCccccCCCccccHhhcCCCCCCCCCccccccCEEEEecCCc
Confidence 00000 0000000 1234456677899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccC--CccccHHHHHHHHHHHHHHHh
Q 004456 685 DKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVY--AARENVMHVIWETDRWLQKYC 741 (752)
Q Consensus 685 ~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~--~~~~~~~~~~~~~~~fl~~~l 741 (752)
.++. ++....+...+..... ...+-+++-+|.- .+....+..++.+++.+.+..
T Consensus 344 ~l~~--~~DV~~~~~~~~~~~~-~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~~~ 399 (403)
T KOG2624|consen 344 WLAD--PEDVLILLLVLPNSVI-KYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRLFE 399 (403)
T ss_pred ccCC--HHHHHHHHHhcccccc-cccccCCCccceeeeeccCcHHHHHHHHHHHHHhhh
Confidence 9998 8998888877766543 2333378888863 334557788888988888765
No 202
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.90 E-value=6.5e-08 Score=94.22 Aligned_cols=204 Identities=15% Similarity=0.080 Sum_probs=118.9
Q ss_pred CCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHH-hCCcEEEecCCCCCCCCCCCCCC-chhHHHHHHHHHH
Q 004456 511 GPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIPIIGEGDKLPN-DRFVEQLVSSAEA 588 (752)
Q Consensus 511 ~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~~~~~~~g~g~~~~~-~~~~~~~~~d~~~ 588 (752)
.+.|.++++||- .|....|. .+...|+ ..|-.|+++ +.+.+|.+..- ......+.+|+..
T Consensus 50 ~~~Pp~i~lHGl-----------~GS~~Nw~----sv~k~Ls~~l~~~v~~v---d~RnHG~Sp~~~~h~~~~ma~dv~~ 111 (315)
T KOG2382|consen 50 ERAPPAIILHGL-----------LGSKENWR----SVAKNLSRKLGRDVYAV---DVRNHGSSPKITVHNYEAMAEDVKL 111 (315)
T ss_pred CCCCceEEeccc-----------ccCCCCHH----HHHHHhcccccCceEEE---ecccCCCCccccccCHHHHHHHHHH
Confidence 347999999994 22222222 3344554 355677773 34455544221 1225566777777
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHH-HHHHHHHHhCCCceeEEEEcc--C-CCCCC---------------CC---ccC-
Q 004456 589 AVEEVVRRGVADPSRIAVGGHSYGA-FMTAHLLAHAPHLFCCGIARS--G-SYNKT---------------LT---PFG- 645 (752)
Q Consensus 589 ~~~~l~~~~~~d~~~i~l~G~S~GG-~~a~~~~~~~p~~~~~~v~~~--~-~~~~~---------------~~---~~~- 645 (752)
.++....... ..++.++|||||| -+++..+...|+.+..+|+.. | ..... .. ..+
T Consensus 112 Fi~~v~~~~~--~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~r 189 (315)
T KOG2382|consen 112 FIDGVGGSTR--LDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGR 189 (315)
T ss_pred HHHHcccccc--cCCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccH
Confidence 7777654422 3579999999999 666667777888766555543 3 11100 00 000
Q ss_pred -----------------------c---cccccchhh-----hHHHHH---hcChhhhc--CCCCCCEEEEEeCCCCCCCC
Q 004456 646 -----------------------F---QTEFRTLWE-----ATNVYI---EMSPITHA--NKIKKPILIIHGEVDDKVGL 689 (752)
Q Consensus 646 -----------------------~---~~~~~~~~~-----~~~~~~---~~~~~~~~--~~~~~P~li~~G~~D~~v~~ 689 (752)
+ .......|. ..+.+. ..+.-..+ .....|+|+++|.++..||
T Consensus 190 ke~~~~l~~~~~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~~~~~pvlfi~g~~S~fv~- 268 (315)
T KOG2382|consen 190 KEALKSLIEVGFDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLEDGPYTGPVLFIKGLQSKFVP- 268 (315)
T ss_pred HHHHHHHHHHhcchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhcccccccccccccceeEEecCCCCCcC-
Confidence 0 000000010 011111 11111112 4456899999999999998
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHHHHh
Q 004456 690 FPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 741 (752)
Q Consensus 690 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l 741 (752)
.++-.++. ..-..++++.++++||+.. .++++.++..+.+|+.++.
T Consensus 269 -~~~~~~~~----~~fp~~e~~~ld~aGHwVh-~E~P~~~~~~i~~Fl~~~~ 314 (315)
T KOG2382|consen 269 -DEHYPRME----KIFPNVEVHELDEAGHWVH-LEKPEEFIESISEFLEEPE 314 (315)
T ss_pred -hhHHHHHH----HhccchheeecccCCceee-cCCHHHHHHHHHHHhcccC
Confidence 55544443 3334579999999999987 7889999999999987753
No 203
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=98.90 E-value=3.3e-08 Score=93.65 Aligned_cols=189 Identities=18% Similarity=0.151 Sum_probs=113.9
Q ss_pred CCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCC-----------C--CC----
Q 004456 510 DGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE-----------G--DK---- 572 (752)
Q Consensus 510 ~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~-----------g--~~---- 572 (752)
..++|+|||-||.+ ++..++..++..||++||+|.++.-+|.... + ..
T Consensus 115 ~~k~PvvvFSHGLg---------------gsRt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ 179 (399)
T KOG3847|consen 115 NDKYPVVVFSHGLG---------------GSRTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIK 179 (399)
T ss_pred CCCccEEEEecccc---------------cchhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceE
Confidence 45699999999953 1233344678899999999999665543221 0 00
Q ss_pred ----CCC-------chhHHHHHHHHHHHHHHHHHc---------------------CCCCCCcEEEEEeChHHHHHHHHH
Q 004456 573 ----LPN-------DRFVEQLVSSAEAAVEEVVRR---------------------GVADPSRIAVGGHSYGAFMTAHLL 620 (752)
Q Consensus 573 ----~~~-------~~~~~~~~~d~~~~~~~l~~~---------------------~~~d~~~i~l~G~S~GG~~a~~~~ 620 (752)
... ......-++++..|++-|.+. +.+|-++++|+|||+||..++...
T Consensus 180 ir~v~~~ekef~irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~s 259 (399)
T KOG3847|consen 180 IRLVEANEKEFHIRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASS 259 (399)
T ss_pred eeeeccCceeEEeeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhh
Confidence 000 011122245555665555442 125677899999999999999888
Q ss_pred HhCCCceeEEEEccCCCCCCCCccCccccccchhhhHHHHHhcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHH
Q 004456 621 AHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDA 700 (752)
Q Consensus 621 ~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~ 700 (752)
+.+ ..|+++|+..++. ++... ...++++.|+|+|.-+ |... .++.. ...+
T Consensus 260 s~~-t~FrcaI~lD~WM--------~Pl~~----------------~~~~~arqP~~finv~-~fQ~---~en~~-vmKk 309 (399)
T KOG3847|consen 260 SSH-TDFRCAIALDAWM--------FPLDQ----------------LQYSQARQPTLFINVE-DFQW---NENLL-VMKK 309 (399)
T ss_pred ccc-cceeeeeeeeeee--------cccch----------------hhhhhccCCeEEEEcc-cccc---hhHHH-HHHh
Confidence 876 5799999887642 11110 1134567899999843 3432 23332 3333
Q ss_pred HHhCCCcEEEEEeCCCCccCCc------------------c----ccHHHHHHHHHHHHHHHhcC
Q 004456 701 LKGHGALSRLVLLPFEHHVYAA------------------R----ENVMHVIWETDRWLQKYCLS 743 (752)
Q Consensus 701 l~~~~~~~~~~~~~~~~H~~~~------------------~----~~~~~~~~~~~~fl~~~l~~ 743 (752)
+......-.+..+.|.-|.-.. . +..+...+..++||.+|+..
T Consensus 310 i~~~n~g~~~it~~GsVHqnfsDfpfv~p~~i~k~f~~kg~~dpy~~~~~~~r~slaFLq~h~d~ 374 (399)
T KOG3847|consen 310 IESQNEGNHVITLDGSVHQNFSDFPFVTPNWIGKVFKVKGETDPYEAMQIAIRASLAFLQKHLDL 374 (399)
T ss_pred hhCCCccceEEEEccceecccccCccccHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhhhh
Confidence 3333333467778888884211 1 11234567789999998854
No 204
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.88 E-value=2e-07 Score=88.52 Aligned_cols=285 Identities=14% Similarity=0.152 Sum_probs=147.3
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (752)
.+...+|||||++|.-++. -...|-|+.+-+.+...+..... .+..+++.|||++-+..+...=.+
T Consensus 93 gls~~~WSPdgrhiL~tse---------F~lriTVWSL~t~~~~~~~~pK~-----~~kg~~f~~dg~f~ai~sRrDCkd 158 (447)
T KOG4497|consen 93 GLSSISWSPDGRHILLTSE---------FDLRITVWSLNTQKGYLLPHPKT-----NVKGYAFHPDGQFCAILSRRDCKD 158 (447)
T ss_pred cceeeeECCCcceEeeeec---------ceeEEEEEEeccceeEEeccccc-----CceeEEECCCCceeeeeecccHHH
Confidence 5889999999999998764 33667777777776666633332 357889999999888765421111
Q ss_pred CCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc--CCCccccCCccceeccccCCCCceE
Q 004456 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL--DGTAKDFGTPAVYTAVEPSPDQKYV 189 (752)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~--~G~~~~l~~~~~~~~~~~SpDGk~l 189 (752)
....... ...+.. +........-..+.|++|+ ..|.++|. +-++-.....-++...+|||-|++|
T Consensus 159 yv~i~~c---~~W~ll--~~f~~dT~DltgieWsPdg--------~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qfl 225 (447)
T KOG4497|consen 159 YVQISSC---KAWILL--KEFKLDTIDLTGIEWSPDG--------NWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFL 225 (447)
T ss_pred HHHHHhh---HHHHHH--HhcCCCcccccCceECCCC--------cEEEEecchhhheeeeeeeccceeEEEeccccceE
Confidence 1000000 000000 0000000001123455554 34444442 1111111111467788999999999
Q ss_pred EEEecccCcc------------------ccccc------------------cCcc-c--cEEEEecCCceeEEecCCCC-
Q 004456 190 LITSMHRPYS------------------YKVPC------------------ARFS-Q--KVQVWTTDGKLVRELCDLPP- 229 (752)
Q Consensus 190 ~~~~~~~~~~------------------~~~~~------------------~~~~-~--~l~~~d~~~~~~~~l~~~~~- 229 (752)
++.+.+.--. +..+. -.|. . +...|.. ++...+....+.
T Consensus 226 avGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~-se~~YE~~~~pv~ 304 (447)
T KOG4497|consen 226 AVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEE-SETIYEQQMTPVK 304 (447)
T ss_pred EeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCcccc-chhhhhhhhccee
Confidence 9988773000 00000 0000 0 0000000 000000101110
Q ss_pred -CCC-CCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeee
Q 004456 230 -AED-IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWC 307 (752)
Q Consensus 230 -~~~-~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~s 307 (752)
... -|..+.+.--++.-++||+|..+ ++-. +....+.+++||+. ..+...+......++.+.|.
T Consensus 305 ~~~lkp~tD~pnPk~g~g~lafs~Ds~y-~aTr----------nd~~PnalW~Wdlq---~l~l~avLiQk~piraf~Wd 370 (447)
T KOG4497|consen 305 VHKLKPPTDFPNPKCGAGKLAFSCDSTY-AATR----------NDKYPNALWLWDLQ---NLKLHAVLIQKHPIRAFEWD 370 (447)
T ss_pred eecccCCCCCCCcccccceeeecCCceE-Eeee----------cCCCCceEEEEech---hhhhhhhhhhccceeEEEeC
Confidence 000 11222333345667999999985 3333 23466689999993 33333444455667889999
Q ss_pred cCCceEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEee
Q 004456 308 DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (752)
Q Consensus 308 pDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~ 371 (752)
|.-..|+... +..+||.+.+.+....-......+..+ +.|.-+|..|+...
T Consensus 371 P~~prL~vct----g~srLY~W~psg~~~V~vP~~GF~i~~---------l~W~~~g~~i~l~~ 421 (447)
T KOG4497|consen 371 PGRPRLVVCT----GKSRLYFWAPSGPRVVGVPKKGFNIQK---------LQWLQPGEFIVLCG 421 (447)
T ss_pred CCCceEEEEc----CCceEEEEcCCCceEEecCCCCceeee---------EEecCCCcEEEEEc
Confidence 9988888876 667899999987421111111122222 67999999887775
No 205
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=2.7e-07 Score=93.66 Aligned_cols=269 Identities=13% Similarity=0.160 Sum_probs=144.7
Q ss_pred ceeEEeecCCCCCCCCceeecCCCCCcee--ceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCC
Q 004456 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKI--NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (752)
Q Consensus 5 ~~i~~~~~~~~~~~g~~~~i~~~~~~~~~--~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~ 82 (752)
+-|.++++.. |..++--..+.++.. ...+||.|+|++|-.. ...|-|+.... -.|.....
T Consensus 282 ~~l~IWDI~t----G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~-----------~~sisIyEtps---f~lld~Ks 343 (698)
T KOG2314|consen 282 QQLIIWDIAT----GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMT-----------GNSISIYETPS---FMLLDKKS 343 (698)
T ss_pred ceEEEEEccc----cchhcceeccCCCccccceEEeccCCceeEEec-----------cceEEEEecCc---eeeecccc
Confidence 3466777766 655443222223322 3358999999999853 25666666433 11111111
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEE
Q 004456 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (752)
Q Consensus 83 ~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~ 162 (752)
..+. ++.+++|||-+..|+|.++....-. ..+-++
T Consensus 344 lki~-gIr~FswsP~~~llAYwtpe~~~~p--------------------------------------------arvtL~ 378 (698)
T KOG2314|consen 344 LKIS-GIRDFSWSPTSNLLAYWTPETNNIP--------------------------------------------ARVTLM 378 (698)
T ss_pred cCCc-cccCcccCCCcceEEEEcccccCCc--------------------------------------------ceEEEE
Confidence 1112 5789999999999999866433321 234444
Q ss_pred cc-CC-CccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCC
Q 004456 163 SL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (752)
Q Consensus 163 ~~-~G-~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (752)
.+ .+ +.+...-. -....+.|-..|++|.+.-.+..... ...-..++.++.+.-++. .+...+..
T Consensus 379 evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~---~~g~f~n~eIfrireKdI-pve~velk--------- 445 (698)
T KOG2314|consen 379 EVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSK---VKGQFSNLEIFRIREKDI-PVEVVELK--------- 445 (698)
T ss_pred ecCccceeeeccceeeeccEEEeccCCcEEEEEEEeecccc---ccceEeeEEEEEeeccCC-Cceeeecc---------
Confidence 44 33 22111111 12235679999999999766543211 011113455555443321 11111111
Q ss_pred ccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecc-cceeeeeeecCCceEEEeee
Q 004456 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFRSVSWCDDSLALVNETW 318 (752)
Q Consensus 240 ~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~-~~~~~~~~spDg~~l~~~~~ 318 (752)
..+..++|-|.|.+ ++.+..... ...-..|.+.. ....+..+...+ .....+.|||.|+.++.++-
T Consensus 446 --e~vi~FaWEP~gdk-F~vi~g~~~-------k~tvsfY~~e~---~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l 512 (698)
T KOG2314|consen 446 --ESVIAFAWEPHGDK-FAVISGNTV-------KNTVSFYAVET---NIKKPSLVKELDKKFANTVFWSPKGRFVVVAAL 512 (698)
T ss_pred --hheeeeeeccCCCe-EEEEEcccc-------ccceeEEEeec---CCCchhhhhhhcccccceEEEcCCCcEEEEEEe
Confidence 12668999999999 555542211 12224555543 333443333222 33567889999999998873
Q ss_pred cccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEee
Q 004456 319 YKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (752)
Q Consensus 319 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~ 371 (752)
. +..++|+.+|++-.........++.. .-.+.|.|.|+|++..+
T Consensus 513 ~-s~~g~l~F~D~~~a~~k~~~~~eh~~--------at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 513 V-SRRGDLEFYDTDYADLKDTASPEHFA--------ATEVEWDPTGRYVVTSS 556 (698)
T ss_pred c-ccccceEEEecchhhhhhccCccccc--------cccceECCCCCEEEEee
Confidence 3 36678999998742111122222221 11245999999998776
No 206
>PTZ00421 coronin; Provisional
Probab=98.87 E-value=5e-07 Score=97.34 Aligned_cols=200 Identities=11% Similarity=0.010 Sum_probs=121.9
Q ss_pred eeceeEecC-CCCeEEEeeccccccccccCcceEEEEEcccCcc--------eeccCCCCccccccccceEEecCCc-EE
Q 004456 32 KINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--------KPLFESPDICLNAVFGSFVWVNNST-LL 101 (752)
Q Consensus 32 ~~~~~~~SP-DG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~--------~~lt~~~~~~~~~~~~~~~wspdg~-~l 101 (752)
.+....||| |++.||..+ ....|.++++.++.. ..+..+. ..+..+.|+|++. .|
T Consensus 77 ~V~~v~fsP~d~~~LaSgS----------~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~-----~~V~~l~f~P~~~~iL 141 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTAS----------EDGTIMGWGIPEEGLTQNISDPIVHLQGHT-----KKVGIVSFHPSAMNVL 141 (493)
T ss_pred CEEEEEEcCCCCCEEEEEe----------CCCEEEEEecCCCccccccCcceEEecCCC-----CcEEEEEeCcCCCCEE
Confidence 588999999 888887753 346777778765421 1222111 1467889999875 44
Q ss_pred EEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCC-ccccCCc-ccee
Q 004456 102 IFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYT 178 (752)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~-~~~l~~~-~~~~ 178 (752)
+..+. .+.|.+||+ +++ ...+..+ ..+.
T Consensus 142 aSgs~-------------------------------------------------DgtVrIWDl~tg~~~~~l~~h~~~V~ 172 (493)
T PTZ00421 142 ASAGA-------------------------------------------------DMVVNVWDVERGKAVEVIKCHSDQIT 172 (493)
T ss_pred EEEeC-------------------------------------------------CCEEEEEECCCCeEEEEEcCCCCceE
Confidence 43321 157889998 664 3344444 6788
Q ss_pred ccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeE-EecCCCCCCCCCcccCCccccccceeeeeCCCceE
Q 004456 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTL 257 (752)
Q Consensus 179 ~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l 257 (752)
.++|+|||+.|+..+.++ .|.+||+.+++.. .+...... ......|.|++.. +
T Consensus 173 sla~spdG~lLatgs~Dg-------------~IrIwD~rsg~~v~tl~~H~~~------------~~~~~~w~~~~~~-i 226 (493)
T PTZ00421 173 SLEWNLDGSLLCTTSKDK-------------KLNIIDPRDGTIVSSVEAHASA------------KSQRCLWAKRKDL-I 226 (493)
T ss_pred EEEEECCCCEEEEecCCC-------------EEEEEECCCCcEEEEEecCCCC------------cceEEEEcCCCCe-E
Confidence 999999999998876553 7999999866432 22221110 0124689998875 4
Q ss_pred EEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEee--cccceeeeeeecCCceEEEeeecccCceeEEEEcCCCC
Q 004456 258 YWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (752)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 334 (752)
+.+.... .....+.+||+. +...+..... .......+.|++|++.|+.+... ...|.++++..+
T Consensus 227 vt~G~s~--------s~Dr~VklWDlr--~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkg---Dg~Iriwdl~~~ 292 (493)
T PTZ00421 227 ITLGCSK--------SQQRQIMLWDTR--KMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKG---EGNIRCFELMNE 292 (493)
T ss_pred EEEecCC--------CCCCeEEEEeCC--CCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeC---CCeEEEEEeeCC
Confidence 4443211 123468888884 2222332222 22234567799999977765422 234777777663
No 207
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.86 E-value=1.5e-07 Score=97.88 Aligned_cols=289 Identities=14% Similarity=0.077 Sum_probs=141.8
Q ss_pred eeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccc
Q 004456 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (752)
Q Consensus 6 ~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~ 85 (752)
.|.++++.. ++ .+.....|......++||||++|+-+.. ..+++-++|.++.+..+.........
T Consensus 59 ~vsviD~~~----~~--~v~~i~~G~~~~~i~~s~DG~~~~v~n~---------~~~~v~v~D~~tle~v~~I~~~~~~~ 123 (369)
T PF02239_consen 59 TVSVIDLAT----GK--VVATIKVGGNPRGIAVSPDGKYVYVANY---------EPGTVSVIDAETLEPVKTIPTGGMPV 123 (369)
T ss_dssp EEEEEETTS----SS--EEEEEE-SSEEEEEEE--TTTEEEEEEE---------ETTEEEEEETTT--EEEEEE--EE-T
T ss_pred eEEEEECCc----cc--EEEEEecCCCcceEEEcCCCCEEEEEec---------CCCceeEeccccccceeecccccccc
Confidence 455666644 33 3333345667888999999999976542 34789999988877544321111000
Q ss_pred ---cccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEE
Q 004456 86 ---NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (752)
Q Consensus 86 ---~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~ 162 (752)
...+..+.-||+....++... ...+|+++
T Consensus 124 ~~~~~Rv~aIv~s~~~~~fVv~lk------------------------------------------------d~~~I~vV 155 (369)
T PF02239_consen 124 DGPESRVAAIVASPGRPEFVVNLK------------------------------------------------DTGEIWVV 155 (369)
T ss_dssp TTS---EEEEEE-SSSSEEEEEET------------------------------------------------TTTEEEEE
T ss_pred cccCCCceeEEecCCCCEEEEEEc------------------------------------------------cCCeEEEE
Confidence 001223445677665555422 12689999
Q ss_pred cc-CCCc---cccCCccceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccC
Q 004456 163 SL-DGTA---KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (752)
Q Consensus 163 ~~-~G~~---~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 238 (752)
|. +.+. +.+..........|+|||++++...... +.+-++|..++....+.+... ...|....
T Consensus 156 dy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~s------------n~i~viD~~~~k~v~~i~~g~-~p~~~~~~ 222 (369)
T PF02239_consen 156 DYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGS------------NKIAVIDTKTGKLVALIDTGK-KPHPGPGA 222 (369)
T ss_dssp ETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGG------------TEEEEEETTTTEEEEEEE-SS-SBEETTEE
T ss_pred EeccccccceeeecccccccccccCcccceeeeccccc------------ceeEEEeeccceEEEEeeccc-cccccccc
Confidence 98 4322 2222224566889999999998876664 378888888776655433311 11111000
Q ss_pred CccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeee
Q 004456 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETW 318 (752)
Q Consensus 239 ~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~ 318 (752)
+..-....+.|+-.+....+... . ..+.+.+++.. +-...+.+...... ..+..+||+++++....
T Consensus 223 ~~php~~g~vw~~~~~~~~~~~~-i----------g~~~v~v~d~~--~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~ 288 (369)
T PF02239_consen 223 NFPHPGFGPVWATSGLGYFAIPL-I----------GTDPVSVHDDY--AWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTF 288 (369)
T ss_dssp EEEETTTEEEEEEEBSSSSEEEE-E----------E--TTT-STTT--BTSEEEEEE-SSSS---EE--TT-SEEEEE-T
T ss_pred cccCCCcceEEeeccccceeccc-c----------cCCccccchhh--cCeEEEEEECCCCc-ceeecCCCCccEEeecc
Confidence 00001223456544433111111 1 11223334442 11233444433333 55678999999998743
Q ss_pred cccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeE
Q 004456 319 YKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLD 398 (752)
Q Consensus 319 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~ 398 (752)
.......|.++|.++. .....+........ -. +.|++||++++++..+. +| .|.
T Consensus 289 ~~~~~~~v~viD~~tl-~~~~~i~~~~~~~~----~h--~ef~~dG~~v~vS~~~~-----------~~--------~i~ 342 (369)
T PF02239_consen 289 LNPDADTVQVIDKKTL-KVVKTITPGPGKRV----VH--MEFNPDGKEVWVSVWDG-----------NG--------AIV 342 (369)
T ss_dssp T-SSHT-EEEEECCGT-EEEE-HHHHHT--E----EE--EEE-TTSSEEEEEEE-------------TT--------EEE
T ss_pred CCCCCceEEEEECcCc-ceeEEEeccCCCcE----ec--cEECCCCCEEEEEEecC-----------CC--------EEE
Confidence 3334567999999884 12233332222001 01 45899999998887432 11 699
Q ss_pred EEecCCCceeEE
Q 004456 399 LFDINTGSKERI 410 (752)
Q Consensus 399 ~~d~~~g~~~~l 410 (752)
++|.+|.+....
T Consensus 343 v~D~~Tl~~~~~ 354 (369)
T PF02239_consen 343 VYDAKTLKEKKR 354 (369)
T ss_dssp EEETTTTEEEEE
T ss_pred EEECCCcEEEEE
Confidence 999999876443
No 208
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=98.86 E-value=6.1e-08 Score=102.63 Aligned_cols=215 Identities=16% Similarity=0.174 Sum_probs=141.8
Q ss_pred cCCCCCCCCceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccc
Q 004456 12 LLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGS 91 (752)
Q Consensus 12 ~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~ 91 (752)
+..+.+++..+.+.+..+ -+...+||||-++|.-.+. +....|| .+++-...-.-.++.. .+..
T Consensus 435 ~~D~~~~~~~~~L~GH~G--PVyg~sFsPd~rfLlScSE--------D~svRLW--sl~t~s~~V~y~GH~~----PVwd 498 (707)
T KOG0263|consen 435 MLDDDSSGTSRTLYGHSG--PVYGCSFSPDRRFLLSCSE--------DSSVRLW--SLDTWSCLVIYKGHLA----PVWD 498 (707)
T ss_pred hccccCCceeEEeecCCC--ceeeeeecccccceeeccC--------Ccceeee--ecccceeEEEecCCCc----ceee
Confidence 334445677777775543 3888999999999988643 2334455 4445444433322211 2556
Q ss_pred eEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCCCcccc
Q 004456 92 FVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDF 171 (752)
Q Consensus 92 ~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G~~~~l 171 (752)
..|+|-|-+++-.+. + +...+|..|-.-..+-+
T Consensus 499 V~F~P~GyYFatas~----D-------------------------------------------~tArLWs~d~~~PlRif 531 (707)
T KOG0263|consen 499 VQFAPRGYYFATASH----D-------------------------------------------QTARLWSTDHNKPLRIF 531 (707)
T ss_pred EEecCCceEEEecCC----C-------------------------------------------ceeeeeecccCCchhhh
Confidence 788998765554321 1 12456666654444444
Q ss_pred CCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeee
Q 004456 172 GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWR 250 (752)
Q Consensus 172 ~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ws 250 (752)
..+ .++.-+.|.|+..+++-.+.+. .+.+||+.++..+++...... .+..+++|
T Consensus 532 aghlsDV~cv~FHPNs~Y~aTGSsD~-------------tVRlWDv~~G~~VRiF~GH~~------------~V~al~~S 586 (707)
T KOG0263|consen 532 AGHLSDVDCVSFHPNSNYVATGSSDR-------------TVRLWDVSTGNSVRIFTGHKG------------PVTALAFS 586 (707)
T ss_pred cccccccceEEECCcccccccCCCCc-------------eEEEEEcCCCcEEEEecCCCC------------ceEEEEEc
Confidence 555 7777899999999998876653 789999998877777654321 26789999
Q ss_pred eCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEc
Q 004456 251 ADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVC 330 (752)
Q Consensus 251 pDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~ 330 (752)
|+|++ |+..+ ..+.|.+||+. .+.....+....+.+.+++||.||..|+... ..+.|.++|
T Consensus 587 p~Gr~-LaSg~------------ed~~I~iWDl~--~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg----~DnsV~lWD 647 (707)
T KOG0263|consen 587 PCGRY-LASGD------------EDGLIKIWDLA--NGSLVKQLKGHTGTIYSLSFSRDGNVLASGG----ADNSVRLWD 647 (707)
T ss_pred CCCce-Eeecc------------cCCcEEEEEcC--CCcchhhhhcccCceeEEEEecCCCEEEecC----CCCeEEEEE
Confidence 99998 65553 44589999993 2334455666678899999999999998876 333455556
Q ss_pred CCC
Q 004456 331 PGS 333 (752)
Q Consensus 331 ~~~ 333 (752)
+..
T Consensus 648 ~~~ 650 (707)
T KOG0263|consen 648 LTK 650 (707)
T ss_pred chh
Confidence 654
No 209
>PRK10115 protease 2; Provisional
Probab=98.86 E-value=1.9e-06 Score=97.27 Aligned_cols=263 Identities=13% Similarity=0.093 Sum_probs=149.3
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCc--ceeccCCCCccccccccceEEecCCcEEEEEecCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~--~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~ 109 (752)
.+....|||||++|||... ...+...+|+++++++|+ ...+... -..+.|++|++.|+|+.....
T Consensus 128 ~l~~~~~Spdg~~la~~~d-----~~G~E~~~l~v~d~~tg~~l~~~i~~~--------~~~~~w~~D~~~~~y~~~~~~ 194 (686)
T PRK10115 128 TLGGMAITPDNTIMALAED-----FLSRRQYGIRFRNLETGNWYPELLDNV--------EPSFVWANDSWTFYYVRKHPV 194 (686)
T ss_pred EEeEEEECCCCCEEEEEec-----CCCcEEEEEEEEECCCCCCCCccccCc--------ceEEEEeeCCCEEEEEEecCC
Confidence 4677899999999999864 233556789999999887 3444211 134799999999999854211
Q ss_pred CCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CC--CccccCCc--ccee-ccccC
Q 004456 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--TAKDFGTP--AVYT-AVEPS 183 (752)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G--~~~~l~~~--~~~~-~~~~S 183 (752)
.. ...+||+.++ ++ +.+.+... .... ....+
T Consensus 195 ~~-------------------------------------------~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s 231 (686)
T PRK10115 195 TL-------------------------------------------LPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKT 231 (686)
T ss_pred CC-------------------------------------------CCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEc
Confidence 00 1258999999 66 44445443 2222 33445
Q ss_pred CCCceEEEEecccCccccccccCccccEEEEecC--CceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEE
Q 004456 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (752)
Q Consensus 184 pDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~ 261 (752)
.||+++++.+.... .+++++++.+ .+..+.+...... . .......+.. +++.+
T Consensus 232 ~d~~~l~i~~~~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~-------------~-~~~~~~~~~~-ly~~t 286 (686)
T PRK10115 232 TSKHYVVIHLASAT----------TSEVLLLDAELADAEPFVFLPRRKD-------------H-EYSLDHYQHR-FYLRS 286 (686)
T ss_pred CCCCEEEEEEECCc----------cccEEEEECcCCCCCceEEEECCCC-------------C-EEEEEeCCCE-EEEEE
Confidence 69999987655542 2467777742 2222222222111 0 1122233344 66654
Q ss_pred eccCCCCccccCccceEEeccCCCCCCCCCeEEeec--ccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccce
Q 004456 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPR 339 (752)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 339 (752)
..+ ..+..|+.+++. +.++.+.+... ...+..+.++ ++.|++....+ +...|+++++.++ ...
T Consensus 287 n~~--------~~~~~l~~~~~~--~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~-g~~~l~~~~~~~~--~~~ 351 (686)
T PRK10115 287 NRH--------GKNFGLYRTRVR--DEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQR-GLTSLRQINRKTR--EVI 351 (686)
T ss_pred cCC--------CCCceEEEecCC--CcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeC-CEEEEEEEcCCCC--ceE
Confidence 332 133367777773 12344556544 2356677777 55777766444 5567999998653 233
Q ss_pred ecc-ccccccccCCCCCCceeeC--CCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeecc
Q 004456 340 VLF-DRVFENVYSDPGSPMMTRT--STGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESN 414 (752)
Q Consensus 340 ~l~-~~~~~~~~~~~~~p~~~~s--~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~ 414 (752)
.+. ...... .. +..+ +++..+++... + ......+|.+|+.+++.+.|...+
T Consensus 352 ~l~~~~~~~~-----~~--~~~~~~~~~~~~~~~~s--------------s---~~~P~~~y~~d~~~~~~~~l~~~~ 405 (686)
T PRK10115 352 GIAFDDPAYV-----TW--IAYNPEPETSRLRYGYS--------------S---MTTPDTLFELDMDTGERRVLKQTE 405 (686)
T ss_pred EecCCCCceE-----ee--ecccCCCCCceEEEEEe--------------c---CCCCCEEEEEECCCCcEEEEEecC
Confidence 332 211110 00 1123 45555555542 1 244567999999988877776543
No 210
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=5.3e-06 Score=78.99 Aligned_cols=264 Identities=12% Similarity=0.076 Sum_probs=150.8
Q ss_pred cEEEEEcc-CC-CccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCC
Q 004456 157 AQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (752)
Q Consensus 157 ~~i~~~~~-~G-~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 233 (752)
..|.++|. +| ..+.+... .++.-..|.-..+.+++.+...+ ..|...++...+..+......
T Consensus 36 Dsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d-----------~tIryLsl~dNkylRYF~GH~---- 100 (311)
T KOG1446|consen 36 DSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKED-----------DTIRYLSLHDNKYLRYFPGHK---- 100 (311)
T ss_pred CeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCC-----------CceEEEEeecCceEEEcCCCC----
Confidence 36777888 77 55566665 78888899888888888766332 367777777766655444332
Q ss_pred CcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceE
Q 004456 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLAL 313 (752)
Q Consensus 234 ~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l 313 (752)
.-+..+..+|-+.. |++ ......+..||+ ....-+-+...... .-.+|.|+|-.+
T Consensus 101 --------~~V~sL~~sP~~d~---FlS----------~S~D~tvrLWDl---R~~~cqg~l~~~~~-pi~AfDp~GLif 155 (311)
T KOG1446|consen 101 --------KRVNSLSVSPKDDT---FLS----------SSLDKTVRLWDL---RVKKCQGLLNLSGR-PIAAFDPEGLIF 155 (311)
T ss_pred --------ceEEEEEecCCCCe---EEe----------cccCCeEEeeEe---cCCCCceEEecCCC-cceeECCCCcEE
Confidence 22556777887764 332 113447888988 33333333322222 236789999766
Q ss_pred EEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCC
Q 004456 314 VNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGN 393 (752)
Q Consensus 314 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 393 (752)
+.+. . ...|.++|+..-+..|.........+.. .-..+.+|||||+|+.....
T Consensus 156 A~~~--~--~~~IkLyD~Rs~dkgPF~tf~i~~~~~~---ew~~l~FS~dGK~iLlsT~~-------------------- 208 (311)
T KOG1446|consen 156 ALAN--G--SELIKLYDLRSFDKGPFTTFSITDNDEA---EWTDLEFSPDGKSILLSTNA-------------------- 208 (311)
T ss_pred EEec--C--CCeEEEEEecccCCCCceeEccCCCCcc---ceeeeEEcCCCCEEEEEeCC--------------------
Confidence 6654 2 2256667766532333332221111100 01115689999999998732
Q ss_pred CCeeEEEecCCCceeEEeeccchhhhhceeeeecCCcceecccCCCEEEEEEecCCCCcEEEEEECCCCCeeEeecCCCC
Q 004456 394 IPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHP 473 (752)
Q Consensus 394 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~ 473 (752)
..++++|.=+|..+.-+..... .. .......++|||+.++.... ...|.+|++++|.......-+..
T Consensus 209 -s~~~~lDAf~G~~~~tfs~~~~---~~-----~~~~~a~ftPds~Fvl~gs~----dg~i~vw~~~tg~~v~~~~~~~~ 275 (311)
T KOG1446|consen 209 -SFIYLLDAFDGTVKSTFSGYPN---AG-----NLPLSATFTPDSKFVLSGSD----DGTIHVWNLETGKKVAVLRGPNG 275 (311)
T ss_pred -CcEEEEEccCCcEeeeEeeccC---CC-----CcceeEEECCCCcEEEEecC----CCcEEEEEcCCCcEeeEecCCCC
Confidence 1588999888885443332211 00 11134689999998876643 24599999999876654443211
Q ss_pred C-CCcCCCceEEEEEEcCCCcEEEEEEEeCC
Q 004456 474 Y-PTLASLQKEMIKYQRKDGVPLTATLYLPP 503 (752)
Q Consensus 474 ~-~~~~~~~~~~~~~~~~~g~~~~~~l~~P~ 503 (752)
. ..-....+....+.+.+. .| .+|+|.
T Consensus 276 ~~~~~~~fnP~~~mf~sa~s-~l--~fw~p~ 303 (311)
T KOG1446|consen 276 GPVSCVRFNPRYAMFVSASS-NL--VFWLPD 303 (311)
T ss_pred CCccccccCCceeeeeecCc-eE--EEEecc
Confidence 1 122234555555554432 33 344454
No 211
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=98.84 E-value=1.1e-07 Score=87.67 Aligned_cols=121 Identities=12% Similarity=0.076 Sum_probs=72.1
Q ss_pred CcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc---cCcc---ccccchhhhHHHHHhcChhhhc-CCCCC
Q 004456 602 SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP---FGFQ---TEFRTLWEATNVYIEMSPITHA-NKIKK 674 (752)
Q Consensus 602 ~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 674 (752)
+.+.|+|.|+||+.|.+++.+.+ +++ |++.|.......- .+.. ......+-....+.+...+... .....
T Consensus 59 ~~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~~~iG~~~~~~~~e~~~~~~~~~~~l~~l~~~~~~~~~ 135 (187)
T PF05728_consen 59 ENVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQDYIGEQTNPYTGESYELTEEHIEELKALEVPYPTNPE 135 (187)
T ss_pred CCeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHHHhhCccccCCCCccceechHhhhhcceEeccccCCCc
Confidence 45999999999999999998873 445 7788876522110 1110 0000111111111221111111 12246
Q ss_pred CEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHH
Q 004456 675 PILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 737 (752)
Q Consensus 675 P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 737 (752)
++++++++.|.+++ +.++.+.+ +.. ...+.+|++|.+.. .++..+.|.+|+
T Consensus 136 ~~lvll~~~DEvLd--~~~a~~~~---~~~----~~~i~~ggdH~f~~---f~~~l~~i~~f~ 186 (187)
T PF05728_consen 136 RYLVLLQTGDEVLD--YREAVAKY---RGC----AQIIEEGGDHSFQD---FEEYLPQIIAFL 186 (187)
T ss_pred cEEEEEecCCcccC--HHHHHHHh---cCc----eEEEEeCCCCCCcc---HHHHHHHHHHhh
Confidence 89999999999998 76554433 222 34456888998764 678888999886
No 212
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=98.84 E-value=5e-07 Score=83.05 Aligned_cols=210 Identities=17% Similarity=0.137 Sum_probs=111.6
Q ss_pred EEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCC
Q 004456 485 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI 564 (752)
Q Consensus 485 ~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 564 (752)
..+.-.+|..+..|.-+|+...+. +.|+||+..|.+-. . ..+...+.+|+..||.|+..+..
T Consensus 5 hvi~~~~~~~I~vwet~P~~~~~~---~~~tiliA~Gf~rr--------------m-dh~agLA~YL~~NGFhViRyDsl 66 (294)
T PF02273_consen 5 HVIRLEDGRQIRVWETRPKNNEPK---RNNTILIAPGFARR--------------M-DHFAGLAEYLSANGFHVIRYDSL 66 (294)
T ss_dssp EEEEETTTEEEEEEEE---TTS------S-EEEEE-TT-GG--------------G-GGGHHHHHHHHTTT--EEEE---
T ss_pred ceeEcCCCCEEEEeccCCCCCCcc---cCCeEEEecchhHH--------------H-HHHHHHHHHHhhCCeEEEecccc
Confidence 345556899999999999875443 36999999985311 1 11224678999999999995544
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCC--
Q 004456 565 PIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT-- 642 (752)
Q Consensus 565 ~~~g~g~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~-- 642 (752)
.-.|.....-..-.++....++..+++||.+.+. .+++|+--|.-|-+|+.+++.- .+...|...|+.++..+
T Consensus 67 ~HvGlSsG~I~eftms~g~~sL~~V~dwl~~~g~---~~~GLIAaSLSaRIAy~Va~~i--~lsfLitaVGVVnlr~TLe 141 (294)
T PF02273_consen 67 NHVGLSSGDINEFTMSIGKASLLTVIDWLATRGI---RRIGLIAASLSARIAYEVAADI--NLSFLITAVGVVNLRDTLE 141 (294)
T ss_dssp B-------------HHHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTTS----SEEEEES--S-HHHHHH
T ss_pred ccccCCCCChhhcchHHhHHHHHHHHHHHHhcCC---CcchhhhhhhhHHHHHHHhhcc--CcceEEEEeeeeeHHHHHH
Confidence 3344332222333456678899999999998764 6799999999999999999854 36777777788763210
Q ss_pred ------ccCccccc-------------cchhhhH---HHHHh-cChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHH
Q 004456 643 ------PFGFQTEF-------------RTLWEAT---NVYIE-MSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFD 699 (752)
Q Consensus 643 ------~~~~~~~~-------------~~~~~~~---~~~~~-~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~ 699 (752)
..+.+.+. ...|... ..|.. .+....++++.+|++.+++.+|..|. ..+..++..
T Consensus 142 ~al~~Dyl~~~i~~lp~dldfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~l~iP~iaF~A~~D~WV~--q~eV~~~~~ 219 (294)
T PF02273_consen 142 KALGYDYLQLPIEQLPEDLDFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKRLSIPFIAFTANDDDWVK--QSEVEELLD 219 (294)
T ss_dssp HHHSS-GGGS-GGG--SEEEETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT--S-EEEEEETT-TTS---HHHHHHHHT
T ss_pred HHhccchhhcchhhCCCcccccccccchHHHHHHHHHcCCccchhHHHHHhhCCCCEEEEEeCCCcccc--HHHHHHHHH
Confidence 01111000 0001000 00111 13445677889999999999999987 666665555
Q ss_pred HHHhCCCcEEEEEeCCCCccCC
Q 004456 700 ALKGHGALSRLVLLPFEHHVYA 721 (752)
Q Consensus 700 ~l~~~~~~~~~~~~~~~~H~~~ 721 (752)
.+.. ..+++...+|..|...
T Consensus 220 ~~~s--~~~klysl~Gs~HdL~ 239 (294)
T PF02273_consen 220 NINS--NKCKLYSLPGSSHDLG 239 (294)
T ss_dssp T-TT----EEEEEETT-SS-TT
T ss_pred hcCC--CceeEEEecCccchhh
Confidence 4433 3578999999999864
No 213
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.83 E-value=1.3e-06 Score=88.01 Aligned_cols=247 Identities=14% Similarity=0.123 Sum_probs=135.6
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcc-----eeccCCCCccccccccceEEecCCcEEEEEec
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-----KPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~-----~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~ 106 (752)
-+...++-|.|..++.. +..-.+..+|..|-.. |+|--.+. + .+..+.||+.|..|++++-
T Consensus 169 ~Vsal~~Dp~GaR~~sG----------s~Dy~v~~wDf~gMdas~~~fr~l~P~E~---h-~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSG----------SLDYTVKFWDFQGMDASMRSFRQLQPCET---H-QINSLQYSVTGDQILVVSG 234 (641)
T ss_pred EEEEeeecCCCceeeec----------cccceEEEEecccccccchhhhccCcccc---c-ccceeeecCCCCeEEEEec
Confidence 46778999999988774 4556677777777442 44432222 2 4678999999999988743
Q ss_pred CCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc---CCCccccCCccceeccccC
Q 004456 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL---DGTAKDFGTPAVYTAVEPS 183 (752)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~---~G~~~~l~~~~~~~~~~~S 183 (752)
...... ...+|..+.+. ..+.-|..|+ .|.. ..+..-+|.
T Consensus 235 ~aqakl----~DRdG~~~~e~---------------------------~KGDQYI~Dm~nTKGHi------a~lt~g~wh 277 (641)
T KOG0772|consen 235 SAQAKL----LDRDGFEIVEF---------------------------SKGDQYIRDMYNTKGHI------AELTCGCWH 277 (641)
T ss_pred CcceeE----EccCCceeeee---------------------------eccchhhhhhhccCCce------eeeeccccc
Confidence 211100 00000000000 0022222232 2222 445578999
Q ss_pred CCCceEEEEecccCccccccccCccccEEEEecCCce-eEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEe
Q 004456 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (752)
Q Consensus 184 pDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~ 262 (752)
|+.|..+.+.... +.+.+|+++... ..++....... .....+...+|+|||+. |+-.+
T Consensus 278 P~~k~~FlT~s~D------------gtlRiWdv~~~k~q~qVik~k~~~-------g~Rv~~tsC~~nrdg~~-iAagc- 336 (641)
T KOG0772|consen 278 PDNKEEFLTCSYD------------GTLRIWDVNNTKSQLQVIKTKPAG-------GKRVPVTSCAWNRDGKL-IAAGC- 336 (641)
T ss_pred cCcccceEEecCC------------CcEEEEecCCchhheeEEeeccCC-------CcccCceeeecCCCcch-hhhcc-
Confidence 9999998887664 478999886432 22222221111 11122567899999996 44333
Q ss_pred ccCCCCccccCccceEEeccCCCCCCCCCeEEe----ecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccc
Q 004456 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH----KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAP 338 (752)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~----~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 338 (752)
..+.|.+|+.... +..+.... .....+.+++||+||++|+...+++ .|.++|+... .++
T Consensus 337 -----------~DGSIQ~W~~~~~-~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~----tLKvWDLrq~-kkp 399 (641)
T KOG0772|consen 337 -----------LDGSIQIWDKGSR-TVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD----TLKVWDLRQF-KKP 399 (641)
T ss_pred -----------cCCceeeeecCCc-ccccceEeeeccCCCCceeEEEeccccchhhhccCCC----ceeeeecccc-ccc
Confidence 3446777765211 11222211 2334688999999999998866333 4777777764 232
Q ss_pred eeccccccccccCCCCCCceeeCCCCCeEEEee
Q 004456 339 RVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (752)
Q Consensus 339 ~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~ 371 (752)
......-... + ++. .-+||||.+.|+...
T Consensus 400 L~~~tgL~t~-~--~~t-dc~FSPd~kli~TGt 428 (641)
T KOG0772|consen 400 LNVRTGLPTP-F--PGT-DCCFSPDDKLILTGT 428 (641)
T ss_pred hhhhcCCCcc-C--CCC-ccccCCCceEEEecc
Confidence 2222211111 0 111 135899998665544
No 214
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.82 E-value=3.8e-06 Score=81.28 Aligned_cols=282 Identities=13% Similarity=0.074 Sum_probs=158.9
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCc-ceeccCCCCccccccccceEEecCCcEEEEEecCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~ 110 (752)
.+...+.+|+-.++|-. .+...-|+++..+|+ .-.+|.+.. .|..+.||.||.+|+-.
T Consensus 66 svFavsl~P~~~l~aTG----------GgDD~AflW~~~~ge~~~eltgHKD-----SVt~~~FshdgtlLATG------ 124 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATG----------GGDDLAFLWDISTGEFAGELTGHKD-----SVTCCSFSHDGTLLATG------ 124 (399)
T ss_pred ceEEEEeCCCCceEEec----------CCCceEEEEEccCCcceeEecCCCC-----ceEEEEEccCceEEEec------
Confidence 57778899977666652 334556777777776 555665544 57889999999988853
Q ss_pred CCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CC-CccccCCc-cceeccccCCCCc
Q 004456 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQK 187 (752)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G-~~~~l~~~-~~~~~~~~SpDGk 187 (752)
+ -.++|.++.. +| ....+... ..+..+.|.|-+.
T Consensus 125 d-------------------------------------------msG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~ 161 (399)
T KOG0296|consen 125 D-------------------------------------------MSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAH 161 (399)
T ss_pred C-------------------------------------------CCccEEEEEcccCceEEEeecccCceEEEEeccccc
Confidence 1 1156666666 55 55566544 8899999999998
Q ss_pred eEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCC
Q 004456 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (752)
Q Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~ 267 (752)
.|+..+.+. .+|+|.+..+...++...+... ..-=.|.||||+ ++-..
T Consensus 162 illAG~~DG-------------svWmw~ip~~~~~kv~~Gh~~~------------ct~G~f~pdGKr-~~tgy------ 209 (399)
T KOG0296|consen 162 ILLAGSTDG-------------SVWMWQIPSQALCKVMSGHNSP------------CTCGEFIPDGKR-ILTGY------ 209 (399)
T ss_pred EEEeecCCC-------------cEEEEECCCcceeeEecCCCCC------------cccccccCCCce-EEEEe------
Confidence 888876664 8999999885444443332210 112278999998 44442
Q ss_pred CccccCccceEEeccCCCCCCCCCe-EEeeccc-ceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccc--
Q 004456 268 ANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDL-RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD-- 343 (752)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~-~l~~~~~-~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~-- 343 (752)
..+.|.+|+. +++.+. .+...++ ....+.++.++..++-.. .+ ...+.++..++ +......
T Consensus 210 ------~dgti~~Wn~---ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~-~e---~~~~~~~~~sg--KVv~~~n~~ 274 (399)
T KOG0296|consen 210 ------DDGTIIVWNP---KTGQPLHKITQAEGLELPCISLNLAGSTLTKGN-SE---GVACGVNNGSG--KVVNCNNGT 274 (399)
T ss_pred ------cCceEEEEec---CCCceeEEecccccCcCCccccccccceeEecc-CC---ccEEEEccccc--eEEEecCCC
Confidence 3447888887 544433 3432222 122333444444332221 11 12333333221 1111111
Q ss_pred ------cccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeeccchh
Q 004456 344 ------RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREK 417 (752)
Q Consensus 344 ------~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~ 417 (752)
..... ....-++.||.+=...|..+.++ .|.+||+++.+.+.+...+..
T Consensus 275 ~~~l~~~~e~~---~esve~~~~ss~lpL~A~G~vdG---------------------~i~iyD~a~~~~R~~c~he~~- 329 (399)
T KOG0296|consen 275 VPELKPSQEEL---DESVESIPSSSKLPLAACGSVDG---------------------TIAIYDLAASTLRHICEHEDG- 329 (399)
T ss_pred Cccccccchhh---hhhhhhcccccccchhhcccccc---------------------eEEEEecccchhheeccCCCc-
Confidence 00000 00111233565555555555332 589999988888776554432
Q ss_pred hhhceeeeecCCcceecccCCCEEEEEEecCCCCcEEEEEECCCCCee
Q 004456 418 YFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSS 465 (752)
Q Consensus 418 ~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~~g~~~ 465 (752)
+..+ .|-+ ..+|+.... ...|+.||..+|+.+
T Consensus 330 ----V~~l-------~w~~-t~~l~t~c~----~g~v~~wDaRtG~l~ 361 (399)
T KOG0296|consen 330 ----VTKL-------KWLN-TDYLLTACA----NGKVRQWDARTGQLK 361 (399)
T ss_pred ----eEEE-------EEcC-cchheeecc----CceEEeeeccccceE
Confidence 3333 4555 344433322 346999999988755
No 215
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.81 E-value=1.6e-07 Score=93.86 Aligned_cols=224 Identities=13% Similarity=0.181 Sum_probs=138.1
Q ss_pred cEEEEEcc--CCCc-cccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCC
Q 004456 157 AQLVLGSL--DGTA-KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (752)
Q Consensus 157 ~~i~~~~~--~G~~-~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 232 (752)
..|++|++ +|.. +....+ ..+..++||++|..++-.+.+. .|.+||+++++...-....-.
T Consensus 237 ~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~-------------~lKlwDtETG~~~~~f~~~~~-- 301 (503)
T KOG0282|consen 237 GLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR-------------FLKLWDTETGQVLSRFHLDKV-- 301 (503)
T ss_pred ceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecce-------------eeeeeccccceEEEEEecCCC--
Confidence 68999999 4644 334444 7899999999999998887774 799999999876553333211
Q ss_pred CCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCce
Q 004456 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLA 312 (752)
Q Consensus 233 ~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~ 312 (752)
+.-+.|.||+.. ++++.. ...+|..||+. .+.-.+..-..-+.+..+.|-++|++
T Consensus 302 -----------~~cvkf~pd~~n-~fl~G~-----------sd~ki~~wDiR--s~kvvqeYd~hLg~i~~i~F~~~g~r 356 (503)
T KOG0282|consen 302 -----------PTCVKFHPDNQN-IFLVGG-----------SDKKIRQWDIR--SGKVVQEYDRHLGAILDITFVDEGRR 356 (503)
T ss_pred -----------ceeeecCCCCCc-EEEEec-----------CCCcEEEEecc--chHHHHHHHhhhhheeeeEEccCCce
Confidence 346799999976 666642 33478888883 22222333344556778889999999
Q ss_pred EEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCC
Q 004456 313 LVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEG 392 (752)
Q Consensus 313 l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~ 392 (752)
++.++... .-.||.+...- ..+.+.+.... ..|.+.-.|.+++++..+.++
T Consensus 357 FissSDdk--s~riWe~~~~v---~ik~i~~~~~h------smP~~~~~P~~~~~~aQs~dN------------------ 407 (503)
T KOG0282|consen 357 FISSSDDK--SVRIWENRIPV---PIKNIADPEMH------TMPCLTLHPNGKWFAAQSMDN------------------ 407 (503)
T ss_pred EeeeccCc--cEEEEEcCCCc---cchhhcchhhc------cCcceecCCCCCeehhhccCc------------------
Confidence 99987433 33455554332 22233333322 456677899999999988652
Q ss_pred CCCeeEEEecCCCceeEEeeccchhhhhceeeeecCCcceecccCCCEEEEEEecCCCCcEEEEEECCCC
Q 004456 393 NIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLK 462 (752)
Q Consensus 393 ~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~~g 462 (752)
.|+++.+. .. ...+....|++... .+-.-.+.|||||++|+.-. ..+.++-||..+-
T Consensus 408 ---~i~ifs~~--~~---~r~nkkK~feGh~v-aGys~~v~fSpDG~~l~SGd----sdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 408 ---YIAIFSTV--PP---FRLNKKKRFEGHSV-AGYSCQVDFSPDGRTLCSGD----SDGKVNFWDWKTT 464 (503)
T ss_pred ---eEEEEecc--cc---cccCHhhhhcceec-cCceeeEEEcCCCCeEEeec----CCccEEEeechhh
Confidence 34444321 11 11111112222211 12233579999999987643 2445888887653
No 216
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.80 E-value=2.6e-06 Score=86.00 Aligned_cols=293 Identities=10% Similarity=0.040 Sum_probs=160.9
Q ss_pred eeceeEecCCCCeEEEeecccc-----ccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEec
Q 004456 32 KINFVSWSPDGKRIAFSVRVDE-----EDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~-----~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~ 106 (752)
.+....|||.|+||.--.+... |.....+.++++++|.++|....-......... .+..+.||-|+++++.+
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~-~Wp~~k~s~~D~y~ARv-- 149 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYL-GWPVLKFSIDDKYVARV-- 149 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCccc-ccceeeeeecchhhhhh--
Confidence 4677788888888876655221 122233445777888777764433221111100 12345777777766654
Q ss_pred CCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCCCccccCC----ccceecccc
Q 004456 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGT----PAVYTAVEP 182 (752)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G~~~~l~~----~~~~~~~~~ 182 (752)
-...|+..++++...++.- ..++..+.|
T Consensus 150 ------------------------------------------------v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsi 181 (561)
T COG5354 150 ------------------------------------------------VGSSLYIHEITDNIEEHPFKNLRPVGILDFSI 181 (561)
T ss_pred ------------------------------------------------ccCeEEEEecCCccccCchhhccccceeeEEe
Confidence 2256777776443333221 267889999
Q ss_pred CCCC--ceEEEEecccCccccccccCccccEEEEecCCceeE---EecCCCCCCCCCcccCCccccccceeeeeCCCceE
Q 004456 183 SPDQ--KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR---ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTL 257 (752)
Q Consensus 183 SpDG--k~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l 257 (752)
||-| ..|+|..-.. ..-+..+.++.+-.+... .+.... --.+.|.+.|++ |
T Consensus 182 sP~~n~~~la~~tPEk--------~~kpa~~~i~sIp~~s~l~tk~lfk~~---------------~~qLkW~~~g~~-l 237 (561)
T COG5354 182 SPEGNHDELAYWTPEK--------LNKPAMVRILSIPKNSVLVTKNLFKVS---------------GVQLKWQVLGKY-L 237 (561)
T ss_pred cCCCCCceEEEEcccc--------CCCCcEEEEEEccCCCeeeeeeeEeec---------------ccEEEEecCCce-E
Confidence 9985 4456654332 112345556655422211 112111 236899999999 4
Q ss_pred EEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCcc
Q 004456 258 YWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVA 337 (752)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~ 337 (752)
++...... ..+..--....||++++ .....+..-...+.+.++.|+|+++.++..+.... ..+-..++.++ -
T Consensus 238 l~l~~t~~-ksnKsyfgesnLyl~~~---~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~p--a~~s~~~lr~N--l 309 (561)
T COG5354 238 LVLVMTHT-KSNKSYFGESNLYLLRI---TERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMP--ASVSVFDLRGN--L 309 (561)
T ss_pred EEEEEEee-ecccceeccceEEEEee---cccccceeccccccceeeeecccCCceeEEecccc--cceeecccccc--e
Confidence 44432221 11100112347899988 44444443355778899999999999988774332 23566666653 1
Q ss_pred ceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeeccchh
Q 004456 338 PRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREK 417 (752)
Q Consensus 338 ~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~ 417 (752)
...+.+.... .+.+||.++++++..-+ ..+..+.++|..+. .+.+..-+.
T Consensus 310 ~~~~Pe~~rN---------T~~fsp~~r~il~agF~------------------nl~gni~i~~~~~r-f~~~~~~~~-- 359 (561)
T COG5354 310 RFYFPEQKRN---------TIFFSPHERYILFAGFD------------------NLQGNIEIFDPAGR-FKVAGAFNG-- 359 (561)
T ss_pred EEecCCcccc---------cccccCcccEEEEecCC------------------ccccceEEeccCCc-eEEEEEeec--
Confidence 1112221111 13479999999997633 23345888888643 333311111
Q ss_pred hhhceeeeecCCcceecccCCCEEEEEEe
Q 004456 418 YFETAVALVFGQGEEDINLNQLKILTSKE 446 (752)
Q Consensus 418 ~~~~~~~~~~~~~~~~~s~d~~~l~~~~~ 446 (752)
.+...+.||||+..+.....
T Consensus 360 ---------~n~s~~~wspd~qF~~~~~t 379 (561)
T COG5354 360 ---------LNTSYCDWSPDGQFYDTDTT 379 (561)
T ss_pred ---------CCceEeeccCCceEEEecCC
Confidence 22345789999997765443
No 217
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=98.80 E-value=1.7e-08 Score=111.28 Aligned_cols=129 Identities=18% Similarity=0.155 Sum_probs=89.9
Q ss_pred EEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhC-C-cEEEecCCC-CCCCCC
Q 004456 494 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR-R-FAVLAGPSI-PIIGEG 570 (752)
Q Consensus 494 ~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-G-~~v~~~~~~-~~~g~g 570 (752)
-+...+|.|....+ ..++|+||++|||++..++.. .. ....|+.. + ++|+.++|+ +..|+.
T Consensus 78 cl~l~i~~p~~~~~--~~~~pv~v~ihGG~~~~g~~~--------~~------~~~~~~~~~~~~~vv~~~yRlg~~g~~ 141 (493)
T cd00312 78 CLYLNVYTPKNTKP--GNSLPVMVWIHGGGFMFGSGS--------LY------PGDGLAREGDNVIVVSINYRLGVLGFL 141 (493)
T ss_pred CCeEEEEeCCCCCC--CCCCCEEEEEcCCccccCCCC--------CC------ChHHHHhcCCCEEEEEecccccccccc
Confidence 57788888875432 235899999999987643321 11 12344443 3 888888876 555654
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEccCCCC
Q 004456 571 DKLPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSYN 638 (752)
Q Consensus 571 ~~~~~~~~~~~~~~d~~~~~~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~~~~~--p~~~~~~v~~~~~~~ 638 (752)
............+.|...+++|+++.- ..|+++|.|+|+|.||++++.++... +..|+++|+++|...
T Consensus 142 ~~~~~~~~~n~g~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 142 STGDIELPGNYGLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred cCCCCCCCcchhHHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 332222223445789999999998862 37999999999999999999888762 457999999988654
No 218
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=6.3e-07 Score=84.78 Aligned_cols=257 Identities=13% Similarity=0.049 Sum_probs=149.7
Q ss_pred eceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCc-ceeccCCCCccccccccceEEecCCcEEEEEecCCCCC
Q 004456 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (752)
Q Consensus 33 ~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (752)
..-.+||+-|.+||..+. + +.|.|+|..+-. .+.++.+-. .+.++.||+||+.|+-++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~--------n--G~vvI~D~~T~~iar~lsaH~~-----pi~sl~WS~dgr~LltsS~D---- 86 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCA--------N--GRVVIYDFDTFRIARMLSAHVR-----PITSLCWSRDGRKLLTSSRD---- 86 (405)
T ss_pred cceEEeccCcceeeeecc--------C--CcEEEEEccccchhhhhhcccc-----ceeEEEecCCCCEeeeecCC----
Confidence 556899999999999764 2 567777777744 454533322 36789999999999876431
Q ss_pred CCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCC-ccccCCccceeccccCCCCceE
Q 004456 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKYV 189 (752)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~-~~~l~~~~~~~~~~~SpDGk~l 189 (752)
..|.+||+ +|. ..++.-...+....|.|-.+..
T Consensus 87 ---------------------------------------------~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~ 121 (405)
T KOG1273|consen 87 ---------------------------------------------WSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNK 121 (405)
T ss_pred ---------------------------------------------ceeEEEeccCCCceeEEEccCccceeeeccccCCe
Confidence 47888999 884 3344333666777888876544
Q ss_pred EEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCc
Q 004456 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (752)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~ 269 (752)
++...-+. ..++.+......+.|...+...... ......|.+-|++ ++.-.
T Consensus 122 ~va~~~~~------------sp~vi~~s~~~h~~Lp~d~d~dln~--------sas~~~fdr~g~y-IitGt-------- 172 (405)
T KOG1273|consen 122 CVATIMEE------------SPVVIDFSDPKHSVLPKDDDGDLNS--------SASHGVFDRRGKY-IITGT-------- 172 (405)
T ss_pred EEEEEecC------------CcEEEEecCCceeeccCCCcccccc--------ccccccccCCCCE-EEEec--------
Confidence 44332221 2344444434444444333221110 0122368889997 44432
Q ss_pred cccCccceEEeccCCCCCCCCCeE-Ee-ecccceeeeeeecCCceEEEeeecccCceeEEEEcCC-----CCCccceecc
Q 004456 270 VEVSPRDIIYTQPAEPAEGEKPEI-LH-KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG-----SKDVAPRVLF 342 (752)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~~~~-l~-~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~-----~~~~~~~~l~ 342 (752)
..+.+.++++. +-+... .. .....+.++.++-.|+.|++.+.+. .|..++.. +..+++..
T Consensus 173 ----sKGkllv~~a~---t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDR----vIR~ye~~di~~~~r~~e~e~-- 239 (405)
T KOG1273|consen 173 ----SKGKLLVYDAE---TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDR----VIRTYEISDIDDEGRDGEVEP-- 239 (405)
T ss_pred ----CcceEEEEecc---hheeeeeeeechheeeeEEEEeccCcEEEEecCCc----eEEEEehhhhcccCccCCcCh--
Confidence 45678888883 322111 11 1235677888999999999976222 34444433 21222221
Q ss_pred ccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeeccc
Q 004456 343 DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNR 415 (752)
Q Consensus 343 ~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 415 (752)
.....++.+--.=.-.++|.||.|+...+. ..-.||+|....|...++..++.
T Consensus 240 ~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~--------------------~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 240 EHKLQDVVNKLQWKKCCFSGDGEYVCAGSA--------------------RAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred hHHHHHHHhhhhhhheeecCCccEEEeccc--------------------cceeEEEEecCCcceeeeecCCc
Confidence 111111111000011457999999977762 23469999999999988877665
No 219
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=98.76 E-value=2e-08 Score=99.42 Aligned_cols=217 Identities=19% Similarity=0.134 Sum_probs=122.6
Q ss_pred eEEEEEEcCC-CcEEEEEEEeCCCCCC-CCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEE
Q 004456 482 KEMIKYQRKD-GVPLTATLYLPPGYDQ-SKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (752)
Q Consensus 482 ~~~~~~~~~~-g~~~~~~l~~P~~~~~-~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (752)
...+++.... +.++...+++|..... -..+++|+|++-||.|.. . ....+.+..+++.||+|.
T Consensus 38 ~~~i~~~~~~r~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs~--------------~-~~f~~~A~~lAs~Gf~Va 102 (365)
T COG4188 38 FVTITLNDPQRDRERPVDLRLPQGGTGTVALYLLPLVVLSHGSGSY--------------V-TGFAWLAEHLASYGFVVA 102 (365)
T ss_pred EEEEeccCcccCCccccceeccCCCccccccCcCCeEEecCCCCCC--------------c-cchhhhHHHHhhCceEEE
Confidence 6667776654 6689999999976421 112469999999996421 1 112367889999999999
Q ss_pred ecCCCCCCCCCCCCCCc--------hhHHHHHHHHHHHHHHHHHc---C----CCCCCcEEEEEeChHHHHHHHHHHhCC
Q 004456 560 AGPSIPIIGEGDKLPND--------RFVEQLVSSAEAAVEEVVRR---G----VADPSRIAVGGHSYGAFMTAHLLAHAP 624 (752)
Q Consensus 560 ~~~~~~~~g~g~~~~~~--------~~~~~~~~d~~~~~~~l~~~---~----~~d~~~i~l~G~S~GG~~a~~~~~~~p 624 (752)
.++. .....|+..... ..+-+...|+..++++|.+. + .+|..||+++|||+||+.++.++..+.
T Consensus 103 ~~~h-pgs~~~~~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~ 181 (365)
T COG4188 103 APDH-PGSNAGGAPAAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAEL 181 (365)
T ss_pred eccC-CCcccccCChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhccccc
Confidence 9443 222233221110 01123357888888888877 4 478999999999999999999876543
Q ss_pred Cc---eeEEE---EccCCCCCCCCccCccccccchhhhHHHHHhcC----------hh-------hhcCCCCCCEEEEEe
Q 004456 625 HL---FCCGI---ARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMS----------PI-------THANKIKKPILIIHG 681 (752)
Q Consensus 625 ~~---~~~~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-------~~~~~~~~P~li~~G 681 (752)
+. ...+. ..+...+ ........+....|.....+...+ |. .-+.+++.|++++.|
T Consensus 182 ~~~~~~~~C~~~~~~~~~~~--~~~~~~l~q~~av~~~~~~~~~rDpriravvA~~p~~~~~Fg~tgl~~v~~P~~~~a~ 259 (365)
T COG4188 182 DAEALLQHCESASRICLDPP--GLNGRLLNQCAAVWLPRQAYDLRDPRIRAVVAINPALGMIFGTTGLVKVTDPVLLAAG 259 (365)
T ss_pred cHHHHHHHhhhhhhcccCCC--CcChhhhccccccccchhhhccccccceeeeeccCCcccccccccceeeecceeeecc
Confidence 31 11111 0111000 000000001111111111111111 11 124567899999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCcc
Q 004456 682 EVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHV 719 (752)
Q Consensus 682 ~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 719 (752)
..|.+.| +..+....+..| .+....+..+|++.|.
T Consensus 260 s~D~~aP-~~~~~~~~f~~l--~g~~k~~~~vp~a~h~ 294 (365)
T COG4188 260 SADGFAP-PVTEQIRPFGYL--PGALKYLRLVPGATHF 294 (365)
T ss_pred cccccCC-cccccccccccC--CcchhheeecCCCccc
Confidence 9999876 122222233333 2333467888999995
No 220
>PTZ00420 coronin; Provisional
Probab=98.76 E-value=8.9e-06 Score=88.36 Aligned_cols=229 Identities=10% Similarity=0.099 Sum_probs=123.1
Q ss_pred ccCCc-cceeccccCCC-CceEEEEecccCccccccccCccccEEEEecCCcee--EEecCCCCCCCCCcccCCcccccc
Q 004456 170 DFGTP-AVYTAVEPSPD-QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV--RELCDLPPAEDIPVCYNSVREGMR 245 (752)
Q Consensus 170 ~l~~~-~~~~~~~~SpD-Gk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~ 245 (752)
.+..+ ..+..++|+|+ ++.|+..+.+ +.|.+|++..+.. ..+... ...+.++...+.
T Consensus 69 ~L~gH~~~V~~lafsP~~~~lLASgS~D-------------gtIrIWDi~t~~~~~~~i~~p------~~~L~gH~~~V~ 129 (568)
T PTZ00420 69 KLKGHTSSILDLQFNPCFSEILASGSED-------------LTIRVWEIPHNDESVKEIKDP------QCILKGHKKKIS 129 (568)
T ss_pred EEcCCCCCEEEEEEcCCCCCEEEEEeCC-------------CeEEEEECCCCCccccccccc------eEEeecCCCcEE
Confidence 34444 78899999998 6666665544 3789999864321 111000 001122233477
Q ss_pred ceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCcee
Q 004456 246 SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTR 325 (752)
Q Consensus 246 ~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~ 325 (752)
.++|+|++.. ++.++. ..+.|.+||+ ..+...........+..++|+|||+.|+.+. ....
T Consensus 130 sVaf~P~g~~-iLaSgS-----------~DgtIrIWDl---~tg~~~~~i~~~~~V~SlswspdG~lLat~s----~D~~ 190 (568)
T PTZ00420 130 IIDWNPMNYY-IMCSSG-----------FDSFVNIWDI---ENEKRAFQINMPKKLSSLKWNIKGNLLSGTC----VGKH 190 (568)
T ss_pred EEEECCCCCe-EEEEEe-----------CCCeEEEEEC---CCCcEEEEEecCCcEEEEEECCCCCEEEEEe----cCCE
Confidence 8999999987 444321 2347889998 3333222223445688999999999887765 2335
Q ss_pred EEEEcCCCCCccceeccccccccccCCCCCCc--eeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecC
Q 004456 326 TWLVCPGSKDVAPRVLFDRVFENVYSDPGSPM--MTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDIN 403 (752)
Q Consensus 326 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~--~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~ 403 (752)
|.++|+.++ +.........+... .... ..+++|+.+|+....+. ...+.|.+||+.
T Consensus 191 IrIwD~Rsg--~~i~tl~gH~g~~~---s~~v~~~~fs~d~~~IlTtG~d~-----------------~~~R~VkLWDlr 248 (568)
T PTZ00420 191 MHIIDPRKQ--EIASSFHIHDGGKN---TKNIWIDGLGGDDNYILSTGFSK-----------------NNMREMKLWDLK 248 (568)
T ss_pred EEEEECCCC--cEEEEEecccCCce---eEEEEeeeEcCCCCEEEEEEcCC-----------------CCccEEEEEECC
Confidence 888888874 22211111111000 0000 11358888877765221 122358999987
Q ss_pred C-CceeEEeeccchhhhhceeeeecCCcceecccCCCEEEEEEecCCCCcEEEEEECCCCCeeEeecCC
Q 004456 404 T-GSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFP 471 (752)
Q Consensus 404 ~-g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~~g~~~~lt~~~ 471 (752)
+ ++.......+.. ...+ .+.+.++.+.++.+..+ ...|+.+++..+....|....
T Consensus 249 ~~~~pl~~~~ld~~-----~~~L-----~p~~D~~tg~l~lsGkG---D~tIr~~e~~~~~~~~l~~~~ 304 (568)
T PTZ00420 249 NTTSALVTMSIDNA-----SAPL-----IPHYDESTGLIYLIGKG---DGNCRYYQHSLGSIRKVNEYK 304 (568)
T ss_pred CCCCceEEEEecCC-----ccce-----EEeeeCCCCCEEEEEEC---CCeEEEEEccCCcEEeecccc
Confidence 4 333222221111 0111 12344555555554433 335888887777766666543
No 221
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.76 E-value=1.5e-07 Score=85.63 Aligned_cols=222 Identities=17% Similarity=0.130 Sum_probs=130.0
Q ss_pred EEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCC
Q 004456 485 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI 564 (752)
Q Consensus 485 ~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 564 (752)
..++..||..+.+.++...+ +.+-.+.+-|+. + ..-..+..++..++.+||.|+. +
T Consensus 8 ~~l~~~DG~~l~~~~~pA~~-------~~~g~~~va~a~-----------G---v~~~fYRrfA~~a~~~Gf~Vlt---~ 63 (281)
T COG4757 8 AHLPAPDGYSLPGQRFPADG-------KASGRLVVAGAT-----------G---VGQYFYRRFAAAAAKAGFEVLT---F 63 (281)
T ss_pred cccccCCCccCccccccCCC-------CCCCcEEecccC-----------C---cchhHhHHHHHHhhccCceEEE---E
Confidence 56778899999999985443 133222233321 1 1112234678888899999999 5
Q ss_pred CCCCCCCCCCC------chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC--
Q 004456 565 PIIGEGDKLPN------DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS-- 636 (752)
Q Consensus 565 ~~~g~g~~~~~------~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~-- 636 (752)
+.+|.|++.+. -.+.+-...|+.++|+++++.. ..-....+|||+||.+-..+. +++..-.+.|..++.
T Consensus 64 dyRG~g~S~p~~~~~~~~~~~DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~~-~~~k~~a~~vfG~gagw 140 (281)
T COG4757 64 DYRGIGQSRPASLSGSQWRYLDWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLLG-QHPKYAAFAVFGSGAGW 140 (281)
T ss_pred ecccccCCCccccccCccchhhhhhcchHHHHHHHHhhC--CCCceEEeeccccceeecccc-cCcccceeeEecccccc
Confidence 55666665332 2345556789999999998843 134699999999998776544 444322223322221
Q ss_pred C---C------------CCCCcc------------Ccc-ccccchhhhHHHHHhcC-----------hhhhcCCCCCCEE
Q 004456 637 Y---N------------KTLTPF------------GFQ-TEFRTLWEATNVYIEMS-----------PITHANKIKKPIL 677 (752)
Q Consensus 637 ~---~------------~~~~~~------------~~~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~P~l 677 (752)
. . ....+. ++. ....+...+...|.+.. ..+..+.+.+|+.
T Consensus 141 sg~m~~~~~l~~~~l~~lv~p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~yaaVrtPi~ 220 (281)
T COG4757 141 SGWMGLRERLGAVLLWNLVGPPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYAAVRTPIT 220 (281)
T ss_pred ccchhhhhcccceeeccccccchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHHHhcCcee
Confidence 1 0 000000 000 00011112222232221 1223466789999
Q ss_pred EEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCC----CCccCCccccHHHHHHHHHHHH
Q 004456 678 IIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPF----EHHVYAARENVMHVIWETDRWL 737 (752)
Q Consensus 678 i~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~H~~~~~~~~~~~~~~~~~fl 737 (752)
++...+|+.+| +.....+....++. +.+...++- .||.....+..+...+++++|+
T Consensus 221 ~~~~~DD~w~P--~As~d~f~~~y~nA--pl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 221 FSRALDDPWAP--PASRDAFASFYRNA--PLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred eeccCCCCcCC--HHHHHHHHHhhhcC--cccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 99999999998 88777777766654 566666664 3787543444467777888876
No 222
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.75 E-value=6.6e-07 Score=90.09 Aligned_cols=241 Identities=10% Similarity=0.055 Sum_probs=131.5
Q ss_pred cEEEEEccCC-C-----ccccCCc--cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCC
Q 004456 157 AQLVLGSLDG-T-----AKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLP 228 (752)
Q Consensus 157 ~~i~~~~~~G-~-----~~~l~~~--~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~ 228 (752)
..+..||..| . .++|-.. -.+.+++|||.|..|++.+... ++.++|-+|.+..+.....
T Consensus 189 y~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a-------------qakl~DRdG~~~~e~~KGD 255 (641)
T KOG0772|consen 189 YTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA-------------QAKLLDRDGFEIVEFSKGD 255 (641)
T ss_pred ceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc-------------ceeEEccCCceeeeeeccc
Confidence 5788888866 2 2333222 4677999999999999987764 6677777776655443322
Q ss_pred CCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEee--ccc----cee
Q 004456 229 PAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--LDL----RFR 302 (752)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--~~~----~~~ 302 (752)
-....-..-.++...+..-.|.|+.+. .+.++. ..+.+.+|++. +..+...+.. ..+ .+.
T Consensus 256 QYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s-----------~DgtlRiWdv~--~~k~q~qVik~k~~~g~Rv~~t 321 (641)
T KOG0772|consen 256 QYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCS-----------YDGTLRIWDVN--NTKSQLQVIKTKPAGGKRVPVT 321 (641)
T ss_pred hhhhhhhccCCceeeeeccccccCccc-ceEEec-----------CCCcEEEEecC--CchhheeEEeeccCCCcccCce
Confidence 100000000111223445689999998 555543 34467788874 2233333322 111 245
Q ss_pred eeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEE
Q 004456 303 SVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYIL 382 (752)
Q Consensus 303 ~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~ 382 (752)
.-+|+|||+.|+.+..+. .|-+++..+-...+..... ..+.. ....-.++||+||++|+-...++
T Consensus 322 sC~~nrdg~~iAagc~DG----SIQ~W~~~~~~v~p~~~vk-~AH~~--g~~Itsi~FS~dg~~LlSRg~D~-------- 386 (641)
T KOG0772|consen 322 SCAWNRDGKLIAAGCLDG----SIQIWDKGSRTVRPVMKVK-DAHLP--GQDITSISFSYDGNYLLSRGFDD-------- 386 (641)
T ss_pred eeecCCCcchhhhcccCC----ceeeeecCCcccccceEee-eccCC--CCceeEEEeccccchhhhccCCC--------
Confidence 567999999988766222 2444443221111111111 11100 00233477999999998776332
Q ss_pred EccCCCCCCCCCCeeEEEecCCC-ceeEEeeccchhhhhceeeeecCCcceecccCCCEEEEEEecCC--CCcEEEEEEC
Q 004456 383 LNGRGFTPEGNIPFLDLFDINTG-SKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKT--EITQYHILSW 459 (752)
Q Consensus 383 ~~~~g~~~~~~~~~l~~~d~~~g-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~--~~~~i~~~d~ 459 (752)
.|.+||+..- +.-.++.+- ... ....++.||||.+.|+.-.+..+ .++.|+.+|.
T Consensus 387 -------------tLKvWDLrq~kkpL~~~tgL--------~t~-~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~ 444 (641)
T KOG0772|consen 387 -------------TLKVWDLRQFKKPLNVRTGL--------PTP-FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR 444 (641)
T ss_pred -------------ceeeeeccccccchhhhcCC--------Ccc-CCCCccccCCCceEEEecccccCCCCCceEEEEec
Confidence 4889998532 222122211 111 22456899999997776554332 4556887775
Q ss_pred CC
Q 004456 460 PL 461 (752)
Q Consensus 460 ~~ 461 (752)
.+
T Consensus 445 ~t 446 (641)
T KOG0772|consen 445 MT 446 (641)
T ss_pred cc
Confidence 54
No 223
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.73 E-value=3e-07 Score=86.94 Aligned_cols=249 Identities=12% Similarity=0.122 Sum_probs=145.4
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCccee-ccCCCCc---cccccccceEEecCCcEEEEEecC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDI---CLNAVFGSFVWVNNSTLLIFTIPS 107 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~-lt~~~~~---~~~~~~~~~~wspdg~~l~~~~~~ 107 (752)
...-.+|||||++|+..+- + +=|-+++..+|+.+. |-..... -+...+..+.||.|++.|+-.+.
T Consensus 215 h~EcA~FSPDgqyLvsgSv--------D--GFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsq- 283 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSV--------D--GFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQ- 283 (508)
T ss_pred chhheeeCCCCceEeeccc--------c--ceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCc-
Confidence 3556899999999988532 3 445566667777544 2211110 11224567789999988875421
Q ss_pred CCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCC-ccccCCc--cceeccccC
Q 004456 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP--AVYTAVEPS 183 (752)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~-~~~l~~~--~~~~~~~~S 183 (752)
.++|.+|.. +|. .+++... .++..+.||
T Consensus 284 ------------------------------------------------DGkIKvWri~tG~ClRrFdrAHtkGvt~l~FS 315 (508)
T KOG0275|consen 284 ------------------------------------------------DGKIKVWRIETGQCLRRFDRAHTKGVTCLSFS 315 (508)
T ss_pred ------------------------------------------------CCcEEEEEEecchHHHHhhhhhccCeeEEEEc
Confidence 157788887 884 4555433 788999999
Q ss_pred CCCceEEEEecccCccccccccCccccEEEEecCCcee-EEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEe
Q 004456 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (752)
Q Consensus 184 pDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~ 262 (752)
.|+.+|+-.+.+. .+.+.-+.+++. +++ .++.-.+.+..|++||.+ ++-++
T Consensus 316 rD~SqiLS~sfD~-------------tvRiHGlKSGK~LKEf-------------rGHsSyvn~a~ft~dG~~-iisaS- 367 (508)
T KOG0275|consen 316 RDNSQILSASFDQ-------------TVRIHGLKSGKCLKEF-------------RGHSSYVNEATFTDDGHH-IISAS- 367 (508)
T ss_pred cCcchhhcccccc-------------eEEEeccccchhHHHh-------------cCccccccceEEcCCCCe-EEEec-
Confidence 9999998876663 455555554422 221 122233567899999998 55553
Q ss_pred ccCCCCccccCccceEEeccCCCCCCCC-CeEE--eecccceeeeeeecCCc--eEEEeeecccCceeEEEEcCCCCCcc
Q 004456 263 QDRGDANVEVSPRDIIYTQPAEPAEGEK-PEIL--HKLDLRFRSVSWCDDSL--ALVNETWYKTSQTRTWLVCPGSKDVA 337 (752)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~l--~~~~~~~~~~~~spDg~--~l~~~~~~~~~~~~l~~~~~~~~~~~ 337 (752)
..+.+-+|+. ++.+ .... ...+..+.++-.-|.+. .+++. ..+.+|++++.+- .
T Consensus 368 -----------sDgtvkvW~~---KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN-----rsntv~imn~qGQ--v 426 (508)
T KOG0275|consen 368 -----------SDGTVKVWHG---KTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN-----RSNTVYIMNMQGQ--V 426 (508)
T ss_pred -----------CCccEEEecC---cchhhhhhccCCCCcccceeEEEcCCCCceEEEEc-----CCCeEEEEeccce--E
Confidence 3345667765 3322 1111 12233344444445442 23332 3346999999872 2
Q ss_pred ceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeec
Q 004456 338 PRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 413 (752)
Q Consensus 338 ~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~ 413 (752)
.+..+.+.... ..+-.-+.||.|.+++....+. .+|-+...+|+.++....
T Consensus 427 VrsfsSGkREg----GdFi~~~lSpkGewiYcigED~---------------------vlYCF~~~sG~LE~tl~V 477 (508)
T KOG0275|consen 427 VRSFSSGKREG----GDFINAILSPKGEWIYCIGEDG---------------------VLYCFSVLSGKLERTLPV 477 (508)
T ss_pred EeeeccCCccC----CceEEEEecCCCcEEEEEccCc---------------------EEEEEEeecCceeeeeec
Confidence 23333333221 0111234799999998886332 488888888887665443
No 224
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.72 E-value=9.1e-06 Score=79.39 Aligned_cols=227 Identities=13% Similarity=0.088 Sum_probs=137.1
Q ss_pred eeceeEecC-CCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCC
Q 004456 32 KINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (752)
Q Consensus 32 ~~~~~~~SP-DG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~ 110 (752)
+...+..+| ++..+||..+. +.-++++|..+|+..+....+..+ ..++.-.|||||++||.+-.+-..
T Consensus 6 RgH~~a~~p~~~~avafaRRP---------G~~~~v~D~~~g~~~~~~~a~~gR--HFyGHg~fs~dG~~LytTEnd~~~ 74 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRP---------GTFALVFDCRTGQLLQRLWAPPGR--HFYGHGVFSPDGRLLYTTENDYET 74 (305)
T ss_pred cccceeeCCCCCeEEEEEeCC---------CcEEEEEEcCCCceeeEEcCCCCC--EEecCEEEcCCCCEEEEeccccCC
Confidence 466788999 67777787652 267889999999876544333322 245678999999988765221111
Q ss_pred CCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCCCcccc---CCc-cceeccccCCCC
Q 004456 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDF---GTP-AVYTAVEPSPDQ 186 (752)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G~~~~l---~~~-~~~~~~~~SpDG 186 (752)
..+.|-++|.....+++ ..+ -+...+.|.|||
T Consensus 75 --------------------------------------------g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG 110 (305)
T PF07433_consen 75 --------------------------------------------GRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDG 110 (305)
T ss_pred --------------------------------------------CcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCC
Confidence 23788899996433333 333 566788999999
Q ss_pred ceEEEEecccC---cc-cc-ccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEE
Q 004456 187 KYVLITSMHRP---YS-YK-VPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (752)
Q Consensus 187 k~l~~~~~~~~---~~-~~-~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~ 261 (752)
+.|++....-. .. .. .-....+..|...|..+++...-...+.. -...++|.+++++||. +++..
T Consensus 111 ~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~--------~~~lSiRHLa~~~~G~--V~~a~ 180 (305)
T PF07433_consen 111 ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD--------LHQLSIRHLAVDGDGT--VAFAM 180 (305)
T ss_pred CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc--------ccccceeeEEecCCCc--EEEEE
Confidence 99988754321 11 00 00112235667776666654332222111 1124488999999998 66665
Q ss_pred eccCCCCccccCccceEEeccCCCCCCCCCeEEe-------ecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCC
Q 004456 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-------KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (752)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 334 (752)
...+.... ..-.+.++.. ++..+.+. ...+.+.++++++||..++.++... +.+.++|..++
T Consensus 181 Q~qg~~~~----~~PLva~~~~----g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG---g~~~~~d~~tg 249 (305)
T PF07433_consen 181 QYQGDPGD----APPLVALHRR----GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG---GRVAVWDAATG 249 (305)
T ss_pred ecCCCCCc----cCCeEEEEcC----CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC---CEEEEEECCCC
Confidence 54433211 1224444443 22233322 3346789999999999999988444 24777787774
No 225
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.72 E-value=1.8e-06 Score=80.12 Aligned_cols=195 Identities=17% Similarity=0.234 Sum_probs=119.3
Q ss_pred eeceeEecCC-CCeEEEeeccccccccccCcceEEEEEcccCc---ceeccCCCCccccccccceEEecCCcEEEEEecC
Q 004456 32 KINFVSWSPD-GKRIAFSVRVDEEDNVSSCKLRVWIADAETGE---AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPS 107 (752)
Q Consensus 32 ~~~~~~~SPD-G~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~---~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~ 107 (752)
++...+|+|- |..||-. +....|.+++..++. .+.++.... ...++..+|||.|++|+..+-+
T Consensus 16 r~W~~awhp~~g~ilAsc----------g~Dk~vriw~~~~~~s~~ck~vld~~h---krsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASC----------GTDKAVRIWSTSSGDSWTCKTVLDDGH---KRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred cEEEEEeccCCceEEEee----------cCCceEEEEecCCCCcEEEEEeccccc---hheeeeeeecCCCcEEEEeecc
Confidence 6888999999 7755553 334677888766433 232322222 2258899999999998876432
Q ss_pred CCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCcc---ccCCc-cceecccc
Q 004456 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK---DFGTP-AVYTAVEP 182 (752)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~---~l~~~-~~~~~~~~ 182 (752)
..+-++.- +|+.. .|-.+ ..+..++|
T Consensus 83 -------------------------------------------------~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaw 113 (312)
T KOG0645|consen 83 -------------------------------------------------ATVVIWKKEDGEFECVATLEGHENEVKCVAW 113 (312)
T ss_pred -------------------------------------------------ceEEEeecCCCceeEEeeeeccccceeEEEE
Confidence 12222222 44322 22223 67889999
Q ss_pred CCCCceEEEEecccCccccccccCccccEEEEecCCceeE-EecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEE
Q 004456 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (752)
Q Consensus 183 SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~ 261 (752)
|++|++||--+.++ .+|+|..+..+.. .+.-+. .+.--+..+.|.|.-. |+|..
T Consensus 114 s~sG~~LATCSRDK-------------SVWiWe~deddEfec~aVL~----------~HtqDVK~V~WHPt~d--lL~S~ 168 (312)
T KOG0645|consen 114 SASGNYLATCSRDK-------------SVWIWEIDEDDEFECIAVLQ----------EHTQDVKHVIWHPTED--LLFSC 168 (312)
T ss_pred cCCCCEEEEeeCCC-------------eEEEEEecCCCcEEEEeeec----------cccccccEEEEcCCcc--eeEEe
Confidence 99999999987775 7999988744322 211111 0111156789999766 66665
Q ss_pred eccCCCCccccCccceEEeccCCCCCCC---CCeEEeecccceeeeeeecCCceEEEeeecccCceeEEE
Q 004456 262 AQDRGDANVEVSPRDIIYTQPAEPAEGE---KPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWL 328 (752)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~ 328 (752)
. +.+.|.++.-++ +. ..+.|......+..++|.+.|..|+..+++ ..-.||+
T Consensus 169 S-----------YDnTIk~~~~~~--dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD--~tv~Iw~ 223 (312)
T KOG0645|consen 169 S-----------YDNTIKVYRDED--DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDD--GTVSIWR 223 (312)
T ss_pred c-----------cCCeEEEEeecC--CCCeeEEEEecCccceEEEEEecCCCceEEEecCC--cceEeee
Confidence 3 333444444321 22 234455555578899999999999887733 3445777
No 226
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.71 E-value=6.4e-07 Score=95.14 Aligned_cols=87 Identities=13% Similarity=-0.004 Sum_probs=62.6
Q ss_pred hhHHHHHhCCcEEEecCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH----HHH
Q 004456 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAH----LLA 621 (752)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~----~~~ 621 (752)
.+..+|+++||.|++++- ..-+..... ..+++.++.+.++++.+++... ..+|.++|+|+||.+++. +++
T Consensus 238 SlVr~lv~qG~~VflIsW---~nP~~~~r~-~~ldDYv~~i~~Ald~V~~~tG--~~~vnl~GyC~GGtl~a~~~a~~aA 311 (560)
T TIGR01839 238 SFVQYCLKNQLQVFIISW---RNPDKAHRE-WGLSTYVDALKEAVDAVRAITG--SRDLNLLGACAGGLTCAALVGHLQA 311 (560)
T ss_pred hHHHHHHHcCCeEEEEeC---CCCChhhcC-CCHHHHHHHHHHHHHHHHHhcC--CCCeeEEEECcchHHHHHHHHHHHh
Confidence 467899999999999553 222222111 1234444678889999987643 468999999999999997 677
Q ss_pred hCCC-ceeEEEEccCCCC
Q 004456 622 HAPH-LFCCGIARSGSYN 638 (752)
Q Consensus 622 ~~p~-~~~~~v~~~~~~~ 638 (752)
++++ +++.+++++...|
T Consensus 312 ~~~~~~V~sltllatplD 329 (560)
T TIGR01839 312 LGQLRKVNSLTYLVSLLD 329 (560)
T ss_pred cCCCCceeeEEeeecccc
Confidence 7775 7999888877655
No 227
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.71 E-value=1e-06 Score=96.61 Aligned_cols=145 Identities=15% Similarity=0.100 Sum_probs=90.7
Q ss_pred cEEEEEccCCCccccCCccceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcc
Q 004456 157 AQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVC 236 (752)
Q Consensus 157 ~~i~~~~~~G~~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 236 (752)
++||+++..|+.++++.......+.|||||+.|+|.+......+.. ...-..++++.++++++.++ ...
T Consensus 379 s~Lwv~~~gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~-~~~~~gql~~~~vd~ge~~~--~~~-------- 447 (591)
T PRK13616 379 SSLWVGPLGGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVI-RDPATGQLARTPVDASAVAS--RVP-------- 447 (591)
T ss_pred eEEEEEeCCCcceeeecCCCCCCceECCCCCceEEEecCcceEEEe-ccCCCceEEEEeccCchhhh--ccC--------
Confidence 6899999877678887765588999999999999986542110000 01112466666666665443 111
Q ss_pred cCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCC-----eEEeecccc-eeeeeeecCC
Q 004456 237 YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-----EILHKLDLR-FRSVSWCDDS 310 (752)
Q Consensus 237 ~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~l~~~~~~-~~~~~~spDg 310 (752)
.++.++.|||||++ |+|+.. ++|++..+....+++. +.|...... ..++.|.+|+
T Consensus 448 -----g~Issl~wSpDG~R-iA~i~~-------------g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~ 508 (591)
T PRK13616 448 -----GPISELQLSRDGVR-AAMIIG-------------GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGD 508 (591)
T ss_pred -----CCcCeEEECCCCCE-EEEEEC-------------CEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCC
Confidence 23778999999999 888751 2566622211133432 224433333 4778999999
Q ss_pred ceEEEeeecccCceeEEEEcCCCC
Q 004456 311 LALVNETWYKTSQTRTWLVCPGSK 334 (752)
Q Consensus 311 ~~l~~~~~~~~~~~~l~~~~~~~~ 334 (752)
. |+.... .....+|.+++++.
T Consensus 509 ~-L~V~~~--~~~~~v~~v~vDG~ 529 (591)
T PRK13616 509 S-LVVGRS--DPEHPVWYVNLDGS 529 (591)
T ss_pred E-EEEEec--CCCCceEEEecCCc
Confidence 8 554432 24456999999985
No 228
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.70 E-value=4.7e-06 Score=97.37 Aligned_cols=230 Identities=12% Similarity=0.056 Sum_probs=131.7
Q ss_pred eeceeEecCC-CCeEEEeeccccccccccCcceEEEEEcccCccee-ccCCCCccccccccceEEec-CCcEEEEEecCC
Q 004456 32 KINFVSWSPD-GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVN-NSTLLIFTIPSS 108 (752)
Q Consensus 32 ~~~~~~~SPD-G~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~-lt~~~~~~~~~~~~~~~wsp-dg~~l~~~~~~~ 108 (752)
.+....|+|. +++||.. +....|.++|+.+++... +..+.. .+..+.|+| |+..|+..+.
T Consensus 534 ~v~~l~~~~~~~~~las~----------~~Dg~v~lWd~~~~~~~~~~~~H~~-----~V~~l~~~p~~~~~L~Sgs~-- 596 (793)
T PLN00181 534 KLSGICWNSYIKSQVASS----------NFEGVVQVWDVARSQLVTEMKEHEK-----RVWSIDYSSADPTLLASGSD-- 596 (793)
T ss_pred ceeeEEeccCCCCEEEEE----------eCCCeEEEEECCCCeEEEEecCCCC-----CEEEEEEcCCCCCEEEEEcC--
Confidence 4677889875 6666654 345789999988776433 322222 467889997 6776665422
Q ss_pred CCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCC-ccccCCccceecccc-CCC
Q 004456 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEP-SPD 185 (752)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~-~~~l~~~~~~~~~~~-SpD 185 (752)
.+.|.+||+ ++. ...+.....+..+.| +++
T Consensus 597 -----------------------------------------------Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~ 629 (793)
T PLN00181 597 -----------------------------------------------DGSVKLWSINQGVSIGTIKTKANICCVQFPSES 629 (793)
T ss_pred -----------------------------------------------CCEEEEEECCCCcEEEEEecCCCeEEEEEeCCC
Confidence 157888888 553 233332355667788 567
Q ss_pred CceEEEEecccCccccccccCccccEEEEecCCcee--EEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEec
Q 004456 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV--RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (752)
Q Consensus 186 Gk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~ 263 (752)
|+.|+..+.+ +.|.+||+..... ..+... ...+..+.|+ |+.. |+..+
T Consensus 630 g~~latgs~d-------------g~I~iwD~~~~~~~~~~~~~h-------------~~~V~~v~f~-~~~~-lvs~s-- 679 (793)
T PLN00181 630 GRSLAFGSAD-------------HKVYYYDLRNPKLPLCTMIGH-------------SKTVSYVRFV-DSST-LVSSS-- 679 (793)
T ss_pred CCEEEEEeCC-------------CeEEEEECCCCCccceEecCC-------------CCCEEEEEEe-CCCE-EEEEE--
Confidence 9998887655 3799999875431 122211 1225678887 6665 44443
Q ss_pred cCCCCccccCccceEEeccCCCCC----CCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccce
Q 004456 264 DRGDANVEVSPRDIIYTQPAEPAE----GEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPR 339 (752)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 339 (752)
..+.|.+||+.... ......+......+..++|+|+++.|+.++ ....+++++.... .+.
T Consensus 680 ----------~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs----~D~~v~iw~~~~~--~~~ 743 (793)
T PLN00181 680 ----------TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS----ETNEVFVYHKAFP--MPV 743 (793)
T ss_pred ----------CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe----CCCEEEEEECCCC--Cce
Confidence 33467788773110 112233433444567788999999888876 2334666665442 111
Q ss_pred ecccccccc------ccC-CCCCCceeeCCCCCeEEEee
Q 004456 340 VLFDRVFEN------VYS-DPGSPMMTRTSTGTNVIAKI 371 (752)
Q Consensus 340 ~l~~~~~~~------~~~-~~~~p~~~~s~dg~~l~~~~ 371 (752)
......... ... ....-.++|+++|..|+...
T Consensus 744 ~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~ 782 (793)
T PLN00181 744 LSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAAN 782 (793)
T ss_pred EEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEec
Confidence 100000000 000 00122467999999887776
No 229
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=9.4e-07 Score=85.25 Aligned_cols=238 Identities=15% Similarity=0.119 Sum_probs=134.4
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEE-EEEecCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLL-IFTIPSSRR 110 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l-~~~~~~~~~ 110 (752)
..+..+|.+ ..++|++. ..+..|.+++.....+..|+..... .+..++|-|-+... +..-. +
T Consensus 100 dlr~~aWhq--H~~~fava--------~nddvVriy~ksst~pt~Lks~sQr----nvtclawRPlsaselavgCr---~ 162 (445)
T KOG2139|consen 100 DLRGVAWHQ--HIIAFAVA--------TNDDVVRIYDKSSTCPTKLKSVSQR----NVTCLAWRPLSASELAVGCR---A 162 (445)
T ss_pred ceeeEeech--hhhhhhhh--------ccCcEEEEeccCCCCCceecchhhc----ceeEEEeccCCcceeeeeec---c
Confidence 477889988 67777654 3446677777666666666544332 57789999986643 32211 0
Q ss_pred CCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCCCc-----------cccC---Cccc
Q 004456 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTA-----------KDFG---TPAV 176 (752)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G~~-----------~~l~---~~~~ 176 (752)
. --||..+..+.. -++. .+..
T Consensus 163 g---------------------------------------------IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~p 197 (445)
T KOG2139|consen 163 G---------------------------------------------ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNP 197 (445)
T ss_pred e---------------------------------------------eEEEEcCcccccccccccccccchhheeCCCCce
Confidence 0 112222221111 1111 1256
Q ss_pred eeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCce
Q 004456 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPST 256 (752)
Q Consensus 177 ~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~ 256 (752)
+.+..|.+||..++-.+... ..|.+||.+++....|..... .++.-+.|||||.+
T Consensus 198 Vtsmqwn~dgt~l~tAS~gs------------ssi~iWdpdtg~~~pL~~~gl------------gg~slLkwSPdgd~- 252 (445)
T KOG2139|consen 198 VTSMQWNEDGTILVTASFGS------------SSIMIWDPDTGQKIPLIPKGL------------GGFSLLKWSPDGDV- 252 (445)
T ss_pred eeEEEEcCCCCEEeecccCc------------ceEEEEcCCCCCcccccccCC------------CceeeEEEcCCCCE-
Confidence 77999999999998877664 478999999987777662211 22456899999996
Q ss_pred EEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCc
Q 004456 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDV 336 (752)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~ 336 (752)
|+-+. -+ . ...++......+.++..+. .+++....|||+|+.|+|+.... ..||.....+...
T Consensus 253 lfaAt-~d---------a--vfrlw~e~q~wt~erw~lg--sgrvqtacWspcGsfLLf~~sgs---p~lysl~f~~~~~ 315 (445)
T KOG2139|consen 253 LFAAT-CD---------A--VFRLWQENQSWTKERWILG--SGRVQTACWSPCGSFLLFACSGS---PRLYSLTFDGEDS 315 (445)
T ss_pred EEEec-cc---------c--eeeeehhcccceecceecc--CCceeeeeecCCCCEEEEEEcCC---ceEEEEeecCCCc
Confidence 43332 11 1 1222212111223333333 33888899999999999986322 3466665544211
Q ss_pred cce---------eccccccccccC-----CCCCCceeeCCCCCeEEEeeee
Q 004456 337 APR---------VLFDRVFENVYS-----DPGSPMMTRTSTGTNVIAKIKK 373 (752)
Q Consensus 337 ~~~---------~l~~~~~~~~~~-----~~~~p~~~~s~dg~~l~~~~~~ 373 (752)
.-. .+.+.+.-.... -...-.++|.|.|.||++.-.+
T Consensus 316 ~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 316 VFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred cccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 101 111111100000 0112247899999999998744
No 230
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.68 E-value=1.5e-06 Score=82.34 Aligned_cols=167 Identities=13% Similarity=0.188 Sum_probs=95.0
Q ss_pred cEEEEEccCC-CccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEec----CCc--eeEEecCCC
Q 004456 157 AQLVLGSLDG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTT----DGK--LVRELCDLP 228 (752)
Q Consensus 157 ~~i~~~~~~G-~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~----~~~--~~~~l~~~~ 228 (752)
..|.+|++.| ....+... -.-...+.||||++|+...... ++.+|++ +|. +++++..+.
T Consensus 209 t~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTp-------------DVkVwE~~f~kdG~fqev~rvf~Lk 275 (420)
T KOG2096|consen 209 TKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTP-------------DVKVWEPIFTKDGTFQEVKRVFSLK 275 (420)
T ss_pred CcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCC-------------CceEEEEEeccCcchhhhhhhheec
Confidence 5789999988 44555444 5666889999999999986653 6677764 222 222322222
Q ss_pred CCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCC-CC-CCCCCeEEee-------ccc
Q 004456 229 PAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAE-PA-EGEKPEILHK-------LDL 299 (752)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-~~~~~~~l~~-------~~~ 299 (752)
+ ..-.+..++|||++++ ++-++ ..+.+.+||.+ .+ .++.++.|-. ...
T Consensus 276 G----------H~saV~~~aFsn~S~r-~vtvS------------kDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~ 332 (420)
T KOG2096|consen 276 G----------HQSAVLAAAFSNSSTR-AVTVS------------KDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGS 332 (420)
T ss_pred c----------chhheeeeeeCCCcce-eEEEe------------cCCcEEEeeccceEecCCCchHhhcCCcchhhcCC
Confidence 1 2223556788888887 55554 23344444441 01 1222333222 222
Q ss_pred ceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEee
Q 004456 300 RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (752)
Q Consensus 300 ~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~ 371 (752)
..-.++.||.|+.|+.+. ...|..+...++ +...-.+..-+. ..-.++|++||++++-..
T Consensus 333 ~p~RL~lsP~g~~lA~s~-----gs~l~~~~se~g--~~~~~~e~~h~~-----~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 333 EPVRLELSPSGDSLAVSF-----GSDLKVFASEDG--KDYPELEDIHST-----TISSISYSSDGKYIATCG 392 (420)
T ss_pred CceEEEeCCCCcEEEeec-----CCceEEEEcccC--ccchhHHHhhcC-----ceeeEEecCCCcEEeeec
Confidence 334678999999998875 123666665553 212111111111 122378999999998775
No 231
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.68 E-value=4.4e-07 Score=90.77 Aligned_cols=222 Identities=10% Similarity=0.045 Sum_probs=138.5
Q ss_pred ceeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCcc
Q 004456 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (752)
Q Consensus 5 ~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~ 84 (752)
..|+|+++-. ..+-.+...+... -+...+||++|..++.+ +....|-++|+++|+...-.....
T Consensus 237 ~~vklW~vy~--~~~~lrtf~gH~k--~Vrd~~~s~~g~~fLS~----------sfD~~lKlwDtETG~~~~~f~~~~-- 300 (503)
T KOG0282|consen 237 GLVKLWNVYD--DRRCLRTFKGHRK--PVRDASFNNCGTSFLSA----------SFDRFLKLWDTETGQVLSRFHLDK-- 300 (503)
T ss_pred ceEEEEEEec--Ccceehhhhcchh--hhhhhhccccCCeeeee----------ecceeeeeeccccceEEEEEecCC--
Confidence 3567777744 2233333333333 48889999999999876 556788889999998654332222
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc
Q 004456 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (752)
Q Consensus 85 ~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~ 164 (752)
......+.||+..++++.. ....|..||.
T Consensus 301 ---~~~cvkf~pd~~n~fl~G~------------------------------------------------sd~ki~~wDi 329 (503)
T KOG0282|consen 301 ---VPTCVKFHPDNQNIFLVGG------------------------------------------------SDKKIRQWDI 329 (503)
T ss_pred ---CceeeecCCCCCcEEEEec------------------------------------------------CCCcEEEEec
Confidence 2456789999987877632 1267889998
Q ss_pred -CCCcccc-CCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCcc
Q 004456 165 -DGTAKDF-GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (752)
Q Consensus 165 -~G~~~~l-~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (752)
+|++.+- ..+ +.+..+.|=|+|++.+.++.+. .+.+|+-...-...+-..+....
T Consensus 330 Rs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdk-------------s~riWe~~~~v~ik~i~~~~~hs--------- 387 (503)
T KOG0282|consen 330 RSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDK-------------SVRIWENRIPVPIKNIADPEMHT--------- 387 (503)
T ss_pred cchHHHHHHHhhhhheeeeEEccCCceEeeeccCc-------------cEEEEEcCCCccchhhcchhhcc---------
Confidence 8865443 333 8889999999999998887664 67777765442222111111111
Q ss_pred ccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEe---ecccceeeeeeecCCceEEEeee
Q 004456 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH---KLDLRFRSVSWCDDSLALVNETW 318 (752)
Q Consensus 242 ~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~---~~~~~~~~~~~spDg~~l~~~~~ 318 (752)
...+..+|+|+. ++--+ ..+.+++..+.+.-....+... ...+....+.|||||..|+++.
T Consensus 388 --mP~~~~~P~~~~-~~aQs------------~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGd- 451 (503)
T KOG0282|consen 388 --MPCLTLHPNGKW-FAAQS------------MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGD- 451 (503)
T ss_pred --CcceecCCCCCe-ehhhc------------cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeec-
Confidence 346788999986 22221 3345666544211111122221 2334456788999999999876
Q ss_pred cccCceeEEEEcCCCC
Q 004456 319 YKTSQTRTWLVCPGSK 334 (752)
Q Consensus 319 ~~~~~~~l~~~~~~~~ 334 (752)
..+.++.+|-.+.
T Consensus 452 ---sdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 452 ---SDGKVNFWDWKTT 464 (503)
T ss_pred ---CCccEEEeechhh
Confidence 5567999998773
No 232
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.66 E-value=3.8e-07 Score=87.88 Aligned_cols=108 Identities=18% Similarity=0.243 Sum_probs=76.4
Q ss_pred CCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceecc-CCCCccccccccceEEecCCcEEEEEe
Q 004456 27 YPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF-ESPDICLNAVFGSFVWVNNSTLLIFTI 105 (752)
Q Consensus 27 ~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt-~~~~~~~~~~~~~~~wspdg~~l~~~~ 105 (752)
.|...-+...+|.+||..++-++ -+...|.|+++++|...+|. .+.+ ++..+.|||||.+|+.++
T Consensus 192 ~pgh~pVtsmqwn~dgt~l~tAS---------~gsssi~iWdpdtg~~~pL~~~glg-----g~slLkwSPdgd~lfaAt 257 (445)
T KOG2139|consen 192 DPGHNPVTSMQWNEDGTILVTAS---------FGSSSIMIWDPDTGQKIPLIPKGLG-----GFSLLKWSPDGDVLFAAT 257 (445)
T ss_pred CCCCceeeEEEEcCCCCEEeecc---------cCcceEEEEcCCCCCcccccccCCC-----ceeeEEEcCCCCEEEEec
Confidence 44444688999999999998764 44578999999999998886 2222 467889999999888763
Q ss_pred cCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCC---CccccCCccceecccc
Q 004456 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG---TAKDFGTPAVYTAVEP 182 (752)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G---~~~~l~~~~~~~~~~~ 182 (752)
.+ ....++..+. +.+.+...+.+....|
T Consensus 258 ~d-------------------------------------------------avfrlw~e~q~wt~erw~lgsgrvqtacW 288 (445)
T KOG2139|consen 258 CD-------------------------------------------------AVFRLWQENQSWTKERWILGSGRVQTACW 288 (445)
T ss_pred cc-------------------------------------------------ceeeeehhcccceecceeccCCceeeeee
Confidence 31 1122232321 2222333368889999
Q ss_pred CCCCceEEEEecccC
Q 004456 183 SPDQKYVLITSMHRP 197 (752)
Q Consensus 183 SpDGk~l~~~~~~~~ 197 (752)
||+|++|+|.....+
T Consensus 289 spcGsfLLf~~sgsp 303 (445)
T KOG2139|consen 289 SPCGSFLLFACSGSP 303 (445)
T ss_pred cCCCCEEEEEEcCCc
Confidence 999999999987764
No 233
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=2.5e-06 Score=87.21 Aligned_cols=224 Identities=15% Similarity=0.163 Sum_probs=138.5
Q ss_pred eeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccc
Q 004456 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (752)
Q Consensus 6 ~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~ 85 (752)
.++.+++.. ..+....|. ..+++...+||-+..-..++. .++.........||-+. ..+.-..+..-.....
T Consensus 147 ev~f~~~~~--f~~~~~kl~----~~~i~~f~lSpgp~~~~vAvy-vPe~kGaPa~vri~~~~-~~~~~~~~a~ksFFka 218 (566)
T KOG2315|consen 147 EVQFYDLGS--FKTIQHKLS----VSGITMLSLSPGPEPPFVAVY-VPEKKGAPASVRIYKYP-EEGQHQPVANKSFFKA 218 (566)
T ss_pred eEEEEecCC--ccceeeeee----ccceeeEEecCCCCCceEEEE-ccCCCCCCcEEEEeccc-cccccchhhhcccccc
Confidence 455555544 334444443 235888899998654332222 11122223334455544 2333333321111000
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccC
Q 004456 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (752)
Q Consensus 86 ~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~ 165 (752)
.--.+.|.+-|..|+.+.... .|...-.||++..||+++.+
T Consensus 219 --dkvqm~WN~~gt~LLvLastd-------------------------------------VDktn~SYYGEq~Lyll~t~ 259 (566)
T KOG2315|consen 219 --DKVQMKWNKLGTALLVLASTD-------------------------------------VDKTNASYYGEQTLYLLATQ 259 (566)
T ss_pred --ceeEEEeccCCceEEEEEEEe-------------------------------------ecCCCccccccceEEEEEec
Confidence 113679999999888764311 12223346778999999998
Q ss_pred CC--ccccCCccceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCcccc
Q 004456 166 GT--AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG 243 (752)
Q Consensus 166 G~--~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (752)
|+ ..+|...+.+.++.|||+|+..++.. +-.+.++-++|+++.-+..+...+.+
T Consensus 260 g~s~~V~L~k~GPVhdv~W~~s~~EF~Vvy-----------GfMPAkvtifnlr~~~v~df~egpRN------------- 315 (566)
T KOG2315|consen 260 GESVSVPLLKEGPVHDVTWSPSGREFAVVY-----------GFMPAKVTIFNLRGKPVFDFPEGPRN------------- 315 (566)
T ss_pred CceEEEecCCCCCceEEEECCCCCEEEEEE-----------ecccceEEEEcCCCCEeEeCCCCCcc-------------
Confidence 84 34556569999999999999988863 23357899999998876666655543
Q ss_pred ccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeeccc-ceeeeeeecCCceEEEee
Q 004456 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL-RFRSVSWCDDSLALVNET 317 (752)
Q Consensus 244 ~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~~~spDg~~l~~~~ 317 (752)
.+-|+|.|+. |+++.+.+ -++.+-+||+ . ..+.|..... ...-+.|||||.+++.++
T Consensus 316 --~~~fnp~g~i-i~lAGFGN---------L~G~mEvwDv---~--n~K~i~~~~a~~tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 316 --TAFFNPHGNI-ILLAGFGN---------LPGDMEVWDV---P--NRKLIAKFKAANTTVFEWSPDGEYFLTAT 373 (566)
T ss_pred --ceEECCCCCE-EEEeecCC---------CCCceEEEec---c--chhhccccccCCceEEEEcCCCcEEEEEe
Confidence 5899999997 77775442 4557888888 2 2455554443 345578999999998876
No 234
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=98.64 E-value=7.3e-06 Score=77.37 Aligned_cols=221 Identities=9% Similarity=0.041 Sum_probs=127.5
Q ss_pred cEEEEEccCCC---ccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCC
Q 004456 157 AQLVLGSLDGT---AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (752)
Q Consensus 157 ~~i~~~~~~G~---~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 232 (752)
.+|++|++.|+ ...+.-+ +.+..+.|++||+.|+-.+.++ .+..||..+++..+-......
T Consensus 69 r~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk-------------~v~~wD~~tG~~~rk~k~h~~-- 133 (338)
T KOG0265|consen 69 RAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDK-------------TVRGWDAETGKRIRKHKGHTS-- 133 (338)
T ss_pred ceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCc-------------eEEEEecccceeeehhccccc--
Confidence 58999999773 3344444 8889999999999998876664 799999998865443222211
Q ss_pred CCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCce
Q 004456 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLA 312 (752)
Q Consensus 233 ~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~ 312 (752)
+ +..+. |.-+......+ .+....+.++|+ ..++.-.+.........+.|..++..
T Consensus 134 ---~-------vNs~~--p~rrg~~lv~S----------gsdD~t~kl~D~---R~k~~~~t~~~kyqltAv~f~d~s~q 188 (338)
T KOG0265|consen 134 ---F-------VNSLD--PSRRGPQLVCS----------GSDDGTLKLWDI---RKKEAIKTFENKYQLTAVGFKDTSDQ 188 (338)
T ss_pred ---e-------eeecC--ccccCCeEEEe----------cCCCceEEEEee---cccchhhccccceeEEEEEecccccc
Confidence 0 11112 22222122222 123446788887 33344444555667788999999988
Q ss_pred EEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCC
Q 004456 313 LVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEG 392 (752)
Q Consensus 313 l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~ 392 (752)
+..+. -+++|-++|+..++ ...+..+..... --++-|++|.++.-.+.+.
T Consensus 189 v~sgg----Idn~ikvWd~r~~d--~~~~lsGh~DtI------t~lsls~~gs~llsnsMd~------------------ 238 (338)
T KOG0265|consen 189 VISGG----IDNDIKVWDLRKND--GLYTLSGHADTI------TGLSLSRYGSFLLSNSMDN------------------ 238 (338)
T ss_pred eeecc----ccCceeeeccccCc--ceEEeecccCce------eeEEeccCCCccccccccc------------------
Confidence 87765 33457777775431 122222222111 1144689999887776542
Q ss_pred CCCeeEEEecCC---C-ceeEEeeccchhhhhceeeeecCCcceecccCCCEEEEEEecCCCCcEEEEEECCC
Q 004456 393 NIPFLDLFDINT---G-SKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPL 461 (752)
Q Consensus 393 ~~~~l~~~d~~~---g-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~~ 461 (752)
.+.+||..- + +...++..... .+...--.++|||++..+-+...+ ..+|+||..+
T Consensus 239 ---tvrvwd~rp~~p~~R~v~if~g~~h-------nfeknlL~cswsp~~~~i~ags~d----r~vyvwd~~~ 297 (338)
T KOG0265|consen 239 ---TVRVWDVRPFAPSQRCVKIFQGHIH-------NFEKNLLKCSWSPNGTKITAGSAD----RFVYVWDTTS 297 (338)
T ss_pred ---eEEEEEecccCCCCceEEEeecchh-------hhhhhcceeeccCCCCcccccccc----ceEEEeeccc
Confidence 466777531 1 11233332211 111112247999999988665433 3488998554
No 235
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.64 E-value=4e-06 Score=89.98 Aligned_cols=206 Identities=10% Similarity=0.057 Sum_probs=116.5
Q ss_pred cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCC
Q 004456 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (752)
Q Consensus 175 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~ 254 (752)
+.+-++.||.++ +|+-.+.++ .+.+|++..++--.+.....- +.-++|.|--.
T Consensus 370 ~DILDlSWSKn~-fLLSSSMDK-------------TVRLWh~~~~~CL~~F~Hndf-------------VTcVaFnPvDD 422 (712)
T KOG0283|consen 370 ADILDLSWSKNN-FLLSSSMDK-------------TVRLWHPGRKECLKVFSHNDF-------------VTCVAFNPVDD 422 (712)
T ss_pred hhheecccccCC-eeEeccccc-------------cEEeecCCCcceeeEEecCCe-------------eEEEEecccCC
Confidence 889999999665 666666664 789999998876665555433 56789999665
Q ss_pred ceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCC
Q 004456 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (752)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 334 (752)
+ ||++.. -.+++.+|++ ...++..-++...-+..+.|+|||+..++++ -++..+.++..+.
T Consensus 423 r--yFiSGS----------LD~KvRiWsI---~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt----~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 423 R--YFISGS----------LDGKVRLWSI---SDKKVVDWNDLRDLITAVCYSPDGKGAVIGT----FNGYCRFYDTEGL 483 (712)
T ss_pred C--cEeecc----------cccceEEeec---CcCeeEeehhhhhhheeEEeccCCceEEEEE----eccEEEEEEccCC
Confidence 4 455421 3447888887 2222222335556688899999999999887 2334566665553
Q ss_pred Cccc-eeccccccccccCCCCCCceeeCC-CCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEee
Q 004456 335 DVAP-RVLFDRVFENVYSDPGSPMMTRTS-TGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 412 (752)
Q Consensus 335 ~~~~-~~l~~~~~~~~~~~~~~p~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~ 412 (752)
.-.. ..+...+....... ..--|.+.| +-..|++++.+. +|.++|..+..+...+.
T Consensus 484 k~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDS---------------------rIRI~d~~~~~lv~KfK 541 (712)
T KOG0283|consen 484 KLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDS---------------------RIRIYDGRDKDLVHKFK 541 (712)
T ss_pred eEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCC---------------------ceEEEeccchhhhhhhc
Confidence 1000 00100000000000 000011111 111455554332 58888875544432222
Q ss_pred ccchhhhhceeeeecCCcceecccCCCEEEEEEecCCCCcEEEEEECCC
Q 004456 413 SNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPL 461 (752)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~~ 461 (752)
+ ... ...+...+|+.||+.|++...+ ..+|+|+.+.
T Consensus 542 G--------~~n-~~SQ~~Asfs~Dgk~IVs~seD----s~VYiW~~~~ 577 (712)
T KOG0283|consen 542 G--------FRN-TSSQISASFSSDGKHIVSASED----SWVYIWKNDS 577 (712)
T ss_pred c--------ccc-CCcceeeeEccCCCEEEEeecC----ceEEEEeCCC
Confidence 2 111 1224457899999999998633 3599998654
No 236
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=98.64 E-value=7.7e-07 Score=81.09 Aligned_cols=125 Identities=21% Similarity=0.198 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC--------CceeEEEEccCCCCCCCCccCccccccchhh
Q 004456 584 SSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP--------HLFCCGIARSGSYNKTLTPFGFQTEFRTLWE 655 (752)
Q Consensus 584 ~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p--------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 655 (752)
+-+..+.+++++++..| ||+|+|+|+.++..++.... -.|+.+|+++|+.-....
T Consensus 90 esl~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~~~------------- 152 (230)
T KOG2551|consen 90 ESLEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPSKK------------- 152 (230)
T ss_pred HHHHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCcch-------------
Confidence 33555668888888777 89999999999999987321 147899999986432100
Q ss_pred hHHHHHhcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHH
Q 004456 656 ATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDR 735 (752)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~ 735 (752)
..-..+...+++|.|-+.|+.|.+|| ...+..+++.+... . ++.-.+||.+.. ...+.+.+.+
T Consensus 153 -------~~~~~~~~~i~~PSLHi~G~~D~iv~--~~~s~~L~~~~~~a----~-vl~HpggH~VP~---~~~~~~~i~~ 215 (230)
T KOG2551|consen 153 -------LDESAYKRPLSTPSLHIFGETDTIVP--SERSEQLAESFKDA----T-VLEHPGGHIVPN---KAKYKEKIAD 215 (230)
T ss_pred -------hhhhhhccCCCCCeeEEecccceeec--chHHHHHHHhcCCC----e-EEecCCCccCCC---chHHHHHHHH
Confidence 00112234578999999999999999 88888999888655 3 334456798643 3467777888
Q ss_pred HHHHHhc
Q 004456 736 WLQKYCL 742 (752)
Q Consensus 736 fl~~~l~ 742 (752)
||...+.
T Consensus 216 fi~~~~~ 222 (230)
T KOG2551|consen 216 FIQSFLQ 222 (230)
T ss_pred HHHHHHH
Confidence 8876653
No 237
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=98.62 E-value=1.2e-06 Score=80.08 Aligned_cols=100 Identities=19% Similarity=0.259 Sum_probs=66.8
Q ss_pred CcEEEEEeChHHHHHHHHH-HhCCCceeEEEEccCCCCCCCCccCccccccchhhhHHHHHhcChhhhcCCCCCCEEEEE
Q 004456 602 SRIAVGGHSYGAFMTAHLL-AHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIH 680 (752)
Q Consensus 602 ~~i~l~G~S~GG~~a~~~~-~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~ 680 (752)
+.++|+|||.|..++++++ .+...+++++++++|+.... ......... ...+.. ...+..|.+++.
T Consensus 55 ~~~ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~--~~~~~~~~~----------~f~~~p-~~~l~~~~~via 121 (171)
T PF06821_consen 55 EPTILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDD--PEPFPPELD----------GFTPLP-RDPLPFPSIVIA 121 (171)
T ss_dssp TTEEEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGC--HHCCTCGGC----------CCTTSH-CCHHHCCEEEEE
T ss_pred CCeEEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCccc--ccchhhhcc----------ccccCc-ccccCCCeEEEE
Confidence 4699999999999999999 66778999999999974310 000000000 000000 112246779999
Q ss_pred eCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 004456 681 GEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYA 721 (752)
Q Consensus 681 G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 721 (752)
+++|+.|| +..++++.+++. .+++.++++||...
T Consensus 122 S~nDp~vp--~~~a~~~A~~l~-----a~~~~~~~~GHf~~ 155 (171)
T PF06821_consen 122 SDNDPYVP--FERAQRLAQRLG-----AELIILGGGGHFNA 155 (171)
T ss_dssp ETTBSSS---HHHHHHHHHHHT------EEEEETS-TTSSG
T ss_pred cCCCCccC--HHHHHHHHHHcC-----CCeEECCCCCCccc
Confidence 99999999 999999998884 36999999999643
No 238
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.60 E-value=7e-06 Score=77.62 Aligned_cols=259 Identities=12% Similarity=0.083 Sum_probs=150.8
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEccc----CcceeccCCCCc----------cccccccceEEecC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET----GEAKPLFESPDI----------CLNAVFGSFVWVNN 97 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~----g~~~~lt~~~~~----------~~~~~~~~~~wspd 97 (752)
-++..+|||||..+|-. +....|-|++++- .+.+++..+... +.-..+..+.|.|-
T Consensus 114 ~cR~aafs~DG~lvATG----------saD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 114 PCRAAAFSPDGSLVATG----------SADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceeeeeeCCCCcEEEcc----------CCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 37889999999999884 4456788887761 122222211110 00113557788888
Q ss_pred CcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCC----Cc-cccC
Q 004456 98 STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG----TA-KDFG 172 (752)
Q Consensus 98 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G----~~-~~l~ 172 (752)
...|+-.+. ...|.++|... .. +.+.
T Consensus 184 e~ILiS~sr-------------------------------------------------D~tvKlFDfsK~saKrA~K~~q 214 (430)
T KOG0640|consen 184 ETILISGSR-------------------------------------------------DNTVKLFDFSKTSAKRAFKVFQ 214 (430)
T ss_pred hheEEeccC-------------------------------------------------CCeEEEEecccHHHHHHHHHhh
Confidence 876664422 14566677633 12 2233
Q ss_pred CccceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeC
Q 004456 173 TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRAD 252 (752)
Q Consensus 173 ~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspD 252 (752)
+...+..++|.|.|.+|++..... .+.+||+++-+.-.-.++... +..++..+..|+.
T Consensus 215 d~~~vrsiSfHPsGefllvgTdHp-------------~~rlYdv~T~QcfvsanPd~q---------ht~ai~~V~Ys~t 272 (430)
T KOG0640|consen 215 DTEPVRSISFHPSGEFLLVGTDHP-------------TLRLYDVNTYQCFVSANPDDQ---------HTGAITQVRYSST 272 (430)
T ss_pred ccceeeeEeecCCCceEEEecCCC-------------ceeEEeccceeEeeecCcccc---------cccceeEEEecCC
Confidence 337888999999999999976553 688999988765544432211 2234678999999
Q ss_pred CCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEe--ecccceeeeeeecCCceEEEeeecccCceeEEEEc
Q 004456 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVC 330 (752)
Q Consensus 253 G~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~--~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~ 330 (752)
|+ ||.+.. ..+.|-+||-- .+...+.+. -+...+.+..|+.+|++|+.+. ..+.++++.
T Consensus 273 ~~--lYvTaS-----------kDG~IklwDGV--S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG----~DS~vkLWE 333 (430)
T KOG0640|consen 273 GS--LYVTAS-----------KDGAIKLWDGV--SNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG----KDSTVKLWE 333 (430)
T ss_pred cc--EEEEec-----------cCCcEEeeccc--cHHHHHHHHhhcCCceeeeEEEccCCeEEeecC----Ccceeeeee
Confidence 98 788763 34467777531 222333332 2344578889999999998865 223456666
Q ss_pred CCCCCccceecccccccc-ccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeE
Q 004456 331 PGSKDVAPRVLFDRVFEN-VYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKER 409 (752)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~-~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~ 409 (752)
+.++ .......+.... ....... -.|.....|++|-.. ....+..||..++...+
T Consensus 334 i~t~--R~l~~YtGAg~tgrq~~rtq--AvFNhtEdyVl~pDE--------------------as~slcsWdaRtadr~~ 389 (430)
T KOG0640|consen 334 ISTG--RMLKEYTGAGTTGRQKHRTQ--AVFNHTEDYVLFPDE--------------------ASNSLCSWDARTADRVA 389 (430)
T ss_pred ecCC--ceEEEEecCCcccchhhhhh--hhhcCccceEEcccc--------------------ccCceeeccccchhhhh
Confidence 6664 222222111100 0000011 114555566665531 12358899988887777
Q ss_pred Eeecc
Q 004456 410 IWESN 414 (752)
Q Consensus 410 l~~~~ 414 (752)
|+...
T Consensus 390 l~slg 394 (430)
T KOG0640|consen 390 LLSLG 394 (430)
T ss_pred hcccC
Confidence 76544
No 239
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.60 E-value=8.3e-07 Score=82.72 Aligned_cols=61 Identities=16% Similarity=0.099 Sum_probs=41.3
Q ss_pred CCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHHHHhc
Q 004456 671 KIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 742 (752)
Q Consensus 671 ~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 742 (752)
.+.+|+.++.|++|..|. ..+...+.+. .+...+++.++| ||.+. .. ...+++++|.+.+.
T Consensus 174 pl~~pi~~~~G~~D~~vs--~~~~~~W~~~---t~~~f~l~~fdG-gHFfl-~~----~~~~v~~~i~~~l~ 234 (244)
T COG3208 174 PLACPIHAFGGEKDHEVS--RDELGAWREH---TKGDFTLRVFDG-GHFFL-NQ----QREEVLARLEQHLA 234 (244)
T ss_pred CcCcceEEeccCcchhcc--HHHHHHHHHh---hcCCceEEEecC-cceeh-hh----hHHHHHHHHHHHhh
Confidence 467999999999999986 5554444333 345689999976 69765 23 33455666666554
No 240
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=98.59 E-value=1e-07 Score=97.67 Aligned_cols=129 Identities=22% Similarity=0.151 Sum_probs=87.9
Q ss_pred EEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCC-cEEEecCCC-CCCCCCC
Q 004456 494 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR-FAVLAGPSI-PIIGEGD 571 (752)
Q Consensus 494 ~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-~~v~~~~~~-~~~g~g~ 571 (752)
=|..-+|.|. .+ ..++|+|||+|||++..++... . ..-...|+++| ++|+.++|+ +..|+=.
T Consensus 79 CL~LNIwaP~--~~--a~~~PVmV~IHGG~y~~Gs~s~----------~--~ydgs~La~~g~vVvVSvNYRLG~lGfL~ 142 (491)
T COG2272 79 CLYLNIWAPE--VP--AEKLPVMVYIHGGGYIMGSGSE----------P--LYDGSALAARGDVVVVSVNYRLGALGFLD 142 (491)
T ss_pred ceeEEeeccC--CC--CCCCcEEEEEeccccccCCCcc----------c--ccChHHHHhcCCEEEEEeCcccccceeee
Confidence 4777888888 12 2348999999999877553321 1 12256788888 888887775 3334311
Q ss_pred C--CC--CchhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEccCCCC
Q 004456 572 K--LP--NDRFVEQLVSSAEAAVEEVVRR---GVADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSYN 638 (752)
Q Consensus 572 ~--~~--~~~~~~~~~~d~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~~~~~--p~~~~~~v~~~~~~~ 638 (752)
- .. ........+.|++.+++|+++. -.-|+++|-|+|.|.||+.++.+++.- ...|+.+|+.+|...
T Consensus 143 ~~~~~~~~~~~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 143 LSSLDTEDAFASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAAS 218 (491)
T ss_pred hhhccccccccccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCCC
Confidence 1 00 0111123578999999999885 236899999999999999999888752 236888888887653
No 241
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.59 E-value=3e-06 Score=91.60 Aligned_cols=180 Identities=15% Similarity=0.172 Sum_probs=122.2
Q ss_pred eceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 004456 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (752)
Q Consensus 33 ~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~ 112 (752)
++..+++-||++||+. +....|-+++++.+.....+..... .+..+.++|.++.|+..+-
T Consensus 99 ~r~~~v~g~g~~iaag----------sdD~~vK~~~~~D~s~~~~lrgh~a----pVl~l~~~p~~~fLAvss~------ 158 (933)
T KOG1274|consen 99 IRDLAVSGSGKMIAAG----------SDDTAVKLLNLDDSSQEKVLRGHDA----PVLQLSYDPKGNFLAVSSC------ 158 (933)
T ss_pred ceEEEEecCCcEEEee----------cCceeEEEEeccccchheeecccCC----ceeeeeEcCCCCEEEEEec------
Confidence 7889999999999996 4456788888877655444444332 4778899999999998732
Q ss_pred CCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCc-cccCC------c---cceeccc
Q 004456 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGT------P---AVYTAVE 181 (752)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~-~~l~~------~---~~~~~~~ 181 (752)
.++|+.|++ +|.. ..++. . ..+..++
T Consensus 159 -------------------------------------------dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~a 195 (933)
T KOG1274|consen 159 -------------------------------------------DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLA 195 (933)
T ss_pred -------------------------------------------CceEEEEEcccchhhhhcccCCccccccccceeeeee
Confidence 168888898 7732 22221 1 2455899
Q ss_pred cCCCCceEEEEecccCccccccccCccccEEEEecCCceeEE-ecCCCCCCCCCcccCCccccccceeeeeCCCceEEEE
Q 004456 182 PSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (752)
Q Consensus 182 ~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~ 260 (752)
|+|||..+++...++ .+.+|+..+-+..- |...... ......+|||.|++ |+-.
T Consensus 196 W~Pk~g~la~~~~d~-------------~Vkvy~r~~we~~f~Lr~~~~s-----------s~~~~~~wsPnG~Y-iAAs 250 (933)
T KOG1274|consen 196 WHPKGGTLAVPPVDN-------------TVKVYSRKGWELQFKLRDKLSS-----------SKFSDLQWSPNGKY-IAAS 250 (933)
T ss_pred ecCCCCeEEeeccCC-------------eEEEEccCCceeheeecccccc-----------cceEEEEEcCCCcE-Eeee
Confidence 999988888876664 67888877664322 2211111 11446899999998 5544
Q ss_pred EeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeee
Q 004456 261 EAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETW 318 (752)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~ 318 (752)
. ..+.|.+||+ ++-+. ......+...+|-|+...|-+..+
T Consensus 251 ~------------~~g~I~vWnv---~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~ 290 (933)
T KOG1274|consen 251 T------------LDGQILVWNV---DTHER---HEFKRAVCCEAWKPNANAITLITA 290 (933)
T ss_pred c------------cCCcEEEEec---ccchh---ccccceeEEEecCCCCCeeEEEee
Confidence 3 5668999998 43211 334456778899999988888764
No 242
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=98.58 E-value=6.1e-06 Score=78.50 Aligned_cols=112 Identities=24% Similarity=0.216 Sum_probs=71.8
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCccccccchhhhHHHHHhcChhhhcC
Q 004456 591 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHAN 670 (752)
Q Consensus 591 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (752)
-|+.+...++.++.+|+|||+||.+++.++..+|+.|.+.++++|..- |.+.............
T Consensus 126 P~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlW---------------w~n~~~l~~~~~~~~~- 189 (264)
T COG2819 126 PFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLW---------------WHNEAILREIESLKLL- 189 (264)
T ss_pred HHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchhh---------------hCCHHHhccccccccC-
Confidence 444555668899999999999999999999999999999999998421 2222222222211111
Q ss_pred CCCCCEEEEEeCC--CC---CCC-CCHHHHHHHHHHHHh-CCCcEEEEEeCCCCcc
Q 004456 671 KIKKPILIIHGEV--DD---KVG-LFPMQAERFFDALKG-HGALSRLVLLPFEHHV 719 (752)
Q Consensus 671 ~~~~P~li~~G~~--D~---~v~-~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~H~ 719 (752)
. ..++++.-|.. |. ... -...++.+..+.+.. .+....+..+|+.+|.
T Consensus 190 ~-~~~i~l~iG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~f~~~~~~~H~ 244 (264)
T COG2819 190 K-TKRICLYIGSGELDSSRSIRMAENKQEAAELSSLLEKRTGARLVFQEEPLEHHG 244 (264)
T ss_pred C-CcceEEEecccccCcchhhhhhhHHHHHHHHHHHHhhccCCceEeccccccccc
Confidence 1 34555555544 32 111 002344555555666 7788899999988886
No 243
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=98.58 E-value=5.2e-07 Score=86.53 Aligned_cols=103 Identities=24% Similarity=0.205 Sum_probs=60.5
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC--------CCceeEEEEccCCCCCCCCccCccccccchhhhHHHH
Q 004456 589 AVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA--------PHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVY 660 (752)
Q Consensus 589 ~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~--------p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (752)
+.+++.+.+.+ .+|+|+|+||.+|..++... ...|+.+|++++.......
T Consensus 93 l~~~i~~~GPf----dGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~------------------ 150 (212)
T PF03959_consen 93 LRDYIEENGPF----DGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD------------------ 150 (212)
T ss_dssp HHHHHHHH-------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE-------------------
T ss_pred HHHHHHhcCCe----EEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh------------------
Confidence 33444555433 59999999999999988642 2358999999986431100
Q ss_pred HhcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 004456 661 IEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYA 721 (752)
Q Consensus 661 ~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 721 (752)
.........+++|+|-++|.+|.+++ ...++.+++.+... .+++..++ ||.+.
T Consensus 151 --~~~~~~~~~i~iPtlHv~G~~D~~~~--~~~s~~L~~~~~~~---~~v~~h~g-GH~vP 203 (212)
T PF03959_consen 151 --YQELYDEPKISIPTLHVIGENDPVVP--PERSEALAEMFDPD---ARVIEHDG-GHHVP 203 (212)
T ss_dssp --GTTTT--TT---EEEEEEETT-SSS---HHHHHHHHHHHHHH---EEEEEESS-SSS--
T ss_pred --hhhhhccccCCCCeEEEEeCCCCCcc--hHHHHHHHHhccCC---cEEEEECC-CCcCc
Confidence 00011234578999999999999998 88999999988764 46677754 68754
No 244
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.56 E-value=1.2e-05 Score=81.44 Aligned_cols=245 Identities=10% Similarity=0.057 Sum_probs=134.1
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCc-ceeccCCCCccccccccceEEecCCcEEEEEecCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~ 110 (752)
-+...+|||.|++|++.- ...|-+.....+. .+++ .. +.+..+.+||.+++|.--+.....
T Consensus 34 p~~~~~~SP~G~~l~~~~-----------~~~V~~~~g~~~~~l~~~---~~----~~V~~~~fSP~~kYL~tw~~~pi~ 95 (561)
T COG5354 34 PVAYVSESPLGTYLFSEH-----------AAGVECWGGPSKAKLVRF---RH----PDVKYLDFSPNEKYLVTWSREPII 95 (561)
T ss_pred chhheeecCcchheehhh-----------ccceEEccccchhheeee---ec----CCceecccCcccceeeeeccCCcc
Confidence 467789999999999842 2334333322222 2222 21 146788999999998765332110
Q ss_pred CCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCcccc----CCcc-ceeccccCC
Q 004456 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDF----GTPA-VYTAVEPSP 184 (752)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~~l----~~~~-~~~~~~~Sp 184 (752)
+ ++-..-.+....+++++|. +|....- .... .-.-+.||-
T Consensus 96 ~----------------------------------pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~ 141 (561)
T COG5354 96 E----------------------------------PEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI 141 (561)
T ss_pred C----------------------------------hhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeee
Confidence 0 0000000011247888988 5532211 1111 122678899
Q ss_pred CCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCce-EEEEEec
Q 004456 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPST-LYWVEAQ 263 (752)
Q Consensus 185 DGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~-l~~~~~~ 263 (752)
|.++++..... .++++++ +..... .+..... ..++.+++|||-|..- |++....
T Consensus 142 ~D~y~ARvv~~--------------sl~i~e~-t~n~~~---~p~~~lr-------~~gi~dFsisP~~n~~~la~~tPE 196 (561)
T COG5354 142 DDKYVARVVGS--------------SLYIHEI-TDNIEE---HPFKNLR-------PVGILDFSISPEGNHDELAYWTPE 196 (561)
T ss_pred cchhhhhhccC--------------eEEEEec-CCcccc---Cchhhcc-------ccceeeEEecCCCCCceEEEEccc
Confidence 99988887333 6888887 443322 1211111 2458899999975431 3333222
Q ss_pred cCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecc-----c--CceeEEEEcCCCCCc
Q 004456 264 DRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK-----T--SQTRTWLVCPGSKDV 336 (752)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~-----~--~~~~l~~~~~~~~~~ 336 (752)
-++ ....+.++.+ + .+.....-+-......++.|.+.|++|++..... + +++.||++++.....
T Consensus 197 k~~-------kpa~~~i~sI-p-~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i 267 (561)
T COG5354 197 KLN-------KPAMVRILSI-P-KNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI 267 (561)
T ss_pred cCC-------CCcEEEEEEc-c-CCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc
Confidence 111 2224555555 2 1222333333344456788999999999876322 1 346799998876422
Q ss_pred cceeccccccccccCCCCCCceeeCCCCCeEEEee
Q 004456 337 APRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (752)
Q Consensus 337 ~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~ 371 (752)
...........+ |+|+|+++.++..+
T Consensus 268 ~V~~~~~~pVhd---------f~W~p~S~~F~vi~ 293 (561)
T COG5354 268 PVEKDLKDPVHD---------FTWEPLSSRFAVIS 293 (561)
T ss_pred ceecccccccee---------eeecccCCceeEEe
Confidence 112233444554 88999999998886
No 245
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=98.55 E-value=1.4e-05 Score=76.23 Aligned_cols=129 Identities=13% Similarity=0.100 Sum_probs=79.1
Q ss_pred eEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEec
Q 004456 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (752)
Q Consensus 482 ~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~ 561 (752)
...+.+....|..+...-.+-..... ..+..+||-+||.|.. .++|. +....|.+.|++++.+
T Consensus 6 ~~~~k~~~~~~~~~~~~a~y~D~~~~--gs~~gTVv~~hGsPGS-----------H~DFk----Yi~~~l~~~~iR~I~i 68 (297)
T PF06342_consen 6 RKLVKFQAENGKIVTVQAVYEDSLPS--GSPLGTVVAFHGSPGS-----------HNDFK----YIRPPLDEAGIRFIGI 68 (297)
T ss_pred EEEEEcccccCceEEEEEEEEecCCC--CCCceeEEEecCCCCC-----------ccchh----hhhhHHHHcCeEEEEe
Confidence 34455666666654443333222111 1246799999997632 24443 4567888999999995
Q ss_pred CCCCCCCCCCCCCCc--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004456 562 PSIPIIGEGDKLPND--RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (752)
Q Consensus 562 ~~~~~~g~g~~~~~~--~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~ 636 (752)
++ +|.|....+. .+...... .-++.|.+.-.++ .++.++|||.|+--|+.++..+| ..+++++.|+
T Consensus 69 N~---PGf~~t~~~~~~~~~n~er~---~~~~~ll~~l~i~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~ 136 (297)
T PF06342_consen 69 NY---PGFGFTPGYPDQQYTNEERQ---NFVNALLDELGIK-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPP 136 (297)
T ss_pred CC---CCCCCCCCCcccccChHHHH---HHHHHHHHHcCCC-CceEEEEeccchHHHHHHHhcCc--cceEEEecCC
Confidence 54 4554443332 22222222 2333344444455 78999999999999999999985 4677877765
No 246
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.54 E-value=9.1e-07 Score=86.64 Aligned_cols=267 Identities=11% Similarity=0.066 Sum_probs=146.2
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCc-ceeccCCCCccccccccceEEecCCcEEEEEecCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~ 110 (752)
.+...+|.|+|+.|...+. + ++.-+++..+=. ...+-.+.. .|+.+.||++|.+++-... +
T Consensus 98 ~V~~v~WtPeGRRLltgs~--------S--GEFtLWNg~~fnFEtilQaHDs-----~Vr~m~ws~~g~wmiSgD~---g 159 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQ--------S--GEFTLWNGTSFNFETILQAHDS-----PVRTMKWSHNGTWMISGDK---G 159 (464)
T ss_pred ceeeEEEcCCCceeEeecc--------c--ccEEEecCceeeHHHHhhhhcc-----cceeEEEccCCCEEEEcCC---C
Confidence 4778999999999988653 3 344444432211 111211111 4788999999999985421 1
Q ss_pred CCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CC-CccccCCc-cceeccccCCCCc
Q 004456 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQK 187 (752)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G-~~~~l~~~-~~~~~~~~SpDGk 187 (752)
...+-+... .+....-.....+...+..-.+.|.+++.....+.|.++|. .. +.+.|..+ ..+.++.|.|.-.
T Consensus 160 G~iKyWqpn----mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg 235 (464)
T KOG0284|consen 160 GMIKYWQPN----MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG 235 (464)
T ss_pred ceEEecccc----hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccc
Confidence 111111100 00000000000011122222234455555556688999998 55 55666655 7888999999988
Q ss_pred eEEEEecccCccccccccCccccEEEEecCCceeE-EecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCC
Q 004456 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (752)
Q Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~ 266 (752)
.|+..+.++ -+.+||..++... .+..... .+-.+.|+|+|.+ |+-.+
T Consensus 236 LiasgskDn-------------lVKlWDprSg~cl~tlh~HKn-------------tVl~~~f~~n~N~-Llt~s----- 283 (464)
T KOG0284|consen 236 LIASGSKDN-------------LVKLWDPRSGSCLATLHGHKN-------------TVLAVKFNPNGNW-LLTGS----- 283 (464)
T ss_pred eeEEccCCc-------------eeEeecCCCcchhhhhhhccc-------------eEEEEEEcCCCCe-eEEcc-----
Confidence 877765553 5788998877422 1222211 2567899999976 54443
Q ss_pred CCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceecccccc
Q 004456 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVF 346 (752)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 346 (752)
....+-++|+. .=++..........+..+.|+|-...|+.+...+ +.-..|.+++.....+...-.+...
T Consensus 284 -------kD~~~kv~DiR--~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~D-gsvvh~~v~~~~p~~~i~~AHd~~i 353 (464)
T KOG0284|consen 284 -------KDQSCKVFDIR--TMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSD-GSVVHWVVGLEEPLGEIPPAHDGEI 353 (464)
T ss_pred -------CCceEEEEehh--HhHHHHHhhcchhhheeeccccccccceeeccCC-CceEEEeccccccccCCCcccccce
Confidence 22366777772 1123333334555688899999988888766444 3333455543322111111111112
Q ss_pred ccccCCCCCCceeeCCCCCeEEEee
Q 004456 347 ENVYSDPGSPMMTRTSTGTNVIAKI 371 (752)
Q Consensus 347 ~~~~~~~~~p~~~~s~dg~~l~~~~ 371 (752)
. +++|-|=|..|+-.+
T Consensus 354 w---------sl~~hPlGhil~tgs 369 (464)
T KOG0284|consen 354 W---------SLAYHPLGHILATGS 369 (464)
T ss_pred e---------eeeccccceeEeecC
Confidence 1 267889997776654
No 247
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.54 E-value=2.6e-05 Score=77.28 Aligned_cols=143 Identities=15% Similarity=0.170 Sum_probs=87.2
Q ss_pred cEEEEEccCC-CccccCCccceeccccC-CCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCC
Q 004456 157 AQLVLGSLDG-TAKDFGTPAVYTAVEPS-PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (752)
Q Consensus 157 ~~i~~~~~~G-~~~~l~~~~~~~~~~~S-pDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (752)
.+|+.+++++ +...+.... ..++.+. +|| .|++.... .+.++|..+++.+.+........
T Consensus 22 ~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g-~l~v~~~~--------------~~~~~d~~~g~~~~~~~~~~~~~-- 83 (246)
T PF08450_consen 22 GRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDG-RLYVADSG--------------GIAVVDPDTGKVTVLADLPDGGV-- 83 (246)
T ss_dssp TEEEEEETTTTEEEEEESSS-EEEEEEECTTS-EEEEEETT--------------CEEEEETTTTEEEEEEEEETTCS--
T ss_pred CEEEEEECCCCeEEEEecCC-CceEEEEccCC-EEEEEEcC--------------ceEEEecCCCcEEEEeeccCCCc--
Confidence 6899999955 433332223 5566666 665 44454333 35666888887777665531110
Q ss_pred cccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEE
Q 004456 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALV 314 (752)
Q Consensus 235 ~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~ 314 (752)
....+.+++++|||+ ||++.......... ..+.++.++. + ++...+...-.....++||||++.|+
T Consensus 84 -----~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~---~~g~v~~~~~---~-~~~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 84 -----PFNRPNDVAVDPDGN--LYVTDSGGGGASGI---DPGSVYRIDP---D-GKVTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp -----CTEEEEEEEE-TTS---EEEEEECCBCTTCG---GSEEEEEEET---T-SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred -----ccCCCceEEEcCCCC--EEEEecCCCccccc---cccceEEECC---C-CeEEEEecCcccccceEECCcchhee
Confidence 012255799999999 78876543222211 1167999987 4 45555555555567899999999888
Q ss_pred EeeecccCceeEEEEcCCCC
Q 004456 315 NETWYKTSQTRTWLVCPGSK 334 (752)
Q Consensus 315 ~~~~~~~~~~~l~~~~~~~~ 334 (752)
+.. +....||+++++..
T Consensus 150 v~d---s~~~~i~~~~~~~~ 166 (246)
T PF08450_consen 150 VAD---SFNGRIWRFDLDAD 166 (246)
T ss_dssp EEE---TTTTEEEEEEEETT
T ss_pred ecc---cccceeEEEecccc
Confidence 753 24456999998753
No 248
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.53 E-value=1.8e-06 Score=81.82 Aligned_cols=227 Identities=10% Similarity=0.021 Sum_probs=126.9
Q ss_pred cEEEEEcc-CCCccccC---------Cc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEec
Q 004456 157 AQLVLGSL-DGTAKDFG---------TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC 225 (752)
Q Consensus 157 ~~i~~~~~-~G~~~~l~---------~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 225 (752)
+-|-+|+. +|+.++=. .. ..+..+.||.|..-|+-.+.+ ++|.+|.+.+++-.+-.
T Consensus 235 GFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqD-------------GkIKvWri~tG~ClRrF 301 (508)
T KOG0275|consen 235 GFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQD-------------GKIKVWRIETGQCLRRF 301 (508)
T ss_pred ceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcC-------------CcEEEEEEecchHHHHh
Confidence 45667776 66443211 11 455678899999988877665 38999999888643332
Q ss_pred CCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCC-CCeEEeecccceeee
Q 004456 226 DLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE-KPEILHKLDLRFRSV 304 (752)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~l~~~~~~~~~~ 304 (752)
+. ++..|+..++||.|+.. ++..++. ..+.+..+ +++ ..+.+......+...
T Consensus 302 dr-----------AHtkGvt~l~FSrD~Sq-iLS~sfD------------~tvRiHGl---KSGK~LKEfrGHsSyvn~a 354 (508)
T KOG0275|consen 302 DR-----------AHTKGVTCLSFSRDNSQ-ILSASFD------------QTVRIHGL---KSGKCLKEFRGHSSYVNEA 354 (508)
T ss_pred hh-----------hhccCeeEEEEccCcch-hhccccc------------ceEEEecc---ccchhHHHhcCccccccce
Confidence 22 12244668899999987 5555321 13333333 333 333344444556778
Q ss_pred eeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCC-CCeEEEeeeecCCcceEEEE
Q 004456 305 SWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTST-GTNVIAKIKKENDEQIYILL 383 (752)
Q Consensus 305 ~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~d-g~~l~~~~~~~~~~~~~~~~ 383 (752)
.|++||.+++..+ ....+.+++.++. + .+.......... +-. .+..-|. -..+++..
T Consensus 355 ~ft~dG~~iisaS----sDgtvkvW~~Ktt--e--C~~Tfk~~~~d~-~vn-sv~~~PKnpeh~iVCN------------ 412 (508)
T KOG0275|consen 355 TFTDDGHHIISAS----SDGTVKVWHGKTT--E--CLSTFKPLGTDY-PVN-SVILLPKNPEHFIVCN------------ 412 (508)
T ss_pred EEcCCCCeEEEec----CCccEEEecCcch--h--hhhhccCCCCcc-cce-eEEEcCCCCceEEEEc------------
Confidence 8999999998877 3335777777763 2 221111110000 000 0000111 11233322
Q ss_pred ccCCCCCCCCCCeeEEEecCCCceeEEeeccchhhhhceeeeecCCcceecccCCCEEEEEEecCCCCcEEEEEECCCCC
Q 004456 384 NGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKK 463 (752)
Q Consensus 384 ~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~~g~ 463 (752)
..+.+|++++.+.-++.....+.+ + +..-.+.+||.|.|+++...+. .+|.+...+|+
T Consensus 413 ---------rsntv~imn~qGQvVrsfsSGkRE----g-----GdFi~~~lSpkGewiYcigED~----vlYCF~~~sG~ 470 (508)
T KOG0275|consen 413 ---------RSNTVYIMNMQGQVVRSFSSGKRE----G-----GDFINAILSPKGEWIYCIGEDG----VLYCFSVLSGK 470 (508)
T ss_pred ---------CCCeEEEEeccceEEeeeccCCcc----C-----CceEEEEecCCCcEEEEEccCc----EEEEEEeecCc
Confidence 123599999864444433333322 1 1122467899999999886543 48998888877
Q ss_pred eeEe
Q 004456 464 SSQI 467 (752)
Q Consensus 464 ~~~l 467 (752)
.++.
T Consensus 471 LE~t 474 (508)
T KOG0275|consen 471 LERT 474 (508)
T ss_pred eeee
Confidence 6653
No 249
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=98.53 E-value=4.3e-07 Score=90.74 Aligned_cols=109 Identities=9% Similarity=-0.060 Sum_probs=72.2
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHH-hCCcEEEecCCCCCCCCCCCCCCc--hhHHHHHHHHHHH
Q 004456 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIPIIGEGDKLPND--RFVEQLVSSAEAA 589 (752)
Q Consensus 513 ~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~~~~~~~g~g~~~~~~--~~~~~~~~d~~~~ 589 (752)
.|++|++||.... . ...+.......++ ..+|.|++++.. +.+...... .......+++.+.
T Consensus 36 ~p~vilIHG~~~~-----------~--~~~~~~~l~~~ll~~~~~nVi~vD~~---~~~~~~y~~a~~~~~~v~~~la~~ 99 (275)
T cd00707 36 RPTRFIIHGWTSS-----------G--EESWISDLRKAYLSRGDYNVIVVDWG---RGANPNYPQAVNNTRVVGAELAKF 99 (275)
T ss_pred CCcEEEEcCCCCC-----------C--CCcHHHHHHHHHHhcCCCEEEEEECc---cccccChHHHHHhHHHHHHHHHHH
Confidence 6899999994211 0 0111112333344 468999996543 322211111 1122334677788
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCC
Q 004456 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (752)
Q Consensus 590 ~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~ 637 (752)
+++|.+...++.++|.|+||||||++|..++.+.|++++.++.+.|..
T Consensus 100 l~~L~~~~g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~ 147 (275)
T cd00707 100 LDFLVDNTGLSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAG 147 (275)
T ss_pred HHHHHHhcCCChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCc
Confidence 888887655667899999999999999999999999999999998753
No 250
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=98.49 E-value=4.2e-07 Score=87.28 Aligned_cols=185 Identities=14% Similarity=0.090 Sum_probs=115.5
Q ss_pred CceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEE
Q 004456 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (752)
Q Consensus 480 ~~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (752)
-.-.+..+.+.||..+.+..+--......+ ..-+||++-|. .+|+..+-. ..=++.||.|+
T Consensus 212 ~NG~R~kiks~dgneiDtmF~d~r~n~~~n--gq~LvIC~EGN---------------AGFYEvG~m--~tP~~lgYsvL 272 (517)
T KOG1553|consen 212 KNGQRLKIKSSDGNEIDTMFLDGRPNQSGN--GQDLVICFEGN---------------AGFYEVGVM--NTPAQLGYSVL 272 (517)
T ss_pred CCCeEEEEeecCCcchhheeecCCCCCCCC--CceEEEEecCC---------------ccceEeeee--cChHHhCceee
Confidence 345677788888888888777543221111 15688888773 234332221 12267899999
Q ss_pred ecCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCC
Q 004456 560 AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK 639 (752)
Q Consensus 560 ~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~ 639 (752)
- ....|++++ .+..+.......+.++++|..+.-....+.|++.|+|.||+.+.++|..+|+ ++++|+-+.+-|.
T Consensus 273 G---wNhPGFagS-TG~P~p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDl 347 (517)
T KOG1553|consen 273 G---WNHPGFAGS-TGLPYPVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDL 347 (517)
T ss_pred c---cCCCCcccc-CCCCCcccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhh
Confidence 9 444455544 2222333444555677888887766677899999999999999999999986 7999987766553
Q ss_pred CC-CccCccccccc-hhhhHHHHHhcChhhhcCCCCCCEEEEEeCCCCCCC
Q 004456 640 TL-TPFGFQTEFRT-LWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVG 688 (752)
Q Consensus 640 ~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~ 688 (752)
.. .-+.++..... .-.....+...+-...+.+.+.|+++|--++|.++.
T Consensus 348 lpLAl~rMP~~~~giV~~aiRnh~NLnnaell~ry~GPi~lIRRt~dEIit 398 (517)
T KOG1553|consen 348 LPLALFRMPTFFSGIVEHAIRNHMNLNNAELLARYKGPIRLIRRTQDEIIT 398 (517)
T ss_pred hhHHhhhchHHHHHHHHHHHHHhcccchHHHHHhhcCchhHhhhhhHhhhh
Confidence 21 11222221111 111223344444455567788999999999988764
No 251
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=98.49 E-value=2.6e-07 Score=103.48 Aligned_cols=130 Identities=19% Similarity=0.149 Sum_probs=84.6
Q ss_pred EEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCC-CCCCCCCC
Q 004456 494 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI-PIIGEGDK 572 (752)
Q Consensus 494 ~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~-~~~g~g~~ 572 (752)
=|..-+|.|....... ++|++|++|||++..++... . ...-...++.++++|+.++|| +..|+-..
T Consensus 108 CL~LnI~~P~~~~~~~--~lPV~v~ihGG~f~~G~~~~------~-----~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~ 174 (535)
T PF00135_consen 108 CLYLNIYTPSNASSNS--KLPVMVWIHGGGFMFGSGSF------P-----PYDGASLAASKDVIVVTINYRLGAFGFLSL 174 (535)
T ss_dssp --EEEEEEETSSSSTT--SEEEEEEE--STTTSSCTTS------G-----GGHTHHHHHHHTSEEEEE----HHHHH-BS
T ss_pred HHHHhhhhcccccccc--ccceEEEeecccccCCCccc------c-----cccccccccCCCEEEEEecccccccccccc
Confidence 4788899998765432 59999999999876543310 0 112244567899999998875 22332111
Q ss_pred CCCch-hHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEccCC
Q 004456 573 LPNDR-FVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGS 636 (752)
Q Consensus 573 ~~~~~-~~~~~~~d~~~~~~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~~~~~--p~~~~~~v~~~~~ 636 (752)
..... .....+.|...|++|+++.- .-|+++|-|+|+|.||..+..++... ...|..+|+.+|.
T Consensus 175 ~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 175 GDLDAPSGNYGLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp SSTTSHBSTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred cccccCchhhhhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 11111 24566889999999999862 25899999999999999999888753 3589999999984
No 252
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.48 E-value=7.7e-06 Score=81.05 Aligned_cols=194 Identities=16% Similarity=0.131 Sum_probs=115.9
Q ss_pred eceeEec-CCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCcc-ccccccceEEecCCcEEEEEecCCCC
Q 004456 33 INFVSWS-PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC-LNAVFGSFVWVNNSTLLIFTIPSSRR 110 (752)
Q Consensus 33 ~~~~~~S-PDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~-~~~~~~~~~wspdg~~l~~~~~~~~~ 110 (752)
.....+. +||+.++-. ...+.+++.++++.+.+....... -......+...|||+ |+|+......
T Consensus 42 ~~G~~~~~~~g~l~v~~------------~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~ 108 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVAD------------SGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGG 108 (246)
T ss_dssp EEEEEEECTTSEEEEEE------------TTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBC
T ss_pred CceEEEEccCCEEEEEE------------cCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCc
Confidence 4455666 776554441 145566688888877765542111 111244789999999 7776432211
Q ss_pred CCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCCCccccCCc-cceeccccCCCCceE
Q 004456 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSPDQKYV 189 (752)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G~~~~l~~~-~~~~~~~~SpDGk~l 189 (752)
.. .. ..+.||+++.+|+.+.+... .....++|||||+.|
T Consensus 109 ~~--------------------------------~~--------~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 109 AS--------------------------------GI--------DPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp TT--------------------------------CG--------GSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEE
T ss_pred cc--------------------------------cc--------cccceEEECCCCeEEEEecCcccccceEECCcchhe
Confidence 10 00 01689999999876666655 667799999999999
Q ss_pred EEEecccCccccccccCccccEEEEecC--Cc---eeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEecc
Q 004456 190 LITSMHRPYSYKVPCARFSQKVQVWTTD--GK---LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (752)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~--~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~ 264 (752)
++..... ..|+.++++ +. ..+.+...+... ..+..+++..+|+ |+.+..
T Consensus 149 yv~ds~~------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~----------g~pDG~~vD~~G~--l~va~~-- 202 (246)
T PF08450_consen 149 YVADSFN------------GRIWRFDLDADGGELSNRRVFIDFPGGP----------GYPDGLAVDSDGN--LWVADW-- 202 (246)
T ss_dssp EEEETTT------------TEEEEEEEETTTCCEEEEEEEEE-SSSS----------CEEEEEEEBTTS---EEEEEE--
T ss_pred eeccccc------------ceeEEEeccccccceeeeeeEEEcCCCC----------cCCCcceEcCCCC--EEEEEc--
Confidence 9875553 478888875 33 122232222221 1144689999997 655532
Q ss_pred CCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeee-cCCceEEEee
Q 004456 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWC-DDSLALVNET 317 (752)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~s-pDg~~l~~~~ 317 (752)
..+.|++++. +|.....+.........++|. ||.+.|+.++
T Consensus 203 ---------~~~~I~~~~p---~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 203 ---------GGGRIVVFDP---DGKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ---------TTTEEEEEET---TSCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred ---------CCCEEEEECC---CccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 3458888887 554444455444577888894 7777777664
No 253
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=98.48 E-value=1.5e-06 Score=90.79 Aligned_cols=109 Identities=8% Similarity=-0.026 Sum_probs=73.1
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHh--CCcEEEecCCCCCCCCCCCCCC--chhHHHHHHHHHH
Q 004456 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA--RRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEA 588 (752)
Q Consensus 513 ~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~d~~~ 588 (752)
.|++|++||.... ..+..+.......|.. ..|.|++ .|..|.|.+... .........++.+
T Consensus 41 ~ptvIlIHG~~~s------------~~~~~w~~~l~~al~~~~~d~nVI~---VDw~g~g~s~y~~a~~~t~~vg~~la~ 105 (442)
T TIGR03230 41 TKTFIVIHGWTVT------------GMFESWVPKLVAALYEREPSANVIV---VDWLSRAQQHYPTSAAYTKLVGKDVAK 105 (442)
T ss_pred CCeEEEECCCCcC------------CcchhhHHHHHHHHHhccCCCEEEE---EECCCcCCCCCccccccHHHHHHHHHH
Confidence 5899999994210 0011111112333332 3699999 445565554322 1223444567778
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004456 589 AVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (752)
Q Consensus 589 ~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~ 636 (752)
.+++|.+...++.+++.|+||||||++|..++.+.|+++..++.+.|.
T Consensus 106 lI~~L~~~~gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPA 153 (442)
T TIGR03230 106 FVNWMQEEFNYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPA 153 (442)
T ss_pred HHHHHHHhhCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCC
Confidence 888887654467789999999999999999999999999999998875
No 254
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.47 E-value=7.1e-06 Score=82.53 Aligned_cols=237 Identities=13% Similarity=0.149 Sum_probs=147.8
Q ss_pred CceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEccc-CcceeccCCCCccccccccceEEecCC
Q 004456 20 PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-GEAKPLFESPDICLNAVFGSFVWVNNS 98 (752)
Q Consensus 20 ~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~-g~~~~lt~~~~~~~~~~~~~~~wspdg 98 (752)
.++++..+..|.-+-...+|..-+++.- .+..-|-|+|+.. |...++.+.+-..-...++.+..+|||
T Consensus 409 harq~~tL~HGEvVcAvtIS~~trhVyT-----------gGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdg 477 (705)
T KOG0639|consen 409 HARQINTLAHGEVVCAVTISNPTRHVYT-----------GGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDG 477 (705)
T ss_pred hHHhhhhhccCcEEEEEEecCCcceeEe-----------cCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCC
Confidence 3445554566666667788888888744 3445566666655 333344322211001146788999999
Q ss_pred cEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCCCc----cccCCc
Q 004456 99 TLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTA----KDFGTP 174 (752)
Q Consensus 99 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G~~----~~l~~~ 174 (752)
+.|+.... .+.|-+|||.-.. ..++..
T Consensus 478 rtLivGGe-------------------------------------------------astlsiWDLAapTprikaeltss 508 (705)
T KOG0639|consen 478 RTLIVGGE-------------------------------------------------ASTLSIWDLAAPTPRIKAELTSS 508 (705)
T ss_pred ceEEeccc-------------------------------------------------cceeeeeeccCCCcchhhhcCCc
Confidence 99987522 1577888884422 234443
Q ss_pred -cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCC
Q 004456 175 -AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (752)
Q Consensus 175 -~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG 253 (752)
.....++.|||.|.. |..... ++|.+||+.....++-. .+...|..-+..|+||
T Consensus 509 apaCyALa~spDakvc-Fsccsd------------GnI~vwDLhnq~~Vrqf------------qGhtDGascIdis~dG 563 (705)
T KOG0639|consen 509 APACYALAISPDAKVC-FSCCSD------------GNIAVWDLHNQTLVRQF------------QGHTDGASCIDISKDG 563 (705)
T ss_pred chhhhhhhcCCcccee-eeeccC------------CcEEEEEcccceeeecc------------cCCCCCceeEEecCCC
Confidence 567789999999765 444332 48999999877554422 2233556678999999
Q ss_pred CceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEe--ecccceeeeeeecCCceEEEeeecccCceeEEEEcC
Q 004456 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (752)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~--~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~ 331 (752)
.+ +|+.- ..+.+..||+. +.+++. +....+.++..+|.+.+|+..- .++.+++...
T Consensus 564 tk--lWTGG-----------lDntvRcWDlr-----egrqlqqhdF~SQIfSLg~cP~~dWlavGM----ens~vevlh~ 621 (705)
T KOG0639|consen 564 TK--LWTGG-----------LDNTVRCWDLR-----EGRQLQQHDFSSQIFSLGYCPTGDWLAVGM----ENSNVEVLHT 621 (705)
T ss_pred ce--eecCC-----------Cccceeehhhh-----hhhhhhhhhhhhhheecccCCCccceeeec----ccCcEEEEec
Confidence 96 34421 33467888883 334443 3445678888999999999976 3345888887
Q ss_pred CCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeee
Q 004456 332 GSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (752)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~ 372 (752)
.+. +.-+|.-+.. ..-++.|++-|++++-+..
T Consensus 622 skp--~kyqlhlheS-------cVLSlKFa~cGkwfvStGk 653 (705)
T KOG0639|consen 622 SKP--EKYQLHLHES-------CVLSLKFAYCGKWFVSTGK 653 (705)
T ss_pred CCc--cceeeccccc-------EEEEEEecccCceeeecCc
Confidence 763 3344433222 1112568999999877653
No 255
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.47 E-value=1.9e-06 Score=87.27 Aligned_cols=165 Identities=14% Similarity=0.240 Sum_probs=105.6
Q ss_pred eceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 004456 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (752)
Q Consensus 33 ~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~ 112 (752)
+...+|||||.-|+-+. .++.|-++...|--...|.+..+ .+...+|.|+++.++|..
T Consensus 107 ~~~gRW~~dGtgLlt~G----------EDG~iKiWSrsGMLRStl~Q~~~-----~v~c~~W~p~S~~vl~c~------- 164 (737)
T KOG1524|consen 107 ISSGRWSPDGAGLLTAG----------EDGVIKIWSRSGMLRSTVVQNEE-----SIRCARWAPNSNSIVFCQ------- 164 (737)
T ss_pred hhhcccCCCCceeeeec----------CCceEEEEeccchHHHHHhhcCc-----eeEEEEECCCCCceEEec-------
Confidence 56689999999998752 33566666644443333433333 467889999999999861
Q ss_pred CCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc--CCCccccCCc-cceeccccCCCCceE
Q 004456 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL--DGTAKDFGTP-AVYTAVEPSPDQKYV 189 (752)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~--~G~~~~l~~~-~~~~~~~~SpDGk~l 189 (752)
..+++.-++ +-+..+..-+ +-+-.+.|||....|
T Consensus 165 -------------------------------------------g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI 201 (737)
T KOG1524|consen 165 -------------------------------------------GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNII 201 (737)
T ss_pred -------------------------------------------CCeEEEeecccccceeEEeccCcEEEEeecCccccce
Confidence 257777777 3355555555 778899999999887
Q ss_pred EEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCc
Q 004456 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (752)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~ 269 (752)
+-...+ .+..+||..|.... +... ...| +.+++|.|| +..+++.-
T Consensus 202 ~sgGED-------------~kfKvWD~~G~~Lf---~S~~-~ey~---------ITSva~npd-~~~~v~S~-------- 246 (737)
T KOG1524|consen 202 ASGGED-------------FRFKIWDAQGANLF---TSAA-EEYA---------ITSVAFNPE-KDYLLWSY-------- 246 (737)
T ss_pred eecCCc-------------eeEEeecccCcccc---cCCh-hccc---------eeeeeeccc-cceeeeee--------
Confidence 654322 25678888776322 2111 1112 678999999 42122221
Q ss_pred cccCccceEEeccCCCCCCCCCeEEe-ecccceeeeeeecCCceEEEee
Q 004456 270 VEVSPRDIIYTQPAEPAEGEKPEILH-KLDLRFRSVSWCDDSLALVNET 317 (752)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~~~~l~-~~~~~~~~~~~spDg~~l~~~~ 317 (752)
+. .+ +. ...+.+..++||+||.+++++.
T Consensus 247 ------------nt-------~R-~~~p~~GSifnlsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 247 ------------NT-------AR-FSSPRVGSIFNLSWSADGTQATCGT 275 (737)
T ss_pred ------------ee-------ee-ecCCCccceEEEEEcCCCceeeccc
Confidence 11 01 21 2346678899999999999876
No 256
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=98.45 E-value=9.6e-06 Score=81.99 Aligned_cols=201 Identities=15% Similarity=0.120 Sum_probs=110.4
Q ss_pred EEEEEe-CCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCC
Q 004456 496 TATLYL-PPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP 574 (752)
Q Consensus 496 ~~~l~~-P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~ 574 (752)
..|++. |...++.. -|+||++||||+-..-.-.| ...+ .....+.. ..++++.+| .....+ ..
T Consensus 107 s~Wlvk~P~~~~pk~---DpVlIYlHGGGY~l~~~p~q-------i~~L--~~i~~~l~-~~SILvLDY-sLt~~~--~~ 170 (374)
T PF10340_consen 107 SYWLVKAPNRFKPKS---DPVLIYLHGGGYFLGTTPSQ-------IEFL--LNIYKLLP-EVSILVLDY-SLTSSD--EH 170 (374)
T ss_pred eEEEEeCCcccCCCC---CcEEEEEcCCeeEecCCHHH-------HHHH--HHHHHHcC-CCeEEEEec-cccccc--cC
Confidence 356776 65544433 59999999997542111100 0000 00112222 457777665 222200 01
Q ss_pred CchhHHHHHHHHHHHHHHHH-HcCCCCCCcEEEEEeChHHHHHHHHHHhC--C---CceeEEEEccCCCCCCCCc---cC
Q 004456 575 NDRFVEQLVSSAEAAVEEVV-RRGVADPSRIAVGGHSYGAFMTAHLLAHA--P---HLFCCGIARSGSYNKTLTP---FG 645 (752)
Q Consensus 575 ~~~~~~~~~~d~~~~~~~l~-~~~~~d~~~i~l~G~S~GG~~a~~~~~~~--p---~~~~~~v~~~~~~~~~~~~---~~ 645 (752)
+.. +...+.++.++.++|. +.+ .++|.|||-|+||.+++.++..- + ..-+.+|+++|+.+..... ..
T Consensus 171 ~~~-yPtQL~qlv~~Y~~Lv~~~G---~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~~~~~ 246 (374)
T PF10340_consen 171 GHK-YPTQLRQLVATYDYLVESEG---NKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDSQEGS 246 (374)
T ss_pred CCc-CchHHHHHHHHHHHHHhccC---CCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCCCCCc
Confidence 112 2334566888899998 444 37899999999999999987542 1 1358999999997754211 00
Q ss_pred cc--ccccc--hhhh----HHHHHhc---------ChhhhcC---------C--CCCCEEEEEeCCCCCCCCCHHHHHHH
Q 004456 646 FQ--TEFRT--LWEA----TNVYIEM---------SPITHAN---------K--IKKPILIIHGEVDDKVGLFPMQAERF 697 (752)
Q Consensus 646 ~~--~~~~~--~~~~----~~~~~~~---------~~~~~~~---------~--~~~P~li~~G~~D~~v~~~~~~~~~~ 697 (752)
.. +.... .+.. .+.|... .|+.... + -+.-++|+.|+++-+ ..+..++
T Consensus 247 ~~~~n~~~D~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~n~~~n~d~~~W~~I~~~~~vfVi~Ge~Evf----rddI~~~ 322 (374)
T PF10340_consen 247 SYHDNEKRDMLSYKGLSMFGDAYIGNNDPENDLNSLPFVNIEYNFDAEDWKDILKKYSVFVIYGEDEVF----RDDILEW 322 (374)
T ss_pred cccccccccccchhhHHHHHHhhccccccccccccCCccCcccCCChhHHHHhccCCcEEEEECCcccc----HHHHHHH
Confidence 00 00000 0000 0111110 1111000 0 135799999999866 6788889
Q ss_pred HHHHHhCCC-----cEEEEEeCCCCccC
Q 004456 698 FDALKGHGA-----LSRLVLLPFEHHVY 720 (752)
Q Consensus 698 ~~~l~~~~~-----~~~~~~~~~~~H~~ 720 (752)
.+.+...+. ..+..+-+++.|..
T Consensus 323 ~~~~~~~~~~~~~~~~nv~~~~~G~Hi~ 350 (374)
T PF10340_consen 323 AKKLNDVKPNKFSNSNNVYIDEGGIHIG 350 (374)
T ss_pred HHHHhhcCccccCCcceEEEecCCcccc
Confidence 998886543 35777888888964
No 257
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.43 E-value=2.7e-05 Score=84.45 Aligned_cols=186 Identities=8% Similarity=-0.030 Sum_probs=113.0
Q ss_pred ccEEEEecCCceeE-EecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCC
Q 004456 209 QKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAE 287 (752)
Q Consensus 209 ~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 287 (752)
+.+.+|.....+.. .|+... ..++..+++.+|+. ++..+ ....|-+++.. +
T Consensus 76 ~tv~~y~fps~~~~~iL~Rft-------------lp~r~~~v~g~g~~-iaags------------dD~~vK~~~~~--D 127 (933)
T KOG1274|consen 76 NTVLRYKFPSGEEDTILARFT-------------LPIRDLAVSGSGKM-IAAGS------------DDTAVKLLNLD--D 127 (933)
T ss_pred ceEEEeeCCCCCccceeeeee-------------ccceEEEEecCCcE-EEeec------------CceeEEEEecc--c
Confidence 36777777655433 222221 22778999999998 66654 22356666764 4
Q ss_pred CCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceecccccccc-ccCCCCCCceeeCCCCCe
Q 004456 288 GEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFEN-VYSDPGSPMMTRTSTGTN 366 (752)
Q Consensus 288 ~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~p~~~~s~dg~~ 366 (752)
++..+.+....+.+..+.+.|.++.|+.++ .++.+++++++++ .....++...... .....-.-.++|+|+|..
T Consensus 128 ~s~~~~lrgh~apVl~l~~~p~~~fLAvss----~dG~v~iw~~~~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~ 202 (933)
T KOG1274|consen 128 SSQEKVLRGHDAPVLQLSYDPKGNFLAVSS----CDGKVQIWDLQDG-ILSKTLTGVDKDNEFILSRICTRLAWHPKGGT 202 (933)
T ss_pred cchheeecccCCceeeeeEcCCCCEEEEEe----cCceEEEEEcccc-hhhhhcccCCccccccccceeeeeeecCCCCe
Confidence 466777888899999999999999999987 4556899998875 2223332211110 000001123569999777
Q ss_pred EEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeeccchhhhhceeeeecCCcceecccCCCEEEEEEe
Q 004456 367 VIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKE 446 (752)
Q Consensus 367 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~ 446 (752)
+++...+ . .|.+++..+.+..-....+.- ......+.|||.|++|+...
T Consensus 203 la~~~~d----~-----------------~Vkvy~r~~we~~f~Lr~~~~---------ss~~~~~~wsPnG~YiAAs~- 251 (933)
T KOG1274|consen 203 LAVPPVD----N-----------------TVKVYSRKGWELQFKLRDKLS---------SSKFSDLQWSPNGKYIAAST- 251 (933)
T ss_pred EEeeccC----C-----------------eEEEEccCCceeheeeccccc---------ccceEEEEEcCCCcEEeeec-
Confidence 7776533 2 355666665554322222211 11133578999999987653
Q ss_pred cCCCCcEEEEEECCC
Q 004456 447 SKTEITQYHILSWPL 461 (752)
Q Consensus 447 ~~~~~~~i~~~d~~~ 461 (752)
...+|.+||.++
T Consensus 252 ---~~g~I~vWnv~t 263 (933)
T KOG1274|consen 252 ---LDGQILVWNVDT 263 (933)
T ss_pred ---cCCcEEEEeccc
Confidence 345688888775
No 258
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=98.43 E-value=3.4e-06 Score=76.08 Aligned_cols=170 Identities=16% Similarity=0.114 Sum_probs=103.6
Q ss_pred cCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH
Q 004456 540 FSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHL 619 (752)
Q Consensus 540 ~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~ 619 (752)
|.......+..|+++|+.|+.++.. -| ++......+...|+.+++++..++-. .+++.|+|+|+|+-+...+
T Consensus 14 w~~~d~~~a~~l~~~G~~VvGvdsl---~Y---fw~~rtP~~~a~Dl~~~i~~y~~~w~--~~~vvLiGYSFGADvlP~~ 85 (192)
T PF06057_consen 14 WRDLDKQIAEALAKQGVPVVGVDSL---RY---FWSERTPEQTAADLARIIRHYRARWG--RKRVVLIGYSFGADVLPFI 85 (192)
T ss_pred chhhhHHHHHHHHHCCCeEEEechH---HH---HhhhCCHHHHHHHHHHHHHHHHHHhC--CceEEEEeecCCchhHHHH
Confidence 4444456788999999999995442 21 22334456788999999988877633 4799999999999999888
Q ss_pred HHhCCC----ceeEEEEccCCCCC--CCCccCccccccchhhhHHHHHhcChhhhcCCCC-CCEEEEEeCCCCCCCCCHH
Q 004456 620 LAHAPH----LFCCGIARSGSYNK--TLTPFGFQTEFRTLWEATNVYIEMSPITHANKIK-KPILIIHGEVDDKVGLFPM 692 (752)
Q Consensus 620 ~~~~p~----~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~P~li~~G~~D~~v~~~~~ 692 (752)
..+-|. +++.+++++|.... .....++....... ....+...+.++. .|++.|+|++|.-..|+
T Consensus 86 ~nrLp~~~r~~v~~v~Ll~p~~~~dFeihv~~wlg~~~~~-------~~~~~~pei~~l~~~~v~CiyG~~E~d~~cp-- 156 (192)
T PF06057_consen 86 YNRLPAALRARVAQVVLLSPSTTADFEIHVSGWLGMGGDD-------AAYPVIPEIAKLPPAPVQCIYGEDEDDSLCP-- 156 (192)
T ss_pred HhhCCHHHHhheeEEEEeccCCcceEEEEhhhhcCCCCCc-------ccCCchHHHHhCCCCeEEEEEcCCCCCCcCc--
Confidence 887764 57778888775321 11111111000000 0012223344444 59999999877654443
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHH
Q 004456 693 QAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 738 (752)
Q Consensus 693 ~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 738 (752)
.+.. ..++.+..||+ |.|. .+.....+.|++-++
T Consensus 157 -------~l~~--~~~~~i~lpGg-HHfd--~dy~~La~~Il~~l~ 190 (192)
T PF06057_consen 157 -------SLRQ--PGVEVIALPGG-HHFD--GDYDALAKRILDALK 190 (192)
T ss_pred -------cccC--CCcEEEEcCCC-cCCC--CCHHHHHHHHHHHHh
Confidence 1222 35688889875 5553 334445555555443
No 259
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.43 E-value=1.6e-06 Score=84.99 Aligned_cols=185 Identities=11% Similarity=0.135 Sum_probs=116.5
Q ss_pred cccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCC-
Q 004456 88 VFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG- 166 (752)
Q Consensus 88 ~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G- 166 (752)
.+..+.|.|+|+.|+..+.. +..-+|+..+
T Consensus 98 ~V~~v~WtPeGRRLltgs~S-------------------------------------------------GEFtLWNg~~f 128 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQS-------------------------------------------------GEFTLWNGTSF 128 (464)
T ss_pred ceeeEEEcCCCceeEeeccc-------------------------------------------------ccEEEecCcee
Confidence 46678999999999987432 3344444433
Q ss_pred CccccCCc--cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccc
Q 004456 167 TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGM 244 (752)
Q Consensus 167 ~~~~l~~~--~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 244 (752)
..+.+... ..+....||++|.+++-.... ..|..|+.+=..++.+.... ...+
T Consensus 129 nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~g-------------G~iKyWqpnmnnVk~~~ahh------------~eaI 183 (464)
T KOG0284|consen 129 NFETILQAHDSPVRTMKWSHNGTWMISGDKG-------------GMIKYWQPNMNNVKIIQAHH------------AEAI 183 (464)
T ss_pred eHHHHhhhhcccceeEEEccCCCEEEEcCCC-------------ceEEecccchhhhHHhhHhh------------hhhh
Confidence 33333333 678899999999998765433 36777877644333322221 1338
Q ss_pred cceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCce
Q 004456 245 RSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQT 324 (752)
Q Consensus 245 ~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 324 (752)
++++|||+-.+ |++.+ ..+.|.+||.. ...+.+.|......+.++.|.|.-..|+..+ .+ +
T Consensus 184 RdlafSpnDsk---F~t~S----------dDg~ikiWdf~--~~kee~vL~GHgwdVksvdWHP~kgLiasgs-kD---n 244 (464)
T KOG0284|consen 184 RDLAFSPNDSK---FLTCS----------DDGTIKIWDFR--MPKEERVLRGHGWDVKSVDWHPTKGLIASGS-KD---N 244 (464)
T ss_pred heeccCCCCce---eEEec----------CCCeEEEEecc--CCchhheeccCCCCcceeccCCccceeEEcc-CC---c
Confidence 89999996665 33322 45578888864 4456677887888899999999765455444 33 2
Q ss_pred eEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeee
Q 004456 325 RTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (752)
Q Consensus 325 ~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~ 373 (752)
-+-++|..++. ..-.+..+. . ..-.+.|+++|.+|+-.+.+
T Consensus 245 lVKlWDprSg~-cl~tlh~HK-n------tVl~~~f~~n~N~Llt~skD 285 (464)
T KOG0284|consen 245 LVKLWDPRSGS-CLATLHGHK-N------TVLAVKFNPNGNWLLTGSKD 285 (464)
T ss_pred eeEeecCCCcc-hhhhhhhcc-c------eEEEEEEcCCCCeeEEccCC
Confidence 68889988852 211121111 0 11125699999999888744
No 260
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=98.43 E-value=7.1e-06 Score=81.40 Aligned_cols=153 Identities=18% Similarity=0.079 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEE-EEEeChHHHHHHHHHHhCCCceeEEEEccCCCC-------------------C
Q 004456 580 EQLVSSAEAAVEEVVRRGVADPSRIA-VGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN-------------------K 639 (752)
Q Consensus 580 ~~~~~d~~~~~~~l~~~~~~d~~~i~-l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~-------------------~ 639 (752)
.-.++|.+++-+.|.+.-.| .++. |+|.||||+.|+..+..+|++++.+|.++.... +
T Consensus 126 ~~ti~D~V~aq~~ll~~LGI--~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s~~~ia~~~~~r~AI~~DP 203 (368)
T COG2021 126 VITIRDMVRAQRLLLDALGI--KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARLSAQNIAFNEVQRQAIEADP 203 (368)
T ss_pred cccHHHHHHHHHHHHHhcCc--ceEeeeeccChHHHHHHHHHHhChHHHhhhheecccccCCHHHHHHHHHHHHHHHhCC
Confidence 34577888877777766444 4555 999999999999999999999998888876421 0
Q ss_pred CC-----C----c-cC-----------------ccccccc-------h----hhhHHHH---------------------
Q 004456 640 TL-----T----P-FG-----------------FQTEFRT-------L----WEATNVY--------------------- 660 (752)
Q Consensus 640 ~~-----~----~-~~-----------------~~~~~~~-------~----~~~~~~~--------------------- 660 (752)
.. . + .+ +...... . ...-+.|
T Consensus 204 ~~n~G~Y~~~~~P~~GL~~AR~l~~ltYrS~~~~~~rF~r~~~~~~~~~~~~~f~vESYL~~qg~kf~~rfDaNsYL~lt 283 (368)
T COG2021 204 DWNGGDYYEGTQPERGLRLARMLAHLTYRSEEELDERFGRRLQADPLRGGGVRFAVESYLDYQGDKFVARFDANSYLYLT 283 (368)
T ss_pred CccCCCccCCCCcchhHHHHHHHHHHHccCHHHHHHHhcccccccccCCCchhHHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 00 0 0 00 0000000 0 0001111
Q ss_pred ---HhcCh-------hhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHH
Q 004456 661 ---IEMSP-------ITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVI 730 (752)
Q Consensus 661 ---~~~~~-------~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~ 730 (752)
...++ ...+++++.|+|++.-+.|.+.| +++.+++.++|+..+. -.++-...||.....+ ...+.
T Consensus 284 ~ald~~D~s~~~~~l~~al~~i~~~~lv~gi~sD~lfp--~~~~~~~~~~L~~~~~--~~~i~S~~GHDaFL~e-~~~~~ 358 (368)
T COG2021 284 RALDYHDVSRGRGDLTAALARIKAPVLVVGITSDWLFP--PELQRALAEALPAAGA--LREIDSPYGHDAFLVE-SEAVG 358 (368)
T ss_pred HHHHhcCCCCCcCcHHHHHhcCccCEEEEEecccccCC--HHHHHHHHHhccccCc--eEEecCCCCchhhhcc-hhhhh
Confidence 11111 12266789999999999999999 9999999999988865 2233445789754333 34456
Q ss_pred HHHHHHHHH
Q 004456 731 WETDRWLQK 739 (752)
Q Consensus 731 ~~~~~fl~~ 739 (752)
+.+..||+.
T Consensus 359 ~~i~~fL~~ 367 (368)
T COG2021 359 PLIRKFLAL 367 (368)
T ss_pred HHHHHHhhc
Confidence 777777753
No 261
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.41 E-value=0.00011 Score=72.93 Aligned_cols=226 Identities=12% Similarity=0.057 Sum_probs=110.9
Q ss_pred ceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCc
Q 004456 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (752)
Q Consensus 176 ~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~ 255 (752)
....+++|.|||++++..... ...+-++|+..++...-...++.-. - -|-|+.
T Consensus 96 ~~~~~~ls~dgk~~~V~N~TP-----------a~SVtVVDl~~~kvv~ei~~PGC~~-------------i---yP~~~~ 148 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQNFTP-----------ATSVTVVDLAAKKVVGEIDTPGCWL-------------I---YPSGNR 148 (342)
T ss_dssp -GGGEEE-TTSSEEEEEEESS-----------SEEEEEEETTTTEEEEEEEGTSEEE-------------E---EEEETT
T ss_pred cccceEEccCCcEEEEEccCC-----------CCeEEEEECCCCceeeeecCCCEEE-------------E---EecCCC
Confidence 344779999999999976553 1478899999988766555543311 0 111111
Q ss_pred eEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEee---cc--cceeeeeeecCCceEEEeeecccCceeEEEEc
Q 004456 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK---LD--LRFRSVSWCDDSLALVNETWYKTSQTRTWLVC 330 (752)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~---~~--~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~ 330 (752)
.++-++ ..+.+..+.++ .+|++.+..+. .+ .-...++++.++..++|.+ -++.+|.++
T Consensus 149 ~F~~lC------------~DGsl~~v~Ld-~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~S----y~G~v~~~d 211 (342)
T PF06433_consen 149 GFSMLC------------GDGSLLTVTLD-ADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVS----YEGNVYSAD 211 (342)
T ss_dssp EEEEEE------------TTSCEEEEEET-STSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEB----TTSEEEEEE
T ss_pred ceEEEe------------cCCceEEEEEC-CCCCEeEeeccccCCCCcccccccceECCCCeEEEEe----cCCEEEEEe
Confidence 122222 11122222321 13333222221 11 1123556777777788776 445699999
Q ss_pred CCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCC-CCCCCCCCeeEEEecCCCceeE
Q 004456 331 PGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRG-FTPEGNIPFLDLFDINTGSKER 409 (752)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~l~~~d~~~g~~~~ 409 (752)
+.+. .++.....+...... .. --|-|.|-.++..... .+.-|++.+..+ ++.+.....||++|+++++..+
T Consensus 212 lsg~--~~~~~~~~~~~t~~e--~~--~~WrPGG~Q~~A~~~~--~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~ 283 (342)
T PF06433_consen 212 LSGD--SAKFGKPWSLLTDAE--KA--DGWRPGGWQLIAYHAA--SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVA 283 (342)
T ss_dssp ETTS--SEEEEEEEESS-HHH--HH--TTEEE-SSS-EEEETT--TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEE
T ss_pred ccCC--cccccCcccccCccc--cc--cCcCCcceeeeeeccc--cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEE
Confidence 9874 333222111100000 00 0167777544333211 234444443222 2233445679999999987644
Q ss_pred EeeccchhhhhceeeeecCCcceecccCCCEEEEEEecCCCCcEEEEEECCCCCeeEe
Q 004456 410 IWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQI 467 (752)
Q Consensus 410 l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~~g~~~~l 467 (752)
-+..... ..+ +++|.|.+=++|..+. ....|+++|..+|+..+-
T Consensus 284 Ri~l~~~-----~~S-------i~Vsqd~~P~L~~~~~--~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 284 RIPLEHP-----IDS-------IAVSQDDKPLLYALSA--GDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp EEEEEEE-----ESE-------EEEESSSS-EEEEEET--TTTEEEEEETTT--EEEE
T ss_pred EEeCCCc-----cce-------EEEccCCCcEEEEEcC--CCCeEEEEeCcCCcEEee
Confidence 4433222 112 3678888878877644 235699999999876543
No 262
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.41 E-value=1.7e-05 Score=75.70 Aligned_cols=187 Identities=13% Similarity=0.157 Sum_probs=101.8
Q ss_pred cEEEEEcc-CCCccccCC---c----cceeccccCCCCceEEEEecccCccccccccCccccEEEEecC--CceeEEecC
Q 004456 157 AQLVLGSL-DGTAKDFGT---P----AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRELCD 226 (752)
Q Consensus 157 ~~i~~~~~-~G~~~~l~~---~----~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~--~~~~~~l~~ 226 (752)
.-|.+||. +|+.+.-.. + ....++.|||||.+|+-...+ .|.++|.. |......+.
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykr--------------cirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKR--------------CIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccc--------------eEEEeeccCCCCCCcchhh
Confidence 45778888 886543321 1 345589999999999765333 67777762 222222221
Q ss_pred CCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCe-EEeecccceeeee
Q 004456 227 LPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVS 305 (752)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~l~~~~~~~~~~~ 305 (752)
....+.. -..-+.-+++||--...+++.+-. -+--||..+ ++.+. .+....+.+..+.
T Consensus 199 ~~~~k~g------q~giisc~a~sP~~~~~~a~gsY~----------q~~giy~~~-----~~~pl~llggh~gGvThL~ 257 (406)
T KOG2919|consen 199 VTKGKFG------QKGIISCFAFSPMDSKTLAVGSYG----------QRVGIYNDD-----GRRPLQLLGGHGGGVTHLQ 257 (406)
T ss_pred hhccccc------ccceeeeeeccCCCCcceeeeccc----------ceeeeEecC-----CCCceeeecccCCCeeeEE
Confidence 1110000 001134589999665435555311 111344433 33444 4556677899999
Q ss_pred eecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEcc
Q 004456 306 WCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNG 385 (752)
Q Consensus 306 ~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 385 (752)
|.+||..|+..+... . .|..+|+... ..+..-..+...++. -.-.|.-.|+|++|+-...+
T Consensus 258 ~~edGn~lfsGaRk~-d--kIl~WDiR~~-~~pv~~L~rhv~~TN---QRI~FDld~~~~~LasG~td------------ 318 (406)
T KOG2919|consen 258 WCEDGNKLFSGARKD-D--KILCWDIRYS-RDPVYALERHVGDTN---QRILFDLDPKGEILASGDTD------------ 318 (406)
T ss_pred eccCcCeecccccCC-C--eEEEEeehhc-cchhhhhhhhccCcc---ceEEEecCCCCceeeccCCC------------
Confidence 999999998877433 2 4777776653 222111122222110 11123346788777665422
Q ss_pred CCCCCCCCCCeeEEEecCC-Cc
Q 004456 386 RGFTPEGNIPFLDLFDINT-GS 406 (752)
Q Consensus 386 ~g~~~~~~~~~l~~~d~~~-g~ 406 (752)
..|.+||+++ |.
T Consensus 319 ---------G~V~vwdlk~~gn 331 (406)
T KOG2919|consen 319 ---------GSVRVWDLKDLGN 331 (406)
T ss_pred ---------ccEEEEecCCCCC
Confidence 2588999887 55
No 263
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=98.37 E-value=2.3e-06 Score=87.70 Aligned_cols=78 Identities=23% Similarity=0.430 Sum_probs=61.6
Q ss_pred HHhcChhhhcCCCC-CCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccH--HHHHHHHHHH
Q 004456 660 YIEMSPITHANKIK-KPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENV--MHVIWETDRW 736 (752)
Q Consensus 660 ~~~~~~~~~~~~~~-~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~--~~~~~~~~~f 736 (752)
+...++...+.++. +|+|++||.+|..|| ..++..++.+.+.. +.+..++++++|........ .+....+.+|
T Consensus 218 ~~~~d~~~~~~~i~~~P~l~~~G~~D~~vp--~~~~~~~~~~~~~~--~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f 293 (299)
T COG1073 218 LLLLDPFDDAEKISPRPVLLVHGERDEVVP--LRDAEDLYEAARER--PKKLLFVPGGGHIDLYDNPPAVEQALDKLAEF 293 (299)
T ss_pred hccCcchhhHhhcCCcceEEEecCCCcccc--hhhhHHHHhhhccC--CceEEEecCCccccccCccHHHHHHHHHHHHH
Confidence 44556666666676 799999999999999 89999998887764 56788889999987643333 4788999999
Q ss_pred HHHHh
Q 004456 737 LQKYC 741 (752)
Q Consensus 737 l~~~l 741 (752)
|.+++
T Consensus 294 ~~~~l 298 (299)
T COG1073 294 LERHL 298 (299)
T ss_pred HHHhc
Confidence 99876
No 264
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.37 E-value=4.1e-05 Score=75.40 Aligned_cols=128 Identities=18% Similarity=0.150 Sum_probs=78.7
Q ss_pred eeEEeecCCCCCC-CCceeecCCCCCc-eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcc--------c----
Q 004456 6 GIGIHRLLPDDSL-GPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE--------T---- 71 (752)
Q Consensus 6 ~i~~~~~~~~~~~-g~~~~i~~~~~~~-~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~--------~---- 71 (752)
.||.++...++.+ .+..-+..+.... .++-.+|||+|..+|... +..+++++... +
T Consensus 39 riW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~----------D~g~v~lWk~~~~~~~~~d~e~~~ 108 (434)
T KOG1009|consen 39 RIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGG----------DGGEVFLWKQGDVRIFDADTEADL 108 (434)
T ss_pred eeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecC----------CCceEEEEEecCcCCccccchhhh
Confidence 4555544443222 2334444444433 678899999999999853 33444444322 2
Q ss_pred -Ccc---eeccCCCCccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhh
Q 004456 72 -GEA---KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYD 147 (752)
Q Consensus 72 -g~~---~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 147 (752)
.+. +...... ...+-.+.|+||+..+++.+.+
T Consensus 109 ~ke~w~v~k~lr~h----~~diydL~Ws~d~~~l~s~s~d---------------------------------------- 144 (434)
T KOG1009|consen 109 NKEKWVVKKVLRGH----RDDIYDLAWSPDSNFLVSGSVD---------------------------------------- 144 (434)
T ss_pred CccceEEEEEeccc----ccchhhhhccCCCceeeeeecc----------------------------------------
Confidence 110 1111110 1134578999999999987432
Q ss_pred hhhhhhhcccEEEEEcc-CCCc-cccCCc-cceeccccCCCCceEEEEeccc
Q 004456 148 ESLFDYYTTAQLVLGSL-DGTA-KDFGTP-AVYTAVEPSPDQKYVLITSMHR 196 (752)
Q Consensus 148 ~~~~~~~~~~~i~~~~~-~G~~-~~l~~~-~~~~~~~~SpDGk~l~~~~~~~ 196 (752)
..++.+|+ .|.. ..+.++ .....++|.|=+++|+..+.+.
T Consensus 145 ---------ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 145 ---------NSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred ---------ceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCc
Confidence 57888999 8844 445555 7788999999999999887664
No 265
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.37 E-value=1.3e-05 Score=80.73 Aligned_cols=218 Identities=11% Similarity=0.101 Sum_probs=144.0
Q ss_pred eeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCccee---ccCCCC
Q 004456 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP---LFESPD 82 (752)
Q Consensus 6 ~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~---lt~~~~ 82 (752)
.|.++++...+..-...+|.=+..+..++...++|||+.|... .....|-|+|++.-..+- ||...-
T Consensus 441 cVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivG----------GeastlsiWDLAapTprikaeltssap 510 (705)
T KOG0639|consen 441 CVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVG----------GEASTLSIWDLAAPTPRIKAELTSSAP 510 (705)
T ss_pred eEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEec----------cccceeeeeeccCCCcchhhhcCCcch
Confidence 3667888775334444455445456688999999999999873 335677888887655432 332221
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEE
Q 004456 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (752)
Q Consensus 83 ~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~ 162 (752)
.+ -.++.|||.+ |.|+.- ..+.|.+|
T Consensus 511 aC-----yALa~spDak-vcFscc------------------------------------------------sdGnI~vw 536 (705)
T KOG0639|consen 511 AC-----YALAISPDAK-VCFSCC------------------------------------------------SDGNIAVW 536 (705)
T ss_pred hh-----hhhhcCCccc-eeeeec------------------------------------------------cCCcEEEE
Confidence 11 2457899988 555421 11689999
Q ss_pred cc-CC-CccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCC
Q 004456 163 SL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (752)
Q Consensus 163 ~~-~G-~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (752)
|+ +. .++++..+ .+.+.+..|+||..|.-...+ +.+..||+..+. ++......
T Consensus 537 DLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlD-------------ntvRcWDlregr--qlqqhdF~--------- 592 (705)
T KOG0639|consen 537 DLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLD-------------NTVRCWDLREGR--QLQQHDFS--------- 592 (705)
T ss_pred EcccceeeecccCCCCCceeEEecCCCceeecCCCc-------------cceeehhhhhhh--hhhhhhhh---------
Confidence 99 66 56677666 889999999999999776544 478889987552 22222211
Q ss_pred ccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeec
Q 004456 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWY 319 (752)
Q Consensus 240 ~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~ 319 (752)
--++.+..+|.|.+ |++-= .+..+.++.. .+.+..+|...+.-+-++.|++-|++++....+
T Consensus 593 --SQIfSLg~cP~~dW-lavGM------------ens~vevlh~---skp~kyqlhlheScVLSlKFa~cGkwfvStGkD 654 (705)
T KOG0639|consen 593 --SQIFSLGYCPTGDW-LAVGM------------ENSNVEVLHT---SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKD 654 (705)
T ss_pred --hhheecccCCCccc-eeeec------------ccCcEEEEec---CCccceeecccccEEEEEEecccCceeeecCch
Confidence 11667788999998 54431 3335667666 556677788888888999999999999887522
Q ss_pred ccCceeEEEEcC
Q 004456 320 KTSQTRTWLVCP 331 (752)
Q Consensus 320 ~~~~~~l~~~~~ 331 (752)
+ .-..|+...
T Consensus 655 n--lLnawrtPy 664 (705)
T KOG0639|consen 655 N--LLNAWRTPY 664 (705)
T ss_pred h--hhhhccCcc
Confidence 2 123555554
No 266
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.36 E-value=0.00011 Score=68.70 Aligned_cols=150 Identities=15% Similarity=0.243 Sum_probs=94.4
Q ss_pred cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCC
Q 004456 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (752)
Q Consensus 175 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~ 254 (752)
..+.+++|||.|++|+..+.+. .+.+|....++...+..+++ ++..+..++||++|.
T Consensus 62 rsVRsvAwsp~g~~La~aSFD~-------------t~~Iw~k~~~efecv~~lEG----------HEnEVK~Vaws~sG~ 118 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRYLASASFDA-------------TVVIWKKEDGEFECVATLEG----------HENEVKCVAWSASGN 118 (312)
T ss_pred heeeeeeecCCCcEEEEeeccc-------------eEEEeecCCCceeEEeeeec----------cccceeEEEEcCCCC
Confidence 6788999999999999988774 67777766665555544432 233467899999999
Q ss_pred ceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCe---EEeecccceeeeeeecCCceEEEeeecccCceeEEEEcC
Q 004456 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE---ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (752)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~ 331 (752)
+ |+-++ ....++++-++ ++.+.. .|......+..+.|.|--. |+++..++ +..++|+-+.
T Consensus 119 ~-LATCS------------RDKSVWiWe~d--eddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~SYD-nTIk~~~~~~ 181 (312)
T KOG0645|consen 119 Y-LATCS------------RDKSVWIWEID--EDDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCSYD-NTIKVYRDED 181 (312)
T ss_pred E-EEEee------------CCCeEEEEEec--CCCcEEEEeeeccccccccEEEEcCCcc-eeEEeccC-CeEEEEeecC
Confidence 8 77664 23368888774 333433 3567777889999999765 44444455 3345555553
Q ss_pred CCCCccceeccccccccccCCCCCCceeeCCCCCeEEEee
Q 004456 332 GSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (752)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~ 371 (752)
+.+-+-.+..++....+.. +.|.+.|..|+..+
T Consensus 182 -dddW~c~~tl~g~~~TVW~------~~F~~~G~rl~s~s 214 (312)
T KOG0645|consen 182 -DDDWECVQTLDGHENTVWS------LAFDNIGSRLVSCS 214 (312)
T ss_pred -CCCeeEEEEecCccceEEE------EEecCCCceEEEec
Confidence 2211111111211112211 55788998888887
No 267
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=98.35 E-value=2e-05 Score=81.46 Aligned_cols=70 Identities=19% Similarity=0.217 Sum_probs=54.8
Q ss_pred cCCCC-CCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCC-CcEEEEEeCCCCcc--CCccccHHHHHHHHHHHHHHH
Q 004456 669 ANKIK-KPILIIHGEVDDKVGLFPMQAERFFDALKGHG-ALSRLVLLPFEHHV--YAARENVMHVIWETDRWLQKY 740 (752)
Q Consensus 669 ~~~~~-~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~H~--~~~~~~~~~~~~~~~~fl~~~ 740 (752)
+++|+ +|+|.+-|+.|.++| +.++..+.+.+...+ ...+....+++||. +.+.....+..+.+.+||.++
T Consensus 333 l~~I~~~pll~V~ge~D~I~p--~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~~ 406 (406)
T TIGR01849 333 PGAITRVALLTVEGENDDISG--LGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRRN 406 (406)
T ss_pred HHHCcccceEEEeccCCCcCC--HHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHhC
Confidence 45688 999999999999999 999998888764433 23457777789996 445556678889999999864
No 268
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=98.30 E-value=1e-05 Score=80.31 Aligned_cols=107 Identities=15% Similarity=0.150 Sum_probs=67.4
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHh---CCcEEEecCCCCCCCCCCCCCC-----chhHHHHHH
Q 004456 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA---RRFAVLAGPSIPIIGEGDKLPN-----DRFVEQLVS 584 (752)
Q Consensus 513 ~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~G~~v~~~~~~~~~g~g~~~~~-----~~~~~~~~~ 584 (752)
.++++++.|.|+ ...++..+...|.+ ..|.|++ .+..|+...... ....-.+.+
T Consensus 2 ~~li~~IPGNPG---------------lv~fY~~Fl~~L~~~l~~~~~i~~---ish~Gh~~~~~~~~~~~~~~~~sL~~ 63 (266)
T PF10230_consen 2 RPLIVFIPGNPG---------------LVEFYEEFLSALYEKLNPQFEILG---ISHAGHSTSPSNSKFSPNGRLFSLQD 63 (266)
T ss_pred cEEEEEECCCCC---------------hHHHHHHHHHHHHHhCCCCCeeEE---ecCCCCcCCcccccccCCCCccCHHH
Confidence 478999999652 22333345555553 5789988 444555333222 111223333
Q ss_pred HHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhCC---CceeEEEEccCCC
Q 004456 585 SAEAAVEEVVRR---GVADPSRIAVGGHSYGAFMTAHLLAHAP---HLFCCGIARSGSY 637 (752)
Q Consensus 585 d~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~~~~~p---~~~~~~v~~~~~~ 637 (752)
.+...++++.+. ......+++++|||.|++|++.++.+.+ ..++.++.+.|..
T Consensus 64 QI~hk~~~i~~~~~~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi 122 (266)
T PF10230_consen 64 QIEHKIDFIKELIPQKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTI 122 (266)
T ss_pred HHHHHHHHHHHHhhhhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcc
Confidence 444444444443 2113578999999999999999999998 6788888888864
No 269
>PRK04940 hypothetical protein; Provisional
Probab=98.29 E-value=4.2e-05 Score=69.03 Aligned_cols=116 Identities=10% Similarity=0.075 Sum_probs=71.9
Q ss_pred CcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc---cCccccccchhhhHHHHHhcChhhhcCCCCCCEEE
Q 004456 602 SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP---FGFQTEFRTLWEATNVYIEMSPITHANKIKKPILI 678 (752)
Q Consensus 602 ~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li 678 (752)
++++|+|.|+||+.|.+++.++ . + .+|++.|...+.... .+.+.+ ... -...-..+.. ....-..++
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~-g-~-~aVLiNPAv~P~~~L~~~ig~~~~-y~~-~~~~h~~eL~-----~~~p~r~~v 129 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLC-G-I-RQVIFNPNLFPEENMEGKIDRPEE-YAD-IATKCVTNFR-----EKNRDRCLV 129 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHH-C-C-CEEEECCCCChHHHHHHHhCCCcc-hhh-hhHHHHHHhh-----hcCcccEEE
Confidence 4699999999999999999998 3 3 445567765532110 111111 110 0111111111 111234699
Q ss_pred EEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHH
Q 004456 679 IHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 738 (752)
Q Consensus 679 ~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 738 (752)
+..+.|.+.+ +.++.+.++.. .+..+.+|++|.|.. .++..+.|.+|+.
T Consensus 130 llq~gDEvLD--yr~a~~~y~~~------y~~~v~~GGdH~f~~---fe~~l~~I~~F~~ 178 (180)
T PRK04940 130 ILSRNDEVLD--SQRTAEELHPY------YEIVWDEEQTHKFKN---ISPHLQRIKAFKT 178 (180)
T ss_pred EEeCCCcccC--HHHHHHHhccC------ceEEEECCCCCCCCC---HHHHHHHHHHHHh
Confidence 9999999988 77765555322 247889999998665 6678899999984
No 270
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.28 E-value=1.2e-05 Score=83.17 Aligned_cols=211 Identities=13% Similarity=0.109 Sum_probs=118.2
Q ss_pred CCceeceeEecC-CCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccc---cccceEEecC-CcEEEE
Q 004456 29 DGAKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNA---VFGSFVWVNN-STLLIF 103 (752)
Q Consensus 29 ~~~~~~~~~~SP-DG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~---~~~~~~wspd-g~~l~~ 103 (752)
.+..+....|.| |-++||..+. ++.-+||.+.+.|...-..| ++..+.. -+..+.|.|= ...|+.
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~d--------dg~i~lWr~~a~gl~e~~~t--Pe~~lt~h~eKI~slRfHPLAadvLa~ 695 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATD--------DGQINLWRLTANGLPENEMT--PEKILTIHGEKITSLRFHPLAADVLAV 695 (1012)
T ss_pred cCceeeecccCCCChHHeeeccc--------CceEEEEEeccCCCCcccCC--cceeeecccceEEEEEecchhhhHhhh
Confidence 455688889988 6678888653 55567777776655433332 2111100 1335566653 222222
Q ss_pred EecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CC-CccccCCc-cceecc
Q 004456 104 TIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAV 180 (752)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G-~~~~l~~~-~~~~~~ 180 (752)
++ ....|.+||+ ++ ...++..+ +.+.++
T Consensus 696 as-------------------------------------------------yd~Ti~lWDl~~~~~~~~l~gHtdqIf~~ 726 (1012)
T KOG1445|consen 696 AS-------------------------------------------------YDSTIELWDLANAKLYSRLVGHTDQIFGI 726 (1012)
T ss_pred hh-------------------------------------------------ccceeeeeehhhhhhhheeccCcCceeEE
Confidence 21 1268999999 77 55566666 899999
Q ss_pred ccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEE
Q 004456 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (752)
Q Consensus 181 ~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~ 260 (752)
+|||||++|+-...+. .+.+|+..+++. .+.+..+-.+ ...-.+.|.-||+. ++.+
T Consensus 727 AWSpdGr~~AtVcKDg-------------~~rVy~Prs~e~-pv~Eg~gpvg---------tRgARi~wacdgr~-viv~ 782 (1012)
T KOG1445|consen 727 AWSPDGRRIATVCKDG-------------TLRVYEPRSREQ-PVYEGKGPVG---------TRGARILWACDGRI-VIVV 782 (1012)
T ss_pred EECCCCcceeeeecCc-------------eEEEeCCCCCCC-ccccCCCCcc---------CcceeEEEEecCcE-EEEe
Confidence 9999999999987764 789998876532 2222211100 11224899999997 6666
Q ss_pred EeccCCCCccccCccceEEeccCCCCCCCCCeE-EeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCC
Q 004456 261 EAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (752)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 333 (752)
.+.. ...-++..+++...+.+.... ..+.....--+.+.+|...|+.+.. +...++.+.+..
T Consensus 783 Gfdk--------~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGK---GD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 783 GFDK--------SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGK---GDRFVNMYEVIY 845 (1012)
T ss_pred cccc--------cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecC---CCceEEEEEecC
Confidence 4331 122245556653222222111 1122223333557788776655432 223466666544
No 271
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.28 E-value=0.00058 Score=72.66 Aligned_cols=193 Identities=15% Similarity=0.132 Sum_probs=126.6
Q ss_pred eEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCCCCCC
Q 004456 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKK 115 (752)
Q Consensus 36 ~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~ 115 (752)
.+||++|+.|+..+ +..|-++++++++.. ++.....+ ...+..+..+||++.|+.+..
T Consensus 25 ~~~s~nG~~L~t~~-----------~d~Vi~idv~t~~~~-l~s~~~ed-~d~ita~~l~~d~~~L~~a~r--------- 82 (775)
T KOG0319|consen 25 VAWSSNGQHLYTAC-----------GDRVIIIDVATGSIA-LPSGSNED-EDEITALALTPDEEVLVTASR--------- 82 (775)
T ss_pred eeECCCCCEEEEec-----------CceEEEEEccCCcee-cccCCccc-hhhhheeeecCCccEEEEeec---------
Confidence 89999999998854 467889999998874 33332222 113568899999998887632
Q ss_pred ccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCcccc--CCc-cceeccccCCCCceEEE
Q 004456 116 TMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDF--GTP-AVYTAVEPSPDQKYVLI 191 (752)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~~l--~~~-~~~~~~~~SpDGk~l~~ 191 (752)
...+..+++ .|+..+. ..+ +.+...+|+|-|..|+.
T Consensus 83 ----------------------------------------s~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAt 122 (775)
T KOG0319|consen 83 ----------------------------------------SQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLAT 122 (775)
T ss_pred ----------------------------------------cceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEe
Confidence 145667777 6654333 223 77788999999955544
Q ss_pred EecccCccccccccCccccEEEEecCCceeEEecCC-CCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCcc
Q 004456 192 TSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDL-PPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANV 270 (752)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~ 270 (752)
...+ +.+.+||...+....-... ++- +..+.|.|+-.+-+++..
T Consensus 123 ggaD-------------~~v~VWdi~~~~~th~fkG~gGv-------------Vssl~F~~~~~~~lL~sg--------- 167 (775)
T KOG0319|consen 123 GGAD-------------GRVKVWDIKNGYCTHSFKGHGGV-------------VSSLLFHPHWNRWLLASG--------- 167 (775)
T ss_pred cccc-------------ceEEEEEeeCCEEEEEecCCCce-------------EEEEEeCCccchhheeec---------
Confidence 4333 4789999998876543332 322 567788888766233332
Q ss_pred ccCccceEEeccCCCCCCCC-CeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCC
Q 004456 271 EVSPRDIIYTQPAEPAEGEK-PEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (752)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 333 (752)
...+.+.+||..+ ... ...+......+.++++++|+..+++... ..-++++|+..
T Consensus 168 --~~D~~v~vwnl~~--~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~ 223 (775)
T KOG0319|consen 168 --ATDGTVRVWNLND--KRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQ 223 (775)
T ss_pred --CCCceEEEEEccc--CchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhh
Confidence 1344788888731 111 2334455667889999999999988773 33577777754
No 272
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.25 E-value=3.7e-05 Score=76.84 Aligned_cols=71 Identities=17% Similarity=0.213 Sum_probs=46.6
Q ss_pred cEEEecCCCCCCCCCCCCCCc-hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEcc
Q 004456 556 FAVLAGPSIPIIGEGDKLPND-RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARS 634 (752)
Q Consensus 556 ~~v~~~~~~~~~g~g~~~~~~-~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~ 634 (752)
|.+++ .+.+|+|.+. .. ........++...++ ..+ ..++.++||||||.+++.++.++|+.++++|+.+
T Consensus 51 ~~~~~---~d~~g~g~s~-~~~~~~~~~~~~~~~~~~---~~~---~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~ 120 (282)
T COG0596 51 YRVIA---PDLRGHGRSD-PAGYSLSAYADDLAALLD---ALG---LEKVVLVGHSMGGAVALALALRHPDRVRGLVLIG 120 (282)
T ss_pred eEEEE---ecccCCCCCC-cccccHHHHHHHHHHHHH---HhC---CCceEEEEecccHHHHHHHHHhcchhhheeeEec
Confidence 89998 4455766664 11 011111222222222 222 2449999999999999999999999999999888
Q ss_pred CC
Q 004456 635 GS 636 (752)
Q Consensus 635 ~~ 636 (752)
+.
T Consensus 121 ~~ 122 (282)
T COG0596 121 PA 122 (282)
T ss_pred CC
Confidence 54
No 273
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.24 E-value=1.7e-05 Score=78.14 Aligned_cols=244 Identities=11% Similarity=0.096 Sum_probs=139.5
Q ss_pred eeEEeecCCCCCCCCceeecCCCC-CceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcce-eccCCCCc
Q 004456 6 GIGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDI 83 (752)
Q Consensus 6 ~i~~~~~~~~~~~g~~~~i~~~~~-~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~-~lt~~~~~ 83 (752)
.|.++++.+ ++...+..+.. ...+....+-+|++++.-. ++..++.+++++.++.+ .|+-+.+
T Consensus 198 ~Ik~W~v~~----~k~~~~~tLaGs~g~it~~d~d~~~~~~iAa----------s~d~~~r~Wnvd~~r~~~TLsGHtd- 262 (459)
T KOG0288|consen 198 IIKLWNVLG----EKSELISTLAGSLGNITSIDFDSDNKHVIAA----------SNDKNLRLWNVDSLRLRHTLSGHTD- 262 (459)
T ss_pred hhhhhhccc----chhhhhhhhhccCCCcceeeecCCCceEEee----------cCCCceeeeeccchhhhhhhccccc-
Confidence 355667766 55444443332 3368889999999998775 44467777777776644 4443322
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEc
Q 004456 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (752)
Q Consensus 84 ~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~ 163 (752)
-+....+.-....++-.+ ...+|..||
T Consensus 263 ----kVt~ak~~~~~~~vVsgs-------------------------------------------------~DRtiK~WD 289 (459)
T KOG0288|consen 263 ----KVTAAKFKLSHSRVVSGS-------------------------------------------------ADRTIKLWD 289 (459)
T ss_pred ----ceeeehhhccccceeecc-------------------------------------------------ccchhhhhh
Confidence 244445554444333211 114566677
Q ss_pred c-CCC-ccccCCccceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCcc
Q 004456 164 L-DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (752)
Q Consensus 164 ~-~G~-~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (752)
+ ++. .+.+........+..+ -..+.+... ..+|..||..+...+.--...+.
T Consensus 290 l~k~~C~kt~l~~S~cnDI~~~----~~~~~SgH~-----------DkkvRfwD~Rs~~~~~sv~~gg~----------- 343 (459)
T KOG0288|consen 290 LQKAYCSKTVLPGSQCNDIVCS----ISDVISGHF-----------DKKVRFWDIRSADKTRSVPLGGR----------- 343 (459)
T ss_pred hhhhheeccccccccccceEec----ceeeeeccc-----------ccceEEEeccCCceeeEeecCcc-----------
Confidence 7 442 2222222333344443 222333332 25789999887765554333332
Q ss_pred ccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeeccc-----ceeeeeeecCCceEEEe
Q 004456 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL-----RFRSVSWCDDSLALVNE 316 (752)
Q Consensus 242 ~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~spDg~~l~~~ 316 (752)
+..+..++||.. |.... ..+.+-++|+ .+.+.+......+ ......||||+.+++.+
T Consensus 344 --vtSl~ls~~g~~-lLsss------------RDdtl~viDl---Rt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAG 405 (459)
T KOG0288|consen 344 --VTSLDLSMDGLE-LLSSS------------RDDTLKVIDL---RTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAG 405 (459)
T ss_pred --eeeEeeccCCeE-Eeeec------------CCCceeeeec---ccccEEEEeeccccccccccceeEECCCCceeeec
Confidence 557899999998 43333 3346777777 4555555443322 24567899999999987
Q ss_pred eecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEee
Q 004456 317 TWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (752)
Q Consensus 317 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~ 371 (752)
+ .++.||++++.++..+ ..+. .+... ++...++|+|.|++|+-..
T Consensus 406 S----~dgsv~iW~v~tgKlE-~~l~-~s~s~----~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 406 S----ADGSVYIWSVFTGKLE-KVLS-LSTSN----AAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred c----CCCcEEEEEccCceEE-EEec-cCCCC----cceEEEEEcCCCchhhccc
Confidence 7 4456999999885322 2221 11111 1334478999999987765
No 274
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.21 E-value=7.5e-05 Score=71.40 Aligned_cols=205 Identities=12% Similarity=0.106 Sum_probs=109.5
Q ss_pred CCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEe
Q 004456 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (752)
Q Consensus 183 SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~ 262 (752)
-|+-..++.++.+. -|.+||.-+++.+.-......... -.....+.|||||.. |+--
T Consensus 120 qP~t~l~a~ssr~~-------------PIh~wdaftG~lraSy~~ydh~de-------~taAhsL~Fs~DGeq-lfaG-- 176 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQ-------------PIHLWDAFTGKLRASYRAYDHQDE-------YTAAHSLQFSPDGEQ-LFAG-- 176 (406)
T ss_pred CCccceeeeccccC-------------ceeeeeccccccccchhhhhhHHh-------hhhheeEEecCCCCe-Eeec--
Confidence 47777777776664 589999988766653332211110 122567999999997 4333
Q ss_pred ccCCCCccccCccceEEeccCCCCCCCCCeE---Eeec----ccceeeeeeecCC-ceEEEeeecccCceeEEEEcCCCC
Q 004456 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEI---LHKL----DLRFRSVSWCDDS-LALVNETWYKTSQTRTWLVCPGSK 334 (752)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---l~~~----~~~~~~~~~spDg-~~l~~~~~~~~~~~~l~~~~~~~~ 334 (752)
.+.-|.++|+ ...|..-.. ++.+ .+-+..+++||-. +.+++.+ +. +.-.||..+ +
T Consensus 177 -----------ykrcirvFdt-~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gs-Y~-q~~giy~~~--~- 239 (406)
T KOG2919|consen 177 -----------YKRCIRVFDT-SRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGS-YG-QRVGIYNDD--G- 239 (406)
T ss_pred -----------ccceEEEeec-cCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeec-cc-ceeeeEecC--C-
Confidence 3335666666 112322222 2221 2335678899864 5666665 33 223455554 2
Q ss_pred CccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeecc
Q 004456 335 DVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESN 414 (752)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~ 414 (752)
..+..+.-+..+ +.--++|.+||.+|+..+.. -..|..||+.- ....|+.-.
T Consensus 240 -~~pl~llggh~g------GvThL~~~edGn~lfsGaRk--------------------~dkIl~WDiR~-~~~pv~~L~ 291 (406)
T KOG2919|consen 240 -RRPLQLLGGHGG------GVTHLQWCEDGNKLFSGARK--------------------DDKILCWDIRY-SRDPVYALE 291 (406)
T ss_pred -CCceeeecccCC------CeeeEEeccCcCeecccccC--------------------CCeEEEEeehh-ccchhhhhh
Confidence 223333222221 33347899999988777633 22588888742 112222211
Q ss_pred chhhhhceeeeecCCcceecccCCCEEEEEEecCCCCcEEEEEECCC-CCee
Q 004456 415 REKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPL-KKSS 465 (752)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~~-g~~~ 465 (752)
.. ..-+++-..+.+.|+|+.|+- ......|.+||+.+ |.+.
T Consensus 292 rh------v~~TNQRI~FDld~~~~~Las----G~tdG~V~vwdlk~~gn~~ 333 (406)
T KOG2919|consen 292 RH------VGDTNQRILFDLDPKGEILAS----GDTDGSVRVWDLKDLGNEV 333 (406)
T ss_pred hh------ccCccceEEEecCCCCceeec----cCCCccEEEEecCCCCCcc
Confidence 11 010112223467788887743 34466788999876 5533
No 275
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.19 E-value=0.00087 Score=70.66 Aligned_cols=205 Identities=11% Similarity=0.055 Sum_probs=112.3
Q ss_pred ccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeE-----EeecccceeeeeeecCCceEEEe
Q 004456 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-----LHKLDLRFRSVSWCDDSLALVNE 316 (752)
Q Consensus 242 ~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~spDg~~l~~~ 316 (752)
..+.-.+.||||.. |++... .+-.||.+.- +. ..+. +.........+.|+-|+..+++.
T Consensus 383 ~nIs~~aiSPdg~~-Ia~st~-----------~~~~iy~L~~---~~-~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~ 446 (691)
T KOG2048|consen 383 ENISCAAISPDGNL-IAISTV-----------SRTKIYRLQP---DP-NVKVINVDDVPLALLDASAISFTIDKNKLFLV 446 (691)
T ss_pred cceeeeccCCCCCE-EEEeec-----------cceEEEEecc---Cc-ceeEEEeccchhhhccceeeEEEecCceEEEE
Confidence 34566889999997 666532 2335666654 22 1111 11223345667899999888887
Q ss_pred eecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCe
Q 004456 317 TWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPF 396 (752)
Q Consensus 317 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 396 (752)
+.. ...|..+++.++.. +.+-+....... +..-.+.-|+||.||+..+.. ..
T Consensus 447 s~~---~~~le~~el~~ps~--kel~~~~~~~~~--~~I~~l~~SsdG~yiaa~~t~---------------------g~ 498 (691)
T KOG2048|consen 447 SKN---IFSLEEFELETPSF--KELKSIQSQAKC--PSISRLVVSSDGNYIAAISTR---------------------GQ 498 (691)
T ss_pred ecc---cceeEEEEecCcch--hhhhccccccCC--CcceeEEEcCCCCEEEEEecc---------------------ce
Confidence 622 23577777776522 222111111100 122235679999999998732 25
Q ss_pred eEEEecCCCceeEEeeccchhhhhceeeeecCCcceecccCC-CEEEEEEecCCCCcEEEEEECCCCCeeEeecCCCCCC
Q 004456 397 LDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQ-LKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYP 475 (752)
Q Consensus 397 l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~-~~l~~~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~ 475 (752)
|++|++++++.+.|...-.. .+.. .+++|.. +.|+...++ .++|.+|++..+..++...+.
T Consensus 499 I~v~nl~~~~~~~l~~rln~----~vTa-------~~~~~~~~~~lvvats~----nQv~efdi~~~~l~~ws~~nt--- 560 (691)
T KOG2048|consen 499 IFVYNLETLESHLLKVRLNI----DVTA-------AAFSPFVRNRLVVATSN----NQVFEFDIEARNLTRWSKNNT--- 560 (691)
T ss_pred EEEEEcccceeecchhccCc----ceee-------eeccccccCcEEEEecC----CeEEEEecchhhhhhhhhccc---
Confidence 99999999988776522111 1222 2456443 445444332 369999987666555554432
Q ss_pred CcCCCceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCC
Q 004456 476 TLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPED 523 (752)
Q Consensus 476 ~~~~~~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~ 523 (752)
..++.+.-++ .+ .+.++..-|++ |..+++|++.
T Consensus 561 --~nlpk~~~~l---~~-~~~gisfd~~n---------~s~~~~~~a~ 593 (691)
T KOG2048|consen 561 --RNLPKEPKTL---IP-GIPGISFDPKN---------SSRFIVYDAH 593 (691)
T ss_pred --cccccChhhc---CC-CCceEEeCCCC---------ccEEEEEcCc
Confidence 1111222222 11 35555655543 6788888753
No 276
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=98.18 E-value=0.00066 Score=76.46 Aligned_cols=291 Identities=13% Similarity=0.106 Sum_probs=147.6
Q ss_pred CCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecC
Q 004456 28 PDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPS 107 (752)
Q Consensus 28 ~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~ 107 (752)
+.+..+..++|||||+.++|..+. .....++|+++.+ | .++.... .+....|+|+|+.+++....
T Consensus 57 ~~~~~~~~~~~spdg~~~~~~~~~------~~~~~~l~l~~~~-g---~~~~~~~-----~v~~~~~~~~g~~~~~~~~~ 121 (620)
T COG1506 57 TFGGGVSELRWSPDGSVLAFVSTD------GGRVAQLYLVDVG-G---LITKTAF-----GVSDARWSPDGDRIAFLTAE 121 (620)
T ss_pred ccCCcccccccCCCCCEEEEEecc------CCCcceEEEEecC-C---ceeeeec-----ccccceeCCCCCeEEEEecc
Confidence 445578999999999999998631 1336899999988 4 2221121 35677999999999994322
Q ss_pred CCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCCCccccCCc-cceeccccCCCC
Q 004456 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSPDQ 186 (752)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G~~~~l~~~-~~~~~~~~SpDG 186 (752)
..... +.. . ....+.+....++.. ....++|+++..+....+... ..+..+.+++|+
T Consensus 122 ~~~~~------~~~--~-----------~~~~~~~~~~~~~~g---~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 179 (620)
T COG1506 122 GASKR------DGG--D-----------HLFVDRLPVWFDGRG---GERSDLYVVDIESKLIKLGLGNLDVVSFATDGDG 179 (620)
T ss_pred ccccc------CCc--e-----------eeeecccceeecCCC---CcccceEEEccCcccccccCCCCceeeeeeCCCC
Confidence 11110 000 0 000000001111110 123688999886544444444 677788888888
Q ss_pred ceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCC
Q 004456 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (752)
Q Consensus 187 k~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~ 266 (752)
+.++........ ...-....++...++....++..... ...+.|.+||+. +++.......
T Consensus 180 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~gk~-~~~~~~~~~~ 239 (620)
T COG1506 180 RLVASIRLDDDA------DPWVTNLYVLIEGNGELESLTPGEGS-------------ISKLAFDADGKS-IALLGTESDR 239 (620)
T ss_pred ceeEEeeecccc------CCceEeeEEEecCCCceEEEcCCCce-------------eeeeeeCCCCCe-eEEeccCCcc
Confidence 888887665420 01112333333344445555544433 456799999997 6666543221
Q ss_pred CCccccCccceEEeccCCCCCCCCCeE-Eeecc--cceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccc
Q 004456 267 DANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLD--LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD 343 (752)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~~~--~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 343 (752)
. ......+++++. +.+.... +...+ .......+.-++..++|......+...++.+...+. .......+
T Consensus 240 ~----~~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~-~~~~~~~~ 311 (620)
T COG1506 240 G----LAEGDFILLLDG---ELGEVDGDLSSGDDTRGAWAVEGGLDGDGLLFIATDGGGSSPLFRVDDLGG-GVEGLSGD 311 (620)
T ss_pred C----ccccceEEEEec---cccccceeeccCCcccCcHHhccccCCCcEEEEEecCCCceEEEEEeccCC-ceeeecCC
Confidence 1 113334555442 1122222 11111 111112223455666666544334444555544332 21112222
Q ss_pred cccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEee
Q 004456 344 RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 412 (752)
Q Consensus 344 ~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~ 412 (752)
... . ..++.+|+.+++.... ....+.+++++. ++..+++.
T Consensus 312 --~~~------v--~~f~~~~~~~~~~~s~-----------------~~~p~~i~~~~~--~~~~~~~~ 351 (620)
T COG1506 312 --DGG------V--PGFDVDGRKLALAYSS-----------------PTEPPEIYLYDR--GEEAKLTS 351 (620)
T ss_pred --Cce------E--EEEeeCCCEEEEEecC-----------------CCCccceEEEcC--CCceEEee
Confidence 111 1 2256688888887633 133567888887 44444433
No 277
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.18 E-value=0.00081 Score=72.60 Aligned_cols=217 Identities=12% Similarity=0.003 Sum_probs=122.1
Q ss_pred cccEEEEEcc-C---CCccccCC----c-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEec
Q 004456 155 TTAQLVLGSL-D---GTAKDFGT----P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC 225 (752)
Q Consensus 155 ~~~~i~~~~~-~---G~~~~l~~----~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 225 (752)
...+++.|+. + |+...-+. . ..+..++.|+=|++.++.... +.|.+++++++-.+.-.
T Consensus 420 ~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~-------------G~Id~fNmQSGi~r~sf 486 (910)
T KOG1539|consen 420 GKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSK-------------GTIDRFNMQSGIHRKSF 486 (910)
T ss_pred CcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccC-------------CeEEEEEcccCeeeccc
Confidence 4457788877 2 22221121 2 567788899999988886555 37899999988655432
Q ss_pred C-CCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeee
Q 004456 226 D-LPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSV 304 (752)
Q Consensus 226 ~-~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 304 (752)
. .+.. . ..+.++ +-|+...+...+. ..+.+..|+. +++....-.........+
T Consensus 487 ~~~~ah-~---------~~V~gl--a~D~~n~~~vsa~-----------~~Gilkfw~f---~~k~l~~~l~l~~~~~~i 540 (910)
T KOG1539|consen 487 GDSPAH-K---------GEVTGL--AVDGTNRLLVSAG-----------ADGILKFWDF---KKKVLKKSLRLGSSITGI 540 (910)
T ss_pred ccCccc-c---------CceeEE--EecCCCceEEEcc-----------CcceEEEEec---CCcceeeeeccCCCccee
Confidence 1 1111 1 113333 3455442444332 3446677776 433322222233333344
Q ss_pred eeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEc
Q 004456 305 SWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLN 384 (752)
Q Consensus 305 ~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 384 (752)
..+-....++... ..-.|.++|+.+. ...+.+.+... ....+++|||||||+.++.++
T Consensus 541 v~hr~s~l~a~~~----ddf~I~vvD~~t~--kvvR~f~gh~n------ritd~~FS~DgrWlisasmD~---------- 598 (910)
T KOG1539|consen 541 VYHRVSDLLAIAL----DDFSIRVVDVVTR--KVVREFWGHGN------RITDMTFSPDGRWLISASMDS---------- 598 (910)
T ss_pred eeeehhhhhhhhc----CceeEEEEEchhh--hhhHHhhcccc------ceeeeEeCCCCcEEEEeecCC----------
Confidence 4454554444443 3345888888763 11121211111 122378999999999998653
Q ss_pred cCCCCCCCCCCeeEEEecCCCceeEEeeccchhhhhceeeeecCCcceecccCCCEEEEEEecCCCCcEEEEEE
Q 004456 385 GRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILS 458 (752)
Q Consensus 385 ~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d 458 (752)
.|.+||+.||...-...-+.+ ....++||.|..|+.+..+.+ .||.|-
T Consensus 599 -----------tIr~wDlpt~~lID~~~vd~~------------~~sls~SPngD~LAT~Hvd~~---gIylWs 646 (910)
T KOG1539|consen 599 -----------TIRTWDLPTGTLIDGLLVDSP------------CTSLSFSPNGDFLATVHVDQN---GIYLWS 646 (910)
T ss_pred -----------cEEEEeccCcceeeeEecCCc------------ceeeEECCCCCEEEEEEecCc---eEEEEE
Confidence 499999999887543322211 123589999999988876543 366665
No 278
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.17 E-value=0.00071 Score=69.35 Aligned_cols=65 Identities=8% Similarity=0.021 Sum_probs=42.1
Q ss_pred ecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeee
Q 004456 296 KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (752)
Q Consensus 296 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~ 372 (752)
-....+..++|||||++|+..+ +..-|.+++.++ -+..-+...=++ +.--++||||||||+....
T Consensus 288 ~~~g~in~f~FS~DG~~LA~VS----qDGfLRvF~fdt--~eLlg~mkSYFG------GLLCvcWSPDGKyIvtGGE 352 (636)
T KOG2394|consen 288 IGEGSINEFAFSPDGKYLATVS----QDGFLRIFDFDT--QELLGVMKSYFG------GLLCVCWSPDGKYIVTGGE 352 (636)
T ss_pred eccccccceeEcCCCceEEEEe----cCceEEEeeccH--HHHHHHHHhhcc------ceEEEEEcCCccEEEecCC
Confidence 3344777899999999999988 444577777665 222222221111 2223689999999988763
No 279
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.16 E-value=0.00064 Score=63.52 Aligned_cols=166 Identities=12% Similarity=0.060 Sum_probs=98.2
Q ss_pred cEEEEEcc-CCC-ccccCCccceeccccCCCCceEEEEecccCccccccccCccccEEEEecC-------Cce-eEEecC
Q 004456 157 AQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-------GKL-VRELCD 226 (752)
Q Consensus 157 ~~i~~~~~-~G~-~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~-------~~~-~~~l~~ 226 (752)
..+.+||+ +|+ ..++..+..+..+.||++|+.+++..... ..++..+.++|+. +++ ...+..
T Consensus 74 ~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~--------mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t 145 (327)
T KOG0643|consen 74 QTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQ--------MGYTCFVSVFDIRDDSSDIDSEEPYLKIPT 145 (327)
T ss_pred ceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhh--------cCcceEEEEEEccCChhhhcccCceEEecC
Confidence 56888888 784 44455557888999999999999986542 2334567777765 222 222222
Q ss_pred CCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeE-Eeecccceeeee
Q 004456 227 LPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFRSVS 305 (752)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~~~~~~~~~~ 305 (752)
... -+..+.|+|-|+. |+..- ..+.|-++|+. ++.+... .......+.++.
T Consensus 146 ~~s-------------kit~a~Wg~l~~~-ii~Gh------------e~G~is~~da~--~g~~~v~s~~~h~~~Ind~q 197 (327)
T KOG0643|consen 146 PDS-------------KITSALWGPLGET-IIAGH------------EDGSISIYDAR--TGKELVDSDEEHSSKINDLQ 197 (327)
T ss_pred Ccc-------------ceeeeeecccCCE-EEEec------------CCCcEEEEEcc--cCceeeechhhhcccccccc
Confidence 221 1456899999997 44331 44578888883 2222221 223445688899
Q ss_pred eecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEee
Q 004456 306 WCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (752)
Q Consensus 306 ~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~ 371 (752)
+|+|..+++.++.+. .-.++|+.+-.....-.++..... .+.+|--..++...
T Consensus 198 ~s~d~T~FiT~s~Dt----takl~D~~tl~v~Kty~te~PvN~---------aaisP~~d~VilgG 250 (327)
T KOG0643|consen 198 FSRDRTYFITGSKDT----TAKLVDVRTLEVLKTYTTERPVNT---------AAISPLLDHVILGG 250 (327)
T ss_pred ccCCcceEEecccCc----cceeeeccceeeEEEeeecccccc---------eecccccceEEecC
Confidence 999999988877222 244556555312222334444432 23477666666553
No 280
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.12 E-value=0.0016 Score=65.54 Aligned_cols=145 Identities=12% Similarity=0.065 Sum_probs=80.8
Q ss_pred cEEEEEcc-CCCccccCCccceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCcee-EEecCCCCCCCCC
Q 004456 157 AQLVLGSL-DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIP 234 (752)
Q Consensus 157 ~~i~~~~~-~G~~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~ 234 (752)
..|+.+++ +|+.+.+..+..+.+...--++..|+... . .+++++.+.+.. +.+........ .
T Consensus 47 ~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~-~--------------g~~~~~~~~~~~~t~~~~~~~~~~-~ 110 (307)
T COG3386 47 GRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE-H--------------GVRLLDPDTGGKITLLAEPEDGLP-L 110 (307)
T ss_pred CeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc-c--------------ccEEEeccCCceeEEeccccCCCC-c
Confidence 68999999 67666666554444444333444444332 1 355666554444 44443332111 1
Q ss_pred cccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEE
Q 004456 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALV 314 (752)
Q Consensus 235 ~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~ 314 (752)
....+....|||. ++|................+.||.++. .++..+.+...-.....++||||++.++
T Consensus 111 -------~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p---~g~~~~l~~~~~~~~NGla~SpDg~tly 178 (307)
T COG3386 111 -------NRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDP---DGGVVRLLDDDLTIPNGLAFSPDGKTLY 178 (307)
T ss_pred -------CCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcC---CCCEEEeecCcEEecCceEECCCCCEEE
Confidence 1234678999998 677654310000011123447899885 3444444444344456799999999888
Q ss_pred EeeecccCceeEEEEcCC
Q 004456 315 NETWYKTSQTRTWLVCPG 332 (752)
Q Consensus 315 ~~~~~~~~~~~l~~~~~~ 332 (752)
++- +....||+++.+
T Consensus 179 ~aD---T~~~~i~r~~~d 193 (307)
T COG3386 179 VAD---TPANRIHRYDLD 193 (307)
T ss_pred EEe---CCCCeEEEEecC
Confidence 853 334578888876
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.11 E-value=0.0015 Score=77.77 Aligned_cols=127 Identities=13% Similarity=0.076 Sum_probs=70.8
Q ss_pred eeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCC--CcccCCccccccceeeeeCCC
Q 004456 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI--PVCYNSVREGMRSISWRADKP 254 (752)
Q Consensus 177 ~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~wspDG~ 254 (752)
...++++|++..|++....+ +.|++++..++....+......... .......-..+.+++++|||+
T Consensus 685 P~gVa~dp~~g~LyVad~~~------------~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~ 752 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQ------------HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLK 752 (1057)
T ss_pred CeEEEEecCCCeEEEEECCC------------CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCC
Confidence 34689999888888775443 4789999877755543321100000 000001112466799999999
Q ss_pred ceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecc----------------------cceeeeeeecCCce
Q 004456 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD----------------------LRFRSVSWCDDSLA 312 (752)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~----------------------~~~~~~~~spDg~~ 312 (752)
. ||++.. ..+.|.++|. +++....+..+. .....+++++||+
T Consensus 753 ~-LYVADs-----------~n~~Irv~D~---~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~- 816 (1057)
T PLN02919 753 E-LYIADS-----------ESSSIRALDL---KTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ- 816 (1057)
T ss_pred E-EEEEEC-----------CCCeEEEEEC---CCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-
Confidence 7 777642 3346777776 332222221100 0124567899997
Q ss_pred EEEeeecccCceeEEEEcCCCC
Q 004456 313 LVNETWYKTSQTRTWLVCPGSK 334 (752)
Q Consensus 313 l~~~~~~~~~~~~l~~~~~~~~ 334 (752)
|+++. ..+.+|.+++.+++
T Consensus 817 LYVAD---s~N~rIrviD~~tg 835 (1057)
T PLN02919 817 IYVAD---SYNHKIKKLDPATK 835 (1057)
T ss_pred EEEEE---CCCCEEEEEECCCC
Confidence 33322 23457999998774
No 282
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=98.10 E-value=0.00022 Score=62.90 Aligned_cols=117 Identities=16% Similarity=0.116 Sum_probs=78.8
Q ss_pred CcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCccccccchhhhHHHHHhcChhhhcCCCCCCEEEEEe
Q 004456 602 SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHG 681 (752)
Q Consensus 602 ~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G 681 (752)
..++|++||.|..+++.++.+....++++++++|..-.... ..+......++... ....-|.+++++
T Consensus 59 ~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~~~~~------------~~~~~~~tf~~~p~-~~lpfps~vvaS 125 (181)
T COG3545 59 GPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDVSRPE------------IRPKHLMTFDPIPR-EPLPFPSVVVAS 125 (181)
T ss_pred CCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCccccc------------cchhhccccCCCcc-ccCCCceeEEEe
Confidence 45999999999999999998876689999999986321100 00111112222221 234579999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCC--ccccHHHHHHHHHHHHH
Q 004456 682 EVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYA--ARENVMHVIWETDRWLQ 738 (752)
Q Consensus 682 ~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~--~~~~~~~~~~~~~~fl~ 738 (752)
.+|+.|+ +++++.+.+++... ++....+||... +...+.+-...+.+|+.
T Consensus 126 rnDp~~~--~~~a~~~a~~wgs~-----lv~~g~~GHiN~~sG~g~wpeg~~~l~~~~s 177 (181)
T COG3545 126 RNDPYVS--YEHAEDLANAWGSA-----LVDVGEGGHINAESGFGPWPEGYALLAQLLS 177 (181)
T ss_pred cCCCCCC--HHHHHHHHHhccHh-----heecccccccchhhcCCCcHHHHHHHHHHhh
Confidence 9999999 99999999888654 788888899532 23334444455555544
No 283
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.10 E-value=0.00029 Score=69.07 Aligned_cols=210 Identities=14% Similarity=0.086 Sum_probs=116.4
Q ss_pred cEEEEEcc-CCC-ccccCCc-c--ceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCC
Q 004456 157 AQLVLGSL-DGT-AKDFGTP-A--VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (752)
Q Consensus 157 ~~i~~~~~-~G~-~~~l~~~-~--~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 231 (752)
..++++|. +|+ ...+... + .+---.|||||++|+.+.++.+ .-.+.|-+||+..+ .+++.+-+.
T Consensus 28 ~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~--------~g~G~IgVyd~~~~-~~ri~E~~s-- 96 (305)
T PF07433_consen 28 TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYE--------TGRGVIGVYDAARG-YRRIGEFPS-- 96 (305)
T ss_pred cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccC--------CCcEEEEEEECcCC-cEEEeEecC--
Confidence 46788888 774 3344433 2 2336789999999998876642 22467899999833 333333222
Q ss_pred CCCcccCCccccccceeeeeCCCceEEEEEec-----cCCCCccc-cCccceEEeccCCCCCCCCCeE--Ee--ecccce
Q 004456 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQ-----DRGDANVE-VSPRDIIYTQPAEPAEGEKPEI--LH--KLDLRF 301 (752)
Q Consensus 232 ~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~-----~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~--l~--~~~~~~ 301 (752)
...++.++.|.|||+. |+..+-. +.++...+ ..+.-.|..+|.. +|....+ |. ....++
T Consensus 97 --------~GIGPHel~l~pDG~t-LvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~--sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 97 --------HGIGPHELLLMPDGET-LVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR--SGALLEQVELPPDLHQLSI 165 (305)
T ss_pred --------CCcChhhEEEcCCCCE-EEEEcCCCccCcccCceecChhhcCCceEEEecC--CCceeeeeecCccccccce
Confidence 2234678999999987 7666421 11111111 1233356666652 3332333 32 234468
Q ss_pred eeeeeecCCceEEEeeeccc---CceeEEEEcCCCCCccceecccccc-ccccCCCCCCceeeCCCCCeEEEeeeecCCc
Q 004456 302 RSVSWCDDSLALVNETWYKT---SQTRTWLVCPGSKDVAPRVLFDRVF-ENVYSDPGSPMMTRTSTGTNVIAKIKKENDE 377 (752)
Q Consensus 302 ~~~~~spDg~~l~~~~~~~~---~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~ 377 (752)
+.+++.+||..++-..+... ..--|.+...... ..+..... .........-+++++.+|..++.++-.
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~----~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr---- 237 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA----LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR---- 237 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc----ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC----
Confidence 89999999975444432211 1123444443321 22221111 000011123347789999999988732
Q ss_pred ceEEEEccCCCCCCCCCCeeEEEecCCCceeEEee
Q 004456 378 QIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 412 (752)
Q Consensus 378 ~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~ 412 (752)
-..+.+||.++|+......
T Consensus 238 ----------------Gg~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 238 ----------------GGRVAVWDAATGRLLGSVP 256 (305)
T ss_pred ----------------CCEEEEEECCCCCEeeccc
Confidence 2358899999998765543
No 284
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.08 E-value=0.00038 Score=74.10 Aligned_cols=145 Identities=15% Similarity=0.111 Sum_probs=94.1
Q ss_pred cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeE-EecCCCCCCCCCcccCCccccccceeeeeCC
Q 004456 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (752)
Q Consensus 175 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG 253 (752)
..+..+.+|||||+|++.-.++ .+.+|=+++-+.. .|.. +...+..|..|||+
T Consensus 509 ddvL~v~~Spdgk~LaVsLLdn-------------TVkVyflDtlKFflsLYG-------------HkLPV~smDIS~DS 562 (888)
T KOG0306|consen 509 DDVLCVSVSPDGKLLAVSLLDN-------------TVKVYFLDTLKFFLSLYG-------------HKLPVLSMDISPDS 562 (888)
T ss_pred ccEEEEEEcCCCcEEEEEeccC-------------eEEEEEecceeeeeeecc-------------cccceeEEeccCCc
Confidence 6788999999999999987664 5666666554321 1221 12337789999999
Q ss_pred CceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCC
Q 004456 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (752)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 333 (752)
+ +..+.. ++.+-++|-+|. |...+.+...+..+..+.|-|+. ++.|+...+ ..+..+|...
T Consensus 563 k--livTgS---------ADKnVKiWGLdF----GDCHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD---~kvKqWDg~k 623 (888)
T KOG0306|consen 563 K--LIVTGS---------ADKNVKIWGLDF----GDCHKSFFAHDDSVMSVQFLPKT-HLFFTCGKD---GKVKQWDGEK 623 (888)
T ss_pred C--eEEecc---------CCCceEEecccc----chhhhhhhcccCceeEEEEcccc-eeEEEecCc---ceEEeechhh
Confidence 9 455532 223335555555 56788888888899999999954 466665333 3577777655
Q ss_pred CCccceeccccccccccCCCCCCceeeCCCCCeEEEeee
Q 004456 334 KDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (752)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~ 372 (752)
.+..+..++.....+- ++.+|+|.+++-.++
T Consensus 624 --Fe~iq~L~~H~~ev~c------Lav~~~G~~vvs~sh 654 (888)
T KOG0306|consen 624 --FEEIQKLDGHHSEVWC------LAVSPNGSFVVSSSH 654 (888)
T ss_pred --hhhheeeccchheeee------eEEcCCCCeEEeccC
Confidence 3333434433333222 567999999888874
No 285
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=98.07 E-value=2.5e-05 Score=87.04 Aligned_cols=93 Identities=17% Similarity=0.112 Sum_probs=64.4
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCC-----------------
Q 004456 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN----------------- 575 (752)
Q Consensus 513 ~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~----------------- 575 (752)
.|+||++||.+. ....+..++..|+++||.|++ .+.+|+|++...
T Consensus 449 ~P~VVllHG~~g---------------~~~~~~~lA~~La~~Gy~VIa---iDlpGHG~S~~~~~~~~~~a~~~~~~~y~ 510 (792)
T TIGR03502 449 WPVVIYQHGITG---------------AKENALAFAGTLAAAGVATIA---IDHPLHGARSFDANASGVNATNANVLAYM 510 (792)
T ss_pred CcEEEEeCCCCC---------------CHHHHHHHHHHHHhCCcEEEE---eCCCCCCccccccccccccccccCcccee
Confidence 689999999421 111123567788889999999 455566655221
Q ss_pred --------chhHHHHHHHHHHHHHHHH------Hc----CCCCCCcEEEEEeChHHHHHHHHHHhC
Q 004456 576 --------DRFVEQLVSSAEAAVEEVV------RR----GVADPSRIAVGGHSYGAFMTAHLLAHA 623 (752)
Q Consensus 576 --------~~~~~~~~~d~~~~~~~l~------~~----~~~d~~~i~l~G~S~GG~~a~~~~~~~ 623 (752)
..-+.+.+.|+......+. +. ...+..++.++||||||.++..++...
T Consensus 511 Nl~~l~~aRDn~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~a 576 (792)
T TIGR03502 511 NLASLLVARDNLRQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAYA 576 (792)
T ss_pred ccccccccccCHHHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHhc
Confidence 0124566788888877776 21 125567999999999999999999864
No 286
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.07 E-value=0.0022 Score=65.33 Aligned_cols=150 Identities=7% Similarity=0.085 Sum_probs=88.6
Q ss_pred cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCC
Q 004456 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (752)
Q Consensus 175 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~ 254 (752)
.....++..|+..+++-...++ .+.+|+-.--+-..+...+ .....|.|.|
T Consensus 369 delwgla~hps~~q~~T~gqdk-------------~v~lW~~~k~~wt~~~~d~---------------~~~~~fhpsg- 419 (626)
T KOG2106|consen 369 DELWGLATHPSKNQLLTCGQDK-------------HVRLWNDHKLEWTKIIEDP---------------AECADFHPSG- 419 (626)
T ss_pred cceeeEEcCCChhheeeccCcc-------------eEEEccCCceeEEEEecCc---------------eeEeeccCcc-
Confidence 4566788888887776654442 6778881111112222222 3467899999
Q ss_pred ceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCC
Q 004456 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (752)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 334 (752)
. |+.-. ..++++++|. ++.....+-..+..+.-++|||||..|+.++ ..+.||++.++.+
T Consensus 420 ~-va~Gt------------~~G~w~V~d~---e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs----~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 420 V-VAVGT------------ATGRWFVLDT---ETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS----HDNHIYIYRVSAN 479 (626)
T ss_pred e-EEEee------------ccceEEEEec---ccceeEEEEecCCceEEEEEcCCCCEEEEec----CCCeEEEEEECCC
Confidence 3 55543 3458899998 4444444544577788899999999999987 3334544444433
Q ss_pred CccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEE
Q 004456 335 DVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILL 383 (752)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~ 383 (752)
...-..+...... ..--+.||+|+++|.-.+ .+..+++|
T Consensus 480 g~~y~r~~k~~gs------~ithLDwS~Ds~~~~~~S----~d~eiLyW 518 (626)
T KOG2106|consen 480 GRKYSRVGKCSGS------PITHLDWSSDSQFLVSNS----GDYEILYW 518 (626)
T ss_pred CcEEEEeeeecCc------eeEEeeecCCCceEEecc----CceEEEEE
Confidence 1222222222211 111256999999987776 34555555
No 287
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.06 E-value=9.5e-05 Score=73.03 Aligned_cols=269 Identities=12% Similarity=0.037 Sum_probs=152.2
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (752)
.+....|-++...+|-.. ....|-++++.+++...+-...+ ..+.+..+.+.+++++++..+.+
T Consensus 177 ev~~v~~l~~sdtlatgg----------~Dr~Ik~W~v~~~k~~~~~tLaG--s~g~it~~d~d~~~~~~iAas~d---- 240 (459)
T KOG0288|consen 177 EVHDVEFLRNSDTLATGG----------SDRIIKLWNVLGEKSELISTLAG--SLGNITSIDFDSDNKHVIAASND---- 240 (459)
T ss_pred ccceeEEccCcchhhhcc----------hhhhhhhhhcccchhhhhhhhhc--cCCCcceeeecCCCceEEeecCC----
Confidence 366677877766665532 22344455555555322211111 12246678899999988865331
Q ss_pred CCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CC-CccccCCc-cceeccccCCCCce
Q 004456 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKY 188 (752)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G-~~~~l~~~-~~~~~~~~SpDGk~ 188 (752)
..+.+|++ ++ ...+|+.+ +.+..+.|..+..+
T Consensus 241 ---------------------------------------------~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~ 275 (459)
T KOG0288|consen 241 ---------------------------------------------KNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSR 275 (459)
T ss_pred ---------------------------------------------Cceeeeeccchhhhhhhcccccceeeehhhccccc
Confidence 34566666 34 55667666 77888888877776
Q ss_pred EEEEecccCccccccccCccccEEEEecCCceeE-EecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCC
Q 004456 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (752)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~ 267 (752)
++-.+.+ ..+..||+...... .+..... ..++..+ + ..+++ +
T Consensus 276 vVsgs~D-------------RtiK~WDl~k~~C~kt~l~~S~--------------cnDI~~~--~---~~~~S---g-- 318 (459)
T KOG0288|consen 276 VVSGSAD-------------RTIKLWDLQKAYCSKTVLPGSQ--------------CNDIVCS--I---SDVIS---G-- 318 (459)
T ss_pred eeecccc-------------chhhhhhhhhhheecccccccc--------------ccceEec--c---eeeee---c--
Confidence 4433333 36788888754211 1111100 1122222 0 12221 1
Q ss_pred CccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccc
Q 004456 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE 347 (752)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 347 (752)
.....|..||+ .+.....-....+.+.++..|+||..|+..+.++ .|-++|+.+. +..........
T Consensus 319 -----H~DkkvRfwD~---Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDd----tl~viDlRt~--eI~~~~sA~g~ 384 (459)
T KOG0288|consen 319 -----HFDKKVRFWDI---RSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDD----TLKVIDLRTK--EIRQTFSAEGF 384 (459)
T ss_pred -----ccccceEEEec---cCCceeeEeecCcceeeEeeccCCeEEeeecCCC----ceeeeecccc--cEEEEeecccc
Confidence 12225777887 3445555556667899999999999998876333 4778887763 32322221111
Q ss_pred cccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeeccchhhhhceeeeec
Q 004456 348 NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVF 427 (752)
Q Consensus 348 ~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 427 (752)
...++... .++||||.|++..+.++ .||+|++.+|+++.+...... . .
T Consensus 385 k~asDwtr--vvfSpd~~YvaAGS~dg---------------------sv~iW~v~tgKlE~~l~~s~s-----~----~ 432 (459)
T KOG0288|consen 385 KCASDWTR--VVFSPDGSYVAAGSADG---------------------SVYIWSVFTGKLEKVLSLSTS-----N----A 432 (459)
T ss_pred ccccccce--eEECCCCceeeeccCCC---------------------cEEEEEccCceEEEEeccCCC-----C----c
Confidence 11111122 45899999999887542 599999999998777655432 0 0
Q ss_pred CCcceecccCCCEEEEE
Q 004456 428 GQGEEDINLNQLKILTS 444 (752)
Q Consensus 428 ~~~~~~~s~d~~~l~~~ 444 (752)
+...++|+|-|+.++-.
T Consensus 433 aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 433 AITSLSWNPSGSGLLSA 449 (459)
T ss_pred ceEEEEEcCCCchhhcc
Confidence 12235788877776543
No 288
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=98.05 E-value=0.00046 Score=68.01 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=47.7
Q ss_pred CCceeecCCCC-C-ceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEec
Q 004456 19 GPEKEVHGYPD-G-AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN 96 (752)
Q Consensus 19 g~~~~i~~~~~-~-~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wsp 96 (752)
+..+.+.+... + .....|++||||+.+||+.. ..+...||+....+.....++ .. .+..++|++
T Consensus 10 ~~~~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~-------~~~~~~L~~~~~~~~~~~~~~-g~------~l~~PS~d~ 75 (253)
T PF10647_consen 10 GGVTPVPGALGEGGYDVTSPAVSPDGSRVAAVSE-------GDGGRSLYVGPAGGPVRPVLT-GG------SLTRPSWDP 75 (253)
T ss_pred CceeECCCCcCcCCccccceEECCCCCeEEEEEE-------cCCCCEEEEEcCCCcceeecc-CC------ccccccccC
Confidence 55566654332 2 26889999999999999862 256689999875444444342 21 356789999
Q ss_pred CCcEEEEE
Q 004456 97 NSTLLIFT 104 (752)
Q Consensus 97 dg~~l~~~ 104 (752)
+|...++.
T Consensus 76 ~g~~W~v~ 83 (253)
T PF10647_consen 76 DGWVWTVD 83 (253)
T ss_pred CCCEEEEE
Confidence 97755543
No 289
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.04 E-value=0.0012 Score=70.43 Aligned_cols=199 Identities=15% Similarity=0.115 Sum_probs=120.8
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCc-ceeccCCCCccccccccceEEecCCcEEEEEecCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~ 110 (752)
.++...+|.|...|+. ..+..|-+++.++.+ .|.++.. .+-...|-|.++.|+...
T Consensus 375 dVRsl~vS~d~~~~~S-----------ga~~SikiWn~~t~kciRTi~~~-------y~l~~~Fvpgd~~Iv~G~----- 431 (888)
T KOG0306|consen 375 DVRSLCVSSDSILLAS-----------GAGESIKIWNRDTLKCIRTITCG-------YILASKFVPGDRYIVLGT----- 431 (888)
T ss_pred heeEEEeecCceeeee-----------cCCCcEEEEEccCcceeEEeccc-------cEEEEEecCCCceEEEec-----
Confidence 5788999999877766 344677777777665 4556432 123446779888888652
Q ss_pred CCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCC-ccccCCc-cceeccccCCCCc
Q 004456 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQK 187 (752)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~-~~~l~~~-~~~~~~~~SpDGk 187 (752)
+.+.|-++|+ ++. ...+.-+ +.+.+++.+|||+
T Consensus 432 --------------------------------------------k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~ 467 (888)
T KOG0306|consen 432 --------------------------------------------KNGELQVFDLASASLVETIRAHDGAIWSISLSPDNK 467 (888)
T ss_pred --------------------------------------------cCCceEEEEeehhhhhhhhhccccceeeeeecCCCC
Confidence 2256777777 553 3333333 8888999999999
Q ss_pred eEEEEecccCccccccccCccccEEEEec------CCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEE
Q 004456 188 YVLITSMHRPYSYKVPCARFSQKVQVWTT------DGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (752)
Q Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~l~~~d~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~ 261 (752)
..+..+.+. .+..|+. .+.+.+.|.-....... -...+..+++||||+. |+..
T Consensus 468 g~vT~saDk-------------tVkfWdf~l~~~~~gt~~k~lsl~~~rtLe------l~ddvL~v~~Spdgk~-LaVs- 526 (888)
T KOG0306|consen 468 GFVTGSADK-------------TVKFWDFKLVVSVPGTQKKVLSLKHTRTLE------LEDDVLCVSVSPDGKL-LAVS- 526 (888)
T ss_pred ceEEecCCc-------------EEEEEeEEEEeccCcccceeeeeccceEEe------ccccEEEEEEcCCCcE-EEEE-
Confidence 998877664 4555543 23332322222111000 0122557899999996 5444
Q ss_pred eccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCC
Q 004456 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (752)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 333 (752)
..+..-.+|.+|.. +=...|....-.+.++..|||++.++..+.+. +-.+|=.|...
T Consensus 527 ---------LLdnTVkVyflDtl----KFflsLYGHkLPV~smDIS~DSklivTgSADK--nVKiWGLdFGD 583 (888)
T KOG0306|consen 527 ---------LLDNTVKVYFLDTL----KFFLSLYGHKLPVLSMDISPDSKLIVTGSADK--NVKIWGLDFGD 583 (888)
T ss_pred ---------eccCeEEEEEecce----eeeeeecccccceeEEeccCCcCeEEeccCCC--ceEEeccccch
Confidence 22334467776641 11233555566788888999999888876333 33566555544
No 290
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=98.04 E-value=0.00039 Score=68.36 Aligned_cols=120 Identities=18% Similarity=0.164 Sum_probs=81.8
Q ss_pred CceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCC--C---C-chhHHHHHh
Q 004456 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSG--M---T-PTSSLIFLA 553 (752)
Q Consensus 480 ~~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~--~---~-~~~~~~l~~ 553 (752)
...+++.+.. |+..+.+....-+..+ +..-||++-|.+ ..+.. + . ..+....-+
T Consensus 110 ~~~kRv~Iq~-D~~~IDt~~I~~~~a~-----~~RWiL~s~GNg--------------~~~E~~~~~~~~~~~~~~~ak~ 169 (365)
T PF05677_consen 110 SSVKRVPIQY-DGVKIDTMAIHQPEAK-----PQRWILVSNGNG--------------ECYENRAMLDYKDDWIQRFAKE 169 (365)
T ss_pred cceeeEEEee-CCEEEEEEEeeCCCCC-----CCcEEEEEcCCh--------------HHhhhhhhhccccHHHHHHHHH
Confidence 3678888886 8888888776533321 235688777732 11111 0 0 122223336
Q ss_pred CCcEEEecCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEeChHHHHHHHHHHhC
Q 004456 554 RRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG-VADPSRIAVGGHSYGAFMTAHLLAHA 623 (752)
Q Consensus 554 ~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~l~~~~-~~d~~~i~l~G~S~GG~~a~~~~~~~ 623 (752)
.|..|+. +.++|.|.+..... ..+++.|..++++||+++. .+.+++|++.|||.||.++..++.++
T Consensus 170 ~~aNvl~---fNYpGVg~S~G~~s-~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 170 LGANVLV---FNYPGVGSSTGPPS-RKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred cCCcEEE---ECCCccccCCCCCC-HHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 8899999 44556666655554 4889999999999999754 46789999999999999998866654
No 291
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.03 E-value=0.00077 Score=78.47 Aligned_cols=84 Identities=14% Similarity=0.147 Sum_probs=58.2
Q ss_pred cEEEEEccCCCccccCCc--cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCC
Q 004456 157 AQLVLGSLDGTAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (752)
Q Consensus 157 ~~i~~~~~~G~~~~l~~~--~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (752)
..|.+++-+|+.....+. +-...++|.|.|+.|+....... ..+|..++.+|-....+.-....
T Consensus 237 R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~----------~~~VvFfErNGLrhgeF~l~~~~---- 302 (928)
T PF04762_consen 237 RVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPD----------RHDVVFFERNGLRHGEFTLRFDP---- 302 (928)
T ss_pred eEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCC----------CcEEEEEecCCcEeeeEecCCCC----
Confidence 567788888877766666 56679999999999999875321 14677888887766554433211
Q ss_pred cccCCccccccceeeeeCCCceEEEE
Q 004456 235 VCYNSVREGMRSISWRADKPSTLYWV 260 (752)
Q Consensus 235 ~~~~~~~~~~~~~~wspDG~~~l~~~ 260 (752)
....+..+.|++|+.- |+..
T Consensus 303 -----~~~~v~~l~Wn~ds~i-LAv~ 322 (928)
T PF04762_consen 303 -----EEEKVIELAWNSDSEI-LAVW 322 (928)
T ss_pred -----CCceeeEEEECCCCCE-EEEE
Confidence 1122678999999997 5554
No 292
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.02 E-value=8.3e-05 Score=77.19 Aligned_cols=157 Identities=12% Similarity=0.102 Sum_probs=93.7
Q ss_pred cceeccccCC-CCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCC
Q 004456 175 AVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (752)
Q Consensus 175 ~~~~~~~~Sp-DGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG 253 (752)
..+..+.|.| |-.+|++...+ +.|.+|.+..+...+....+.. .+..+..-+..+.|.|=.
T Consensus 628 t~vtDl~WdPFD~~rLAVa~dd-------------g~i~lWr~~a~gl~e~~~tPe~-----~lt~h~eKI~slRfHPLA 689 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDD-------------GQINLWRLTANGLPENEMTPEK-----ILTIHGEKITSLRFHPLA 689 (1012)
T ss_pred ceeeecccCCCChHHeeecccC-------------ceEEEEEeccCCCCcccCCcce-----eeecccceEEEEEecchh
Confidence 5677889988 66888887544 3677776654432222211111 111111224456666644
Q ss_pred CceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCC
Q 004456 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (752)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 333 (752)
.. ++.+ +.+.-.|-+||+. .......+......+..++|||||+.++... ....|.+++..+
T Consensus 690 ad-vLa~-----------asyd~Ti~lWDl~--~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVc----KDg~~rVy~Prs 751 (1012)
T KOG1445|consen 690 AD-VLAV-----------ASYDSTIELWDLA--NAKLYSRLVGHTDQIFGIAWSPDGRRIATVC----KDGTLRVYEPRS 751 (1012)
T ss_pred hh-Hhhh-----------hhccceeeeeehh--hhhhhheeccCcCceeEEEECCCCcceeeee----cCceEEEeCCCC
Confidence 43 2222 1244578888884 3445566778888899999999999999877 344688998877
Q ss_pred CCccceeccccccccccCCCCCCceeeCCCCCeEEEeeee
Q 004456 334 KDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (752)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~ 373 (752)
+ ...+.+++..-. . ....+.|.-||++|++...+
T Consensus 752 ~---e~pv~Eg~gpvg--t-RgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 752 R---EQPVYEGKGPVG--T-RGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred C---CCccccCCCCcc--C-cceeEEEEecCcEEEEeccc
Confidence 4 244444332110 0 12235589999999888754
No 293
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.02 E-value=0.00047 Score=68.21 Aligned_cols=61 Identities=13% Similarity=0.239 Sum_probs=46.1
Q ss_pred cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCC
Q 004456 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (752)
Q Consensus 175 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~ 254 (752)
..+..++|+||+.+|++.+.++ .+.+||+..++......... -++..++|.|-++
T Consensus 124 ~diydL~Ws~d~~~l~s~s~dn-------------s~~l~Dv~~G~l~~~~~dh~------------~yvqgvawDpl~q 178 (434)
T KOG1009|consen 124 DDIYDLAWSPDSNFLVSGSVDN-------------SVRLWDVHAGQLLAILDDHE------------HYVQGVAWDPLNQ 178 (434)
T ss_pred cchhhhhccCCCceeeeeeccc-------------eEEEEEeccceeEeeccccc------------cccceeecchhhh
Confidence 6788999999999999998875 78999999887655443321 2256789999998
Q ss_pred ceEEEEE
Q 004456 255 STLYWVE 261 (752)
Q Consensus 255 ~~l~~~~ 261 (752)
+ ++..+
T Consensus 179 y-v~s~s 184 (434)
T KOG1009|consen 179 Y-VASKS 184 (434)
T ss_pred h-hhhhc
Confidence 7 54443
No 294
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=98.02 E-value=0.00013 Score=73.50 Aligned_cols=88 Identities=13% Similarity=0.050 Sum_probs=61.0
Q ss_pred hhHHHHHhCCcEEEecCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 004456 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 625 (752)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~ 625 (752)
.....++++|..|+.++. ..+.. ......+-.-+.+.+.++++.+++... .++|-++|+|+||++++.+++..+.
T Consensus 130 s~V~~l~~~g~~vfvIsw-~nPd~--~~~~~~~edYi~e~l~~aid~v~~itg--~~~InliGyCvGGtl~~~ala~~~~ 204 (445)
T COG3243 130 SLVRWLLEQGLDVFVISW-RNPDA--SLAAKNLEDYILEGLSEAIDTVKDITG--QKDINLIGYCVGGTLLAAALALMAA 204 (445)
T ss_pred cHHHHHHHcCCceEEEec-cCchH--hhhhccHHHHHHHHHHHHHHHHHHHhC--ccccceeeEecchHHHHHHHHhhhh
Confidence 356788899999999443 12222 212222333344778888888888643 3689999999999999999988877
Q ss_pred c-eeEEEEccCCCC
Q 004456 626 L-FCCGIARSGSYN 638 (752)
Q Consensus 626 ~-~~~~v~~~~~~~ 638 (752)
+ ++.++.+....|
T Consensus 205 k~I~S~T~lts~~D 218 (445)
T COG3243 205 KRIKSLTLLTSPVD 218 (445)
T ss_pred cccccceeeecchh
Confidence 6 777777665544
No 295
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.01 E-value=0.00029 Score=71.91 Aligned_cols=158 Identities=16% Similarity=0.192 Sum_probs=95.0
Q ss_pred cEEEEEccCCCccccCCc--cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCC
Q 004456 157 AQLVLGSLDGTAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (752)
Q Consensus 157 ~~i~~~~~~G~~~~l~~~--~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (752)
+.+..++-.|.+.+..+. +.+..-.|||||.-|+-...+ +.|.+|...|.-+..+....
T Consensus 85 Gkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GED-------------G~iKiWSrsGMLRStl~Q~~------ 145 (737)
T KOG1524|consen 85 GRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGED-------------GVIKIWSRSGMLRSTVVQNE------ 145 (737)
T ss_pred ceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCC-------------ceEEEEeccchHHHHHhhcC------
Confidence 345555556644444333 777889999999998776444 37888887776544443332
Q ss_pred cccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEE
Q 004456 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALV 314 (752)
Q Consensus 235 ~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~ 314 (752)
..++-.+|.|++.. ++|+. .+++++=.+. ....+-+--..++-+-...|++.+..|+
T Consensus 146 -------~~v~c~~W~p~S~~-vl~c~-------------g~h~~IKpL~--~n~k~i~WkAHDGiiL~~~W~~~s~lI~ 202 (737)
T KOG1524|consen 146 -------ESIRCARWAPNSNS-IVFCQ-------------GGHISIKPLA--ANSKIIRWRAHDGLVLSLSWSTQSNIIA 202 (737)
T ss_pred -------ceeEEEEECCCCCc-eEEec-------------CCeEEEeecc--cccceeEEeccCcEEEEeecCcccccee
Confidence 22778999999999 88884 3367775552 1111222234566677888999988777
Q ss_pred EeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEE
Q 004456 315 NETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIA 369 (752)
Q Consensus 315 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~ 369 (752)
.+. ..-+..++|..+ ..|+....++- ..-+++|.||..+++.
T Consensus 203 sgG----ED~kfKvWD~~G-----~~Lf~S~~~ey----~ITSva~npd~~~~v~ 244 (737)
T KOG1524|consen 203 SGG----EDFRFKIWDAQG-----ANLFTSAAEEY----AITSVAFNPEKDYLLW 244 (737)
T ss_pred ecC----CceeEEeecccC-----cccccCChhcc----ceeeeeeccccceeee
Confidence 654 222455566554 34444333320 2234679999444433
No 296
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=98.00 E-value=0.00035 Score=72.30 Aligned_cols=49 Identities=22% Similarity=0.346 Sum_probs=40.8
Q ss_pred cCCCCCCEEEEEeCCCCCCCCCHHHHHHHH-------HHHHhCCCcEEEEEeCCCCcc
Q 004456 669 ANKIKKPILIIHGEVDDKVGLFPMQAERFF-------DALKGHGALSRLVLLPFEHHV 719 (752)
Q Consensus 669 ~~~~~~P~li~~G~~D~~v~~~~~~~~~~~-------~~l~~~~~~~~~~~~~~~~H~ 719 (752)
+++|++|+.++.|..|.++| ++|+..++ +.++..|..+.+.+-+..||-
T Consensus 293 Lr~Ir~Piivfas~gDnITP--P~QaL~WI~dlY~~~~ei~a~gQ~IVY~~h~~vGHL 348 (581)
T PF11339_consen 293 LRNIRSPIIVFASYGDNITP--PQQALNWIPDLYPDTEEIKAAGQTIVYLLHESVGHL 348 (581)
T ss_pred hhhCCCCEEEEeccCCCCCC--hhHhccchHhhcCCHHHHHhCCCEEEEEecCCCCce
Confidence 56789999999999999999 99985444 456677888888888999995
No 297
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.99 E-value=0.002 Score=64.85 Aligned_cols=126 Identities=13% Similarity=0.076 Sum_probs=72.2
Q ss_pred cEEEEEccCC-CccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCC--c---eeEEecCCCC
Q 004456 157 AQLVLGSLDG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG--K---LVRELCDLPP 229 (752)
Q Consensus 157 ~~i~~~~~~G-~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~--~---~~~~l~~~~~ 229 (752)
+.||+++..| ..+.+... ....+++||||||.+++.-... +.|+.++.+. . ..+.......
T Consensus 143 G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~------------~~i~r~~~d~~~g~~~~~~~~~~~~~ 210 (307)
T COG3386 143 GSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA------------NRIHRYDLDPATGPIGGRRGFVDFDE 210 (307)
T ss_pred ceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCC------------CeEEEEecCcccCccCCcceEEEccC
Confidence 6899999866 44555553 6677999999999999875543 4677776652 1 0010000000
Q ss_pred CCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeee-ec
Q 004456 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSW-CD 308 (752)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-sp 308 (752)
. ...+-.++...||. |+..+ . .....|.+++. ++.....+.-.......++| .|
T Consensus 211 ~----------~G~PDG~~vDadG~--lw~~a-~---------~~g~~v~~~~p---dG~l~~~i~lP~~~~t~~~FgG~ 265 (307)
T COG3386 211 E----------PGLPDGMAVDADGN--LWVAA-V---------WGGGRVVRFNP---DGKLLGEIKLPVKRPTNPAFGGP 265 (307)
T ss_pred C----------CCCCCceEEeCCCC--EEEec-c---------cCCceEEEECC---CCcEEEEEECCCCCCccceEeCC
Confidence 1 11233577777776 33232 1 12236777776 44444444333356666777 57
Q ss_pred CCceEEEeeec
Q 004456 309 DSLALVNETWY 319 (752)
Q Consensus 309 Dg~~l~~~~~~ 319 (752)
+.+.|++++..
T Consensus 266 ~~~~L~iTs~~ 276 (307)
T COG3386 266 DLNTLYITSAR 276 (307)
T ss_pred CcCEEEEEecC
Confidence 77877777643
No 298
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=97.99 E-value=0.00047 Score=65.62 Aligned_cols=251 Identities=11% Similarity=0.027 Sum_probs=132.9
Q ss_pred ccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCcccccccee
Q 004456 170 DFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSIS 248 (752)
Q Consensus 170 ~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 248 (752)
.+-++ ..+..+.|.|-..-|+-.+.++ .+.++|......++-... ..+. ..++.++
T Consensus 167 TlYDH~devn~l~FHPre~ILiS~srD~-------------tvKlFDfsK~saKrA~K~-~qd~---------~~vrsiS 223 (430)
T KOG0640|consen 167 TLYDHVDEVNDLDFHPRETILISGSRDN-------------TVKLFDFSKTSAKRAFKV-FQDT---------EPVRSIS 223 (430)
T ss_pred ehhhccCcccceeecchhheEEeccCCC-------------eEEEEecccHHHHHHHHH-hhcc---------ceeeeEe
Confidence 34455 7788999999887777665553 677777653332221110 0111 2278899
Q ss_pred eeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEe------ecccceeeeeeecCCceEEEeeecccC
Q 004456 249 WRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH------KLDLRFRSVSWCDDSLALVNETWYKTS 322 (752)
Q Consensus 249 wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~------~~~~~~~~~~~spDg~~l~~~~~~~~~ 322 (752)
|.|.|.. |+... ....+.++|+. + .+... ...+.+.++.+|+.|+..+.++ .
T Consensus 224 fHPsGef-llvgT------------dHp~~rlYdv~---T--~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS----k 281 (430)
T KOG0640|consen 224 FHPSGEF-LLVGT------------DHPTLRLYDVN---T--YQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS----K 281 (430)
T ss_pred ecCCCce-EEEec------------CCCceeEEecc---c--eeEeeecCcccccccceeEEEecCCccEEEEec----c
Confidence 9999997 44432 22245566662 1 22221 2345678889999998666655 2
Q ss_pred ceeEEEEcCCCCCccceeccc-cccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEe
Q 004456 323 QTRTWLVCPGSKDVAPRVLFD-RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFD 401 (752)
Q Consensus 323 ~~~l~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d 401 (752)
.+.|.++|--++ +.+.. .+.++- + ..-+..|+.+|+||+-...+. -+++|.
T Consensus 282 DG~IklwDGVS~----rCv~t~~~AH~g-s--evcSa~Ftkn~kyiLsSG~DS---------------------~vkLWE 333 (430)
T KOG0640|consen 282 DGAIKLWDGVSN----RCVRTIGNAHGG-S--EVCSAVFTKNGKYILSSGKDS---------------------TVKLWE 333 (430)
T ss_pred CCcEEeeccccH----HHHHHHHhhcCC-c--eeeeEEEccCCeEEeecCCcc---------------------eeeeee
Confidence 335777774443 33321 111110 0 011234789999887765332 478888
Q ss_pred cCCCceeEEeeccchhhhhceeeeecCCcceecccCCCEEEEEEecCCCCcEEEEEECCCCCeeEeecCCCCCC--CcCC
Q 004456 402 INTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYP--TLAS 479 (752)
Q Consensus 402 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~--~~~~ 479 (752)
+.||++-......+. .-.+ .-.....|.-...+++|-. .....+..||..++..+.|-.+....+ ....
T Consensus 334 i~t~R~l~~YtGAg~----tgrq--~~rtqAvFNhtEdyVl~pD---Eas~slcsWdaRtadr~~l~slgHn~a~R~i~H 404 (430)
T KOG0640|consen 334 ISTGRMLKEYTGAGT----TGRQ--KHRTQAVFNHTEDYVLFPD---EASNSLCSWDARTADRVALLSLGHNGAVRWIVH 404 (430)
T ss_pred ecCCceEEEEecCCc----ccch--hhhhhhhhcCccceEEccc---cccCceeeccccchhhhhhcccCCCCCceEEEe
Confidence 888877554433211 0000 0011233444445555543 234467788877766655544432211 1222
Q ss_pred CceEEEEEEcCCCcEEEEEEEeC
Q 004456 480 LQKEMIKYQRKDGVPLTATLYLP 502 (752)
Q Consensus 480 ~~~~~~~~~~~~g~~~~~~l~~P 502 (752)
.+++.......++.+...|...|
T Consensus 405 SP~~p~FmTcsdD~raRFWyrr~ 427 (430)
T KOG0640|consen 405 SPVEPAFMTCSDDFRARFWYRRV 427 (430)
T ss_pred CCCCCceeeecccceeeeeeecc
Confidence 34455555566666666665544
No 299
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.98 E-value=0.0068 Score=57.94 Aligned_cols=204 Identities=16% Similarity=0.188 Sum_probs=117.1
Q ss_pred ceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCc--ceeccCCCCccccccccceEEecCC
Q 004456 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPLFESPDICLNAVFGSFVWVNNS 98 (752)
Q Consensus 21 ~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~--~~~lt~~~~~~~~~~~~~~~wspdg 98 (752)
-..|.+.|+. .++...|||.-+.++.++.- ++...+|-+... |. .+..-.... .+....||.||
T Consensus 19 d~ev~~pP~D-sIS~l~FSP~~~~~~~A~SW-------D~tVR~wevq~~-g~~~~ka~~~~~~-----PvL~v~Wsddg 84 (347)
T KOG0647|consen 19 DYEVPNPPED-SISALAFSPQADNLLAAGSW-------DGTVRIWEVQNS-GQLVPKAQQSHDG-----PVLDVCWSDDG 84 (347)
T ss_pred ceecCCCccc-chheeEeccccCceEEeccc-------CCceEEEEEecC-CcccchhhhccCC-----CeEEEEEccCC
Confidence 3455655554 69999999955555433221 445566665543 33 222222222 46688999999
Q ss_pred cEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCccccCCc-cc
Q 004456 99 TLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AV 176 (752)
Q Consensus 99 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~~l~~~-~~ 176 (752)
..++...- ..++.++|+ +|+..++..+ +.
T Consensus 85 skVf~g~~-------------------------------------------------Dk~~k~wDL~S~Q~~~v~~Hd~p 115 (347)
T KOG0647|consen 85 SKVFSGGC-------------------------------------------------DKQAKLWDLASGQVSQVAAHDAP 115 (347)
T ss_pred ceEEeecc-------------------------------------------------CCceEEEEccCCCeeeeeecccc
Confidence 86665421 157889999 8899999888 88
Q ss_pred eeccccCCCCc--eEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCC
Q 004456 177 YTAVEPSPDQK--YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (752)
Q Consensus 177 ~~~~~~SpDGk--~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~ 254 (752)
+..+.|=+-.. .|+-.+.+ ..|..||........-..+|.. ....|=.
T Consensus 116 vkt~~wv~~~~~~cl~TGSWD-------------KTlKfWD~R~~~pv~t~~LPeR-----------------vYa~Dv~ 165 (347)
T KOG0647|consen 116 VKTCHWVPGMNYQCLVTGSWD-------------KTLKFWDTRSSNPVATLQLPER-----------------VYAADVL 165 (347)
T ss_pred eeEEEEecCCCcceeEecccc-------------cceeecccCCCCeeeeeeccce-----------------eeehhcc
Confidence 88888877765 44444444 3788899876654433333322 3333333
Q ss_pred ceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEE-eecccceeeeeeecCCceEEEeeecccCceeEEEEcCCC
Q 004456 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL-HKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (752)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 333 (752)
+-++.++.. ...|.+++++.. ..+.+.+ .......+.++.-+|.+..+.++ .++++.+..++.
T Consensus 166 ~pm~vVata-----------~r~i~vynL~n~-~te~k~~~SpLk~Q~R~va~f~d~~~~alGs----iEGrv~iq~id~ 229 (347)
T KOG0647|consen 166 YPMAVVATA-----------ERHIAVYNLENP-PTEFKRIESPLKWQTRCVACFQDKDGFALGS----IEGRVAIQYIDD 229 (347)
T ss_pred CceeEEEec-----------CCcEEEEEcCCC-cchhhhhcCcccceeeEEEEEecCCceEeee----ecceEEEEecCC
Confidence 324444322 124555666311 1122222 34556677888888877776665 333454444444
No 300
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=97.96 E-value=0.0015 Score=61.18 Aligned_cols=190 Identities=9% Similarity=0.040 Sum_probs=114.2
Q ss_pred cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCC
Q 004456 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (752)
Q Consensus 175 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~ 254 (752)
+.+..+..+-|.++++-.+.+ ..+.+||+.+++.......+.. ++...|+++|.
T Consensus 53 GavW~~Did~~s~~liTGSAD-------------~t~kLWDv~tGk~la~~k~~~~-------------Vk~~~F~~~gn 106 (327)
T KOG0643|consen 53 GAVWCCDIDWDSKHLITGSAD-------------QTAKLWDVETGKQLATWKTNSP-------------VKRVDFSFGGN 106 (327)
T ss_pred ceEEEEEecCCcceeeecccc-------------ceeEEEEcCCCcEEEEeecCCe-------------eEEEeeccCCc
Confidence 444555555567777666555 3789999998876665555433 77889999999
Q ss_pred ceEEEEEeccCCCCccccCccceEEeccCCCC----CCCC-CeEEeecccceeeeeeecCCceEEEeeecccCceeEEEE
Q 004456 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPA----EGEK-PEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (752)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~-~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 329 (752)
. ++++.... ......+.+.++... .+.+ ...+...+..+....|+|-++.|++.. ....|-++
T Consensus 107 ~-~l~~tD~~-------mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh----e~G~is~~ 174 (327)
T KOG0643|consen 107 L-ILASTDKQ-------MGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH----EDGSISIY 174 (327)
T ss_pred E-EEEEehhh-------cCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec----CCCcEEEE
Confidence 7 44443221 123345666666422 1334 344555666677788999999999987 33358888
Q ss_pred cCCCCCccceec-cccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCcee
Q 004456 330 CPGSKDVAPRVL-FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKE 408 (752)
Q Consensus 330 ~~~~~~~~~~~l-~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~ 408 (752)
|+.++. +.... ..+.. ....+++|+|..+++-.+.+. .-.++|..+-+..
T Consensus 175 da~~g~-~~v~s~~~h~~-------~Ind~q~s~d~T~FiT~s~Dt---------------------takl~D~~tl~v~ 225 (327)
T KOG0643|consen 175 DARTGK-ELVDSDEEHSS-------KINDLQFSRDRTYFITGSKDT---------------------TAKLVDVRTLEVL 225 (327)
T ss_pred EcccCc-eeeechhhhcc-------ccccccccCCcceEEecccCc---------------------cceeeeccceeeE
Confidence 888751 11111 11111 222367899999988877432 2457788776665
Q ss_pred EEeeccchhhhhceeeeecCCcceecccCCCEEEE
Q 004456 409 RIWESNREKYFETAVALVFGQGEEDINLNQLKILT 443 (752)
Q Consensus 409 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~ 443 (752)
+-...+.+ +. ..+++|--..++.
T Consensus 226 Kty~te~P-----vN-------~aaisP~~d~Vil 248 (327)
T KOG0643|consen 226 KTYTTERP-----VN-------TAAISPLLDHVIL 248 (327)
T ss_pred EEeeeccc-----cc-------ceecccccceEEe
Confidence 54443332 11 1356666666655
No 301
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.96 E-value=0.0019 Score=65.51 Aligned_cols=264 Identities=11% Similarity=0.084 Sum_probs=159.4
Q ss_pred eeceeEecCCCCe-EEEeeccccccccccCcceEEEEEcccCccee-ccCCCCccccccccceEEecCCcEEEEEecCCC
Q 004456 32 KINFVSWSPDGKR-IAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (752)
Q Consensus 32 ~~~~~~~SPDG~~-ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~-lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~ 109 (752)
.+...+|||..-+ +|.++ + ..+-+++..+-+.+. +..... .+.+..+-.||+.|+..-
T Consensus 28 ~vssl~fsp~~P~d~aVt~---------S--~rvqly~~~~~~~~k~~srFk~-----~v~s~~fR~DG~LlaaGD---- 87 (487)
T KOG0310|consen 28 SVSSLCFSPKHPYDFAVTS---------S--VRVQLYSSVTRSVRKTFSRFKD-----VVYSVDFRSDGRLLAAGD---- 87 (487)
T ss_pred cceeEecCCCCCCceEEec---------c--cEEEEEecchhhhhhhHHhhcc-----ceeEEEeecCCeEEEccC----
Confidence 6888999995533 34432 2 344444545544443 332232 456778889999887541
Q ss_pred CCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCC--CccccCCc-cceeccccCCCC
Q 004456 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--TAKDFGTP-AVYTAVEPSPDQ 186 (752)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G--~~~~l~~~-~~~~~~~~SpDG 186 (752)
..+.+.++|.+- ..+.+-.+ ..+....|+|++
T Consensus 88 ---------------------------------------------~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d 122 (487)
T KOG0310|consen 88 ---------------------------------------------ESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQD 122 (487)
T ss_pred ---------------------------------------------CcCcEEEeccccHHHHHHHhhccCceeEEEecccC
Confidence 115677777633 44555555 778899999999
Q ss_pred ceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCC
Q 004456 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (752)
Q Consensus 187 k~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~ 266 (752)
+.++....+. ..+..||+++..+ ++... +..+++|..+|+|-... ++++.
T Consensus 123 ~t~l~s~sDd------------~v~k~~d~s~a~v-~~~l~-----------~htDYVR~g~~~~~~~h-ivvtG----- 172 (487)
T KOG0310|consen 123 NTMLVSGSDD------------KVVKYWDLSTAYV-QAELS-----------GHTDYVRCGDISPANDH-IVVTG----- 172 (487)
T ss_pred CeEEEecCCC------------ceEEEEEcCCcEE-EEEec-----------CCcceeEeeccccCCCe-EEEec-----
Confidence 9998887664 3677889988865 22211 22345788899998776 77764
Q ss_pred CCccccCccceEEeccCCCCCCCCCeEE-eecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccc
Q 004456 267 DANVEVSPRDIIYTQPAEPAEGEKPEIL-HKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV 345 (752)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 345 (752)
.+.+.+.+||+. ......+ ......+-.+.+-|.|..|+.+. + +.+.+||+.++ + +.++...
T Consensus 173 ------sYDg~vrl~DtR---~~~~~v~elnhg~pVe~vl~lpsgs~iasAg----G-n~vkVWDl~~G-~--qll~~~~ 235 (487)
T KOG0310|consen 173 ------SYDGKVRLWDTR---SLTSRVVELNHGCPVESVLALPSGSLIASAG----G-NSVKVWDLTTG-G--QLLTSMF 235 (487)
T ss_pred ------CCCceEEEEEec---cCCceeEEecCCCceeeEEEcCCCCEEEEcC----C-CeEEEEEecCC-c--eehhhhh
Confidence 255578888873 3323332 34555677788889988777754 2 24888888864 2 2222111
Q ss_pred -cccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeeccchhhhhceee
Q 004456 346 -FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVA 424 (752)
Q Consensus 346 -~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~ 424 (752)
... ..-.++...|++.|+-.+.+. ++.++|..+-++..=|.-..
T Consensus 236 ~H~K-----tVTcL~l~s~~~rLlS~sLD~---------------------~VKVfd~t~~Kvv~s~~~~~--------- 280 (487)
T KOG0310|consen 236 NHNK-----TVTCLRLASDSTRLLSGSLDR---------------------HVKVFDTTNYKVVHSWKYPG--------- 280 (487)
T ss_pred cccc-----eEEEEEeecCCceEeeccccc---------------------ceEEEEccceEEEEeeeccc---------
Confidence 111 001144566888887766442 57788854444332232222
Q ss_pred eecCCcceecccCCCEEEEEE
Q 004456 425 LVFGQGEEDINLNQLKILTSK 445 (752)
Q Consensus 425 ~~~~~~~~~~s~d~~~l~~~~ 445 (752)
..-.+++|||+..++.--
T Consensus 281 ---pvLsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 281 ---PVLSIAVSPDDQTVVIGM 298 (487)
T ss_pred ---ceeeEEecCCCceEEEec
Confidence 122358899999887754
No 302
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=97.95 E-value=2.6e-05 Score=60.70 Aligned_cols=75 Identities=17% Similarity=0.169 Sum_probs=55.1
Q ss_pred CcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCC
Q 004456 492 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGD 571 (752)
Q Consensus 492 g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~ 571 (752)
|.+|.+..|.|+. . +..+|+++||.+ .....+..++..|+++||.|++ .|.+|+|.
T Consensus 1 G~~L~~~~w~p~~-----~-~k~~v~i~HG~~---------------eh~~ry~~~a~~L~~~G~~V~~---~D~rGhG~ 56 (79)
T PF12146_consen 1 GTKLFYRRWKPEN-----P-PKAVVVIVHGFG---------------EHSGRYAHLAEFLAEQGYAVFA---YDHRGHGR 56 (79)
T ss_pred CcEEEEEEecCCC-----C-CCEEEEEeCCcH---------------HHHHHHHHHHHHHHhCCCEEEE---ECCCcCCC
Confidence 5678999999986 2 479999999952 2334445678899999999999 77788888
Q ss_pred CCCC---chhHHHHHHHHHHHH
Q 004456 572 KLPN---DRFVEQLVSSAEAAV 590 (752)
Q Consensus 572 ~~~~---~~~~~~~~~d~~~~~ 590 (752)
+... ...++..++|+...+
T Consensus 57 S~g~rg~~~~~~~~v~D~~~~~ 78 (79)
T PF12146_consen 57 SEGKRGHIDSFDDYVDDLHQFI 78 (79)
T ss_pred CCCcccccCCHHHHHHHHHHHh
Confidence 8543 234566677776654
No 303
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=97.95 E-value=0.00051 Score=76.34 Aligned_cols=254 Identities=15% Similarity=0.184 Sum_probs=133.0
Q ss_pred eeEEeecCCCCCCCCceee-cCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCcc
Q 004456 6 GIGIHRLLPDDSLGPEKEV-HGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (752)
Q Consensus 6 ~i~~~~~~~~~~~g~~~~i-~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~ 84 (752)
+|.+.+.++ +..+.| .. ....+..|+|||||++|||.+.. ..-.+...||+.++.+.....+--.-+
T Consensus 330 ~L~~~D~dG----~n~~~ve~~--~~~~i~sP~~SPDG~~vAY~ts~----e~~~g~s~vYv~~L~t~~~~~vkl~ve-- 397 (912)
T TIGR02171 330 NLAYIDYTK----GASRAVEIE--DTISVYHPDISPDGKKVAFCTGI----EGLPGKSSVYVRNLNASGSGLVKLPVE-- 397 (912)
T ss_pred eEEEEecCC----CCceEEEec--CCCceecCcCCCCCCEEEEEEee----cCCCCCceEEEEehhccCCCceEeecc--
Confidence 567777777 777766 42 23358889999999999994331 111256889999998755433311111
Q ss_pred ccccccceEE--ecCCc-EEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEE
Q 004456 85 LNAVFGSFVW--VNNST-LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (752)
Q Consensus 85 ~~~~~~~~~w--spdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~ 161 (752)
+ ..-++| ..+|. .|+|++....+. .+. .| ....-|.
T Consensus 398 -~--aaiprwrv~e~gdt~ivyv~~a~nn~----------------------------------d~~-~~---~~~stw~ 436 (912)
T TIGR02171 398 -N--AAIPRWRVLENGDTVIVYVSDASNNK----------------------------------DDA-TF---AAYSTWQ 436 (912)
T ss_pred -c--ccccceEecCCCCeEEEEEcCCCCCc----------------------------------chh-hh---hhcceEE
Confidence 1 223456 46555 566765433222 111 11 1134566
Q ss_pred Ecc-CC---CccccCCccceeccccCCCCceEEEEecccCccccccccCccccEEEEe--cCCceeEEecCCCCCCCCCc
Q 004456 162 GSL-DG---TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWT--TDGKLVRELCDLPPAEDIPV 235 (752)
Q Consensus 162 ~~~-~G---~~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~~~l~~~~~~~~~~~ 235 (752)
+.. +| ++++|.++..... .|.| +.|+++..+- -...+.+ +..+ ..-.
T Consensus 437 v~f~~gkfg~p~kl~dga~hgg--vs~~-~~lavtga~l------------lr~~~~~~~~~~~------------~~~v 489 (912)
T TIGR02171 437 VPFANGKFGTPKKLFDGAYHGG--VSED-LNLAVSGARL------------LRAHVANEDVDNG------------KDDV 489 (912)
T ss_pred EEecCCCCCCchhhhccccccc--cccC-CceeeehhhH------------hhhhhcccccccC------------ccce
Confidence 666 66 6677765522112 2323 3455553321 0011111 1111 0111
Q ss_pred ccCCccccccceeeeeCCCceEEEEEeccCCCCccc---cCccceEEeccCCCCCCCCCeEEeecccc-eeeeeeecC--
Q 004456 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVE---VSPRDIIYTQPAEPAEGEKPEILHKLDLR-FRSVSWCDD-- 309 (752)
Q Consensus 236 ~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~spD-- 309 (752)
+++++. .-+.+.+.||.+.-+|..+....+..+- -.-..+|++.|. +|..++.+....+. .....|--.
T Consensus 490 wyn~eq--acn~sl~~d~~~rt~fldfgg~tg~~fvg~~y~~he~~lvads---~gklv~~v~ap~gytfdh~ew~~~~~ 564 (912)
T TIGR02171 490 WYNGEQ--ACNASLAKDGSKRTLFLDFGGSTGQAFVGQKYGVHERLLVADS---KGKLVRAVAAPAGYTFDHTEWVTGRS 564 (912)
T ss_pred eecchh--ccchhhhccCCcceEEEecCCccchhhccccccceeEEEEecC---CCchhhhccCCCCccccchhhhcCCC
Confidence 222222 2256788888776788876544333221 112337788776 67666766644432 223336543
Q ss_pred CceEEEeeecccCceeEEEEcCCCCCccceecccccc
Q 004456 310 SLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVF 346 (752)
Q Consensus 310 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 346 (752)
+-.++..++.++....|-++++.++ +...|.++..
T Consensus 565 ~~~vatl~n~~g~h~ki~lv~~~~~--~i~~l~eg~e 599 (912)
T TIGR02171 565 NLAVATLTNVNGAHKKIALINLSDS--KVTELVEGDE 599 (912)
T ss_pred ceEEEEeecCCCccceEEEEEcCCC--ceEEeecccc
Confidence 3334444566666678999999884 4555555443
No 304
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=97.94 E-value=0.00028 Score=73.57 Aligned_cols=103 Identities=18% Similarity=0.227 Sum_probs=71.4
Q ss_pred CCCCCCcEEEEEeChHHHHHHHHHHhCCC-ceeEEEEccCCCCCCCCccCccccccchhhhHHHHHhcChhhhcCCCCCC
Q 004456 597 GVADPSRIAVGGHSYGAFMTAHLLAHAPH-LFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKP 675 (752)
Q Consensus 597 ~~~d~~~i~l~G~S~GG~~a~~~~~~~p~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 675 (752)
+......|.|+|+|||+.+++++...+-+ .+.++|++.=..+-..-+-+. +-+.+-.++.|
T Consensus 245 gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~vdgprgi------------------rDE~Lldmk~P 306 (784)
T KOG3253|consen 245 GEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDTVDGPRGI------------------RDEALLDMKQP 306 (784)
T ss_pred ccCCCCceEEEecccCceeeEEeccccCCceEEEEEEecccccCCCcccCC------------------cchhhHhcCCc
Confidence 44566789999999999888888765532 366766665332211111111 11123346899
Q ss_pred EEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCc
Q 004456 676 ILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAA 722 (752)
Q Consensus 676 ~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~ 722 (752)
+||+.|.+|..++ +...+++.+++++ +++++++.+++|.+..
T Consensus 307 VLFV~Gsnd~mcs--pn~ME~vreKMqA---~~elhVI~~adhsmai 348 (784)
T KOG3253|consen 307 VLFVIGSNDHMCS--PNSMEEVREKMQA---EVELHVIGGADHSMAI 348 (784)
T ss_pred eEEEecCCcccCC--HHHHHHHHHHhhc---cceEEEecCCCccccC
Confidence 9999999999977 8888888777765 4789999999998653
No 305
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.0013 Score=60.80 Aligned_cols=237 Identities=18% Similarity=0.211 Sum_probs=125.2
Q ss_pred cceeEEeecCCCCCCCCceeecCCCC--CceeceeEecC--CCCeEEEeeccccccccccCcceEEEEEcccCcceeccC
Q 004456 4 FTGIGIHRLLPDDSLGPEKEVHGYPD--GAKINFVSWSP--DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE 79 (752)
Q Consensus 4 ~~~i~~~~~~~~~~~g~~~~i~~~~~--~~~~~~~~~SP--DG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~ 79 (752)
...|.+..+..+ |+.+.+..+.. | -+....|.. -|..||.. ++..++.|+.-++|.-.++..
T Consensus 32 D~tVkIf~v~~n---~~s~ll~~L~Gh~G-PVwqv~wahPk~G~iLASc----------sYDgkVIiWke~~g~w~k~~e 97 (299)
T KOG1332|consen 32 DGTVKIFEVRNN---GQSKLLAELTGHSG-PVWKVAWAHPKFGTILASC----------SYDGKVIIWKEENGRWTKAYE 97 (299)
T ss_pred CccEEEEEEcCC---CCceeeeEecCCCC-CeeEEeecccccCcEeeEe----------ecCceEEEEecCCCchhhhhh
Confidence 345566666553 33233332221 2 255566665 68888886 566888888877886555532
Q ss_pred CCCccccccccceEEecCCc--EEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhccc
Q 004456 80 SPDICLNAVFGSFVWVNNST--LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTA 157 (752)
Q Consensus 80 ~~~~~~~~~~~~~~wspdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 157 (752)
... ....+...+|.|.+- .|++.+.+ + .-
T Consensus 98 ~~~--h~~SVNsV~wapheygl~LacasSD--G---------------------------------------------~v 128 (299)
T KOG1332|consen 98 HAA--HSASVNSVAWAPHEYGLLLACASSD--G---------------------------------------------KV 128 (299)
T ss_pred hhh--hcccceeecccccccceEEEEeeCC--C---------------------------------------------cE
Confidence 222 233567889999744 55555331 1 13
Q ss_pred EEEEEccCC--CccccCCc--cceeccccCCC---CceEEEEecccCccccccccCccccEEEEecCCce---eEEecCC
Q 004456 158 QLVLGSLDG--TAKDFGTP--AVYTAVEPSPD---QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL---VRELCDL 227 (752)
Q Consensus 158 ~i~~~~~~G--~~~~l~~~--~~~~~~~~SpD---Gk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~ 227 (752)
.|..++-+| ...++... -++.+++|.|- |..+-- ....+ .+....+.-.+.+.+|+.+..+ .+.|.
T Consensus 129 svl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~-~~~~~-~krlvSgGcDn~VkiW~~~~~~w~~e~~l~-- 204 (299)
T KOG1332|consen 129 SVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQ-GPAAK-VKRLVSGGCDNLVKIWKFDSDSWKLERTLE-- 204 (299)
T ss_pred EEEEEcCCCCccchhhhhccccccceeeecCcCCCcccccc-Ccccc-cceeeccCCccceeeeecCCcchhhhhhhh--
Confidence 455555554 44444333 78889999998 522110 00000 0001111122456677766531 11122
Q ss_pred CCCCCCCcccCCccccccceeeeeCC---CceEEEEEeccCCCCccccCccceEEeccCCCCCCC--CCeEEeeccccee
Q 004456 228 PPAEDIPVCYNSVREGMRSISWRADK---PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE--KPEILHKLDLRFR 302 (752)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~wspDG---~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~l~~~~~~~~ 302 (752)
++..=+|+++|.|.- +..|+-++ ..+.++++..+ .+.+ +.+.|.+....+.
T Consensus 205 -----------~H~dwVRDVAwaP~~gl~~s~iAS~S------------qDg~viIwt~~-~e~e~wk~tll~~f~~~~w 260 (299)
T KOG1332|consen 205 -----------GHKDWVRDVAWAPSVGLPKSTIASCS------------QDGTVIIWTKD-EEYEPWKKTLLEEFPDVVW 260 (299)
T ss_pred -----------hcchhhhhhhhccccCCCceeeEEec------------CCCcEEEEEec-CccCcccccccccCCcceE
Confidence 222337899999964 22133332 22244444442 1222 2333556666788
Q ss_pred eeeeecCCceEEEeeecccCceeEEEEcCCC
Q 004456 303 SVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (752)
Q Consensus 303 ~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 333 (752)
.++||.-|..|+.+. ..+.-.||.=++++
T Consensus 261 ~vSWS~sGn~LaVs~--GdNkvtlwke~~~G 289 (299)
T KOG1332|consen 261 RVSWSLSGNILAVSG--GDNKVTLWKENVDG 289 (299)
T ss_pred EEEEeccccEEEEec--CCcEEEEEEeCCCC
Confidence 899999999998865 22344566666554
No 306
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.91 E-value=0.001 Score=64.88 Aligned_cols=235 Identities=12% Similarity=0.091 Sum_probs=132.1
Q ss_pred cEEEEEcc-CCCccc-cCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCce--eEEecCCCCCC
Q 004456 157 AQLVLGSL-DGTAKD-FGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL--VRELCDLPPAE 231 (752)
Q Consensus 157 ~~i~~~~~-~G~~~~-l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~ 231 (752)
..|+++|. +|+..+ +-.+ ....++.|+--||.|+-.+.+- .+.+||.+... .+.+....
T Consensus 130 ~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl-------------~~~LWd~~~~~~c~ks~~gh~--- 193 (406)
T KOG0295|consen 130 ATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDL-------------SAKLWDFDTFFRCIKSLIGHE--- 193 (406)
T ss_pred ceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCcc-------------chhheeHHHHHHHHHHhcCcc---
Confidence 68999999 886543 3333 5688999999999998876653 36778876531 12222222
Q ss_pred CCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCc
Q 004456 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSL 311 (752)
Q Consensus 232 ~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~ 311 (752)
-++..+.|-|-|.+ |+.++ ....+..|+.+ .+-....+.....-+..++.+.||.
T Consensus 194 ----------h~vS~V~f~P~gd~-ilS~s------------rD~tik~We~~--tg~cv~t~~~h~ewvr~v~v~~DGt 248 (406)
T KOG0295|consen 194 ----------HGVSSVFFLPLGDH-ILSCS------------RDNTIKAWECD--TGYCVKTFPGHSEWVRMVRVNQDGT 248 (406)
T ss_pred ----------cceeeEEEEecCCe-eeecc------------cccceeEEecc--cceeEEeccCchHhEEEEEecCCee
Confidence 23667899999976 55553 33367777774 4456666777777788888899998
Q ss_pred eEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCc-ceEEEEccCCCCC
Q 004456 312 ALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDE-QIYILLNGRGFTP 390 (752)
Q Consensus 312 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~-~~~~~~~~~g~~~ 390 (752)
.++..++. +.-++|.+...... ...+..+....- ++|.|...+=-...+..+++ +.++.....+
T Consensus 249 i~As~s~d--qtl~vW~~~t~~~k-~~lR~hEh~vEc---------i~wap~~~~~~i~~at~~~~~~~~l~s~SrD--- 313 (406)
T KOG0295|consen 249 IIASCSND--QTLRVWVVATKQCK-AELREHEHPVEC---------IAWAPESSYPSISEATGSTNGGQVLGSGSRD--- 313 (406)
T ss_pred EEEecCCC--ceEEEEEeccchhh-hhhhccccceEE---------EEecccccCcchhhccCCCCCccEEEeeccc---
Confidence 77665522 33345554433210 001111111111 22333332211111111111 1111111111
Q ss_pred CCCCCeeEEEecCCCceeEEeeccchhhhhceeeeecCCcceecccCCCEEEEEEecCCCCcEEEEEECCCCCeeE
Q 004456 391 EGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 466 (752)
Q Consensus 391 ~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~~g~~~~ 466 (752)
..|..||+.+|..---. .+..+.....+|+|.|++|+-++.+.+ |.+||+.+++..+
T Consensus 314 ----ktIk~wdv~tg~cL~tL-----------~ghdnwVr~~af~p~Gkyi~ScaDDkt----lrvwdl~~~~cmk 370 (406)
T KOG0295|consen 314 ----KTIKIWDVSTGMCLFTL-----------VGHDNWVRGVAFSPGGKYILSCADDKT----LRVWDLKNLQCMK 370 (406)
T ss_pred ----ceEEEEeccCCeEEEEE-----------ecccceeeeeEEcCCCeEEEEEecCCc----EEEEEeccceeee
Confidence 14899999998542111 112223334689999999977765444 8899988877554
No 307
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=97.91 E-value=0.00049 Score=72.62 Aligned_cols=76 Identities=8% Similarity=-0.000 Sum_probs=49.4
Q ss_pred ccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeeccc
Q 004456 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (752)
Q Consensus 242 ~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~ 321 (752)
..+..++-||+|+. ++-.+ .+.. .....|++|+.... .+.+.|......+..++|||||++|+..+.++
T Consensus 526 yEv~~l~~s~~gnl-iASaC-KS~~------~ehAvI~lw~t~~W--~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR- 594 (764)
T KOG1063|consen 526 YEVYALAISPTGNL-IASAC-KSSL------KEHAVIRLWNTANW--LQVQELEGHSLTVTRLAFSPDGRYLLSVSRDR- 594 (764)
T ss_pred eeEEEEEecCCCCE-Eeehh-hhCC------ccceEEEEEeccch--hhhheecccceEEEEEEECCCCcEEEEeecCc-
Confidence 34667888888884 44443 2221 13337888887322 23456777788899999999999999887443
Q ss_pred CceeEEEE
Q 004456 322 SQTRTWLV 329 (752)
Q Consensus 322 ~~~~l~~~ 329 (752)
.-.||..
T Consensus 595 -t~sl~~~ 601 (764)
T KOG1063|consen 595 -TVSLYEV 601 (764)
T ss_pred -eEEeeee
Confidence 2345554
No 308
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.91 E-value=0.00012 Score=72.46 Aligned_cols=291 Identities=15% Similarity=0.100 Sum_probs=136.2
Q ss_pred ceeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcce---eccCCC
Q 004456 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK---PLFESP 81 (752)
Q Consensus 5 ~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~---~lt~~~ 81 (752)
..+++++.+. ++ +.+.-......+...||||+.++.+.+.-......+...-|-++|.++=+.+ .|...+
T Consensus 17 ~rv~viD~d~----~k---~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~ 89 (342)
T PF06433_consen 17 SRVYVIDADS----GK---LLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKP 89 (342)
T ss_dssp EEEEEEETTT----TE---EEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-
T ss_pred ceEEEEECCC----Cc---EEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcc
Confidence 4566776544 33 3332222245668899999999876551100111122344667777764322 221100
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccc-cccchhhccCChhhhhhhhhh-cccEE
Q 004456 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNII-ISRMTDNLLKDEYDESLFDYY-TTAQL 159 (752)
Q Consensus 82 ~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~-~~~~i 159 (752)
..........+..|+||+++++..-..... -..-....++.. ...+..+.+.|+...+.|.-. +.+.+
T Consensus 90 R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S----------VtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl 159 (342)
T PF06433_consen 90 RAQVVPYKNMFALSADGKFLYVQNFTPATS----------VTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSL 159 (342)
T ss_dssp B--BS--GGGEEE-TTSSEEEEEEESSSEE----------EEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCE
T ss_pred hheecccccceEEccCCcEEEEEccCCCCe----------EEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCce
Confidence 000001124678999999998752110000 000000111111 111122233444433222211 33555
Q ss_pred EEEcc--CCCccc-cC---Cc---cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCC
Q 004456 160 VLGSL--DGTAKD-FG---TP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA 230 (752)
Q Consensus 160 ~~~~~--~G~~~~-l~---~~---~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 230 (752)
..+.+ +|+..+ .+ .. ..+..+.++.++.+++|.+..+ +++..++.+...+....-+..
T Consensus 160 ~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G-------------~v~~~dlsg~~~~~~~~~~~~ 226 (342)
T PF06433_consen 160 LTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEG-------------NVYSADLSGDSAKFGKPWSLL 226 (342)
T ss_dssp EEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTS-------------EEEEEEETTSSEEEEEEEESS
T ss_pred EEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCC-------------EEEEEeccCCcccccCccccc
Confidence 55555 674332 21 11 2334666777777788876664 788888887765443221110
Q ss_pred CCCCcccCCc-cccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecC
Q 004456 231 EDIPVCYNSV-REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDD 309 (752)
Q Consensus 231 ~~~~~~~~~~-~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spD 309 (752)
.... .-... +.|-.-+++++...+ ||+.-. .+.+.........||++|+ ++++...-......+.+++.|.|
T Consensus 227 t~~e-~~~~WrPGG~Q~~A~~~~~~r-lyvLMh--~g~~gsHKdpgteVWv~D~---~t~krv~Ri~l~~~~~Si~Vsqd 299 (342)
T PF06433_consen 227 TDAE-KADGWRPGGWQLIAYHAASGR-LYVLMH--QGGEGSHKDPGTEVWVYDL---KTHKRVARIPLEHPIDSIAVSQD 299 (342)
T ss_dssp -HHH-HHTTEEE-SSS-EEEETTTTE-EEEEEE--E--TT-TTS-EEEEEEEET---TTTEEEEEEEEEEEESEEEEESS
T ss_pred Cccc-cccCcCCcceeeeeeccccCe-EEEEec--CCCCCCccCCceEEEEEEC---CCCeEEEEEeCCCccceEEEccC
Confidence 0000 00011 122334777776666 665533 2222223445558999998 44333222333455668999999
Q ss_pred CceEEEeeecccCceeEEEEcCCCC
Q 004456 310 SLALVNETWYKTSQTRTWLVCPGSK 334 (752)
Q Consensus 310 g~~l~~~~~~~~~~~~l~~~~~~~~ 334 (752)
.+-++|+... ....|+++|..++
T Consensus 300 ~~P~L~~~~~--~~~~l~v~D~~tG 322 (342)
T PF06433_consen 300 DKPLLYALSA--GDGTLDVYDAATG 322 (342)
T ss_dssp SS-EEEEEET--TTTEEEEEETTT-
T ss_pred CCcEEEEEcC--CCCeEEEEeCcCC
Confidence 9988887533 2346999999985
No 309
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=97.90 E-value=0.00027 Score=68.80 Aligned_cols=151 Identities=15% Similarity=0.056 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-----ceeEEEEccCCCCCCCCcc-C----ccc
Q 004456 579 VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-----LFCCGIARSGSYNKTLTPF-G----FQT 648 (752)
Q Consensus 579 ~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~-----~~~~~v~~~~~~~~~~~~~-~----~~~ 648 (752)
.......+.+++.+|.++..+ .++-++||||||..++.++..+.. .+...|.+++.++...... . ...
T Consensus 82 ~~~qa~wl~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~~~~~~~~~ 159 (255)
T PF06028_consen 82 YKKQAKWLKKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMNDDQNQNDLN 159 (255)
T ss_dssp HHHHHHHHHHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC-TTTT-CS
T ss_pred HHHHHHHHHHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccccccccchhhhhc
Confidence 455678889999999998665 689999999999999999887522 4788888888776332111 0 000
Q ss_pred cccchhhhHHHHHhcChh--hhcCCCCCCEEEEEeC------CCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCC--CCc
Q 004456 649 EFRTLWEATNVYIEMSPI--THANKIKKPILIIHGE------VDDKVGLFPMQAERFFDALKGHGALSRLVLLPF--EHH 718 (752)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~--~~~~~~~~P~li~~G~------~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~H 718 (752)
..+ |-.....|...-.. .++++ ...+|.|.|. .|..|| ...+..+...++.....++-.++.| +.|
T Consensus 160 ~~g-p~~~~~~y~~l~~~~~~~~p~-~i~VLnI~G~~~~g~~sDG~V~--~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a~H 235 (255)
T PF06028_consen 160 KNG-PKSMTPMYQDLLKNRRKNFPK-NIQVLNIYGDLEDGSNSDGIVP--NASSLSLRYLLKNRAKSYQEKTVTGKDAQH 235 (255)
T ss_dssp TT--BSS--HHHHHHHHTHGGGSTT-T-EEEEEEEESBTTCSBTSSSB--HHHHCTHHHHCTTTSSEEEEEEEESGGGSC
T ss_pred ccC-CcccCHHHHHHHHHHHhhCCC-CeEEEEEecccCCCCCCCeEEe--HHHHHHHHHHhhcccCceEEEEEECCCCcc
Confidence 001 11112222221111 11221 4679999998 799999 8888888887777777788888876 468
Q ss_pred cCCccccHHHHHHHHHHHH
Q 004456 719 VYAARENVMHVIWETDRWL 737 (752)
Q Consensus 719 ~~~~~~~~~~~~~~~~~fl 737 (752)
.-. .+ ..++.+.|.+||
T Consensus 236 S~L-he-N~~V~~~I~~FL 252 (255)
T PF06028_consen 236 SQL-HE-NPQVDKLIIQFL 252 (255)
T ss_dssp CGG-GC-CHHHHHHHHHHH
T ss_pred ccC-CC-CHHHHHHHHHHh
Confidence 643 33 346677777776
No 310
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.00023 Score=79.44 Aligned_cols=260 Identities=13% Similarity=0.144 Sum_probs=141.4
Q ss_pred eeceeEecCCCC-eEEEeeccccccc--cccCcceEEEEEcccCcc--eeccCCCCccccccccceEEecCCcE---EEE
Q 004456 32 KINFVSWSPDGK-RIAFSVRVDEEDN--VSSCKLRVWIADAETGEA--KPLFESPDICLNAVFGSFVWVNNSTL---LIF 103 (752)
Q Consensus 32 ~~~~~~~SPDG~-~ia~~~~~~~~~~--~~~~~~~l~v~~~~~g~~--~~lt~~~~~~~~~~~~~~~wspdg~~---l~~ 103 (752)
+-...+|||+++ ++|-.....--+. ..+...+||-++....+. +++-.... ..-+..+.|++-|.. |+.
T Consensus 8 Rta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s---~~rF~kL~W~~~g~~~~GlIa 84 (1049)
T KOG0307|consen 8 RTATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQS---SNRFNKLAWGSYGSHSHGLIA 84 (1049)
T ss_pred ccceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccc---cccceeeeecccCCCccceee
Confidence 345578999996 3333221111111 124556788877766553 44422221 112557899988776 333
Q ss_pred EecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccC----C-Cc---cccCCc-
Q 004456 104 TIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD----G-TA---KDFGTP- 174 (752)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~----G-~~---~~l~~~- 174 (752)
... ..+.|-+++.+ + +. .+...+
T Consensus 85 GG~------------------------------------------------edG~I~ly~p~~~~~~~~~~~la~~~~h~ 116 (1049)
T KOG0307|consen 85 GGL------------------------------------------------EDGNIVLYDPASIIANASEEVLATKSKHT 116 (1049)
T ss_pred ccc------------------------------------------------cCCceEEecchhhccCcchHHHhhhcccC
Confidence 211 11566666661 3 22 223344
Q ss_pred cceeccccCCCCc-eEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCC
Q 004456 175 AVYTAVEPSPDQK-YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (752)
Q Consensus 175 ~~~~~~~~SpDGk-~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG 253 (752)
+.+..+.|+|.+. .|+-...+ ++|++||++.-+ ...+.. .. +....+..++|...=
T Consensus 117 G~V~gLDfN~~q~nlLASGa~~-------------geI~iWDlnn~~-tP~~~~--~~-------~~~~eI~~lsWNrkv 173 (1049)
T KOG0307|consen 117 GPVLGLDFNPFQGNLLASGADD-------------GEILIWDLNKPE-TPFTPG--SQ-------APPSEIKCLSWNRKV 173 (1049)
T ss_pred CceeeeeccccCCceeeccCCC-------------CcEEEeccCCcC-CCCCCC--CC-------CCcccceEeccchhh
Confidence 8889999999987 55544333 489999998521 111111 00 011235567776554
Q ss_pred CceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecc--cceeeeeeecCCce-EEEeeecccCceeEEEEc
Q 004456 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD--LRFRSVSWCDDSLA-LVNETWYKTSQTRTWLVC 330 (752)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~--~~~~~~~~spDg~~-l~~~~~~~~~~~~l~~~~ 330 (752)
..+|+-. ..+++..+||+. +....-.+.... .....++|.||+.. |+.+++++ +.-.|-.+|
T Consensus 174 qhILAS~------------s~sg~~~iWDlr--~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd-~~PviqlWD 238 (1049)
T KOG0307|consen 174 SHILASG------------SPSGRAVIWDLR--KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDD-SAPVIQLWD 238 (1049)
T ss_pred hHHhhcc------------CCCCCceecccc--CCCcccccccCCCccceeeeeeCCCCceeeeeecCCC-CCceeEeec
Confidence 4412222 245578889983 222233343332 34678999999754 55555444 444566666
Q ss_pred CCCCCccceecc-ccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCcee
Q 004456 331 PGSKDVAPRVLF-DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKE 408 (752)
Q Consensus 331 ~~~~~~~~~~l~-~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~ 408 (752)
+.-. ..+.++. -+.. |.-.+.|++.+..+++++. ...+++.|+.+|||+-
T Consensus 239 lR~a-ssP~k~~~~H~~-------GilslsWc~~D~~lllSsg--------------------kD~~ii~wN~~tgEvl 289 (1049)
T KOG0307|consen 239 LRFA-SSPLKILEGHQR-------GILSLSWCPQDPRLLLSSG--------------------KDNRIICWNPNTGEVL 289 (1049)
T ss_pred cccc-CCchhhhccccc-------ceeeeccCCCCchhhhccc--------------------CCCCeeEecCCCceEe
Confidence 5443 2233332 2222 2233779999977777763 2336999999998864
No 311
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=97.89 E-value=0.0019 Score=65.52 Aligned_cols=206 Identities=17% Similarity=0.157 Sum_probs=120.5
Q ss_pred CcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCC--CC--
Q 004456 492 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP--II-- 567 (752)
Q Consensus 492 g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~--~~-- 567 (752)
|..-...||+|... +.+.-+||++||-+.. -++.+....+...|.+.||+++++.-.+ ..
T Consensus 70 ~~~~flaL~~~~~~----~~~~G~vIilp~~g~~------------~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~ 133 (310)
T PF12048_consen 70 GEERFLALWRPANS----AKPQGAVIILPDWGEH------------PDWPGLIAPLRRELPDHGWATLSITLPDPAPPAS 133 (310)
T ss_pred CCEEEEEEEecccC----CCCceEEEEecCCCCC------------CCcHhHHHHHHHHhhhcCceEEEecCCCcccccC
Confidence 33555667777652 3347899999995321 1233333355668889999999922111 00
Q ss_pred -----------CCCCC--CC---------------CchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH
Q 004456 568 -----------GEGDK--LP---------------NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHL 619 (752)
Q Consensus 568 -----------g~g~~--~~---------------~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~ 619 (752)
.-+.. .. ...+...+..-+.+++.++.+++. .+|+|+||+.|+++++.+
T Consensus 134 p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~~---~~ivlIg~G~gA~~~~~~ 210 (310)
T PF12048_consen 134 PNRATEAEEVPSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQGG---KNIVLIGHGTGAGWAARY 210 (310)
T ss_pred CccCCCCCCCCCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcCC---ceEEEEEeChhHHHHHHH
Confidence 00000 00 012234556777788888888763 569999999999999999
Q ss_pred HHhCCC-ceeEEEEccCCCCCCCCccCccccccchhhhHHHHHhcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHH
Q 004456 620 LAHAPH-LFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFF 698 (752)
Q Consensus 620 ~~~~p~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~ 698 (752)
+...+. .+.+.|++++....... .......+.+++.|+|=|++.....+ ...+..-.
T Consensus 211 la~~~~~~~daLV~I~a~~p~~~~-------------------n~~l~~~la~l~iPvLDi~~~~~~~~---~~~a~~R~ 268 (310)
T PF12048_consen 211 LAEKPPPMPDALVLINAYWPQPDR-------------------NPALAEQLAQLKIPVLDIYSADNPAS---QQTAKQRK 268 (310)
T ss_pred HhcCCCcccCeEEEEeCCCCcchh-------------------hhhHHHHhhccCCCEEEEecCCChHH---HHHHHHHH
Confidence 998754 47899988874321100 01122345678899998887773221 22222222
Q ss_pred HHHHhC-CCcEEEEEeCCCCccCCccccHHHHHHHHHHHHHHH
Q 004456 699 DALKGH-GALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 740 (752)
Q Consensus 699 ~~l~~~-~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 740 (752)
.+.+.. ...++-+.+++..|... ......++.|..||.++
T Consensus 269 ~~a~r~~~~~YrQ~~L~~~~~~~~--~~~~~l~~rIrGWL~~~ 309 (310)
T PF12048_consen 269 QAAKRNKKPDYRQIQLPGLPDNPS--GWQEQLLRRIRGWLKRH 309 (310)
T ss_pred HHHHhccCCCceeEecCCCCCChh--hHHHHHHHHHHHHHHhh
Confidence 222222 23455556666555432 22233888999999875
No 312
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.88 E-value=0.002 Score=63.49 Aligned_cols=181 Identities=15% Similarity=0.056 Sum_probs=101.8
Q ss_pred cccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhh
Q 004456 69 AETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDE 148 (752)
Q Consensus 69 ~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 148 (752)
.+++...++...... ....+..+++|+||+.++|+... .
T Consensus 7 ~~~~~~~pv~g~~~~-~~~~~~s~AvS~dg~~~A~v~~~--~-------------------------------------- 45 (253)
T PF10647_consen 7 VSGGGVTPVPGALGE-GGYDVTSPAVSPDGSRVAAVSEG--D-------------------------------------- 45 (253)
T ss_pred ecCCceeECCCCcCc-CCccccceEECCCCCeEEEEEEc--C--------------------------------------
Confidence 345566666433221 11135688999999999998511 1
Q ss_pred hhhhhhcccEEEEEccCCCccccCCccceeccccCCCCceEEEEecccCccccccccCccccEEEE-e-cCCc-eeEEec
Q 004456 149 SLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVW-T-TDGK-LVRELC 225 (752)
Q Consensus 149 ~~~~~~~~~~i~~~~~~G~~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~-d-~~~~-~~~~l~ 225 (752)
....|+....++....+.....+..++|++||...++..... ...++ + .++. ....+.
T Consensus 46 ------~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~-------------~~~~~~~~~~g~~~~~~v~ 106 (253)
T PF10647_consen 46 ------GGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSG-------------GVRVVRDSASGTGEPVEVD 106 (253)
T ss_pred ------CCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCC-------------ceEEEEecCCCcceeEEec
Confidence 126899988877666665557888999999977666654332 22222 2 2222 122222
Q ss_pred CCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEE------e-ecc
Q 004456 226 DLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL------H-KLD 298 (752)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l------~-~~~ 298 (752)
...... .+.++.+||||++ ++++.... ...+|++..+.....+.+..+ . ...
T Consensus 107 ~~~~~~-----------~I~~l~vSpDG~R-vA~v~~~~---------~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~ 165 (253)
T PF10647_consen 107 WPGLRG-----------RITALRVSPDGTR-VAVVVEDG---------GGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL 165 (253)
T ss_pred ccccCC-----------ceEEEEECCCCcE-EEEEEecC---------CCCeEEEEEEEeCCCCCcceeccceEeccccc
Confidence 221110 3778999999999 77775332 223566544321122222222 2 223
Q ss_pred cceeeeeeecCCceEEEeeecccCceeEE-EEcCCC
Q 004456 299 LRFRSVSWCDDSLALVNETWYKTSQTRTW-LVCPGS 333 (752)
Q Consensus 299 ~~~~~~~~spDg~~l~~~~~~~~~~~~l~-~~~~~~ 333 (752)
..+..++|++++..++........ .+ .+...+
T Consensus 166 ~~v~~v~W~~~~~L~V~~~~~~~~---~~~~v~~dG 198 (253)
T PF10647_consen 166 SDVTDVAWSDDSTLVVLGRSAGGP---VVRLVSVDG 198 (253)
T ss_pred CcceeeeecCCCEEEEEeCCCCCc---eeEEEEccC
Confidence 467789999999866665433322 22 366665
No 313
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=97.86 E-value=0.0017 Score=64.04 Aligned_cols=161 Identities=14% Similarity=0.064 Sum_probs=90.7
Q ss_pred cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCC
Q 004456 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (752)
Q Consensus 175 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~ 254 (752)
..+..+.|.|-..-++.++... +.+.+||+.+++...-...+. .+.+++|+-||.
T Consensus 132 rrVg~V~wHPtA~NVLlsag~D------------n~v~iWnv~tgeali~l~hpd-------------~i~S~sfn~dGs 186 (472)
T KOG0303|consen 132 RRVGLVQWHPTAPNVLLSAGSD------------NTVSIWNVGTGEALITLDHPD-------------MVYSMSFNRDGS 186 (472)
T ss_pred eeEEEEeecccchhhHhhccCC------------ceEEEEeccCCceeeecCCCC-------------eEEEEEeccCCc
Confidence 4556888999988887776543 589999999886433222333 377899999999
Q ss_pred ceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEe--ecccceeeeeeecCCceEEEeeecccCceeEEEEcCC
Q 004456 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (752)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~--~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~ 332 (752)
. |+-++ ...+|.++|.. .+++..-. -.........|-.+|+ |+.+....-.+..+-+++.+
T Consensus 187 ~-l~Ttc------------kDKkvRv~dpr---~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~ 249 (472)
T KOG0303|consen 187 L-LCTTC------------KDKKVRVIDPR---RGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPN 249 (472)
T ss_pred e-eeeec------------ccceeEEEcCC---CCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcc
Confidence 6 55443 33368888762 22222211 1222344566888998 44443333234456666766
Q ss_pred CCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEc
Q 004456 333 SKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLN 384 (752)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 384 (752)
.- .++..+.+..... ..-.|. |.+|.+.|+... +++.+-.|..+.
T Consensus 250 nl-~eP~~~~elDtSn---Gvl~PF--yD~dt~ivYl~G-KGD~~IRYyEit 294 (472)
T KOG0303|consen 250 NL-EEPIALQELDTSN---GVLLPF--YDPDTSIVYLCG-KGDSSIRYFEIT 294 (472)
T ss_pred cc-cCcceeEEeccCC---ceEEee--ecCCCCEEEEEe-cCCcceEEEEec
Confidence 53 3444444333322 112344 688876555544 433333343333
No 314
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.85 E-value=0.023 Score=60.42 Aligned_cols=223 Identities=13% Similarity=0.096 Sum_probs=121.9
Q ss_pred eeEEeecCCCCCCC--CceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCc
Q 004456 6 GIGIHRLLPDDSLG--PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (752)
Q Consensus 6 ~i~~~~~~~~~~~g--~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~ 83 (752)
.|.++++.. + ..+.|++ ++.-.+...+|++.|+.+-. ...+.|--+|+.+++.+.--...+.
T Consensus 48 ~IEiwN~~~----~w~~~~vi~g-~~drsIE~L~W~e~~RLFS~-----------g~sg~i~EwDl~~lk~~~~~d~~gg 111 (691)
T KOG2048|consen 48 NIEIWNLSN----NWFLEPVIHG-PEDRSIESLAWAEGGRLFSS-----------GLSGSITEWDLHTLKQKYNIDSNGG 111 (691)
T ss_pred cEEEEccCC----CceeeEEEec-CCCCceeeEEEccCCeEEee-----------cCCceEEEEecccCceeEEecCCCc
Confidence 455666655 3 4445554 44447899999966654433 4557888889888876655322211
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEc
Q 004456 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (752)
Q Consensus 84 ~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~ 163 (752)
.+-+++-+|-+..++....+ +.++.++
T Consensus 112 ----~IWsiai~p~~~~l~Igcdd-------------------------------------------------Gvl~~~s 138 (691)
T KOG2048|consen 112 ----AIWSIAINPENTILAIGCDD-------------------------------------------------GVLYDFS 138 (691)
T ss_pred ----ceeEEEeCCccceEEeecCC-------------------------------------------------ceEEEEe
Confidence 12233334666666554221 3445444
Q ss_pred c-CC--CccccCCc--cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccC
Q 004456 164 L-DG--TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (752)
Q Consensus 164 ~-~G--~~~~l~~~--~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 238 (752)
. .+ +..+.... +.+-+++|+|+|.+|+-.+.+. -|.+||+..++...+........
T Consensus 139 ~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg-------------~Iriwd~~~~~t~~~~~~~~d~l------ 199 (691)
T KOG2048|consen 139 IGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDG-------------VIRIWDVKSGQTLHIITMQLDRL------ 199 (691)
T ss_pred cCCceEEEEeecccccceEEEEEecCCccEEEecccCc-------------eEEEEEcCCCceEEEeeeccccc------
Confidence 4 23 22233222 6788999999999998887663 68999998776544322211100
Q ss_pred CccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeee
Q 004456 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETW 318 (752)
Q Consensus 239 ~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~ 318 (752)
..+..-+.|| +.|.+.. .- ...+..+.+-.||.. .+...+...-.+..+..++.++++..++.+.
T Consensus 200 --~k~~~~iVWS------v~~Lrd~--tI--~sgDS~G~V~FWd~~--~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG- 264 (691)
T KOG2048|consen 200 --SKREPTIVWS------VLFLRDS--TI--ASGDSAGTVTFWDSI--FGTLIQSHSCHDADVLALAVADNEDRVFSAG- 264 (691)
T ss_pred --ccCCceEEEE------EEEeecC--cE--EEecCCceEEEEccc--CcchhhhhhhhhcceeEEEEcCCCCeEEEcc-
Confidence 0001134555 4444211 00 011245567777763 2223333444566677777788877776655
Q ss_pred cccCceeEEEEcCCCC
Q 004456 319 YKTSQTRTWLVCPGSK 334 (752)
Q Consensus 319 ~~~~~~~l~~~~~~~~ 334 (752)
....|..+...++
T Consensus 265 ---vd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 265 ---VDPKIIQYSLTTN 277 (691)
T ss_pred ---CCCceEEEEecCC
Confidence 2223555555543
No 315
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.85 E-value=0.029 Score=65.70 Aligned_cols=111 Identities=14% Similarity=0.090 Sum_probs=64.9
Q ss_pred cccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEe-ecccceeeeeeecCCceEEEeeeccc
Q 004456 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-KLDLRFRSVSWCDDSLALVNETWYKT 321 (752)
Q Consensus 243 ~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~-~~~~~~~~~~~spDg~~l~~~~~~~~ 321 (752)
+.-.++|..||++ ++........+ .+-.+.+++. +| ...... ..++-...++|.|.|..|+.... ..
T Consensus 211 ~~~~ISWRGDG~y-FAVss~~~~~~------~~R~iRVy~R---eG-~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~ 278 (928)
T PF04762_consen 211 GRVRISWRGDGEY-FAVSSVEPETG------SRRVIRVYSR---EG-ELQSTSEPVDGLEGALSWRPSGNLIASSQR-LP 278 (928)
T ss_pred CceEEEECCCCcE-EEEEEEEcCCC------ceeEEEEECC---Cc-eEEeccccCCCccCCccCCCCCCEEEEEEE-cC
Confidence 4456999999997 55554321111 1336777776 43 333322 33344567899999998888774 33
Q ss_pred CceeEEEEcCCCCCccceeccc-cccccccCCCCCCceeeCCCCCeEEEee
Q 004456 322 SQTRTWLVCPGSKDVAPRVLFD-RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (752)
Q Consensus 322 ~~~~l~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~p~~~~s~dg~~l~~~~ 371 (752)
+..+|..+.-+|-+-....+.. .... ..-.+.|++|+..||+..
T Consensus 279 ~~~~VvFfErNGLrhgeF~l~~~~~~~------~v~~l~Wn~ds~iLAv~~ 323 (928)
T PF04762_consen 279 DRHDVVFFERNGLRHGEFTLRFDPEEE------KVIELAWNSDSEILAVWL 323 (928)
T ss_pred CCcEEEEEecCCcEeeeEecCCCCCCc------eeeEEEECCCCCEEEEEe
Confidence 5567777776663111111211 1111 122378999999999976
No 316
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.82 E-value=0.0035 Score=74.62 Aligned_cols=127 Identities=12% Similarity=0.076 Sum_probs=73.0
Q ss_pred ceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCC-CCCCcccC--------Cccccccc
Q 004456 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA-EDIPVCYN--------SVREGMRS 246 (752)
Q Consensus 176 ~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~-~~~~~~~~--------~~~~~~~~ 246 (752)
....++++|||++|++....+ +.|.++|++++..+.+...... ......+. ..-..+..
T Consensus 741 ~P~GIavspdG~~LYVADs~n------------~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 741 QPSGISLSPDLKELYIADSES------------SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CccEEEEeCCCCEEEEEECCC------------CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 455789999999998875543 4899999886654433211000 00000000 01123567
Q ss_pred eeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecc--------------cceeeeeeecCCce
Q 004456 247 ISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD--------------LRFRSVSWCDDSLA 312 (752)
Q Consensus 247 ~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~--------------~~~~~~~~spDg~~ 312 (752)
+++++||+ ||++.. .+..|.++|. +++....+.... .....+++++||+
T Consensus 809 vavd~dG~--LYVADs-----------~N~rIrviD~---~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~- 871 (1057)
T PLN02919 809 VLCAKDGQ--IYVADS-----------YNHKIKKLDP---ATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR- 871 (1057)
T ss_pred eeEeCCCc--EEEEEC-----------CCCEEEEEEC---CCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-
Confidence 89999997 666642 3447777777 444444332111 1234578999997
Q ss_pred EEEeeecccCceeEEEEcCCCC
Q 004456 313 LVNETWYKTSQTRTWLVCPGSK 334 (752)
Q Consensus 313 l~~~~~~~~~~~~l~~~~~~~~ 334 (752)
++++ +..++.|.++++.++
T Consensus 872 lyVa---Dt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 872 LFVA---DTNNSLIRYLDLNKG 890 (1057)
T ss_pred EEEE---ECCCCEEEEEECCCC
Confidence 4332 224457899998874
No 317
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.81 E-value=0.00032 Score=68.32 Aligned_cols=229 Identities=14% Similarity=0.101 Sum_probs=135.4
Q ss_pred ceeEEeecCCCCCCCCc-eeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccC-c-ceeccCCC
Q 004456 5 TGIGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG-E-AKPLFESP 81 (752)
Q Consensus 5 ~~i~~~~~~~~~~~g~~-~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g-~-~~~lt~~~ 81 (752)
..|.+.+... |+. +-+.+... .+...+|+.-||+||-.+. +-. +.+++.++- + .+.+..+.
T Consensus 130 ~tikv~D~~t----g~~e~~LrGHt~--sv~di~~~a~Gk~l~tcSs--------Dl~--~~LWd~~~~~~c~ks~~gh~ 193 (406)
T KOG0295|consen 130 ATIKVFDTET----GELERSLRGHTD--SVFDISFDASGKYLATCSS--------DLS--AKLWDFDTFFRCIKSLIGHE 193 (406)
T ss_pred ceEEEEEccc----hhhhhhhhcccc--ceeEEEEecCccEEEecCC--------ccc--hhheeHHHHHHHHHHhcCcc
Confidence 3455555544 432 33343333 4888999999999998753 222 444454442 2 33333233
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEE
Q 004456 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (752)
Q Consensus 82 ~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~ 161 (752)
. ++..+.+-|-|.+|+-.+. ...|+.
T Consensus 194 h-----~vS~V~f~P~gd~ilS~sr-------------------------------------------------D~tik~ 219 (406)
T KOG0295|consen 194 H-----GVSSVFFLPLGDHILSCSR-------------------------------------------------DNTIKA 219 (406)
T ss_pred c-----ceeeEEEEecCCeeeeccc-------------------------------------------------ccceeE
Confidence 2 5778889999988875532 146788
Q ss_pred Ecc-CC-CccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccC
Q 004456 162 GSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (752)
Q Consensus 162 ~~~-~G-~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 238 (752)
++. +| ....+..+ ..+..+..+.||..++--+.+. .+.+|-+.+++.+.+....- .|
T Consensus 220 We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dq-------------tl~vW~~~t~~~k~~lR~hE---h~---- 279 (406)
T KOG0295|consen 220 WECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQ-------------TLRVWVVATKQCKAELREHE---HP---- 279 (406)
T ss_pred EecccceeEEeccCchHhEEEEEecCCeeEEEecCCCc-------------eEEEEEeccchhhhhhhccc---cc----
Confidence 888 77 66677766 8999999999998888766553 78888888775443322110 01
Q ss_pred CccccccceeeeeCCCceEE-EEEeccCCCCc-cccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEe
Q 004456 239 SVREGMRSISWRADKPSTLY-WVEAQDRGDAN-VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNE 316 (752)
Q Consensus 239 ~~~~~~~~~~wspDG~~~l~-~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~ 316 (752)
+.-++|.|...+.=. ......++.+. ...+....|-+||+. .+...-.|......++.++|+|-||+|+..
T Consensus 280 -----vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~--tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sc 352 (406)
T KOG0295|consen 280 -----VECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS--TGMCLFTLVGHDNWVRGVAFSPGGKYILSC 352 (406)
T ss_pred -----eEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc--CCeEEEEEecccceeeeeEEcCCCeEEEEE
Confidence 233556555432000 01000111111 112233467788882 222233344566678999999999999988
Q ss_pred eecccCceeEEEEcCCCC
Q 004456 317 TWYKTSQTRTWLVCPGSK 334 (752)
Q Consensus 317 ~~~~~~~~~l~~~~~~~~ 334 (752)
+.+ ..|.++|++..
T Consensus 353 aDD----ktlrvwdl~~~ 366 (406)
T KOG0295|consen 353 ADD----KTLRVWDLKNL 366 (406)
T ss_pred ecC----CcEEEEEeccc
Confidence 733 34777777764
No 318
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.0003 Score=69.99 Aligned_cols=200 Identities=12% Similarity=0.036 Sum_probs=108.1
Q ss_pred eceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 004456 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (752)
Q Consensus 33 ~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~ 112 (752)
..-.++++||..||-.. -+..|.|++...-. +.+ ........+.++.|||||+.|++.+.
T Consensus 147 ~k~vaf~~~gs~latgg----------~dg~lRv~~~Ps~~-t~l---~e~~~~~eV~DL~FS~dgk~lasig~------ 206 (398)
T KOG0771|consen 147 QKVVAFNGDGSKLATGG----------TDGTLRVWEWPSML-TIL---EEIAHHAEVKDLDFSPDGKFLASIGA------ 206 (398)
T ss_pred ceEEEEcCCCCEeeecc----------ccceEEEEecCcch-hhh---hhHhhcCccccceeCCCCcEEEEecC------
Confidence 35578999999999853 23455565522211 111 11111225789999999999998732
Q ss_pred CCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CC-CccccCCc---cceeccccCCCC-
Q 004456 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP---AVYTAVEPSPDQ- 186 (752)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G-~~~~l~~~---~~~~~~~~SpDG- 186 (752)
....+|++ +| ...++++. ..+..+.|+-|+
T Consensus 207 --------------------------------------------d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~ 242 (398)
T KOG0771|consen 207 --------------------------------------------DSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNA 242 (398)
T ss_pred --------------------------------------------CceEEEEeccCchhhhcCCcccchhhhhceecccCC
Confidence 24566677 77 55555533 677789999888
Q ss_pred --ceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEecc
Q 004456 187 --KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (752)
Q Consensus 187 --k~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~ 264 (752)
...++......... -..++.+|+-+ .-.+.-.. .....++..+..|+||+. ++.-.
T Consensus 243 ~~~l~laa~~~~~~~v------~~~~~~~w~~~-~~l~~~~~-----------~~~~~siSsl~VS~dGkf-~AlGT--- 300 (398)
T KOG0771|consen 243 QETLRLAASQFPGGGV------RLCDISLWSGS-NFLRLRKK-----------IKRFKSISSLAVSDDGKF-LALGT--- 300 (398)
T ss_pred CceEEEEEecCCCCce------eEEEeeeeccc-cccchhhh-----------hhccCcceeEEEcCCCcE-EEEec---
Confidence 33333322211000 00233333322 10000000 011123678999999996 55553
Q ss_pred CCCCccccCccceEEeccCCCCCCCCCeEEee--cccceeeeeeecCCceEEEeeecccCceeEEEEcCC
Q 004456 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (752)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~ 332 (752)
..+.+.++++ ..-+...+.. ....+..+.|+||.+.++-.+. + .+..|..+..+
T Consensus 301 ---------~dGsVai~~~---~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs-~-~~~~v~~l~vd 356 (398)
T KOG0771|consen 301 ---------MDGSVAIYDA---KSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS-D-NEAAVTKLAVD 356 (398)
T ss_pred ---------cCCcEEEEEe---ceeeeeEeehhhheeeeeeEEEcCCcCccccccc-C-CceeEEEEeec
Confidence 2335566655 2222222222 2345788999999998887542 2 33456565553
No 319
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=97.81 E-value=0.00057 Score=67.25 Aligned_cols=64 Identities=16% Similarity=0.092 Sum_probs=58.7
Q ss_pred CCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHH
Q 004456 672 IKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 737 (752)
Q Consensus 672 ~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl 737 (752)
..+|-|++.++.|.+++ .+..++..+..++.|.+++.+.+++..|.-.....++.+.+.+.+|+
T Consensus 177 ~~~p~lylYS~~D~l~~--~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 177 SRCPRLYLYSKADPLIP--WRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred CCCCeEEecCCCCcCcC--HHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 45899999999999999 99999999999999999999999999999888888899999888874
No 320
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.80 E-value=0.00094 Score=71.14 Aligned_cols=183 Identities=9% Similarity=0.074 Sum_probs=107.6
Q ss_pred cEEEEEcc-CCCc-cccCCc---cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCC
Q 004456 157 AQLVLGSL-DGTA-KDFGTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (752)
Q Consensus 157 ~~i~~~~~-~G~~-~~l~~~---~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 231 (752)
..|..+|+ +|.. -+.... ..+..++.+||++.|++..... -+.+|.+.++...+......
T Consensus 40 d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~-------------llrv~~L~tgk~irswKa~H-- 104 (775)
T KOG0319|consen 40 DRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQ-------------LLRVWSLPTGKLIRSWKAIH-- 104 (775)
T ss_pred ceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccc-------------eEEEEEcccchHhHhHhhcc--
Confidence 45777777 6643 222222 5677999999999988875552 67788888775444332211
Q ss_pred CCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCC-CeEEeecccceeeeeeecCC
Q 004456 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILHKLDLRFRSVSWCDDS 310 (752)
Q Consensus 232 ~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~spDg 310 (752)
..| +--++|+|-|. |+-+. .-.+.+.+||. +.+. ...+-...+.+..+.|.|+-
T Consensus 105 e~P---------vi~ma~~~~g~--LlAtg-----------gaD~~v~VWdi---~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 105 EAP---------VITMAFDPTGT--LLATG-----------GADGRVKVWDI---KNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred CCC---------eEEEEEcCCCc--eEEec-----------cccceEEEEEe---eCCEEEEEecCCCceEEEEEeCCcc
Confidence 122 45689999984 33332 13347888888 3332 33344557788889999986
Q ss_pred ce-EEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCC
Q 004456 311 LA-LVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFT 389 (752)
Q Consensus 311 ~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~ 389 (752)
++ +++... ....++.+|+.+.... ..+....... .-.+.+++|+..++....+.
T Consensus 160 ~~~lL~sg~---~D~~v~vwnl~~~~tc-l~~~~~H~S~------vtsL~~~~d~~~~ls~~RDk--------------- 214 (775)
T KOG0319|consen 160 NRWLLASGA---TDGTVRVWNLNDKRTC-LHTMILHKSA------VTSLAFSEDSLELLSVGRDK--------------- 214 (775)
T ss_pred chhheeecC---CCceEEEEEcccCchH-HHHHHhhhhh------eeeeeeccCCceEEEeccCc---------------
Confidence 55 444332 3345888887754211 1111111111 11266899998887776332
Q ss_pred CCCCCCeeEEEecCCCceeEE
Q 004456 390 PEGNIPFLDLFDINTGSKERI 410 (752)
Q Consensus 390 ~~~~~~~l~~~d~~~g~~~~l 410 (752)
-+++||+.+-+..++
T Consensus 215 ------vi~vwd~~~~~~l~~ 229 (775)
T KOG0319|consen 215 ------VIIVWDLVQYKKLKT 229 (775)
T ss_pred ------EEEEeehhhhhhhhe
Confidence 488899865444333
No 321
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=97.77 E-value=0.0012 Score=67.19 Aligned_cols=136 Identities=20% Similarity=0.168 Sum_probs=91.6
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCC--CCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCc-cCcc------
Q 004456 577 RFVEQLVSSAEAAVEEVVRRGVAD--PSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTP-FGFQ------ 647 (752)
Q Consensus 577 ~~~~~~~~d~~~~~~~l~~~~~~d--~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~-~~~~------ 647 (752)
+++=..+.|+..|+.+++..-..- .-++.++|+|+||++|..++--+|-.|.+++--++...+.+.. ++..
T Consensus 157 N~GIMqAiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y 236 (403)
T PF11144_consen 157 NFGIMQAIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKY 236 (403)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCcccc
Confidence 344556789999999998873222 2489999999999999999999999999999877654321100 1100
Q ss_pred ---------------ccccchhhh---------HHHH--Hhc---ChhhhcCCC--CCCEEEEEeCCCCCCCCCHHHHHH
Q 004456 648 ---------------TEFRTLWEA---------TNVY--IEM---SPITHANKI--KKPILIIHGEVDDKVGLFPMQAER 696 (752)
Q Consensus 648 ---------------~~~~~~~~~---------~~~~--~~~---~~~~~~~~~--~~P~li~~G~~D~~v~~~~~~~~~ 696 (752)
....+.|+. .+.+ +.. ..+.-.++. ++-....|+..|..+| ..+-.+
T Consensus 237 ~~~~~~~~~~~~~i~~~~Kt~Wt~n~~S~~~Fs~~~~~IR~iLn~~HL~iqs~~n~~~~yvsYHs~~D~~~p--~~~K~~ 314 (403)
T PF11144_consen 237 ICSGEFFNFKNIRIYCFDKTFWTRNKNSPYYFSKARYIIRSILNPDHLKIQSNYNKKIIYVSYHSIKDDLAP--AEDKEE 314 (403)
T ss_pred cccccccccCCEEEEEEeccccccCCCCccccChHHHHHHHhcChHHHHHHHhcccceEEEEEeccCCCCCC--HHHHHH
Confidence 011344542 1111 111 111111222 3456688999999999 999999
Q ss_pred HHHHHHhCCCcEEEEEeC
Q 004456 697 FFDALKGHGALSRLVLLP 714 (752)
Q Consensus 697 ~~~~l~~~~~~~~~~~~~ 714 (752)
+++.+.+.|-+++++.+.
T Consensus 315 l~~~l~~lgfda~l~lIk 332 (403)
T PF11144_consen 315 LYEILKNLGFDATLHLIK 332 (403)
T ss_pred HHHHHHHcCCCeEEEEec
Confidence 999999999999999883
No 322
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.00025 Score=70.56 Aligned_cols=148 Identities=15% Similarity=0.116 Sum_probs=88.2
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCc-ceeccCCCCccccccccceEEecCC---cEEEEEecC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNS---TLLIFTIPS 107 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspdg---~~l~~~~~~ 107 (752)
.+....||||||.||++.. ....|+++.+|- ...+|.... +-.+..+.|+-|+ .+.+++...
T Consensus 188 eV~DL~FS~dgk~lasig~-----------d~~~VW~~~~g~~~a~~t~~~k---~~~~~~cRF~~d~~~~~l~laa~~~ 253 (398)
T KOG0771|consen 188 EVKDLDFSPDGKFLASIGA-----------DSARVWSVNTGAALARKTPFSK---DEMFSSCRFSVDNAQETLRLAASQF 253 (398)
T ss_pred ccccceeCCCCcEEEEecC-----------CceEEEEeccCchhhhcCCccc---chhhhhceecccCCCceEEEEEecC
Confidence 6888999999999999753 266666777774 333442222 1135688898776 333333221
Q ss_pred CCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccC--CCccccCCc-cceeccccCC
Q 004456 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD--GTAKDFGTP-AVYTAVEPSP 184 (752)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~--G~~~~l~~~-~~~~~~~~Sp 184 (752)
..+.. ....+.+++-+ +..++.... ..+++++.|+
T Consensus 254 ~~~~v------------------------------------------~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~ 291 (398)
T KOG0771|consen 254 PGGGV------------------------------------------RLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD 291 (398)
T ss_pred CCCce------------------------------------------eEEEeeeeccccccchhhhhhccCcceeEEEcC
Confidence 11100 00122222221 133333333 6899999999
Q ss_pred CCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEE
Q 004456 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (752)
Q Consensus 185 DGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~ 260 (752)
|||+++....++ .+-+++...-+..++...... .-+.++.|+||.++ +.-+
T Consensus 292 dGkf~AlGT~dG-------------sVai~~~~~lq~~~~vk~aH~-----------~~VT~ltF~Pdsr~-~~sv 342 (398)
T KOG0771|consen 292 DGKFLALGTMDG-------------SVAIYDAKSLQRLQYVKEAHL-----------GFVTGLTFSPDSRY-LASV 342 (398)
T ss_pred CCcEEEEeccCC-------------cEEEEEeceeeeeEeehhhhe-----------eeeeeEEEcCCcCc-cccc
Confidence 999999998864 677787776655444332211 22668999999997 5544
No 323
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=97.77 E-value=0.028 Score=54.08 Aligned_cols=189 Identities=17% Similarity=0.176 Sum_probs=116.8
Q ss_pred CceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCc
Q 004456 20 PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNST 99 (752)
Q Consensus 20 ~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~ 99 (752)
...+|...|+. .++..+|||.+..|+..++ + +.|.++++...+.++...... .+..+.|.++.+
T Consensus 4 ~~~~l~npP~d-~IS~v~f~~~~~~LLvssW--------D--gslrlYdv~~~~l~~~~~~~~-----plL~c~F~d~~~ 67 (323)
T KOG1036|consen 4 NEFELENPPED-GISSVKFSPSSSDLLVSSW--------D--GSLRLYDVPANSLKLKFKHGA-----PLLDCAFADEST 67 (323)
T ss_pred cccccCCCChh-ceeeEEEcCcCCcEEEEec--------c--CcEEEEeccchhhhhheecCC-----ceeeeeccCCce
Confidence 34556655554 5999999999999999876 2 567777777777666654443 355778887655
Q ss_pred EEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCccccCCc-cce
Q 004456 100 LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVY 177 (752)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~~l~~~-~~~ 177 (752)
+++.. -.++|.++|+ .|+..++..+ ..+
T Consensus 68 -~~~G~-------------------------------------------------~dg~vr~~Dln~~~~~~igth~~~i 97 (323)
T KOG1036|consen 68 -IVTGG-------------------------------------------------LDGQVRRYDLNTGNEDQIGTHDEGI 97 (323)
T ss_pred -EEEec-------------------------------------------------cCceEEEEEecCCcceeeccCCCce
Confidence 55431 1268999999 5577777666 788
Q ss_pred eccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceE
Q 004456 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTL 257 (752)
Q Consensus 178 ~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l 257 (752)
..+..++--..|+-.+.++ .|.+||...+....-.+... .-++.+-.|.. |
T Consensus 98 ~ci~~~~~~~~vIsgsWD~-------------~ik~wD~R~~~~~~~~d~~k---------------kVy~~~v~g~~-L 148 (323)
T KOG1036|consen 98 RCIEYSYEVGCVISGSWDK-------------TIKFWDPRNKVVVGTFDQGK---------------KVYCMDVSGNR-L 148 (323)
T ss_pred EEEEeeccCCeEEEcccCc-------------cEEEEeccccccccccccCc---------------eEEEEeccCCE-E
Confidence 8888887666666665553 78899987532211111111 12344444555 5
Q ss_pred EEEEeccCCCCccccCccceEEeccCCCCCCCCCeE--EeecccceeeeeeecCCceEEEee
Q 004456 258 YWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI--LHKLDLRFRSVSWCDDSLALVNET 317 (752)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--l~~~~~~~~~~~~spDg~~l~~~~ 317 (752)
++.. ....+.++|+... ..+.+ -.......+.++.-|.+..++.++
T Consensus 149 vVg~------------~~r~v~iyDLRn~--~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS 196 (323)
T KOG1036|consen 149 VVGT------------SDRKVLIYDLRNL--DEPFQRRESSLKYQTRCVALVPNGEGYVVSS 196 (323)
T ss_pred EEee------------cCceEEEEEcccc--cchhhhccccceeEEEEEEEecCCCceEEEe
Confidence 4422 1226777777422 12221 223445567788888777777766
No 324
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.76 E-value=0.0019 Score=61.86 Aligned_cols=201 Identities=12% Similarity=0.059 Sum_probs=113.8
Q ss_pred ceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCc
Q 004456 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (752)
Q Consensus 176 ~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~ 255 (752)
....+.||+-|.+|++...++ .+.+||..+....++.... . ..+..+.||+||+.
T Consensus 25 ~a~~~~Fs~~G~~lAvGc~nG-------------~vvI~D~~T~~iar~lsaH---~---------~pi~sl~WS~dgr~ 79 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGCANG-------------RVVIYDFDTFRIARMLSAH---V---------RPITSLCWSRDGRK 79 (405)
T ss_pred ccceEEeccCcceeeeeccCC-------------cEEEEEccccchhhhhhcc---c---------cceeEEEecCCCCE
Confidence 366789999999999987664 7999999877543322221 1 12668999999997
Q ss_pred eEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCC
Q 004456 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKD 335 (752)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~ 335 (752)
|+-.+ ....+-.||+. + +.+..-...+..+....|.|-.+..+....-+.. -+++++..
T Consensus 80 -LltsS------------~D~si~lwDl~--~-gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~s---p~vi~~s~-- 138 (405)
T KOG1273|consen 80 -LLTSS------------RDWSIKLWDLL--K-GSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEES---PVVIDFSD-- 138 (405)
T ss_pred -eeeec------------CCceeEEEecc--C-CCceeEEEccCccceeeeccccCCeEEEEEecCC---cEEEEecC--
Confidence 54443 23367788883 3 4444445566777778898865444443322211 23444443
Q ss_pred ccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeeccc
Q 004456 336 VAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNR 415 (752)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 415 (752)
.....|....-.+......... +.+-|+||+....++ .|.++|..|-+...-.....
T Consensus 139 ~~h~~Lp~d~d~dln~sas~~~--fdr~g~yIitGtsKG---------------------kllv~~a~t~e~vas~rits 195 (405)
T KOG1273|consen 139 PKHSVLPKDDDGDLNSSASHGV--FDRRGKYIITGTSKG---------------------KLLVYDAETLECVASFRITS 195 (405)
T ss_pred CceeeccCCCcccccccccccc--ccCCCCEEEEecCcc---------------------eEEEEecchheeeeeeeech
Confidence 2334443322222111111112 578888888776332 47788877765433221111
Q ss_pred hhhhhceeeeecCCcceecccCCCEEEEEEecCCCCcEEEEEEC
Q 004456 416 EKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSW 459 (752)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~ 459 (752)
.......-++..|+.+++..++.. |+.++.
T Consensus 196 ----------~~~IK~I~~s~~g~~liiNtsDRv----IR~ye~ 225 (405)
T KOG1273|consen 196 ----------VQAIKQIIVSRKGRFLIINTSDRV----IRTYEI 225 (405)
T ss_pred ----------heeeeEEEEeccCcEEEEecCCce----EEEEeh
Confidence 011122457778888887654432 555553
No 325
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.76 E-value=0.0027 Score=68.38 Aligned_cols=54 Identities=17% Similarity=0.029 Sum_probs=34.1
Q ss_pred ecCCCCeEEEeeccccccccccCcceEEEEEcccCcc-eeccCCCCccccccccceEEecCCcEEEEEec
Q 004456 38 WSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (752)
Q Consensus 38 ~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~-~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~ 106 (752)
++|||+.|.-. .++.+-+-++|.++-+. .++.- +. ......++|||+++++++.
T Consensus 200 lpnDGk~l~~~---------~ey~~~vSvID~etmeV~~qV~V-dg-----npd~v~~spdGk~afvTsy 254 (635)
T PRK02888 200 LPNDGKDLDDP---------KKYRSLFTAVDAETMEVAWQVMV-DG-----NLDNVDTDYDGKYAFSTCY 254 (635)
T ss_pred cCCCCCEeecc---------cceeEEEEEEECccceEEEEEEe-CC-----CcccceECCCCCEEEEecc
Confidence 67777765221 25567777888887543 33321 22 2346699999999988754
No 326
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.75 E-value=0.0056 Score=66.08 Aligned_cols=134 Identities=7% Similarity=-0.050 Sum_probs=75.3
Q ss_pred cEEEEEccCC--CccccCCccceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCC
Q 004456 157 AQLVLGSLDG--TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (752)
Q Consensus 157 ~~i~~~~~~G--~~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (752)
+.+-.+|.+. ...++...+......++|||+++++++.+.+. ...+...+..........+...
T Consensus 215 ~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~---------G~tl~em~a~e~d~~vvfni~~----- 280 (635)
T PRK02888 215 SLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEE---------GVTLAEMMAAERDWVVVFNIAR----- 280 (635)
T ss_pred EEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCccc---------CcceeeeccccCceEEEEchHH-----
Confidence 4566677633 23344444677789999999999999754321 1233333333222222111110
Q ss_pred cccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCC--CCCCCeEEeecccceeeeeeecCCce
Q 004456 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPA--EGEKPEILHKLDLRFRSVSWCDDSLA 312 (752)
Q Consensus 235 ~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~l~~~~~~~~~~~~spDg~~ 312 (752)
--.+.+||++ .+ +. .+.+-++|.... .+...........+...+.+||||++
T Consensus 281 -----------iea~vkdGK~-~~-V~-------------gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGky 334 (635)
T PRK02888 281 -----------IEEAVKAGKF-KT-IG-------------GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKY 334 (635)
T ss_pred -----------HHHhhhCCCE-EE-EC-------------CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCE
Confidence 1256678885 33 31 126777787210 01233444455566677889999999
Q ss_pred EEEeeecccCceeEEEEcCCC
Q 004456 313 LVNETWYKTSQTRTWLVCPGS 333 (752)
Q Consensus 313 l~~~~~~~~~~~~l~~~~~~~ 333 (752)
++.+.... ..+-++|++.
T Consensus 335 lyVanklS---~tVSVIDv~k 352 (635)
T PRK02888 335 FIANGKLS---PTVTVIDVRK 352 (635)
T ss_pred EEEeCCCC---CcEEEEEChh
Confidence 88865322 3477788766
No 327
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=97.72 E-value=0.019 Score=61.74 Aligned_cols=270 Identities=16% Similarity=0.132 Sum_probs=144.3
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (752)
.+...+.|||++.|||+... .++..-.|.+.++++|+...-.-.. ....+.|++|++.++|+.......
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~-----~G~e~y~lr~kdL~tg~~~~d~i~~------~~~~~~Wa~d~~~lfYt~~d~~~r 198 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDV-----LGDEQYTLRFKDLATGEELPDEITN------TSGSFAWAADGKTLFYTRLDENHR 198 (682)
T ss_pred eeeeeeeCCCCceEEEEEec-----ccccEEEEEEEecccccccchhhcc------cccceEEecCCCeEEEEEEcCCCC
Confidence 57778999999999998752 1244467889999998866542221 246789999999999986543322
Q ss_pred CCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCC--C-ccccCCc---cceeccccCCC
Q 004456 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--T-AKDFGTP---AVYTAVEPSPD 185 (752)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G--~-~~~l~~~---~~~~~~~~SpD 185 (752)
..+||.-.+.+ . -+.+.+. ....++.-|.+
T Consensus 199 --------------------------------------------p~kv~~h~~gt~~~~d~lvyeE~d~~f~~~v~~s~s 234 (682)
T COG1770 199 --------------------------------------------PDKVWRHRLGTPGSSDELVYEEKDDRFFLSVGRSRS 234 (682)
T ss_pred --------------------------------------------cceEEEEecCCCCCcceEEEEcCCCcEEEEeeeccC
Confidence 15777777733 2 2333322 44557777888
Q ss_pred CceEEEEecccCccccccccCccccEEEEecCCce--eEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEec
Q 004456 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL--VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (752)
Q Consensus 186 Gk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~ 263 (752)
.++|++...... .+++++.+.+... .+.+...+.. -+.....-|.. ++..+..
T Consensus 235 ~~yi~i~~~~~~----------tsE~~ll~a~~p~~~p~vv~pr~~g--------------~eY~~eh~~d~-f~i~sN~ 289 (682)
T COG1770 235 EAYIVISLGSHI----------TSEVRLLDADDPEAEPKVVLPRENG--------------VEYSVEHGGDR-FYILSNA 289 (682)
T ss_pred CceEEEEcCCCc----------ceeEEEEecCCCCCceEEEEEcCCC--------------cEEeeeecCcE-EEEEecC
Confidence 888888764432 1467777665332 2322222110 01222233554 4444322
Q ss_pred cCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccc
Q 004456 264 DRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD 343 (752)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 343 (752)
++ . +-.|+...+.+ ....-+.+........--.++-=.++|+... ......+|++.+.+++ .+...-++
T Consensus 290 ~g--k------nf~l~~ap~~~-~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~e-R~~glp~v~v~~~~~~-~~~~i~f~ 358 (682)
T COG1770 290 DG--K------NFKLVRAPVSA-DKSNWRELIPHREDVRLEGVDLFADHLVLLE-RQEGLPRVVVRDRKTG-EERGIAFD 358 (682)
T ss_pred CC--c------ceEEEEccCCC-ChhcCeeeeccCCCceeeeeeeeccEEEEEe-cccCCceEEEEecCCC-ceeeEEec
Confidence 22 1 12555544411 1223334444333333333444456666654 3335567888888764 22222122
Q ss_pred cccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeecc
Q 004456 344 RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESN 414 (752)
Q Consensus 344 ~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~ 414 (752)
........ .+.+ -++...|.+... . -.....++-+|+.+++.+.|-..+
T Consensus 359 ~~ay~~~l-~~~~----e~~s~~lR~~ys--------------S---~ttP~~~~~~dm~t~er~~Lkqqe 407 (682)
T COG1770 359 DEAYSAGL-SGNP----EFDSDRLRYSYS--------------S---MTTPATLFDYDMATGERTLLKQQE 407 (682)
T ss_pred chhhhccc-cCCC----CCCCccEEEEee--------------c---ccccceeEEeeccCCcEEEEEecc
Confidence 11111100 0111 234444544431 1 133456999999999988775543
No 328
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=97.71 E-value=0.00064 Score=65.51 Aligned_cols=56 Identities=14% Similarity=0.146 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCC---CceeEEEEccCC
Q 004456 581 QLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHAP---HLFCCGIARSGS 636 (752)
Q Consensus 581 ~~~~d~~~~~~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~~~~~p---~~~~~~v~~~~~ 636 (752)
...+-+.++++.+.+.. ...+.+|.++||||||.+|-.++...+ +.++.+|.++.+
T Consensus 61 ~q~~~~~~~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~tP 122 (225)
T PF07819_consen 61 RQAEFLAEAIKYILELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGTP 122 (225)
T ss_pred HHHHHHHHHHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcCC
Confidence 33445556666665543 345689999999999999988876543 467888877654
No 329
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=97.71 E-value=0.0052 Score=68.60 Aligned_cols=91 Identities=12% Similarity=0.079 Sum_probs=63.1
Q ss_pred CeEEEeeccccccccccCcceEEEEEcccCcceec-cCCCCccccccccceEEecCCcEEEE-EecCCCCCCCCCccCCC
Q 004456 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL-FESPDICLNAVFGSFVWVNNSTLLIF-TIPSSRRDPPKKTMVPL 120 (752)
Q Consensus 43 ~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~l-t~~~~~~~~~~~~~~~wspdg~~l~~-~~~~~~~~~~~~~~~~~ 120 (752)
.+|||+.. ...+|.++|.+|..++.+ +.... .+..|.|||||+.|+| ++...-.
T Consensus 319 tkiAfv~~---------~~~~L~~~D~dG~n~~~ve~~~~~-----~i~sP~~SPDG~~vAY~ts~e~~~---------- 374 (912)
T TIGR02171 319 AKLAFRND---------VTGNLAYIDYTKGASRAVEIEDTI-----SVYHPDISPDGKKVAFCTGIEGLP---------- 374 (912)
T ss_pred eeEEEEEc---------CCCeEEEEecCCCCceEEEecCCC-----ceecCcCCCCCCEEEEEEeecCCC----------
Confidence 46888642 113999999999999988 65544 3567899999999999 5332100
Q ss_pred CCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc--CC-CccccCCc-cceeccccCCCCceEEE
Q 004456 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL--DG-TAKDFGTP-AVYTAVEPSPDQKYVLI 191 (752)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~--~G-~~~~l~~~-~~~~~~~~SpDGk~l~~ 191 (752)
+.+.||+.+| +| ...+|... ..+..-...+.|..+++
T Consensus 375 ----------------------------------g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e~gdt~iv 415 (912)
T TIGR02171 375 ----------------------------------GKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLENGDTVIV 415 (912)
T ss_pred ----------------------------------CCceEEEEehhccCCCceEeecccccccceEecCCCCeEEE
Confidence 1267999999 45 55556544 66667777888866544
No 330
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.70 E-value=0.0012 Score=60.19 Aligned_cols=88 Identities=13% Similarity=0.129 Sum_probs=64.3
Q ss_pred hhHHHHHhCCcEEEecCCC-CCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-
Q 004456 546 TSSLIFLARRFAVLAGPSI-PIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA- 623 (752)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~-~~~g~g~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~- 623 (752)
.....+.+.+|.++.+... ...|+|.. .+.+..+|+..+++++....+ ..+|+++|||-|-.=.++++.+.
T Consensus 57 ~L~~~lde~~wslVq~q~~Ssy~G~Gt~-----slk~D~edl~~l~~Hi~~~~f--St~vVL~GhSTGcQdi~yYlTnt~ 129 (299)
T KOG4840|consen 57 MLNRYLDENSWSLVQPQLRSSYNGYGTF-----SLKDDVEDLKCLLEHIQLCGF--STDVVLVGHSTGCQDIMYYLTNTT 129 (299)
T ss_pred HHHHHHhhccceeeeeeccccccccccc-----cccccHHHHHHHHHHhhccCc--ccceEEEecCccchHHHHHHHhcc
Confidence 4566778999999883332 23455543 234557888899997765543 34899999999999888888543
Q ss_pred -CCceeEEEEccCCCCCC
Q 004456 624 -PHLFCCGIARSGSYNKT 640 (752)
Q Consensus 624 -p~~~~~~v~~~~~~~~~ 640 (752)
+..++++|+.+|+.|..
T Consensus 130 ~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 130 KDRKIRAAILQAPVSDRE 147 (299)
T ss_pred chHHHHHHHHhCccchhh
Confidence 56789999999998855
No 331
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.70 E-value=0.00055 Score=63.25 Aligned_cols=150 Identities=11% Similarity=0.027 Sum_probs=91.3
Q ss_pred CccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCcccccc
Q 004456 167 TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMR 245 (752)
Q Consensus 167 ~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 245 (752)
....+..+ +.+..+-|--.-+.|+-.+.+ ..+.+||..++..++-...+.. +.
T Consensus 135 pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd-------------~tVRLWD~rTgt~v~sL~~~s~-------------Vt 188 (334)
T KOG0278|consen 135 PPKEISGHTGGIRTVLWCHEDKCILSSADD-------------KTVRLWDHRTGTEVQSLEFNSP-------------VT 188 (334)
T ss_pred CchhhcCCCCcceeEEEeccCceEEeeccC-------------CceEEEEeccCcEEEEEecCCC-------------Cc
Confidence 44444444 788888888888888776444 3799999987765543333222 55
Q ss_pred ceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCcee
Q 004456 246 SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTR 325 (752)
Q Consensus 246 ~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~ 325 (752)
++-.|+||+. |..+ ....+-.||+ +.-....-......+.+.+.+|+...++... ....
T Consensus 189 SlEvs~dG~i-lTia-------------~gssV~Fwda---ksf~~lKs~k~P~nV~SASL~P~k~~fVaGg----ed~~ 247 (334)
T KOG0278|consen 189 SLEVSQDGRI-LTIA-------------YGSSVKFWDA---KSFGLLKSYKMPCNVESASLHPKKEFFVAGG----EDFK 247 (334)
T ss_pred ceeeccCCCE-EEEe-------------cCceeEEecc---ccccceeeccCccccccccccCCCceEEecC----cceE
Confidence 7889999995 3333 2335566676 3323333345556677788899986666644 3346
Q ss_pred EEEEcCCCCCccceecc-ccccccccCCCCCCceeeCCCCCeEEEee
Q 004456 326 TWLVCPGSKDVAPRVLF-DRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (752)
Q Consensus 326 l~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~p~~~~s~dg~~l~~~~ 371 (752)
+|.+|..++ +.+-.. ....+.+. .+.+||||..-+..+
T Consensus 248 ~~kfDy~Tg--eEi~~~nkgh~gpVh------cVrFSPdGE~yAsGS 286 (334)
T KOG0278|consen 248 VYKFDYNTG--EEIGSYNKGHFGPVH------CVRFSPDGELYASGS 286 (334)
T ss_pred EEEEeccCC--ceeeecccCCCCceE------EEEECCCCceeeccC
Confidence 889998885 333332 22221111 256899997655555
No 332
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=97.69 E-value=0.0032 Score=63.40 Aligned_cols=220 Identities=11% Similarity=0.068 Sum_probs=125.4
Q ss_pred cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCC
Q 004456 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (752)
Q Consensus 175 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~ 254 (752)
..-.++.|++.-+.-+.+.... ..+.+||++......- ....-..|.++...+.+++|+|--+
T Consensus 178 ~eg~glsWn~~~~g~Lls~~~d------------~~i~lwdi~~~~~~~~-----~~~p~~~~~~h~~~VeDV~~h~~h~ 240 (422)
T KOG0264|consen 178 KEGYGLSWNRQQEGTLLSGSDD------------HTICLWDINAESKEDK-----VVDPKTIFSGHEDVVEDVAWHPLHE 240 (422)
T ss_pred ccccccccccccceeEeeccCC------------CcEEEEeccccccCCc-----cccceEEeecCCcceehhhccccch
Confidence 3355789999887776665553 4788999875432100 0001123344455577899999877
Q ss_pred ceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEE-eecccceeeeeeecCCceEEEeeecccCceeEEEEcCCC
Q 004456 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL-HKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (752)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 333 (752)
.++..++ ..+.|.++|++.. ..++... ....+.+..++|+|-+..|+.+.. ..+.|.++|+..
T Consensus 241 ~lF~sv~------------dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S---~D~tV~LwDlRn 304 (422)
T KOG0264|consen 241 DLFGSVG------------DDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEFILATGS---ADKTVALWDLRN 304 (422)
T ss_pred hhheeec------------CCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCceEEecc---CCCcEEEeechh
Confidence 6333332 4558999998521 3333333 344677899999998877666542 334688888876
Q ss_pred CCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCC-CceeEEee
Q 004456 334 KDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINT-GSKERIWE 412 (752)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~-g~~~~l~~ 412 (752)
- ..+...++.... ....+.|||.-..++.++. .-.++.+||+.. |+.+. ..
T Consensus 305 L-~~~lh~~e~H~d------ev~~V~WSPh~etvLASSg--------------------~D~rl~vWDls~ig~eq~-~e 356 (422)
T KOG0264|consen 305 L-NKPLHTFEGHED------EVFQVEWSPHNETVLASSG--------------------TDRRLNVWDLSRIGEEQS-PE 356 (422)
T ss_pred c-ccCceeccCCCc------ceEEEEeCCCCCceeEecc--------------------cCCcEEEEeccccccccC-hh
Confidence 3 121222222221 2223679999988877762 223588888854 33322 11
Q ss_pred ccchhhhh---ceeeeecCCcceecccCCCEEEEEEecCCCCcEEEE
Q 004456 413 SNREKYFE---TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHI 456 (752)
Q Consensus 413 ~~~~~~~~---~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~ 456 (752)
+..+...+ ...+...-...++|.|...+++++.+..+ .-+||.
T Consensus 357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN-~LqIW~ 402 (422)
T KOG0264|consen 357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDN-ILQIWQ 402 (422)
T ss_pred hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCc-eEEEee
Confidence 11110111 11111222445899999999999887665 334444
No 333
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.69 E-value=7.6e-05 Score=64.63 Aligned_cols=119 Identities=21% Similarity=0.249 Sum_probs=78.4
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCccccccchhhhHHHHHhcCh
Q 004456 586 AEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRTLWEATNVYIEMSP 665 (752)
Q Consensus 586 ~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (752)
-.+--.|++++.. +.+..+.|.||||++|+.+..++|+.|.++|+++|.++....--++. .....+ .+|
T Consensus 87 H~AyerYv~eEal--pgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg~yy-ddDv~y--------nsP 155 (227)
T COG4947 87 HRAYERYVIEEAL--PGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFGGYY-DDDVYY--------NSP 155 (227)
T ss_pred HHHHHHHHHHhhc--CCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhccccc-cCceee--------cCh
Confidence 3344467777653 34588899999999999999999999999999999987542111111 111111 233
Q ss_pred hhhcCCC----------CCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCcc
Q 004456 666 ITHANKI----------KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHV 719 (752)
Q Consensus 666 ~~~~~~~----------~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 719 (752)
..++..+ +.-+.+..|..|+..+ +.+.+.+.|..+..+..+....+..|.
T Consensus 156 ~dylpg~~dp~~l~rlr~~~~vfc~G~e~~~L~----~~~~L~~~l~dKqipaw~~~WggvaHd 215 (227)
T COG4947 156 SDYLPGLADPFRLERLRRIDMVFCIGDEDPFLD----NNQHLSRLLSDKQIPAWMHVWGGVAHD 215 (227)
T ss_pred hhhccCCcChHHHHHHhhccEEEEecCcccccc----chHHHHHHhccccccHHHHHhcccccc
Confidence 3333222 2347888888888754 556788888777677666666665564
No 334
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.67 E-value=0.0012 Score=71.48 Aligned_cols=164 Identities=14% Similarity=0.135 Sum_probs=98.3
Q ss_pred cEEEEEccCC-CccccCCc-cceeccccCCCCceEEE-EecccCccccccccCccccEEEEecCCceeEEecCCCCCCCC
Q 004456 157 AQLVLGSLDG-TAKDFGTP-AVYTAVEPSPDQKYVLI-TSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (752)
Q Consensus 157 ~~i~~~~~~G-~~~~l~~~-~~~~~~~~SpDGk~l~~-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 233 (752)
..+.+|++.- +.-.+..+ ..+..++|.|-...-++ .+.+ .++.+|++-..++..-++...-
T Consensus 390 KTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD-------------~KvRiWsI~d~~Vv~W~Dl~~l--- 453 (712)
T KOG0283|consen 390 KTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLD-------------GKVRLWSISDKKVVDWNDLRDL--- 453 (712)
T ss_pred ccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccc-------------cceEEeecCcCeeEeehhhhhh---
Confidence 4677777744 44455555 78889999997654444 3333 4899999998888877776533
Q ss_pred CcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeE---Eee------cccceeee
Q 004456 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI---LHK------LDLRFRSV 304 (752)
Q Consensus 234 ~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---l~~------~~~~~~~~ 304 (752)
+..+.++|||+.+|+=+ ..+.+..+++. +-..+. +.. ....++.+
T Consensus 454 ----------ITAvcy~PdGk~avIGt-------------~~G~C~fY~t~---~lk~~~~~~I~~~~~Kk~~~~rITG~ 507 (712)
T KOG0283|consen 454 ----------ITAVCYSPDGKGAVIGT-------------FNGYCRFYDTE---GLKLVSDFHIRLHNKKKKQGKRITGL 507 (712)
T ss_pred ----------heeEEeccCCceEEEEE-------------eccEEEEEEcc---CCeEEEeeeEeeccCccccCceeeee
Confidence 67899999999733333 44566666662 221111 111 12257778
Q ss_pred eeecCC-ceEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeee
Q 004456 305 SWCDDS-LALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (752)
Q Consensus 305 ~~spDg-~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~ 372 (752)
.+.|-. ..|+.++ ...+|.++|..+. .....+.+-... ...-.-+++.||++|+..+.
T Consensus 508 Q~~p~~~~~vLVTS----nDSrIRI~d~~~~--~lv~KfKG~~n~----~SQ~~Asfs~Dgk~IVs~se 566 (712)
T KOG0283|consen 508 QFFPGDPDEVLVTS----NDSRIRIYDGRDK--DLVHKFKGFRNT----SSQISASFSSDGKHIVSASE 566 (712)
T ss_pred EecCCCCCeEEEec----CCCceEEEeccch--hhhhhhcccccC----CcceeeeEccCCCEEEEeec
Confidence 877543 3477766 3446888887542 112222211110 11112347889999999983
No 335
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.67 E-value=0.0035 Score=62.75 Aligned_cols=188 Identities=10% Similarity=0.093 Sum_probs=111.1
Q ss_pred CCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecC
Q 004456 28 PDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPS 107 (752)
Q Consensus 28 ~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~ 107 (752)
+....++.....|.|+|+..+++ ....-..+..+|........... ...+...++.|||-.+.-.+
T Consensus 301 ~h~~~V~~ls~h~tgeYllsAs~----------d~~w~Fsd~~~g~~lt~vs~~~s--~v~~ts~~fHpDgLifgtgt-- 366 (506)
T KOG0289|consen 301 PHEEPVTGLSLHPTGEYLLSASN----------DGTWAFSDISSGSQLTVVSDETS--DVEYTSAAFHPDGLIFGTGT-- 366 (506)
T ss_pred cccccceeeeeccCCcEEEEecC----------CceEEEEEccCCcEEEEEeeccc--cceeEEeeEcCCceEEeccC--
Confidence 33345888999999999998743 23444445555543222222111 11356789999997444221
Q ss_pred CCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CC-CccccCCc-cceeccccCC
Q 004456 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSP 184 (752)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G-~~~~l~~~-~~~~~~~~Sp 184 (752)
..+.|..||+ ++ ...++..+ +.+..++||.
T Consensus 367 -----------------------------------------------~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsE 399 (506)
T KOG0289|consen 367 -----------------------------------------------PDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSE 399 (506)
T ss_pred -----------------------------------------------CCceEEEEEcCCccccccCCCCCCceeEEEecc
Confidence 1268899999 55 66666666 8999999999
Q ss_pred CCceEEEEecccCccccccccCccccEEEEecCCce-eEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEec
Q 004456 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (752)
Q Consensus 185 DGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~ 263 (752)
+|-+|+....+. .+.+||+..-. .+.+.... . .++..+.|.+.|++ |....
T Consensus 400 NGY~Lat~add~-------------~V~lwDLRKl~n~kt~~l~~---~---------~~v~s~~fD~SGt~-L~~~g-- 451 (506)
T KOG0289|consen 400 NGYWLATAADDG-------------SVKLWDLRKLKNFKTIQLDE---K---------KEVNSLSFDQSGTY-LGIAG-- 451 (506)
T ss_pred CceEEEEEecCC-------------eEEEEEehhhcccceeeccc---c---------ccceeEEEcCCCCe-EEeec--
Confidence 999999987664 69999986432 22222111 1 12557899999997 44442
Q ss_pred cCCCCccccCccceEEeccCCCCCCCCCeEEe---ecccceeeeeeecCCceEEEee
Q 004456 264 DRGDANVEVSPRDIIYTQPAEPAEGEKPEILH---KLDLRFRSVSWCDDSLALVNET 317 (752)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~---~~~~~~~~~~~spDg~~l~~~~ 317 (752)
..-.+|+..- .+.+-+.+. ...+-...+.|..+.+.++..+
T Consensus 452 ----------~~l~Vy~~~k---~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~s 495 (506)
T KOG0289|consen 452 ----------SDLQVYICKK---KTKSWTEIKELADHSGLSTGVRFGEHAQYLASTS 495 (506)
T ss_pred ----------ceeEEEEEec---ccccceeeehhhhcccccceeeecccceEEeecc
Confidence 1225666653 333333332 2222334455555566555544
No 336
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=97.67 E-value=0.0001 Score=48.64 Aligned_cols=38 Identities=26% Similarity=0.528 Sum_probs=25.3
Q ss_pred eeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEE
Q 004456 22 KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWI 66 (752)
Q Consensus 22 ~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v 66 (752)
++++..+ .....|.|||||++|+|++.+. + .+..+||+
T Consensus 2 ~~~t~~~--~~~~~p~~SpDGk~i~f~s~~~----~-~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNSP--GDDGSPAWSPDGKYIYFTSNRN----D-RGSFDIYV 39 (39)
T ss_dssp EEES-SS--SSEEEEEE-TTSSEEEEEEECT-------SSEEEEE
T ss_pred cCcccCC--ccccCEEEecCCCEEEEEecCC----C-CCCcCEEC
Confidence 4566333 3588999999999999988632 1 36677875
No 337
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.65 E-value=0.0031 Score=63.13 Aligned_cols=195 Identities=11% Similarity=0.093 Sum_probs=118.7
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (752)
.+....++||-..++-. +....|+|+.+.......+...... .|..+.-.|.|++|+.++.+
T Consensus 263 ki~~v~~~~~~~~v~~a----------Sad~~i~vws~~~~s~~~~~~~h~~----~V~~ls~h~tgeYllsAs~d---- 324 (506)
T KOG0289|consen 263 KITSVKFHKDLDTVITA----------SADEIIRVWSVPLSSEPTSSRPHEE----PVTGLSLHPTGEYLLSASND---- 324 (506)
T ss_pred EEEEEEeccchhheeec----------CCcceEEeeccccccCccccccccc----cceeeeeccCCcEEEEecCC----
Confidence 67778888888777664 3446788887666554444333322 35566778888888766431
Q ss_pred CCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CC-CccccCCc---cceeccccCCCC
Q 004456 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP---AVYTAVEPSPDQ 186 (752)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G-~~~~l~~~---~~~~~~~~SpDG 186 (752)
+..-..+. +| ....+... -.+.+.+|.|||
T Consensus 325 ---------------------------------------------~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg 359 (506)
T KOG0289|consen 325 ---------------------------------------------GTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG 359 (506)
T ss_pred ---------------------------------------------ceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc
Confidence 11111122 33 22223221 457899999999
Q ss_pred ceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCC
Q 004456 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (752)
Q Consensus 187 k~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~ 266 (752)
-.+.-...+ +.+.+||+.+.. .+..-++ +...+..++||-+|-+ |+..+
T Consensus 360 Lifgtgt~d-------------~~vkiwdlks~~--~~a~Fpg----------ht~~vk~i~FsENGY~-Lat~a----- 408 (506)
T KOG0289|consen 360 LIFGTGTPD-------------GVVKIWDLKSQT--NVAKFPG----------HTGPVKAISFSENGYW-LATAA----- 408 (506)
T ss_pred eEEeccCCC-------------ceEEEEEcCCcc--ccccCCC----------CCCceeEEEeccCceE-EEEEe-----
Confidence 554443323 478999998764 2222222 2233789999999987 77665
Q ss_pred CCccccCccceEEeccCCCCCCCCCeEEe-ecccceeeeeeecCCceEEEeeecccCceeEEEEcCCC
Q 004456 267 DANVEVSPRDIIYTQPAEPAEGEKPEILH-KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (752)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~-~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 333 (752)
..+.+.+||++ +-...+.+. .....+..+.|-+-|++|+... ..-.+|+..-.+
T Consensus 409 -------dd~~V~lwDLR--Kl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g----~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 409 -------DDGSVKLWDLR--KLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG----SDLQVYICKKKT 463 (506)
T ss_pred -------cCCeEEEEEeh--hhcccceeeccccccceeEEEcCCCCeEEeec----ceeEEEEEeccc
Confidence 23358899985 333444443 2333577788889999988864 334566666433
No 338
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.64 E-value=0.001 Score=61.57 Aligned_cols=193 Identities=13% Similarity=0.162 Sum_probs=120.9
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEccc--CcceeccCCCCccccccccceEEecCCcEEEEEecCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET--GEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~--g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~ 109 (752)
-+...+||-|.++|+-... ..-|.|.++.. .+++.+..++. .++...|-...+.|+-++.
T Consensus 102 ivk~~af~~ds~~lltgg~----------ekllrvfdln~p~App~E~~ghtg-----~Ir~v~wc~eD~~iLSSad--- 163 (334)
T KOG0278|consen 102 IVKAVAFSQDSNYLLTGGQ----------EKLLRVFDLNRPKAPPKEISGHTG-----GIRTVLWCHEDKCILSSAD--- 163 (334)
T ss_pred eeeeEEecccchhhhccch----------HHHhhhhhccCCCCCchhhcCCCC-----cceeEEEeccCceEEeecc---
Confidence 4667788888888876321 12233444433 44455543333 5777888877777775421
Q ss_pred CCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CC-CccccCCccceeccccCCCCc
Q 004456 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQK 187 (752)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G-~~~~l~~~~~~~~~~~SpDGk 187 (752)
...|.+||. +| +++.|..+-.+.++..|+||+
T Consensus 164 ----------------------------------------------d~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ 197 (334)
T KOG0278|consen 164 ----------------------------------------------DKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR 197 (334)
T ss_pred ----------------------------------------------CCceEEEEeccCcEEEEEecCCCCcceeeccCCC
Confidence 146888888 88 666666668889999999999
Q ss_pred eEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCC
Q 004456 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (752)
Q Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~ 267 (752)
.|..... ..+..||.++=....-...|-+ +...+.+|+.. ++++..
T Consensus 198 ilTia~g--------------ssV~Fwdaksf~~lKs~k~P~n-------------V~SASL~P~k~--~fVaGg----- 243 (334)
T KOG0278|consen 198 ILTIAYG--------------SSVKFWDAKSFGLLKSYKMPCN-------------VESASLHPKKE--FFVAGG----- 243 (334)
T ss_pred EEEEecC--------------ceeEEeccccccceeeccCccc-------------cccccccCCCc--eEEecC-----
Confidence 8877532 2577788776544333333332 55678999885 444421
Q ss_pred CccccCccceEEeccCCCCCCCCCeEE--eecccceeeeeeecCCceEEEeeecccCceeEEEEcCCC
Q 004456 268 ANVEVSPRDIIYTQPAEPAEGEKPEIL--HKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (752)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~l--~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 333 (752)
....+|.+|- .+++.... -..-+.+..+.|||||...+..+.+ +..+||.+.+..
T Consensus 244 ------ed~~~~kfDy---~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSED--GTirlWQt~~~~ 300 (334)
T KOG0278|consen 244 ------EDFKVYKFDY---NTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSED--GTIRLWQTTPGK 300 (334)
T ss_pred ------cceEEEEEec---cCCceeeecccCCCCceEEEEECCCCceeeccCCC--ceEEEEEecCCC
Confidence 2226777776 44443333 2344568889999999876666532 445788877654
No 339
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.64 E-value=0.048 Score=56.03 Aligned_cols=278 Identities=11% Similarity=0.069 Sum_probs=150.0
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcc--eeccCCCCccccccccceEEecCCcEEEEEecCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~--~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~ 109 (752)
.+....|.|-+.-|..+. +..+|+.+..+++.. ++-++....+ . .+..+.|.++|+.|-= .
T Consensus 202 ~v~~a~FHPtd~nliit~----------Gk~H~~Fw~~~~~~l~k~~~~fek~ek-k-~Vl~v~F~engdviTg--D--- 264 (626)
T KOG2106|consen 202 VVFLATFHPTDPNLIITC----------GKGHLYFWTLRGGSLVKRQGIFEKREK-K-FVLCVTFLENGDVITG--D--- 264 (626)
T ss_pred eEEEEEeccCCCcEEEEe----------CCceEEEEEccCCceEEEeeccccccc-e-EEEEEEEcCCCCEEee--c---
Confidence 356788999998888763 458999999998873 3333332222 1 4668889999986531 0
Q ss_pred CCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCC--CccccCCc-cceeccccCCCC
Q 004456 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--TAKDFGTP-AVYTAVEPSPDQ 186 (752)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G--~~~~l~~~-~~~~~~~~SpDG 186 (752)
..+.|.+|+..+ ..++...+ +++..+..-.||
T Consensus 265 ---------------------------------------------S~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G 299 (626)
T KOG2106|consen 265 ---------------------------------------------SGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDG 299 (626)
T ss_pred ---------------------------------------------CCceEEEEeCCCceEEeEeeecCCceEEEEEecCc
Confidence 126788888755 23333333 888888888999
Q ss_pred ceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCC
Q 004456 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (752)
Q Consensus 187 k~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~ 266 (752)
+.|- ...+ ..|..||-+-+..+. ++.|...+. +| ...+.+.. |+.-.
T Consensus 300 tllS-GgKD-------------Rki~~Wd~~y~k~r~-~elPe~~G~----------iR--tv~e~~~d-i~vGT----- 346 (626)
T KOG2106|consen 300 TLLS-GGKD-------------RKIILWDDNYRKLRE-TELPEQFGP----------IR--TVAEGKGD-ILVGT----- 346 (626)
T ss_pred cEee-cCcc-------------ceEEecccccccccc-ccCchhcCC----------ee--EEecCCCc-EEEee-----
Confidence 8875 2222 378888843332222 222211111 11 22333333 33322
Q ss_pred CCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceecccccc
Q 004456 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVF 346 (752)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 346 (752)
.++.|..=.+ ..+-.............++-.|+...++... +..++.+++ +...+-..+++...
T Consensus 347 -------trN~iL~Gt~---~~~f~~~v~gh~delwgla~hps~~q~~T~g----qdk~v~lW~--~~k~~wt~~~~d~~ 410 (626)
T KOG2106|consen 347 -------TRNFILQGTL---ENGFTLTVQGHGDELWGLATHPSKNQLLTCG----QDKHVRLWN--DHKLEWTKIIEDPA 410 (626)
T ss_pred -------ccceEEEeee---cCCceEEEEecccceeeEEcCCChhheeecc----CcceEEEcc--CCceeEEEEecCce
Confidence 2334444344 2221111222222456677888888777765 334455665 22122222332222
Q ss_pred ccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeeccchhhhhceeeee
Q 004456 347 ENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALV 426 (752)
Q Consensus 347 ~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~ 426 (752)
.- ..+-|.| .|+.....+ +..++|.++..+..+-.++.. +.
T Consensus 411 ~~---------~~fhpsg-~va~Gt~~G---------------------~w~V~d~e~~~lv~~~~d~~~-----ls--- 451 (626)
T KOG2106|consen 411 EC---------ADFHPSG-VVAVGTATG---------------------RWFVLDTETQDLVTIHTDNEQ-----LS--- 451 (626)
T ss_pred eE---------eeccCcc-eEEEeeccc---------------------eEEEEecccceeEEEEecCCc-----eE---
Confidence 21 3368888 677766332 578889887555555444322 12
Q ss_pred cCCcceecccCCCEEEEEEecCCCCcEEEEEECCCCCee
Q 004456 427 FGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSS 465 (752)
Q Consensus 427 ~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~~g~~~ 465 (752)
...+||||..++....+.- . -||+++..+.+..
T Consensus 452 ----~v~ysp~G~~lAvgs~d~~-i-yiy~Vs~~g~~y~ 484 (626)
T KOG2106|consen 452 ----VVRYSPDGAFLAVGSHDNH-I-YIYRVSANGRKYS 484 (626)
T ss_pred ----EEEEcCCCCEEEEecCCCe-E-EEEEECCCCcEEE
Confidence 2478999999887643322 1 2555554433333
No 340
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.0048 Score=57.47 Aligned_cols=223 Identities=13% Similarity=0.144 Sum_probs=133.1
Q ss_pred cceeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCc
Q 004456 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (752)
Q Consensus 4 ~~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~ 83 (752)
+..|++.+++. . +-.+....+--.......+||++-..+++++ .+.+.|.++| .+....+|....++
T Consensus 37 ~G~L~ile~~~--~-~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a---------~GDGSLrl~d-~~~~s~Pi~~~kEH 103 (311)
T KOG0277|consen 37 NGRLFILEVTD--P-KGIQECQSYDTEDGLFDVAWSENHENQVIAA---------SGDGSLRLFD-LTMPSKPIHKFKEH 103 (311)
T ss_pred CceEEEEecCC--C-CCeEEEEeeecccceeEeeecCCCcceEEEE---------ecCceEEEec-cCCCCcchhHHHhh
Confidence 35678888863 1 2333333222222588899999999999986 3446777777 34444444322221
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEc
Q 004456 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (752)
Q Consensus 84 ~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~ 163 (752)
. ..+.++.|++-.+.++.++. .. ..|.+++
T Consensus 104 ~--~EV~Svdwn~~~r~~~ltsS--WD----------------------------------------------~TiKLW~ 133 (311)
T KOG0277|consen 104 K--REVYSVDWNTVRRRIFLTSS--WD----------------------------------------------GTIKLWD 133 (311)
T ss_pred h--hheEEeccccccceeEEeec--cC----------------------------------------------CceEeec
Confidence 1 14678899987666665531 11 3566666
Q ss_pred cCC--CccccCCc-cceeccccCCC-CceEEEEecccCccccccccCccccEEEEecCCc--eeEEecCCCCCCCCCccc
Q 004456 164 LDG--TAKDFGTP-AVYTAVEPSPD-QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK--LVRELCDLPPAEDIPVCY 237 (752)
Q Consensus 164 ~~G--~~~~l~~~-~~~~~~~~SpD-Gk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~ 237 (752)
.+- ..+....+ ..+....|||- ++.++..+.+. .+.+||+... ... +....
T Consensus 134 ~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~-------------~l~lwdvr~~gk~~~-i~ah~--------- 190 (311)
T KOG0277|consen 134 PNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG-------------TLRLWDVRSPGKFMS-IEAHN--------- 190 (311)
T ss_pred CCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc-------------eEEEEEecCCCceeE-EEecc---------
Confidence 633 45555555 77889999997 45666665553 6777876533 222 22221
Q ss_pred CCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEee
Q 004456 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNET 317 (752)
Q Consensus 238 ~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~ 317 (752)
..+...-|+.=... ++.+.. -.+.|+.||+.... .....|......++.+.|||-...|+.++
T Consensus 191 ----~Eil~cdw~ky~~~-vl~Tg~-----------vd~~vr~wDir~~r-~pl~eL~gh~~AVRkvk~Sph~~~lLaSa 253 (311)
T KOG0277|consen 191 ----SEILCCDWSKYNHN-VLATGG-----------VDNLVRGWDIRNLR-TPLFELNGHGLAVRKVKFSPHHASLLASA 253 (311)
T ss_pred ----ceeEeecccccCCc-EEEecC-----------CCceEEEEehhhcc-ccceeecCCceEEEEEecCcchhhHhhhc
Confidence 22456788876666 666642 34478899985321 11223444556789999999998888877
Q ss_pred ecccCceeEEEEc
Q 004456 318 WYKTSQTRTWLVC 330 (752)
Q Consensus 318 ~~~~~~~~l~~~~ 330 (752)
.++ -..+||...
T Consensus 254 sYD-mT~riw~~~ 265 (311)
T KOG0277|consen 254 SYD-MTVRIWDPE 265 (311)
T ss_pred ccc-ceEEecccc
Confidence 666 334555544
No 341
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.00082 Score=75.27 Aligned_cols=233 Identities=15% Similarity=0.191 Sum_probs=141.1
Q ss_pred eeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCCe----EEEeeccccccccccCcceEEEEEccc----Ccceec
Q 004456 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR----IAFSVRVDEEDNVSSCKLRVWIADAET----GEAKPL 77 (752)
Q Consensus 6 ~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~----ia~~~~~~~~~~~~~~~~~l~v~~~~~----g~~~~l 77 (752)
.+.+.+++-....+..+.+-.+....+-+..+|++.|.. ||=. ..+++|-+++.+. ++.-.|
T Consensus 40 slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG----------~edG~I~ly~p~~~~~~~~~~~l 109 (1049)
T KOG0307|consen 40 SLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGG----------LEDGNIVLYDPASIIANASEEVL 109 (1049)
T ss_pred ccceeeecccCccccccccccccccccceeeeecccCCCccceeecc----------ccCCceEEecchhhccCcchHHH
Confidence 344444444333344466666666668889999999998 4432 2234555555443 332222
Q ss_pred cCCCCccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhccc
Q 004456 78 FESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTA 157 (752)
Q Consensus 78 t~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 157 (752)
..... ..+.|..+.|+|....++.... ..+
T Consensus 110 a~~~~--h~G~V~gLDfN~~q~nlLASGa------------------------------------------------~~g 139 (1049)
T KOG0307|consen 110 ATKSK--HTGPVLGLDFNPFQGNLLASGA------------------------------------------------DDG 139 (1049)
T ss_pred hhhcc--cCCceeeeeccccCCceeeccC------------------------------------------------CCC
Confidence 22111 1224778999998764443210 127
Q ss_pred EEEEEccCCCcccc---CCc--cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCce-eEEecCCCCCC
Q 004456 158 QLVLGSLDGTAKDF---GTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAE 231 (752)
Q Consensus 158 ~i~~~~~~G~~~~l---~~~--~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~ 231 (752)
+|++||++.-..+. +.. ..+..++|...-.+|+-..... +.+.+||+..++ ...+.+....
T Consensus 140 eI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~s------------g~~~iWDlr~~~pii~ls~~~~~- 206 (1049)
T KOG0307|consen 140 EILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPS------------GRAVIWDLRKKKPIIKLSDTPGR- 206 (1049)
T ss_pred cEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCC------------CCceeccccCCCcccccccCCCc-
Confidence 89999995522222 222 6788899988877776654443 478899998663 3344444332
Q ss_pred CCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCc
Q 004456 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSL 311 (752)
Q Consensus 232 ~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~ 311 (752)
.....++|.||....|+.++ .+...+ .|.+||++ +.....+.++.....+..+.|++.+.
T Consensus 207 ----------~~~S~l~WhP~~aTql~~As-~dd~~P--------viqlWDlR-~assP~k~~~~H~~GilslsWc~~D~ 266 (1049)
T KOG0307|consen 207 ----------MHCSVLAWHPDHATQLLVAS-GDDSAP--------VIQLWDLR-FASSPLKILEGHQRGILSLSWCPQDP 266 (1049)
T ss_pred ----------cceeeeeeCCCCceeeeeec-CCCCCc--------eeEeeccc-ccCCchhhhcccccceeeeccCCCCc
Confidence 11347899999988444443 433333 67788873 22334455666777788999999887
Q ss_pred eEEEeeecccCceeEEEEcCCCC
Q 004456 312 ALVNETWYKTSQTRTWLVCPGSK 334 (752)
Q Consensus 312 ~l~~~~~~~~~~~~l~~~~~~~~ 334 (752)
.++.++..+ +++..++.+++
T Consensus 267 ~lllSsgkD---~~ii~wN~~tg 286 (1049)
T KOG0307|consen 267 RLLLSSGKD---NRIICWNPNTG 286 (1049)
T ss_pred hhhhcccCC---CCeeEecCCCc
Confidence 777766333 35889998884
No 342
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=97.61 E-value=0.0093 Score=58.81 Aligned_cols=236 Identities=17% Similarity=0.116 Sum_probs=139.3
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEe-cCCc-E-EEEEecCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWV-NNST-L-LIFTIPSS 108 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~ws-pdg~-~-l~~~~~~~ 108 (752)
+++....+ +++|.-. .+++.+.+++.+|...++++.+.. .+..++|- +|.. - ++.++.+
T Consensus 107 WVSsv~~~--~~~Iltg----------sYDg~~riWd~~Gk~~~~~~Ght~-----~ik~v~~v~~n~~~~~fvsas~D- 168 (423)
T KOG0313|consen 107 WVSSVKGA--SKWILTG----------SYDGTSRIWDLKGKSIKTIVGHTG-----PIKSVAWVIKNSSSCLFVSASMD- 168 (423)
T ss_pred hhhhhccc--CceEEEe----------ecCCeeEEEecCCceEEEEecCCc-----ceeeeEEEecCCccceEEEecCC-
Confidence 66666666 7788774 567888899999988888876654 35566774 4433 2 2222110
Q ss_pred CCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCC---CccccC-Cc-cceeccccC
Q 004456 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG---TAKDFG-TP-AVYTAVEPS 183 (752)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G---~~~~l~-~~-~~~~~~~~S 183 (752)
+.-.+|.++..- +..+.. .+ ..+.++...
T Consensus 169 ----------------------------------------------qtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~ 202 (423)
T KOG0313|consen 169 ----------------------------------------------QTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVD 202 (423)
T ss_pred ----------------------------------------------ceEEEEEecCchhhhhHHhHhcccccceeEEEec
Confidence 114567777622 233332 22 788899999
Q ss_pred CCCceEEEEecccCccccccccCccccEEEEecCCceeEEecC------------CCCCCCCCc-ccCCccccccceeee
Q 004456 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCD------------LPPAEDIPV-CYNSVREGMRSISWR 250 (752)
Q Consensus 184 pDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~------------~~~~~~~~~-~~~~~~~~~~~~~ws 250 (752)
+||.+++-.+.+. .|-+|+........+.. .......|. .+.++...+.++.|+
T Consensus 203 ~sgtr~~SgS~D~-------------~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~ 269 (423)
T KOG0313|consen 203 SSGTRFCSGSWDT-------------MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWS 269 (423)
T ss_pred CCCCeEEeecccc-------------eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEc
Confidence 9999998887774 67777632222111111 111112232 233445557789999
Q ss_pred eCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEc
Q 004456 251 ADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVC 330 (752)
Q Consensus 251 pDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~ 330 (752)
+.+. +|-++ ..-.|..||+. .++....+ ..+.....+..+|..+.|+.++ ...+|.++|
T Consensus 270 d~~v--~yS~S------------wDHTIk~WDle--tg~~~~~~-~~~ksl~~i~~~~~~~Ll~~gs----sdr~irl~D 328 (423)
T KOG0313|consen 270 DATV--IYSVS------------WDHTIKVWDLE--TGGLKSTL-TTNKSLNCISYSPLSKLLASGS----SDRHIRLWD 328 (423)
T ss_pred CCCc--eEeec------------ccceEEEEEee--cccceeee-ecCcceeEeecccccceeeecC----CCCceeecC
Confidence 8433 34342 23378889983 33333333 3556777889999999888876 444688899
Q ss_pred CCCCCccceec-cccccccccCCCCCCceeeCCCCCeEEEee
Q 004456 331 PGSKDVAPRVL-FDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (752)
Q Consensus 331 ~~~~~~~~~~l-~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~ 371 (752)
+..+.+..... ..+...++- .+.|+|...++++..
T Consensus 329 PR~~~gs~v~~s~~gH~nwVs------svkwsp~~~~~~~S~ 364 (423)
T KOG0313|consen 329 PRTGDGSVVSQSLIGHKNWVS------SVKWSPTNEFQLVSG 364 (423)
T ss_pred CCCCCCceeEEeeecchhhhh------heecCCCCceEEEEE
Confidence 88874432221 111111211 156999998877765
No 343
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=97.58 E-value=0.0013 Score=67.23 Aligned_cols=146 Identities=16% Similarity=0.197 Sum_probs=102.2
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEcc-CCCCCCC------CccC--ccccccchh-------
Q 004456 591 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARS-GSYNKTL------TPFG--FQTEFRTLW------- 654 (752)
Q Consensus 591 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~-~~~~~~~------~~~~--~~~~~~~~~------- 654 (752)
+++++...++.++++|.|.|==|..+...++ ..+|++|++.++ ++.+... ..+| +......++
T Consensus 161 ~~~~~~~~~~i~~FvV~GaSKRGWTtWltaa-~D~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~a~~dY~~~gi~~~ 239 (367)
T PF10142_consen 161 EFLKKKFGVNIEKFVVTGASKRGWTTWLTAA-VDPRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSFAFQDYYNEGITQQ 239 (367)
T ss_pred HHHHhhcCCCccEEEEeCCchHhHHHHHhhc-cCcceeEEeeEEEccCCcHHHHHHHHHHhCCCCccchhhhhHhCchhh
Confidence 4445555667889999999999999998888 447888888655 2222110 0011 110000000
Q ss_pred ----hhHHHHHhcChhhhcCCCCCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHH
Q 004456 655 ----EATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVI 730 (752)
Q Consensus 655 ----~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~ 730 (752)
+-.+...-.+|+.+.++++.|-|++.|..|++.. +..+.-++..|.. +..+.++|+++|.... .+..
T Consensus 240 l~tp~f~~L~~ivDP~~Y~~rL~~PK~ii~atgDeFf~--pD~~~~y~d~L~G---~K~lr~vPN~~H~~~~----~~~~ 310 (367)
T PF10142_consen 240 LDTPEFDKLMQIVDPYSYRDRLTMPKYIINATGDEFFV--PDSSNFYYDKLPG---EKYLRYVPNAGHSLIG----SDVV 310 (367)
T ss_pred cCCHHHHHHHHhcCHHHHHHhcCccEEEEecCCCceec--cCchHHHHhhCCC---CeeEEeCCCCCcccch----HHHH
Confidence 1123345568999999999999999999999987 7888888888764 4689999999998764 6778
Q ss_pred HHHHHHHHHHhcCCCC
Q 004456 731 WETDRWLQKYCLSNTS 746 (752)
Q Consensus 731 ~~~~~fl~~~l~~~~~ 746 (752)
+.+..|+...+.+.+-
T Consensus 311 ~~l~~f~~~~~~~~~l 326 (367)
T PF10142_consen 311 QSLRAFYNRIQNGRPL 326 (367)
T ss_pred HHHHHHHHHHHcCCCC
Confidence 8899999988766543
No 344
>COG3150 Predicted esterase [General function prediction only]
Probab=97.55 E-value=0.001 Score=57.81 Aligned_cols=139 Identities=12% Similarity=0.108 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCCCCCccCccccccc-----
Q 004456 578 FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQTEFRT----- 652 (752)
Q Consensus 578 ~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~----- 652 (752)
+....++.+.++|..... ..++|+|-|.|||.|-+++.++ . +++++ +.|...+.....++......
T Consensus 41 ~p~~a~~ele~~i~~~~~------~~p~ivGssLGGY~At~l~~~~-G-irav~-~NPav~P~e~l~gylg~~en~ytg~ 111 (191)
T COG3150 41 DPQQALKELEKAVQELGD------ESPLIVGSSLGGYYATWLGFLC-G-IRAVV-FNPAVRPYELLTGYLGRPENPYTGQ 111 (191)
T ss_pred CHHHHHHHHHHHHHHcCC------CCceEEeecchHHHHHHHHHHh-C-Chhhh-cCCCcCchhhhhhhcCCCCCCCCcc
Confidence 345556555565544421 3499999999999999999988 2 44444 44443211111111100000
Q ss_pred hhhh-HHHHHhcChhhhcCCCCCC-EEE-EEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHH
Q 004456 653 LWEA-TNVYIEMSPITHANKIKKP-ILI-IHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHV 729 (752)
Q Consensus 653 ~~~~-~~~~~~~~~~~~~~~~~~P-~li-~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~ 729 (752)
.|.. .....+. .+..+..++.| .++ +.-+.|.+.. +.++.+.+..+ ...+..|++|.|.. ....
T Consensus 112 ~y~le~~hI~~l-~~~~~~~l~~p~~~~lL~qtgDEvLD--yr~a~a~y~~~-------~~~V~dgg~H~F~~---f~~~ 178 (191)
T COG3150 112 EYVLESRHIATL-CVLQFRELNRPRCLVLLSQTGDEVLD--YRQAVAYYHPC-------YEIVWDGGDHKFKG---FSRH 178 (191)
T ss_pred eEEeehhhHHHH-HHhhccccCCCcEEEeecccccHHHH--HHHHHHHhhhh-------hheeecCCCccccc---hHHh
Confidence 1100 0001110 11122333333 444 4444588866 67666665544 34556789998765 5577
Q ss_pred HHHHHHHHH
Q 004456 730 IWETDRWLQ 738 (752)
Q Consensus 730 ~~~~~~fl~ 738 (752)
++.|.+|..
T Consensus 179 l~~i~aF~g 187 (191)
T COG3150 179 LQRIKAFKG 187 (191)
T ss_pred HHHHHHHhc
Confidence 888888864
No 345
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=97.54 E-value=0.0026 Score=62.22 Aligned_cols=100 Identities=18% Similarity=0.146 Sum_probs=57.1
Q ss_pred eEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 004456 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEV 593 (752)
Q Consensus 514 P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~l 593 (752)
+.|+++|+++. ....+..++..+...++.|+.+.. .|.+...........++.+..+.+
T Consensus 1 ~~lf~~p~~gG---------------~~~~y~~la~~l~~~~~~v~~i~~---~~~~~~~~~~~si~~la~~y~~~I--- 59 (229)
T PF00975_consen 1 RPLFCFPPAGG---------------SASSYRPLARALPDDVIGVYGIEY---PGRGDDEPPPDSIEELASRYAEAI--- 59 (229)
T ss_dssp -EEEEESSTTC---------------SGGGGHHHHHHHTTTEEEEEEECS---TTSCTTSHEESSHHHHHHHHHHHH---
T ss_pred CeEEEEcCCcc---------------CHHHHHHHHHhCCCCeEEEEEEec---CCCCCCCCCCCCHHHHHHHHHHHh---
Confidence 35888998642 111122445555544477777333 333322223334556665544444
Q ss_pred HHcCCCCCCcEEEEEeChHHHHHHHHHHh---CCCceeEEEEccCC
Q 004456 594 VRRGVADPSRIAVGGHSYGAFMTAHLLAH---APHLFCCGIARSGS 636 (752)
Q Consensus 594 ~~~~~~d~~~i~l~G~S~GG~~a~~~~~~---~p~~~~~~v~~~~~ 636 (752)
++... ..++.|+|||+||.+|+.+|.+ .-..+..++++.+.
T Consensus 60 ~~~~~--~gp~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~~ 103 (229)
T PF00975_consen 60 RARQP--EGPYVLAGWSFGGILAFEMARQLEEAGEEVSRLILIDSP 103 (229)
T ss_dssp HHHTS--SSSEEEEEETHHHHHHHHHHHHHHHTT-SESEEEEESCS
T ss_pred hhhCC--CCCeeehccCccHHHHHHHHHHHHHhhhccCceEEecCC
Confidence 33221 2389999999999999999864 22347778877753
No 346
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.016 Score=60.63 Aligned_cols=105 Identities=13% Similarity=0.112 Sum_probs=63.4
Q ss_pred ccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCc
Q 004456 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQ 323 (752)
Q Consensus 244 ~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 323 (752)
++++.|..+|.+ |+.+...+ ....+++..+. +......+....+.+....|.|-.-+++.++ .
T Consensus 524 i~~vtWHrkGDY-latV~~~~---------~~~~VliHQLS--K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-----q 586 (733)
T KOG0650|consen 524 IRQVTWHRKGDY-LATVMPDS---------GNKSVLIHQLS--KRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-----Q 586 (733)
T ss_pred cceeeeecCCce-EEEeccCC---------CcceEEEEecc--cccccCchhhcCCceeEEEecCCCceEEEEe-----c
Confidence 778999999999 76665322 23356676662 1222233445566778888999888877765 3
Q ss_pred eeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeee
Q 004456 324 TRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (752)
Q Consensus 324 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~ 373 (752)
..+.++|+.... ..+.+..+...- . .++-+|.|..|++.+.+
T Consensus 587 ~~vRiYdL~kqe-lvKkL~tg~kwi-----S--~msihp~GDnli~gs~d 628 (733)
T KOG0650|consen 587 RSVRIYDLSKQE-LVKKLLTGSKWI-----S--SMSIHPNGDNLILGSYD 628 (733)
T ss_pred cceEEEehhHHH-HHHHHhcCCeee-----e--eeeecCCCCeEEEecCC
Confidence 347888876531 112222222111 0 14568899888888743
No 347
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=97.51 E-value=0.0033 Score=67.67 Aligned_cols=66 Identities=15% Similarity=0.328 Sum_probs=53.4
Q ss_pred CCEEEEEeCCCCCCCCCHHHHHHHHHHHHhC-CC-------cEEEEEeCCCCccCCcc-ccHHHHHHHHHHHHHHHh
Q 004456 674 KPILIIHGEVDDKVGLFPMQAERFFDALKGH-GA-------LSRLVLLPFEHHVYAAR-ENVMHVIWETDRWLQKYC 741 (752)
Q Consensus 674 ~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~-~~-------~~~~~~~~~~~H~~~~~-~~~~~~~~~~~~fl~~~l 741 (752)
..++++||..|..|| +..+.++++++.+. +. -+++..+||.+|+.... ....+.+..+.+|.|+-.
T Consensus 354 GKLI~~HG~aD~~I~--p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~G~ 428 (474)
T PF07519_consen 354 GKLILYHGWADPLIP--PQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVENGK 428 (474)
T ss_pred CeEEEEecCCCCccC--CCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhCCC
Confidence 679999999999999 99999999987653 21 37899999999997654 344578889999998743
No 348
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=97.47 E-value=0.0049 Score=62.74 Aligned_cols=176 Identities=11% Similarity=0.140 Sum_probs=117.1
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCc-ceeccCCCCccccccccceEEecCCcEEEEEecCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~ 110 (752)
.+....+.-...|||-+ ..+++|-|..+++++ .+.++...+. .++.+.+||-.++|+....
T Consensus 123 tvt~v~YN~~DeyiAsv----------s~gGdiiih~~~t~~~tt~f~~~sgq----svRll~ys~skr~lL~~as---- 184 (673)
T KOG4378|consen 123 TVTYVDYNNTDEYIASV----------SDGGDIIIHGTKTKQKTTTFTIDSGQ----SVRLLRYSPSKRFLLSIAS---- 184 (673)
T ss_pred eeEEEEecCCcceeEEe----------ccCCcEEEEecccCccccceecCCCC----eEEEeecccccceeeEeec----
Confidence 46667777788899987 455899999998876 4556544332 4567889999888876532
Q ss_pred CCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCC-Ccc--ccCCc-cceeccccCCCC
Q 004456 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAK--DFGTP-AVYTAVEPSPDQ 186 (752)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G-~~~--~l~~~-~~~~~~~~SpDG 186 (752)
..+.+-+||++| ... -...+ .....++|||-.
T Consensus 185 --------------------------------------------d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn 220 (673)
T KOG4378|consen 185 --------------------------------------------DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN 220 (673)
T ss_pred --------------------------------------------cCCeEEEEeccCCCcccchhhhccCCcCcceecCCc
Confidence 116788899987 222 22233 778899999999
Q ss_pred ceEEEEecccCccccccccCccccEEEEecCCcee-EEe-cCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEecc
Q 004456 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-REL-CDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (752)
Q Consensus 187 k~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l-~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~ 264 (752)
..|+++-.-. .+|++||..++.. ..| ...| ...++|+++|.+ |+.-.
T Consensus 221 e~l~vsVG~D------------kki~~yD~~s~~s~~~l~y~~P---------------lstvaf~~~G~~-L~aG~--- 269 (673)
T KOG4378|consen 221 EALLVSVGYD------------KKINIYDIRSQASTDRLTYSHP---------------LSTVAFSECGTY-LCAGN--- 269 (673)
T ss_pred cceEEEeccc------------ceEEEeecccccccceeeecCC---------------cceeeecCCceE-EEeec---
Confidence 8888864432 4899999886532 222 2222 336899999986 44332
Q ss_pred CCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCC
Q 004456 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDS 310 (752)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg 310 (752)
.+++|+.+|+... ......+......+..++|-|--
T Consensus 270 ---------s~G~~i~YD~R~~-k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 270 ---------SKGELIAYDMRST-KAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ---------CCceEEEEecccC-CCCceEeeecccceeEEEeeecc
Confidence 5678999998421 12233455666778888886643
No 349
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=97.47 E-value=0.0091 Score=56.68 Aligned_cols=220 Identities=16% Similarity=0.127 Sum_probs=124.8
Q ss_pred CcceeEEeecCCCCCCCCceeecC---CCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcce----
Q 004456 3 FFTGIGIHRLLPDDSLGPEKEVHG---YPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK---- 75 (752)
Q Consensus 3 ~~~~i~~~~~~~~~~~g~~~~i~~---~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~---- 75 (752)
+.+-|.+..++. +....+.. .+.| .+...+-||-.+.|.-++..+-.....-....||-++-.-++..
T Consensus 38 ~dNqVhll~~d~----e~s~l~skvf~h~ag-Evw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tl 112 (370)
T KOG1007|consen 38 EDNQVHLLRLDS----EGSELLSKVFFHHAG-EVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTL 112 (370)
T ss_pred CcceeEEEEecC----ccchhhhhhhhcCCc-ceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchh
Confidence 345566666655 22222211 2233 47788889988888777652111111123456777764444421
Q ss_pred -eccCCCCccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhh
Q 004456 76 -PLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYY 154 (752)
Q Consensus 76 -~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 154 (752)
++...+...+. .+..+.|-|++..|+....
T Consensus 113 E~v~~Ldteavg-~i~cvew~Pns~klasm~d------------------------------------------------ 143 (370)
T KOG1007|consen 113 ECVASLDTEAVG-KINCVEWEPNSDKLASMDD------------------------------------------------ 143 (370)
T ss_pred hHhhcCCHHHhC-ceeeEEEcCCCCeeEEecc------------------------------------------------
Confidence 22122211111 2457799999999987621
Q ss_pred cccEEEEEcc-CC-C-ccccCCc------cceeccccCC--CCceEEEEecccCccccccccCccccEEEEecCCceeEE
Q 004456 155 TTAQLVLGSL-DG-T-AKDFGTP------AVYTAVEPSP--DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223 (752)
Q Consensus 155 ~~~~i~~~~~-~G-~-~~~l~~~------~~~~~~~~Sp--DGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 223 (752)
..|-++++ ++ + ...+... -...+-+||| ||+.++.+... .++.||+.+...
T Consensus 144 --n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~--------------tl~~~D~RT~~~-- 205 (370)
T KOG1007|consen 144 --NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDS--------------TLQFWDLRTMKK-- 205 (370)
T ss_pred --CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCC--------------cEEEEEccchhh--
Confidence 45666776 44 3 1112111 3456889999 89999988544 688899875421
Q ss_pred ecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCC-CeEEeeccccee
Q 004456 224 LCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILHKLDLRFR 302 (752)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~l~~~~~~~~ 302 (752)
......+ ..-.++++-|.|+-+. ++.++. ..+.+.+||.. ..+. .+.+.....-+.
T Consensus 206 ~~sI~dA---------Hgq~vrdlDfNpnkq~-~lvt~g-----------DdgyvriWD~R--~tk~pv~el~~HsHWvW 262 (370)
T KOG1007|consen 206 NNSIEDA---------HGQRVRDLDFNPNKQH-ILVTCG-----------DDGYVRIWDTR--KTKFPVQELPGHSHWVW 262 (370)
T ss_pred hcchhhh---------hcceeeeccCCCCceE-EEEEcC-----------CCccEEEEecc--CCCccccccCCCceEEE
Confidence 1111111 1122678999999987 444431 34478888874 3232 334555566678
Q ss_pred eeeeecCCceEEEee
Q 004456 303 SVSWCDDSLALVNET 317 (752)
Q Consensus 303 ~~~~spDg~~l~~~~ 317 (752)
.+.|.|--..|+.+.
T Consensus 263 ~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 263 AVRFNPEHDQLILSG 277 (370)
T ss_pred EEEecCccceEEEec
Confidence 888888887777765
No 350
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.45 E-value=0.0092 Score=60.80 Aligned_cols=225 Identities=10% Similarity=0.090 Sum_probs=137.9
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (752)
.+....|-.||+.+|.. +..+.+-|+|.++....+....... .+....|+|++..++....+
T Consensus 70 ~v~s~~fR~DG~LlaaG----------D~sG~V~vfD~k~r~iLR~~~ah~a----pv~~~~f~~~d~t~l~s~sD---- 131 (487)
T KOG0310|consen 70 VVYSVDFRSDGRLLAAG----------DESGHVKVFDMKSRVILRQLYAHQA----PVHVTKFSPQDNTMLVSGSD---- 131 (487)
T ss_pred ceeEEEeecCCeEEEcc----------CCcCcEEEeccccHHHHHHHhhccC----ceeEEEecccCCeEEEecCC----
Confidence 37788999999998883 4456777777554333222222221 24456899988877665321
Q ss_pred CCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCC-Ccc-ccCCc-cceeccccCCCCce
Q 004456 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAK-DFGTP-AVYTAVEPSPDQKY 188 (752)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G-~~~-~l~~~-~~~~~~~~SpDGk~ 188 (752)
...+..+++++ ..+ .+..+ ..+...+|+|-..+
T Consensus 132 --------------------------------------------d~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~h 167 (487)
T KOG0310|consen 132 --------------------------------------------DKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDH 167 (487)
T ss_pred --------------------------------------------CceEEEEEcCCcEEEEEecCCcceeEeeccccCCCe
Confidence 13455666744 322 34445 78889999999999
Q ss_pred EEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCC
Q 004456 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (752)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~ 268 (752)
|+++..- .+.|.+||..+...+.+.-. .+.| +..+-+-|.|.. ++.+
T Consensus 168 ivvtGsY------------Dg~vrl~DtR~~~~~v~eln---hg~p---------Ve~vl~lpsgs~-iasA-------- 214 (487)
T KOG0310|consen 168 IVVTGSY------------DGKVRLWDTRSLTSRVVELN---HGCP---------VESVLALPSGSL-IASA-------- 214 (487)
T ss_pred EEEecCC------------CceEEEEEeccCCceeEEec---CCCc---------eeeEEEcCCCCE-EEEc--------
Confidence 9987433 36899999886643222211 1222 667888999885 4444
Q ss_pred ccccCccceEEeccCCCCCCCC-CeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccc
Q 004456 269 NVEVSPRDIIYTQPAEPAEGEK-PEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE 347 (752)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 347 (752)
..+.+-+||+- .|+. ...+....-.++++.+..|+..|+.++- ..++-+++..+ -+.+....+.
T Consensus 215 -----gGn~vkVWDl~--~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sL----D~~VKVfd~t~----~Kvv~s~~~~ 279 (487)
T KOG0310|consen 215 -----GGNSVKVWDLT--TGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSL----DRHVKVFDTTN----YKVVHSWKYP 279 (487)
T ss_pred -----CCCeEEEEEec--CCceehhhhhcccceEEEEEeecCCceEeeccc----ccceEEEEccc----eEEEEeeecc
Confidence 34478889982 1322 2223346678899999999998888762 23466666433 1333332222
Q ss_pred cccCCCCCCceeeCCCCCeEEEee
Q 004456 348 NVYSDPGSPMMTRTSTGTNVIAKI 371 (752)
Q Consensus 348 ~~~~~~~~p~~~~s~dg~~l~~~~ 371 (752)
. ..-+++.|||++.++..-
T Consensus 280 ~-----pvLsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 280 G-----PVLSIAVSPDDQTVVIGM 298 (487)
T ss_pred c-----ceeeEEecCCCceEEEec
Confidence 1 112356789998887765
No 351
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.45 E-value=0.0015 Score=64.03 Aligned_cols=115 Identities=13% Similarity=0.140 Sum_probs=78.7
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (752)
+.-....++++.+|||-.. ...++|+++|+.+=++.-...... ..+..++++|||..|+-++.
T Consensus 131 gl~AlS~n~~n~ylAyp~s--------~t~GdV~l~d~~nl~~v~~I~aH~----~~lAalafs~~G~llATASe----- 193 (391)
T KOG2110|consen 131 GLCALSPNNANCYLAYPGS--------TTSGDVVLFDTINLQPVNTINAHK----GPLAALAFSPDGTLLATASE----- 193 (391)
T ss_pred ceEeeccCCCCceEEecCC--------CCCceEEEEEcccceeeeEEEecC----CceeEEEECCCCCEEEEecc-----
Confidence 4556666777779999533 335789999977655433332222 14678899999999997643
Q ss_pred CCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CC----CccccCCccceeccccCCCC
Q 004456 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG----TAKDFGTPAVYTAVEPSPDQ 186 (752)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G----~~~~l~~~~~~~~~~~SpDG 186 (752)
++.-|.++.+ +| +.++-+....+.+++||||+
T Consensus 194 -------------------------------------------KGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds 230 (391)
T KOG2110|consen 194 -------------------------------------------KGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS 230 (391)
T ss_pred -------------------------------------------CceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC
Confidence 1245666666 77 33444444788899999999
Q ss_pred ceEEEEecccCccccccccCccccEEEEecCCc
Q 004456 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (752)
Q Consensus 187 k~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (752)
++|..++... .+.++.++..
T Consensus 231 ~~L~~sS~Te-------------TVHiFKL~~~ 250 (391)
T KOG2110|consen 231 QFLAASSNTE-------------TVHIFKLEKV 250 (391)
T ss_pred CeEEEecCCC-------------eEEEEEeccc
Confidence 9999987764 6788777643
No 352
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=97.43 E-value=0.0057 Score=60.20 Aligned_cols=139 Identities=12% Similarity=0.191 Sum_probs=88.6
Q ss_pred cEEEEEcc-CC----CccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeE-EecCCCC
Q 004456 157 AQLVLGSL-DG----TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPP 229 (752)
Q Consensus 157 ~~i~~~~~-~G----~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~ 229 (752)
..|+++.. +| ..+.++.+ ..+..++|||.-+.++++..-. +.|.+||...+..+ .+....
T Consensus 234 ~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~D------------gsIrIWDiRs~~~~~~~~~kA- 300 (440)
T KOG0302|consen 234 KGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCD------------GSIRIWDIRSGPKKAAVSTKA- 300 (440)
T ss_pred cceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecC------------ceEEEEEecCCCccceeEeec-
Confidence 56777777 55 33455556 7889999999999998876553 47999999876322 222111
Q ss_pred CCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeE-Eeecccceeeeeeec
Q 004456 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFRSVSWCD 308 (752)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~~~~~~~~~~~sp 308 (752)
...-+..++|+.+-.. |++-. ..+.+.++|+..++.+.+.. .......+.++.|+|
T Consensus 301 ----------h~sDVNVISWnr~~~l-LasG~------------DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p 357 (440)
T KOG0302|consen 301 ----------HNSDVNVISWNRREPL-LASGG------------DDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHP 357 (440)
T ss_pred ----------cCCceeeEEccCCcce-eeecC------------CCceEEEEEhhhccCCCcceeEEeccCCeeEEEecc
Confidence 1112556888876552 33332 45578889987666665544 445677899999999
Q ss_pred CCceEEEeeecccCceeEEEEcCC
Q 004456 309 DSLALVNETWYKTSQTRTWLVCPG 332 (752)
Q Consensus 309 Dg~~l~~~~~~~~~~~~l~~~~~~ 332 (752)
....++..+..+ .+..||-+.+.
T Consensus 358 ~e~s~iaasg~D-~QitiWDlsvE 380 (440)
T KOG0302|consen 358 HEDSVIAASGED-NQITIWDLSVE 380 (440)
T ss_pred ccCceEEeccCC-CcEEEEEeecc
Confidence 877666655333 33345544443
No 353
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.43 E-value=0.029 Score=53.55 Aligned_cols=238 Identities=12% Similarity=0.058 Sum_probs=127.0
Q ss_pred CCceeecCCCCCceeceeEecCCCC-eEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecC
Q 004456 19 GPEKEVHGYPDGAKINFVSWSPDGK-RIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN 97 (752)
Q Consensus 19 g~~~~i~~~~~~~~~~~~~~SPDG~-~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspd 97 (752)
|+...-+.+|. +.....++|--+ .+||..+. +.-.++.|..+.+.-++....+.+ ..++.-.||||
T Consensus 58 Gk~v~~~~lpa--R~Hgi~~~p~~~ravafARrP---------Gtf~~vfD~~~~~~pv~~~s~~~R--HfyGHGvfs~d 124 (366)
T COG3490 58 GKIVFATALPA--RGHGIAFHPALPRAVAFARRP---------GTFAMVFDPNGAQEPVTLVSQEGR--HFYGHGVFSPD 124 (366)
T ss_pred Cceeeeeeccc--ccCCeecCCCCcceEEEEecC---------CceEEEECCCCCcCcEEEecccCc--eeecccccCCC
Confidence 44443344554 367788888764 56666542 256778888876644433222211 13556689999
Q ss_pred CcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCCCccccC---Cc
Q 004456 98 STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFG---TP 174 (752)
Q Consensus 98 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G~~~~l~---~~ 174 (752)
|++||.+-.+... ..+-|-++|..-...++. .+
T Consensus 125 G~~LYATEndfd~--------------------------------------------~rGViGvYd~r~~fqrvgE~~t~ 160 (366)
T COG3490 125 GRLLYATENDFDP--------------------------------------------NRGVIGVYDAREGFQRVGEFSTH 160 (366)
T ss_pred CcEEEeecCCCCC--------------------------------------------CCceEEEEecccccceecccccC
Confidence 9988876222111 115666777633333332 22
Q ss_pred -cceeccccCCCCceEEEEecccC----cccccc-ccCccccEEEEecCCceeEEecCCCCCCCCCcccCCcccccccee
Q 004456 175 -AVYTAVEPSPDQKYVLITSMHRP----YSYKVP-CARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSIS 248 (752)
Q Consensus 175 -~~~~~~~~SpDGk~l~~~~~~~~----~~~~~~-~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 248 (752)
-+...+.|.+||+.|++....-+ +..... .......+.+.|..+++..+-...+.. -....++.+.
T Consensus 161 GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~--------l~~lSiRHld 232 (366)
T COG3490 161 GIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPAS--------LRQLSIRHLD 232 (366)
T ss_pred CcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchh--------hhhcceeeee
Confidence 56678999999999998755221 111100 112234566677444433221112110 0123478899
Q ss_pred eeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEe-------ecccceeeeeeecCCceEEEeeeccc
Q 004456 249 WRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-------KLDLRFRSVSWCDDSLALVNETWYKT 321 (752)
Q Consensus 249 wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~spDg~~l~~~~~~~~ 321 (752)
..+||+ ++|.+...+...+ .--|.-.-. .++..+.+. .....+.+++..-+...++.++...
T Consensus 233 ~g~dgt--vwfgcQy~G~~~d-----~ppLvg~~~---~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~G- 301 (366)
T COG3490 233 IGRDGT--VWFGCQYRGPRND-----LPPLVGHFR---KGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRG- 301 (366)
T ss_pred eCCCCc--EEEEEEeeCCCcc-----CCcceeecc---CCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCC-
Confidence 999998 7777665443221 111222222 333333222 1223456677766666666665333
Q ss_pred CceeEEEEcCCCC
Q 004456 322 SQTRTWLVCPGSK 334 (752)
Q Consensus 322 ~~~~l~~~~~~~~ 334 (752)
+...++|.+++
T Consensus 302 --N~~vi~da~tG 312 (366)
T COG3490 302 --NRAVIWDAATG 312 (366)
T ss_pred --CeEEEEEcCCC
Confidence 35778888885
No 354
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=97.39 E-value=0.024 Score=57.36 Aligned_cols=157 Identities=10% Similarity=0.066 Sum_probs=96.1
Q ss_pred cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCC
Q 004456 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (752)
Q Consensus 175 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~ 254 (752)
..+..++|.|--+.|+-...+. ..+.+||+.+. ....... ..+....+..++|+|-+.
T Consensus 228 ~~VeDV~~h~~h~~lF~sv~dd------------~~L~iwD~R~~-~~~~~~~---------~~ah~~~vn~~~fnp~~~ 285 (422)
T KOG0264|consen 228 DVVEDVAWHPLHEDLFGSVGDD------------GKLMIWDTRSN-TSKPSHS---------VKAHSAEVNCVAFNPFNE 285 (422)
T ss_pred cceehhhccccchhhheeecCC------------CeEEEEEcCCC-CCCCccc---------ccccCCceeEEEeCCCCC
Confidence 5677999999998887765553 47899998852 1111100 011122356789999888
Q ss_pred ceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCC
Q 004456 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (752)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 334 (752)
. |+-+. +..+.+.++|++... ..+..+......+..+.|||....++.++..+ .+|.++|+..-
T Consensus 286 ~-ilAT~-----------S~D~tV~LwDlRnL~-~~lh~~e~H~dev~~V~WSPh~etvLASSg~D---~rl~vWDls~i 349 (422)
T KOG0264|consen 286 F-ILATG-----------SADKTVALWDLRNLN-KPLHTFEGHEDEVFQVEWSPHNETVLASSGTD---RRLNVWDLSRI 349 (422)
T ss_pred c-eEEec-----------cCCCcEEEeechhcc-cCceeccCCCcceEEEEeCCCCCceeEecccC---CcEEEEecccc
Confidence 6 33332 134478889986543 24455666777899999999998888776333 34666665532
Q ss_pred Cc----------cceeccccccccccCCCCCCceeeCCCCCeEEEeeee
Q 004456 335 DV----------APRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (752)
Q Consensus 335 ~~----------~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~ 373 (752)
.. .+..++.+..+. .....|+|.|...+++.+..+
T Consensus 350 g~eq~~eda~dgppEllF~HgGH~----~kV~DfsWnp~ePW~I~Svae 394 (422)
T KOG0264|consen 350 GEEQSPEDAEDGPPELLFIHGGHT----AKVSDFSWNPNEPWTIASVAE 394 (422)
T ss_pred ccccChhhhccCCcceeEEecCcc----cccccccCCCCCCeEEEEecC
Confidence 11 122233333222 123457899999988888743
No 355
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=97.37 E-value=0.0048 Score=58.59 Aligned_cols=149 Identities=13% Similarity=0.129 Sum_probs=93.4
Q ss_pred CCcceeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCC---eEEEeeccccccccccCcceEEEEEcccCcceecc
Q 004456 2 PFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGK---RIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF 78 (752)
Q Consensus 2 ~~~~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~---~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt 78 (752)
||.+.+.+++.+. -++--.-.++ ..+..-+|||-.. .||-. ....++.+.|+++|.-....
T Consensus 121 SFDhtlKVWDtnT----lQ~a~~F~me--~~VYshamSp~a~sHcLiA~g----------tr~~~VrLCDi~SGs~sH~L 184 (397)
T KOG4283|consen 121 SFDHTLKVWDTNT----LQEAVDFKME--GKVYSHAMSPMAMSHCLIAAG----------TRDVQVRLCDIASGSFSHTL 184 (397)
T ss_pred cccceEEEeeccc----ceeeEEeecC--ceeehhhcChhhhcceEEEEe----------cCCCcEEEEeccCCcceeee
Confidence 5677778888755 3222222233 2577888999765 23332 45589999999999976655
Q ss_pred CCCCccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcc-c
Q 004456 79 ESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTT-A 157 (752)
Q Consensus 79 ~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~ 157 (752)
.+... ++....|||..++++++......- +.|+..+. +
T Consensus 185 sGHr~----~vlaV~Wsp~~e~vLatgsaDg~i-------------------------------------rlWDiRrasg 223 (397)
T KOG4283|consen 185 SGHRD----GVLAVEWSPSSEWVLATGSADGAI-------------------------------------RLWDIRRASG 223 (397)
T ss_pred ccccC----ceEEEEeccCceeEEEecCCCceE-------------------------------------EEEEeecccc
Confidence 44432 577889999999999874321110 22222222 4
Q ss_pred EEEEEcc-CCCcccc----CCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCce
Q 004456 158 QLVLGSL-DGTAKDF----GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (752)
Q Consensus 158 ~i~~~~~-~G~~~~l----~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (752)
-+.++|. +++.-++ +.+ +-+.+++|+.||++++....+. .+.+|+...+.
T Consensus 224 cf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~-------------r~r~wn~~~G~ 279 (397)
T KOG4283|consen 224 CFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD-------------RIRVWNMESGR 279 (397)
T ss_pred eeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc-------------ceEEeecccCc
Confidence 4555666 5422222 122 6788999999999998875553 78888877654
No 356
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=97.36 E-value=0.01 Score=57.94 Aligned_cols=220 Identities=15% Similarity=0.186 Sum_probs=113.0
Q ss_pred EcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCC
Q 004456 488 QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPII 567 (752)
Q Consensus 488 ~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~ 567 (752)
.+.-| .+.+.++--.. +++|++|-.|--|.+..+ .|..+............|.++.++. ++.
T Consensus 5 ~t~~G-~v~V~v~G~~~------~~kp~ilT~HDvGlNh~s----------cF~~ff~~~~m~~i~~~f~i~Hi~a-PGq 66 (283)
T PF03096_consen 5 ETPYG-SVHVTVQGDPK------GNKPAILTYHDVGLNHKS----------CFQGFFNFEDMQEILQNFCIYHIDA-PGQ 66 (283)
T ss_dssp EETTE-EEEEEEESS--------TTS-EEEEE--TT--HHH----------HCHHHHCSHHHHHHHTTSEEEEEE--TTT
T ss_pred ccCce-EEEEEEEecCC------CCCceEEEeccccccchH----------HHHHHhcchhHHHHhhceEEEEEeC-CCC
Confidence 33344 67777774332 247999999985432110 1222222233344567788888543 233
Q ss_pred CCCCCCCCch----hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCC----
Q 004456 568 GEGDKLPNDR----FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK---- 639 (752)
Q Consensus 568 g~g~~~~~~~----~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~---- 639 (752)
..|....+.. ..+++.+++..+++++. -..+.-+|--.|+++-.++|..+|+++.+.|++.+....
T Consensus 67 e~ga~~~p~~y~yPsmd~LAe~l~~Vl~~f~------lk~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~gw~ 140 (283)
T PF03096_consen 67 EEGAATLPEGYQYPSMDQLAEMLPEVLDHFG------LKSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAAGWM 140 (283)
T ss_dssp STT-----TT-----HHHHHCTHHHHHHHHT---------EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HH
T ss_pred CCCcccccccccccCHHHHHHHHHHHHHhCC------ccEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCccHH
Confidence 3343333332 24455566666666652 246999999999999999999999999999999986431
Q ss_pred ----------CCCccCcccccc--chh------------hhHHHH----H-hcCh----------------hhhcCCCCC
Q 004456 640 ----------TLTPFGFQTEFR--TLW------------EATNVY----I-EMSP----------------ITHANKIKK 674 (752)
Q Consensus 640 ----------~~~~~~~~~~~~--~~~------------~~~~~~----~-~~~~----------------~~~~~~~~~ 674 (752)
.+...++..... ..| +.-+.| . ..+| ........+
T Consensus 141 Ew~~~K~~~~~L~~~gmt~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~~~c 220 (283)
T PF03096_consen 141 EWFYQKLSSWLLYSYGMTSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPSLGC 220 (283)
T ss_dssp HHHHHHHH-------CTTS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTTCCS
T ss_pred HHHHHHHhcccccccccccchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCCCCC
Confidence 111111111000 000 000001 0 0111 111234569
Q ss_pred CEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHH
Q 004456 675 PILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 738 (752)
Q Consensus 675 P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~ 738 (752)
|+|++.|...+. ...+.++..+|.. ....+..++++|-... .+.+......+.=|+.
T Consensus 221 ~vLlvvG~~Sp~----~~~vv~~ns~Ldp--~~ttllkv~dcGglV~-eEqP~klaea~~lFlQ 277 (283)
T PF03096_consen 221 PVLLVVGDNSPH----VDDVVEMNSKLDP--TKTTLLKVADCGGLVL-EEQPGKLAEAFKLFLQ 277 (283)
T ss_dssp -EEEEEETTSTT----HHHHHHHHHHS-C--CCEEEEEETT-TT-HH-HH-HHHHHHHHHHHHH
T ss_pred CeEEEEecCCcc----hhhHHHHHhhcCc--ccceEEEecccCCccc-ccCcHHHHHHHHHHHc
Confidence 999999999977 6677788887743 4678999999866443 4556555555555554
No 357
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.35 E-value=0.0093 Score=57.56 Aligned_cols=221 Identities=7% Similarity=0.033 Sum_probs=122.9
Q ss_pred cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCcee-EEecCCCCCCCCCcccCCccccccceeeeeCC
Q 004456 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (752)
Q Consensus 175 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG 253 (752)
+.+..-+|++|+..|++..... ++.+|...+.+. +....... ....+..+-|+|.+
T Consensus 11 ~pitchAwn~drt~iAv~~~~~-------------evhiy~~~~~~~w~~~htls~----------Hd~~vtgvdWap~s 67 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNH-------------EVHIYSMLGADLWEPAHTLSE----------HDKIVTGVDWAPKS 67 (361)
T ss_pred CceeeeeecCCCceEEeccCCc-------------eEEEEEecCCCCceeceehhh----------hCcceeEEeecCCC
Confidence 5667789999999999987664 788887776652 22211111 11124568999999
Q ss_pred CceEEEEEeccCCCCccccCccceEEeccCCCCCCCC---CeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEc
Q 004456 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK---PEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVC 330 (752)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~ 330 (752)
.+ |+-.+.. + .-|++... +++. ...|.+.+.....+.|||.++.++..+.. ....++.+.
T Consensus 68 nr-Ivtcs~d-----------r-nayVw~~~--~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSga--r~isVcy~E 130 (361)
T KOG1523|consen 68 NR-IVTCSHD-----------R-NAYVWTQP--SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGA--RLISVCYYE 130 (361)
T ss_pred Cc-eeEccCC-----------C-CccccccC--CCCeeccceeEEEeccceeeEeecCcCceEEeccCc--cEEEEEEEe
Confidence 88 7766432 1 23444331 2222 23466788888999999999999887622 122344444
Q ss_pred CCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEE
Q 004456 331 PGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERI 410 (752)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l 410 (752)
-+.. -............ ..-.+.|-|++-.|+..+ +++.-.+++ .|+-+++......-
T Consensus 131 ~ENd-WWVsKhikkPirS-----tv~sldWhpnnVLlaaGs----~D~k~rVfS------------ayIK~Vdekpap~p 188 (361)
T KOG1523|consen 131 QEND-WWVSKHIKKPIRS-----TVTSLDWHPNNVLLAAGS----TDGKCRVFS------------AYIKGVDEKPAPTP 188 (361)
T ss_pred cccc-eehhhhhCCcccc-----ceeeeeccCCcceecccc----cCcceeEEE------------EeeeccccCCCCCC
Confidence 3221 1001111111111 111256888887666665 223333322 56666665544444
Q ss_pred eeccchhhhhce---eeeecCCcceecccCCCEEEEEEecCCCCcEEEEEECCCC
Q 004456 411 WESNREKYFETA---VALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLK 462 (752)
Q Consensus 411 ~~~~~~~~~~~~---~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~~g 462 (752)
|..+.+ +.... ....+..+...|||+|..|.|+..+.. ++..|..+.
T Consensus 189 Wgsk~P-FG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~----v~~~da~~p 238 (361)
T KOG1523|consen 189 WGSKMP-FGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDST----VSFVDAAGP 238 (361)
T ss_pred CccCCc-HHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCc----eEEeecCCC
Confidence 554433 11111 111233456899999999999865433 777775543
No 358
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.34 E-value=0.0056 Score=64.53 Aligned_cols=57 Identities=14% Similarity=0.257 Sum_probs=42.4
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEE
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~ 103 (752)
.+...+|-|||.+|..+ .+..|+++|...|...+-...... .|-..+||.||+.++.
T Consensus 14 ci~d~afkPDGsqL~lA-----------Ag~rlliyD~ndG~llqtLKgHKD----tVycVAys~dGkrFAS 70 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA-----------AGSRLLVYDTSDGTLLQPLKGHKD----TVYCVAYAKDGKRFAS 70 (1081)
T ss_pred chheeEECCCCceEEEe-----------cCCEEEEEeCCCcccccccccccc----eEEEEEEccCCceecc
Confidence 68889999999999884 347899999876664443333221 4667899999998764
No 359
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=97.32 E-value=0.026 Score=53.83 Aligned_cols=130 Identities=8% Similarity=0.072 Sum_probs=78.2
Q ss_pred ccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccc
Q 004456 168 AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRS 246 (752)
Q Consensus 168 ~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 246 (752)
.++|.-+ ..+..++|+.+|..++.+-... +.+.++|+...+...+.-.......| ...
T Consensus 189 kTQLIAHDKEV~DIaf~~~s~~~FASvgaD------------GSvRmFDLR~leHSTIIYE~p~~~~p---------LlR 247 (364)
T KOG0290|consen 189 KTQLIAHDKEVYDIAFLKGSRDVFASVGAD------------GSVRMFDLRSLEHSTIIYEDPSPSTP---------LLR 247 (364)
T ss_pred eeEEEecCcceeEEEeccCccceEEEecCC------------CcEEEEEecccccceEEecCCCCCCc---------cee
Confidence 3455555 8899999999888886654443 47888898876654432222111111 234
Q ss_pred eeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeE
Q 004456 247 ISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRT 326 (752)
Q Consensus 247 ~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l 326 (752)
++|++.--+.++-.. .....+.++|+. ........|....+.+..++|.|.+..-+++..++. ..
T Consensus 248 LswnkqDpnymATf~-----------~dS~~V~iLDiR-~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~---qa 312 (364)
T KOG0290|consen 248 LSWNKQDPNYMATFA-----------MDSNKVVILDIR-VPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDC---QA 312 (364)
T ss_pred eccCcCCchHHhhhh-----------cCCceEEEEEec-CCCcceehhhcCcccccceEecCCCCceeeecCCcc---eE
Confidence 666665544222221 233367777873 122233446677888999999999888888774443 35
Q ss_pred EEEcCCC
Q 004456 327 WLVCPGS 333 (752)
Q Consensus 327 ~~~~~~~ 333 (752)
.++|+..
T Consensus 313 liWDl~q 319 (364)
T KOG0290|consen 313 LIWDLQQ 319 (364)
T ss_pred EEEeccc
Confidence 5566654
No 360
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=97.31 E-value=0.0024 Score=68.70 Aligned_cols=142 Identities=11% Similarity=0.032 Sum_probs=81.2
Q ss_pred CcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCC---CchhHHHHHhCCcEEEecCCCCCCC
Q 004456 492 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGM---TPTSSLIFLARRFAVLAGPSIPIIG 568 (752)
Q Consensus 492 g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~G~~v~~~~~~~~~g 568 (752)
+..+..+++.+.. .+ ...|+||+++|||.-+.-.......+|...... .......+.+....++. +..-+.|
T Consensus 60 ~~~lFyw~~~s~~-~~---~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~~~~l~i-DqP~G~G 134 (462)
T PTZ00472 60 DKHYFYWAFGPRN-GN---PEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNEAYVIYV-DQPAGVG 134 (462)
T ss_pred CceEEEEEEEcCC-CC---CCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccccccCeEEE-eCCCCcC
Confidence 4578888887654 22 237999999999865422211111222221110 00111123444444444 4433455
Q ss_pred CCCCCCC--chhHHHHHHHHHHHHHHHHH-cCCCCCCcEEEEEeChHHHHHHHHHHhC----------CCceeEEEEccC
Q 004456 569 EGDKLPN--DRFVEQLVSSAEAAVEEVVR-RGVADPSRIAVGGHSYGAFMTAHLLAHA----------PHLFCCGIARSG 635 (752)
Q Consensus 569 ~g~~~~~--~~~~~~~~~d~~~~~~~l~~-~~~~d~~~i~l~G~S~GG~~a~~~~~~~----------p~~~~~~v~~~~ 635 (752)
++..... ........+|+.++++.+.+ .+.....++.|+|+||||..+..++.+- .-.++++++..|
T Consensus 135 ~S~~~~~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGNg 214 (462)
T PTZ00472 135 FSYADKADYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGNG 214 (462)
T ss_pred cccCCCCCCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEecc
Confidence 5443222 12235667888888865544 3444567899999999999988877541 124788888888
Q ss_pred CCC
Q 004456 636 SYN 638 (752)
Q Consensus 636 ~~~ 638 (752)
+.+
T Consensus 215 ~~d 217 (462)
T PTZ00472 215 LTD 217 (462)
T ss_pred ccC
Confidence 765
No 361
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.31 E-value=0.021 Score=52.76 Aligned_cols=194 Identities=13% Similarity=0.131 Sum_probs=112.9
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (752)
-++..+|.-||+|.+-.. ....|.+++...|...+--.+.++ .+....-+.|...++-- .
T Consensus 19 aV~avryN~dGnY~ltcG----------sdrtvrLWNp~rg~liktYsghG~----EVlD~~~s~Dnskf~s~----G-- 78 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCG----------SDRTVRLWNPLRGALIKTYSGHGH----EVLDAALSSDNSKFASC----G-- 78 (307)
T ss_pred ceEEEEEccCCCEEEEcC----------CCceEEeecccccceeeeecCCCc----eeeeccccccccccccC----C--
Confidence 488899999999987652 335677777776664443333322 34555667776666532 1
Q ss_pred CCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CC-CccccCCc-cceeccccCCCCce
Q 004456 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKY 188 (752)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G-~~~~l~~~-~~~~~~~~SpDGk~ 188 (752)
....+++||+ +| ..+++..+ +.+..+.|..+..-
T Consensus 79 -------------------------------------------gDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSV 115 (307)
T KOG0316|consen 79 -------------------------------------------GDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSV 115 (307)
T ss_pred -------------------------------------------CCceEEEEEcccCeeeeecccccceeeEEEecCcceE
Confidence 1257999999 88 55666666 88999999988776
Q ss_pred EEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCC
Q 004456 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (752)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~ 268 (752)
|+-.+.+ ..+.+||-.+.....+...... ..++..+.. .+.. +...
T Consensus 116 v~SgsfD-------------~s~r~wDCRS~s~ePiQildea----------~D~V~Si~v--~~he--IvaG------- 161 (307)
T KOG0316|consen 116 VASGSFD-------------SSVRLWDCRSRSFEPIQILDEA----------KDGVSSIDV--AEHE--IVAG------- 161 (307)
T ss_pred EEecccc-------------ceeEEEEcccCCCCccchhhhh----------cCceeEEEe--cccE--EEee-------
Confidence 6665555 4789999876644333222111 011111111 1221 1111
Q ss_pred ccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCC
Q 004456 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (752)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 334 (752)
+-.+.+..+|+. .|... .--....+..+.+|+||+.++.+. -.+.|.++|-.++
T Consensus 162 ----S~DGtvRtydiR--~G~l~--sDy~g~pit~vs~s~d~nc~La~~----l~stlrLlDk~tG 215 (307)
T KOG0316|consen 162 ----SVDGTVRTYDIR--KGTLS--SDYFGHPITSVSFSKDGNCSLASS----LDSTLRLLDKETG 215 (307)
T ss_pred ----ccCCcEEEEEee--cceee--hhhcCCcceeEEecCCCCEEEEee----ccceeeecccchh
Confidence 012234444442 11110 012234577889999999988877 3345888887774
No 362
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=97.31 E-value=0.00037 Score=77.97 Aligned_cols=131 Identities=21% Similarity=0.191 Sum_probs=81.9
Q ss_pred EEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCC-CCCCCCCC
Q 004456 494 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI-PIIGEGDK 572 (752)
Q Consensus 494 ~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~-~~~g~g~~ 572 (752)
-+..-+|.|.....+ + +|++|++|||++..++.. .+. .......+..+..+|+.+++| +..|..-.
T Consensus 96 CLylNV~tp~~~~~~--~-~pV~V~iHGG~~~~gs~~--------~~~--~~~~~~~~~~~~VVvVt~~YRLG~lGF~st 162 (545)
T KOG1516|consen 96 CLYLNVYTPQGCSES--K-LPVMVYIHGGGFQFGSAS--------SFE--IISPAYVLLLKDVVVVTINYRLGPLGFLST 162 (545)
T ss_pred CceEEEeccCCCccC--C-CCEEEEEeCCceeecccc--------chh--hcCchhccccCCEEEEEecccceeceeeec
Confidence 477788888764322 2 899999999976543322 110 011122334556777776664 33332111
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCceeEEEEccCCC
Q 004456 573 LPNDRFVEQLVSSAEAAVEEVVRR---GVADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSY 637 (752)
Q Consensus 573 ~~~~~~~~~~~~d~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~~~~~--p~~~~~~v~~~~~~ 637 (752)
..........+.|...|++|+++. -.-|+++|.|+|||.||..+..++... ..+|..+|.++|..
T Consensus 163 ~d~~~~gN~gl~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~ 232 (545)
T KOG1516|consen 163 GDSAAPGNLGLFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNA 232 (545)
T ss_pred CCCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcccc
Confidence 111112344466999999999885 125899999999999999997776532 25788888888753
No 363
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=97.29 E-value=0.0085 Score=57.99 Aligned_cols=99 Identities=10% Similarity=0.128 Sum_probs=64.2
Q ss_pred cCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccch
Q 004456 59 SCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMT 138 (752)
Q Consensus 59 ~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (752)
...+.|+|+|+.+++...-..+.+. .+..+.+.|+.-.|+....
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~----sINeik~~p~~~qlvls~S-------------------------------- 155 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGG----SINEIKFHPDRPQLVLSAS-------------------------------- 155 (385)
T ss_pred cceeEEEEEecchhhhccceeccCc----cchhhhcCCCCCcEEEEec--------------------------------
Confidence 4668899999888775433222222 3456678888655544321
Q ss_pred hhccCChhhhhhhhhhcccEEEEEcc-CCCccccCCc-----cceeccccCCCCceEEEEecccCccccccccCccccEE
Q 004456 139 DNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-----AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQ 212 (752)
Q Consensus 139 ~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~~l~~~-----~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~ 212 (752)
+...|.+++. ++....+..+ +.+-++.||+||.+|+-...+ ..|.
T Consensus 156 ----------------kD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmD-------------hslk 206 (385)
T KOG1034|consen 156 ----------------KDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMD-------------HSLK 206 (385)
T ss_pred ----------------CCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCc-------------ceEE
Confidence 1145777777 5555444332 567799999999998876555 3789
Q ss_pred EEecCCceeE
Q 004456 213 VWTTDGKLVR 222 (752)
Q Consensus 213 ~~d~~~~~~~ 222 (752)
+|++..++..
T Consensus 207 ~W~l~~~~f~ 216 (385)
T KOG1034|consen 207 LWRLNVKEFK 216 (385)
T ss_pred EEecChhHHh
Confidence 9999876543
No 364
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.012 Score=54.85 Aligned_cols=238 Identities=10% Similarity=0.069 Sum_probs=136.2
Q ss_pred eceeEecCCC-CeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCC
Q 004456 33 INFVSWSPDG-KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (752)
Q Consensus 33 ~~~~~~SPDG-~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (752)
-...+|||== .+||.+... --.--+.+.|+|.++++++..+.. ..........+.+||+.-+.++++..
T Consensus 11 GysvqfSPf~~nrLavAt~q---~yGl~G~G~L~ile~~~~~gi~e~--~s~d~~D~LfdV~Wse~~e~~~~~a~----- 80 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQ---HYGLAGNGRLFILEVTDPKGIQEC--QSYDTEDGLFDVAWSENHENQVIAAS----- 80 (311)
T ss_pred cceeEecccccchhheeehh---hcccccCceEEEEecCCCCCeEEE--EeeecccceeEeeecCCCcceEEEEe-----
Confidence 4456777732 234443221 011245689999998744432222 11111224668899998777766532
Q ss_pred CCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccC---CCccccCCc-cceeccccCCCCc
Q 004456 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD---GTAKDFGTP-AVYTAVEPSPDQK 187 (752)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~---G~~~~l~~~-~~~~~~~~SpDGk 187 (752)
+.+.|.++|+. +....+.++ ..+.++.|++--+
T Consensus 81 -------------------------------------------GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r 117 (311)
T KOG0277|consen 81 -------------------------------------------GDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRR 117 (311)
T ss_pred -------------------------------------------cCceEEEeccCCCCcchhHHHhhhhheEEeccccccc
Confidence 12567777762 234444555 7899999999988
Q ss_pred eEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCC
Q 004456 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (752)
Q Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~ 267 (752)
+++.++.-. ..|.+|+.+-++-.+- |.+...-+....|||--...++.++
T Consensus 118 ~~~ltsSWD------------~TiKLW~~~r~~Sv~T------------f~gh~~~Iy~a~~sp~~~nlfas~S------ 167 (311)
T KOG0277|consen 118 RIFLTSSWD------------GTIKLWDPNRPNSVQT------------FNGHNSCIYQAAFSPHIPNLFASAS------ 167 (311)
T ss_pred eeEEeeccC------------CceEeecCCCCcceEe------------ecCCccEEEEEecCCCCCCeEEEcc------
Confidence 888876432 4788898765433221 2222333667899998776333332
Q ss_pred CccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccc
Q 004456 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE 347 (752)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 347 (752)
..+.+-++|++ ..+....+.-.+..+..-.|+.-...++++... .+.|+.+|+..-+ ..+.+.+.+
T Consensus 168 ------gd~~l~lwdvr--~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v---d~~vr~wDir~~r---~pl~eL~gh 233 (311)
T KOG0277|consen 168 ------GDGTLRLWDVR--SPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV---DNLVRGWDIRNLR---TPLFELNGH 233 (311)
T ss_pred ------CCceEEEEEec--CCCceeEEEeccceeEeecccccCCcEEEecCC---CceEEEEehhhcc---ccceeecCC
Confidence 45577788874 234444455555667777799887777776533 3357777876531 233333222
Q ss_pred cccCCCCCCceeeCCCCCeEEEee
Q 004456 348 NVYSDPGSPMMTRTSTGTNVIAKI 371 (752)
Q Consensus 348 ~~~~~~~~p~~~~s~dg~~l~~~~ 371 (752)
.. ..-.+.|||-..-|+.+.
T Consensus 234 ~~----AVRkvk~Sph~~~lLaSa 253 (311)
T KOG0277|consen 234 GL----AVRKVKFSPHHASLLASA 253 (311)
T ss_pred ce----EEEEEecCcchhhHhhhc
Confidence 11 011145777776554443
No 365
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=97.28 E-value=0.0012 Score=69.82 Aligned_cols=87 Identities=10% Similarity=0.189 Sum_probs=61.3
Q ss_pred hhHHHHHhCCcEEEecCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 004456 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 625 (752)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~ 625 (752)
.....|.+.||.+ . .+..|.|-...........++++.+.++.+.+... ..++.|+||||||.++..++..+|+
T Consensus 112 ~li~~L~~~GY~~-~---~dL~g~gYDwR~~~~~~~~~~~Lk~lIe~~~~~~g--~~kV~LVGHSMGGlva~~fl~~~p~ 185 (440)
T PLN02733 112 DMIEQLIKWGYKE-G---KTLFGFGYDFRQSNRLPETMDGLKKKLETVYKASG--GKKVNIISHSMGGLLVKCFMSLHSD 185 (440)
T ss_pred HHHHHHHHcCCcc-C---CCcccCCCCccccccHHHHHHHHHHHHHHHHHHcC--CCCEEEEEECHhHHHHHHHHHHCCH
Confidence 4567889999976 2 24445544444333345556778888887766532 3689999999999999999988875
Q ss_pred c----eeEEEEccCCCC
Q 004456 626 L----FCCGIARSGSYN 638 (752)
Q Consensus 626 ~----~~~~v~~~~~~~ 638 (752)
. ++..|++++...
T Consensus 186 ~~~k~I~~~I~la~P~~ 202 (440)
T PLN02733 186 VFEKYVNSWIAIAAPFQ 202 (440)
T ss_pred hHHhHhccEEEECCCCC
Confidence 3 677888876543
No 366
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.27 E-value=0.015 Score=63.35 Aligned_cols=81 Identities=9% Similarity=0.002 Sum_probs=53.7
Q ss_pred eEEeccCCCCCCC-CCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCC
Q 004456 277 IIYTQPAEPAEGE-KPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGS 355 (752)
Q Consensus 277 ~l~~~~~~~~~~~-~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 355 (752)
.|.++|+ .+. -.+.+......+.++.|||||++|+.++.+ ..|..+|+.++.--.-.+.+....
T Consensus 557 ~I~vvD~---~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD----~tIr~wDlpt~~lID~~~vd~~~~-------- 621 (910)
T KOG1539|consen 557 SIRVVDV---VTRKVVREFWGHGNRITDMTFSPDGRWLISASMD----STIRTWDLPTGTLIDGLLVDSPCT-------- 621 (910)
T ss_pred eEEEEEc---hhhhhhHHhhccccceeeeEeCCCCcEEEEeecC----CcEEEEeccCcceeeeEecCCcce--------
Confidence 6778887 222 234455567789999999999999998833 358888888751111112222211
Q ss_pred CceeeCCCCCeEEEeeee
Q 004456 356 PMMTRTSTGTNVIAKIKK 373 (752)
Q Consensus 356 p~~~~s~dg~~l~~~~~~ 373 (752)
.+++||.|.+||....+
T Consensus 622 -sls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 622 -SLSFSPNGDFLATVHVD 638 (910)
T ss_pred -eeEECCCCCEEEEEEec
Confidence 26689999999988744
No 367
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.17 E-value=0.062 Score=51.36 Aligned_cols=140 Identities=16% Similarity=0.129 Sum_probs=75.6
Q ss_pred cEEEEEccCC--CccccCCc---cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCC
Q 004456 157 AQLVLGSLDG--TAKDFGTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (752)
Q Consensus 157 ~~i~~~~~~G--~~~~l~~~---~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 231 (752)
.--+++|+++ +...+... -.+---.|||||++||-+.++-+.. .+-|-+||..-+ ..++-+-+
T Consensus 91 tf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~--------rGViGvYd~r~~-fqrvgE~~--- 158 (366)
T COG3490 91 TFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPN--------RGVIGVYDAREG-FQRVGEFS--- 158 (366)
T ss_pred ceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCC--------CceEEEEecccc-cceecccc---
Confidence 3466778855 44444333 2233567999999999887664321 246778888733 22222222
Q ss_pred CCCcccCCccccccceeeeeCCCceEEEEEec-----cCCCCccc-cCccceEEeccCCCCCCCCCeE--Ee--ecccce
Q 004456 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQ-----DRGDANVE-VSPRDIIYTQPAEPAEGEKPEI--LH--KLDLRF 301 (752)
Q Consensus 232 ~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~-----~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~--l~--~~~~~~ 301 (752)
....++.++.|.+||+. |+...-. +-++...+ ..+.-.+.++|.. +|.-..+ |. ....++
T Consensus 159 -------t~GiGpHev~lm~DGrt-lvvanGGIethpdfgR~~lNldsMePSlvlld~a--tG~liekh~Lp~~l~~lSi 228 (366)
T COG3490 159 -------THGIGPHEVTLMADGRT-LVVANGGIETHPDFGRTELNLDSMEPSLVLLDAA--TGNLIEKHTLPASLRQLSI 228 (366)
T ss_pred -------cCCcCcceeEEecCCcE-EEEeCCceecccccCccccchhhcCccEEEEecc--ccchhhhccCchhhhhcce
Confidence 22345779999999996 6655320 11111111 1223345666642 3433333 22 223356
Q ss_pred eeeeeecCCceEEEeeec
Q 004456 302 RSVSWCDDSLALVNETWY 319 (752)
Q Consensus 302 ~~~~~spDg~~l~~~~~~ 319 (752)
+.+..-+||+ ++|...+
T Consensus 229 RHld~g~dgt-vwfgcQy 245 (366)
T COG3490 229 RHLDIGRDGT-VWFGCQY 245 (366)
T ss_pred eeeeeCCCCc-EEEEEEe
Confidence 7777788887 5555433
No 368
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=97.17 E-value=0.011 Score=60.29 Aligned_cols=136 Identities=13% Similarity=0.168 Sum_probs=91.8
Q ss_pred cEEEEEcc-CC-CccccCCc--cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCC
Q 004456 157 AQLVLGSL-DG-TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (752)
Q Consensus 157 ~~i~~~~~-~G-~~~~l~~~--~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 232 (752)
+.|.+..+ ++ ....++.+ ..+.-+.+||-.|+|+.+..++ +.+.+||+++.....-.... ..
T Consensus 143 Gdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~------------G~VtlwDv~g~sp~~~~~~~--Hs 208 (673)
T KOG4378|consen 143 GDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDK------------GAVTLWDVQGMSPIFHASEA--HS 208 (673)
T ss_pred CcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccC------------CeEEEEeccCCCcccchhhh--cc
Confidence 56777777 45 55566555 4455889999999999988775 47899999987543322111 11
Q ss_pred CCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCce
Q 004456 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLA 312 (752)
Q Consensus 233 ~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~ 312 (752)
.| .+++.|||-...+|+-+ ....+|+++|.. .......| ........++|+++|.+
T Consensus 209 AP---------~~gicfspsne~l~vsV------------G~Dkki~~yD~~--s~~s~~~l-~y~~Plstvaf~~~G~~ 264 (673)
T KOG4378|consen 209 AP---------CRGICFSPSNEALLVSV------------GYDKKINIYDIR--SQASTDRL-TYSHPLSTVAFSECGTY 264 (673)
T ss_pred CC---------cCcceecCCccceEEEe------------cccceEEEeecc--ccccccee-eecCCcceeeecCCceE
Confidence 12 56899999988623333 256689999983 11122223 34455678999999998
Q ss_pred EEEeeecccCceeEEEEcCCCC
Q 004456 313 LVNETWYKTSQTRTWLVCPGSK 334 (752)
Q Consensus 313 l~~~~~~~~~~~~l~~~~~~~~ 334 (752)
|+.+. ..++|+.+|+.+.
T Consensus 265 L~aG~----s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 265 LCAGN----SKGELIAYDMRST 282 (673)
T ss_pred EEeec----CCceEEEEecccC
Confidence 88876 5668999999874
No 369
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.17 E-value=0.017 Score=53.32 Aligned_cols=200 Identities=14% Similarity=0.153 Sum_probs=118.7
Q ss_pred cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCcee-EEecCCCCCCCCCcccCCccccccceeeeeCC
Q 004456 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (752)
Q Consensus 175 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG 253 (752)
+.+..+.|.-||++.+--..++ .+.+|+.-.+.. +....... .+.+.+.+-|.
T Consensus 18 gaV~avryN~dGnY~ltcGsdr-------------tvrLWNp~rg~liktYsghG~-------------EVlD~~~s~Dn 71 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTCGSDR-------------TVRLWNPLRGALIKTYSGHGH-------------EVLDAALSSDN 71 (307)
T ss_pred cceEEEEEccCCCEEEEcCCCc-------------eEEeecccccceeeeecCCCc-------------eeeeccccccc
Confidence 6777889999999987654443 788998765433 33222222 25566777776
Q ss_pred CceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCC
Q 004456 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (752)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 333 (752)
.. ++-. + ....+++||+. .|+..+.+....+.+..++|..+...++.++. + ..+..+|-.+
T Consensus 72 sk-f~s~----G--------gDk~v~vwDV~--TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sgsf-D---~s~r~wDCRS 132 (307)
T KOG0316|consen 72 SK-FASC----G--------GDKAVQVWDVN--TGKVDRRFRGHLAQVNTVRFNEESSVVASGSF-D---SSVRLWDCRS 132 (307)
T ss_pred cc-cccC----C--------CCceEEEEEcc--cCeeeeecccccceeeEEEecCcceEEEeccc-c---ceeEEEEccc
Confidence 65 2222 1 22378999994 44556667777888899999988876666552 2 2366666655
Q ss_pred CCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeec
Q 004456 334 KDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 413 (752)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~ 413 (752)
...+|.++.+.....+ .+..-.+..|+..+.+ | .+..+|+..|+.. .+
T Consensus 133 ~s~ePiQildea~D~V--------~Si~v~~heIvaGS~D-------------G--------tvRtydiR~G~l~---sD 180 (307)
T KOG0316|consen 133 RSFEPIQILDEAKDGV--------SSIDVAEHEIVAGSVD-------------G--------TVRTYDIRKGTLS---SD 180 (307)
T ss_pred CCCCccchhhhhcCce--------eEEEecccEEEeeccC-------------C--------cEEEEEeecceee---hh
Confidence 5456666655443221 1112234444444322 2 3667787666542 22
Q ss_pred cchhhhhceeeeecCCcceecccCCCEEEEEEecCCCCcEEEEEECCCCCee
Q 004456 414 NREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSS 465 (752)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~~g~~~ 465 (752)
. +- ......++|+|++-++...- .+.|.++|-++|+.-
T Consensus 181 y----~g------~pit~vs~s~d~nc~La~~l----~stlrLlDk~tGklL 218 (307)
T KOG0316|consen 181 Y----FG------HPITSVSFSKDGNCSLASSL----DSTLRLLDKETGKLL 218 (307)
T ss_pred h----cC------CcceeEEecCCCCEEEEeec----cceeeecccchhHHH
Confidence 1 11 11123589999998766543 334889998888753
No 370
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=97.15 E-value=0.028 Score=53.56 Aligned_cols=114 Identities=18% Similarity=0.291 Sum_probs=77.1
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcce-e-ccCCCCccccccccceEEec--CCcEEEEEecC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-P-LFESPDICLNAVFGSFVWVN--NSTLLIFTIPS 107 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~-~-lt~~~~~~~~~~~~~~~wsp--dg~~l~~~~~~ 107 (752)
++.-..|-||+++||... .++|-+++++.+..+ + |...........+.+-.||| ||..++.+..
T Consensus 125 ~i~cvew~Pns~klasm~-----------dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d- 192 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMD-----------DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSD- 192 (370)
T ss_pred ceeeEEEcCCCCeeEEec-----------cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCC-
Confidence 577789999999999953 378888888876652 1 21111111222345679998 7888887622
Q ss_pred CCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CC-CccccCCc--cceeccccC
Q 004456 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP--AVYTAVEPS 183 (752)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G-~~~~l~~~--~~~~~~~~S 183 (752)
+.++.+|+ +- +.-.+... -.+.++.|.
T Consensus 193 -------------------------------------------------~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfN 223 (370)
T KOG1007|consen 193 -------------------------------------------------STLQFWDLRTMKKNNSIEDAHGQRVRDLDFN 223 (370)
T ss_pred -------------------------------------------------CcEEEEEccchhhhcchhhhhcceeeeccCC
Confidence 56777777 33 33333333 467799999
Q ss_pred CCCceEEEEecccCccccccccCccccEEEEecCC
Q 004456 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (752)
Q Consensus 184 pDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 218 (752)
|+-.+++++..+. +.+.+||...
T Consensus 224 pnkq~~lvt~gDd------------gyvriWD~R~ 246 (370)
T KOG1007|consen 224 PNKQHILVTCGDD------------GYVRIWDTRK 246 (370)
T ss_pred CCceEEEEEcCCC------------ccEEEEeccC
Confidence 9999999987775 4688888753
No 371
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.13 E-value=0.021 Score=55.10 Aligned_cols=136 Identities=14% Similarity=0.165 Sum_probs=81.6
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCccee-ccCCCCccccccccceEEecCCc--EEEEEecCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNST--LLIFTIPSS 108 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~-lt~~~~~~~~~~~~~~~wspdg~--~l~~~~~~~ 108 (752)
.+...+. +|.++|.. +.+..|.|+|+....... |..+.+ .+..+.|.++-. +|+-.+.
T Consensus 45 sitavAV--s~~~~aSG----------ssDetI~IYDm~k~~qlg~ll~Hag-----sitaL~F~~~~S~shLlS~sd-- 105 (362)
T KOG0294|consen 45 SITALAV--SGPYVASG----------SSDETIHIYDMRKRKQLGILLSHAG-----SITALKFYPPLSKSHLLSGSD-- 105 (362)
T ss_pred ceeEEEe--cceeEecc----------CCCCcEEEEeccchhhhcceecccc-----ceEEEEecCCcchhheeeecC--
Confidence 3444555 48888875 344688888887654433 222222 355677777653 5554321
Q ss_pred CCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCC--CccccCCc-cceeccccCCC
Q 004456 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--TAKDFGTP-AVYTAVEPSPD 185 (752)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G--~~~~l~~~-~~~~~~~~SpD 185 (752)
.++|..++..- ....+..+ +.+..++..|.
T Consensus 106 -----------------------------------------------DG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS 138 (362)
T KOG0294|consen 106 -----------------------------------------------DGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPS 138 (362)
T ss_pred -----------------------------------------------CCcEEEEEcCCeEEeeeecccccccceeEecCC
Confidence 15677777643 22333333 56888999999
Q ss_pred CceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEE
Q 004456 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (752)
Q Consensus 186 Gk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~ 260 (752)
||.-+-...+ ..+.+||+..+..-.+...... ...+.|+|.|.+ ++..
T Consensus 139 ~KLALsVg~D-------------~~lr~WNLV~Gr~a~v~~L~~~-------------at~v~w~~~Gd~-F~v~ 186 (362)
T KOG0294|consen 139 GKLALSVGGD-------------QVLRTWNLVRGRVAFVLNLKNK-------------ATLVSWSPQGDH-FVVS 186 (362)
T ss_pred CceEEEEcCC-------------ceeeeehhhcCccceeeccCCc-------------ceeeEEcCCCCE-EEEE
Confidence 9765554444 3688999876655444444322 334899999997 4444
No 372
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=97.12 E-value=0.0037 Score=64.35 Aligned_cols=91 Identities=14% Similarity=0.175 Sum_probs=59.0
Q ss_pred cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCC
Q 004456 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (752)
Q Consensus 175 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~ 254 (752)
+.+..++|||||++||..+.+. -|.+++-++.+..-+...... +..=+.||||||
T Consensus 291 g~in~f~FS~DG~~LA~VSqDG-------------fLRvF~fdt~eLlg~mkSYFG------------GLLCvcWSPDGK 345 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDG-------------FLRIFDFDTQELLGVMKSYFG------------GLLCVCWSPDGK 345 (636)
T ss_pred ccccceeEcCCCceEEEEecCc-------------eEEEeeccHHHHHHHHHhhcc------------ceEEEEEcCCcc
Confidence 6788999999999999998774 688888887765554443322 233479999999
Q ss_pred ceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeeccc---ceeeeeeec
Q 004456 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL---RFRSVSWCD 308 (752)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~---~~~~~~~sp 308 (752)
+ |+.-- +.+.+-+|.. .+.+.+..+.+ -+..++|-|
T Consensus 346 y-IvtGG------------EDDLVtVwSf-----~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 346 Y-IVTGG------------EDDLVTVWSF-----EERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred E-EEecC------------CcceEEEEEe-----ccceEEEeccccccceeeEeecc
Confidence 6 44331 3446777766 24455554433 244455554
No 373
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.11 E-value=0.038 Score=56.11 Aligned_cols=58 Identities=24% Similarity=0.209 Sum_probs=39.3
Q ss_pred eceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEE
Q 004456 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (752)
Q Consensus 33 ~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (752)
+-..+.||||+|||+. ..+..|.|++.++.+..+.+.+... .|.++.|--.-..||..
T Consensus 205 il~~avS~Dgkylatg----------g~d~~v~Iw~~~t~ehv~~~~ghr~----~V~~L~fr~gt~~lys~ 262 (479)
T KOG0299|consen 205 ILTLAVSSDGKYLATG----------GRDRHVQIWDCDTLEHVKVFKGHRG----AVSSLAFRKGTSELYSA 262 (479)
T ss_pred eEEEEEcCCCcEEEec----------CCCceEEEecCcccchhhccccccc----ceeeeeeecCccceeee
Confidence 4557899999999994 4456777999999998877433321 35566666444445443
No 374
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=97.10 E-value=0.00052 Score=70.00 Aligned_cols=109 Identities=11% Similarity=-0.029 Sum_probs=59.3
Q ss_pred CceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHh---CCcEEEecCCCCCCCCCCCCCCc---hhHHHHHHH
Q 004456 512 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA---RRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSS 585 (752)
Q Consensus 512 ~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~d 585 (752)
..|++|++||.. +... ...+.......+.+ ..+.|+++|..... .. ... ......-+.
T Consensus 70 ~~pt~iiiHGw~-----------~~~~-~~~~~~~~~~all~~~~~d~NVI~VDWs~~a---~~-~Y~~a~~n~~~vg~~ 133 (331)
T PF00151_consen 70 SKPTVIIIHGWT-----------GSGS-SESWIQDMIKALLQKDTGDYNVIVVDWSRGA---SN-NYPQAVANTRLVGRQ 133 (331)
T ss_dssp TSEEEEEE--TT------------TT--TTTHHHHHHHHHHCC--S-EEEEEEE-HHHH---SS--HHHHHHHHHHHHHH
T ss_pred CCCeEEEEcCcC-----------Cccc-chhHHHHHHHHHHhhccCCceEEEEcchhhc---cc-cccchhhhHHHHHHH
Confidence 479999999941 1110 01111122333444 48999995542111 11 110 111223445
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC--ceeEEEEccCC
Q 004456 586 AEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH--LFCCGIARSGS 636 (752)
Q Consensus 586 ~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~--~~~~~v~~~~~ 636 (752)
+...+.+|.....++.++|.|+|||+||++|..++.+... ++..+..+.|.
T Consensus 134 la~~l~~L~~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPA 186 (331)
T PF00151_consen 134 LAKFLSFLINNFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPA 186 (331)
T ss_dssp HHHHHHHHHHHH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B
T ss_pred HHHHHHHHHhhcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCcc
Confidence 5566777775556788999999999999999999887755 67788887774
No 375
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.09 E-value=0.069 Score=61.00 Aligned_cols=83 Identities=10% Similarity=0.226 Sum_probs=53.0
Q ss_pred cEEEEEccCCCccccCCc--cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCC
Q 004456 157 AQLVLGSLDGTAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (752)
Q Consensus 157 ~~i~~~~~~G~~~~l~~~--~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (752)
..|.+++.+|.......+ +....++|-|.|..|+....... ..+|..+..+|-....+...-..+.
T Consensus 222 RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s----------d~~IvffErNGL~hg~f~l~~p~de-- 289 (1265)
T KOG1920|consen 222 RKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS----------DSDIVFFERNGLRHGEFVLPFPLDE-- 289 (1265)
T ss_pred eeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCC----------CCcEEEEecCCccccccccCCcccc--
Confidence 467777777755555444 66779999999999998765532 1367778777664433322211111
Q ss_pred cccCCccccccceeeeeCCCceEEE
Q 004456 235 VCYNSVREGMRSISWRADKPSTLYW 259 (752)
Q Consensus 235 ~~~~~~~~~~~~~~wspDG~~~l~~ 259 (752)
..+.++.|+-++.- |+.
T Consensus 290 -------~~ve~L~Wns~sdi-LAv 306 (1265)
T KOG1920|consen 290 -------KEVEELAWNSNSDI-LAV 306 (1265)
T ss_pred -------cchheeeecCCCCc-eee
Confidence 11568999999996 544
No 376
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=97.02 E-value=0.26 Score=45.18 Aligned_cols=72 Identities=10% Similarity=0.042 Sum_probs=48.2
Q ss_pred ccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCc
Q 004456 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQ 323 (752)
Q Consensus 244 ~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 323 (752)
+..++..|.|+ |+.... ......++|+. .+...+........++.+.|||.-.+++..+ -.
T Consensus 234 vaav~vdpsgr--ll~sg~-----------~dssc~lydir--g~r~iq~f~phsadir~vrfsp~a~yllt~s----yd 294 (350)
T KOG0641|consen 234 VAAVAVDPSGR--LLASGH-----------ADSSCMLYDIR--GGRMIQRFHPHSADIRCVRFSPGAHYLLTCS----YD 294 (350)
T ss_pred eEEEEECCCcc--eeeecc-----------CCCceEEEEee--CCceeeeeCCCccceeEEEeCCCceEEEEec----cc
Confidence 44678899998 333321 22356777773 2334455667778899999999888877766 33
Q ss_pred eeEEEEcCCCC
Q 004456 324 TRTWLVCPGSK 334 (752)
Q Consensus 324 ~~l~~~~~~~~ 334 (752)
..|.+.|+++.
T Consensus 295 ~~ikltdlqgd 305 (350)
T KOG0641|consen 295 MKIKLTDLQGD 305 (350)
T ss_pred ceEEEeecccc
Confidence 45888888874
No 377
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.01 E-value=0.26 Score=56.64 Aligned_cols=176 Identities=12% Similarity=0.116 Sum_probs=95.2
Q ss_pred cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCC
Q 004456 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (752)
Q Consensus 175 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~ 254 (752)
..+.++.|--|+..|.+....+ +|.+.|..+.....+.... .|+..++||||++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G-------------~iilvd~et~~~eivg~vd-------------~GI~aaswS~Dee 122 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALG-------------DIILVDPETLELEIVGNVD-------------NGISAASWSPDEE 122 (1265)
T ss_pred cceEEEEEecccceEEEEecCC-------------cEEEEcccccceeeeeecc-------------CceEEEeecCCCc
Confidence 4567888888888888876553 6777777766555544433 4588899999999
Q ss_pred ceEEEEEeccCC---CCccccCccceEEe--------ccCCCCCCCCCeEEee---------------------ccccee
Q 004456 255 STLYWVEAQDRG---DANVEVSPRDIIYT--------QPAEPAEGEKPEILHK---------------------LDLRFR 302 (752)
Q Consensus 255 ~~l~~~~~~~~~---~~~~~~~~~~~l~~--------~~~~~~~~~~~~~l~~---------------------~~~~~~ 302 (752)
. ++++.....- ...+..-....+.. +++ . -|.+..++.. ....-.
T Consensus 123 ~-l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~V-G-wGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~ 199 (1265)
T KOG1920|consen 123 L-LALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNV-G-WGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKT 199 (1265)
T ss_pred E-EEEEeCCcEEEEEeccccchhcccccccccccccccee-c-ccccceeeecchhhhcccccccccccccchhhccCCc
Confidence 7 6666431100 00000000000000 000 0 0111111110 111224
Q ss_pred eeeeecCCceEEEeeec-ccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEE
Q 004456 303 SVSWCDDSLALVNETWY-KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYI 381 (752)
Q Consensus 303 ~~~~spDg~~l~~~~~~-~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~ 381 (752)
++.|--||++++.+... .++...|.+++-++- ...+...... -.+.++|-|.|..++......+ +..++
T Consensus 200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~----Lns~se~~~~-----l~~~LsWkPsgs~iA~iq~~~s-d~~Iv 269 (1265)
T KOG1920|consen 200 SISWRGDGEYFAVSFVESETGTRKIRVYDREGA----LNSTSEPVEG-----LQHSLSWKPSGSLIAAIQCKTS-DSDIV 269 (1265)
T ss_pred eEEEccCCcEEEEEEEeccCCceeEEEecccch----hhcccCcccc-----cccceeecCCCCeEeeeeecCC-CCcEE
Confidence 58899999999987532 223356777776531 2222222211 2345889999988876655443 33677
Q ss_pred EEccCCCC
Q 004456 382 LLNGRGFT 389 (752)
Q Consensus 382 ~~~~~g~~ 389 (752)
++.++|-.
T Consensus 270 ffErNGL~ 277 (1265)
T KOG1920|consen 270 FFERNGLR 277 (1265)
T ss_pred EEecCCcc
Confidence 88888853
No 378
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.00 E-value=0.057 Score=51.87 Aligned_cols=128 Identities=13% Similarity=0.118 Sum_probs=76.7
Q ss_pred cEEEEEcc--CCC--ccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCC
Q 004456 157 AQLVLGSL--DGT--AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (752)
Q Consensus 157 ~~i~~~~~--~G~--~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 231 (752)
++|..|++ +|. .+..... +.+...+||-||..++....++ ++.+||+.+++..++......
T Consensus 50 ~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk-------------~~k~wDL~S~Q~~~v~~Hd~p- 115 (347)
T KOG0647|consen 50 GTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDK-------------QAKLWDLASGQVSQVAAHDAP- 115 (347)
T ss_pred CceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCC-------------ceEEEEccCCCeeeeeecccc-
Confidence 34555555 562 3333333 7888999999998887766553 799999999988887666533
Q ss_pred CCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEe--ecccceeeeeeecC
Q 004456 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDD 309 (752)
Q Consensus 232 ~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~--~~~~~~~~~~~spD 309 (752)
++.+.|=+...+.++.+. ++...|-.||.. ....+. ....++ ++-|
T Consensus 116 ------------vkt~~wv~~~~~~cl~TG-----------SWDKTlKfWD~R-----~~~pv~t~~LPeRv----Ya~D 163 (347)
T KOG0647|consen 116 ------------VKTCHWVPGMNYQCLVTG-----------SWDKTLKFWDTR-----SSNPVATLQLPERV----YAAD 163 (347)
T ss_pred ------------eeEEEEecCCCcceeEec-----------ccccceeecccC-----CCCeeeeeecccee----eehh
Confidence 677788766654233332 245577888872 333333 222222 2333
Q ss_pred Cc--eEEEeeecccCceeEEEEcCCCC
Q 004456 310 SL--ALVNETWYKTSQTRTWLVCPGSK 334 (752)
Q Consensus 310 g~--~l~~~~~~~~~~~~l~~~~~~~~ 334 (752)
-. .++.+. .+.+|.++++..+
T Consensus 164 v~~pm~vVat----a~r~i~vynL~n~ 186 (347)
T KOG0647|consen 164 VLYPMAVVAT----AERHIAVYNLENP 186 (347)
T ss_pred ccCceeEEEe----cCCcEEEEEcCCC
Confidence 22 233333 3446888888765
No 379
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=0.21 Score=52.82 Aligned_cols=214 Identities=11% Similarity=0.015 Sum_probs=123.7
Q ss_pred ceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCc
Q 004456 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (752)
Q Consensus 176 ~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~ 255 (752)
.......+++|+.++...... ..+.+.|..+.....-.... ..+..++++|+|+.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~------------~~v~vid~~~~~~~~~~~vG-------------~~P~~~~~~~~~~~ 129 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDS------------NTVSVIDTATNTVLGSIPVG-------------LGPVGLAVDPDGKY 129 (381)
T ss_pred cccceeeCCCCCeEEEecCCC------------CeEEEEcCcccceeeEeeec-------------cCCceEEECCCCCE
Confidence 345778999999998876553 36777775544332211111 12568999999998
Q ss_pred eEEEEEeccCCCCccccCccceEEeccCCCCCCCCC-eEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCC
Q 004456 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (752)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 334 (752)
+|...... ....+.++|. .+... ..+..+. .....+++|+|+.++... ...+.|..++.++.
T Consensus 130 -vYV~n~~~---------~~~~vsvid~---~t~~~~~~~~vG~-~P~~~a~~p~g~~vyv~~---~~~~~v~vi~~~~~ 192 (381)
T COG3391 130 -VYVANAGN---------GNNTVSVIDA---ATNKVTATIPVGN-TPTGVAVDPDGNKVYVTN---SDDNTVSVIDTSGN 192 (381)
T ss_pred -EEEEeccc---------CCceEEEEeC---CCCeEEEEEecCC-CcceEEECCCCCeEEEEe---cCCCeEEEEeCCCc
Confidence 77774321 2447778776 33222 2222222 236788999999777754 23456888887663
Q ss_pred CccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeecc
Q 004456 335 DVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESN 414 (752)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~ 414 (752)
....-+....-.. ..+.-.+.+++||.+++...... ....+.++|..++........-
T Consensus 193 --~v~~~~~~~~~~~--~~~P~~i~v~~~g~~~yV~~~~~------------------~~~~v~~id~~~~~v~~~~~~~ 250 (381)
T COG3391 193 --SVVRGSVGSLVGV--GTGPAGIAVDPDGNRVYVANDGS------------------GSNNVLKIDTATGNVTATDLPV 250 (381)
T ss_pred --ceecccccccccc--CCCCceEEECCCCCEEEEEeccC------------------CCceEEEEeCCCceEEEecccc
Confidence 1111111000110 11222356899999887776321 0235888998887765441111
Q ss_pred chhhhhceeeeecCCcceecccCCCEEEEEEecCCCCcEEEEEECCCCCeeE
Q 004456 415 REKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 466 (752)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~~g~~~~ 466 (752)
.. . .......+|+|+.++..... ...++.+|..+.....
T Consensus 251 ~~---------~-~~~~v~~~p~g~~~yv~~~~---~~~V~vid~~~~~v~~ 289 (381)
T COG3391 251 GS---------G-APRGVAVDPAGKAAYVANSQ---GGTVSVIDGATDRVVK 289 (381)
T ss_pred cc---------C-CCCceeECCCCCEEEEEecC---CCeEEEEeCCCCceee
Confidence 10 0 12235789999988776433 5578889877665554
No 380
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=96.98 E-value=0.063 Score=52.07 Aligned_cols=61 Identities=18% Similarity=0.255 Sum_probs=40.7
Q ss_pred eceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCc-ceeccCCCCccccccccceEEecCCcEEEEEe
Q 004456 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (752)
Q Consensus 33 ~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~ 105 (752)
+.--+|++|++.||... ...++.|+...+.+ ..++-....++ ..+..+.|+|.+..|+--+
T Consensus 13 itchAwn~drt~iAv~~----------~~~evhiy~~~~~~~w~~~htls~Hd--~~vtgvdWap~snrIvtcs 74 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSP----------NNHEVHIYSMLGADLWEPAHTLSEHD--KIVTGVDWAPKSNRIVTCS 74 (361)
T ss_pred eeeeeecCCCceEEecc----------CCceEEEEEecCCCCceeceehhhhC--cceeEEeecCCCCceeEcc
Confidence 55678999999999963 33577777777777 33332122222 1356789999998887653
No 381
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=96.97 E-value=0.05 Score=51.72 Aligned_cols=155 Identities=19% Similarity=0.140 Sum_probs=87.4
Q ss_pred chhHHHHHhCCcEEEecCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCC--cEEEEEeChHHHHHHHHHHh
Q 004456 545 PTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPS--RIAVGGHSYGAFMTAHLLAH 622 (752)
Q Consensus 545 ~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~--~i~l~G~S~GG~~a~~~~~~ 622 (752)
..+...|+++||+|++.++.. + +.+...-....+.+..+++.|.++...+.. ++.=+|||+|.-+-+.+...
T Consensus 37 r~lLe~La~~Gy~ViAtPy~~--t----fDH~~~A~~~~~~f~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~ 110 (250)
T PF07082_consen 37 RYLLERLADRGYAVIATPYVV--T----FDHQAIAREVWERFERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSL 110 (250)
T ss_pred HHHHHHHHhCCcEEEEEecCC--C----CcHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhh
Confidence 357778999999999966632 2 122223345566677788888776544333 68889999999999988877
Q ss_pred CCCceeEEEEccCCCCC---CCCcc----C---ccccccchhhhHHHHHhcChhhhcCCCCCCEEEEEeCCCCCCCCCHH
Q 004456 623 APHLFCCGIARSGSYNK---TLTPF----G---FQTEFRTLWEATNVYIEMSPITHANKIKKPILIIHGEVDDKVGLFPM 692 (752)
Q Consensus 623 ~p~~~~~~v~~~~~~~~---~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~ 692 (752)
.+..-++-|+++-- +. ...++ . ......++.+......+. ..-...|+|.=.+|.+ .
T Consensus 111 ~~~~r~gniliSFN-N~~a~~aIP~~~~l~~~l~~EF~PsP~ET~~li~~~-------Y~~~rnLLIkF~~D~i-----D 177 (250)
T PF07082_consen 111 FDVERAGNILISFN-NFPADEAIPLLEQLAPALRLEFTPSPEETRRLIRES-------YQVRRNLLIKFNDDDI-----D 177 (250)
T ss_pred ccCcccceEEEecC-ChHHHhhCchHhhhccccccCccCCHHHHHHHHHHh-------cCCccceEEEecCCCc-----c
Confidence 64333444554421 10 00010 0 001112222222222211 1124467788888864 4
Q ss_pred HHHHHHHHHHhCC-CcEEEEEeCCCCcc
Q 004456 693 QAERFFDALKGHG-ALSRLVLLPFEHHV 719 (752)
Q Consensus 693 ~~~~~~~~l~~~~-~~~~~~~~~~~~H~ 719 (752)
++..+.+.|+... ..++....+ +.|.
T Consensus 178 qt~~L~~~L~~r~~~~~~~~~L~-G~HL 204 (250)
T PF07082_consen 178 QTDELEQILQQRFPDMVSIQTLP-GNHL 204 (250)
T ss_pred chHHHHHHHhhhccccceEEeCC-CCCC
Confidence 6777778777643 335666776 4684
No 382
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=96.94 E-value=0.16 Score=56.01 Aligned_cols=103 Identities=13% Similarity=0.066 Sum_probs=58.8
Q ss_pred eeeeeeecCCceEEEeeecccCceeEEEEcCCC--CCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcc
Q 004456 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS--KDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQ 378 (752)
Q Consensus 301 ~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~ 378 (752)
....++||.++.++.+. .+ ++|.++.--+ .....-.+....... -..++||+||.+|+-..++
T Consensus 208 ~t~~~~spn~~~~Aa~d-~d---GrI~vw~d~~~~~~~~t~t~lHWH~~~------V~~L~fS~~G~~LlSGG~E----- 272 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGD-SD---GRILVWRDFGSSDDSETCTLLHWHHDE------VNSLSFSSDGAYLLSGGRE----- 272 (792)
T ss_pred ceeEEeccccceEEEec-cC---CcEEEEeccccccccccceEEEecccc------cceeEEecCCceEeecccc-----
Confidence 45678999999888875 22 2355554333 111112222222111 1237799999998776533
Q ss_pred eEEEEccCCCCCCCCCCeeEEEecCCCceeEEeeccchhhhhceeeeecCCcceecccCCCEEEEEEe
Q 004456 379 IYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKE 446 (752)
Q Consensus 379 ~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~ 446 (752)
--|.+|.++|++.+-|-.-... + ..+.+|||+.....+..
T Consensus 273 ----------------~VLv~Wq~~T~~kqfLPRLgs~-----I-------~~i~vS~ds~~~sl~~~ 312 (792)
T KOG1963|consen 273 ----------------GVLVLWQLETGKKQFLPRLGSP-----I-------LHIVVSPDSDLYSLVLE 312 (792)
T ss_pred ----------------eEEEEEeecCCCcccccccCCe-----e-------EEEEEcCCCCeEEEEec
Confidence 2488999999885544322211 1 13578888887665554
No 383
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=96.94 E-value=0.013 Score=54.99 Aligned_cols=148 Identities=15% Similarity=0.108 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-----ceeEEEEccCCCCCCCCccC-------ccc
Q 004456 581 QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-----LFCCGIARSGSYNKTLTPFG-------FQT 648 (752)
Q Consensus 581 ~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~-----~~~~~v~~~~~~~~~~~~~~-------~~~ 648 (752)
+....+..++.+|.++..+ .++-++||||||.....++...-. .++..|++++.++....... ...
T Consensus 117 ~~s~wlk~~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN~~~l~~de~v~~v~~~~ 194 (288)
T COG4814 117 DQSKWLKKAMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFNVGNLVPDETVTDVLKDG 194 (288)
T ss_pred hHHHHHHHHHHHHHHhcCC--ceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEecccccccccCCCcchheeeccC
Confidence 3366788999999998765 589999999999998888876521 36777777776651111110 000
Q ss_pred c--ccchhhhHHHHHhcChhhhcCCCCCCEEEEEeCCC------CCCCCCHHHHHHHHHHHHhCCCcEEEEEeCC--CCc
Q 004456 649 E--FRTLWEATNVYIEMSPITHANKIKKPILIIHGEVD------DKVGLFPMQAERFFDALKGHGALSRLVLLPF--EHH 718 (752)
Q Consensus 649 ~--~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D------~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~H 718 (752)
+ ..+++ ..|+.... ..++ -..-+|++.|+-| -.|| ...+...+..+...++.+...+|+| +.|
T Consensus 195 ~~~~~t~y---~~y~~~n~-k~v~-~~~evl~IaGDl~dg~~tDG~Vp--~assls~~~lf~~~~ksy~e~~~~Gk~a~H 267 (288)
T COG4814 195 PGLIKTPY---YDYIAKNY-KKVS-PNTEVLLIAGDLDDGKQTDGAVP--WASSLSIYHLFKKNGKSYIESLYKGKDARH 267 (288)
T ss_pred ccccCcHH---HHHHHhcc-eeCC-CCcEEEEEecccccCCcCCCcee--chHhHHHHHHhccCcceeEEEeeeCCcchh
Confidence 0 00111 01111000 0011 1366999999754 5677 7888888888888877777767776 467
Q ss_pred cCCccccHHHHHHHHHHHHHH
Q 004456 719 VYAARENVMHVIWETDRWLQK 739 (752)
Q Consensus 719 ~~~~~~~~~~~~~~~~~fl~~ 739 (752)
.-. .+ ...+...+..||-+
T Consensus 268 s~l-he-n~~v~~yv~~FLw~ 286 (288)
T COG4814 268 SKL-HE-NPTVAKYVKNFLWE 286 (288)
T ss_pred hcc-CC-ChhHHHHHHHHhhc
Confidence 533 22 33566667777643
No 384
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=96.94 E-value=0.0023 Score=42.13 Aligned_cols=37 Identities=11% Similarity=0.050 Sum_probs=26.7
Q ss_pred eEEeecccceeeeeeecCCceEEEeeecc-cCceeEEE
Q 004456 292 EILHKLDLRFRSVSWCDDSLALVNETWYK-TSQTRTWL 328 (752)
Q Consensus 292 ~~l~~~~~~~~~~~~spDg~~l~~~~~~~-~~~~~l~~ 328 (752)
++++........++|||||++|+|.+... .+..+||+
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 45666777788999999999999998654 25566774
No 385
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.92 E-value=0.024 Score=55.69 Aligned_cols=162 Identities=11% Similarity=0.184 Sum_probs=99.3
Q ss_pred ccEEEEEcc--CCCccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeE-Ee-cCCCCC
Q 004456 156 TAQLVLGSL--DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-EL-CDLPPA 230 (752)
Q Consensus 156 ~~~i~~~~~--~G~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l-~~~~~~ 230 (752)
+.+|-+||. +-..+.+..+ ..+..+.|+|--..|+-..... ..|.++|+...... .+ ....
T Consensus 166 Ge~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD------------rsIvLyD~R~~~Pl~KVi~~mR-- 231 (433)
T KOG0268|consen 166 GEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD------------RSIVLYDLRQASPLKKVILTMR-- 231 (433)
T ss_pred CceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC------------CceEEEecccCCccceeeeecc--
Confidence 346777777 3356666666 6788999999988887765432 47999998755332 11 1111
Q ss_pred CCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEE-eecccceeeeeeecC
Q 004456 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL-HKLDLRFRSVSWCDD 309 (752)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-~~~~~~~~~~~~spD 309 (752)
...++|+|.+ ..|++.. ....||.+|...+ ..+..+ ......+.++.|||-
T Consensus 232 -------------TN~IswnPea---fnF~~a~----------ED~nlY~~DmR~l--~~p~~v~~dhvsAV~dVdfspt 283 (433)
T KOG0268|consen 232 -------------TNTICWNPEA---FNFVAAN----------EDHNLYTYDMRNL--SRPLNVHKDHVSAVMDVDFSPT 283 (433)
T ss_pred -------------ccceecCccc---cceeecc----------ccccceehhhhhh--cccchhhcccceeEEEeccCCC
Confidence 2358999944 4455422 3346888887422 222222 344456788999999
Q ss_pred CceEEEeeecccCceeEEEEcCCCCCccceec-cccccccccCCCCCCceeeCCCCCeEEEee
Q 004456 310 SLALVNETWYKTSQTRTWLVCPGSKDVAPRVL-FDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (752)
Q Consensus 310 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~ 371 (752)
|+-++.++-+. .|.++.+..+ ..+.+ .....+.+. .+.||.|.++|+..+
T Consensus 284 G~EfvsgsyDk----sIRIf~~~~~--~SRdiYhtkRMq~V~------~Vk~S~Dskyi~SGS 334 (433)
T KOG0268|consen 284 GQEFVSGSYDK----SIRIFPVNHG--HSRDIYHTKRMQHVF------CVKYSMDSKYIISGS 334 (433)
T ss_pred cchhccccccc----eEEEeecCCC--cchhhhhHhhhheee------EEEEeccccEEEecC
Confidence 99999887333 3666666653 22222 122222221 156999999998877
No 386
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=96.91 E-value=0.003 Score=59.95 Aligned_cols=71 Identities=18% Similarity=0.239 Sum_probs=39.8
Q ss_pred hhHHHHHhCCcE---EEecCCCCCCCCCCCCCCchh---HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH
Q 004456 546 TSSLIFLARRFA---VLAGPSIPIIGEGDKLPNDRF---VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHL 619 (752)
Q Consensus 546 ~~~~~l~~~G~~---v~~~~~~~~~g~g~~~~~~~~---~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~ 619 (752)
..+..|.++||. +++..+ |.+........ .-....++.+.|+.+++.- .. ||-|+||||||.++-.+
T Consensus 20 ~~~~~l~~~GY~~~~vya~ty----g~~~~~~~~~~~~~~~~~~~~l~~fI~~Vl~~T--Ga-kVDIVgHS~G~~iaR~y 92 (219)
T PF01674_consen 20 TLAPYLKAAGYCDSEVYALTY----GSGNGSPSVQNAHMSCESAKQLRAFIDAVLAYT--GA-KVDIVGHSMGGTIARYY 92 (219)
T ss_dssp HHHHHHHHTT--CCCEEEE------S-CCHHTHHHHHHB-HHHHHHHHHHHHHHHHHH--T---EEEEEETCHHHHHHHH
T ss_pred HHHHHHHHcCCCcceeEeccC----CCCCCCCcccccccchhhHHHHHHHHHHHHHhh--CC-EEEEEEcCCcCHHHHHH
Confidence 567799999999 677444 21111000000 1122356666676666543 35 89999999999999888
Q ss_pred HHhC
Q 004456 620 LAHA 623 (752)
Q Consensus 620 ~~~~ 623 (752)
+...
T Consensus 93 i~~~ 96 (219)
T PF01674_consen 93 IKGG 96 (219)
T ss_dssp HHHC
T ss_pred HHHc
Confidence 7643
No 387
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=96.87 E-value=0.16 Score=49.99 Aligned_cols=180 Identities=12% Similarity=0.075 Sum_probs=121.9
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCccee-ccCCCCccccccccceEEecCCcEEEEEecCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~-lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~ 110 (752)
+++..++-|-.++++-. +.+..|-|+|+++|+.+. ||.+-. .++....|+-.-+|+....
T Consensus 153 WVr~vavdP~n~wf~tg----------s~DrtikIwDlatg~LkltltGhi~-----~vr~vavS~rHpYlFs~ge---- 213 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFATG----------SADRTIKIWDLATGQLKLTLTGHIE-----TVRGVAVSKRHPYLFSAGE---- 213 (460)
T ss_pred eEEEEeeCCCceeEEec----------CCCceeEEEEcccCeEEEeecchhh-----eeeeeeecccCceEEEecC----
Confidence 78889999998888774 445678888999999654 432322 4778899988887776522
Q ss_pred CCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCccccCC-c-cceeccccCCCCc
Q 004456 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT-P-AVYTAVEPSPDQK 187 (752)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~~l~~-~-~~~~~~~~SpDGk 187 (752)
..+|..||| ..++.+--. + ..+..++..|.=.
T Consensus 214 ---------------------------------------------dk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTld 248 (460)
T KOG0285|consen 214 ---------------------------------------------DKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLD 248 (460)
T ss_pred ---------------------------------------------CCeeEEEechhhhhHHHhccccceeEEEeccccce
Confidence 158999999 445544433 3 7788888888877
Q ss_pred eEEEEecccCccccccccCccccEEEEecCCceeEEecC-CCCCCCCCcccCCccccccceeeee-CCCceEEEEEeccC
Q 004456 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCD-LPPAEDIPVCYNSVREGMRSISWRA-DKPSTLYWVEAQDR 265 (752)
Q Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~wsp-DG~~~l~~~~~~~~ 265 (752)
.|+-...+ ..+.+||+.++....... .... +..+.+.| |++ ++-.+
T Consensus 249 vl~t~grD-------------st~RvWDiRtr~~V~~l~GH~~~-------------V~~V~~~~~dpq--vit~S---- 296 (460)
T KOG0285|consen 249 VLVTGGRD-------------STIRVWDIRTRASVHVLSGHTNP-------------VASVMCQPTDPQ--VITGS---- 296 (460)
T ss_pred eEEecCCc-------------ceEEEeeecccceEEEecCCCCc-------------ceeEEeecCCCc--eEEec----
Confidence 77655444 378999999885444332 2211 33444444 333 44332
Q ss_pred CCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEee
Q 004456 266 GDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNET 317 (752)
Q Consensus 266 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~ 317 (752)
....+.+||+. .|.....++...-.++.++..|.-..++.++
T Consensus 297 --------~D~tvrlWDl~--agkt~~tlt~hkksvral~lhP~e~~fASas 338 (460)
T KOG0285|consen 297 --------HDSTVRLWDLR--AGKTMITLTHHKKSVRALCLHPKENLFASAS 338 (460)
T ss_pred --------CCceEEEeeec--cCceeEeeecccceeeEEecCCchhhhhccC
Confidence 34478888885 5667777888888888898899877666554
No 388
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.84 E-value=0.056 Score=55.02 Aligned_cols=59 Identities=7% Similarity=0.098 Sum_probs=43.7
Q ss_pred eceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEe
Q 004456 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (752)
Q Consensus 33 ~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~ 105 (752)
+....-+|+|.+|+-. .-..+||++.+.+|...-+.... +. .+..+.+|.||++|+-.+
T Consensus 84 v~al~s~n~G~~l~ag----------~i~g~lYlWelssG~LL~v~~aH---YQ-~ITcL~fs~dgs~iiTgs 142 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAG----------TISGNLYLWELSSGILLNVLSAH---YQ-SITCLKFSDDGSHIITGS 142 (476)
T ss_pred eeeeecCCCceEEEee----------cccCcEEEEEeccccHHHHHHhh---cc-ceeEEEEeCCCcEEEecC
Confidence 6777889999888663 24579999999999866553222 12 467889999999887653
No 389
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=96.84 E-value=0.086 Score=52.31 Aligned_cols=263 Identities=12% Similarity=0.055 Sum_probs=136.5
Q ss_pred CCcceeEEeecCCCCCCCCceeecCCCCCceeceeEe-cCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCC
Q 004456 2 PFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSW-SPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (752)
Q Consensus 2 ~~~~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~-SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~ 80 (752)
+|...+.++++.+ ....++.+.... +....| .+|-..=.|++.. .+..-.||.++......+.+-..
T Consensus 122 sYDg~~riWd~~G----k~~~~~~Ght~~--ik~v~~v~~n~~~~~fvsas------~Dqtl~Lw~~~~~~~~~~~~~~~ 189 (423)
T KOG0313|consen 122 SYDGTSRIWDLKG----KSIKTIVGHTGP--IKSVAWVIKNSSSCLFVSAS------MDQTLRLWKWNVGENKVKALKVC 189 (423)
T ss_pred ecCCeeEEEecCC----ceEEEEecCCcc--eeeeEEEecCCccceEEEec------CCceEEEEEecCchhhhhHHhHh
Confidence 5777888899877 777777755433 443333 4554433444321 13334566665443333332221
Q ss_pred CCccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceeccc-----------ccccccccchh------hccC
Q 004456 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNE-----------QKNIIISRMTD------NLLK 143 (752)
Q Consensus 81 ~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~------~~~~ 143 (752)
.++ ...|...+-.+||..+.-.+.+..-..=..+.....+.....+ .+...+..+.. ....
T Consensus 190 ~GH--k~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~ 267 (423)
T KOG0313|consen 190 RGH--KRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVV 267 (423)
T ss_pred ccc--ccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEE
Confidence 111 1246677778898888766544322210001111111111111 01111111111 1122
Q ss_pred ChhhhhhhhhhcccEEEEEcc-CC-CccccCCccceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCcee
Q 004456 144 DEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (752)
Q Consensus 144 ~~~d~~~~~~~~~~~i~~~~~-~G-~~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 221 (752)
|+.....+..--.-.|.+||+ .| ....++.+..+..+..+|+-+.|+-.+.+. .+.+||...+.-
T Consensus 268 w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr-------------~irl~DPR~~~g 334 (423)
T KOG0313|consen 268 WSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDR-------------HIRLWDPRTGDG 334 (423)
T ss_pred EcCCCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCC-------------ceeecCCCCCCC
Confidence 222111111111236888888 55 677777778888999999999988877664 788998865432
Q ss_pred --EEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeeccc
Q 004456 222 --RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL 299 (752)
Q Consensus 222 --~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 299 (752)
...+-. ++..=+..+.|+|...+.++-.+ ..+.+.+||++. ..+....|...+.
T Consensus 335 s~v~~s~~-----------gH~nwVssvkwsp~~~~~~~S~S------------~D~t~klWDvRS-~k~plydI~~h~D 390 (423)
T KOG0313|consen 335 SVVSQSLI-----------GHKNWVSSVKWSPTNEFQLVSGS------------YDNTVKLWDVRS-TKAPLYDIAGHND 390 (423)
T ss_pred ceeEEeee-----------cchhhhhheecCCCCceEEEEEe------------cCCeEEEEEecc-CCCcceeeccCCc
Confidence 221111 11122567899999987333332 455788888842 1224556677777
Q ss_pred ceeeeeeecCCceEEEe
Q 004456 300 RFRSVSWCDDSLALVNE 316 (752)
Q Consensus 300 ~~~~~~~spDg~~l~~~ 316 (752)
.+..+.|+. +..|+.+
T Consensus 391 Kvl~vdW~~-~~~IvSG 406 (423)
T KOG0313|consen 391 KVLSVDWNE-GGLIVSG 406 (423)
T ss_pred eEEEEeccC-CceEEec
Confidence 788888874 4445544
No 390
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.83 E-value=0.022 Score=56.22 Aligned_cols=132 Identities=6% Similarity=0.007 Sum_probs=74.9
Q ss_pred ccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCC
Q 004456 209 QKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG 288 (752)
Q Consensus 209 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 288 (752)
.+||+||+...+. |.......-. ..+.-.++.++++.+ |+|=. ....+.++++|+...
T Consensus 106 e~IyIydI~~Mkl--LhTI~t~~~n-------~~gl~AlS~n~~n~y-lAyp~----------s~t~GdV~l~d~~nl-- 163 (391)
T KOG2110|consen 106 ESIYIYDIKDMKL--LHTIETTPPN-------PKGLCALSPNNANCY-LAYPG----------STTSGDVVLFDTINL-- 163 (391)
T ss_pred ccEEEEeccccee--ehhhhccCCC-------ccceEeeccCCCCce-EEecC----------CCCCceEEEEEcccc--
Confidence 3799999987643 2222111000 112223444444445 55542 123557888888322
Q ss_pred CCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEE
Q 004456 289 EKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVI 368 (752)
Q Consensus 289 ~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~ 368 (752)
.....+.-..+.+..++||+||..|+.++... . -|.++.+.++ ..+.+...+... ...-+++|+||+++|+
T Consensus 164 ~~v~~I~aH~~~lAalafs~~G~llATASeKG-T--VIRVf~v~~G----~kl~eFRRG~~~--~~IySL~Fs~ds~~L~ 234 (391)
T KOG2110|consen 164 QPVNTINAHKGPLAALAFSPDGTLLATASEKG-T--VIRVFSVPEG----QKLYEFRRGTYP--VSIYSLSFSPDSQFLA 234 (391)
T ss_pred eeeeEEEecCCceeEEEECCCCCEEEEeccCc-e--EEEEEEcCCc----cEeeeeeCCcee--eEEEEEEECCCCCeEE
Confidence 23344556777889999999999999987333 2 3555555553 344433322211 1233478999999998
Q ss_pred Eee
Q 004456 369 AKI 371 (752)
Q Consensus 369 ~~~ 371 (752)
..+
T Consensus 235 ~sS 237 (391)
T KOG2110|consen 235 ASS 237 (391)
T ss_pred Eec
Confidence 887
No 391
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.83 E-value=0.024 Score=61.22 Aligned_cols=204 Identities=13% Similarity=0.136 Sum_probs=127.3
Q ss_pred ceeEEeecCCCCCCCCceeecCCCCCc-eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCc
Q 004456 5 TGIGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (752)
Q Consensus 5 ~~i~~~~~~~~~~~g~~~~i~~~~~~~-~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~ 83 (752)
..|-+++|+.. +..++++.+.+.. .++...|++---.|+... +.++-|-.+|+...+.+..++....
T Consensus 110 G~i~vWdlnk~---~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSG---------SQDg~vK~~DlR~~~S~~t~~~nSE 177 (839)
T KOG0269|consen 110 GVISVWDLNKS---IRNKLLTVFNEHERSANKLDFHSTEPNILISG---------SQDGTVKCWDLRSKKSKSTFRSNSE 177 (839)
T ss_pred CcEEEEecCcc---ccchhhhHhhhhccceeeeeeccCCccEEEec---------CCCceEEEEeeecccccccccccch
Confidence 44667787552 4556666555544 577789999998888853 2334555566667677766655322
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEc
Q 004456 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (752)
Q Consensus 84 ~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~ 163 (752)
.+++..|||--...+++.. ..+.|-+||
T Consensus 178 ----SiRDV~fsp~~~~~F~s~~------------------------------------------------dsG~lqlWD 205 (839)
T KOG0269|consen 178 ----SIRDVKFSPGYGNKFASIH------------------------------------------------DSGYLQLWD 205 (839)
T ss_pred ----hhhceeeccCCCceEEEec------------------------------------------------CCceEEEee
Confidence 4788999997655555432 114566677
Q ss_pred c---CCCccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCC
Q 004456 164 L---DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (752)
Q Consensus 164 ~---~G~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (752)
+ +.-..+++-+ +.+.-+.|+|++.+||-...+ ..+.+|+..+.....+..... ..|
T Consensus 206 lRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRD-------------K~vkiWd~t~~~~~~~~tInT--iap----- 265 (839)
T KOG0269|consen 206 LRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRD-------------KMVKIWDMTDSRAKPKHTINT--IAP----- 265 (839)
T ss_pred ccCchhHHHHhhcccCceEEEeecCCCceeeecCCC-------------ccEEEEeccCCCccceeEEee--cce-----
Confidence 6 3345566666 888999999999999887644 378999998765544332211 112
Q ss_pred ccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeE-Eeecccceeeeeeec
Q 004456 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFRSVSWCD 308 (752)
Q Consensus 240 ~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~~~~~~~~~~~sp 308 (752)
+.-+.|-|+-++.|+-.+. .....|++||+. ..-.+.. +......++.++|-.
T Consensus 266 ----v~rVkWRP~~~~hLAtcsm----------v~dtsV~VWDvr--RPYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 266 ----VGRVKWRPARSYHLATCSM----------VVDTSVHVWDVR--RPYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred ----eeeeeeccCccchhhhhhc----------cccceEEEEeec--cccccceeeeccCccccceeccC
Confidence 4468999998875555532 123378999983 1112222 334444556666744
No 392
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.80 E-value=0.053 Score=57.55 Aligned_cols=135 Identities=16% Similarity=0.165 Sum_probs=78.6
Q ss_pred cEEEEEcc-CC-CccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCC
Q 004456 157 AQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (752)
Q Consensus 157 ~~i~~~~~-~G-~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 233 (752)
..++++|+ +| ....+..+ .-+..++||.|||+.+..+.+. -+.+|+..-+-.-..+.
T Consensus 33 ~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK-------------~VI~W~~klEG~LkYSH------- 92 (1081)
T KOG1538|consen 33 SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADK-------------SVIIWTSKLEGILKYSH------- 92 (1081)
T ss_pred CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCce-------------eEEEecccccceeeecc-------
Confidence 68999999 77 67777766 8889999999999987765553 45567644221111111
Q ss_pred CcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEe--ecccceeeeeeecCCc
Q 004456 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSL 311 (752)
Q Consensus 234 ~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~--~~~~~~~~~~~spDg~ 311 (752)
...+.-|+|.|=... |+.++..+ .-.|.. +.+.+. ....++..-+|..||+
T Consensus 93 -------~D~IQCMsFNP~~h~-LasCsLsd-------------FglWS~------~qK~V~K~kss~R~~~CsWtnDGq 145 (1081)
T KOG1538|consen 93 -------NDAIQCMSFNPITHQ-LASCSLSD-------------FGLWSP------EQKSVSKHKSSSRIICCSWTNDGQ 145 (1081)
T ss_pred -------CCeeeEeecCchHHH-hhhcchhh-------------ccccCh------hhhhHHhhhhheeEEEeeecCCCc
Confidence 122455788887775 55554221 111222 111111 2233455678999999
Q ss_pred eEEEeeecccCceeEEEEcCCCCCccceeccccc
Q 004456 312 ALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV 345 (752)
Q Consensus 312 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 345 (752)
+++.+. .++.|-+.+.. ++++..-++.
T Consensus 146 ylalG~----~nGTIsiRNk~---gEek~~I~Rp 172 (1081)
T KOG1538|consen 146 YLALGM----FNGTISIRNKN---GEEKVKIERP 172 (1081)
T ss_pred EEEEec----cCceEEeecCC---CCcceEEeCC
Confidence 999986 33345555433 3444444443
No 393
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=96.79 E-value=0.023 Score=55.17 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=48.2
Q ss_pred CCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEE
Q 004456 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (752)
Q Consensus 29 ~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (752)
.|..++..++-|+.-++..... .+..|.++++.+.....+..+-+ .....+-+..|++||..|+-.
T Consensus 134 hG~sINeik~~p~~~qlvls~S---------kD~svRlwnI~~~~Cv~VfGG~e-gHrdeVLSvD~~~~gd~i~Sc 199 (385)
T KOG1034|consen 134 HGGSINEIKFHPDRPQLVLSAS---------KDHSVRLWNIQTDVCVAVFGGVE-GHRDEVLSVDFSLDGDRIASC 199 (385)
T ss_pred cCccchhhhcCCCCCcEEEEec---------CCceEEEEeccCCeEEEEecccc-cccCcEEEEEEcCCCCeeecc
Confidence 4557899999999987777653 34788888988888877754422 223356788999999988743
No 394
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=96.78 E-value=0.0099 Score=63.20 Aligned_cols=67 Identities=12% Similarity=0.081 Sum_probs=49.2
Q ss_pred CceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCccee-ccCCCCccccccccceEEecCCcEEEEEec
Q 004456 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (752)
Q Consensus 30 ~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~-lt~~~~~~~~~~~~~~~wspdg~~l~~~~~ 106 (752)
|..+...+.||+|+.||..++. .......|++++...-...+ |..+.- ++..+.|||||++|+.++.
T Consensus 525 GyEv~~l~~s~~gnliASaCKS-----~~~ehAvI~lw~t~~W~~~~~L~~HsL-----TVT~l~FSpdg~~LLsvsR 592 (764)
T KOG1063|consen 525 GYEVYALAISPTGNLIASACKS-----SLKEHAVIRLWNTANWLQVQELEGHSL-----TVTRLAFSPDGRYLLSVSR 592 (764)
T ss_pred ceeEEEEEecCCCCEEeehhhh-----CCccceEEEEEeccchhhhheecccce-----EEEEEEECCCCcEEEEeec
Confidence 4467889999999999998862 12345789999977644433 533322 5789999999999998754
No 395
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.012 Score=53.30 Aligned_cols=112 Identities=18% Similarity=0.120 Sum_probs=61.0
Q ss_pred CceEEEEECCCCCc-CcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCCCC-CCCchhHHHHHHHHHHH
Q 004456 512 PLPCLFWAYPEDYK-SKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDK-LPNDRFVEQLVSSAEAA 589 (752)
Q Consensus 512 ~~P~vv~~HG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~-~~~~~~~~~~~~d~~~~ 589 (752)
+..++|++||.|.- .+..+..+..+...-++.-..+.....+.||.|+..+..+.+-.-++ ..+..+....++-+.-+
T Consensus 100 ~~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~~~kfye~k~np~kyirt~veh~~yv 179 (297)
T KOG3967|consen 100 PQKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNRERKFYEKKRNPQKYIRTPVEHAKYV 179 (297)
T ss_pred ccceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCchhhhhhhcccCcchhccchHHHHHHH
Confidence 35689999997632 22222222222222222222345566789999998332222111111 11222333334434444
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 004456 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 625 (752)
Q Consensus 590 ~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~ 625 (752)
-..+... ..+..++++.||+||+.++.++.+.|+
T Consensus 180 w~~~v~p--a~~~sv~vvahsyGG~~t~~l~~~f~~ 213 (297)
T KOG3967|consen 180 WKNIVLP--AKAESVFVVAHSYGGSLTLDLVERFPD 213 (297)
T ss_pred HHHHhcc--cCcceEEEEEeccCChhHHHHHHhcCC
Confidence 4444433 346789999999999999999999875
No 396
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=96.72 E-value=0.0069 Score=65.48 Aligned_cols=87 Identities=24% Similarity=0.165 Sum_probs=58.7
Q ss_pred HHHH-hCCcEEEecCCCCCCCCCCCCCCc---------hhHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEeChHHHHHH
Q 004456 549 LIFL-ARRFAVLAGPSIPIIGEGDKLPND---------RFVEQLVSSAEAAVEEVVRRG-VADPSRIAVGGHSYGAFMTA 617 (752)
Q Consensus 549 ~~l~-~~G~~v~~~~~~~~~g~g~~~~~~---------~~~~~~~~d~~~~~~~l~~~~-~~d~~~i~l~G~S~GG~~a~ 617 (752)
..|| +.|-.+++ ..-+=||++.+-. -..++.+.|+...+++++.+. ..+..+++++|.|+||.+|+
T Consensus 52 ~~lA~~~~a~~v~---lEHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~~~~~~~~pwI~~GgSY~G~Laa 128 (434)
T PF05577_consen 52 WELAKEFGALVVA---LEHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKKYNTAPNSPWIVFGGSYGGALAA 128 (434)
T ss_dssp HHHHHHHTEEEEE---E--TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHHTTTGCC--EEEEEETHHHHHHH
T ss_pred HHHHHHcCCcEEE---eehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHhhcCCCCCCEEEECCcchhHHHH
Confidence 3445 46666666 3444566664321 124577899999999998654 34556999999999999999
Q ss_pred HHHHhCCCceeEEEEccCCCC
Q 004456 618 HLLAHAPHLFCCGIARSGSYN 638 (752)
Q Consensus 618 ~~~~~~p~~~~~~v~~~~~~~ 638 (752)
++-.++|+.|.++++.+++..
T Consensus 129 w~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 129 WFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp HHHHH-TTT-SEEEEET--CC
T ss_pred HHHhhCCCeeEEEEeccceee
Confidence 999999999999999988754
No 397
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=96.72 E-value=0.099 Score=50.53 Aligned_cols=131 Identities=15% Similarity=0.138 Sum_probs=83.1
Q ss_pred eEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCc-hhHHHHHhCCcEEEe
Q 004456 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP-TSSLIFLARRFAVLA 560 (752)
Q Consensus 482 ~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~G~~v~~ 560 (752)
.++..+.+.-| .++..++--+. ++.|++|-.|.-+-+..+ .|.++.. .....+.++ |.++.
T Consensus 22 ~~e~~V~T~~G-~v~V~V~Gd~~------~~kpaiiTyhDlglN~~s----------cFq~ff~~p~m~ei~~~-fcv~H 83 (326)
T KOG2931|consen 22 CQEHDVETAHG-VVHVTVYGDPK------GNKPAIITYHDLGLNHKS----------CFQGFFNFPDMAEILEH-FCVYH 83 (326)
T ss_pred ceeeeeccccc-cEEEEEecCCC------CCCceEEEecccccchHh----------HhHHhhcCHhHHHHHhh-eEEEe
Confidence 45556665555 57777774322 247889999986543211 1222221 224456666 88887
Q ss_pred cCCCCCCCCCCCCCC----chhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004456 561 GPSIPIIGEGDKLPN----DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (752)
Q Consensus 561 ~~~~~~~g~g~~~~~----~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~ 636 (752)
++. ++...|....+ -...+++.+++..+++++. -..|.-+|--.|+++-.++|..||+++-+.|++.+.
T Consensus 84 V~~-PGqe~gAp~~p~~y~yPsmd~LAd~l~~VL~~f~------lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~ 156 (326)
T KOG2931|consen 84 VDA-PGQEDGAPSFPEGYPYPSMDDLADMLPEVLDHFG------LKSVIGMGVGAGAYILARFALNHPERVLGLVLINCD 156 (326)
T ss_pred cCC-CccccCCccCCCCCCCCCHHHHHHHHHHHHHhcC------cceEEEecccccHHHHHHHHhcChhheeEEEEEecC
Confidence 443 22223322222 2335566777777777663 246899999999999999999999999999999875
Q ss_pred C
Q 004456 637 Y 637 (752)
Q Consensus 637 ~ 637 (752)
.
T Consensus 157 ~ 157 (326)
T KOG2931|consen 157 P 157 (326)
T ss_pred C
Confidence 3
No 398
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=96.72 E-value=0.56 Score=47.05 Aligned_cols=123 Identities=15% Similarity=0.207 Sum_probs=77.5
Q ss_pred cceeccccCCCCceEEEEecccCccccccccCccccEEEEecC-CceeEEecCCCCCCCCCcccCCccccccceeeeeCC
Q 004456 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (752)
Q Consensus 175 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG 253 (752)
+.+..+.|.|=...++-+..+. ..+-+|.+- .+..+.++.. . ..+.++...+.-+.|.|--
T Consensus 82 ~~vLDi~w~PfnD~vIASgSeD------------~~v~vW~IPe~~l~~~ltep-v-----v~L~gH~rrVg~V~wHPtA 143 (472)
T KOG0303|consen 82 APVLDIDWCPFNDCVIASGSED------------TKVMVWQIPENGLTRDLTEP-V-----VELYGHQRRVGLVQWHPTA 143 (472)
T ss_pred ccccccccCccCCceeecCCCC------------ceEEEEECCCcccccCcccc-e-----EEEeecceeEEEEeecccc
Confidence 7778999999988877665443 367777653 2222222211 0 0112222235568999988
Q ss_pred CceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCC
Q 004456 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (752)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 333 (752)
.. +++.+ ...+.+.+|+++ +++...-......+.+.+|+-||..|+.+. ....|.++|...
T Consensus 144 ~N-VLlsa-----------g~Dn~v~iWnv~---tgeali~l~hpd~i~S~sfn~dGs~l~Ttc----kDKkvRv~dpr~ 204 (472)
T KOG0303|consen 144 PN-VLLSA-----------GSDNTVSIWNVG---TGEALITLDHPDMVYSMSFNRDGSLLCTTC----KDKKVRVIDPRR 204 (472)
T ss_pred hh-hHhhc-----------cCCceEEEEecc---CCceeeecCCCCeEEEEEeccCCceeeeec----ccceeEEEcCCC
Confidence 87 54443 244589999993 443332223666788999999999998887 444689999877
Q ss_pred C
Q 004456 334 K 334 (752)
Q Consensus 334 ~ 334 (752)
+
T Consensus 205 ~ 205 (472)
T KOG0303|consen 205 G 205 (472)
T ss_pred C
Confidence 4
No 399
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.70 E-value=0.0085 Score=58.72 Aligned_cols=134 Identities=10% Similarity=0.072 Sum_probs=80.7
Q ss_pred cEEEEEcc-CC-CccccCCccceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCce-eEEecCCCCCCCC
Q 004456 157 AQLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDI 233 (752)
Q Consensus 157 ~~i~~~~~-~G-~~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~ 233 (752)
..|+++|+ .+ ..+.+...-.-..++|+| .-+.++..++ + .++|.+|...-+ ...+.....
T Consensus 210 rsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~E-D-----------~nlY~~DmR~l~~p~~v~~dhv---- 272 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANE-D-----------HNLYTYDMRNLSRPLNVHKDHV---- 272 (433)
T ss_pred CceEEEecccCCccceeeeeccccceecCc-cccceeeccc-c-----------ccceehhhhhhcccchhhcccc----
Confidence 57999998 55 556665555566899999 3344333333 2 478888764221 111111110
Q ss_pred CcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEE--eecccceeeeeeecCCc
Q 004456 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL--HKLDLRFRSVSWCDDSL 311 (752)
Q Consensus 234 ~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l--~~~~~~~~~~~~spDg~ 311 (752)
-.+-++.|||-|+. ++-.+ ....|.++.+ ..+..+.+ +..-..+..+.||-|++
T Consensus 273 --------sAV~dVdfsptG~E-fvsgs------------yDksIRIf~~---~~~~SRdiYhtkRMq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 273 --------SAVMDVDFSPTGQE-FVSGS------------YDKSIRIFPV---NHGHSRDIYHTKRMQHVFCVKYSMDSK 328 (433)
T ss_pred --------eeEEEeccCCCcch-hcccc------------ccceEEEeec---CCCcchhhhhHhhhheeeEEEEecccc
Confidence 11457899999998 43332 3335666666 23333333 34556788899999999
Q ss_pred eEEEeeecccCceeEEEEcCCC
Q 004456 312 ALVNETWYKTSQTRTWLVCPGS 333 (752)
Q Consensus 312 ~l~~~~~~~~~~~~l~~~~~~~ 333 (752)
+|+.++++ .+-+||......
T Consensus 329 yi~SGSdd--~nvRlWka~Ase 348 (433)
T KOG0268|consen 329 YIISGSDD--GNVRLWKAKASE 348 (433)
T ss_pred EEEecCCC--cceeeeecchhh
Confidence 99887732 455788877654
No 400
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=96.70 E-value=0.014 Score=62.23 Aligned_cols=117 Identities=9% Similarity=0.025 Sum_probs=77.0
Q ss_pred cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCC-CCCCCcccCCccccccceeeeeCC
Q 004456 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPP-AEDIPVCYNSVREGMRSISWRADK 253 (752)
Q Consensus 175 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~wspDG 253 (752)
.-....+.-|.-|+++....++ +|.+++..+++.+....... .++.+ --+...|.|
T Consensus 597 tTlYDm~Vdp~~k~v~t~cQDr-------------nirif~i~sgKq~k~FKgs~~~eG~l----------IKv~lDPSg 653 (1080)
T KOG1408|consen 597 TTLYDMAVDPTSKLVVTVCQDR-------------NIRIFDIESGKQVKSFKGSRDHEGDL----------IKVILDPSG 653 (1080)
T ss_pred ceEEEeeeCCCcceEEEEeccc-------------ceEEEeccccceeeeecccccCCCce----------EEEEECCCc
Confidence 4456777777777777776553 89999998776555544432 22222 246777888
Q ss_pred CceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCC
Q 004456 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (752)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 333 (752)
-+ |+-.. ....|.++|.. .+....+++....-+..+.|++|=++|+-.+ +.+.|++|.+..
T Consensus 654 iY-~atSc------------sdktl~~~Df~--sgEcvA~m~GHsE~VTG~kF~nDCkHlISvs----gDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 654 IY-LATSC------------SDKTLCFVDFV--SGECVAQMTGHSEAVTGVKFLNDCKHLISVS----GDGCIFVWKLPL 714 (1080)
T ss_pred cE-EEEee------------cCCceEEEEec--cchhhhhhcCcchheeeeeecccchhheeec----CCceEEEEECch
Confidence 65 44332 22256777763 3444556777777788999999999999877 555777777653
No 401
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.70 E-value=0.062 Score=54.71 Aligned_cols=142 Identities=11% Similarity=0.037 Sum_probs=85.3
Q ss_pred cEEEEEcc-CCCccccCCc--cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCC
Q 004456 157 AQLVLGSL-DGTAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (752)
Q Consensus 157 ~~i~~~~~-~G~~~~l~~~--~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 233 (752)
++||+|.+ +|..-.+... ..+.-+.||-||++|+-.+.+. .+.+|.+..- +.........
T Consensus 103 g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg-------------~V~vW~l~~l----v~a~~~~~~~ 165 (476)
T KOG0646|consen 103 GNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDG-------------AVLVWLLTDL----VSADNDHSVK 165 (476)
T ss_pred CcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCc-------------cEEEEEEEee----cccccCCCcc
Confidence 68999999 8865444333 7788999999999998776664 6777764310 0000000111
Q ss_pred C-cccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCce
Q 004456 234 P-VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLA 312 (752)
Q Consensus 234 ~-~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~ 312 (752)
| ..|..+...+.++...+-|....++++. ....+.+||+ ..+..-.-......+..++..|-.+.
T Consensus 166 p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS-----------~D~t~k~wdl---S~g~LLlti~fp~si~av~lDpae~~ 231 (476)
T KOG0646|consen 166 PLHIFSDHTLSITDLQIGSGGTNARLYTAS-----------EDRTIKLWDL---SLGVLLLTITFPSSIKAVALDPAERV 231 (476)
T ss_pred ceeeeccCcceeEEEEecCCCccceEEEec-----------CCceEEEEEe---ccceeeEEEecCCcceeEEEcccccE
Confidence 1 1233444556677776666543444432 2336777777 44433222345566778888999988
Q ss_pred EEEeeecccCceeEEEEcCCC
Q 004456 313 LVNETWYKTSQTRTWLVCPGS 333 (752)
Q Consensus 313 l~~~~~~~~~~~~l~~~~~~~ 333 (752)
+++++ ..+.||+.++..
T Consensus 232 ~yiGt----~~G~I~~~~~~~ 248 (476)
T KOG0646|consen 232 VYIGT----EEGKIFQNLLFK 248 (476)
T ss_pred EEecC----CcceEEeeehhc
Confidence 88876 344577777665
No 402
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.2 Score=52.90 Aligned_cols=207 Identities=12% Similarity=0.032 Sum_probs=122.3
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (752)
.-.....+|+|.++.-.. .....+.+++.++.....-..... ....++++|+++.++.+-...
T Consensus 75 ~p~~i~v~~~~~~vyv~~---------~~~~~v~vid~~~~~~~~~~~vG~-----~P~~~~~~~~~~~vYV~n~~~--- 137 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTT---------GDSNTVSVIDTATNTVLGSIPVGL-----GPVGLAVDPDGKYVYVANAGN--- 137 (381)
T ss_pred cccceeeCCCCCeEEEec---------CCCCeEEEEcCcccceeeEeeecc-----CCceEEECCCCCEEEEEeccc---
Confidence 345568888888774432 224788888855544333221121 235779999999998873210
Q ss_pred CCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CCCccc-cCCccceeccccCCCCceE
Q 004456 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FGTPAVYTAVEPSPDQKYV 189 (752)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G~~~~-l~~~~~~~~~~~SpDGk~l 189 (752)
....+..+|. +++... +.........+++|||+++
T Consensus 138 -------------------------------------------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~v 174 (381)
T COG3391 138 -------------------------------------------GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKV 174 (381)
T ss_pred -------------------------------------------CCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeE
Confidence 1156778887 343322 2222234789999999999
Q ss_pred EEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCc
Q 004456 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (752)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~ 269 (752)
+...... +.+.+.|.++....+ ...... .....++..+.++|||++ +|.....+
T Consensus 175 yv~~~~~------------~~v~vi~~~~~~v~~-~~~~~~-------~~~~~~P~~i~v~~~g~~-~yV~~~~~----- 228 (381)
T COG3391 175 YVTNSDD------------NTVSVIDTSGNSVVR-GSVGSL-------VGVGTGPAGIAVDPDGNR-VYVANDGS----- 228 (381)
T ss_pred EEEecCC------------CeEEEEeCCCcceec-cccccc-------cccCCCCceEEECCCCCE-EEEEeccC-----
Confidence 9986332 467888877665554 221111 011233668999999997 66664221
Q ss_pred cccCccceEEeccCCCCCCCCCeEE-eeccc-ceeeeeeecCCceEEEeeecccCceeEEEEcCCCC
Q 004456 270 VEVSPRDIIYTQPAEPAEGEKPEIL-HKLDL-RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (752)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~~~~l-~~~~~-~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 334 (752)
....+..+|. ..+..... ..... .......+|+|+.++..... ...+.++|..+.
T Consensus 229 ----~~~~v~~id~---~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~---~~~V~vid~~~~ 285 (381)
T COG3391 229 ----GSNNVLKIDT---ATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ---GGTVSVIDGATD 285 (381)
T ss_pred ----CCceEEEEeC---CCceEEEeccccccCCCCceeECCCCCEEEEEecC---CCeEEEEeCCCC
Confidence 1347777777 33333332 11111 34557789999988776433 345888887663
No 403
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.02 Score=53.84 Aligned_cols=58 Identities=12% Similarity=0.029 Sum_probs=38.1
Q ss_pred EEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHHHH
Q 004456 676 ILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 740 (752)
Q Consensus 676 ~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~ 740 (752)
+.++...+|..+| -..+..+.+.+. .+++...+ +||.-........+.+.|.+-|++.
T Consensus 309 ~ivv~A~~D~Yip--r~gv~~lQ~~WP----g~eVr~~e-gGHVsayl~k~dlfRR~I~d~L~R~ 366 (371)
T KOG1551|consen 309 IIVVQAKEDAYIP--RTGVRSLQEIWP----GCEVRYLE-GGHVSAYLFKQDLFRRAIVDGLDRL 366 (371)
T ss_pred EEEEEecCCcccc--ccCcHHHHHhCC----CCEEEEee-cCceeeeehhchHHHHHHHHHHHhh
Confidence 6778889999998 655555555553 34556665 6897544444556677777777664
No 404
>KOG4328 consensus WD40 protein [Function unknown]
Probab=96.65 E-value=0.12 Score=52.55 Aligned_cols=261 Identities=11% Similarity=0.115 Sum_probs=141.5
Q ss_pred cceeccccCCCCc-eEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCC
Q 004456 175 AVYTAVEPSPDQK-YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (752)
Q Consensus 175 ~~~~~~~~SpDGk-~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG 253 (752)
+.+..++|.|--. .|+.. .+. .++|-+||+.+.+... ..-..|+.+...+..+.|+|..
T Consensus 187 ~Rit~l~fHPt~~~~lva~-GdK-----------~G~VG~Wn~~~~~~d~--------d~v~~f~~hs~~Vs~l~F~P~n 246 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAV-GDK-----------GGQVGLWNFGTQEKDK--------DGVYLFTPHSGPVSGLKFSPAN 246 (498)
T ss_pred cceEEEEecccCcceEEEE-ccC-----------CCcEEEEecCCCCCcc--------CceEEeccCCccccceEecCCC
Confidence 6788899999876 44443 222 2589999997332111 0011122223336688999987
Q ss_pred CceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEee---cccceeeeeeecCCceEEEeeecccCceeEEEEc
Q 004456 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK---LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVC 330 (752)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~---~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~ 330 (752)
...+|..+ +.+.|...|+ ++.....+.. .........++.+...+++..+.+ .-.++...
T Consensus 247 ~s~i~ssS------------yDGtiR~~D~---~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G--~f~~iD~R 309 (498)
T KOG4328|consen 247 TSQIYSSS------------YDGTIRLQDF---EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG--NFNVIDLR 309 (498)
T ss_pred hhheeeec------------cCceeeeeee---cchhhHHHhhcCccceeeeeccccCCCccEEEeeccc--ceEEEEee
Confidence 76344443 5567777777 4444333322 333456677888899899987444 33455555
Q ss_pred CCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeE-
Q 004456 331 PGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKER- 409 (752)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~- 409 (752)
+.+.+.+...+.+..... ++..|--.+++.+.. ....+.+||+..-..++
T Consensus 310 ~~~s~~~~~~lh~kKI~s---------v~~NP~~p~~laT~s--------------------~D~T~kIWD~R~l~~K~s 360 (498)
T KOG4328|consen 310 TDGSEYENLRLHKKKITS---------VALNPVCPWFLATAS--------------------LDQTAKIWDLRQLRGKAS 360 (498)
T ss_pred cCCccchhhhhhhcccce---------eecCCCCchheeecc--------------------cCcceeeeehhhhcCCCC
Confidence 555433445555554443 345666666555541 11236677864322111
Q ss_pred --EeeccchhhhhceeeeecCCcceecccCCCEEEEEEecCCCCcEEEEEECC----C-----------CCeeEeecCCC
Q 004456 410 --IWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWP----L-----------KKSSQITNFPH 472 (752)
Q Consensus 410 --l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~----~-----------g~~~~lt~~~~ 472 (752)
|...+.. .......|||+|..|+.+..... |.++|.. . ..-+.||.+.+
T Consensus 361 p~lst~~Hr----------rsV~sAyFSPs~gtl~TT~~D~~----IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA 426 (498)
T KOG4328|consen 361 PFLSTLPHR----------RSVNSAYFSPSGGTLLTTCQDNE----IRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKA 426 (498)
T ss_pred cceeccccc----------ceeeeeEEcCCCCceEeeccCCc----eEEeecccccccCCccceeeccCcccccccchhh
Confidence 2222211 11123578999999877764433 5555541 1 11123333333
Q ss_pred CC-CCcCCC----ceEEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECC
Q 004456 473 PY-PTLASL----QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYP 521 (752)
Q Consensus 473 ~~-~~~~~~----~~~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG 521 (752)
.| |+...+ ....|.+-...+.++.+.++.|... ..|.|+-+|.
T Consensus 427 ~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~------tI~~vn~~HP 474 (498)
T KOG4328|consen 427 AWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS------TIPSVNEFHP 474 (498)
T ss_pred eeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc------ccccceeecc
Confidence 33 211111 2444666666777888888887651 2788988887
No 405
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.65 E-value=0.57 Score=45.21 Aligned_cols=58 Identities=22% Similarity=0.312 Sum_probs=36.1
Q ss_pred eeEecCCCCeEEEeeccccccccccCcceEEEEEcccC--cceeccCCCCccccccccceEEecCCcEEEEE
Q 004456 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG--EAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (752)
Q Consensus 35 ~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g--~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (752)
..+.++|||.||.+-. ..|-|...... ....-.+.+... ++.++.++||||+..|+++
T Consensus 2 ~~~~~~~Gk~lAi~qd-----------~~iEiRsa~Ddf~si~~kcqVpkD~-~PQWRkl~WSpD~tlLa~a 61 (282)
T PF15492_consen 2 HLALSSDGKLLAILQD-----------QCIEIRSAKDDFSSIIGKCQVPKDP-NPQWRKLAWSPDCTLLAYA 61 (282)
T ss_pred ceeecCCCcEEEEEec-----------cEEEEEeccCCchheeEEEecCCCC-CchheEEEECCCCcEEEEE
Confidence 3578999999999643 44445444332 111111123322 3467899999999999997
No 406
>KOG4328 consensus WD40 protein [Function unknown]
Probab=96.61 E-value=1 Score=46.13 Aligned_cols=197 Identities=11% Similarity=0.093 Sum_probs=111.5
Q ss_pred eeceeEecCCCC-eEEEeeccccccccccCcceEEEEEcccCcc---eeccCCCCccccccccceEEecCCc-EEEEEec
Q 004456 32 KINFVSWSPDGK-RIAFSVRVDEEDNVSSCKLRVWIADAETGEA---KPLFESPDICLNAVFGSFVWVNNST-LLIFTIP 106 (752)
Q Consensus 32 ~~~~~~~SPDG~-~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~---~~lt~~~~~~~~~~~~~~~wspdg~-~l~~~~~ 106 (752)
++....|.|--. .++.+. +..++|=++++.+.++ +-..+.++ ...|..+.|+|... .|+.++.
T Consensus 188 Rit~l~fHPt~~~~lva~G---------dK~G~VG~Wn~~~~~~d~d~v~~f~~h---s~~Vs~l~F~P~n~s~i~ssSy 255 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVG---------DKGGQVGLWNFGTQEKDKDGVYLFTPH---SGPVSGLKFSPANTSQIYSSSY 255 (498)
T ss_pred ceEEEEecccCcceEEEEc---------cCCCcEEEEecCCCCCccCceEEeccC---CccccceEecCCChhheeeecc
Confidence 688899999876 555532 3446666667653322 11212222 22477888988644 3443322
Q ss_pred CCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCC-Ccccc---C-Cccceeccc
Q 004456 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDF---G-TPAVYTAVE 181 (752)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G-~~~~l---~-~~~~~~~~~ 181 (752)
.+.|.+.|+++ ....+ . ....++++.
T Consensus 256 -------------------------------------------------DGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d 286 (498)
T KOG4328|consen 256 -------------------------------------------------DGTIRLQDFEGNISEEVLSLDTDNIWFSSLD 286 (498)
T ss_pred -------------------------------------------------CceeeeeeecchhhHHHhhcCccceeeeecc
Confidence 15788888855 22222 1 226788999
Q ss_pred cCCCCceEEEEecccCccccccccCccccEEEEecCCc--eeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEE
Q 004456 182 PSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK--LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYW 259 (752)
Q Consensus 182 ~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~ 259 (752)
++-+...+++...-+ ..-++|+.+. +...+.-.... +..+++.|--.+ ++.
T Consensus 287 ~~~e~~~vl~~~~~G-------------~f~~iD~R~~~s~~~~~~lh~kK-------------I~sv~~NP~~p~-~la 339 (498)
T KOG4328|consen 287 FSAESRSVLFGDNVG-------------NFNVIDLRTDGSEYENLRLHKKK-------------ITSVALNPVCPW-FLA 339 (498)
T ss_pred ccCCCccEEEeeccc-------------ceEEEEeecCCccchhhhhhhcc-------------cceeecCCCCch-hee
Confidence 999988888875442 4455665433 22222222211 567888888776 333
Q ss_pred EEeccCCCCccccCccceEEeccCCCCCCCCCeEEe--ecccceeeeeeecCCceEEEeeecccCceeEEEEcC
Q 004456 260 VEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (752)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~--~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~ 331 (752)
++ .-+..+.+||+....+.....|. .....+.+..|||+|-.|+... ....|.++|.
T Consensus 340 T~-----------s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~----~D~~IRv~ds 398 (498)
T KOG4328|consen 340 TA-----------SLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC----QDNEIRVFDS 398 (498)
T ss_pred ec-----------ccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec----cCCceEEeec
Confidence 32 13335668887543332211232 3445678888999988888776 2234555554
No 407
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=96.59 E-value=0.32 Score=51.14 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=30.8
Q ss_pred ceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceecccccc
Q 004456 300 RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVF 346 (752)
Q Consensus 300 ~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 346 (752)
.+..+.|+.||-.+++++ ..+.++++|+.+ ..+..+-++..
T Consensus 230 svTal~F~d~gL~~aVGt----s~G~v~iyDLRa--~~pl~~kdh~~ 270 (703)
T KOG2321|consen 230 SVTALKFRDDGLHVAVGT----STGSVLIYDLRA--SKPLLVKDHGY 270 (703)
T ss_pred cceEEEecCCceeEEeec----cCCcEEEEEccc--CCceeecccCC
Confidence 478889999999999987 556799999988 45555554443
No 408
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.14 Score=48.25 Aligned_cols=54 Identities=17% Similarity=0.160 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC--ceeEEEEccCC
Q 004456 582 LVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH--LFCCGIARSGS 636 (752)
Q Consensus 582 ~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~--~~~~~v~~~~~ 636 (752)
+...+..-++++++.-.- ..||.++|||-|++|.+.++-..-. .+..+++.-|.
T Consensus 91 L~~QV~HKlaFik~~~Pk-~~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFPT 146 (301)
T KOG3975|consen 91 LQDQVDHKLAFIKEYVPK-DRKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFPT 146 (301)
T ss_pred hhhHHHHHHHHHHHhCCC-CCEEEEEecchhHHHHHHHhhhcccccceEEEEEecch
Confidence 345566778888776433 3689999999999999999874322 34555555543
No 409
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.37 Score=45.15 Aligned_cols=184 Identities=13% Similarity=0.076 Sum_probs=84.3
Q ss_pred cEEEEEcc-CCCccccC---Cc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCC
Q 004456 157 AQLVLGSL-DGTAKDFG---TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (752)
Q Consensus 157 ~~i~~~~~-~G~~~~l~---~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 231 (752)
+++.++.- +|.-.+.. .+ ..+.+++|.|-+--+.......+ ++|-+.+.++.. .-
T Consensus 80 gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSD-----------G~vsvl~~~~~g---------~w 139 (299)
T KOG1332|consen 80 GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSD-----------GKVSVLTYDSSG---------GW 139 (299)
T ss_pred ceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCC-----------CcEEEEEEcCCC---------Cc
Confidence 56777776 55433333 23 67888999998754444322211 244444333210 01
Q ss_pred CCCcccCCccccccceeeeeC---CCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeec
Q 004456 232 DIPVCYNSVREGMRSISWRAD---KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCD 308 (752)
Q Consensus 232 ~~~~~~~~~~~~~~~~~wspD---G~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~sp 308 (752)
........+..|+..++|.|- |. ++-................+.+-++..+...=...+.|.....-+++++|.|
T Consensus 140 ~t~ki~~aH~~GvnsVswapa~~~g~--~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP 217 (299)
T KOG1332|consen 140 TTSKIVFAHEIGVNSVSWAPASAPGS--LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAP 217 (299)
T ss_pred cchhhhhccccccceeeecCcCCCcc--ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhcc
Confidence 111222344566778899887 52 1111000000000001122244445441000012233555556678899998
Q ss_pred CC---ce-EEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEee
Q 004456 309 DS---LA-LVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (752)
Q Consensus 309 Dg---~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~ 371 (752)
.- +. |+..+ ..+.--||..+.+...-+.+.|.+.. + .--.++||..|..|++..
T Consensus 218 ~~gl~~s~iAS~S--qDg~viIwt~~~e~e~wk~tll~~f~--~-----~~w~vSWS~sGn~LaVs~ 275 (299)
T KOG1332|consen 218 SVGLPKSTIASCS--QDGTVIIWTKDEEYEPWKKTLLEEFP--D-----VVWRVSWSLSGNILAVSG 275 (299)
T ss_pred ccCCCceeeEEec--CCCcEEEEEecCccCcccccccccCC--c-----ceEEEEEeccccEEEEec
Confidence 73 22 22222 22344566666443322223333311 1 011267999999988875
No 410
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.43 E-value=0.7 Score=45.16 Aligned_cols=131 Identities=17% Similarity=0.027 Sum_probs=67.7
Q ss_pred cEEEEEcc-CC-CccccCCccceeccc--cCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCC
Q 004456 157 AQLVLGSL-DG-TAKDFGTPAVYTAVE--PSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (752)
Q Consensus 157 ~~i~~~~~-~G-~~~~l~~~~~~~~~~--~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 232 (752)
++|..+|+ +| +..+..-........ ..+++++|++.... ..|+.+|..+++...-...+..
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------------~~l~~~d~~tG~~~W~~~~~~~-- 67 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGD-------------GNLYALDAKTGKVLWRFDLPGP-- 67 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETT-------------SEEEEEETTTSEEEEEEECSSC--
T ss_pred CEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCC-------------CEEEEEECCCCCEEEEeecccc--
Confidence 57888888 77 444332211122222 44577788777433 4899999876655433333221
Q ss_pred CCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEE-eecc----cceeeeeee
Q 004456 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL-HKLD----LRFRSVSWC 307 (752)
Q Consensus 233 ~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-~~~~----~~~~~~~~s 307 (752)
+.... ..++.. +++.. ..+.++.+|+ .+++...- .... .........
T Consensus 68 -----------~~~~~-~~~~~~-v~v~~------------~~~~l~~~d~---~tG~~~W~~~~~~~~~~~~~~~~~~~ 119 (238)
T PF13360_consen 68 -----------ISGAP-VVDGGR-VYVGT------------SDGSLYALDA---KTGKVLWSIYLTSSPPAGVRSSSSPA 119 (238)
T ss_dssp -----------GGSGE-EEETTE-EEEEE------------TTSEEEEEET---TTSCEEEEEEE-SSCTCSTB--SEEE
T ss_pred -----------cccee-eecccc-ccccc------------ceeeeEeccc---CCcceeeeeccccccccccccccCce
Confidence 11112 334443 55553 2237888887 34443322 2211 111223333
Q ss_pred cCCceEEEeeecccCceeEEEEcCCCC
Q 004456 308 DDSLALVNETWYKTSQTRTWLVCPGSK 334 (752)
Q Consensus 308 pDg~~l~~~~~~~~~~~~l~~~~~~~~ 334 (752)
.+++.+++.. ....|+.+|+.++
T Consensus 120 ~~~~~~~~~~----~~g~l~~~d~~tG 142 (238)
T PF13360_consen 120 VDGDRLYVGT----SSGKLVALDPKTG 142 (238)
T ss_dssp EETTEEEEEE----TCSEEEEEETTTT
T ss_pred EecCEEEEEe----ccCcEEEEecCCC
Confidence 4477676655 2456899998875
No 411
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=96.43 E-value=0.021 Score=56.32 Aligned_cols=138 Identities=11% Similarity=0.190 Sum_probs=85.4
Q ss_pred cCcceEEEEEcccCc----ceeccCCCCccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceeccccccccc
Q 004456 59 SCKLRVWIADAETGE----AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIII 134 (752)
Q Consensus 59 ~~~~~l~v~~~~~g~----~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (752)
+....|+++...+|. .++++.+.. .|..+.|||..+.++++...
T Consensus 231 Dc~~~I~lw~~~~g~W~vd~~Pf~gH~~-----SVEDLqWSptE~~vfaScS~--------------------------- 278 (440)
T KOG0302|consen 231 DCVKGIHLWEPSTGSWKVDQRPFTGHTK-----SVEDLQWSPTEDGVFASCSC--------------------------- 278 (440)
T ss_pred ccccceEeeeeccCceeecCcccccccc-----chhhhccCCccCceEEeeec---------------------------
Confidence 566788888877765 455554333 67899999999988876431
Q ss_pred ccchhhccCChhhhhhhhhhcccEEEEEcc-CC--CccccCCc--cceeccccCCCCceEEEEecccCccccccccCccc
Q 004456 135 SRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQ 209 (752)
Q Consensus 135 ~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G--~~~~l~~~--~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~ 209 (752)
.+.|.++|. .| +....+.. ..+.-++|+.+-..|++...+ +
T Consensus 279 ---------------------DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~Dd-------------G 324 (440)
T KOG0302|consen 279 ---------------------DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDD-------------G 324 (440)
T ss_pred ---------------------CceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCC-------------c
Confidence 156777787 55 23333333 788899999887766665433 4
Q ss_pred cEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccC
Q 004456 210 KVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPA 283 (752)
Q Consensus 210 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 283 (752)
.+.+||+..-+.. .+.+ .|..+...+..+.|+|.-.. ++.++. ..+++.+||+
T Consensus 325 t~~iwDLR~~~~~----~pVA-----~fk~Hk~pItsieW~p~e~s-~iaasg-----------~D~QitiWDl 377 (440)
T KOG0302|consen 325 TLSIWDLRQFKSG----QPVA-----TFKYHKAPITSIEWHPHEDS-VIAASG-----------EDNQITIWDL 377 (440)
T ss_pred eEEEEEhhhccCC----Ccce-----eEEeccCCeeEEEeccccCc-eEEecc-----------CCCcEEEEEe
Confidence 7889998632211 0000 11111223778999998876 333321 3346777776
No 412
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.37 E-value=0.55 Score=45.73 Aligned_cols=215 Identities=14% Similarity=0.088 Sum_probs=112.5
Q ss_pred cceeEEeecCCCCCCCCceeecCCC-CCceeceeEecCCCC--eEEEeeccccccccccCcceEEEEEcccCcc-eeccC
Q 004456 4 FTGIGIHRLLPDDSLGPEKEVHGYP-DGAKINFVSWSPDGK--RIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFE 79 (752)
Q Consensus 4 ~~~i~~~~~~~~~~~g~~~~i~~~~-~~~~~~~~~~SPDG~--~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~-~~lt~ 79 (752)
.-.|.++++.. .+++..+- ....++...|+|+-. +|... ..+++|-++++..=+. .-+-.
T Consensus 62 DetI~IYDm~k------~~qlg~ll~HagsitaL~F~~~~S~shLlS~----------sdDG~i~iw~~~~W~~~~slK~ 125 (362)
T KOG0294|consen 62 DETIHIYDMRK------RKQLGILLSHAGSITALKFYPPLSKSHLLSG----------SDDGHIIIWRVGSWELLKSLKA 125 (362)
T ss_pred CCcEEEEeccc------hhhhcceeccccceEEEEecCCcchhheeee----------cCCCcEEEEEcCCeEEeeeecc
Confidence 34577777744 22222211 122688888888875 56553 4456788877544321 11111
Q ss_pred CCCccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEE
Q 004456 80 SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (752)
Q Consensus 80 ~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i 159 (752)
+.+ .|..++..|.|+.-+-+. +...|
T Consensus 126 H~~-----~Vt~lsiHPS~KLALsVg-------------------------------------------------~D~~l 151 (362)
T KOG0294|consen 126 HKG-----QVTDLSIHPSGKLALSVG-------------------------------------------------GDQVL 151 (362)
T ss_pred ccc-----ccceeEecCCCceEEEEc-------------------------------------------------CCcee
Confidence 111 366778899998544431 11568
Q ss_pred EEEcc-CCCccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeE-EecCCCCCCCCCcc
Q 004456 160 VLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVC 236 (752)
Q Consensus 160 ~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~ 236 (752)
.+|+| .|....+... .....+.|+|.|.+.++...+ .|.+|.++...+- .+... ..
T Consensus 152 r~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~--------------~i~i~q~d~A~v~~~i~~~-~r------ 210 (362)
T KOG0294|consen 152 RTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN--------------KIDIYQLDNASVFREIENP-KR------ 210 (362)
T ss_pred eeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc--------------EEEEEecccHhHhhhhhcc-cc------
Confidence 88888 7743333222 344459999999988777544 4666666544321 11111 00
Q ss_pred cCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeee-e-ecCCceEE
Q 004456 237 YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVS-W-CDDSLALV 314 (752)
Q Consensus 237 ~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~-spDg~~l~ 314 (752)
+....|. ++.. |+... .+..+..+|.+ +......+.....++..+. + .|++.+|+
T Consensus 211 -------~l~~~~l-~~~~-L~vG~------------d~~~i~~~D~d--s~~~~~~~~AH~~RVK~i~~~~~~~~~~lv 267 (362)
T KOG0294|consen 211 -------ILCATFL-DGSE-LLVGG------------DNEWISLKDTD--SDTPLTEFLAHENRVKDIASYTNPEHEYLV 267 (362)
T ss_pred -------ceeeeec-CCce-EEEec------------CCceEEEeccC--CCccceeeecchhheeeeEEEecCCceEEE
Confidence 1112332 2222 22221 12356666663 1233344555666776665 3 46776666
Q ss_pred EeeecccCceeEEEEcCCCC
Q 004456 315 NETWYKTSQTRTWLVCPGSK 334 (752)
Q Consensus 315 ~~~~~~~~~~~l~~~~~~~~ 334 (752)
..+ .+ +...+|-+++++.
T Consensus 268 TaS-SD-G~I~vWd~~~~~k 285 (362)
T KOG0294|consen 268 TAS-SD-GFIKVWDIDMETK 285 (362)
T ss_pred Eec-cC-ceEEEEEcccccc
Confidence 554 22 4455666666653
No 413
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=96.36 E-value=0.014 Score=56.66 Aligned_cols=82 Identities=13% Similarity=0.106 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC----C-----CceeEEEEccCCCCCCCCccCccccccch
Q 004456 583 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA----P-----HLFCCGIARSGSYNKTLTPFGFQTEFRTL 653 (752)
Q Consensus 583 ~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~----p-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 653 (752)
...+.+.++.|.+.. ...+|.|++||||+.+.+.++... + ..|..+|+.+|-.+...
T Consensus 76 ~~~l~~~L~~L~~~~--~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~d~------------ 141 (233)
T PF05990_consen 76 GPALARFLRDLARAP--GIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDNDV------------ 141 (233)
T ss_pred HHHHHHHHHHHHhcc--CCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCHHH------------
Confidence 445555555665542 357999999999999999886542 1 25677777777544210
Q ss_pred hhhHHHHHhcChhhhcCCCCCCEEEEEeCCCCC
Q 004456 654 WEATNVYIEMSPITHANKIKKPILIIHGEVDDK 686 (752)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~ 686 (752)
.... ...+.+...++.+.+..+|..
T Consensus 142 ---f~~~-----~~~~~~~~~~itvy~s~~D~A 166 (233)
T PF05990_consen 142 ---FRSQ-----LPDLGSSARRITVYYSRNDRA 166 (233)
T ss_pred ---HHHH-----HHHHhhcCCCEEEEEcCCchH
Confidence 0000 012333457899999999965
No 414
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.35 E-value=0.0094 Score=57.96 Aligned_cols=74 Identities=14% Similarity=0.056 Sum_probs=47.0
Q ss_pred cEEEecCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC---CCceeEEEE
Q 004456 556 FAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA---PHLFCCGIA 632 (752)
Q Consensus 556 ~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~---p~~~~~~v~ 632 (752)
..|+. ....|++.........+++.+...++|..+.-+ ..+.|.|+|+||.+|+.+|.+- -+.++..++
T Consensus 27 ~~v~~---l~a~g~~~~~~~~~~l~~~a~~yv~~Ir~~QP~-----GPy~L~G~S~GG~vA~evA~qL~~~G~~Va~L~l 98 (257)
T COG3319 27 LPVYG---LQAPGYGAGEQPFASLDDMAAAYVAAIRRVQPE-----GPYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGL 98 (257)
T ss_pred ceeec---cccCcccccccccCCHHHHHHHHHHHHHHhCCC-----CCEEEEeeccccHHHHHHHHHHHhCCCeEEEEEE
Confidence 56666 445565543344445566666555555444332 4799999999999999998753 235666666
Q ss_pred ccCCC
Q 004456 633 RSGSY 637 (752)
Q Consensus 633 ~~~~~ 637 (752)
+....
T Consensus 99 lD~~~ 103 (257)
T COG3319 99 LDAVP 103 (257)
T ss_pred eccCC
Confidence 65543
No 415
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=96.33 E-value=0.0091 Score=49.43 Aligned_cols=60 Identities=27% Similarity=0.213 Sum_probs=47.7
Q ss_pred CCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHHH
Q 004456 673 KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 739 (752)
Q Consensus 673 ~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~ 739 (752)
..|+|++.++.|+.+| ++.++++.+.|... +++.+++.||+... ....=..+.+.+||..
T Consensus 34 ~~piL~l~~~~Dp~TP--~~~a~~~~~~l~~s----~lvt~~g~gHg~~~-~~s~C~~~~v~~yl~~ 93 (103)
T PF08386_consen 34 APPILVLGGTHDPVTP--YEGARAMAARLPGS----RLVTVDGAGHGVYA-GGSPCVDKAVDDYLLD 93 (103)
T ss_pred CCCEEEEecCcCCCCc--HHHHHHHHHHCCCc----eEEEEeccCcceec-CCChHHHHHHHHHHHc
Confidence 5899999999999999 99999998887653 79999999998663 2233455667788875
No 416
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=96.27 E-value=0.025 Score=61.02 Aligned_cols=149 Identities=11% Similarity=-0.012 Sum_probs=81.1
Q ss_pred EEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccC--CCC--chhHHHHHhCCcEEEe
Q 004456 485 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFS--GMT--PTSSLIFLARRFAVLA 560 (752)
Q Consensus 485 ~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~l~~~G~~v~~ 560 (752)
+.+....+..+..+++.... ++ ...|+||++.|||..+.-.......+|.... +.. ......+.+ -..+|.
T Consensus 16 l~~~~~~~~~lfyw~~~s~~-~~---~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~-~an~l~ 90 (415)
T PF00450_consen 16 LPVNDNENAHLFYWFFESRN-DP---EDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNK-FANLLF 90 (415)
T ss_dssp EEECTTTTEEEEEEEEE-SS-GG---CSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGG-TSEEEE
T ss_pred EecCCCCCcEEEEEEEEeCC-CC---CCccEEEEecCCceeccccccccccCceEEeeccccccccccccccc-ccceEE
Confidence 34443356678888886554 22 3479999999998653322222222222222 000 011112222 345555
Q ss_pred cCCCCCCCCCCCCCCch---hHHHHHHHHHHHH-HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh----C------CCc
Q 004456 561 GPSIPIIGEGDKLPNDR---FVEQLVSSAEAAV-EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH----A------PHL 626 (752)
Q Consensus 561 ~~~~~~~g~g~~~~~~~---~~~~~~~d~~~~~-~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~----~------p~~ 626 (752)
+|..-+.|++....... ......+|+.+++ .|+...+.....++.|.|.|+||..+..+|.. . +-.
T Consensus 91 iD~PvGtGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~in 170 (415)
T PF00450_consen 91 IDQPVGTGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKIN 170 (415)
T ss_dssp E--STTSTT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSE
T ss_pred EeecCceEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccc
Confidence 56555677655433332 2456677777777 44555555566699999999999988777643 2 235
Q ss_pred eeEEEEccCCCC
Q 004456 627 FCCGIARSGSYN 638 (752)
Q Consensus 627 ~~~~v~~~~~~~ 638 (752)
++++++..|+.+
T Consensus 171 LkGi~IGng~~d 182 (415)
T PF00450_consen 171 LKGIAIGNGWID 182 (415)
T ss_dssp EEEEEEESE-SB
T ss_pred cccceecCcccc
Confidence 899999998755
No 417
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=96.15 E-value=0.31 Score=51.91 Aligned_cols=60 Identities=17% Similarity=0.121 Sum_probs=41.4
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceec--cCCCCccccccccceEEecCCcEEEEEe
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL--FESPDICLNAVFGSFVWVNNSTLLIFTI 105 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~l--t~~~~~~~~~~~~~~~wspdg~~l~~~~ 105 (752)
-+....|-| |+-..... .++..+..++++++..... ..+.. ..+....++|+...++++.
T Consensus 102 AifDl~wap-ge~~lVsa---------sGDsT~r~Wdvk~s~l~G~~~~~GH~----~SvkS~cf~~~n~~vF~tG 163 (720)
T KOG0321|consen 102 AIFDLKWAP-GESLLVSA---------SGDSTIRPWDVKTSRLVGGRLNLGHT----GSVKSECFMPTNPAVFCTG 163 (720)
T ss_pred eeEeeccCC-CceeEEEc---------cCCceeeeeeeccceeecceeecccc----cccchhhhccCCCcceeec
Confidence 577889999 66554432 5667888889888775544 22222 1467889999999888763
No 418
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.15 E-value=0.88 Score=44.29 Aligned_cols=60 Identities=12% Similarity=0.138 Sum_probs=40.6
Q ss_pred cccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCCC
Q 004456 88 VFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT 167 (752)
Q Consensus 88 ~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G~ 167 (752)
.+..+.|+||.+.|+.+.. ...+|.-++.+|+
T Consensus 87 nvS~LTynp~~rtLFav~n------------------------------------------------~p~~iVElt~~Gd 118 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTN------------------------------------------------KPAAIVELTKEGD 118 (316)
T ss_pred cccceeeCCCcceEEEecC------------------------------------------------CCceEEEEecCCc
Confidence 4788999999999987632 1156777777774
Q ss_pred c-cccC--CccceeccccCCCCceEEEEecc
Q 004456 168 A-KDFG--TPAVYTAVEPSPDQKYVLITSMH 195 (752)
Q Consensus 168 ~-~~l~--~~~~~~~~~~SpDGk~l~~~~~~ 195 (752)
. ++++ -..+...+.|.-+|++++.-..+
T Consensus 119 lirtiPL~g~~DpE~Ieyig~n~fvi~dER~ 149 (316)
T COG3204 119 LIRTIPLTGFSDPETIEYIGGNQFVIVDERD 149 (316)
T ss_pred eEEEecccccCChhHeEEecCCEEEEEehhc
Confidence 3 3332 22566788888888877665433
No 419
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=95.96 E-value=0.1 Score=65.47 Aligned_cols=75 Identities=8% Similarity=0.000 Sum_probs=49.1
Q ss_pred hCCcEEEecCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh---CCCceeE
Q 004456 553 ARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH---APHLFCC 629 (752)
Q Consensus 553 ~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~---~p~~~~~ 629 (752)
..++.|+.+ ...|.+...........+..++.+.++.+. ...++.++||||||.++..++.+ .++++..
T Consensus 1092 ~~~~~v~~~---~~~g~~~~~~~~~~l~~la~~~~~~i~~~~-----~~~p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~ 1163 (1296)
T PRK10252 1092 DPQWSIYGI---QSPRPDGPMQTATSLDEVCEAHLATLLEQQ-----PHGPYHLLGYSLGGTLAQGIAARLRARGEEVAF 1163 (1296)
T ss_pred CCCCcEEEE---ECCCCCCCCCCCCCHHHHHHHHHHHHHhhC-----CCCCEEEEEechhhHHHHHHHHHHHHcCCceeE
Confidence 456888883 344554332333445566666555554331 12479999999999999999885 4677888
Q ss_pred EEEccC
Q 004456 630 GIARSG 635 (752)
Q Consensus 630 ~v~~~~ 635 (752)
.+++.+
T Consensus 1164 l~l~~~ 1169 (1296)
T PRK10252 1164 LGLLDT 1169 (1296)
T ss_pred EEEecC
Confidence 877665
No 420
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=95.95 E-value=0.23 Score=54.85 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=51.0
Q ss_pred cEEEEEccCC------CccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCC
Q 004456 157 AQLVLGSLDG------TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPP 229 (752)
Q Consensus 157 ~~i~~~~~~G------~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~ 229 (752)
++|.+|.--| ..+.+.-+ ..+..++||+||.+|+-...+ .-+.+|.++++..+-|.....
T Consensus 227 GrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E-------------~VLv~Wq~~T~~kqfLPRLgs 293 (792)
T KOG1963|consen 227 GRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGRE-------------GVLVLWQLETGKKQFLPRLGS 293 (792)
T ss_pred CcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccc-------------eEEEEEeecCCCcccccccCC
Confidence 4566665522 23333334 778899999999999765444 368889999888665555533
Q ss_pred CCCCCcccCCccccccceeeeeCCCc
Q 004456 230 AEDIPVCYNSVREGMRSISWRADKPS 255 (752)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~wspDG~~ 255 (752)
- +..++|||||..
T Consensus 294 ~-------------I~~i~vS~ds~~ 306 (792)
T KOG1963|consen 294 P-------------ILHIVVSPDSDL 306 (792)
T ss_pred e-------------eEEEEEcCCCCe
Confidence 2 778999999996
No 421
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=95.90 E-value=1.4 Score=40.60 Aligned_cols=22 Identities=14% Similarity=0.040 Sum_probs=19.6
Q ss_pred cceeccccCCCCceEEEEeccc
Q 004456 175 AVYTAVEPSPDQKYVLITSMHR 196 (752)
Q Consensus 175 ~~~~~~~~SpDGk~l~~~~~~~ 196 (752)
+.+.-.+|||+|+.|+-.++++
T Consensus 90 gsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 90 GSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred ccEEEEEecCccCeEEecCCCc
Confidence 7888999999999999887775
No 422
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=95.87 E-value=0.63 Score=44.78 Aligned_cols=173 Identities=13% Similarity=0.060 Sum_probs=101.4
Q ss_pred cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCC
Q 004456 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (752)
Q Consensus 175 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~ 254 (752)
..+.++.|-|=..-++.++ .|...+.+||.++-+......-+.. +..-+|||=..
T Consensus 102 y~iss~~WyP~DtGmFtss------------SFDhtlKVWDtnTlQ~a~~F~me~~-------------VYshamSp~a~ 156 (397)
T KOG4283|consen 102 YAISSAIWYPIDTGMFTSS------------SFDHTLKVWDTNTLQEAVDFKMEGK-------------VYSHAMSPMAM 156 (397)
T ss_pred eeeeeeEEeeecCceeecc------------cccceEEEeecccceeeEEeecCce-------------eehhhcChhhh
Confidence 4566777777655554432 3346899999998877666555544 44567887654
Q ss_pred ceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCC
Q 004456 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (752)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 334 (752)
..-+.+... ....+.+.|+. .|.-...|......+..+.|||-..+++++...+ +.-++|-+.-.++
T Consensus 157 sHcLiA~gt----------r~~~VrLCDi~--SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaD-g~irlWDiRrasg 223 (397)
T KOG4283|consen 157 SHCLIAAGT----------RDVQVRLCDIA--SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSAD-GAIRLWDIRRASG 223 (397)
T ss_pred cceEEEEec----------CCCcEEEEecc--CCcceeeeccccCceEEEEeccCceeEEEecCCC-ceEEEEEeecccc
Confidence 312222211 22266777773 3344456777778899999999999999987444 4455666555432
Q ss_pred Cccceecccccc------ccccC-CCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCce
Q 004456 335 DVAPRVLFDRVF------ENVYS-DPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSK 407 (752)
Q Consensus 335 ~~~~~~l~~~~~------~~~~~-~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~ 407 (752)
--+.+-.++. ..... ..-...++|+.||++++.... ..++.+|+...|+-
T Consensus 224 --cf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt---------------------d~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 224 --CFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT---------------------DDRIRVWNMESGRN 280 (397)
T ss_pred --eeEEeecccCccCccccccccccceeeeeeecccchhhhhccC---------------------ccceEEeecccCcc
Confidence 1112211110 00000 011334789999999877642 23577788777764
Q ss_pred e
Q 004456 408 E 408 (752)
Q Consensus 408 ~ 408 (752)
+
T Consensus 281 t 281 (397)
T KOG4283|consen 281 T 281 (397)
T ss_pred c
Confidence 3
No 423
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.86 E-value=0.63 Score=45.32 Aligned_cols=57 Identities=5% Similarity=0.066 Sum_probs=38.0
Q ss_pred eceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEE
Q 004456 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLI 102 (752)
Q Consensus 33 ~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~ 102 (752)
++..+|.||.+.|+.+. +....|+.++.+|.-.+++...... ....+++..++.+++
T Consensus 24 ~SGLTy~pd~~tLfaV~---------d~~~~i~els~~G~vlr~i~l~g~~----D~EgI~y~g~~~~vl 80 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQ---------DEPGEIYELSLDGKVLRRIPLDGFG----DYEGITYLGNGRYVL 80 (248)
T ss_dssp EEEEEEETTTTEEEEEE---------TTTTEEEEEETT--EEEEEE-SS-S----SEEEEEE-STTEEEE
T ss_pred ccccEEcCCCCeEEEEE---------CCCCEEEEEcCCCCEEEEEeCCCCC----CceeEEEECCCEEEE
Confidence 88999999999987765 3457899999876666666443322 356778887776554
No 424
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.84 E-value=0.68 Score=45.09 Aligned_cols=141 Identities=14% Similarity=0.158 Sum_probs=67.0
Q ss_pred cEEEEEccCCCc-ccc--CCccceeccccCCCCceEEEEecccCccccccccCccccEEEEecC--Cce--e---EEecC
Q 004456 157 AQLVLGSLDGTA-KDF--GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKL--V---RELCD 226 (752)
Q Consensus 157 ~~i~~~~~~G~~-~~l--~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~--~~~--~---~~l~~ 226 (752)
..|+.++++|+. +++ ...+++..+++.-+|++++.. .+. ..++.++++ ++. . +.+.-
T Consensus 44 ~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~-Er~------------~~L~~~~~~~~~~~~~~~~~~~~~l 110 (248)
T PF06977_consen 44 GEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSE-ERD------------QRLYIFTIDDDTTSLDRADVQKISL 110 (248)
T ss_dssp TEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEE-TTT------------TEEEEEEE----TT--EEEEEEEE-
T ss_pred CEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEE-cCC------------CcEEEEEEeccccccchhhceEEec
Confidence 678999998843 333 223788899998778665543 221 367766652 221 1 11111
Q ss_pred CCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEee--------cc
Q 004456 227 LPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--------LD 298 (752)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--------~~ 298 (752)
... .....+...++|+|.++. |+.+... ....||-++... .......... .-
T Consensus 111 ~~~--------~~~N~G~EGla~D~~~~~-L~v~kE~----------~P~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 111 GFP--------NKGNKGFEGLAYDPKTNR-LFVAKER----------KPKRLYEVNGFP-GGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp --S-----------SS--EEEEEETTTTE-EEEEEES----------SSEEEEEEESTT--SS--EEEE-HHHH-HT--S
T ss_pred ccc--------cCCCcceEEEEEcCCCCE-EEEEeCC----------CChhhEEEcccc-Cccceeecccccccccccee
Confidence 100 112344668999999988 6666321 223566665411 0111111111 11
Q ss_pred cceeeeeeecCCceEEEeeecccCceeEEEEcCCC
Q 004456 299 LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (752)
Q Consensus 299 ~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 333 (752)
.....+++.|....|+..+. ....|..+|.++
T Consensus 171 ~d~S~l~~~p~t~~lliLS~---es~~l~~~d~~G 202 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILSD---ESRLLLELDRQG 202 (248)
T ss_dssp S---EEEEETTTTEEEEEET---TTTEEEEE-TT-
T ss_pred ccccceEEcCCCCeEEEEEC---CCCeEEEECCCC
Confidence 23566778888777777652 223588888665
No 425
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=95.80 E-value=2 Score=41.55 Aligned_cols=146 Identities=7% Similarity=0.068 Sum_probs=78.4
Q ss_pred cceeccccCCCC-ceEEEEecccCccccccccCccccEEEEecCCce----eEEecCCCCCCCCCcccCCccccccceee
Q 004456 175 AVYTAVEPSPDQ-KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL----VRELCDLPPAEDIPVCYNSVREGMRSISW 249 (752)
Q Consensus 175 ~~~~~~~~SpDG-k~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~w 249 (752)
+...++.|..=. ++|...+.+. ...+||+.++. .++|-. ++..+.+++|
T Consensus 151 aPlTSFDWne~dp~~igtSSiDT-------------TCTiWdie~~~~~~vkTQLIA-------------HDKEV~DIaf 204 (364)
T KOG0290|consen 151 APLTSFDWNEVDPNLIGTSSIDT-------------TCTIWDIETGVSGTVKTQLIA-------------HDKEVYDIAF 204 (364)
T ss_pred CcccccccccCCcceeEeecccC-------------eEEEEEEeeccccceeeEEEe-------------cCcceeEEEe
Confidence 566788888654 4554444443 56788887652 233333 3344789999
Q ss_pred eeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEe-ecc---cceeeeeeecCC-ceEEEeeecccCce
Q 004456 250 RADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-KLD---LRFRSVSWCDDS-LALVNETWYKTSQT 324 (752)
Q Consensus 250 spDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~-~~~---~~~~~~~~spDg-~~l~~~~~~~~~~~ 324 (752)
+.+|.. +|++- ...+.+..+|+. .-+...+. +.. .....++|++.. ++++.-. . ...
T Consensus 205 ~~~s~~--~FASv----------gaDGSvRmFDLR---~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~-~--dS~ 266 (364)
T KOG0290|consen 205 LKGSRD--VFASV----------GADGSVRMFDLR---SLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFA-M--DSN 266 (364)
T ss_pred ccCccc--eEEEe----------cCCCcEEEEEec---ccccceEEecCCCCCCcceeeccCcCCchHHhhhh-c--CCc
Confidence 998876 33321 133456666763 22344433 222 234456777654 3333222 2 334
Q ss_pred eEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEee
Q 004456 325 RTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (752)
Q Consensus 325 ~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~ 371 (752)
++.++|+.-+......|..+. . ....++|.|-.+.-+++.
T Consensus 267 ~V~iLDiR~P~tpva~L~~H~-a------~VNgIaWaPhS~~hicta 306 (364)
T KOG0290|consen 267 KVVILDIRVPCTPVARLRNHQ-A------SVNGIAWAPHSSSHICTA 306 (364)
T ss_pred eEEEEEecCCCcceehhhcCc-c------cccceEecCCCCceeeec
Confidence 677777766521112222222 1 122378999998777776
No 426
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.80 E-value=0.26 Score=53.68 Aligned_cols=165 Identities=9% Similarity=0.094 Sum_probs=104.1
Q ss_pred cEEEEEccCC--Ccc---ccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCC
Q 004456 157 AQLVLGSLDG--TAK---DFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA 230 (752)
Q Consensus 157 ~~i~~~~~~G--~~~---~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 230 (752)
+.|-+||++. .-. -+.++ ..+..+.|++---.|+++.... +.+..||+..++-+.....
T Consensus 110 G~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQD------------g~vK~~DlR~~~S~~t~~~--- 174 (839)
T KOG0269|consen 110 GVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQD------------GTVKCWDLRSKKSKSTFRS--- 174 (839)
T ss_pred CcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCC------------ceEEEEeeecccccccccc---
Confidence 5677788833 222 23444 6788999999988888876654 4788999886654443322
Q ss_pred CCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCC
Q 004456 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDS 310 (752)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg 310 (752)
....+|++.|+|--.. .|++.. ..+.|..||+.- ...-..+++..++.+..+.|+|++
T Consensus 175 ---------nSESiRDV~fsp~~~~--~F~s~~----------dsG~lqlWDlRq-p~r~~~k~~AH~GpV~c~nwhPnr 232 (839)
T KOG0269|consen 175 ---------NSESIRDVKFSPGYGN--KFASIH----------DSGYLQLWDLRQ-PDRCEKKLTAHNGPVLCLNWHPNR 232 (839)
T ss_pred ---------cchhhhceeeccCCCc--eEEEec----------CCceEEEeeccC-chhHHHHhhcccCceEEEeecCCC
Confidence 2245899999996553 455433 445788888831 112344577888889999999999
Q ss_pred ceEEEeeecccCceeEEEEcCCCCCccce-ec-cccccccccCCCCCCceeeCCCCCeEEEee
Q 004456 311 LALVNETWYKTSQTRTWLVCPGSKDVAPR-VL-FDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (752)
Q Consensus 311 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~-~l-~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~ 371 (752)
.+|+.+. ....+.++++.++...++ .+ +-...+- +.|-|+-.+.+.+.
T Consensus 233 ~~lATGG----RDK~vkiWd~t~~~~~~~~tInTiapv~r---------VkWRP~~~~hLAtc 282 (839)
T KOG0269|consen 233 EWLATGG----RDKMVKIWDMTDSRAKPKHTINTIAPVGR---------VKWRPARSYHLATC 282 (839)
T ss_pred ceeeecC----CCccEEEEeccCCCccceeEEeecceeee---------eeeccCccchhhhh
Confidence 9888876 333477777776422111 11 1111111 56888887655444
No 427
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.79 E-value=0.049 Score=54.46 Aligned_cols=107 Identities=17% Similarity=0.151 Sum_probs=64.4
Q ss_pred ceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCc----EEEecCCC-CCCCCCCCCCCchhHHHHHHHHH
Q 004456 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF----AVLAGPSI-PIIGEGDKLPNDRFVEQLVSSAE 587 (752)
Q Consensus 513 ~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~----~v~~~~~~-~~~g~g~~~~~~~~~~~~~~d~~ 587 (752)
.-++||+||.. +.|....+..++.....|+ +++..+.. ...||. ...........++.
T Consensus 116 k~vlvFvHGfN--------------ntf~dav~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn---~DreS~~~Sr~aLe 178 (377)
T COG4782 116 KTVLVFVHGFN--------------NTFEDAVYRTAQIVHDSGNDGVPVVFSWPSRGSLLGYN---YDRESTNYSRPALE 178 (377)
T ss_pred CeEEEEEcccC--------------CchhHHHHHHHHHHhhcCCCcceEEEEcCCCCeeeecc---cchhhhhhhHHHHH
Confidence 57999999953 3344433445554444443 33332221 112221 01112233456777
Q ss_pred HHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh----C----CCceeEEEEccCCCC
Q 004456 588 AAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH----A----PHLFCCGIARSGSYN 638 (752)
Q Consensus 588 ~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~----~----p~~~~~~v~~~~~~~ 638 (752)
.++.+|.+... ..+|.|+.||||.++++.++.+ . +..++-+|+.+|-.|
T Consensus 179 ~~lr~La~~~~--~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD 235 (377)
T COG4782 179 RLLRYLATDKP--VKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDID 235 (377)
T ss_pred HHHHHHHhCCC--CceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCC
Confidence 88889988764 3689999999999999988654 1 235777888777554
No 428
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.78 E-value=1.9 Score=42.04 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=28.6
Q ss_pred cEEEEEcc-CCCc-cccCCccceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCcee
Q 004456 157 AQLVLGSL-DGTA-KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (752)
Q Consensus 157 ~~i~~~~~-~G~~-~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 221 (752)
..|+.+|. +|+. .+......+... ...++..|++.... +.++.+|..+++.
T Consensus 46 ~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~v~v~~~~-------------~~l~~~d~~tG~~ 98 (238)
T PF13360_consen 46 GNLYALDAKTGKVLWRFDLPGPISGA-PVVDGGRVYVGTSD-------------GSLYALDAKTGKV 98 (238)
T ss_dssp SEEEEEETTTSEEEEEEECSSCGGSG-EEEETTEEEEEETT-------------SEEEEEETTTSCE
T ss_pred CEEEEEECCCCCEEEEeeccccccce-eeecccccccccce-------------eeeEecccCCcce
Confidence 68999998 8843 233222222222 24456667666533 2688888666544
No 429
>PRK13614 lipoprotein LpqB; Provisional
Probab=95.76 E-value=0.86 Score=50.08 Aligned_cols=56 Identities=11% Similarity=0.092 Sum_probs=38.1
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEE
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (752)
.+..++.|+||+.+|++. .....||+... ++..+.+.... ....++|.++| ++...
T Consensus 344 ~~~s~avS~~g~~~A~~~---------~~~~~l~~~~~-g~~~~~~~~g~------~Lt~PS~d~~g-~vWtv 399 (573)
T PRK13614 344 GPASPAESPVSQTVAFLN---------GSRTTLYTVSP-GQPARALTSGS------TLTRPSFSPQD-WVWTA 399 (573)
T ss_pred cccceeecCCCceEEEec---------CCCcEEEEecC-CCcceeeecCC------CccCCcccCCC-CEEEe
Confidence 567899999999999962 22357888764 55666554333 24567898888 56543
No 430
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.68 E-value=3.6 Score=43.58 Aligned_cols=55 Identities=13% Similarity=0.047 Sum_probs=30.0
Q ss_pred eeEEEecCCCceeEEeeccchhhhhceeeeecCCcceecccCCCEEEEEEecCCCCcEEEEEECCCCCeeE
Q 004456 396 FLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 466 (752)
Q Consensus 396 ~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~~g~~~~ 466 (752)
.|+.+|..+|+. +|..+.- ......+....++.|+... ....|+.+|..+|+...
T Consensus 290 ~l~~~d~~tG~~--~W~~~~~----------~~~~~ssp~i~g~~l~~~~----~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 290 VVVALDRRSGSE--LWKNDEL----------KYRQLTAPAVVGGYLVVGD----FEGYLHWLSREDGSFVA 344 (377)
T ss_pred eEEEEECCCCcE--EEccccc----------cCCccccCEEECCEEEEEe----CCCEEEEEECCCCCEEE
Confidence 599999988864 3543210 0000011222455555542 23469999988887653
No 431
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.66 E-value=4.9 Score=45.11 Aligned_cols=218 Identities=11% Similarity=0.123 Sum_probs=115.0
Q ss_pred cEEEEEcc-CCC-ccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCC--
Q 004456 157 AQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE-- 231 (752)
Q Consensus 157 ~~i~~~~~-~G~-~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~-- 231 (752)
..|.+|+. +++ ..-+|.+ -.+.-.+|.|.-..|+-.+.+. .+.+||..|-..+........+
T Consensus 115 QTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQ-------------TVRVWDisGLRkk~~~pg~~e~~~ 181 (1202)
T KOG0292|consen 115 QTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQ-------------TVRVWDISGLRKKNKAPGSLEDQM 181 (1202)
T ss_pred CeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccc-------------eEEEEeecchhccCCCCCCchhhh
Confidence 46888888 664 4455655 5667888999888888877663 7999998765544443331110
Q ss_pred --------CCC-------cccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCC--CeEE
Q 004456 232 --------DIP-------VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK--PEIL 294 (752)
Q Consensus 232 --------~~~-------~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~l 294 (752)
..+ ..+.+++-|+.-.+|.|.=. |++.. .+. ..-++|.++. ++. ....
T Consensus 182 ~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp--liVSG-~DD--------RqVKlWrmne----tKaWEvDtc 246 (1202)
T KOG0292|consen 182 RGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP--LIVSG-ADD--------RQVKLWRMNE----TKAWEVDTC 246 (1202)
T ss_pred hccccchhhcCCcCeeeeeeecccccccceEEecCCcc--eEEec-CCc--------ceeeEEEecc----ccceeehhh
Confidence 011 12233444555566666433 22221 110 1114555543 121 1222
Q ss_pred eecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceecc---ccccccccCCCCCCceeeCCCCCeEEEee
Q 004456 295 HKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF---DRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (752)
Q Consensus 295 ~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~p~~~~s~dg~~l~~~~ 371 (752)
......+.++-|.|....|+..+++. .|.++|++..+ ....+ ...+.-...+|....|+-..|+-.++|-.
T Consensus 247 rgH~nnVssvlfhp~q~lIlSnsEDk----sirVwDm~kRt--~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkl 320 (1202)
T KOG0292|consen 247 RGHYNNVSSVLFHPHQDLILSNSEDK----SIRVWDMTKRT--SVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKL 320 (1202)
T ss_pred hcccCCcceEEecCccceeEecCCCc----cEEEEeccccc--ceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEE
Confidence 34455678888999877777665333 47777776632 12221 22222222244455566677877777776
Q ss_pred eecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEee
Q 004456 372 KKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 412 (752)
Q Consensus 372 ~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~ 412 (752)
.+. +....++.++--- ....+|+.+|+.+.+...+..
T Consensus 321 eRE---rpa~~v~~n~LfY-vkd~~i~~~d~~t~~d~~v~~ 357 (1202)
T KOG0292|consen 321 ERE---RPAYAVNGNGLFY-VKDRFIRSYDLRTQKDTAVAS 357 (1202)
T ss_pred ccc---CceEEEcCCEEEE-EccceEEeeeccccccceeEe
Confidence 531 1222222111100 113368899988765555543
No 432
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=95.65 E-value=0.016 Score=60.56 Aligned_cols=68 Identities=15% Similarity=0.048 Sum_probs=54.0
Q ss_pred CCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCcccc----HHHHHHHHHHHHHHHhcCCC
Q 004456 674 KPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAAREN----VMHVIWETDRWLQKYCLSNT 745 (752)
Q Consensus 674 ~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~----~~~~~~~~~~fl~~~l~~~~ 745 (752)
+|+.|+....|+. ...+..++.+|+..|.++.+.+.++..|+|..... -.+..+..+.=|...|+.+.
T Consensus 788 Pp~~i~ac~mDP~----LDD~vmfA~kLr~lG~~v~l~vle~lPHGFLnft~ls~E~~~~~~~CI~rl~~~L~~~~ 859 (880)
T KOG4388|consen 788 PPVHIVACAMDPM----LDDSVMFARKLRNLGQPVTLRVLEDLPHGFLNFTALSRETRQAAELCIERLRLVLTPPA 859 (880)
T ss_pred CCceEEEeccCcc----hhHHHHHHHHHHhcCCceeehhhhcCCccceeHHhhCHHHHHHHHHHHHHHHHHhCCCC
Confidence 6899999999987 56788899999999999999999999999875432 23455566777777776543
No 433
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=95.57 E-value=2.4 Score=41.01 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=30.5
Q ss_pred cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecC
Q 004456 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCD 226 (752)
Q Consensus 175 ~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 226 (752)
..-..++||||+..||+..... .|.++|+.|.+...+..
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G-------------~i~vfdl~g~~lf~I~p 82 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTG-------------TIRVFDLMGSELFVIPP 82 (282)
T ss_pred chheEEEECCCCcEEEEEcCCC-------------eEEEEecccceeEEcCc
Confidence 4455789999999999987663 79999999876665543
No 434
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=95.56 E-value=0.24 Score=52.22 Aligned_cols=106 Identities=14% Similarity=0.176 Sum_probs=75.2
Q ss_pred CceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCC
Q 004456 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (752)
Q Consensus 30 ~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~ 109 (752)
...++...|.-+|.|||.++- .++...++|.++.....+ . +.....+.+....|.|-...+++++.
T Consensus 521 ~k~i~~vtWHrkGDYlatV~~-------~~~~~~VliHQLSK~~sQ-~---PF~kskG~vq~v~FHPs~p~lfVaTq--- 586 (733)
T KOG0650|consen 521 PKSIRQVTWHRKGDYLATVMP-------DSGNKSVLIHQLSKRKSQ-S---PFRKSKGLVQRVKFHPSKPYLFVATQ--- 586 (733)
T ss_pred CCccceeeeecCCceEEEecc-------CCCcceEEEEeccccccc-C---chhhcCCceeEEEecCCCceEEEEec---
Confidence 345889999999999999754 255678889887654432 2 22222224567789998887777632
Q ss_pred CCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CC-CccccCCc-cceeccccCCCC
Q 004456 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQ 186 (752)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G-~~~~l~~~-~~~~~~~~SpDG 186 (752)
..|..+|+ .+ -++.+..+ ..++.++.+|.|
T Consensus 587 -----------------------------------------------~~vRiYdL~kqelvKkL~tg~kwiS~msihp~G 619 (733)
T KOG0650|consen 587 -----------------------------------------------RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNG 619 (733)
T ss_pred -----------------------------------------------cceEEEehhHHHHHHHHhcCCeeeeeeeecCCC
Confidence 46778888 55 34455555 889999999999
Q ss_pred ceEEEEeccc
Q 004456 187 KYVLITSMHR 196 (752)
Q Consensus 187 k~l~~~~~~~ 196 (752)
..|+..+.++
T Consensus 620 Dnli~gs~d~ 629 (733)
T KOG0650|consen 620 DNLILGSYDK 629 (733)
T ss_pred CeEEEecCCC
Confidence 9999988775
No 435
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.47 E-value=0.77 Score=49.68 Aligned_cols=61 Identities=13% Similarity=0.286 Sum_probs=35.2
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCc-ceeccCCCCccccccccceEEecCCcEEEEEe
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~ 105 (752)
.+....|.-+-++|.-. +..+-|.|+-+-.|+ ...+++.-. ...|.+++|..||+.|..+.
T Consensus 73 sV~vvTWNe~~QKLTtS----------Dt~GlIiVWmlykgsW~EEMiNnRn---KSvV~SmsWn~dG~kIcIvY 134 (1189)
T KOG2041|consen 73 SVMVVTWNENNQKLTTS----------DTSGLIIVWMLYKGSWCEEMINNRN---KSVVVSMSWNLDGTKICIVY 134 (1189)
T ss_pred eEEEEEecccccccccc----------CCCceEEEEeeecccHHHHHhhCcC---ccEEEEEEEcCCCcEEEEEE
Confidence 46667787777776442 222334444444444 233332211 11477999999999998774
No 436
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=5.9 Score=45.82 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=48.2
Q ss_pred eeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeeccccee-eeeeecCCceEEEeeecc-cCce
Q 004456 247 ISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFR-SVSWCDDSLALVNETWYK-TSQT 324 (752)
Q Consensus 247 ~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~spDg~~l~~~~~~~-~~~~ 324 (752)
+.++.|+...+++....+++ -.++..+... .++.+..++.+...+. -+.|+.+.+.++|.+... .+..
T Consensus 345 ~~~~~d~~~~~~~~~~~~~~--------~~hi~~~~~~--~~~~~~~lt~g~w~v~~i~~~~~~~~~i~f~~~~~~~~~~ 414 (755)
T KOG2100|consen 345 PVFSSDGSSYLKVDSVSDGG--------YNHIAYLKLS--NGSEPRMLTSGNWEVTSILGYDKDSNRIYFDAYEEDPSER 414 (755)
T ss_pred ceEeecCCceeEEEeeccCC--------EEEEEEEEcC--CCCccccccccceEEEEeccccCCCceEEEEecCCCCCce
Confidence 57888886634444332221 1233333331 2336667777777654 345778899999987543 5778
Q ss_pred eEEEEcCCCC
Q 004456 325 RTWLVCPGSK 334 (752)
Q Consensus 325 ~l~~~~~~~~ 334 (752)
+||.+++.+.
T Consensus 415 ~ly~i~~~~~ 424 (755)
T KOG2100|consen 415 HLYSISLGSG 424 (755)
T ss_pred EEEEEEcccc
Confidence 8999999875
No 437
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.38 E-value=0.38 Score=51.36 Aligned_cols=88 Identities=20% Similarity=0.380 Sum_probs=47.2
Q ss_pred CceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccC
Q 004456 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (752)
Q Consensus 186 Gk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~ 265 (752)
|+.|.+...+ .+.+||..+++..+-.+.+ .++.+.||+||+. +++++
T Consensus 117 G~LL~~~~~~--------------~i~~yDw~~~~~i~~i~v~--------------~vk~V~Ws~~g~~-val~t---- 163 (443)
T PF04053_consen 117 GNLLGVKSSD--------------FICFYDWETGKLIRRIDVS--------------AVKYVIWSDDGEL-VALVT---- 163 (443)
T ss_dssp SSSEEEEETT--------------EEEEE-TTT--EEEEESS---------------E-EEEEE-TTSSE-EEEE-----
T ss_pred CcEEEEECCC--------------CEEEEEhhHcceeeEEecC--------------CCcEEEEECCCCE-EEEEe----
Confidence 8888776433 4889999877554433222 1468999999998 77774
Q ss_pred CCCccccCccceEEeccCC-------CCCCC--CCeEEeecccceeeeeeecCCceEEEee
Q 004456 266 GDANVEVSPRDIIYTQPAE-------PAEGE--KPEILHKLDLRFRSVSWCDDSLALVNET 317 (752)
Q Consensus 266 ~~~~~~~~~~~~l~~~~~~-------~~~~~--~~~~l~~~~~~~~~~~~spDg~~l~~~~ 317 (752)
.+.+++++-. +.+|- ....+.+...++.+..|-.| .++|++
T Consensus 164 ---------~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT 213 (443)
T PF04053_consen 164 ---------KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT 213 (443)
T ss_dssp ---------S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-
T ss_pred ---------CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc
Confidence 2245555441 00111 23334444778889999877 788876
No 438
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=95.38 E-value=0.13 Score=55.28 Aligned_cols=72 Identities=15% Similarity=0.208 Sum_probs=47.6
Q ss_pred eeCCCCCeEEEeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeeccchhhhhceeeeecCCcceecccCC
Q 004456 359 TRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQ 438 (752)
Q Consensus 359 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~ 438 (752)
...|..++++..-++. .|.++|+++|+.++.+..... + .+.-..+...|-|
T Consensus 603 ~Vdp~~k~v~t~cQDr---------------------nirif~i~sgKq~k~FKgs~~---~-----eG~lIKv~lDPSg 653 (1080)
T KOG1408|consen 603 AVDPTSKLVVTVCQDR---------------------NIRIFDIESGKQVKSFKGSRD---H-----EGDLIKVILDPSG 653 (1080)
T ss_pred eeCCCcceEEEEeccc---------------------ceEEEeccccceeeeeccccc---C-----CCceEEEEECCCc
Confidence 3567777777776442 488999999999999886543 0 0111124567778
Q ss_pred CEEEEEEecCCCCcEEEEEECCCCC
Q 004456 439 LKILTSKESKTEITQYHILSWPLKK 463 (752)
Q Consensus 439 ~~l~~~~~~~~~~~~i~~~d~~~g~ 463 (752)
-+|+.++++.+ |..+|.-+|+
T Consensus 654 iY~atScsdkt----l~~~Df~sgE 674 (1080)
T KOG1408|consen 654 IYLATSCSDKT----LCFVDFVSGE 674 (1080)
T ss_pred cEEEEeecCCc----eEEEEeccch
Confidence 88877776554 6677766655
No 439
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=95.19 E-value=0.016 Score=55.75 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=18.5
Q ss_pred CCcEEEEEeChHHHHHHHHHHh
Q 004456 601 PSRIAVGGHSYGAFMTAHLLAH 622 (752)
Q Consensus 601 ~~~i~l~G~S~GG~~a~~~~~~ 622 (752)
..+|.++||||||.++-.++..
T Consensus 77 ~~~IsfIgHSLGGli~r~al~~ 98 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALGL 98 (217)
T ss_pred cccceEEEecccHHHHHHHHHH
Confidence 3589999999999999777653
No 440
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=95.16 E-value=0.077 Score=53.59 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=57.4
Q ss_pred cCCCCchhHHHHHhCCcEEEecCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH
Q 004456 540 FSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHL 619 (752)
Q Consensus 540 ~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~ 619 (752)
|..+-......|.++|+.|+-++.. - -++.....++...|+.+++++...+ ....++.|+|+|+|+-+--.+
T Consensus 272 Wr~lDk~v~~~l~~~gvpVvGvdsL---R---YfW~~rtPe~~a~Dl~r~i~~y~~~--w~~~~~~liGySfGADvlP~~ 343 (456)
T COG3946 272 WRDLDKEVAEALQKQGVPVVGVDSL---R---YFWSERTPEQIAADLSRLIRFYARR--WGAKRVLLIGYSFGADVLPFA 343 (456)
T ss_pred hhhhhHHHHHHHHHCCCceeeeehh---h---hhhccCCHHHHHHHHHHHHHHHHHh--hCcceEEEEeecccchhhHHH
Confidence 4444456788999999999985543 2 2344455678889999999888775 235789999999999887777
Q ss_pred HHhCCC
Q 004456 620 LAHAPH 625 (752)
Q Consensus 620 ~~~~p~ 625 (752)
-.+-|.
T Consensus 344 ~n~L~~ 349 (456)
T COG3946 344 YNRLPP 349 (456)
T ss_pred HHhCCH
Confidence 666554
No 441
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.09 E-value=4.8 Score=41.56 Aligned_cols=84 Identities=15% Similarity=0.062 Sum_probs=46.7
Q ss_pred ccceeeeeCCCceEEEEEeccCC--CCccccCccceEEeccCCCCCCC-------------CCeEEeecccceeeeeeec
Q 004456 244 MRSISWRADKPSTLYWVEAQDRG--DANVEVSPRDIIYTQPAEPAEGE-------------KPEILHKLDLRFRSVSWCD 308 (752)
Q Consensus 244 ~~~~~wspDG~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~-------------~~~~l~~~~~~~~~~~~sp 308 (752)
...+.|.|||+ ||+..-.... ..+.....++.|+.++. ++. .......+-.....++|.|
T Consensus 116 g~~l~fgpDG~--LYvs~G~~~~~~~~~~~~~~~G~ilri~~---dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~ 190 (331)
T PF07995_consen 116 GGGLAFGPDGK--LYVSVGDGGNDDNAQDPNSLRGKILRIDP---DGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDP 190 (331)
T ss_dssp EEEEEE-TTSE--EEEEEB-TTTGGGGCSTTSSTTEEEEEET---TSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEET
T ss_pred CccccCCCCCc--EEEEeCCCCCcccccccccccceEEEecc---cCcCCCCCccccCCCceEEEEEeCCCccccEEEEC
Confidence 34699999995 7766544333 12223445678888887 333 3344555666677889999
Q ss_pred CCceEEEeeecccCceeEEEEcCC
Q 004456 309 DSLALVNETWYKTSQTRTWLVCPG 332 (752)
Q Consensus 309 Dg~~l~~~~~~~~~~~~l~~~~~~ 332 (752)
....|+...+......+|.++...
T Consensus 191 ~tg~l~~~d~G~~~~dein~i~~G 214 (331)
T PF07995_consen 191 NTGRLWAADNGPDGWDEINRIEPG 214 (331)
T ss_dssp TTTEEEEEEE-SSSSEEEEEE-TT
T ss_pred CCCcEEEEccCCCCCcEEEEeccC
Confidence 933355444333344667777543
No 442
>PRK13615 lipoprotein LpqB; Provisional
Probab=95.06 E-value=2.3 Score=46.66 Aligned_cols=158 Identities=15% Similarity=0.069 Sum_probs=87.4
Q ss_pred eceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 004456 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (752)
Q Consensus 33 ~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~ 112 (752)
...++.|+||+.+|++. ....||+-... +..+.+.... ....++|.++| ++....... .
T Consensus 336 ~~s~avS~dg~~~A~v~----------~~~~l~vg~~~-~~~~~~~~~~------~Lt~PS~d~~g-~vWtv~~g~-~-- 394 (557)
T PRK13615 336 ADAATLSADGRQAAVRN----------ASGVWSVGDGD-RDAVLLDTRP------GLVAPSLDAQG-YVWSTPASD-P-- 394 (557)
T ss_pred cccceEcCCCceEEEEc----------CCceEEEecCC-CcceeeccCC------ccccCcCcCCC-CEEEEeCCC-c--
Confidence 37799999999999972 12467776533 4556554322 24577999998 565432110 0
Q ss_pred CCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCCCccccCCc----cceeccccCCCCce
Q 004456 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP----AVYTAVEPSPDQKY 188 (752)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G~~~~l~~~----~~~~~~~~SpDGk~ 188 (752)
..+.....+|+...+... +.+..+..|+||-+
T Consensus 395 --------------------------------------------~~l~~~~~~G~~~~v~v~~~~~~~I~~lrvSrDG~R 430 (557)
T PRK13615 395 --------------------------------------------RGLVAWGPDGVGHPVAVSWTATGRVVSLEVARDGAR 430 (557)
T ss_pred --------------------------------------------eEEEEecCCCceEEeeccccCCCeeEEEEeCCCccE
Confidence 122333334533333221 56889999999999
Q ss_pred EEEEecccCccccccccCccccEEE---EecCCceeEEe-cCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEecc
Q 004456 189 VLITSMHRPYSYKVPCARFSQKVQV---WTTDGKLVREL-CDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (752)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~l~~---~d~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~ 264 (752)
+++....... .++++ .. +++..+.| +... .+......+.++.|..+++ |+.+....
T Consensus 431 ~Avi~~~~g~----------~~V~va~V~R-~~~~P~~L~~~p~-------~l~~~l~~v~sl~W~~~~~--laVl~~~~ 490 (557)
T PRK13615 431 VLVQLETGAG----------PQLLVASIVR-DGGVPTSLTTTPL-------ELLASPGTPLDATWVDELD--VATLTLAP 490 (557)
T ss_pred EEEEEecCCC----------CEEEEEEEEe-CCCcceEeeeccE-------EcccCcCcceeeEEcCCCE--EEEEeccC
Confidence 9998653321 13333 22 34434455 3221 0101111366899999998 65554222
Q ss_pred CCCCccccCccceEEeccC
Q 004456 265 RGDANVEVSPRDIIYTQPA 283 (752)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~ 283 (752)
+ ....++++.+
T Consensus 491 ~--------~~~~v~~v~v 501 (557)
T PRK13615 491 D--------GERQVELHQV 501 (557)
T ss_pred C--------CCceEEEEEC
Confidence 1 1225677776
No 443
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=94.95 E-value=0.035 Score=57.23 Aligned_cols=125 Identities=23% Similarity=0.259 Sum_probs=75.6
Q ss_pred EEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEe-cCCC-CCCCC---
Q 004456 495 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA-GPSI-PIIGE--- 569 (752)
Q Consensus 495 ~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~-~~~~-~~~g~--- 569 (752)
+..-+|.|. .++.+ .-++|+++||||-++.....+ + -...|+..+-++++ .+|+ +-.|+
T Consensus 121 LYlNVW~P~-~~p~n---~tVlVWiyGGGF~sGt~SLdv------Y------dGk~la~~envIvVs~NYRvG~FGFL~l 184 (601)
T KOG4389|consen 121 LYLNVWAPA-ADPYN---LTVLVWIYGGGFYSGTPSLDV------Y------DGKFLAAVENVIVVSMNYRVGAFGFLYL 184 (601)
T ss_pred eEEEEeccC-CCCCC---ceEEEEEEcCccccCCcceee------e------ccceeeeeccEEEEEeeeeeccceEEec
Confidence 566677774 23333 459999999987655433211 1 13345665555554 4443 22222
Q ss_pred -CCCCCCchhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHh--CCCceeEEEEccCCCC
Q 004456 570 -GDKLPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAH--APHLFCCGIARSGSYN 638 (752)
Q Consensus 570 -g~~~~~~~~~~~~~~d~~~~~~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~~~~--~p~~~~~~v~~~~~~~ 638 (752)
|....+ +...+-|.+-|++|+++.- .-|+++|.|+|.|.|+.-+.+=+.. ....|+-+|+.+|..+
T Consensus 185 ~~~~eaP---GNmGl~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 185 PGHPEAP---GNMGLLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLN 256 (601)
T ss_pred CCCCCCC---CccchHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCCC
Confidence 222222 3444667778999998862 2589999999999998755432222 1247888888888654
No 444
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.95 E-value=0.98 Score=48.43 Aligned_cols=141 Identities=11% Similarity=0.068 Sum_probs=77.8
Q ss_pred cEEEEEcc--CC--CccccCCc-cceecccc-CCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCC--
Q 004456 157 AQLVLGSL--DG--TAKDFGTP-AVYTAVEP-SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLP-- 228 (752)
Q Consensus 157 ~~i~~~~~--~G--~~~~l~~~-~~~~~~~~-SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-- 228 (752)
..|.+|+. ++ -...+.++ ..+..++. -++...++-.. +..+|++||++++..+.+....
T Consensus 95 tTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgG-------------LD~~IflWDin~~~~~l~~s~n~~ 161 (735)
T KOG0308|consen 95 TTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGG-------------LDRKIFLWDINTGTATLVASFNNV 161 (735)
T ss_pred ceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecC-------------CCccEEEEEccCcchhhhhhcccc
Confidence 46777777 32 34455555 66666666 44444433332 3358999999977442221111
Q ss_pred -CCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeee
Q 004456 229 -PAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWC 307 (752)
Q Consensus 229 -~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~s 307 (752)
...... +...++.+++-.+.|. ++.. ......|.+||-. .....-.|......++.+..+
T Consensus 162 t~~sl~s----G~k~siYSLA~N~t~t--~ivs-----------Ggtek~lr~wDpr--t~~kimkLrGHTdNVr~ll~~ 222 (735)
T KOG0308|consen 162 TVNSLGS----GPKDSIYSLAMNQTGT--IIVS-----------GGTEKDLRLWDPR--TCKKIMKLRGHTDNVRVLLVN 222 (735)
T ss_pred ccccCCC----CCccceeeeecCCcce--EEEe-----------cCcccceEEeccc--cccceeeeeccccceEEEEEc
Confidence 110000 1112233444455553 2222 1133367777763 334455566667788899999
Q ss_pred cCCceEEEeeecccCceeEEEEcCCC
Q 004456 308 DDSLALVNETWYKTSQTRTWLVCPGS 333 (752)
Q Consensus 308 pDg~~l~~~~~~~~~~~~l~~~~~~~ 333 (752)
+||+.++.++ ....|.++++..
T Consensus 223 dDGt~~ls~s----SDgtIrlWdLgq 244 (735)
T KOG0308|consen 223 DDGTRLLSAS----SDGTIRLWDLGQ 244 (735)
T ss_pred CCCCeEeecC----CCceEEeeeccc
Confidence 9999999877 334577777743
No 445
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=94.93 E-value=0.13 Score=51.27 Aligned_cols=117 Identities=17% Similarity=0.177 Sum_probs=71.9
Q ss_pred CCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhC---------CcEEEec
Q 004456 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR---------RFAVLAG 561 (752)
Q Consensus 491 ~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------G~~v~~~ 561 (752)
.|.+++.....|++.+ .++..+| ++++||-|... ..|. .+...|... -|-|++
T Consensus 132 eGL~iHFlhvk~p~~k-~~k~v~P-lLl~HGwPGsv-----------~EFy----kfIPlLT~p~~hg~~~d~~FEVI~- 193 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQKK-KKKKVKP-LLLLHGWPGSV-----------REFY----KFIPLLTDPKRHGNESDYAFEVIA- 193 (469)
T ss_pred cceeEEEEEecCCccc-cCCcccc-eEEecCCCchH-----------HHHH----hhhhhhcCccccCCccceeEEEec-
Confidence 5889999999998653 2333455 55689965321 1121 223333332 277888
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEE
Q 004456 562 PSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCG 630 (752)
Q Consensus 562 ~~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~ 630 (752)
....|+|-+..+...+-..++-..-..+-+...++ ++..|-|.-+|..++..++...|+.+.+.
T Consensus 194 --PSlPGygwSd~~sk~GFn~~a~ArvmrkLMlRLg~---nkffiqGgDwGSiI~snlasLyPenV~Gl 257 (469)
T KOG2565|consen 194 --PSLPGYGWSDAPSKTGFNAAATARVMRKLMLRLGY---NKFFIQGGDWGSIIGSNLASLYPENVLGL 257 (469)
T ss_pred --cCCCCcccCcCCccCCccHHHHHHHHHHHHHHhCc---ceeEeecCchHHHHHHHHHhhcchhhhHh
Confidence 44567766655543333323222223344555554 79999999999999999999999986653
No 446
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.90 E-value=0.67 Score=47.12 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=60.0
Q ss_pred CCCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCccCCccccHHHHHHHHHHHHHHHhc
Q 004456 673 KKPILIIHGEVDDKVGLFPMQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 742 (752)
Q Consensus 673 ~~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~fl~~~l~ 742 (752)
..+.+.+.+..|.++| ..+.+++.+..+..|..+.-+-+.++.|.......+..+.+...+|+.....
T Consensus 225 ~~~~ly~~s~~d~v~~--~~~ie~f~~~~~~~g~~v~s~~~~ds~H~~h~r~~p~~y~~~~~~Fl~~~~~ 292 (350)
T KOG2521|consen 225 PWNQLYLYSDNDDVLP--ADEIEKFIALRREKGVNVKSVKFKDSEHVAHFRSFPKTYLKKCSEFLRSVIS 292 (350)
T ss_pred cccceeecCCcccccc--HHHHHHHHHHHHhcCceEEEeeccCccceeeeccCcHHHHHHHHHHHHhccc
Confidence 4678888899999998 9999999999999999999999999999877677788999999999998754
No 447
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=94.77 E-value=0.096 Score=47.23 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC----ceeEEEEccC
Q 004456 582 LVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH----LFCCGIARSG 635 (752)
Q Consensus 582 ~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~----~~~~~v~~~~ 635 (752)
....+...++....+ ....+|.++|||+||.+|..++..... ....++.+++
T Consensus 10 ~~~~i~~~~~~~~~~--~p~~~i~v~GHSlGg~lA~l~a~~~~~~~~~~~~~~~~fg~ 65 (153)
T cd00741 10 LANLVLPLLKSALAQ--YPDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGP 65 (153)
T ss_pred HHHHHHHHHHHHHHH--CCCCeEEEEEcCHHHHHHHHHHHHHHhccCCCceEEEEeCC
Confidence 334444444444332 234789999999999999998876543 3445555554
No 448
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=94.69 E-value=1.8 Score=47.77 Aligned_cols=165 Identities=18% Similarity=0.139 Sum_probs=95.5
Q ss_pred EEEEEccCC-CccccCCc--cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCC
Q 004456 158 QLVLGSLDG-TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (752)
Q Consensus 158 ~i~~~~~~G-~~~~l~~~--~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (752)
.|-+-.|+| +.+.+... .....++..--++.++++-... .+|.+-.+++++.+.|.....
T Consensus 1048 SI~rasL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~l------------D~IevA~LdG~~rkvLf~tdL----- 1110 (1289)
T KOG1214|consen 1048 SISRASLEGAEPETIVNSGLISPEGIAVDHIRRNMYWTDSVL------------DKIEVALLDGSERKVLFYTDL----- 1110 (1289)
T ss_pred ccccccccCCCCceeecccCCCccceeeeeccceeeeecccc------------chhheeecCCceeeEEEeecc-----
Confidence 455556655 55544433 3333444444467777765443 378888899998887755432
Q ss_pred cccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccc-eeeeeeecCCceE
Q 004456 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR-FRSVSWCDDSLAL 313 (752)
Q Consensus 235 ~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~spDg~~l 313 (752)
..+|.++..|=+.. |||+.- ...+-.|-..+. +|...+.|...+-. ...+.|-|..+.|
T Consensus 1111 -------VNPR~iv~D~~rgn-LYwtDW---------nRenPkIets~m---DG~NrRilin~DigLPNGLtfdpfs~~L 1170 (1289)
T KOG1214|consen 1111 -------VNPRAIVVDPIRGN-LYWTDW---------NRENPKIETSSM---DGENRRILINTDIGLPNGLTFDPFSKLL 1170 (1289)
T ss_pred -------cCcceEEeecccCc-eeeccc---------cccCCcceeecc---CCccceEEeecccCCCCCceeCccccee
Confidence 12678888888887 999852 223335666666 66666766644432 3456777888777
Q ss_pred EEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeee
Q 004456 314 VNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (752)
Q Consensus 314 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~ 373 (752)
.+.. .++.+|--+..++. +. +.+. .+...- |+...+++.++++.++
T Consensus 1171 CWvD---AGt~rleC~~p~g~-gR-R~i~-~~LqYP--------F~itsy~~~fY~TDWk 1216 (1289)
T KOG1214|consen 1171 CWVD---AGTKRLECTLPDGT-GR-RVIQ-NNLQYP--------FSITSYADHFYHTDWK 1216 (1289)
T ss_pred eEEe---cCCcceeEecCCCC-cc-hhhh-hcccCc--------eeeeeccccceeeccc
Confidence 7643 23445655555553 22 2222 222221 3346788888888643
No 449
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=94.66 E-value=4.8 Score=39.38 Aligned_cols=87 Identities=8% Similarity=-0.035 Sum_probs=51.4
Q ss_pred ceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcce
Q 004456 300 RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQI 379 (752)
Q Consensus 300 ~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~ 379 (752)
.+..++|+|-.+.++.+. ..+-+-+||+... .....+.... . ..-.+++|.||..||....-.
T Consensus 234 PVNai~Fhp~~~tfaTgG----sDG~V~~Wd~~~r-Krl~q~~~~~--~-----SI~slsfs~dG~~LAia~sy~----- 296 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGG----SDGIVNIWDLFNR-KRLKQLAKYE--T-----SISSLSFSMDGSLLAIASSYQ----- 296 (323)
T ss_pred EeceeEeccccceEEecC----CCceEEEccCcch-hhhhhccCCC--C-----ceEEEEeccCCCeEEEEechh-----
Confidence 456788999877777654 3445788888763 1112222221 1 122377999999999887321
Q ss_pred EEEEccCCCCCCCCCCeeEEEecCCCce
Q 004456 380 YILLNGRGFTPEGNIPFLDLFDINTGSK 407 (752)
Q Consensus 380 ~~~~~~~g~~~~~~~~~l~~~d~~~g~~ 407 (752)
-..+..+....+.|++.++.+-+.
T Consensus 297 ----ye~~~~~~~~~~~i~I~~l~d~e~ 320 (323)
T KOG1036|consen 297 ----YERADTPTHERNAIFIRDLTDYET 320 (323)
T ss_pred ----hhcCCCCCCCCCceEEEecccccc
Confidence 122223334566788888865443
No 450
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=94.63 E-value=0.041 Score=55.59 Aligned_cols=55 Identities=25% Similarity=0.317 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEcc
Q 004456 580 EQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARS 634 (752)
Q Consensus 580 ~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~ 634 (752)
++.+.|....+.+|++.......+|+++|.|+||++++++=.++|..+.++++.+
T Consensus 145 eQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaS 199 (492)
T KOG2183|consen 145 EQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAAS 199 (492)
T ss_pred HHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhcc
Confidence 4668999999999998866667899999999999999999999999877776654
No 451
>PLN02209 serine carboxypeptidase
Probab=94.61 E-value=0.33 Score=51.86 Aligned_cols=61 Identities=13% Similarity=0.063 Sum_probs=48.0
Q ss_pred CCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCC--------------------Cc-EEEEEeCCCCccCCccccHHHHHHH
Q 004456 674 KPILIIHGEVDDKVGLFPMQAERFFDALKGHG--------------------AL-SRLVLLPFEHHVYAARENVMHVIWE 732 (752)
Q Consensus 674 ~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~--------------------~~-~~~~~~~~~~H~~~~~~~~~~~~~~ 732 (752)
.++||..|..|.+|+ ...++++...|.-.+ .+ ..++.+-++||+.. ..++.++..
T Consensus 352 irVLiY~GD~D~icn--~~Gte~wi~~L~w~~~~~~~~w~~~~q~aG~vk~y~n~Ltfv~V~~AGHmVp--~qP~~al~m 427 (437)
T PLN02209 352 YRSLIFSGDHDITMP--FQATQAWIKSLNYSIIDDWRPWMIKGQIAGYTRTYSNKMTFATVKGGGHTAE--YLPEESSIM 427 (437)
T ss_pred ceEEEEECCccccCC--cHhHHHHHHhcCCccCCCeeeeEECCEeeeEEEEeCCceEEEEEcCCCCCcC--cCHHHHHHH
Confidence 689999999999998 888888888875211 12 56778889999873 478888888
Q ss_pred HHHHHH
Q 004456 733 TDRWLQ 738 (752)
Q Consensus 733 ~~~fl~ 738 (752)
+..|+.
T Consensus 428 ~~~fi~ 433 (437)
T PLN02209 428 FQRWIS 433 (437)
T ss_pred HHHHHc
Confidence 888885
No 452
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=94.54 E-value=6.1 Score=42.06 Aligned_cols=183 Identities=15% Similarity=0.128 Sum_probs=91.8
Q ss_pred cEEEEEccCC---CccccCCccceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCC
Q 004456 157 AQLVLGSLDG---TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (752)
Q Consensus 157 ~~i~~~~~~G---~~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 233 (752)
.+|.++|+.. +..+.++...+.-.-.|-|=..+++...+. .|.....-|. ...+ .+
T Consensus 74 P~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR-------------~IefHak~G~-hy~~-------RI 132 (703)
T KOG2321|consen 74 PQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDR-------------TIEFHAKYGR-HYRT-------RI 132 (703)
T ss_pred CceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCc-------------eeeehhhcCe-eeee-------ec
Confidence 5777778733 666666555555555666666666665553 1222111111 1111 01
Q ss_pred CcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceE
Q 004456 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLAL 313 (752)
Q Consensus 234 ~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l 313 (752)
| ..-+++..+--..- ||++. ....||.++++ .|.=...+....+.+..+..++-...|
T Consensus 133 P-------~~GRDm~y~~~scD-ly~~g------------sg~evYRlNLE--qGrfL~P~~~~~~~lN~v~in~~hgLl 190 (703)
T KOG2321|consen 133 P-------KFGRDMKYHKPSCD-LYLVG------------SGSEVYRLNLE--QGRFLNPFETDSGELNVVSINEEHGLL 190 (703)
T ss_pred C-------cCCccccccCCCcc-EEEee------------cCcceEEEEcc--ccccccccccccccceeeeecCccceE
Confidence 1 01233444332233 66664 23378999983 232233343344556667778888878
Q ss_pred EEeeecccCceeEEEEcCCCCCccceec------cccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCC
Q 004456 314 VNETWYKTSQTRTWLVCPGSKDVAPRVL------FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRG 387 (752)
Q Consensus 314 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l------~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g 387 (752)
+++. ..+.+-.+|+.+.. ....| ......+ ..+..-.+.|+.||-.+++.... |
T Consensus 191 a~Gt----~~g~VEfwDpR~ks-rv~~l~~~~~v~s~pg~~--~~~svTal~F~d~gL~~aVGts~-------------G 250 (703)
T KOG2321|consen 191 ACGT----EDGVVEFWDPRDKS-RVGTLDAASSVNSHPGGD--AAPSVTALKFRDDGLHVAVGTST-------------G 250 (703)
T ss_pred Eecc----cCceEEEecchhhh-hheeeecccccCCCcccc--ccCcceEEEecCCceeEEeeccC-------------C
Confidence 8766 23345566655421 11111 1111111 01112235678888888877632 2
Q ss_pred CCCCCCCCeeEEEecCCCceeEE
Q 004456 388 FTPEGNIPFLDLFDINTGSKERI 410 (752)
Q Consensus 388 ~~~~~~~~~l~~~d~~~g~~~~l 410 (752)
+++++|+.+.+.-.+
T Consensus 251 --------~v~iyDLRa~~pl~~ 265 (703)
T KOG2321|consen 251 --------SVLIYDLRASKPLLV 265 (703)
T ss_pred --------cEEEEEcccCCceee
Confidence 589999976655433
No 453
>PRK13613 lipoprotein LpqB; Provisional
Probab=94.53 E-value=2.4 Score=47.22 Aligned_cols=57 Identities=18% Similarity=0.095 Sum_probs=37.6
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcc-----eeccCCCCccccccccceEEecCCcEEEEE
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-----KPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~-----~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (752)
.+..++.|+||+.+|++. .....||+-++.++.. +.+.... ....++|.++| +|...
T Consensus 364 ~~~s~avS~~g~~~A~v~---------~~~~~l~vg~~~~~~~~~~~~~~~~~~~------~Lt~PS~d~~g-~vWtv 425 (599)
T PRK13613 364 PLRRVAVSRDESRAAGIS---------ADGDSVYVGSLTPGASIGVHSWGVTADG------RLTSPSWDGRG-DLWVV 425 (599)
T ss_pred CccceEEcCCCceEEEEc---------CCCcEEEEeccCCCCccccccceeeccC------cccCCcCcCCC-CEEEe
Confidence 577899999999999973 2346888877644432 2332222 24577999988 55543
No 454
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=94.38 E-value=6.1 Score=39.45 Aligned_cols=214 Identities=15% Similarity=0.086 Sum_probs=127.2
Q ss_pred ceeEEeecCCCCCCCCceeecCCCC-CceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCc
Q 004456 5 TGIGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (752)
Q Consensus 5 ~~i~~~~~~~~~~~g~~~~i~~~~~-~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~ 83 (752)
..|.++++.. |+.+.- ++. -..++..++|+---|+..+ ..+.++--+|++..+..+--.+.
T Consensus 173 rtikIwDlat----g~Lklt--ltGhi~~vr~vavS~rHpYlFs~----------gedk~VKCwDLe~nkvIR~YhGH-- 234 (460)
T KOG0285|consen 173 RTIKIWDLAT----GQLKLT--LTGHIETVRGVAVSKRHPYLFSA----------GEDKQVKCWDLEYNKVIRHYHGH-- 234 (460)
T ss_pred ceeEEEEccc----CeEEEe--ecchhheeeeeeecccCceEEEe----------cCCCeeEEEechhhhhHHHhccc--
Confidence 4677888877 764432 232 2258899999999888664 33467888888876654432221
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEc
Q 004456 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (752)
Q Consensus 84 ~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~ 163 (752)
+. .|..+...|.-..|+-.+. .+.+.+||
T Consensus 235 -lS-~V~~L~lhPTldvl~t~gr-------------------------------------------------Dst~RvWD 263 (460)
T KOG0285|consen 235 -LS-GVYCLDLHPTLDVLVTGGR-------------------------------------------------DSTIRVWD 263 (460)
T ss_pred -cc-eeEEEeccccceeEEecCC-------------------------------------------------cceEEEee
Confidence 12 3567777888776654321 14566666
Q ss_pred c-CC-CccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecC-CceeEEecCCCCCCCCCcccCC
Q 004456 164 L-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNS 239 (752)
Q Consensus 164 ~-~G-~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~~~ 239 (752)
. +. .+..+..+ ..+..+.+.|-.-+|+-.+.+ ..+.+||+. ++....++.....
T Consensus 264 iRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D-------------~tvrlWDl~agkt~~tlt~hkks--------- 321 (460)
T KOG0285|consen 264 IRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD-------------STVRLWDLRAGKTMITLTHHKKS--------- 321 (460)
T ss_pred ecccceEEEecCCCCcceeEEeecCCCceEEecCC-------------ceEEEeeeccCceeEeeecccce---------
Confidence 6 33 44555544 566667776666666666555 389999986 5566677766544
Q ss_pred ccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeec
Q 004456 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWY 319 (752)
Q Consensus 240 ~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~ 319 (752)
++.+...|.-.. |++. ..+.+-.+++. +|.-...+...+.-+..++...||-.+ .++
T Consensus 322 ----vral~lhP~e~~---fASa-----------s~dnik~w~~p--~g~f~~nlsgh~~iintl~~nsD~v~~-~G~-- 378 (460)
T KOG0285|consen 322 ----VRALCLHPKENL---FASA-----------SPDNIKQWKLP--EGEFLQNLSGHNAIINTLSVNSDGVLV-SGG-- 378 (460)
T ss_pred ----eeEEecCCchhh---hhcc-----------CCccceeccCC--ccchhhccccccceeeeeeeccCceEE-EcC--
Confidence 667777776543 3321 22344555551 233333445555556666666666322 222
Q ss_pred ccCceeEEEEcCCCC
Q 004456 320 KTSQTRTWLVCPGSK 334 (752)
Q Consensus 320 ~~~~~~l~~~~~~~~ 334 (752)
.+..|+.+|-.++
T Consensus 379 --dng~~~fwdwksg 391 (460)
T KOG0285|consen 379 --DNGSIMFWDWKSG 391 (460)
T ss_pred --CceEEEEEecCcC
Confidence 3456888888775
No 455
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.38 E-value=2.2 Score=41.85 Aligned_cols=92 Identities=12% Similarity=0.104 Sum_probs=63.8
Q ss_pred cceEEEEEcccCcc---eeccCCCCccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccc
Q 004456 61 KLRVWIADAETGEA---KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRM 137 (752)
Q Consensus 61 ~~~l~v~~~~~g~~---~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (752)
.++|-|+++..-+. .-+-.+.. .+..++.+-+|..|+-.+.
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~s-----~Iacv~Ln~~Gt~vATaSt------------------------------- 201 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHDS-----DIACVALNLQGTLVATAST------------------------------- 201 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcccC-----ceeEEEEcCCccEEEEecc-------------------------------
Confidence 37888888876554 22322221 3567788899998886643
Q ss_pred hhhccCChhhhhhhhhhcccEEEEEcc-CC----CccccCCccceeccccCCCCceEEEEecccCccccccccCccccEE
Q 004456 138 TDNLLKDEYDESLFDYYTTAQLVLGSL-DG----TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQ 212 (752)
Q Consensus 138 ~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G----~~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~ 212 (752)
++.-|.++|. +| +.++-++...+..++||||+.+|++.+... .+.
T Consensus 202 -----------------kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKg-------------TlH 251 (346)
T KOG2111|consen 202 -----------------KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKG-------------TLH 251 (346)
T ss_pred -----------------CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCC-------------eEE
Confidence 2256778888 77 344555558899999999999999987663 677
Q ss_pred EEecCC
Q 004456 213 VWTTDG 218 (752)
Q Consensus 213 ~~d~~~ 218 (752)
++.+..
T Consensus 252 iF~l~~ 257 (346)
T KOG2111|consen 252 IFSLRD 257 (346)
T ss_pred EEEeec
Confidence 776643
No 456
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.31 E-value=2.5 Score=41.47 Aligned_cols=97 Identities=10% Similarity=0.082 Sum_probs=61.5
Q ss_pred ccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCC
Q 004456 209 QKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG 288 (752)
Q Consensus 209 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 288 (752)
+++.+.++...... .|..+.++...+.-++.+-+|.. |+-.+ .....|.++|.. +|
T Consensus 159 GqvQi~dL~~~~~~----------~p~~I~AH~s~Iacv~Ln~~Gt~-vATaS-----------tkGTLIRIFdt~--~g 214 (346)
T KOG2111|consen 159 GQVQIVDLASTKPN----------APSIINAHDSDIACVALNLQGTL-VATAS-----------TKGTLIRIFDTE--DG 214 (346)
T ss_pred ceEEEEEhhhcCcC----------CceEEEcccCceeEEEEcCCccE-EEEec-----------cCcEEEEEEEcC--CC
Confidence 46777777654331 23333444455777899999985 44443 133478888884 44
Q ss_pred CCCeEEeecc--cceeeeeeecCCceEEEeeecccCceeEEEEcCCC
Q 004456 289 EKPEILHKLD--LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (752)
Q Consensus 289 ~~~~~l~~~~--~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 333 (752)
...+.+.++. ..+..++||||+.+|+.++ ..+.|.++.+..
T Consensus 215 ~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS----dKgTlHiF~l~~ 257 (346)
T KOG2111|consen 215 TLLQELRRGVDRADIYCIAFSPNSSWLAVSS----DKGTLHIFSLRD 257 (346)
T ss_pred cEeeeeecCCchheEEEEEeCCCccEEEEEc----CCCeEEEEEeec
Confidence 4455565443 4578899999999999988 333466666554
No 457
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=94.30 E-value=0.08 Score=50.76 Aligned_cols=49 Identities=20% Similarity=0.206 Sum_probs=34.9
Q ss_pred HHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC----CceeEEEEccCC
Q 004456 588 AAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP----HLFCCGIARSGS 636 (752)
Q Consensus 588 ~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p----~~~~~~v~~~~~ 636 (752)
.|++|+.+...-.+.+|.+.|||.||++|..+++..+ +++..++.+.++
T Consensus 70 ~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDgP 122 (224)
T PF11187_consen 70 SALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDGP 122 (224)
T ss_pred HHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeCC
Confidence 5556665542222346999999999999999998853 467778877653
No 458
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=94.27 E-value=3.1 Score=44.58 Aligned_cols=141 Identities=13% Similarity=0.038 Sum_probs=81.3
Q ss_pred cEEEEEccCC-CccccCCc---cceeccccCCC-CceEEEEecccCccccccccCccccEEEEecCCceeEEe--cCCCC
Q 004456 157 AQLVLGSLDG-TAKDFGTP---AVYTAVEPSPD-QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL--CDLPP 229 (752)
Q Consensus 157 ~~i~~~~~~G-~~~~l~~~---~~~~~~~~SpD-Gk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l--~~~~~ 229 (752)
..+.++..+| +...+... ...-.+.||-. ...|......-. ..+...-+..+|+....+.+++ +..+.
T Consensus 184 aNl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s-----~~g~~~~d~ciYE~~r~klqrvsvtsipL 258 (545)
T PF11768_consen 184 ANLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSIS-----VKGEPSADSCIYECSRNKLQRVSVTSIPL 258 (545)
T ss_pred ccEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecC-----CCCCceeEEEEEEeecCceeEEEEEEEec
Confidence 4677777755 55555432 44557777764 344433322110 0111122445566655544443 22222
Q ss_pred CCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecC
Q 004456 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDD 309 (752)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spD 309 (752)
. ..+...+++|+.++ ++..+ ..+.+.++|. . ......+...-....++|+||
T Consensus 259 ~-----------s~v~~ca~sp~E~k-LvlGC------------~DgSiiLyD~---~-~~~t~~~ka~~~P~~iaWHp~ 310 (545)
T PF11768_consen 259 P-----------SQVICCARSPSEDK-LVLGC------------EDGSIILYDT---T-RGVTLLAKAEFIPTLIAWHPD 310 (545)
T ss_pred C-----------CcceEEecCcccce-EEEEe------------cCCeEEEEEc---C-CCeeeeeeecccceEEEEcCC
Confidence 2 22567899999998 66655 3347788886 2 234445555556678899999
Q ss_pred CceEEEeeecccCceeEEEEcCCCC
Q 004456 310 SLALVNETWYKTSQTRTWLVCPGSK 334 (752)
Q Consensus 310 g~~l~~~~~~~~~~~~l~~~~~~~~ 334 (752)
|..++..+ ..+.|..+|++-+
T Consensus 311 gai~~V~s----~qGelQ~FD~ALs 331 (545)
T PF11768_consen 311 GAIFVVGS----EQGELQCFDMALS 331 (545)
T ss_pred CcEEEEEc----CCceEEEEEeecC
Confidence 99888876 4456888887654
No 459
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.20 E-value=3.6 Score=43.29 Aligned_cols=172 Identities=8% Similarity=-0.024 Sum_probs=81.4
Q ss_pred ccceeeeeCCCceEEEEEeccCCCCccc-cCccceEEeccCCCCCCCC--CeEEeecccceeeeeeecCCceEEEeeecc
Q 004456 244 MRSISWRADKPSTLYWVEAQDRGDANVE-VSPRDIIYTQPAEPAEGEK--PEILHKLDLRFRSVSWCDDSLALVNETWYK 320 (752)
Q Consensus 244 ~~~~~wspDG~~~l~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~--~~~l~~~~~~~~~~~~spDg~~l~~~~~~~ 320 (752)
+..++|.++|+ |++++..+....... ....++|++++-.+.+|.. .+.+.+.-.....+++.++| |+++.
T Consensus 16 P~~ia~d~~G~--l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~--- 88 (367)
T TIGR02604 16 PIAVCFDERGR--LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT--- 88 (367)
T ss_pred CceeeECCCCC--EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC---
Confidence 56899999999 777654322211111 1123467776542222221 12333333445678888988 44432
Q ss_pred cCceeEEEE-cCCCCC---ccceeccc-cccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEccCCC---CCCC
Q 004456 321 TSQTRTWLV-CPGSKD---VAPRVLFD-RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGF---TPEG 392 (752)
Q Consensus 321 ~~~~~l~~~-~~~~~~---~~~~~l~~-~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~---~~~~ 392 (752)
...|+++ +.++.. ++.+.+.+ ..............++|.|||+ |+++..... + ... ...+. ....
T Consensus 89 --~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~-~--~~~-~~~~~~~~~~~~ 161 (367)
T TIGR02604 89 --PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTL-A--SKV-TRPGTSDESRQG 161 (367)
T ss_pred --CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCC-C--cee-ccCCCccCcccc
Confidence 2247766 443320 12233332 1111010111222467999995 666542210 0 000 11110 0111
Q ss_pred CCCeeEEEecCCCceeEEeeccchhhhhceeeeecCCcceecccCCCEE
Q 004456 393 NIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKI 441 (752)
Q Consensus 393 ~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 441 (752)
....|+++|+.+++.+.+...- + ... -++|+++|+.+
T Consensus 162 ~~g~i~r~~pdg~~~e~~a~G~-r----np~-------Gl~~d~~G~l~ 198 (367)
T TIGR02604 162 LGGGLFRYNPDGGKLRVVAHGF-Q----NPY-------GHSVDSWGDVF 198 (367)
T ss_pred cCceEEEEecCCCeEEEEecCc-C----CCc-------cceECCCCCEE
Confidence 2346999999888776553321 1 112 24788887653
No 460
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.17 E-value=2.3 Score=46.36 Aligned_cols=60 Identities=12% Similarity=0.095 Sum_probs=43.3
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEE
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (752)
++..-.++-.+++|++.+. .+-||+++..+|+-+.+++..... .......|++...+++.
T Consensus 35 ~v~lTc~dst~~~l~~GsS----------~G~lyl~~R~~~~~~~~~~~~~~~---~~~~~~vs~~e~lvAag 94 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSS----------AGSVYLYNRHTGEMRKLKNEGATG---ITCVRSVSSVEYLVAAG 94 (726)
T ss_pred eEEEEEeecCCceEEEecc----------cceEEEEecCchhhhcccccCccc---eEEEEEecchhHhhhhh
Confidence 4666678888999999643 478999998899888887644321 23355778888877765
No 461
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=94.13 E-value=7.9 Score=40.92 Aligned_cols=196 Identities=16% Similarity=0.172 Sum_probs=105.2
Q ss_pred eceeEe-cCCCCeEEEeeccccccccccCcceEEEEEccc--CcceeccCCCCccccccccceEEecCCcEEEEEecCCC
Q 004456 33 INFVSW-SPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET--GEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (752)
Q Consensus 33 ~~~~~~-SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~--g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~ 109 (752)
+....+ ++++..++.... .....+.+++..+ .....+..+.. .+..+.|+|+++.++....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~--------~~d~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~--- 175 (466)
T COG2319 112 VSKLALSSPDGNSILLASS--------SLDGTVKLWDLSTPGKLIRTLEGHSE-----SVTSLAFSPDGKLLASGSS--- 175 (466)
T ss_pred eeeEEEECCCcceEEeccC--------CCCccEEEEEecCCCeEEEEEecCcc-----cEEEEEECCCCCEEEecCC---
Confidence 445555 889984444321 2235777777776 33444433333 3557899999995554311
Q ss_pred CCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc-CC-CccccCCc-cceeccccCCCC
Q 004456 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQ 186 (752)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~-~G-~~~~l~~~-~~~~~~~~SpDG 186 (752)
. ...+..+++ .+ ....+..+ ..+..+.|+|+|
T Consensus 176 ~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 210 (466)
T COG2319 176 L---------------------------------------------DGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG 210 (466)
T ss_pred C---------------------------------------------CCceEEEEcCCCceEEeeccCCCceEEEEEcCCc
Confidence 0 146777777 34 33333333 778899999999
Q ss_pred ceEEEEecccCccccccccCccccEEEEecCCceeEEe-cCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccC
Q 004456 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL-CDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (752)
Q Consensus 187 k~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~ 265 (752)
+.++...... ..+.+|+...+..... ...... .. ...|+|++.. ++ ...
T Consensus 211 ~~~~~~~~~d------------~~i~~wd~~~~~~~~~~~~~~~~------------~~-~~~~~~~~~~-~~-~~~--- 260 (466)
T COG2319 211 GLLIASGSSD------------GTIRLWDLSTGKLLRSTLSGHSD------------SV-VSSFSPDGSL-LA-SGS--- 260 (466)
T ss_pred ceEEEEecCC------------CcEEEEECCCCcEEeeecCCCCc------------ce-eEeECCCCCE-EE-Eec---
Confidence 9444441221 3566776664433321 111111 01 1179999954 33 221
Q ss_pred CCCccccCccceEEeccCCCCCCCCC--eEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCC
Q 004456 266 GDANVEVSPRDIIYTQPAEPAEGEKP--EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (752)
Q Consensus 266 ~~~~~~~~~~~~l~~~~~~~~~~~~~--~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 334 (752)
....+.+++.. .... ..+......+....|+|++..++... .+ ....+| +..+.
T Consensus 261 --------~d~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d-~~~~~~--~~~~~ 316 (466)
T COG2319 261 --------SDGTIRLWDLR---SSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS-SD-GTVRLW--DLETG 316 (466)
T ss_pred --------CCCcEEEeeec---CCCcEEEEEecCCccEEEEEECCCCCEEEEee-CC-CcEEEE--EcCCC
Confidence 33356677662 2221 22212245667778999888888744 33 334455 65553
No 462
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.11 E-value=5.6 Score=40.90 Aligned_cols=139 Identities=14% Similarity=0.133 Sum_probs=83.2
Q ss_pred cEEEEEcc-CCCccccCC-c-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCc-eeEEecCCCCCCC
Q 004456 157 AQLVLGSL-DGTAKDFGT-P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAED 232 (752)
Q Consensus 157 ~~i~~~~~-~G~~~~l~~-~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~ 232 (752)
..|.+||+ .|++.+... + ..++.+.|.|---.++.+.... ..+.+.|.... +.-.-..
T Consensus 266 ~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D------------~~V~l~D~R~~~~s~~~wk------ 327 (463)
T KOG0270|consen 266 KTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYD------------GTVALKDCRDPSNSGKEWK------ 327 (463)
T ss_pred ceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEecccc------------ceEEeeeccCccccCceEE------
Confidence 57999999 886655544 4 8899999999876666654332 35555555410 0000000
Q ss_pred CCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCce
Q 004456 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLA 312 (752)
Q Consensus 233 ~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~ 312 (752)
....+..++|.|.... .+++.. ..+.++.+|++. .+.....+-..+..+..+.+++.-..
T Consensus 328 -------~~g~VEkv~w~~~se~-~f~~~t-----------ddG~v~~~D~R~-~~~~vwt~~AHd~~ISgl~~n~~~p~ 387 (463)
T KOG0270|consen 328 -------FDGEVEKVAWDPHSEN-SFFVST-----------DDGTVYYFDIRN-PGKPVWTLKAHDDEISGLSVNIQTPG 387 (463)
T ss_pred -------eccceEEEEecCCCce-eEEEec-----------CCceEEeeecCC-CCCceeEEEeccCCcceEEecCCCCc
Confidence 0112446788888875 444432 445788888852 23344556667788888988887776
Q ss_pred EEEeeecccCceeEEEEcCCCC
Q 004456 313 LVNETWYKTSQTRTWLVCPGSK 334 (752)
Q Consensus 313 l~~~~~~~~~~~~l~~~~~~~~ 334 (752)
++.+...+ ..-.||.++...+
T Consensus 388 ~l~t~s~d-~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 388 LLSTASTD-KVVKLWKFDVDSP 408 (463)
T ss_pred ceeecccc-ceEEEEeecCCCC
Confidence 66654222 3345666665543
No 463
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.03 E-value=0.13 Score=55.51 Aligned_cols=132 Identities=11% Similarity=0.091 Sum_probs=75.8
Q ss_pred cEEEEEcc-CC-CccccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCC
Q 004456 157 AQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (752)
Q Consensus 157 ~~i~~~~~-~G-~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 233 (752)
+.|.+||+ .+ .++.|+.+ ..+..+.|+|=|++.+-.+.+. ++.+||..-+.....
T Consensus 92 gtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdt-------------d~~iwD~Rk~Gc~~~--------- 149 (825)
T KOG0267|consen 92 GTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDT-------------DLKIWDIRKKGCSHT--------- 149 (825)
T ss_pred CceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccc-------------cceehhhhccCceee---------
Confidence 58999999 66 67888888 7888888999999885544443 677777653322211
Q ss_pred CcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCC-eEEeecccceeeeeeecCCce
Q 004456 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLA 312 (752)
Q Consensus 234 ~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~spDg~~ 312 (752)
+.+...+++-+.|+|||++ ++--. ....+-++|+ ..++. .......+.+..+.+.|-.-.
T Consensus 150 ---~~s~~~vv~~l~lsP~Gr~-v~~g~------------ed~tvki~d~---~agk~~~ef~~~e~~v~sle~hp~e~L 210 (825)
T KOG0267|consen 150 ---YKSHTRVVDVLRLSPDGRW-VASGG------------EDNTVKIWDL---TAGKLSKEFKSHEGKVQSLEFHPLEVL 210 (825)
T ss_pred ---ecCCcceeEEEeecCCCce-eeccC------------Ccceeeeecc---cccccccccccccccccccccCchhhh
Confidence 1222233567899999996 22221 2236677776 22222 222233455555555554332
Q ss_pred EEEeeecccCceeEEEEcCCC
Q 004456 313 LVNETWYKTSQTRTWLVCPGS 333 (752)
Q Consensus 313 l~~~~~~~~~~~~l~~~~~~~ 333 (752)
+.-++ ....+-.+++.+
T Consensus 211 la~Gs----~d~tv~f~dlet 227 (825)
T KOG0267|consen 211 LAPGS----SDRTVRFWDLET 227 (825)
T ss_pred hccCC----CCceeeeeccce
Confidence 22222 333466666654
No 464
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=93.95 E-value=2.9 Score=44.64 Aligned_cols=57 Identities=23% Similarity=0.306 Sum_probs=32.9
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCcc---ccccccceEEecCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC---LNAVFGSFVWVNNS 98 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~---~~~~~~~~~wspdg 98 (752)
..+..+|.|||+.++- .+ ....|++++..++..+.+...+... -..+...++++||=
T Consensus 31 ~Pw~maflPDG~llVt-ER---------~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDNQLWVT-ER---------ATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCCeEEEE-Ee---------cCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 4677899999964433 11 1378898886666554443222110 01234577888873
No 465
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.92 E-value=5.1 Score=39.22 Aligned_cols=59 Identities=7% Similarity=0.085 Sum_probs=40.2
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEE
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~ 103 (752)
.++...|+||-+.|.-+. +...+|.-++.+|.-.+.++-.... ....+.|..+|++++.
T Consensus 87 nvS~LTynp~~rtLFav~---------n~p~~iVElt~~GdlirtiPL~g~~----DpE~Ieyig~n~fvi~ 145 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVT---------NKPAAIVELTKEGDLIRTIPLTGFS----DPETIEYIGGNQFVIV 145 (316)
T ss_pred cccceeeCCCcceEEEec---------CCCceEEEEecCCceEEEecccccC----ChhHeEEecCCEEEEE
Confidence 488999999999986654 3446777777777666666422211 2456789888886653
No 466
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.88 E-value=0.86 Score=47.95 Aligned_cols=65 Identities=12% Similarity=0.098 Sum_probs=40.8
Q ss_pred ccceeeeeCCCceEEEEEeccCCCC--------ccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceE
Q 004456 244 MRSISWRADKPSTLYWVEAQDRGDA--------NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLAL 313 (752)
Q Consensus 244 ~~~~~wspDG~~~l~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l 313 (752)
...+.|.|||+ ||+.....+... .......+.++.++. +++..+.+..+-.....++|+|+|+.+
T Consensus 126 ~~~l~~gpDG~--LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p---dg~~~e~~a~G~rnp~Gl~~d~~G~l~ 198 (367)
T TIGR02604 126 LNSLAWGPDGW--LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP---DGGKLRVVAHGFQNPYGHSVDSWGDVF 198 (367)
T ss_pred ccCceECCCCC--EEEecccCCCceeccCCCccCcccccCceEEEEec---CCCeEEEEecCcCCCccceECCCCCEE
Confidence 55799999997 777654221100 111223457888887 566666666555555678999998754
No 467
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=93.81 E-value=0.43 Score=50.93 Aligned_cols=62 Identities=15% Similarity=0.148 Sum_probs=48.4
Q ss_pred CCEEEEEeCCCCCCCCCHHHHHHHHHHHHhCC--------------------C-cEEEEEeCCCCccCCccccHHHHHHH
Q 004456 674 KPILIIHGEVDDKVGLFPMQAERFFDALKGHG--------------------A-LSRLVLLPFEHHVYAARENVMHVIWE 732 (752)
Q Consensus 674 ~P~li~~G~~D~~v~~~~~~~~~~~~~l~~~~--------------------~-~~~~~~~~~~~H~~~~~~~~~~~~~~ 732 (752)
.++||..|..|.+|| ....+++.++|.-.+ . ...++.+-++||+.. ..++..+..
T Consensus 348 irVLiY~Gd~D~icn--~~Gt~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~n~ltfv~V~~AGHmVp--~qP~~al~m 423 (433)
T PLN03016 348 YRSLIYSGDHDIAVP--FLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE--YRPNETFIM 423 (433)
T ss_pred ceEEEEECCccccCC--cHhHHHHHHhCCCCCCCCcccccCCCEeeeEEEEeCCceEEEEEcCCCCCCC--CCHHHHHHH
Confidence 689999999999998 888888888875211 1 256778889999873 468888888
Q ss_pred HHHHHHH
Q 004456 733 TDRWLQK 739 (752)
Q Consensus 733 ~~~fl~~ 739 (752)
+..|+..
T Consensus 424 ~~~Fi~~ 430 (433)
T PLN03016 424 FQRWISG 430 (433)
T ss_pred HHHHHcC
Confidence 8888853
No 468
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=93.74 E-value=0.16 Score=52.38 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=31.4
Q ss_pred CCcEEEEEeChHHHHHHHHHHhCC--CceeEEEEccCC
Q 004456 601 PSRIAVGGHSYGAFMTAHLLAHAP--HLFCCGIARSGS 636 (752)
Q Consensus 601 ~~~i~l~G~S~GG~~a~~~~~~~p--~~~~~~v~~~~~ 636 (752)
..++.++||||||.++..++...+ .+++..+.+++.
T Consensus 126 a~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp 163 (336)
T COG1075 126 AKKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTP 163 (336)
T ss_pred CCceEEEeecccchhhHHHHhhcCccceEEEEEEeccC
Confidence 378999999999999999998887 688888888765
No 469
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=93.73 E-value=0.17 Score=44.82 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 004456 583 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 622 (752)
Q Consensus 583 ~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~ 622 (752)
...+.+.++.+.++.. ..+|.+.|||+||.+|..++..
T Consensus 47 ~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~ 84 (140)
T PF01764_consen 47 YDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAAD 84 (140)
T ss_dssp HHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHh
Confidence 3445555555555443 3789999999999999988765
No 470
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.72 E-value=9.6 Score=39.30 Aligned_cols=149 Identities=14% Similarity=0.116 Sum_probs=78.1
Q ss_pred ceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCC--cccCCccccccceeeeeCC
Q 004456 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP--VCYNSVREGMRSISWRADK 253 (752)
Q Consensus 176 ~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~wspDG 253 (752)
+..++++.+||..++...... .......|+.++.++...+.+..+....... ..-.....+...++++|||
T Consensus 86 D~Egi~~~~~g~~~is~E~~~-------~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG 158 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGR-------TGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG 158 (326)
T ss_pred ChhHeEEecCCCEEEEeCCcc-------CCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCC
Confidence 555777767776554443321 1112357899998866555552221110000 0111233456789999999
Q ss_pred CceEEEEEeccCC----CCccccCccceEEeccCCCCCCCCCeEE-e--e------cccceeeeeeecCCceEEEeeec-
Q 004456 254 PSTLYWVEAQDRG----DANVEVSPRDIIYTQPAEPAEGEKPEIL-H--K------LDLRFRSVSWCDDSLALVNETWY- 319 (752)
Q Consensus 254 ~~~l~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~l-~--~------~~~~~~~~~~spDg~~l~~~~~~- 319 (752)
+. |+.+....-. .........-+|+.++... .+...... . . ....+..+.+-+|++.|+.....
T Consensus 159 ~~-l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~-~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~ 236 (326)
T PF13449_consen 159 RT-LFAAMESPLKQDGPRANPDNGSPLRILRYDPKT-PGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFS 236 (326)
T ss_pred CE-EEEEECccccCCCcccccccCceEEEEEecCCC-CCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCC
Confidence 97 5555443211 1101111224677777621 01112221 1 1 34567888899999966665421
Q ss_pred --ccCceeEEEEcCCC
Q 004456 320 --KTSQTRTWLVCPGS 333 (752)
Q Consensus 320 --~~~~~~l~~~~~~~ 333 (752)
.....+||.+++..
T Consensus 237 ~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 237 PGTGNYKRIYRVDLSD 252 (326)
T ss_pred CCccceEEEEEEEccc
Confidence 23557899999875
No 471
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.69 E-value=1.7 Score=46.63 Aligned_cols=130 Identities=10% Similarity=0.103 Sum_probs=79.4
Q ss_pred cEEEEEcc-CCCcc------cc-----C-Cc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCcee-
Q 004456 157 AQLVLGSL-DGTAK------DF-----G-TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV- 221 (752)
Q Consensus 157 ~~i~~~~~-~G~~~------~l-----~-~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~- 221 (752)
.+|++||+ .|..+ .+ . .+ ..+++++-.+.| .+++.... ...|.+||..++..
T Consensus 140 ~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgt------------ek~lr~wDprt~~ki 206 (735)
T KOG0308|consen 140 RKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGT------------EKDLRLWDPRTCKKI 206 (735)
T ss_pred ccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCc------------ccceEEeccccccce
Confidence 58999998 55221 11 1 11 456677777777 33333222 25899999887632
Q ss_pred EEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEe---ecc
Q 004456 222 RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH---KLD 298 (752)
Q Consensus 222 ~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~---~~~ 298 (752)
..|-.. ...++.+..++||+. ++-.+ ..+.|-+||+ +..+.+. -..
T Consensus 207 mkLrGH-------------TdNVr~ll~~dDGt~-~ls~s------------SDgtIrlWdL-----gqQrCl~T~~vH~ 255 (735)
T KOG0308|consen 207 MKLRGH-------------TDNVRVLLVNDDGTR-LLSAS------------SDGTIRLWDL-----GQQRCLATYIVHK 255 (735)
T ss_pred eeeecc-------------ccceEEEEEcCCCCe-EeecC------------CCceEEeeec-----cccceeeeEEecc
Confidence 333322 244889999999998 55553 4457888888 3344433 333
Q ss_pred cceeeeeeecCCceEEEeeecccCceeEEEEcCCCC
Q 004456 299 LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (752)
Q Consensus 299 ~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~ 334 (752)
..+..+.-+|+=+.++++. ....|++.++.+.
T Consensus 256 e~VWaL~~~~sf~~vYsG~----rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 256 EGVWALQSSPSFTHVYSGG----RDGNIYRTDLRNP 287 (735)
T ss_pred CceEEEeeCCCcceEEecC----CCCcEEecccCCc
Confidence 4466666677777776654 3345888888774
No 472
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=93.69 E-value=4 Score=45.27 Aligned_cols=172 Identities=14% Similarity=0.159 Sum_probs=91.7
Q ss_pred hhhcccEEEEEccCC-Cccc------cCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEE
Q 004456 152 DYYTTAQLVLGSLDG-TAKD------FGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223 (752)
Q Consensus 152 ~~~~~~~i~~~~~~G-~~~~------l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 223 (752)
-+.+..+|+...++| +.++ |.-+ .-+..+.|.---+.|+.+-... ..|..-.+.+.+.+.
T Consensus 994 L~aqg~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~mvyWtDv~g------------~SI~rasL~G~Ep~t 1061 (1289)
T KOG1214|consen 994 LYAQGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRERMVYWTDVAG------------RSISRASLEGAEPET 1061 (1289)
T ss_pred EEeccceEEEeecCcchhchhhhhceEecccceeeeeecccccceEEEeecCC------------CccccccccCCCCce
Confidence 333557899999977 3222 1111 3334555555555555543332 134444444444444
Q ss_pred ecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeeccc-cee
Q 004456 224 LCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL-RFR 302 (752)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~-~~~ 302 (752)
+.+.. -..+..++..--++. +||+.. ..++|-+.-+ +|+..+.|...+. ..+
T Consensus 1062 i~n~~------------L~SPEGiAVDh~~Rn-~ywtDS-----------~lD~IevA~L---dG~~rkvLf~tdLVNPR 1114 (1289)
T KOG1214|consen 1062 IVNSG------------LISPEGIAVDHIRRN-MYWTDS-----------VLDKIEVALL---DGSERKVLFYTDLVNPR 1114 (1289)
T ss_pred eeccc------------CCCccceeeeeccce-eeeecc-----------ccchhheeec---CCceeeEEEeecccCcc
Confidence 33322 122445676666777 888842 2334444444 6667777764443 345
Q ss_pred eeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEee
Q 004456 303 SVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (752)
Q Consensus 303 ~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~ 371 (752)
.++.-+=+..|+|+.|.. .+-.|-..+|++. ..+.+.....+-- ++ +.+.|..+.|-|..
T Consensus 1115 ~iv~D~~rgnLYwtDWnR-enPkIets~mDG~--NrRilin~DigLP---NG---Ltfdpfs~~LCWvD 1174 (1289)
T KOG1214|consen 1115 AIVVDPIRGNLYWTDWNR-ENPKIETSSMDGE--NRRILINTDIGLP---NG---LTFDPFSKLLCWVD 1174 (1289)
T ss_pred eEEeecccCceeeccccc-cCCcceeeccCCc--cceEEeecccCCC---CC---ceeCcccceeeEEe
Confidence 666777788899988665 3446888888874 2233332222210 01 44566666666554
No 473
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=93.38 E-value=0.17 Score=53.45 Aligned_cols=82 Identities=12% Similarity=0.138 Sum_probs=54.3
Q ss_pred hhHHHHHhCCcEE----EecCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH
Q 004456 546 TSSLIFLARRFAV----LAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA 621 (752)
Q Consensus 546 ~~~~~l~~~G~~v----~~~~~~~~~g~g~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~ 621 (752)
.+...|.+.||.. ++.+| |++- ... ........+.+.|+.+.+.. ..++.|+||||||.++..++.
T Consensus 69 ~li~~L~~~GY~~~~~l~~~pY-DWR~-----~~~-~~~~~~~~lk~~ie~~~~~~---~~kv~li~HSmGgl~~~~fl~ 138 (389)
T PF02450_consen 69 KLIENLEKLGYDRGKDLFAAPY-DWRL-----SPA-ERDEYFTKLKQLIEEAYKKN---GKKVVLIAHSMGGLVARYFLQ 138 (389)
T ss_pred HHHHHHHhcCcccCCEEEEEee-chhh-----chh-hHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCCCchHHHHHHH
Confidence 4667888877765 33222 3321 111 22344566667777666544 479999999999999999988
Q ss_pred hCCC------ceeEEEEccCCC
Q 004456 622 HAPH------LFCCGIARSGSY 637 (752)
Q Consensus 622 ~~p~------~~~~~v~~~~~~ 637 (752)
..+. .++..|.+++..
T Consensus 139 ~~~~~~W~~~~i~~~i~i~~p~ 160 (389)
T PF02450_consen 139 WMPQEEWKDKYIKRFISIGTPF 160 (389)
T ss_pred hccchhhHHhhhhEEEEeCCCC
Confidence 7643 488888888754
No 474
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=93.36 E-value=0.21 Score=46.69 Aligned_cols=45 Identities=20% Similarity=0.210 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC
Q 004456 578 FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA 623 (752)
Q Consensus 578 ~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~ 623 (752)
.....+.|+.+|.++..++.. +..+|+|.|||+|+.+...++...
T Consensus 72 a~~~ay~DV~~AF~~yL~~~n-~GRPfILaGHSQGs~~l~~LL~e~ 116 (207)
T PF11288_consen 72 AFDLAYSDVRAAFDYYLANYN-NGRPFILAGHSQGSMHLLRLLKEE 116 (207)
T ss_pred HHHhhHHHHHHHHHHHHHhcC-CCCCEEEEEeChHHHHHHHHHHHH
Confidence 345668999999988777643 236899999999999999998764
No 475
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=93.30 E-value=4.4 Score=43.63 Aligned_cols=49 Identities=8% Similarity=0.006 Sum_probs=35.1
Q ss_pred cEEEEEccCC-Cccc---cCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecC
Q 004456 157 AQLVLGSLDG-TAKD---FGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (752)
Q Consensus 157 ~~i~~~~~~G-~~~~---l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (752)
..+..||+++ .... ...+ +.+.+.+|.|+..-++.+..++ +++.+||..
T Consensus 122 sT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRD------------g~illWD~R 175 (720)
T KOG0321|consen 122 STIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRD------------GEILLWDCR 175 (720)
T ss_pred ceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCC------------CcEEEEEEe
Confidence 5777888833 3322 2333 8889999999999998887664 478888764
No 476
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=93.22 E-value=2.1 Score=39.24 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEcc
Q 004456 578 FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARS 634 (752)
Q Consensus 578 ~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~ 634 (752)
+-.....++...++-|.... -...++.++|||||+.++..++...+..+..+|++.
T Consensus 86 ~A~~ga~~L~~f~~gl~a~~-~~~~~~tv~GHSYGS~v~G~A~~~~~~~vddvv~~G 141 (177)
T PF06259_consen 86 YARAGAPRLARFLDGLRATH-GPDAHLTVVGHSYGSTVVGLAAQQGGLRVDDVVLVG 141 (177)
T ss_pred HHHHHHHHHHHHHHHhhhhc-CCCCCEEEEEecchhHHHHHHhhhCCCCcccEEEEC
Confidence 33444555555555555544 345689999999999999988877445555555443
No 477
>PRK13614 lipoprotein LpqB; Provisional
Probab=93.19 E-value=3.5 Score=45.50 Aligned_cols=149 Identities=13% Similarity=0.112 Sum_probs=77.7
Q ss_pred cEEEEEccCCCccccCCccceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCc-eeEEecCCCCCCCCCc
Q 004456 157 AQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPV 235 (752)
Q Consensus 157 ~~i~~~~~~G~~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~ 235 (752)
..++.....+..+.+........++|+++| .|.......+ ..+..+..++. +..... .......
T Consensus 365 ~~l~~~~~g~~~~~~~~g~~Lt~PS~d~~g-~vWtv~~g~~-----------~~vv~~~~~g~~~~~~~~---~~~v~~~ 429 (573)
T PRK13614 365 TTLYTVSPGQPARALTSGSTLTRPSFSPQD-WVWTAGPGGN-----------GRIVAYRPTGVAEGAQAP---TVTLTAD 429 (573)
T ss_pred cEEEEecCCCcceeeecCCCccCCcccCCC-CEEEeeCCCC-----------ceEEEEecCCCccccccc---ceeeccc
Confidence 366766665555555555668899999999 6665433221 24444443322 100000 0000000
Q ss_pred ccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeec-----ccceeeeeeecCC
Q 004456 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-----DLRFRSVSWCDDS 310 (752)
Q Consensus 236 ~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~spDg 310 (752)
++.+ ..+.++..|+||-+ ++.+...+ .+..|++.-+.-...+.++.|+.. .....+++|..++
T Consensus 430 ~l~g--~~I~~lrvSrDG~R-~Avi~~~~---------g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~ 497 (573)
T PRK13614 430 WLAG--RTVKELRVSREGVR-ALVISEQN---------GKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDS 497 (573)
T ss_pred ccCC--CeeEEEEECCCccE-EEEEEEeC---------CccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCC
Confidence 1111 12778999999999 65554222 222344433211133455555432 2467788999998
Q ss_pred ceEEEeeecccCceeEEEEcCCC
Q 004456 311 LALVNETWYKTSQTRTWLVCPGS 333 (752)
Q Consensus 311 ~~l~~~~~~~~~~~~l~~~~~~~ 333 (752)
..++... ....+...+++.+.+
T Consensus 498 sl~V~~~-~~~~~~~~~~v~v~~ 519 (573)
T PRK13614 498 TVVVTKA-SATSNVVPELLSVDA 519 (573)
T ss_pred EEEEEec-cCCCcceEEEEEeCC
Confidence 8555543 233445678888755
No 478
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=93.05 E-value=14 Score=39.11 Aligned_cols=51 Identities=8% Similarity=0.169 Sum_probs=31.1
Q ss_pred eeEEEecCCCceeEEeeccchhhhhceeeeecCCcceecccCCCEEEEEEecCCCCcEEEEEECCCCCee
Q 004456 396 FLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSS 465 (752)
Q Consensus 396 ~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d~~~g~~~ 465 (752)
.|+.+|.++|+. +|..+.. ...+...+++.+++.. ....++.+|..+|+..
T Consensus 252 ~l~a~d~~tG~~--~W~~~~~-------------~~~~p~~~~~~vyv~~----~~G~l~~~d~~tG~~~ 302 (377)
T TIGR03300 252 RVAALDLRSGRV--LWKRDAS-------------SYQGPAVDDNRLYVTD----ADGVVVALDRRSGSEL 302 (377)
T ss_pred EEEEEECCCCcE--EEeeccC-------------CccCceEeCCEEEEEC----CCCeEEEEECCCCcEE
Confidence 599999988864 3543311 0112334566666553 2457999999888754
No 479
>PRK13615 lipoprotein LpqB; Provisional
Probab=92.65 E-value=9.2 Score=42.14 Aligned_cols=142 Identities=15% Similarity=0.112 Sum_probs=77.3
Q ss_pred EEEEEccCCCccccCCccceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCccc
Q 004456 158 QLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCY 237 (752)
Q Consensus 158 ~i~~~~~~G~~~~l~~~~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~ 237 (752)
.+++....|..+.+........++|+++| .|........ ..+.....++. ...+ ..+....
T Consensus 356 ~l~vg~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtv~~g~~-----------~~l~~~~~~G~-~~~v-~v~~~~~----- 416 (557)
T PRK13615 356 VWSVGDGDRDAVLLDTRPGLVAPSLDAQG-YVWSTPASDP-----------RGLVAWGPDGV-GHPV-AVSWTAT----- 416 (557)
T ss_pred eEEEecCCCcceeeccCCccccCcCcCCC-CEEEEeCCCc-----------eEEEEecCCCc-eEEe-eccccCC-----
Confidence 45555445555555555668899999999 6665433321 12223332222 2222 1221111
Q ss_pred CCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEE-e------ecccceeeeeeecCC
Q 004456 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL-H------KLDLRFRSVSWCDDS 310 (752)
Q Consensus 238 ~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-~------~~~~~~~~~~~spDg 310 (752)
..+.++..|+||.+ ++.+...+ ..++|++.-+.- .++.++.| + .......++.|..++
T Consensus 417 ----~~I~~lrvSrDG~R-~Avi~~~~---------g~~~V~va~V~R-~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~ 481 (557)
T PRK13615 417 ----GRVVSLEVARDGAR-VLVQLETG---------AGPQLLVASIVR-DGGVPTSLTTTPLELLASPGTPLDATWVDEL 481 (557)
T ss_pred ----CeeEEEEeCCCccE-EEEEEecC---------CCCEEEEEEEEe-CCCcceEeeeccEEcccCcCcceeeEEcCCC
Confidence 22778999999999 66654221 223455533321 23434444 2 223367788999999
Q ss_pred ceEEEeeecccCceeEEEEcCCCC
Q 004456 311 LALVNETWYKTSQTRTWLVCPGSK 334 (752)
Q Consensus 311 ~~l~~~~~~~~~~~~l~~~~~~~~ 334 (752)
+..+.... ...+..++++.+.+.
T Consensus 482 ~laVl~~~-~~~~~~v~~v~v~g~ 504 (557)
T PRK13615 482 DVATLTLA-PDGERQVELHQVGGP 504 (557)
T ss_pred EEEEEecc-CCCCceEEEEECCCc
Confidence 85555432 224456888888874
No 480
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.62 E-value=5.6 Score=41.08 Aligned_cols=186 Identities=12% Similarity=0.065 Sum_probs=83.3
Q ss_pred ccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEee-------cccceeeeeeecC----Cce
Q 004456 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-------LDLRFRSVSWCDD----SLA 312 (752)
Q Consensus 244 ~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~spD----g~~ 312 (752)
++.|+|.|||+ |+++. ..+.|++++. ++.....+.. .......++++|+ +..
T Consensus 4 P~~~a~~pdG~--l~v~e------------~~G~i~~~~~---~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~l 66 (331)
T PF07995_consen 4 PRSMAFLPDGR--LLVAE------------RSGRIWVVDK---DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYL 66 (331)
T ss_dssp EEEEEEETTSC--EEEEE------------TTTEEEEEET---TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EE
T ss_pred ceEEEEeCCCc--EEEEe------------CCceEEEEeC---CCcCcceecccccccccccCCcccceeccccCCCCEE
Confidence 57899999997 66664 3457788774 3322222222 2334567788885 433
Q ss_pred EEEeeec----ccCceeEEEEcCCCCC---ccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcceEEEEcc
Q 004456 313 LVNETWY----KTSQTRTWLVCPGSKD---VAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNG 385 (752)
Q Consensus 313 l~~~~~~----~~~~~~l~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 385 (752)
.++.+.. ......|.++....+. ...+.+...........+..-.+.+.||| +|++...+. .+ ..
T Consensus 67 Yv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~-~~------~~ 138 (331)
T PF07995_consen 67 YVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDG-GN------DD 138 (331)
T ss_dssp EEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-T-TT------GG
T ss_pred EEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCC-CC------cc
Confidence 3333311 1133567777765531 11223322211100011122337799999 666665432 11 11
Q ss_pred CCCCCCCCCCeeEEEecCCCceeEEeeccch----hhhhceeee-ecCCcceecccCCCEEEEEEecCCCCcEEEEEE
Q 004456 386 RGFTPEGNIPFLDLFDINTGSKERIWESNRE----KYFETAVAL-VFGQGEEDINLNQLKILTSKESKTEITQYHILS 458 (752)
Q Consensus 386 ~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~----~~~~~~~~~-~~~~~~~~~s~d~~~l~~~~~~~~~~~~i~~~d 458 (752)
...........|.+++.. |+. ..++.. .....+.+. ......++|.|....|+.+..+....-+|.++.
T Consensus 139 ~~~~~~~~~G~ilri~~d-G~~---p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~ 212 (331)
T PF07995_consen 139 NAQDPNSLRGKILRIDPD-GSI---PADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIE 212 (331)
T ss_dssp GGCSTTSSTTEEEEEETT-SSB----TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-
T ss_pred cccccccccceEEEeccc-CcC---CCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEec
Confidence 122223335568888864 331 111100 000001100 111223678888666666666555555666554
No 481
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=92.59 E-value=8.9 Score=39.69 Aligned_cols=120 Identities=13% Similarity=0.074 Sum_probs=67.3
Q ss_pred cccCCc-cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeE-EecCCC---CCCCCCcccC--Ccc
Q 004456 169 KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLP---PAEDIPVCYN--SVR 241 (752)
Q Consensus 169 ~~l~~~-~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~---~~~~~~~~~~--~~~ 241 (752)
+.+..+ -.+..+.+|||+++++-.+... .|.-|++.++... .+...+ .....|.... .+.
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g-------------~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~ 202 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDG-------------TILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHV 202 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCc-------------ceeeeehhcCcccccccccchhhhhccCCCCccccccc
Confidence 334444 6778999999999997765543 5666776655422 222221 0111222211 223
Q ss_pred ccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeE-EeecccceeeeeeecCCceEEEee
Q 004456 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFRSVSWCDDSLALVNET 317 (752)
Q Consensus 242 ~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~~~~~~~~~~~spDg~~l~~~~ 317 (752)
..+..++.|+||++ |++.. ...++.+|+. .+.++.. +......+..++|=..-..++..+
T Consensus 203 keil~~avS~Dgky-latgg------------~d~~v~Iw~~---~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s 263 (479)
T KOG0299|consen 203 KEILTLAVSSDGKY-LATGG------------RDRHVQIWDC---DTLEHVKVFKGHRGAVSSLAFRKGTSELYSAS 263 (479)
T ss_pred ceeEEEEEcCCCcE-EEecC------------CCceEEEecC---cccchhhcccccccceeeeeeecCccceeeee
Confidence 34556899999997 65552 2225668988 3444444 455666677777654433344433
No 482
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.50 E-value=23 Score=40.23 Aligned_cols=118 Identities=12% Similarity=0.122 Sum_probs=76.0
Q ss_pred eeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCC
Q 004456 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (752)
Q Consensus 32 ~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (752)
++-..+|.|.--+|..... ++.-+||-+..-+ -..++-.+. +.|+.+.|.|+.-.++-. +
T Consensus 11 RvKglsFHP~rPwILtslH--------sG~IQlWDYRM~t-li~rFdeHd-----GpVRgv~FH~~qplFVSG-----G- 70 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLH--------SGVIQLWDYRMGT-LIDRFDEHD-----GPVRGVDFHPTQPLFVSG-----G- 70 (1202)
T ss_pred cccceecCCCCCEEEEeec--------Cceeeeehhhhhh-HHhhhhccC-----CccceeeecCCCCeEEec-----C-
Confidence 5667889999999987643 5556666554221 122232222 257889999998744422 1
Q ss_pred CCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEccCC--CccccCCc-cceeccccCCCCce
Q 004456 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--TAKDFGTP-AVYTAVEPSPDQKY 188 (752)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~G--~~~~l~~~-~~~~~~~~SpDGk~ 188 (752)
....|.+|+.+. -.-.|..+ ..+....|.+.==+
T Consensus 71 -------------------------------------------DDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPW 107 (1202)
T KOG0292|consen 71 -------------------------------------------DDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPW 107 (1202)
T ss_pred -------------------------------------------CccEEEEEecccceehhhhccccceeEEeeccCCCce
Confidence 115677777733 33455555 78888999988888
Q ss_pred EEEEecccCccccccccCccccEEEEecCCceeEEec
Q 004456 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC 225 (752)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 225 (752)
|+-.+.+ ..|.+|+-.+++...+.
T Consensus 108 IlSASDD-------------QTIrIWNwqsr~~iavl 131 (1202)
T KOG0292|consen 108 ILSASDD-------------QTIRIWNWQSRKCIAVL 131 (1202)
T ss_pred EEEccCC-------------CeEEEEeccCCceEEEE
Confidence 8776655 37999998887655443
No 483
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=92.33 E-value=8.5 Score=42.66 Aligned_cols=59 Identities=22% Similarity=0.336 Sum_probs=38.1
Q ss_pred ecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCC
Q 004456 24 VHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS 98 (752)
Q Consensus 24 i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg 98 (752)
+++-+...+-....|||.| .|||. .+.-+.++|.-+-+..+....+. ..+....|+|--
T Consensus 9 lpG~l~~sN~~A~Dw~~~G-LiAyg-----------shslV~VVDs~s~q~iqsie~h~----s~V~~VrWap~~ 67 (1062)
T KOG1912|consen 9 LPGPLSRSNRNAADWSPSG-LIAYG-----------SHSLVSVVDSRSLQLIQSIELHQ----SAVTSVRWAPAP 67 (1062)
T ss_pred CCCCCCcccccccccCccc-eEEEe-----------cCceEEEEehhhhhhhhccccCc----cceeEEEeccCC
Confidence 4443333356778999999 89994 44788899876655544433332 146677898753
No 484
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.23 E-value=0.99 Score=46.80 Aligned_cols=172 Identities=12% Similarity=0.179 Sum_probs=73.0
Q ss_pred ceeccccCCCCceEEEEecccCcccc-------ccccCccccEEEEecCCceeEEecCCCCCCCCCcccCCcccccccee
Q 004456 176 VYTAVEPSPDQKYVLITSMHRPYSYK-------VPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSIS 248 (752)
Q Consensus 176 ~~~~~~~SpDGk~l~~~~~~~~~~~~-------~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 248 (752)
.-..+.|.|--+.++-+....+.... +....|...+.+||...++..+..+.......| -++.
T Consensus 182 ~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~p----------LEvR 251 (461)
T PF05694_consen 182 FGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMP----------LEVR 251 (461)
T ss_dssp ----EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEE----------EEEE
T ss_pred CCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCce----------EEEE
Confidence 34578888877777776655432111 112356789999999999888877665433333 2444
Q ss_pred eeeCCCceEEEEEeccCCCCccccCccceEEeccCC-------------CCCCCCCeEEeec-------ccceeeeeeec
Q 004456 249 WRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAE-------------PAEGEKPEILHKL-------DLRFRSVSWCD 308 (752)
Q Consensus 249 wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~~~~l~~~-------~~~~~~~~~sp 308 (752)
|..|=+..--|+... -...|+++--. +.+.-+...|... ..-+.++..|.
T Consensus 252 flH~P~~~~gFvg~a----------Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl 321 (461)
T PF05694_consen 252 FLHDPDANYGFVGCA----------LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL 321 (461)
T ss_dssp E-SSTT--EEEEEEE------------EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T
T ss_pred ecCCCCccceEEEEe----------ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc
Confidence 433322223333211 01122221110 0000001111111 33457788999
Q ss_pred CCceEEEeeecccCceeEEEEcCCCCCccceecccccccccc------------CCCCCCceeeCCCCCeEEEee
Q 004456 309 DSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVY------------SDPGSPMMTRTSTGTNVIAKI 371 (752)
Q Consensus 309 Dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~------------~~~~~p~~~~s~dg~~l~~~~ 371 (752)
|.++|+++.+..+ +|..+|+.+. ..++.+.....+... ...+.-++.-|.|||+|++++
T Consensus 322 DDrfLYvs~W~~G---dvrqYDISDP-~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 322 DDRFLYVSNWLHG---DVRQYDISDP-FNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp TS-EEEEEETTTT---EEEEEE-SST-TS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred CCCEEEEEcccCC---cEEEEecCCC-CCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 9999999876553 5888888876 445544322211110 011223566899999999987
No 485
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=92.00 E-value=5.3 Score=40.76 Aligned_cols=220 Identities=13% Similarity=0.086 Sum_probs=0.0
Q ss_pred eeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCccccccccceEEecCCcEEEEEecCCCCCCCC
Q 004456 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (752)
Q Consensus 35 ~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~ 114 (752)
..+|...|..+..+ +.---||.++.+++....++......---....+..++ ...|+|+
T Consensus 119 Gl~f~~~ggdL~Va----------DAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFT---------- 177 (376)
T KOG1520|consen 119 GIRFDKKGGDLYVA----------DAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDP-EGVVYFT---------- 177 (376)
T ss_pred eEEeccCCCeEEEE----------ecceeeEEECCCCCcceeccccccCeeeeecCceeEcC-CCeEEEe----------
Q ss_pred CccCCCCCceecccccccccccchhhccCChhhhhhhhhh-----cccEEEEEcc-CCCccccCCc-cceeccccCCCCc
Q 004456 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYY-----TTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQK 187 (752)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~~~i~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk 187 (752)
......+.+.+-+. ..++++.+|. +.+.+-|-+. .-...++.|||+.
T Consensus 178 --------------------------DSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~s 231 (376)
T KOG1520|consen 178 --------------------------DSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGS 231 (376)
T ss_pred --------------------------ccccccchhheEEeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCC
Q ss_pred eEEEEecccCccccccccCccccEEEEecCCcee---EEecC-CCCCCCCCcccCCccccccceeeeeCCCceEEEEEec
Q 004456 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV---RELCD-LPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (752)
Q Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~---~~l~~-~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~ 263 (752)
+|++..... ..+..+=+.+... ..+.+ .++. +-++.-+++|..-+...+..
T Consensus 232 fvl~~Et~~------------~ri~rywi~g~k~gt~EvFa~~LPG~-------------PDNIR~~~~G~fWVal~~~~ 286 (376)
T KOG1520|consen 232 FVLVAETTT------------ARIKRYWIKGPKAGTSEVFAEGLPGY-------------PDNIRRDSTGHFWVALHSKR 286 (376)
T ss_pred EEEEEeecc------------ceeeeeEecCCccCchhhHhhcCCCC-------------CcceeECCCCCEEEEEeccc
Q ss_pred cCCCCccccCccceEEeccC----------CCCCCCCC---eEEeecccceeeeeeecCCceEEEeeecccCceeEEE
Q 004456 264 DRGDANVEVSPRDIIYTQPA----------EPAEGEKP---EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWL 328 (752)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~~~----------~~~~~~~~---~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~ 328 (752)
+.-.........-+-++..+ . .+..+ ..+.+.++.+-..---++|+.+.+.+......++||+
T Consensus 287 ~~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~--~~~~p~~~V~~~d~~G~il~~lhD~~g~~~~~~sev~E~dg~Lyi 362 (376)
T KOG1520|consen 287 STLWRLLMKYPWVRKFIAKLPKYMELLYFLN--NGGKPHSAVKLSDETGKILESLHDKEGKVITLVSEVGEHDGHLYI 362 (376)
T ss_pred chHHHhhhcChHHHHHHHhhccchhhhhhhh--ccCCCceEEEEecCCCcEEEEEecCCCCceEEEEEEeecCCeEEE
No 486
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=91.99 E-value=2.2 Score=44.94 Aligned_cols=130 Identities=16% Similarity=0.077 Sum_probs=80.8
Q ss_pred CCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchhHHHHHhCCcEEEecCCCCCCCCC
Q 004456 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG 570 (752)
Q Consensus 491 ~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g 570 (752)
.+...+=+.|.+..+... ..|+-|++-|-+... ..+-.... ..+.....+-|-.|+... -+=||
T Consensus 67 ~~~~~Qq~~y~n~~~~~~---~gPiFLmIGGEgp~~--------~~wv~~~~--~~~~~~AkkfgA~v~~lE---HRFYG 130 (514)
T KOG2182|consen 67 NGKFFQQRFYNNNQWAKP---GGPIFLMIGGEGPES--------DKWVGNEN--LTWLQWAKKFGATVFQLE---HRFYG 130 (514)
T ss_pred hhhhhhhheeeccccccC---CCceEEEEcCCCCCC--------CCccccCc--chHHHHHHHhCCeeEEee---eeccc
Confidence 333444455556554311 258888887753221 11111111 122333346888888733 33344
Q ss_pred CCCC-------Cchh--HHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCC
Q 004456 571 DKLP-------NDRF--VEQLVSSAEAAVEEVVRRG-VADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (752)
Q Consensus 571 ~~~~-------~~~~--~~~~~~d~~~~~~~l~~~~-~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~ 636 (752)
.+.+ ...+ ..+.+.|+...|+.+..+- .-+..+++.+|.|+=|.+++++=..+|+.+.++|+.+++
T Consensus 131 ~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSap 206 (514)
T KOG2182|consen 131 QSSPIGDLSTSNLKYLSSLQALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAP 206 (514)
T ss_pred cCCCCCCCcccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccc
Confidence 3311 1122 2366788888888888775 345569999999999999999999999999999988865
No 487
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.99 E-value=21 Score=38.70 Aligned_cols=364 Identities=12% Similarity=0.068 Sum_probs=0.0
Q ss_pred CcceeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCc-ceeccCCC
Q 004456 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESP 81 (752)
Q Consensus 3 ~~~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~-~~~lt~~~ 81 (752)
|...+-+++-.. .+..+=-.+.+-+ ++..+|=+--.||+.. +++.+|.|++..+++ .+....++
T Consensus 33 ynG~V~IWnyet----qtmVksfeV~~~P-vRa~kfiaRknWiv~G----------sDD~~IrVfnynt~ekV~~FeAH~ 97 (794)
T KOG0276|consen 33 YNGDVQIWNYET----QTMVKSFEVSEVP-VRAAKFIARKNWIVTG----------SDDMQIRVFNYNTGEKVKTFEAHS 97 (794)
T ss_pred ecCeeEEEeccc----ceeeeeeeecccc-hhhheeeeccceEEEe----------cCCceEEEEecccceeeEEeeccc
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEE
Q 004456 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (752)
Q Consensus 82 ~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~ 161 (752)
. .++.++-.|.--+++-++.+ ..|.+
T Consensus 98 D-----yIR~iavHPt~P~vLtsSDD-------------------------------------------------m~iKl 123 (794)
T KOG0276|consen 98 D-----YIRSIAVHPTLPYVLTSSDD-------------------------------------------------MTIKL 123 (794)
T ss_pred c-----ceeeeeecCCCCeEEecCCc-------------------------------------------------cEEEE
Q ss_pred EccCC--CccccCCc--cceeccccCC-CCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCCcc
Q 004456 162 GSLDG--TAKDFGTP--AVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVC 236 (752)
Q Consensus 162 ~~~~G--~~~~l~~~--~~~~~~~~Sp-DGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 236 (752)
|+.++ ...+..++ -.+..++|.| |.+..+-.+.++ .+.+|.+.+..... .
T Consensus 124 W~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr-------------TVKVWslgs~~~nf------------T 178 (794)
T KOG0276|consen 124 WDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR-------------TVKVWSLGSPHPNF------------T 178 (794)
T ss_pred eeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc-------------cEEEEEcCCCCCce------------e
Q ss_pred cCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEe
Q 004456 237 YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNE 316 (752)
Q Consensus 237 ~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~ 316 (752)
+.++.-|+.-+-+-+-|.+ -|.++.. ..-.+-+||-. +....+.|......+....|.|.=-.|+..
T Consensus 179 l~gHekGVN~Vdyy~~gdk-pylIsga----------DD~tiKvWDyQ--tk~CV~TLeGHt~Nvs~v~fhp~lpiiisg 245 (794)
T KOG0276|consen 179 LEGHEKGVNCVDYYTGGDK-PYLISGA----------DDLTIKVWDYQ--TKSCVQTLEGHTNNVSFVFFHPELPIIISG 245 (794)
T ss_pred eeccccCcceEEeccCCCc-ceEEecC----------CCceEEEeecc--hHHHHHHhhcccccceEEEecCCCcEEEEe
Q ss_pred eeccc-----------------CceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEeeeecCCcce
Q 004456 317 TWYKT-----------------SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQI 379 (752)
Q Consensus 317 ~~~~~-----------------~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~~~~~~~ 379 (752)
+++.+ +-.++|-+....+.+....-.+...-..-.....|.++-++.| .|+++.+..-..-.
T Consensus 246 sEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~~g-KIiwa~~~ei~~~~ 324 (794)
T KOG0276|consen 246 SEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDSNG-KIIWAVHSEIQAVN 324 (794)
T ss_pred cCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeecCCc-cEEEEcCceeeeee
Q ss_pred EEEEccCCCCCCCCCCeeEEEecCCCceeEEeeccchhhhhceeeeecCCcceecccCCCEEEEEEecCC----------
Q 004456 380 YILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKT---------- 449 (752)
Q Consensus 380 ~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~~~~---------- 449 (752)
..-+..++-..++.+.-|-+-++-+-+..+.+-.. .....-+.+-=||++++|++-...
T Consensus 325 ~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~h-----------sPNGrfV~VcgdGEyiIyTala~RnK~fG~~~eF 393 (794)
T KOG0276|consen 325 LKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAH-----------SPNGRFVVVCGDGEYIIYTALALRNKAFGSGLEF 393 (794)
T ss_pred ceeccCcccccCCccccchhhhccccccchHHhcc-----------CCCCcEEEEecCccEEEEEeeehhhcccccceeE
Q ss_pred ---CCcEEEEEECCCCCeeEeecCCCCCCCcCCCceEEE
Q 004456 450 ---EITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMI 485 (752)
Q Consensus 450 ---~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~ 485 (752)
.-+..|.+.-.++..+...+..+...--.++..+.+
T Consensus 394 vw~~dsne~avRes~~~vki~knfke~ksi~~~~~~e~i 432 (794)
T KOG0276|consen 394 VWAADSNEFAVRESNGNVKIFKNFKEHKSIRPDMSAEGI 432 (794)
T ss_pred EEcCCCCeEEEEecCCceEEEecceeccccccccceeee
No 488
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=91.97 E-value=11 Score=40.02 Aligned_cols=52 Identities=17% Similarity=0.024 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCceeEEEEccCCCCC
Q 004456 586 AEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK 639 (752)
Q Consensus 586 ~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~p~~~~~~v~~~~~~~~ 639 (752)
+.++|+...+.-..+.+.+.|.|.|||.+-|+.+++.- .-.|+|+.-|..++
T Consensus 341 I~~~I~~~L~~LgF~~~qLILSGlSMGTfgAlYYga~l--~P~AIiVgKPL~NL 392 (511)
T TIGR03712 341 IINVIQEKLDYLGFDHDQLILSGLSMGTFGALYYGAKL--SPHAIIVGKPLVNL 392 (511)
T ss_pred HHHHHHHHHHHhCCCHHHeeeccccccchhhhhhcccC--CCceEEEcCcccch
Confidence 33444333333346788999999999999999999875 23678888887663
No 489
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=91.94 E-value=1.2 Score=47.22 Aligned_cols=151 Identities=9% Similarity=-0.004 Sum_probs=82.7
Q ss_pred EEEEEEcCCCcEEEEEEEeCCCCCCCCCCCceEEEEECCCCCcCcccCCcccCCCCccCCCCchh---HHHHHhCCcEEE
Q 004456 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTS---SLIFLARRFAVL 559 (752)
Q Consensus 483 ~~~~~~~~~g~~~~~~l~~P~~~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~G~~v~ 559 (752)
=.+.+....+..+..+++.... .|. ..|+||++-|||.=+.-......-+|-....-+..+ .-.+ .+-..+|
T Consensus 47 GYv~v~~~~~~~LFYwf~eS~~-~P~---~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySW-nk~aNiL 121 (454)
T KOG1282|consen 47 GYVTVNESEGRQLFYWFFESEN-NPE---TDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSW-NKEANIL 121 (454)
T ss_pred ceEECCCCCCceEEEEEEEccC-CCC---CCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccc-cccccEE
Confidence 3455555567788888887653 222 369999999998542111111111121111000000 0000 1112333
Q ss_pred ecCCCCCCCCCCCCCC---chhHHHHHHHHHHHH-HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh----C------CC
Q 004456 560 AGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAV-EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH----A------PH 625 (752)
Q Consensus 560 ~~~~~~~~g~g~~~~~---~~~~~~~~~d~~~~~-~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~----~------p~ 625 (752)
..+..-+.|++-+... ..--....+|...++ +|+.+.+......+.|.|-|++|+.+-.+|.. + +-
T Consensus 122 fLd~PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~i 201 (454)
T KOG1282|consen 122 FLDQPVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNI 201 (454)
T ss_pred EEecCCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcc
Confidence 3344445555432221 112234556666665 78887776667889999999999777666542 2 12
Q ss_pred ceeEEEEccCCCC
Q 004456 626 LFCCGIARSGSYN 638 (752)
Q Consensus 626 ~~~~~v~~~~~~~ 638 (752)
.+++.++..|..+
T Consensus 202 NLkG~~IGNg~td 214 (454)
T KOG1282|consen 202 NLKGYAIGNGLTD 214 (454)
T ss_pred cceEEEecCcccC
Confidence 5789999888765
No 490
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=91.74 E-value=1.1 Score=35.60 Aligned_cols=81 Identities=12% Similarity=0.108 Sum_probs=49.6
Q ss_pred ceeeeeCCCceEEEEEeccCCCCc------cccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecCCceEEEeeec
Q 004456 246 SISWRADKPSTLYWVEAQDRGDAN------VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWY 319 (752)
Q Consensus 246 ~~~wspDG~~~l~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~ 319 (752)
++..++++.. +||+..+...... ......++|+.+|. .+++.+.|...-.-...++.|+|++.|+++.-
T Consensus 2 dldv~~~~g~-vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp---~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et- 76 (89)
T PF03088_consen 2 DLDVDQDTGT-VYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDP---STKETTVLLDGLYFPNGVALSPDESFVLVAET- 76 (89)
T ss_dssp EEEE-TTT---EEEEES-SS--TTGHHHHHHHT---EEEEEEET---TTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG-
T ss_pred ceeEecCCCE-EEEEeCccccCccceeeeeecCCCCcCEEEEEC---CCCeEEEehhCCCccCeEEEcCCCCEEEEEec-
Confidence 3567777333 8898765432211 22345678999998 67777777777667778999999999988652
Q ss_pred ccCceeEEEEcCCC
Q 004456 320 KTSQTRTWLVCPGS 333 (752)
Q Consensus 320 ~~~~~~l~~~~~~~ 333 (752)
...+|.++-+++
T Consensus 77 --~~~Ri~rywl~G 88 (89)
T PF03088_consen 77 --GRYRILRYWLKG 88 (89)
T ss_dssp --GGTEEEEEESSS
T ss_pred --cCceEEEEEEeC
Confidence 334677776654
No 491
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=91.69 E-value=24 Score=38.86 Aligned_cols=103 Identities=10% Similarity=-0.011 Sum_probs=57.4
Q ss_pred cccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEe---ecccceeeeeeecCCceEEEeeec
Q 004456 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH---KLDLRFRSVSWCDDSLALVNETWY 319 (752)
Q Consensus 243 ~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~---~~~~~~~~~~~spDg~~l~~~~~~ 319 (752)
.+..+.++|=+.. ++.+.. + + .+.+|.- + .....+. .....+.+++|||---.+++....
T Consensus 400 ~v~~v~~nPF~~k-~fls~g----D------W--~vriWs~---~-~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~ 462 (555)
T KOG1587|consen 400 PVYAVSRNPFYPK-NFLSVG----D------W--TVRIWSE---D-VIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDG 462 (555)
T ss_pred ceEeeecCCCccc-eeeeec----c------c--eeEeccc---c-CCCCcchhhhhccceeeeeEEcCcCceEEEEEcC
Confidence 3567888888776 333321 1 2 4444443 1 1222222 333448889999998888887644
Q ss_pred ccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEEEee
Q 004456 320 KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (752)
Q Consensus 320 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~ 371 (752)
++ .|.++|+.-..-+ ......... ...+...|++.|+.|+...
T Consensus 463 ~G---~l~iWDLl~~~~~--Pv~s~~~~~----~~l~~~~~s~~g~~lavGd 505 (555)
T KOG1587|consen 463 DG---NLDIWDLLQDDEE--PVLSQKVCS----PALTRVRWSPNGKLLAVGD 505 (555)
T ss_pred CC---ceehhhhhccccC--Ccccccccc----cccceeecCCCCcEEEEec
Confidence 43 4777777653222 222221111 1333356999999998876
No 492
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=91.63 E-value=3.1 Score=42.11 Aligned_cols=41 Identities=7% Similarity=-0.027 Sum_probs=27.6
Q ss_pred CCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCC
Q 004456 289 EKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (752)
Q Consensus 289 ~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~ 333 (752)
+..+.+...-..+.+++||||++.|+++. ...+|++.....
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~~IitaD----RDEkIRvs~ypa 182 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQFIITAD----RDEKIRVSRYPA 182 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCCEEEEec----CCceEEEEecCc
Confidence 34444455555678899999999888865 233577766554
No 493
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=91.51 E-value=26 Score=38.77 Aligned_cols=141 Identities=13% Similarity=0.058 Sum_probs=77.8
Q ss_pred ccEEEEecCCceeEEecCCCCCCCCCcccCCccccccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCC
Q 004456 209 QKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG 288 (752)
Q Consensus 209 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 288 (752)
..+.+|+++++....+..... ..++.+..+ +.. ++..+ ..+.|-+|++. .+
T Consensus 311 ~tVkVW~v~n~~~l~l~~~h~------------~~V~~v~~~--~~~-lvsgs------------~d~~v~VW~~~--~~ 361 (537)
T KOG0274|consen 311 NTVKVWDVTNGACLNLLRGHT------------GPVNCVQLD--EPL-LVSGS------------YDGTVKVWDPR--TG 361 (537)
T ss_pred ceEEEEeccCcceEEEecccc------------ccEEEEEec--CCE-EEEEe------------cCceEEEEEhh--hc
Confidence 589999999776666555321 114455555 443 44443 33367778873 33
Q ss_pred CCCeEEeecccceeeeeeecCCceEEEeeecccCceeEEEEcCCCCCccceeccccccccccCCCCCCceeeCCCCCeEE
Q 004456 289 EKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVI 368 (752)
Q Consensus 289 ~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~ 368 (752)
.-.+.+.....++..+.+.+. ..++-++ .+ ..|.++|+.+.. .-.........-+ -.-...++.|+
T Consensus 362 ~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs-~D---~~IkvWdl~~~~-~c~~tl~~h~~~v--------~~l~~~~~~Lv 427 (537)
T KOG0274|consen 362 KCLKSLSGHTGRVYSLIVDSE-NRLLSGS-LD---TTIKVWDLRTKR-KCIHTLQGHTSLV--------SSLLLRDNFLV 427 (537)
T ss_pred eeeeeecCCcceEEEEEecCc-ceEEeee-ec---cceEeecCCchh-hhhhhhcCCcccc--------cccccccceeE
Confidence 445556667777777765544 4444444 22 458888887741 1111111111110 00134556666
Q ss_pred EeeeecCCcceEEEEccCCCCCCCCCCeeEEEecCCCceeEEeec
Q 004456 369 AKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 413 (752)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~ 413 (752)
..+.++ .|.+||.++++..+....
T Consensus 428 s~~aD~---------------------~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 428 SSSADG---------------------TIKLWDAEEGECLRTLEG 451 (537)
T ss_pred eccccc---------------------cEEEeecccCceeeeecc
Confidence 665331 589999999887666544
No 494
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.33 E-value=18 Score=38.74 Aligned_cols=111 Identities=11% Similarity=0.069 Sum_probs=56.2
Q ss_pred ccceeeeeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEE-------ee-cccceeeeeeecCC-----
Q 004456 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL-------HK-LDLRFRSVSWCDDS----- 310 (752)
Q Consensus 244 ~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-------~~-~~~~~~~~~~spDg----- 310 (752)
++.++|.|||+ |++++. ..++|++++. .++....+ .. .......++++||-
T Consensus 32 Pw~maflPDG~--llVtER-----------~~G~I~~v~~---~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~ 95 (454)
T TIGR03606 32 PWALLWGPDNQ--LWVTER-----------ATGKILRVNP---ETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKG 95 (454)
T ss_pred ceEEEEcCCCe--EEEEEe-----------cCCEEEEEeC---CCCceeeeecCCceeccCCCCceeeEEECCCccccCC
Confidence 67899999997 666642 1357777764 22222211 11 34456778898874
Q ss_pred -ceEEEe--eeccc----CceeEEEEcCCCCC---ccceeccccccccccCCCCCCceeeCCCCCeEEEeeee
Q 004456 311 -LALVNE--TWYKT----SQTRTWLVCPGSKD---VAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (752)
Q Consensus 311 -~~l~~~--~~~~~----~~~~l~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~p~~~~s~dg~~l~~~~~~ 373 (752)
++|++. ..... ....|.++.++... ...+.+........ . +..-.+.+.|||+ |+++..+
T Consensus 96 n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~-~-H~GgrI~FgPDG~-LYVs~GD 165 (454)
T TIGR03606 96 NPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGN-D-HNGGRLVFGPDGK-IYYTIGE 165 (454)
T ss_pred CcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCC-C-cCCceEEECCCCc-EEEEECC
Confidence 233332 21111 24578777765320 11223322111110 1 1223366899996 6666644
No 495
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=90.90 E-value=0.59 Score=45.49 Aligned_cols=52 Identities=15% Similarity=0.126 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-----CCceeEEEEccC
Q 004456 582 LVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-----PHLFCCGIARSG 635 (752)
Q Consensus 582 ~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~~~~~-----p~~~~~~v~~~~ 635 (752)
...++...+..++++. ...+|.+.|||+||.+|..++... +..+.+....+|
T Consensus 110 ~~~~~~~~~~~~~~~~--p~~~i~vtGHSLGGaiA~l~a~~l~~~~~~~~i~~~tFg~P 166 (229)
T cd00519 110 LYNQVLPELKSALKQY--PDYKIIVTGHSLGGALASLLALDLRLRGPGSDVTVYTFGQP 166 (229)
T ss_pred HHHHHHHHHHHHHhhC--CCceEEEEccCHHHHHHHHHHHHHHhhCCCCceEEEEeCCC
Confidence 3444444444444432 246899999999999999887652 233454444444
No 496
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=90.83 E-value=2.5 Score=45.95 Aligned_cols=55 Identities=18% Similarity=0.407 Sum_probs=34.4
Q ss_pred eceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcc--eeccCCCCccccccccceEEecCCcEEEEE
Q 004456 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (752)
Q Consensus 33 ~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~--~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (752)
+....|.-||++|+.+.. ++.+.|-.++|... +.| .+. ......||+|.+.++|.
T Consensus 118 V~SmsWn~dG~kIcIvYe----------DGavIVGsvdGNRIwgKeL---kg~----~l~hv~ws~D~~~~Lf~ 174 (1189)
T KOG2041|consen 118 VVSMSWNLDGTKICIVYE----------DGAVIVGSVDGNRIWGKEL---KGQ----LLAHVLWSEDLEQALFK 174 (1189)
T ss_pred EEEEEEcCCCcEEEEEEc----------cCCEEEEeeccceecchhc---chh----eccceeecccHHHHHhh
Confidence 677899999999988743 24455555555331 111 000 12345899999999886
No 497
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=90.77 E-value=12 Score=36.02 Aligned_cols=187 Identities=10% Similarity=0.022 Sum_probs=0.0
Q ss_pred ceeEEeecCCCCCCCCceeecCCCCCceeceeEecCCCCeEEEeeccccccccccCcceEEEEEcccCcceeccCCCCcc
Q 004456 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (752)
Q Consensus 5 ~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~ia~~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~ 84 (752)
.++.++.++. +..+.+.-.+. -......+|||+++++.+.. ....=+|-+|-++.....++..+..+
T Consensus 138 ht~k~~~~~~----~s~~~~~h~~~-~~~ns~~~snd~~~~~~Vgd--------s~~Vf~y~id~~sey~~~~~~a~t~D 204 (344)
T KOG4532|consen 138 HTGKTMVVSG----DSNKFAVHNQN-LTQNSLHYSNDPSWGSSVGD--------SRRVFRYAIDDESEYIENIYEAPTSD 204 (344)
T ss_pred cceeEEEEec----Ccccceeeccc-cceeeeEEcCCCceEEEecC--------CCcceEEEeCCccceeeeeEecccCC
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCccCCCCCceecccccccccccchhhccCChhhhhhhhhhcccEEEEEcc
Q 004456 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (752)
Q Consensus 85 ~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~ 164 (752)
.-..-+||..+...+.++.+ +.+-++|+
T Consensus 205 ---~gF~~S~s~~~~~FAv~~Qd-------------------------------------------------g~~~I~DV 232 (344)
T KOG4532|consen 205 ---HGFYNSFSENDLQFAVVFQD-------------------------------------------------GTCAIYDV 232 (344)
T ss_pred ---CceeeeeccCcceEEEEecC-------------------------------------------------CcEEEEEe
Q ss_pred --CC-----CccccCCc-cceeccccCCCC--ceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCCCCCC
Q 004456 165 --DG-----TAKDFGTP-AVYTAVEPSPDQ--KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (752)
Q Consensus 165 --~G-----~~~~l~~~-~~~~~~~~SpDG--k~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (752)
.+ +..+-..+ +.+....|||-| ..|+|+..-. .+.+.|+......++...+..
T Consensus 233 R~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs-------------~~hv~D~R~~~~~q~I~i~~d---- 295 (344)
T KOG4532|consen 233 RNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFS-------------RVHVVDTRNYVNHQVIVIPDD---- 295 (344)
T ss_pred cccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcc-------------eEEEEEcccCceeeEEecCcc----
Q ss_pred cccCCcccc-ccceeeeeCCCceEEEEEeccCCCCccccCcc
Q 004456 235 VCYNSVREG-MRSISWRADKPSTLYWVEAQDRGDANVEVSPR 275 (752)
Q Consensus 235 ~~~~~~~~~-~~~~~wspDG~~~l~~~~~~~~~~~~~~~~~~ 275 (752)
.+-+.... +..-.|+.++.. ++..+...+.........|
T Consensus 296 -~~~~~~tq~ifgt~f~~~n~s-~~v~~e~~~ae~ni~srsR 335 (344)
T KOG4532|consen 296 -VERKHNTQHIFGTNFNNENES-NDVKNELQGAEYNILSRSR 335 (344)
T ss_pred -ccccccccccccccccCCCcc-cccccchhhheeeccccce
No 498
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.70 E-value=19 Score=37.13 Aligned_cols=45 Identities=11% Similarity=0.040 Sum_probs=29.2
Q ss_pred ceEEEEEcccCcceecc--CC--------CCccccccccceEEecCCcEEEEEec
Q 004456 62 LRVWIADAETGEAKPLF--ES--------PDICLNAVFGSFVWVNNSTLLIFTIP 106 (752)
Q Consensus 62 ~~l~v~~~~~g~~~~lt--~~--------~~~~~~~~~~~~~wspdg~~l~~~~~ 106 (752)
..|+.++.+|...+++. .. .....+.++..++++|||+.|+....
T Consensus 112 p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 112 PRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred CEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 89999998854434431 10 11223446779999999997777644
No 499
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=90.45 E-value=4.8 Score=39.87 Aligned_cols=127 Identities=17% Similarity=0.171 Sum_probs=72.2
Q ss_pred cEEEEEccCC----CccccCCc--cceeccccCCCCceEEEEecccCccccccccCccccEEEEecCCceeEEecCCCCC
Q 004456 157 AQLVLGSLDG----TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA 230 (752)
Q Consensus 157 ~~i~~~~~~G----~~~~l~~~--~~~~~~~~SpDGk~l~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 230 (752)
..+.+|+++. ..+++..+ ..+..+.|+ .|+|+-.+.+. .|.+|+..+.+..+.......
T Consensus 297 rsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDR-------------TikvW~~st~efvRtl~gHkR 361 (499)
T KOG0281|consen 297 RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDR-------------TIKVWSTSTCEFVRTLNGHKR 361 (499)
T ss_pred ceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCc-------------eEEEEeccceeeehhhhcccc
Confidence 3566666632 23333333 667777774 56776665553 799999998876654443322
Q ss_pred CCCCcccCCccccccceee-eeCCCceEEEEEeccCCCCccccCccceEEeccCCCCCCCCCeEEeecccceeeeeeecC
Q 004456 231 EDIPVCYNSVREGMRSISW-RADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDD 309 (752)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~w-spDG~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~spD 309 (752)
+++- --.|+ +++.. +....|.++++. .|...+.|...+.-++.+.| |
T Consensus 362 ---------------GIAClQYr~r--lvVSG-----------SSDntIRlwdi~--~G~cLRvLeGHEeLvRciRF--d 409 (499)
T KOG0281|consen 362 ---------------GIACLQYRDR--LVVSG-----------SSDNTIRLWDIE--CGACLRVLEGHEELVRCIRF--D 409 (499)
T ss_pred ---------------cceehhccCe--EEEec-----------CCCceEEEEecc--ccHHHHHHhchHHhhhheee--c
Confidence 1111 11333 33332 133467888883 34445556666666666766 4
Q ss_pred CceEEEeeecccCceeEEEEcCCCC
Q 004456 310 SLALVNETWYKTSQTRTWLVCPGSK 334 (752)
Q Consensus 310 g~~l~~~~~~~~~~~~l~~~~~~~~ 334 (752)
.+.|+.++ ++ +.|.++|+..+
T Consensus 410 ~krIVSGa-YD---GkikvWdl~aa 430 (499)
T KOG0281|consen 410 NKRIVSGA-YD---GKIKVWDLQAA 430 (499)
T ss_pred Cceeeecc-cc---ceEEEEecccc
Confidence 67787766 33 35777777764
No 500
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=90.41 E-value=1.9 Score=34.19 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=32.4
Q ss_pred cccEEEEEcc-CCCccccCCc-cceeccccCCCCceEEEEeccc
Q 004456 155 TTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHR 196 (752)
Q Consensus 155 ~~~~i~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~~~~~ 196 (752)
..++|+.+|+ +++.+-+... ....+++.|||+.+|++.....
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~ 78 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGR 78 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGG
T ss_pred CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccC
Confidence 4589999999 6677777666 7888999999999999986553
Done!