BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004458
(752 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of
C2221 At 2.13a
pdb|4FWF|A Chain A, Complex Structure Of Lsd2/aof1/kdm1b With H3k4 Mimic
pdb|4FWJ|A Chain A, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
pdb|4FWJ|B Chain B, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
Length = 796
Score = 306 bits (784), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 190/524 (36%), Positives = 283/524 (54%), Gaps = 33/524 (6%)
Query: 95 YIVVRNHILARWRGNVRVWLT----------KGQIKETVSSEYEHLMNSAYDFLLYNGYI 144
Y+ +RN ILA W N + LT +G ++ E E ++ F+ G I
Sbjct: 281 YLALRNLILALWYTNCKEALTPQKCIPHIIVRGLVRIRCVQEVERILY----FMTRKGLI 336
Query: 145 NFGVAPSFTAN---MPEEANEGSVIIVXXXXXXXXXXKQLMSFGFKVVVLEGRSRPGGRV 201
N GV S A+ +P++ + SVII+ +QL +FG KV VLE + R GGRV
Sbjct: 337 NTGVL-SVGADQYLLPKDYHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRV 395
Query: 202 YTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLSIPLHKVRDNCPLYKPDGAPVNKE 261
+ K K V G ++ G NP+ ++ QL I +HK + C L + G +
Sbjct: 396 WDDKSFKG---VTVGRGAQIVNGCINNPVALMCEQLGISMHKFGERCDLIQEGGRITDPT 452
Query: 262 IDSKVEFIFNKLLDKVMELRKIKGGFANDVSLGSVLETLRQLY----AVARSTEERELLD 317
ID +++F FN LLD V E RK K DV LG +E + + + + S E ++L
Sbjct: 453 IDKRMDFHFNALLDVVSEWRKDKTQL-QDVPLGEKIEEIYKAFIKESGIQFSELEGQVLQ 511
Query: 318 WHLANLEYANAGCLSDLSATYWDQDDPY-EMGGDHCFLAGGNWRLIKALCEGVPIFYEKT 376
+HL+NLEYA L +SA WD ++ + + GDH L G +I+ L EG+ I +
Sbjct: 512 FHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKLAEGLDIQLKSP 571
Query: 377 VNTIKYGNEGVEVIAGDQM-FQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFG 435
V I Y + V+V D + A VL TVPL +L++ I+F P L ++K+ AI+ LG G
Sbjct: 572 VQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAG 631
Query: 436 LLNKVAMVFPYVFWGEEL---DTFGCLNEQSSKRGEFFLFYGYHTVSGGPVLNALVAGEA 492
++ K+A+ FPY FW ++ D FG + +SKRG F +FY VL +++AGEA
Sbjct: 632 IIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEA 691
Query: 493 AKTFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDPFTHGSYSHVRVRSS 552
+ ++D +L + + LR ++ K +VPDP + TRW +DP+ +YS V+ S
Sbjct: 692 VASVRTLDDKQVLQQCMATLRELF--KEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGS 749
Query: 553 GSDYDILAESVGSRLFFAGEATTRQYPATMHGAYLSGLREASRI 596
G YDI+AE + +FFAGEAT R +P T+ GAYLSG+REAS+I
Sbjct: 750 GEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKI 793
>pdb|4GUR|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P21
pdb|4GUS|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group
P3221
pdb|4GUT|A Chain A, Crystal Structure Of Lsd2-npac
pdb|4GUU|A Chain A, Crystal Structure Of Lsd2-npac With Tranylcypromine
pdb|4GU0|A Chain A, Crystal Structure Of Lsd2 With H3
pdb|4GU0|B Chain B, Crystal Structure Of Lsd2 With H3
pdb|4GU0|C Chain C, Crystal Structure Of Lsd2 With H3
pdb|4GU0|D Chain D, Crystal Structure Of Lsd2 With H3
pdb|4HSU|A Chain A, Crystal Structure Of Lsd2-npac With H3(1-26)in Space Group
P21
Length = 776
Score = 306 bits (784), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 190/524 (36%), Positives = 283/524 (54%), Gaps = 33/524 (6%)
Query: 95 YIVVRNHILARWRGNVRVWLT----------KGQIKETVSSEYEHLMNSAYDFLLYNGYI 144
Y+ +RN ILA W N + LT +G ++ E E ++ F+ G I
Sbjct: 261 YLALRNLILALWYTNCKEALTPQKCIPHIIVRGLVRIRCVQEVERILY----FMTRKGLI 316
Query: 145 NFGVAPSFTAN---MPEEANEGSVIIVXXXXXXXXXXKQLMSFGFKVVVLEGRSRPGGRV 201
N GV S A+ +P++ + SVII+ +QL +FG KV VLE + R GGRV
Sbjct: 317 NTGVL-SVGADQYLLPKDYHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRV 375
Query: 202 YTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLSIPLHKVRDNCPLYKPDGAPVNKE 261
+ K K V G ++ G NP+ ++ QL I +HK + C L + G +
Sbjct: 376 WDDKSFKG---VTVGRGAQIVNGCINNPVALMCEQLGISMHKFGERCDLIQEGGRITDPT 432
Query: 262 IDSKVEFIFNKLLDKVMELRKIKGGFANDVSLGSVLETLRQLY----AVARSTEERELLD 317
ID +++F FN LLD V E RK K DV LG +E + + + + S E ++L
Sbjct: 433 IDKRMDFHFNALLDVVSEWRKDKTQL-QDVPLGEKIEEIYKAFIKESGIQFSELEGQVLQ 491
Query: 318 WHLANLEYANAGCLSDLSATYWDQDDPY-EMGGDHCFLAGGNWRLIKALCEGVPIFYEKT 376
+HL+NLEYA L +SA WD ++ + + GDH L G +I+ L EG+ I +
Sbjct: 492 FHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKLAEGLDIQLKSP 551
Query: 377 VNTIKYGNEGVEVIAGDQM-FQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFG 435
V I Y + V+V D + A VL TVPL +L++ I+F P L ++K+ AI+ LG G
Sbjct: 552 VQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAG 611
Query: 436 LLNKVAMVFPYVFWGEEL---DTFGCLNEQSSKRGEFFLFYGYHTVSGGPVLNALVAGEA 492
++ K+A+ FPY FW ++ D FG + +SKRG F +FY VL +++AGEA
Sbjct: 612 IIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEA 671
Query: 493 AKTFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDPFTHGSYSHVRVRSS 552
+ ++D +L + + LR ++ K +VPDP + TRW +DP+ +YS V+ S
Sbjct: 672 VASVRTLDDKQVLQQCMATLRELF--KEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGS 729
Query: 553 GSDYDILAESVGSRLFFAGEATTRQYPATMHGAYLSGLREASRI 596
G YDI+AE + +FFAGEAT R +P T+ GAYLSG+REAS+I
Sbjct: 730 GEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKI 773
>pdb|4GU1|A Chain A, Crystal Structure Of Lsd2
pdb|4GU1|B Chain B, Crystal Structure Of Lsd2
Length = 784
Score = 306 bits (783), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 190/524 (36%), Positives = 283/524 (54%), Gaps = 33/524 (6%)
Query: 95 YIVVRNHILARWRGNVRVWLT----------KGQIKETVSSEYEHLMNSAYDFLLYNGYI 144
Y+ +RN ILA W N + LT +G ++ E E ++ F+ G I
Sbjct: 269 YLALRNLILALWYTNCKEALTPQKCIPHIIVRGLVRIRCVQEVERILY----FMTRKGLI 324
Query: 145 NFGVAPSFTAN---MPEEANEGSVIIVXXXXXXXXXXKQLMSFGFKVVVLEGRSRPGGRV 201
N GV S A+ +P++ + SVII+ +QL +FG KV VLE + R GGRV
Sbjct: 325 NTGVL-SVGADQYLLPKDYHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRV 383
Query: 202 YTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLSIPLHKVRDNCPLYKPDGAPVNKE 261
+ K K V G ++ G NP+ ++ QL I +HK + C L + G +
Sbjct: 384 WDDKSFKG---VTVGRGAQIVNGCINNPVALMCEQLGISMHKFGERCDLIQEGGRITDPT 440
Query: 262 IDSKVEFIFNKLLDKVMELRKIKGGFANDVSLGSVLETLRQLY----AVARSTEERELLD 317
ID +++F FN LLD V E RK K DV LG +E + + + + S E ++L
Sbjct: 441 IDKRMDFHFNALLDVVSEWRKDKTQL-QDVPLGEKIEEIYKAFIKESGIQFSELEGQVLQ 499
Query: 318 WHLANLEYANAGCLSDLSATYWDQDDPY-EMGGDHCFLAGGNWRLIKALCEGVPIFYEKT 376
+HL+NLEYA L +SA WD ++ + + GDH L G +I+ L EG+ I +
Sbjct: 500 FHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKLAEGLDIQLKSP 559
Query: 377 VNTIKYGNEGVEVIAGDQM-FQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFG 435
V I Y + V+V D + A VL TVPL +L++ I+F P L ++K+ AI+ LG G
Sbjct: 560 VQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAG 619
Query: 436 LLNKVAMVFPYVFWGEEL---DTFGCLNEQSSKRGEFFLFYGYHTVSGGPVLNALVAGEA 492
++ K+A+ FPY FW ++ D FG + +SKRG F +FY VL +++AGEA
Sbjct: 620 IIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEA 679
Query: 493 AKTFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDPFTHGSYSHVRVRSS 552
+ ++D +L + + LR ++ K +VPDP + TRW +DP+ +YS V+ S
Sbjct: 680 VASVRTLDDKQVLQQCMATLRELF--KEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGS 737
Query: 553 GSDYDILAESVGSRLFFAGEATTRQYPATMHGAYLSGLREASRI 596
G YDI+AE + +FFAGEAT R +P T+ GAYLSG+REAS+I
Sbjct: 738 GEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKI 781
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 263 bits (671), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 142/329 (43%), Positives = 198/329 (60%), Gaps = 31/329 (9%)
Query: 294 GSVLETLRQLYA-----VARSTEERELLDWHLANLEYANAGCLSDLSATYWDQDDPYEMG 348
G + E L++L A V S+ +R++LDWH ANLE+ANA LS LS +WDQDD +E
Sbjct: 380 GKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFT 439
Query: 349 GDHCFLAGGNWRLIKALCEGVPIFYEKTVNTIKYGNEGVEVIAGDQ-------MFQADMV 401
G H + G + AL EG+ I V ++Y G EVIA + +++ D V
Sbjct: 440 GSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAV 499
Query: 402 LCTVPLGVLKEK--TIKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFWGEELDTFGCL 459
LCT+PLGVLK++ ++F P LP+ K +A+ R+GFG LNKV + F VFW ++ FG +
Sbjct: 500 LCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHV 559
Query: 460 NEQSSKRGEFFLFYGYHTVSGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPK 519
++ RGE FLF+ + P+L ALVAGEAA E++ ++ R L +L+GI+
Sbjct: 560 GSTTASRGELFLFWNLYK---APILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS 616
Query: 520 GIDVPDPLQTICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVG------------SRL 567
VP P +T+ +RW +DP+ GSYS+V SSG+DYD++A+ + RL
Sbjct: 617 A--VPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRL 674
Query: 568 FFAGEATTRQYPATMHGAYLSGLREASRI 596
FFAGE T R YPAT+HGA LSGLREA RI
Sbjct: 675 FFAGEHTIRNYPATVHGALLSGLREAGRI 703
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 128/248 (51%), Gaps = 15/248 (6%)
Query: 64 AFSLGFPIDALLEEEIRAGVVGVLGGKEQND--YIVVRNHILARWRGNVRVWLTKGQIKE 121
AF P D + +E A ++ G +Q ++ +RN L W N ++ LT +
Sbjct: 56 AFQSRLPHDRMTSQEA-ACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQ 114
Query: 122 TVSSEYEH---LMNSAYDFLLYNGYINFGVAPSFTANMPEEANEGSVIIVXXXXXXXXXX 178
+ + Y L++ + +L +G INFG+ +P + G VII+
Sbjct: 115 QLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKP-LPTKKT-GKVIIIGSGVSGLAAA 172
Query: 179 KQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLS 238
+QL SFG V +LE R R GGRV T +KG + A DLG V+TG+ NP+ V+++Q++
Sbjct: 173 RQLQSFGMDVTLLEARDRVGGRVAT---FRKGNYVA-DLGAMVVTGLGGNPMAVVSKQVN 228
Query: 239 IPLHKVRDNCPLYKPDGAPVNKEIDSKVEFIFNKLLDKVMEL-RKIKGGFAND--VSLGS 295
+ L K++ CPLY+ +G V KE D VE FN+LL+ L ++ N+ VSLG
Sbjct: 229 MELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQ 288
Query: 296 VLETLRQL 303
LE + QL
Sbjct: 289 ALEVVIQL 296
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 263 bits (671), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 142/329 (43%), Positives = 198/329 (60%), Gaps = 31/329 (9%)
Query: 294 GSVLETLRQLYA-----VARSTEERELLDWHLANLEYANAGCLSDLSATYWDQDDPYEMG 348
G + E L++L A V S+ +R++LDWH ANLE+ANA LS LS +WDQDD +E
Sbjct: 384 GKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFT 443
Query: 349 GDHCFLAGGNWRLIKALCEGVPIFYEKTVNTIKYGNEGVEVIAGDQ-------MFQADMV 401
G H + G + AL EG+ I V ++Y G EVIA + +++ D V
Sbjct: 444 GSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAV 503
Query: 402 LCTVPLGVLKEK--TIKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFWGEELDTFGCL 459
LCT+PLGVLK++ ++F P LP+ K +A+ R+GFG LNKV + F VFW ++ FG +
Sbjct: 504 LCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHV 563
Query: 460 NEQSSKRGEFFLFYGYHTVSGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPK 519
++ RGE FLF+ + P+L ALVAGEAA E++ ++ R L +L+GI+
Sbjct: 564 GSTTASRGELFLFWNLYK---APILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS 620
Query: 520 GIDVPDPLQTICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVG------------SRL 567
VP P +T+ +RW +DP+ GSYS+V SSG+DYD++A+ + RL
Sbjct: 621 A--VPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRL 678
Query: 568 FFAGEATTRQYPATMHGAYLSGLREASRI 596
FFAGE T R YPAT+HGA LSGLREA RI
Sbjct: 679 FFAGEHTIRNYPATVHGALLSGLREAGRI 707
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 128/252 (50%), Gaps = 19/252 (7%)
Query: 64 AFSLGFPIDALLEEEIRAGVVGVLGGKEQND--YIVVRNHILARWRGNVRVWLTKGQIKE 121
AF P D + +E A ++ G +Q ++ +RN L W N ++ LT +
Sbjct: 56 AFQSRLPHDRMTSQEA-ACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQ 114
Query: 122 TVSSEYEH---LMNSAYDFLLYNGYINFGVAPSFTANMPEEANEGSVIIVXXXXXXXXXX 178
+ + Y L++ + +L +G INFG+ +P + G VII+
Sbjct: 115 QLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKP-LPTKKT-GKVIIIGSGVSGLAAA 172
Query: 179 KQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLS 238
+QL SFG V +LE R R GGRV T +KG + A DLG V+TG+ NP+ V+++Q++
Sbjct: 173 RQLQSFGMDVTLLEARDRVGGRVAT---FRKGNYVA-DLGAMVVTGLGGNPMAVVSKQVN 228
Query: 239 IPLHKVRDNCPLYKPDG----APVNKEIDSKVEFIFNKLLDKVMEL-RKIKGGFAND--V 291
+ L K++ CPLY+ +G V KE D VE FN+LL+ L ++ N+ V
Sbjct: 229 MELAKIKQKCPLYEANGQADTVKVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPV 288
Query: 292 SLGSVLETLRQL 303
SLG LE + QL
Sbjct: 289 SLGQALEVVIQL 300
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 262 bits (670), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 142/329 (43%), Positives = 198/329 (60%), Gaps = 31/329 (9%)
Query: 294 GSVLETLRQLYA-----VARSTEERELLDWHLANLEYANAGCLSDLSATYWDQDDPYEMG 348
G + E L++L A V S+ +R++LDWH ANLE+ANA LS LS +WDQDD +E
Sbjct: 332 GKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFT 391
Query: 349 GDHCFLAGGNWRLIKALCEGVPIFYEKTVNTIKYGNEGVEVIAGDQ-------MFQADMV 401
G H + G + AL EG+ I V ++Y G EVIA + +++ D V
Sbjct: 392 GSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAV 451
Query: 402 LCTVPLGVLKEK--TIKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFWGEELDTFGCL 459
LCT+PLGVLK++ ++F P LP+ K +A+ R+GFG LNKV + F VFW ++ FG +
Sbjct: 452 LCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHV 511
Query: 460 NEQSSKRGEFFLFYGYHTVSGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPK 519
++ RGE FLF+ + P+L ALVAGEAA E++ ++ R L +L+GI+
Sbjct: 512 GSTTASRGELFLFWNLYK---APILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS 568
Query: 520 GIDVPDPLQTICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVG------------SRL 567
VP P +T+ +RW +DP+ GSYS+V SSG+DYD++A+ + RL
Sbjct: 569 A--VPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRL 626
Query: 568 FFAGEATTRQYPATMHGAYLSGLREASRI 596
FFAGE T R YPAT+HGA LSGLREA RI
Sbjct: 627 FFAGEHTIRNYPATVHGALLSGLREAGRI 655
Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 128/248 (51%), Gaps = 15/248 (6%)
Query: 64 AFSLGFPIDALLEEEIRAGVVGVLGGKEQND--YIVVRNHILARWRGNVRVWLTKGQIKE 121
AF P D + +E A ++ G +Q ++ +RN L W N ++ LT +
Sbjct: 8 AFQSRLPHDRMTSQEA-ACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQ 66
Query: 122 TVSSEYEH---LMNSAYDFLLYNGYINFGVAPSFTANMPEEANEGSVIIVXXXXXXXXXX 178
+ + Y L++ + +L +G INFG+ +P + G VII+
Sbjct: 67 QLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKP-LPTKKT-GKVIIIGSGVSGLAAA 124
Query: 179 KQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLS 238
+QL SFG V +LE R R GGRV T +KG + A DLG V+TG+ NP+ V+++Q++
Sbjct: 125 RQLQSFGMDVTLLEARDRVGGRVAT---FRKGNYVA-DLGAMVVTGLGGNPMAVVSKQVN 180
Query: 239 IPLHKVRDNCPLYKPDGAPVNKEIDSKVEFIFNKLLDKVMEL-RKIKGGFAND--VSLGS 295
+ L K++ CPLY+ +G V KE D VE FN+LL+ L ++ N+ VSLG
Sbjct: 181 MELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQ 240
Query: 296 VLETLRQL 303
LE + QL
Sbjct: 241 ALEVVIQL 248
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 262 bits (670), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 142/329 (43%), Positives = 198/329 (60%), Gaps = 31/329 (9%)
Query: 294 GSVLETLRQLYA-----VARSTEERELLDWHLANLEYANAGCLSDLSATYWDQDDPYEMG 348
G + E L++L A V S+ +R++LDWH ANLE+ANA LS LS +WDQDD +E
Sbjct: 331 GKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFT 390
Query: 349 GDHCFLAGGNWRLIKALCEGVPIFYEKTVNTIKYGNEGVEVIAGDQ-------MFQADMV 401
G H + G + AL EG+ I V ++Y G EVIA + +++ D V
Sbjct: 391 GSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAV 450
Query: 402 LCTVPLGVLKEK--TIKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFWGEELDTFGCL 459
LCT+PLGVLK++ ++F P LP+ K +A+ R+GFG LNKV + F VFW ++ FG +
Sbjct: 451 LCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHV 510
Query: 460 NEQSSKRGEFFLFYGYHTVSGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPK 519
++ RGE FLF+ + P+L ALVAGEAA E++ ++ R L +L+GI+
Sbjct: 511 GSTTASRGELFLFWNLYK---APILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS 567
Query: 520 GIDVPDPLQTICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVG------------SRL 567
VP P +T+ +RW +DP+ GSYS+V SSG+DYD++A+ + RL
Sbjct: 568 A--VPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRL 625
Query: 568 FFAGEATTRQYPATMHGAYLSGLREASRI 596
FFAGE T R YPAT+HGA LSGLREA RI
Sbjct: 626 FFAGEHTIRNYPATVHGALLSGLREAGRI 654
Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 128/248 (51%), Gaps = 15/248 (6%)
Query: 64 AFSLGFPIDALLEEEIRAGVVGVLGGKEQND--YIVVRNHILARWRGNVRVWLTKGQIKE 121
AF P D + +E A ++ G +Q ++ +RN L W N ++ LT +
Sbjct: 7 AFQSRLPHDRMTSQEA-ACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQ 65
Query: 122 TVSSEYEH---LMNSAYDFLLYNGYINFGVAPSFTANMPEEANEGSVIIVXXXXXXXXXX 178
+ + Y L++ + +L +G INFG+ +P + G VII+
Sbjct: 66 QLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKP-LPTKKT-GKVIIIGSGVSGLAAA 123
Query: 179 KQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLS 238
+QL SFG V +LE R R GGRV T +KG + A DLG V+TG+ NP+ V+++Q++
Sbjct: 124 RQLQSFGMDVTLLEARDRVGGRVAT---FRKGNYVA-DLGAMVVTGLGGNPMAVVSKQVN 179
Query: 239 IPLHKVRDNCPLYKPDGAPVNKEIDSKVEFIFNKLLDKVMEL-RKIKGGFAND--VSLGS 295
+ L K++ CPLY+ +G V KE D VE FN+LL+ L ++ N+ VSLG
Sbjct: 180 MELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQ 239
Query: 296 VLETLRQL 303
LE + QL
Sbjct: 240 ALEVVIQL 247
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 262 bits (670), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 142/329 (43%), Positives = 198/329 (60%), Gaps = 31/329 (9%)
Query: 294 GSVLETLRQLYA-----VARSTEERELLDWHLANLEYANAGCLSDLSATYWDQDDPYEMG 348
G + E L++L A V S+ +R++LDWH ANLE+ANA LS LS +WDQDD +E
Sbjct: 331 GKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFT 390
Query: 349 GDHCFLAGGNWRLIKALCEGVPIFYEKTVNTIKYGNEGVEVIAGDQ-------MFQADMV 401
G H + G + AL EG+ I V ++Y G EVIA + +++ D V
Sbjct: 391 GSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAV 450
Query: 402 LCTVPLGVLKEK--TIKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFWGEELDTFGCL 459
LCT+PLGVLK++ ++F P LP+ K +A+ R+GFG LNKV + F VFW ++ FG +
Sbjct: 451 LCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHV 510
Query: 460 NEQSSKRGEFFLFYGYHTVSGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPK 519
++ RGE FLF+ + P+L ALVAGEAA E++ ++ R L +L+GI+
Sbjct: 511 GSTTASRGELFLFWNLYK---APILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS 567
Query: 520 GIDVPDPLQTICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVG------------SRL 567
VP P +T+ +RW +DP+ GSYS+V SSG+DYD++A+ + RL
Sbjct: 568 A--VPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRL 625
Query: 568 FFAGEATTRQYPATMHGAYLSGLREASRI 596
FFAGE T R YPAT+HGA LSGLREA RI
Sbjct: 626 FFAGEHTIRNYPATVHGALLSGLREAGRI 654
Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 128/248 (51%), Gaps = 15/248 (6%)
Query: 64 AFSLGFPIDALLEEEIRAGVVGVLGGKEQND--YIVVRNHILARWRGNVRVWLTKGQIKE 121
AF P D + +E A ++ G +Q ++ +RN L W N ++ LT +
Sbjct: 7 AFQSRLPHDRMTSQEA-ACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQ 65
Query: 122 TVSSEYEH---LMNSAYDFLLYNGYINFGVAPSFTANMPEEANEGSVIIVXXXXXXXXXX 178
+ + Y L++ + +L +G INFG+ +P + G VII+
Sbjct: 66 QLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKP-LPTKKT-GKVIIIGSGVSGLAAA 123
Query: 179 KQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLS 238
+QL SFG V +LE R R GGRV T +KG + A DLG V+TG+ NP+ V+++Q++
Sbjct: 124 RQLQSFGMDVTLLEARDRVGGRVAT---FRKGNYVA-DLGAMVVTGLGGNPMAVVSKQVN 179
Query: 239 IPLHKVRDNCPLYKPDGAPVNKEIDSKVEFIFNKLLDKVMEL-RKIKGGFAND--VSLGS 295
+ L K++ CPLY+ +G V KE D VE FN+LL+ L ++ N+ VSLG
Sbjct: 180 MELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQ 239
Query: 296 VLETLRQL 303
LE + QL
Sbjct: 240 ALEVVIQL 247
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 262 bits (670), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 142/329 (43%), Positives = 198/329 (60%), Gaps = 31/329 (9%)
Query: 294 GSVLETLRQLYA-----VARSTEERELLDWHLANLEYANAGCLSDLSATYWDQDDPYEMG 348
G + E L++L A V S+ +R++LDWH ANLE+ANA LS LS +WDQDD +E
Sbjct: 331 GKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFT 390
Query: 349 GDHCFLAGGNWRLIKALCEGVPIFYEKTVNTIKYGNEGVEVIAGDQ-------MFQADMV 401
G H + G + AL EG+ I V ++Y G EVIA + +++ D V
Sbjct: 391 GSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAV 450
Query: 402 LCTVPLGVLKEK--TIKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFWGEELDTFGCL 459
LCT+PLGVLK++ ++F P LP+ K +A+ R+GFG LNKV + F VFW ++ FG +
Sbjct: 451 LCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHV 510
Query: 460 NEQSSKRGEFFLFYGYHTVSGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPK 519
++ RGE FLF+ + P+L ALVAGEAA E++ ++ R L +L+GI+
Sbjct: 511 GSTTASRGELFLFWNLYK---APILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS 567
Query: 520 GIDVPDPLQTICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVG------------SRL 567
VP P +T+ +RW +DP+ GSYS+V SSG+DYD++A+ + RL
Sbjct: 568 A--VPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRL 625
Query: 568 FFAGEATTRQYPATMHGAYLSGLREASRI 596
FFAGE T R YPAT+HGA LSGLREA RI
Sbjct: 626 FFAGEHTIRNYPATVHGALLSGLREAGRI 654
Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 128/248 (51%), Gaps = 15/248 (6%)
Query: 64 AFSLGFPIDALLEEEIRAGVVGVLGGKEQND--YIVVRNHILARWRGNVRVWLTKGQIKE 121
AF P D + +E A ++ G +Q ++ +RN L W N ++ LT +
Sbjct: 7 AFQSRLPHDRMTSQEA-ACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQ 65
Query: 122 TVSSEYEH---LMNSAYDFLLYNGYINFGVAPSFTANMPEEANEGSVIIVXXXXXXXXXX 178
+ + Y L++ + +L +G INFG+ +P + G VII+
Sbjct: 66 QLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKP-LPTKKT-GKVIIIGSGVSGLAAA 123
Query: 179 KQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLS 238
+QL SFG V +LE R R GGRV T +KG + A DLG V+TG+ NP+ V+++Q++
Sbjct: 124 RQLQSFGMDVTLLEARDRVGGRVAT---FRKGNYVA-DLGAMVVTGLGGNPMAVVSKQVN 179
Query: 239 IPLHKVRDNCPLYKPDGAPVNKEIDSKVEFIFNKLLDKVMEL-RKIKGGFAND--VSLGS 295
+ L K++ CPLY+ +G V KE D VE FN+LL+ L ++ N+ VSLG
Sbjct: 180 MELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQ 239
Query: 296 VLETLRQL 303
LE + QL
Sbjct: 240 ALEVVIQL 247
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 262 bits (670), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 142/329 (43%), Positives = 198/329 (60%), Gaps = 31/329 (9%)
Query: 294 GSVLETLRQLYA-----VARSTEERELLDWHLANLEYANAGCLSDLSATYWDQDDPYEMG 348
G + E L++L A V S+ +R++LDWH ANLE+ANA LS LS +WDQDD +E
Sbjct: 331 GKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFT 390
Query: 349 GDHCFLAGGNWRLIKALCEGVPIFYEKTVNTIKYGNEGVEVIAGDQ-------MFQADMV 401
G H + G + AL EG+ I V ++Y G EVIA + +++ D V
Sbjct: 391 GSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVQYTASGCEVIAVNTRSTSQTFIYKCDAV 450
Query: 402 LCTVPLGVLKEK--TIKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFWGEELDTFGCL 459
LCT+PLGVLK++ ++F P LP+ K +A+ R+GFG LNKV + F VFW ++ FG +
Sbjct: 451 LCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHV 510
Query: 460 NEQSSKRGEFFLFYGYHTVSGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPK 519
++ RGE FLF+ + P+L ALVAGEAA E++ ++ R L +L+GI+
Sbjct: 511 GSTTASRGELFLFWNLYK---APILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS 567
Query: 520 GIDVPDPLQTICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVG------------SRL 567
VP P +T+ +RW +DP+ GSYS+V SSG+DYD++A+ + RL
Sbjct: 568 A--VPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRL 625
Query: 568 FFAGEATTRQYPATMHGAYLSGLREASRI 596
FFAGE T R YPAT+HGA LSGLREA RI
Sbjct: 626 FFAGEHTIRNYPATVHGALLSGLREAGRI 654
Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 128/248 (51%), Gaps = 15/248 (6%)
Query: 64 AFSLGFPIDALLEEEIRAGVVGVLGGKEQND--YIVVRNHILARWRGNVRVWLTKGQIKE 121
AF P D + +E A ++ G +Q ++ +RN L W N ++ LT +
Sbjct: 7 AFQSRLPHDRMTSQEA-ACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQ 65
Query: 122 TVSSEYEH---LMNSAYDFLLYNGYINFGVAPSFTANMPEEANEGSVIIVXXXXXXXXXX 178
+ + Y L++ + +L +G INFG+ +P + G VII+
Sbjct: 66 QLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKP-LPTKKT-GKVIIIGSGVSGLAAA 123
Query: 179 KQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLS 238
+QL SFG V +LE R R GGRV T +KG + A DLG V+TG+ NP+ V+++Q++
Sbjct: 124 RQLQSFGMDVTLLEARDRVGGRVAT---FRKGNYVA-DLGAMVVTGLGGNPMAVVSKQVN 179
Query: 239 IPLHKVRDNCPLYKPDGAPVNKEIDSKVEFIFNKLLDKVMEL-RKIKGGFAND--VSLGS 295
+ L K++ CPLY+ +G V KE D VE FN+LL+ L ++ N+ VSLG
Sbjct: 180 MELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQ 239
Query: 296 VLETLRQL 303
LE + QL
Sbjct: 240 ALEVVIQL 247
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 262 bits (669), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 142/329 (43%), Positives = 198/329 (60%), Gaps = 31/329 (9%)
Query: 294 GSVLETLRQLYA-----VARSTEERELLDWHLANLEYANAGCLSDLSATYWDQDDPYEMG 348
G + E L++L A V S+ +R++LDWH ANLE+ANA LS LS +WDQDD +E
Sbjct: 502 GKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFT 561
Query: 349 GDHCFLAGGNWRLIKALCEGVPIFYEKTVNTIKYGNEGVEVIAGDQ-------MFQADMV 401
G H + G + AL EG+ I V ++Y G EVIA + +++ D V
Sbjct: 562 GSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAV 621
Query: 402 LCTVPLGVLKEK--TIKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFWGEELDTFGCL 459
LCT+PLGVLK++ ++F P LP+ K +A+ R+GFG LNKV + F VFW ++ FG +
Sbjct: 622 LCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHV 681
Query: 460 NEQSSKRGEFFLFYGYHTVSGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPK 519
++ RGE FLF+ + P+L ALVAGEAA E++ ++ R L +L+GI+
Sbjct: 682 GSTTASRGELFLFWNLYK---APILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS 738
Query: 520 GIDVPDPLQTICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVG------------SRL 567
VP P +T+ +RW +DP+ GSYS+V SSG+DYD++A+ + RL
Sbjct: 739 A--VPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRL 796
Query: 568 FFAGEATTRQYPATMHGAYLSGLREASRI 596
FFAGE T R YPAT+HGA LSGLREA RI
Sbjct: 797 FFAGEHTIRNYPATVHGALLSGLREAGRI 825
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 128/248 (51%), Gaps = 15/248 (6%)
Query: 64 AFSLGFPIDALLEEEIRAGVVGVLGGKEQND--YIVVRNHILARWRGNVRVWLTKGQIKE 121
AF P D + +E A ++ G +Q ++ +RN L W N ++ LT +
Sbjct: 178 AFQSRLPHDRMTSQEA-ACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQ 236
Query: 122 TVSSEYEH---LMNSAYDFLLYNGYINFGVAPSFTANMPEEANEGSVIIVXXXXXXXXXX 178
+ + Y L++ + +L +G INFG+ +P + G VII+
Sbjct: 237 QLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKP-LPTKKT-GKVIIIGSGVSGLAAA 294
Query: 179 KQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLS 238
+QL SFG V +LE R R GGRV T +KG + A DLG V+TG+ NP+ V+++Q++
Sbjct: 295 RQLQSFGMDVTLLEARDRVGGRVAT---FRKGNYVA-DLGAMVVTGLGGNPMAVVSKQVN 350
Query: 239 IPLHKVRDNCPLYKPDGAPVNKEIDSKVEFIFNKLLDKVMEL-RKIKGGFAND--VSLGS 295
+ L K++ CPLY+ +G V KE D VE FN+LL+ L ++ N+ VSLG
Sbjct: 351 MELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQ 410
Query: 296 VLETLRQL 303
LE + QL
Sbjct: 411 ALEVVIQL 418
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 124/474 (26%), Positives = 210/474 (44%), Gaps = 58/474 (12%)
Query: 165 VIIVXXXXXXXXXXKQLMSFGF-KVVVLEGRSRPGGRVYTQKMGKKGEFAA--VDLGGSV 221
VI+V K+L G +++LE GGR++ K FA V+LG +
Sbjct: 7 VIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMH------KTNFAGINVELGANW 60
Query: 222 ITGIHA---NPLGVLARQLSIPLHKVRDNCP-----LYKPDGAPVNKE-IDSKVEFIFNK 272
+ G++ NP+ + ++ L R + +YK DG +++ + ++E
Sbjct: 61 VEGVNGGKMNPIWPIVNS-TLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIE----- 114
Query: 273 LLDKVMELRK-----IKGGFANDVSLGSVLETLRQLYAVARSTEERELLDWHLANLEYAN 327
L D V E+ + + +D+S+ + ++ L + +T ++D++ + E+A
Sbjct: 115 LADSVEEMGEKLSATLHASGRDDMSILA-MQRLNEHQPNGPATPVDMVVDYYKFDYEFAE 173
Query: 328 AGCLSDLS-----ATYWDQDDPYEMGGDH-------CFLAGGNWRLIKALCEGVP--IFY 373
++ L AT+ D D D +LAG + + V +
Sbjct: 174 PPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQL 233
Query: 374 EKTVNTIKYGNEGVEVIAGDQ-MFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRL 432
K V IKY GV V D ++ AD V+ + LGVL+ I+F+P+LP KV AI +
Sbjct: 234 NKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQF 293
Query: 433 GFGLLNKVAMVFPYVFW----GEELDTFGCLNEQSSKRGEFFLFYGYH-TVSGGPVLNAL 487
+ K+ + FP FW G E + SS+RG + ++ + VL
Sbjct: 294 DMAVYTKIFLKFPRKFWPEGKGREFFLYA-----SSRRGYYGVWQEFEKQYPDANVLLVT 348
Query: 488 VAGEAAKTFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDPFTHGSYSHV 547
V E ++ E ++ VLR ++ G DVPD + RW SD F G++S+
Sbjct: 349 VTDEESRRIEQQSDEQTKAEIMQVLRKMF--PGKDVPDATDILVPRWWSDRFYKGTFSNW 406
Query: 548 RVRSSGSDYDILAESVGSRLFFAGEATTRQYPATMHGAYLSGLREASRILRATR 601
V + +YD L VG R++F GE T+ Y +HGAYLSG+ A ++ +
Sbjct: 407 PVGVNRYEYDQLRAPVG-RVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQ 459
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 123/474 (25%), Positives = 209/474 (44%), Gaps = 58/474 (12%)
Query: 165 VIIVXXXXXXXXXXKQLMSFGF-KVVVLEGRSRPGGRVYTQKMGKKGEFAA--VDLGGSV 221
VI+V K+L G +++LE GGR++ K FA V+LG +
Sbjct: 7 VIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMH------KTNFAGINVELGANW 60
Query: 222 ITGIHA---NPLGVLARQLSIPLHKVRDNCP-----LYKPDGAPVNKE-IDSKVEFIFNK 272
+ G++ NP+ + ++ L R + +YK DG +++ + ++E
Sbjct: 61 VEGVNGGKMNPIWPIVNS-TLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIE----- 114
Query: 273 LLDKVMELRK-----IKGGFANDVSLGSVLETLRQLYAVARSTEERELLDWHLANLEYAN 327
L D V E+ + + +D+S+ + ++ L + +T ++D++ + E+A
Sbjct: 115 LADSVEEMGEKLSATLHASGRDDMSILA-MQRLNEHQPNGPATPVDMVVDYYKFDYEFAE 173
Query: 328 AGCLSDLS-----ATYWDQDDPYEMGGDH-------CFLAGGNWRLIKALCEGVP--IFY 373
++ L AT+ D D D +LAG + + V +
Sbjct: 174 PPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQL 233
Query: 374 EKTVNTIKYGNEGVEVIAGDQ-MFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRL 432
K V IKY GV V D ++ AD V+ + LGVL+ I+F+P+LP KV AI +
Sbjct: 234 NKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQF 293
Query: 433 GFGLLNKVAMVFPYVFW----GEELDTFGCLNEQSSKRGEFFLFYGYH-TVSGGPVLNAL 487
+ + + FP FW G E + SS+RG + ++ + VL
Sbjct: 294 DMAVYTMIFLKFPRKFWPEGKGREFFLYA-----SSRRGYYGVWQEFEKQYPDANVLLVT 348
Query: 488 VAGEAAKTFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDPFTHGSYSHV 547
V E ++ E ++ VLR ++ G DVPD + RW SD F G++S+
Sbjct: 349 VTDEESRRIEQQSDEQTKAEIMQVLRKMF--PGKDVPDATDILVPRWWSDRFYKGTFSNW 406
Query: 548 RVRSSGSDYDILAESVGSRLFFAGEATTRQYPATMHGAYLSGLREASRILRATR 601
V + +YD L VG R++F GE T+ Y +HGAYLSG+ A ++ +
Sbjct: 407 PVGVNRYEYDQLRAPVG-RVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQ 459
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 119/491 (24%), Positives = 180/491 (36%), Gaps = 104/491 (21%)
Query: 188 VVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLSIPLHKVR-- 245
+VLE R R GGR+ T G +G D+G S NPL + QLS+ + R
Sbjct: 35 CLVLEARDRVGGRLQT-VTGYQGR--KYDIGASWHQDTLTNPLFLEEAQLSLNDGRTRFV 91
Query: 246 ---DNCPLYKPDGAPVNKEIDSKVEFIFNKLLDKVMELRKIKGGFANDVSLGSVL----- 297
DN + V+ + + +E + N++ K EL + +D S ++
Sbjct: 92 FDDDNFIYIDEERGRVDHDKELLLEIVDNEM-SKFAELEFHQHLGVSDCSFFQLVMKYLL 150
Query: 298 --------ETLRQLYAVARSTEERELLDWHL--ANLEYANAGCLSDLSATYWDQDDPYEM 347
+ +R L + R E LDW L A Y + + Y D
Sbjct: 151 QRRQFLTNDQIRYLPQLCRYLELWHGLDWKLLSAKDTYFGHQGRNAFALNY----DSVVQ 206
Query: 348 GGDHCFLAGGNWRLIKALCEGVPIFYEKTVNTIKYGNEGVEVIAGDQMFQADMVLCTVPL 407
F NW +K CE I E + N +G ++ AD V+ TVP
Sbjct: 207 RIAQSF--PQNW--LKLSCEVKSITREPSKNVTVNCEDGT-------VYNADYVIITVPQ 255
Query: 408 GVLK-----EKT----IKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFW--------- 449
VL EK I+F+P L A D++ FG L KV F W
Sbjct: 256 SVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVT 315
Query: 450 --------------GEELDTFGCLNEQSSKRGE----------FFL-------FYGYHTV 478
E LD + E+ + FF+ + +
Sbjct: 316 LANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSKSTGVASFMML 375
Query: 479 SGGPVLNAL--VAGEAAKTFESMDPSFLLHRVLNVL---------RGIYNPKGIDVPDPL 527
P+ N + + + + F P +L++++ L R I N + P
Sbjct: 376 MQAPLTNHIESIREDKERLFSFFQP--VLNKIMKCLDSEDVIDGMRPIENIANANKPVLR 433
Query: 528 QTICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVG--SRLFFAGEATTRQYPATMHGA 585
I + W DP++ G+YS D ++A S G SR+ FAGE T +GA
Sbjct: 434 NIIVSNWTRDPYSRGAYSACFPGDDPVDM-VVAMSNGQDSRIRFAGEHTIMDGAGCAYGA 492
Query: 586 YLSGLREASRI 596
+ SG REA+RI
Sbjct: 493 WESGRREATRI 503
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 118/489 (24%), Positives = 180/489 (36%), Gaps = 100/489 (20%)
Query: 188 VVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLSIPLHKVR-- 245
+VLE R R GGR+ T G +G D+G S NPL + QLS+ + R
Sbjct: 35 CLVLEARDRVGGRLQT-VTGYQGR--KYDIGASWHHDTLTNPLFLEEAQLSLNDGRTRFV 91
Query: 246 ---DNCPLYKPDGAPVNKEIDSKVEFIFNKLLDKVMELRKIKGGFANDVSLGSVL----- 297
DN + V+ + + +E + N++ K EL + +D S ++
Sbjct: 92 FDDDNFIYIDEERGRVDHDKELLLEIVDNEM-SKFAELEFHQHLGVSDCSFFQLVMKYLL 150
Query: 298 --------ETLRQLYAVARSTEERELLDWHLANLEYANAGCLSDLSATYWDQDDPYEMGG 349
+ +R L + R E LDW L + + G A + D
Sbjct: 151 QRRQFLTNDQIRYLPQLCRYLELWHGLDWKLLSAKDTYFG--HQGRAAFALNYDSVVQRI 208
Query: 350 DHCFLAGGNWRLIKALCEGVPIFYEKTVNTIKYGNEGVEVIAGDQMFQADMVLCTVPLGV 409
F NW +K CE I E + N +G ++ AD V+ TVP V
Sbjct: 209 AQSF--PQNW--LKLSCEVKSITREPSKNVTVNCEDGT-------VYNADYVIITVPQSV 257
Query: 410 LK-----EKT----IKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFW----------- 449
L EK I+F+P L A D++ FG L KV F W
Sbjct: 258 LNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLA 317
Query: 450 ------------GEELDTFGCLNEQSSKRGE----------FFL-------FYGYHTVSG 480
E LD + E+ + FF+ + +
Sbjct: 318 NSTNEFVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSKSTGVASFMMLMQ 377
Query: 481 GPVLNAL--VAGEAAKTFESMDPSFLLHRVLNVL---------RGIYNPKGIDVPDPLQT 529
P+ N + + + + F P +L++++ L R I N + P
Sbjct: 378 APLTNHIESIREDKERLFSFFQP--VLNKIMKCLDSEDVIDGMRPIENIANANKPVLRNI 435
Query: 530 ICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVG--SRLFFAGEATTRQYPATMHGAYL 587
I + W DP++ G+YS D ++A S G SR+ FAGE T +GA+
Sbjct: 436 IVSNWTRDPYSRGAYSACFPGDDPVDM-VVAMSNGQDSRIRFAGEHTIMDGAGCAYGAWE 494
Query: 588 SGLREASRI 596
SG REA+RI
Sbjct: 495 SGRREATRI 503
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
Length = 513
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 119/501 (23%), Positives = 185/501 (36%), Gaps = 104/501 (20%)
Query: 188 VVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLSIPLHKVR-- 245
+VLE R R GGR+ T G +G D+G S NPL + QLS+ + R
Sbjct: 35 CLVLEARDRVGGRLQT-VTGYQGR--KYDIGASWHHDTLTNPLFLEEAQLSLNDGRTRFV 91
Query: 246 ---DNCPLYKPDGAPVNKEIDSKVEFIFNKLLDKVMELRKIKGGFANDVSLGSVL----- 297
DN + V+ + + +E + N++ K EL + +D S ++
Sbjct: 92 FDDDNFIYIDEERGRVDHDKELLLEIVDNEM-SKFAELEFHQHLGVSDCSFFQLVMKYLL 150
Query: 298 --------ETLRQLYAVARSTEERELLDWHL--ANLEYANAGCLSDLSATYWDQDDPYEM 347
+ +R L + R E LDW L A Y + + Y D
Sbjct: 151 QRRQFLTNDQIRYLPQLCRYLELWHGLDWKLLSAKDTYFGHQGRNAFALNY----DSVVQ 206
Query: 348 GGDHCFLAGGNWRLIKALCEGVPIFYEKTVNTIKYGNEGVEVIAGDQMFQADMVLCTVPL 407
F NW +K CE I E + N +G ++ AD V+ TVP
Sbjct: 207 RIAQSF--PQNW--LKLSCEVKSITREPSKNVTVNCEDGT-------VYNADYVIITVPQ 255
Query: 408 GVLK-----EKT----IKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFW--------- 449
VL EK I+F+P L A D++ FG L KV F W
Sbjct: 256 SVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVT 315
Query: 450 --------------GEELDTFGCLNEQSSKRGE----------FFL-------FYGYHTV 478
E LD + E+ + FF+ + +
Sbjct: 316 LANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSKSTGVASFMML 375
Query: 479 SGGPVLNAL--VAGEAAKTFESMDPSFLLHRVLNVL---------RGIYNPKGIDVPDPL 527
P+ N + + + + F P +L++++ L R I N + P
Sbjct: 376 MQAPLTNHIESIREDKERLFSFFQP--VLNKIMKCLDSEDVIDGMRPIENIANANKPVLR 433
Query: 528 QTICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVG--SRLFFAGEATTRQYPATMHGA 585
I + W DP++ G+YS D ++A S G SR+ FAGE T +GA
Sbjct: 434 NIIVSNWTRDPYSRGAYSACFPGDDPVDM-VVAMSNGQDSRIRFAGEHTIMDGAGCAYGA 492
Query: 586 YLSGLREASRILRATRVQKYN 606
+ SG REA+RI +++ ++
Sbjct: 493 WESGRREATRISDLLKLEHHH 513
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 119/491 (24%), Positives = 180/491 (36%), Gaps = 104/491 (21%)
Query: 188 VVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLSIPLHKVR-- 245
+VLE R R GGR+ T G +G D+G S NPL + QLS+ + R
Sbjct: 35 CLVLEARDRVGGRLQT-VTGYQGR--KYDIGASWHHDTLTNPLFLEEAQLSLNDGRTRFV 91
Query: 246 ---DNCPLYKPDGAPVNKEIDSKVEFIFNKLLDKVMELRKIKGGFANDVSLGSVL----- 297
DN + V+ + + +E + N++ K EL + +D S ++
Sbjct: 92 FDDDNFIYIDEERGRVDHDKELLLEIVDNEM-SKFAELEFHQHLGVSDCSFFQLVMKYLL 150
Query: 298 --------ETLRQLYAVARSTEERELLDWHL--ANLEYANAGCLSDLSATYWDQDDPYEM 347
+ +R L + R E LDW L A Y + + Y D
Sbjct: 151 QRRQFLTNDQIRYLPQLCRYLELWHGLDWKLLSAKDTYFGHQGRNAFALNY----DSVVQ 206
Query: 348 GGDHCFLAGGNWRLIKALCEGVPIFYEKTVNTIKYGNEGVEVIAGDQMFQADMVLCTVPL 407
F NW +K CE I E + N +G ++ AD V+ TVP
Sbjct: 207 RIAQSF--PQNW--LKLSCEVKSITREPSKNVTVNCEDGT-------VYNADYVIITVPQ 255
Query: 408 GVLK-----EKT----IKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFW--------- 449
VL EK I+F+P L A D++ FG L KV F W
Sbjct: 256 SVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVT 315
Query: 450 --------------GEELDTFGCLNEQSSKRGE----------FFL-------FYGYHTV 478
E LD + E+ + FF+ + +
Sbjct: 316 LANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSKSTGVASFMML 375
Query: 479 SGGPVLNAL--VAGEAAKTFESMDPSFLLHRVLNVL---------RGIYNPKGIDVPDPL 527
P+ N + + + + F P +L++++ L R I N + P
Sbjct: 376 MQAPLTNHIESIREDKERLFSFFQP--VLNKIMKCLDSEDVIDGMRPIENIANANKPVLR 433
Query: 528 QTICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVG--SRLFFAGEATTRQYPATMHGA 585
I + W DP++ G+YS D ++A S G SR+ FAGE T +GA
Sbjct: 434 NIIVSNWTRDPYSRGAYSACFPGDDPVDM-VVAMSNGQDSRIRFAGEHTIMDGAGCAYGA 492
Query: 586 YLSGLREASRI 596
+ SG REA+RI
Sbjct: 493 WESGRREATRI 503
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
Length = 516
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 119/491 (24%), Positives = 177/491 (36%), Gaps = 104/491 (21%)
Query: 188 VVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLSIPLHKVR-- 245
+VLE R R GGR+ T G +G D+G S NPL + QLS+ + R
Sbjct: 35 CLVLEARDRVGGRLQT-VTGYQGR--KYDIGASWHHDTLTNPLFLEEAQLSLNDGRTRFV 91
Query: 246 ---DNCPLYKPDGAPVNKEIDSKVEFIFNKLLDKVMELRKIKGGFANDVSLGSVL----- 297
DN + V+ + + +E + N+ K EL + +D S ++
Sbjct: 92 FDDDNFIYIDEERGRVDHDKELLLEIVDNEX-SKFAELEFHQHLGVSDCSFFQLVXKYLL 150
Query: 298 --------ETLRQLYAVARSTEERELLDWHL--ANLEYANAGCLSDLSATYWDQDDPYEM 347
+ +R L + R E LDW L A Y + + Y D
Sbjct: 151 QRRQFLTNDQIRYLPQLCRYLELWHGLDWKLLSAKDTYFGHQGRNAFALNY----DSVVQ 206
Query: 348 GGDHCFLAGGNWRLIKALCEGVPIFYEKTVNTIKYGNEGVEVIAGDQMFQADMVLCTVPL 407
F NW +K CE I E + N +G ++ AD V+ TVP
Sbjct: 207 RIAQSF--PQNW--LKLSCEVKSITREPSKNVTVNCEDGT-------VYNADYVIITVPQ 255
Query: 408 GVLK-----EKT----IKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFW--------- 449
VL EK I+F+P L A D++ FG L KV F W
Sbjct: 256 SVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVT 315
Query: 450 --------------GEELDTFGCLNEQSSKRGE----------FFL-------FYGYHTV 478
E LD E+ + FF+ + +
Sbjct: 316 LANSTNEFVEIVRNAENLDELDSXLEREDSQKHTSVTCWSQPLFFVNLSKSTGVASFXXL 375
Query: 479 SGGPVLNAL--VAGEAAKTFESMDPSFLLHRVLNVL---------RGIYNPKGIDVPDPL 527
P+ N + + + + F P +L+++ L R I N + P
Sbjct: 376 XQAPLTNHIESIREDKERLFSFFQP--VLNKIXKCLDSEDVIDGXRPIENIANANKPVLR 433
Query: 528 QTICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVG--SRLFFAGEATTRQYPATMHGA 585
I + W DP++ G+YS D ++A S G SR+ FAGE T +GA
Sbjct: 434 NIIVSNWTRDPYSRGAYSACFPGDDPVDX-VVAXSNGQDSRIRFAGEHTIXDGAGCAYGA 492
Query: 586 YLSGLREASRI 596
+ SG REA+RI
Sbjct: 493 WESGRREATRI 503
>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
Length = 519
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 112/481 (23%), Positives = 169/481 (35%), Gaps = 108/481 (22%)
Query: 179 KQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLS 238
K L G VVVLE R R GGR YT + K VDLGGS + G N + LA++L
Sbjct: 20 KLLHDSGLNVVVLEARDRVGGRTYTLRNQK---VKYVDLGGSYV-GPTQNRILRLAKELG 75
Query: 239 IPLHKVRD-------------------------------------------NCPLYKPDG 255
+ +KV + P P
Sbjct: 76 LETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWK 135
Query: 256 APVNKEIDSKVEFIFNKLLDKVMELRKIKGGFANDVSLGSVLETLRQLYAVARSTEEREL 315
AP+ +E D+ +LLDK+ K L TL V T E
Sbjct: 136 APLAEEWDN---MTMKELLDKLCWTESAKQ-----------LATLFVNLCVTAETHEVSA 181
Query: 316 LDWHLANLEYANAGCLSDLSATYWDQDDPYEMGGDHCFLAGGNWRLIKALCE--GVPIFY 373
L W L ++ G + +++T GG GG+ ++ + + + G +
Sbjct: 182 L-WFLWYVK--QCGGTTRIAST--------TNGGQERKFVGGSGQVSERIMDLLGDRVKL 230
Query: 374 EKTVNTIKYGNEGVEV-IAGDQMFQADMVLCTVP--LGVLKEKTIKFEPELPQRKVAAID 430
E+ V I E V V +M++A V+ +P LG+ I F P LP + I
Sbjct: 231 ERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMIT 286
Query: 431 RLGFGLLNKVAMVFPYVFW------------GEELDTFGCLNEQSSKRGEFFLFYGYHTV 478
R+ G + K + + FW GEE L++ + G + G+
Sbjct: 287 RVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAATLDD-TKPEGNYAAIMGFILA 345
Query: 479 SGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDP 538
L L E K L +VL L + +P+ W +
Sbjct: 346 HKARKLARLTKEERLKKL-----CELYAKVLGSLEAL---------EPVHYEEKNWCEEQ 391
Query: 539 FTHGSYSHVRVRSSGSDYDILAESVGSRLFFAGEATTRQYPATMHGAYLSGLREASRILR 598
++ G Y+ + Y + R++FAG T + M GA +G R A IL
Sbjct: 392 YSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILH 451
Query: 599 A 599
A
Sbjct: 452 A 452
>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
pdb|2XFO|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
Length = 520
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 112/481 (23%), Positives = 169/481 (35%), Gaps = 108/481 (22%)
Query: 179 KQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLS 238
K L G VVVLE R R GGR YT + K VDLGGS + G N + LA++L
Sbjct: 21 KLLHDSGLNVVVLEARDRVGGRTYTLRNQK---VKYVDLGGSYV-GPTQNRILRLAKELG 76
Query: 239 IPLHKVRD-------------------------------------------NCPLYKPDG 255
+ +KV + P P
Sbjct: 77 LETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWK 136
Query: 256 APVNKEIDSKVEFIFNKLLDKVMELRKIKGGFANDVSLGSVLETLRQLYAVARSTEEREL 315
AP+ +E D+ +LLDK+ K L TL V T E
Sbjct: 137 APLAEEWDN---MTMKELLDKLCWTESAKQ-----------LATLFVNLCVTAETHEVSA 182
Query: 316 LDWHLANLEYANAGCLSDLSATYWDQDDPYEMGGDHCFLAGGNWRLIKALCE--GVPIFY 373
L W L ++ G + +++T GG GG+ ++ + + + G +
Sbjct: 183 L-WFLWYVK--QCGGTTRIAST--------TNGGQERKFVGGSGQVSERIMDLLGDRVKL 231
Query: 374 EKTVNTIKYGNEGVEV-IAGDQMFQADMVLCTVP--LGVLKEKTIKFEPELPQRKVAAID 430
E+ V I E V V +M++A V+ +P LG+ I F P LP + I
Sbjct: 232 ERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMIT 287
Query: 431 RLGFGLLNKVAMVFPYVFW------------GEELDTFGCLNEQSSKRGEFFLFYGYHTV 478
R+ G + K + + FW GEE L++ + G + G+
Sbjct: 288 RVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDD-TKPEGNYAAIMGFILA 346
Query: 479 SGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDP 538
L L E K L +VL L + +P+ W +
Sbjct: 347 HKARKLARLTKEERLKKL-----CELYAKVLGSLEAL---------EPVHYEEKNWCEEQ 392
Query: 539 FTHGSYSHVRVRSSGSDYDILAESVGSRLFFAGEATTRQYPATMHGAYLSGLREASRILR 598
++ G Y+ + Y + R++FAG T + M GA +G R A IL
Sbjct: 393 YSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILH 452
Query: 599 A 599
A
Sbjct: 453 A 453
>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine
pdb|2XFU|B Chain B, Human Monoamine Oxidase B With Tranylcypromine
Length = 519
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 113/481 (23%), Positives = 167/481 (34%), Gaps = 108/481 (22%)
Query: 179 KQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLS 238
K L G VVVLE R R GGR YT + K VDLGGS + G N + LA++L
Sbjct: 20 KLLHDSGLNVVVLEARDRVGGRTYTLRNQK---VKYVDLGGSYV-GPTQNRILRLAKELG 75
Query: 239 IPLHKVRD-------------------------------------------NCPLYKPDG 255
+ +KV + P P
Sbjct: 76 LETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWK 135
Query: 256 APVNKEIDSKVEFIFNKLLDKVMELRKIKGGFANDVSLGSVLETLRQLYAVARSTEEREL 315
AP+ +E D+ +LLDK+ K L TL V T E
Sbjct: 136 APLAEEWDN---MTMKELLDKLCWTESAKQ-----------LATLFVNLCVTAETHEVSA 181
Query: 316 LDWHLANLEYANAGCLSDLSATYWDQDDPYEMGGDHCFLAGGNWRLIKALCE--GVPIFY 373
L W L ++ G +S T GG GG+ ++ + + + G +
Sbjct: 182 L-WFLWYVKQC-GGTTRIISTT---------NGGQERKFVGGSGQVSERIMDLLGDRVKL 230
Query: 374 EKTVNTIKYGNEGVEV-IAGDQMFQADMVLCTVP--LGVLKEKTIKFEPELPQRKVAAID 430
E+ V I E V V +M++A V+ +P LG+ I F P LP + I
Sbjct: 231 ERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMIT 286
Query: 431 RLGFGLLNKVAMVFPYVFW------------GEELDTFGCLNEQSSKRGEFFLFYGYHTV 478
R+ G + K + + FW GEE L++ + G + G+
Sbjct: 287 RVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDD-TKPEGNYAAIMGFILA 345
Query: 479 SGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDP 538
L L E K L +VL L + +P+ W +
Sbjct: 346 HKARKLARLTKEERLKKL-----CELYAKVLGSLEAL---------EPVHYEEKNWCEEQ 391
Query: 539 FTHGSYSHVRVRSSGSDYDILAESVGSRLFFAGEATTRQYPATMHGAYLSGLREASRILR 598
++ G Y+ + Y + R++FAG T + M GA +G R A IL
Sbjct: 392 YSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILH 451
Query: 599 A 599
A
Sbjct: 452 A 452
>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C72|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 113/481 (23%), Positives = 167/481 (34%), Gaps = 108/481 (22%)
Query: 179 KQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLS 238
K L G VVVLE R R GGR YT + K VDLGGS + G N + LA++L
Sbjct: 21 KLLHDSGLNVVVLEARDRVGGRTYTLRNQK---VKYVDLGGSYV-GPTQNRILRLAKELG 76
Query: 239 IPLHKVRD-------------------------------------------NCPLYKPDG 255
+ +KV + P P
Sbjct: 77 LETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWK 136
Query: 256 APVNKEIDSKVEFIFNKLLDKVMELRKIKGGFANDVSLGSVLETLRQLYAVARSTEEREL 315
AP+ +E D+ +LLDK+ K L TL V T E
Sbjct: 137 APLAEEWDN---MTMKELLDKLCWTESAKQ-----------LATLFVNLCVTAETHEVSA 182
Query: 316 LDWHLANLEYANAGCLSDLSATYWDQDDPYEMGGDHCFLAGGNWRLIKALCE--GVPIFY 373
L W L ++ G +S T GG GG+ ++ + + + G +
Sbjct: 183 L-WFLWYVKQC-GGTTRIISTT---------NGGQERKFVGGSGQVSERIMDLLGDRVKL 231
Query: 374 EKTVNTIKYGNEGVEV-IAGDQMFQADMVLCTVP--LGVLKEKTIKFEPELPQRKVAAID 430
E+ V I E V V +M++A V+ +P LG+ I F P LP + I
Sbjct: 232 ERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMIT 287
Query: 431 RLGFGLLNKVAMVFPYVFW------------GEELDTFGCLNEQSSKRGEFFLFYGYHTV 478
R+ G + K + + FW GEE L++ + G + G+
Sbjct: 288 RVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDD-TKPEGNYAAIMGFILA 346
Query: 479 SGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDP 538
L L E K L +VL L + +P+ W +
Sbjct: 347 HKARKLARLTKEERLKKL-----CELYAKVLGSLEAL---------EPVHYEEKNWCEEQ 392
Query: 539 FTHGSYSHVRVRSSGSDYDILAESVGSRLFFAGEATTRQYPATMHGAYLSGLREASRILR 598
++ G Y+ + Y + R++FAG T + M GA +G R A IL
Sbjct: 393 YSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGHMEGAVEAGERAAREILH 452
Query: 599 A 599
A
Sbjct: 453 A 453
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
pdb|1OJ9|A Chain A, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJ9|B Chain B, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJA|A Chain A, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJA|B Chain B, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJC|A Chain A, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJC|B Chain B, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJD|A Chain A, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|B Chain B, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|C Chain C, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|D Chain D, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|E Chain E, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|F Chain F, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|G Chain G, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|H Chain H, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|I Chain I, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|L Chain L, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1S2Q|A Chain A, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Q|B Chain B, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Y|A Chain A, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S2Y|B Chain B, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S3B|A Chain A, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3B|B Chain B, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|A Chain A, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|B Chain B, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|2BK3|A Chain A, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BK3|B Chain B, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BYB|A Chain A, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2BYB|B Chain B, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2C64|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C64|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C65|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C65|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C66|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C66|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C67|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C67|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C70|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C70|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2V5Z|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V5Z|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V60|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V60|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V61|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2V61|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2VRL|A Chain A, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRL|B Chain B, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRM|A Chain A, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VRM|B Chain B, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VZ2|A Chain A, Human Mao B In Complex With Mofegiline
pdb|2VZ2|B Chain B, Human Mao B In Complex With Mofegiline
pdb|2XCG|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XCG|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFN|A Chain A, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFN|B Chain B, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFP|A Chain A, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFP|B Chain B, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|A Chain A, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|B Chain B, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|3PO7|A Chain A, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|3PO7|B Chain B, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|4A79|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A79|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A7A|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
pdb|4A7A|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
Length = 520
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 113/481 (23%), Positives = 167/481 (34%), Gaps = 108/481 (22%)
Query: 179 KQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLS 238
K L G VVVLE R R GGR YT + K VDLGGS + G N + LA++L
Sbjct: 21 KLLHDSGLNVVVLEARDRVGGRTYTLRNQK---VKYVDLGGSYV-GPTQNRILRLAKELG 76
Query: 239 IPLHKVRD-------------------------------------------NCPLYKPDG 255
+ +KV + P P
Sbjct: 77 LETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWK 136
Query: 256 APVNKEIDSKVEFIFNKLLDKVMELRKIKGGFANDVSLGSVLETLRQLYAVARSTEEREL 315
AP+ +E D+ +LLDK+ K L TL V T E
Sbjct: 137 APLAEEWDN---MTMKELLDKLCWTESAKQ-----------LATLFVNLCVTAETHEVSA 182
Query: 316 LDWHLANLEYANAGCLSDLSATYWDQDDPYEMGGDHCFLAGGNWRLIKALCE--GVPIFY 373
L W L ++ G +S T GG GG+ ++ + + + G +
Sbjct: 183 L-WFLWYVKQC-GGTTRIISTT---------NGGQERKFVGGSGQVSERIMDLLGDRVKL 231
Query: 374 EKTVNTIKYGNEGVEV-IAGDQMFQADMVLCTVP--LGVLKEKTIKFEPELPQRKVAAID 430
E+ V I E V V +M++A V+ +P LG+ I F P LP + I
Sbjct: 232 ERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMIT 287
Query: 431 RLGFGLLNKVAMVFPYVFW------------GEELDTFGCLNEQSSKRGEFFLFYGYHTV 478
R+ G + K + + FW GEE L++ + G + G+
Sbjct: 288 RVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDD-TKPEGNYAAIMGFILA 346
Query: 479 SGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDP 538
L L E K L +VL L + +P+ W +
Sbjct: 347 HKARKLARLTKEERLKKL-----CELYAKVLGSLEAL---------EPVHYEEKNWCEEQ 392
Query: 539 FTHGSYSHVRVRSSGSDYDILAESVGSRLFFAGEATTRQYPATMHGAYLSGLREASRILR 598
++ G Y+ + Y + R++FAG T + M GA +G R A IL
Sbjct: 393 YSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILH 452
Query: 599 A 599
A
Sbjct: 453 A 453
>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C75|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 113/481 (23%), Positives = 167/481 (34%), Gaps = 108/481 (22%)
Query: 179 KQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLS 238
K L G VVVLE R R GGR YT + K VDLGGS + G N + LA++L
Sbjct: 21 KLLHDSGLNVVVLEARDRVGGRTYTLRNQK---VKYVDLGGSYV-GPTQNRILRLAKELG 76
Query: 239 IPLHKVRD-------------------------------------------NCPLYKPDG 255
+ +KV + P P
Sbjct: 77 LETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWK 136
Query: 256 APVNKEIDSKVEFIFNKLLDKVMELRKIKGGFANDVSLGSVLETLRQLYAVARSTEEREL 315
AP+ +E D+ +LLDK+ K L TL V T E
Sbjct: 137 APLAEEWDN---MTMKELLDKLCWTESAKQ-----------LATLFVNLCVTAETHEVSA 182
Query: 316 LDWHLANLEYANAGCLSDLSATYWDQDDPYEMGGDHCFLAGGNWRLIKALCE--GVPIFY 373
L W L ++ G +S T GG GG+ ++ + + + G +
Sbjct: 183 L-WFLWYVKQC-GGTTRIISTT---------NGGQERKFVGGSGQVSERIMDLLGDRVKL 231
Query: 374 EKTVNTIKYGNEGVEV-IAGDQMFQADMVLCTVP--LGVLKEKTIKFEPELPQRKVAAID 430
E+ V I E V V +M++A V+ +P LG+ I F P LP + I
Sbjct: 232 ERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMIT 287
Query: 431 RLGFGLLNKVAMVFPYVFW------------GEELDTFGCLNEQSSKRGEFFLFYGYHTV 478
R+ G + K + + FW GEE L++ + G + G+
Sbjct: 288 RVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDD-TKPEGNYAAIMGFILA 346
Query: 479 SGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDP 538
L L E K L +VL L + +P+ W +
Sbjct: 347 HKARKLARLTKEERLKKL-----CELYAKVLGSLEAL---------EPVHYEEKNWCEEQ 392
Query: 539 FTHGSYSHVRVRSSGSDYDILAESVGSRLFFAGEATTRQYPATMHGAYLSGLREASRILR 598
++ G Y+ + Y + R++FAG T + M GA +G R A IL
Sbjct: 393 YSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGLMEGAVEAGERAAREILH 452
Query: 599 A 599
A
Sbjct: 453 A 453
>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C76|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 113/481 (23%), Positives = 167/481 (34%), Gaps = 108/481 (22%)
Query: 179 KQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLS 238
K L G VVVLE R R GGR YT + K VDLGGS + G N + LA++L
Sbjct: 21 KLLHDSGLNVVVLEARDRVGGRTYTLRNQK---VKYVDLGGSYV-GPTQNRILRLAKELG 76
Query: 239 IPLHKVRD-------------------------------------------NCPLYKPDG 255
+ +KV + P P
Sbjct: 77 LETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWK 136
Query: 256 APVNKEIDSKVEFIFNKLLDKVMELRKIKGGFANDVSLGSVLETLRQLYAVARSTEEREL 315
AP+ +E D+ +LLDK+ K L TL V T E
Sbjct: 137 APLAEEWDN---MTMKELLDKLCWTESAKQ-----------LATLFVNLCVTAETHEVSA 182
Query: 316 LDWHLANLEYANAGCLSDLSATYWDQDDPYEMGGDHCFLAGGNWRLIKALCE--GVPIFY 373
L W L ++ G +S T GG GG+ ++ + + + G +
Sbjct: 183 L-WFLWYVKQC-GGTTRIISTT---------NGGQERKFVGGSGQVSERIMDLLGDRVKL 231
Query: 374 EKTVNTIKYGNEGVEV-IAGDQMFQADMVLCTVP--LGVLKEKTIKFEPELPQRKVAAID 430
E+ V I E V V +M++A V+ +P LG+ I F P LP + I
Sbjct: 232 ERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMIT 287
Query: 431 RLGFGLLNKVAMVFPYVFW------------GEELDTFGCLNEQSSKRGEFFLFYGYHTV 478
R+ G + K + + FW GEE L++ + G + G+
Sbjct: 288 RVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDD-TKPEGNYAAIMGFILA 346
Query: 479 SGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDP 538
L L E K L +VL L + +P+ W +
Sbjct: 347 HKARKLARLTKEERLKKL-----CELYAKVLGSLEAL---------EPVHYEEKNWCEEQ 392
Query: 539 FTHGSYSHVRVRSSGSDYDILAESVGSRLFFAGEATTRQYPATMHGAYLSGLREASRILR 598
++ G Y+ + Y + R++FAG T + M GA +G R A IL
Sbjct: 393 YSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGWMEGAVEAGERAAREILH 452
Query: 599 A 599
A
Sbjct: 453 A 453
>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C73|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 113/481 (23%), Positives = 167/481 (34%), Gaps = 108/481 (22%)
Query: 179 KQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLS 238
K L G VVVLE R R GGR YT + K VDLGGS + G N + LA++L
Sbjct: 21 KLLHDSGLNVVVLEARDRVGGRTYTLRNQK---VKYVDLGGSYV-GPTQNRILRLAKELG 76
Query: 239 IPLHKVRD-------------------------------------------NCPLYKPDG 255
+ +KV + P P
Sbjct: 77 LETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWK 136
Query: 256 APVNKEIDSKVEFIFNKLLDKVMELRKIKGGFANDVSLGSVLETLRQLYAVARSTEEREL 315
AP+ +E D+ +LLDK+ K L TL V T E
Sbjct: 137 APLAEEWDN---MTMKELLDKLCWTESAKQ-----------LATLFVNLCVTAETHEVSA 182
Query: 316 LDWHLANLEYANAGCLSDLSATYWDQDDPYEMGGDHCFLAGGNWRLIKALCE--GVPIFY 373
L W L ++ G +S T GG GG+ ++ + + + G +
Sbjct: 183 L-WFLWYVKQC-GGTTRIISTT---------NGGQERKFVGGSGQVSERIMDLLGDRVKL 231
Query: 374 EKTVNTIKYGNEGVEV-IAGDQMFQADMVLCTVP--LGVLKEKTIKFEPELPQRKVAAID 430
E+ V I E V V +M++A V+ +P LG+ I F P LP + I
Sbjct: 232 ERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMIT 287
Query: 431 RLGFGLLNKVAMVFPYVFW------------GEELDTFGCLNEQSSKRGEFFLFYGYHTV 478
R+ G + K + + FW GEE L++ + G + G+
Sbjct: 288 RVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDD-TKPEGNYAAIMGFILA 346
Query: 479 SGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDP 538
L L E K L +VL L + +P+ W +
Sbjct: 347 HKARKLARLTKEERLKKL-----CELYAKVLGSLEAL---------EPVHYEEKNWCEEQ 392
Query: 539 FTHGSYSHVRVRSSGSDYDILAESVGSRLFFAGEATTRQYPATMHGAYLSGLREASRILR 598
++ G Y+ + Y + R++FAG T + M GA +G R A IL
Sbjct: 393 YSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGFMEGAVEAGERAAREILH 452
Query: 599 A 599
A
Sbjct: 453 A 453
>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK4|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK5|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
pdb|2BK5|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
Length = 520
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 113/481 (23%), Positives = 166/481 (34%), Gaps = 108/481 (22%)
Query: 179 KQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLS 238
K L G VVVLE R R GGR YT + K VDLGGS + G N + LA++L
Sbjct: 21 KLLHDSGLNVVVLEARDRVGGRTYTLRNQK---VKYVDLGGSYV-GPTQNRILRLAKELG 76
Query: 239 IPLHKVRD-------------------------------------------NCPLYKPDG 255
+ +KV + P P
Sbjct: 77 LETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWK 136
Query: 256 APVNKEIDSKVEFIFNKLLDKVMELRKIKGGFANDVSLGSVLETLRQLYAVARSTEEREL 315
AP+ +E D+ +LLDK+ K L TL V T E
Sbjct: 137 APLAEEWDN---MTMKELLDKLCWTESAKQ-----------LATLFVNLCVTAETHEVSA 182
Query: 316 LDWHLANLEYANAGCLSDLSATYWDQDDPYEMGGDHCFLAGGNWRLIKALCE--GVPIFY 373
L W L ++ G S T GG GG+ ++ + + + G +
Sbjct: 183 L-WFLWYVKQC-GGTTRIFSTT---------NGGQERKFVGGSGQVSERIMDLLGDRVKL 231
Query: 374 EKTVNTIKYGNEGVEV-IAGDQMFQADMVLCTVP--LGVLKEKTIKFEPELPQRKVAAID 430
E+ V I E V V +M++A V+ +P LG+ I F P LP + I
Sbjct: 232 ERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMIT 287
Query: 431 RLGFGLLNKVAMVFPYVFW------------GEELDTFGCLNEQSSKRGEFFLFYGYHTV 478
R+ G + K + + FW GEE L++ + G + G+
Sbjct: 288 RVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDD-TKPEGNYAAIMGFILA 346
Query: 479 SGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDP 538
L L E K L +VL L + +P+ W +
Sbjct: 347 HKARKLARLTKEERLKKL-----CELYAKVLGSLEAL---------EPVHYEEKNWCEEQ 392
Query: 539 FTHGSYSHVRVRSSGSDYDILAESVGSRLFFAGEATTRQYPATMHGAYLSGLREASRILR 598
++ G Y+ + Y + R++FAG T + M GA +G R A IL
Sbjct: 393 YSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILH 452
Query: 599 A 599
A
Sbjct: 453 A 453
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
Length = 482
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 98/414 (23%), Positives = 155/414 (37%), Gaps = 59/414 (14%)
Query: 165 VIIVXXXXXXXXXXKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITG 224
V+IV ++L G V VLE R R GGR +T + + A +++GG ++
Sbjct: 10 VVIVGAGPSGLTAARELKKAGLSVAVLEARDRVGGRTWTDTI----DGAMLEIGGQWVSP 65
Query: 225 IHANPLGVLARQLSIPLH-KVRDNCPLY----------KPDGAPVNK----EIDSKVEFI 269
L L +L + ++ + RD +Y D PVN+ E+D K+ I
Sbjct: 66 -DQTVLMELLDELGLKMYSRYRDGESVYIGADGKRTQYTGDTFPVNETTKAEMD-KLVAI 123
Query: 270 FNKLLDKVMELRKIKGGFANDVSLGSVLETLRQ-------------LYAVARSTEERELL 316
++L ++ A ++ S LRQ A T+
Sbjct: 124 LDELAAEIGPTEPWAHPKARELDTISFHHWLRQNSNDEEACNNIGLFIAGGMLTKPAHAF 183
Query: 317 DWHLANLEYANAGCLSDLSATYWDQD---DPYEMGGDHCFLAGGNWRLIKALCEGVPIFY 373
A L A+AG S L+ D+D D +GG L++A G +
Sbjct: 184 SALQAVLMAASAGSFSHLT----DEDFILDKRVIGGMQQV------SLLQAAELGDDVVL 233
Query: 374 EKTVNTIKYGNEGVEVIAGDQMFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLG 433
V TIK+ GV V++ A V+ VP + + F+P LP+R+
Sbjct: 234 NSPVRTIKWDENGVSVVSERATVNARFVIMAVPPNLYSR--VSFDPPLPRRQHQMHQHQS 291
Query: 434 FGLLNKVAMVFPYVFWGEELDTFGCLNEQSSKRGEFFLFYGYHTVSGGP--VLNALVAGE 491
GL+ KV V+ FW EE L+ G +T G L V+ E
Sbjct: 292 LGLVIKVHAVYDTPFWREE-----GLSGTGFSAGALVQEVYDNTNHGDSRGTLVGFVSDE 346
Query: 492 AAKTFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDPFTHGSYS 545
A + +L + G K + P + WGS+ +T G+Y+
Sbjct: 347 KADAVFELSAEDRKKAILESIAGFLGDKAL---TPEVYYESDWGSEEWTRGAYA 397
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex With
L- Phenylalanine
Length = 486
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 116/485 (23%), Positives = 191/485 (39%), Gaps = 75/485 (15%)
Query: 160 ANEGSVIIVXXXXXXXXXXKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGG 219
+N V++V L G +V VLE R GGRV T + K+ +A +LG
Sbjct: 31 SNPKHVVVVGAGMSGLSAAYVLSGAGHQVTVLEASERAGGRVRTYRNDKEDWYA--NLGP 88
Query: 220 SVITGIHANPLGVLARQLSIPLHKVRDNCPLYKPDGAPVNKEIDSKVEFIFNKLLDKVME 279
+ H + R+ + L++ ++E D+ FI N + +V E
Sbjct: 89 MRLPEKH-RIVREYIRKFGLQLNEF--------------SQENDNAWYFIKN-IRKRVGE 132
Query: 280 LRKIKG---------------GFANDVSLGSVLETLRQL---YAVAR----STEERELLD 317
++K G G + SLG V+E L++ Y + + ST+E L +
Sbjct: 133 VKKDPGVLKYPVKPSEEGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLLKE 192
Query: 318 WHLANLEYANAGCLSDLSATYW-------DQDDPYEMGGDHCFLAGGNWRLIKALCEGV- 369
+L+ G L + + Y+ DD + + GG +L ++ +
Sbjct: 193 GNLSPGAVDMIGDLMNEDSGYYVSFPESLRHDDIFAYEKRFDEIVGGMDKLPTSMYRAIE 252
Query: 370 -PIFYEKTVNTIKYGNEGVEVI---AGDQM--FQADMVL-CTVPLGVLKEKTIKFEPELP 422
+ V I+ E V V+ +M AD V+ CT + IKFEP LP
Sbjct: 253 EKVHLNAQVIKIQKNAEKVTVVYQTPAKEMASVTADYVIVCTTSRAT---RRIKFEPPLP 309
Query: 423 QRKVAAIDRLGFGLLNKVAMVFPYVFWGEELDTFGCLNEQSSKRGEFFLFYGYHT-VSGG 481
+K A+ + + K+ + FW +E G R F++Y H SG
Sbjct: 310 PKKAHALRSVHYRSGTKIFLTCTKKFWEDEGIHGGKSTTDLPSR---FIYYPNHNFTSGV 366
Query: 482 PVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYN-PKGIDVPDPLQTIC-----TRWG 535
V+ A G+ A F+++D V+N L I+ P+ + +QT C +W
Sbjct: 367 GVIIAYGIGDDANFFQALDFKDCADIVINDLSLIHQLPR-----EEIQTFCYPSMIQKWS 421
Query: 536 SDPFTHGSYSHVRVRSSGSDYDILAESVGSRLFFAGEATTRQYPATMHGAYLSGLREASR 595
D + G + + L SV R++FAGE T + + SGLR A
Sbjct: 422 LDKYAMGGITTFTPYQFQHFSESLTASV-DRIYFAGEHTAEAH-GWIDSTIKSGLRAARD 479
Query: 596 ILRAT 600
+ RA+
Sbjct: 480 VNRAS 484
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 90/411 (21%), Positives = 151/411 (36%), Gaps = 52/411 (12%)
Query: 165 VIIVXXXXXXXXXXKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITG 224
V IV L G V V+E R R GGR +T + + A +++GG ++
Sbjct: 8 VAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTI----DGAVLEIGGQWVSP 63
Query: 225 IHANPLGVLARQLSIPLHKVRDNCPLY----------KPDGAPVNKEIDSKVEFIFNKLL 274
+ +L + R+ +Y D P N+ +++ + +++
Sbjct: 64 DQTALISLLDELGLKTFERYREGESVYISSAGERTRYTGDSFPTNETTKKEMDRLIDEMD 123
Query: 275 D----------------KVMELRKIKGGFANDVSLGSVLETLRQLYAVARSTEERELLDW 318
D + ++ K N + + A T+
Sbjct: 124 DLAAQIGAEEPWAHPLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSA 183
Query: 319 HLANLEYANAGCLSDLSATYWDQD---DPYEMGGDHCFLAGGNWRLIKALCEGVPIFYEK 375
A L A+AG S L D+D D +GG + + R+ +AL G +F
Sbjct: 184 LQAVLMAASAGSFSHLV----DEDFILDKRVIGG----MQQVSIRMAEAL--GDDVFLNA 233
Query: 376 TVNTIKYGNEGVEVIA-GDQMFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGF 434
V T+K+ G V+A GD +A V+ VP + I ++P LP+R+
Sbjct: 234 PVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYSR--ISYDPPLPRRQHQMHQHQSL 291
Query: 435 GLLNKVAMVFPYVFWGEELDTFGCLNEQSSKRGEFFLFYGYHTVSGGPVLNALVAGEAAK 494
GL+ KV V+ FW E+ G S E + + G L A V+ E A
Sbjct: 292 GLVIKVHAVYETPFWRED-GLSGTGFGASEVVQEVYDNTNHEDDRG--TLVAFVSDEKAD 348
Query: 495 TFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDPFTHGSYS 545
+ +L L PK +P+ + WGS+ +T G+Y+
Sbjct: 349 AMFELSAEERKATILASLARYLGPKA---EEPVVYYESDWGSEEWTRGAYA 396
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/411 (21%), Positives = 150/411 (36%), Gaps = 52/411 (12%)
Query: 165 VIIVXXXXXXXXXXKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITG 224
V IV L G V V+E R R GGR +T + + A +++GG ++
Sbjct: 8 VAIVGAGISGLAAATALRKAGLSVAVIEARDRVGGRTWTDTI----DGAVLEIGGQWVSP 63
Query: 225 IHANPLGVLARQLSIPLHKVRDNCPLY----------KPDGAPVNKEIDSKVEFIFNKLL 274
+ +L + R+ +Y D P N+ +++ + +++
Sbjct: 64 DQTALISLLDELGLKTFERYREGESVYISSAGERTRYTGDSFPTNETTKKEMDRLIDEMD 123
Query: 275 D----------------KVMELRKIKGGFANDVSLGSVLETLRQLYAVARSTEERELLDW 318
D + ++ K N + + A T+
Sbjct: 124 DLAAQIGAEEPWAHPLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSA 183
Query: 319 HLANLEYANAGCLSDLSATYWDQD---DPYEMGGDHCFLAGGNWRLIKALCEGVPIFYEK 375
A L A+AG S L D+D D +GG + + R+ +AL G +F
Sbjct: 184 LQAVLMAASAGSFSHLV----DEDFILDKRVIGG----MQQVSIRMAEAL--GDDVFLNA 233
Query: 376 TVNTIKYGNEGVEVIA-GDQMFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGF 434
V T+K+ G V+A GD +A V+ VP + I ++P LP+R+
Sbjct: 234 PVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYSR--ISYDPPLPRRQHQMHQHQSL 291
Query: 435 GLLNKVAMVFPYVFWGEELDTFGCLNEQSSKRGEFFLFYGYHTVSGGPVLNALVAGEAAK 494
GL+ KV V+ FW E+ G S E + + G L A V+ E A
Sbjct: 292 GLVIKVHAVYETPFWRED-GLSGTGFGASEVVQEVYDNTNHEDDRG--TLVAFVSDEKAD 348
Query: 495 TFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDPFTHGSYS 545
+ +L L PK +P+ + WGS+ +T G Y+
Sbjct: 349 AMFELSAEERKATILASLARYLGPKA---EEPVVYYESDWGSEEWTRGCYA 396
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/411 (21%), Positives = 150/411 (36%), Gaps = 52/411 (12%)
Query: 165 VIIVXXXXXXXXXXKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITG 224
V IV L G V V+E R R GGR +T + + A +++GG ++
Sbjct: 8 VAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTI----DGAVLEIGGQWVSP 63
Query: 225 IHANPLGVLARQLSIPLHKVRDNCPLY----------KPDGAPVNKEIDSKVEFIFNKLL 274
+ +L + R+ +Y D P N+ +++ + +++
Sbjct: 64 DQTALISLLDELGLKTFERYREGESVYISSAGERTRYTGDSFPTNETTKKEMDRLIDEMD 123
Query: 275 D----------------KVMELRKIKGGFANDVSLGSVLETLRQLYAVARSTEERELLDW 318
D + ++ K N + + A T+
Sbjct: 124 DLAAQIGAEEPWAHPLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSA 183
Query: 319 HLANLEYANAGCLSDLSATYWDQD---DPYEMGGDHCFLAGGNWRLIKALCEGVPIFYEK 375
A L A+AG S L D+D D +GG + + R+ +AL G +F
Sbjct: 184 LQAVLMAASAGSFSHLV----DEDFILDKRVIGG----MQQVSIRMAEAL--GDDVFLNA 233
Query: 376 TVNTIKYGNEGVEVIA-GDQMFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGF 434
V T+K+ G V+A GD +A V+ VP + I ++P LP+R+
Sbjct: 234 PVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYSR--ISYDPPLPRRQHQMHQHQSL 291
Query: 435 GLLNKVAMVFPYVFWGEELDTFGCLNEQSSKRGEFFLFYGYHTVSGGPVLNALVAGEAAK 494
GL+ KV V+ FW E+ G S E + + G L A V+ E A
Sbjct: 292 GLVIKVHAVYETPFWRED-GLSGTGFGASEVVQEVYDNTNHEDDRG--TLVAFVSDEKAD 348
Query: 495 TFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDPFTHGSYS 545
+ +L L PK +P+ + WGS+ +T G Y+
Sbjct: 349 AMFELSAEERKATILASLARYLGPK---AEEPVVYYESDWGSEEWTRGCYT 396
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c Mutant
Length = 453
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/411 (21%), Positives = 150/411 (36%), Gaps = 52/411 (12%)
Query: 165 VIIVXXXXXXXXXXKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITG 224
V IV L G V V+E R R GGR +T + + A +++GG ++
Sbjct: 8 VAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTI----DGAVLEIGGQWVSP 63
Query: 225 IHANPLGVLARQLSIPLHKVRDNCPLY----------KPDGAPVNKEIDSKVEFIFNKLL 274
+ +L + R+ +Y D P N+ +++ + +++
Sbjct: 64 DQTALISLLDELGLKTFERYREGESVYISSAGERTRYTGDSFPTNETTKKEMDRLIDEMD 123
Query: 275 D----------------KVMELRKIKGGFANDVSLGSVLETLRQLYAVARSTEERELLDW 318
D + ++ K N + + A T+
Sbjct: 124 DLAAQIGAEEPWAHPLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSA 183
Query: 319 HLANLEYANAGCLSDLSATYWDQD---DPYEMGGDHCFLAGGNWRLIKALCEGVPIFYEK 375
A L A+AG S L D+D D +GG + + R+ +AL G +F
Sbjct: 184 LQAVLMAASAGSFSHLV----DEDFILDKRVIGG----MQQVSIRMAEAL--GDDVFLNA 233
Query: 376 TVNTIKYGNEGVEVIA-GDQMFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGF 434
V T+K+ G V+A GD +A V+ VP + I ++P LP+R+
Sbjct: 234 PVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYSR--ISYDPPLPRRQHQMHQHQSL 291
Query: 435 GLLNKVAMVFPYVFWGEELDTFGCLNEQSSKRGEFFLFYGYHTVSGGPVLNALVAGEAAK 494
GL+ KV V+ FW E+ G S E + + G L A V+ E A
Sbjct: 292 GLVIKVHAVYETPFWRED-GLSGTGFGASEVVQEVYDNTNHEDDRG--TLVAFVSDEKAD 348
Query: 495 TFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDPFTHGSYS 545
+ +L L PK +P+ + WGS+ +T G Y+
Sbjct: 349 AMFELSAEERKATILASLARYLGPKA---EEPVVYYESDWGSEEWTRGCYA 396
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
Length = 486
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 112/493 (22%), Positives = 188/493 (38%), Gaps = 83/493 (16%)
Query: 156 MPEEANEGSVIIVXXXXXXXXXXKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAV 215
+ + +N V++V L G KV VLE R GGRV T + K+G +A
Sbjct: 27 LKKTSNPKHVVVVGAGMSGLSAAYVLAGAGHKVTVLEASERAGGRVRTHRNSKEGWYA-- 84
Query: 216 DLGGSVITGIHANPLGVLARQLSIPLHKVRDNCPLYKPDGAPVNKEIDSKVEFIFNKLLD 275
+LG I H + R+ + L++ ++E D+ FI N +
Sbjct: 85 NLGPMRIPEKH-RIVREYIRKFGLNLNEF--------------SQENDNAWYFIKN-IRK 128
Query: 276 KVMELRKIKG---------------GFANDVSLGSVLETLRQL---YAVAR----STEER 313
+V E+ K G G + SLGS ++ L++ Y + + ST+E
Sbjct: 129 RVGEVNKDPGLLKYPVKPSEEGKSAGQLYEESLGSAVKDLKRTNCSYILNKYDTYSTKEY 188
Query: 314 ELLDWHLANLEYANAGCLSDLSATYW-------DQDDPYEMGGDHCFLAGGNWRLIKALC 366
+ + +L+ G L + + Y+ DD + + GG +L ++
Sbjct: 189 LIKEGNLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVGGMDQLPTSMY 248
Query: 367 EGVPIFYEKTVNTIKYGNEGVEVIAGDQMFQAD--------MVLCTVPLGVLKEKTIKFE 418
+ + IK +V Q + D +++CT + I+FE
Sbjct: 249 RAIEEKVKFNARVIKIQQNANQVTVTYQTPEKDTSSNTADYVIVCTTSRAA---RRIQFE 305
Query: 419 PELPQRKVAAIDRLGFGLLNKVAMVFPYVFWGEELDTFGCLNEQSSKRGEFFLFYGYHTV 478
P LP +K A+ + + K+ + FW ++ G R F++Y H
Sbjct: 306 PPLPPKKQHALRSVHYRSGTKIFLTCSSKFWEDDGIHGGKSTTDLPSR---FIYYPNHNF 362
Query: 479 SGGP-VLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYN-PKGIDVPDPLQTIC----- 531
S G V+ A G+ A F+++ V N L I+ PK + +Q+ C
Sbjct: 363 STGVGVIIAYGIGDDANFFQALKFKDCADIVFNDLSLIHQLPK-----EEIQSFCYPSMI 417
Query: 532 TRWGSDPFTHGSYSHVRVRSSGSDYDILAESVGSRLFFAGEATTRQYPATMHG----AYL 587
+W D + G+ + + L G R+FFAGE Y A HG
Sbjct: 418 QKWSLDKYAMGAITTFTPYQFQRFSEALTAPQG-RIFFAGE-----YTAEAHGWIDSTIK 471
Query: 588 SGLREASRILRAT 600
SGL A + RA+
Sbjct: 472 SGLTAARDVNRAS 484
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 115/498 (23%), Positives = 187/498 (37%), Gaps = 77/498 (15%)
Query: 160 ANEGSVIIVXXXXXXXXXXKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGG 219
+N V+IV L G +V VLE RPGGRV T + + G +A +LG
Sbjct: 31 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYA--NLGP 88
Query: 220 SVITGIHANPLGVLARQLSIPLHKVRDNCPLYKPDGAPVNKEIDSKVEFIFNKLLDKVME 279
+ H + R+ + L++ ++E D+ FI N + KV E
Sbjct: 89 MRLPEKH-RIVREYIRKFDLRLNEF--------------SQENDNAWYFIKN-IRKKVGE 132
Query: 280 LRKIKG---------------GFANDVSLGSVLETLRQL---YAVAR----STEERELLD 317
++K G G + SLG V+E L++ Y + + ST+E + +
Sbjct: 133 VKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKE 192
Query: 318 WHLANLEYANAGCLSDLSATYW-------DQDDPYEMGGDHCFLAGGNWRLIKALCEGV- 369
L+ G L + + Y+ DD + + G +L A+ +
Sbjct: 193 GDLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRDIQ 252
Query: 370 -PIFYEKTVNTIKYGNEGVEVI-----AGDQMFQADMVL-CTVPLGVLKEKTIKFEPELP 422
+ + V I+ ++ V V+ AD V+ CT V + IKF P L
Sbjct: 253 DKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAV---RLIKFNPPLL 309
Query: 423 QRKVAAIDRLGFGLLNKVAMVFPYVFWGEELDTFGCLNEQSSKRGEFFLFYGYHTVSGGP 482
+K A+ + + K+ + FW ++ G R F++Y H + G
Sbjct: 310 PKKAHALRSVHYRSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSR---FIYYPNHNFTNGV 366
Query: 483 -VLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTIC-----TRWGS 536
V+ A G+ A F+++D V N L I+ D+ Q+ C +W
Sbjct: 367 GVIIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDI----QSFCYPSVIQKWSL 422
Query: 537 DPFTHGSYSHVRVRSSGSDYDILAESVGSRLFFAGEATTRQYPATMHGAYLSGLREASRI 596
D + G + D L S G R++FAGE Y A HG S ++ R
Sbjct: 423 DKYAMGGITTFTPYQFQHFSDPLTASQG-RIYFAGE-----YTAQAHGWIDSTIKSGLRA 476
Query: 597 LRATRVQKYNSRRSLLRN 614
R + N L N
Sbjct: 477 ARDVNLASENPSGIHLSN 494
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
Length = 497
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 112/489 (22%), Positives = 185/489 (37%), Gaps = 79/489 (16%)
Query: 160 ANEGSVIIVXXXXXXXXXXKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGG 219
+N V+IV L + G +V VLE R GG+V T + K+G +A +LG
Sbjct: 44 SNPKRVVIVGAGMSGLSAAYVLANAGHQVTVLEASERAGGQVKTYRNEKEGWYA--NLGP 101
Query: 220 SVITGIHANPLGVLARQLSIPLHKVRDNCPLYKPDGAPVNKEIDSKVEFIFNKLLDKVME 279
+ H + R+ + L++ ++E ++ FI N + +V E
Sbjct: 102 MRLPEKH-RIVREYIRKFGLQLNEF--------------SQENENAWYFIKN-IRKRVGE 145
Query: 280 LRKIKGGFANDVSLGSVLETLRQLY--AVARSTEE--RELLDWHL------ANLEYA-NA 328
+ K G V V ++ QLY ++ ++ EE R + L + EY
Sbjct: 146 VNKDPGVLDYPVKPSEVGKSAGQLYEESLQKAVEELRRTNCSYMLNKYDTYSTKEYLLKE 205
Query: 329 GCLS----DLSATYWDQDDPY------EMGGDHCF--------LAGGNWRLIKALCEGVP 370
G LS D+ ++D Y + D F + GG +L ++ + +
Sbjct: 206 GNLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVGGMDKLPTSMYQAIQ 265
Query: 371 IFYEKTVNTIKYGNEGVEVIAGDQMFQAD--------MVLCTVPLGVLKEKTIKFEPELP 422
IK + EV Q + + +++CT + IKFEP LP
Sbjct: 266 EKVHLNARVIKIQQDVKEVTVTYQTSEKETLSVTADYVIVCTTSRAA---RRIKFEPPLP 322
Query: 423 QRKVAAIDRLGFGLLNKVAMVFPYVFWGEELDTFGCLNEQSSKRGEFFLFYGYHTVSGGP 482
+K A+ + + K+ + FW ++ G R F++Y H G
Sbjct: 323 PKKAHALRSVHYRSGTKIFLTCTKKFWEDDGIHGGKSTTDLPSR---FIYYPNHNFPNGV 379
Query: 483 -VLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYN-PKGIDVPDPLQTIC-----TRWG 535
V+ A G+ A FE++D V+N L I+ PK + +Q IC RW
Sbjct: 380 GVIIAYGIGDDANYFEALDFEDCGDIVINDLSLIHQLPK-----EEIQAICRPSMIQRWS 434
Query: 536 SDPFTHGSYSHVRVRSSGSDYDILAESVGSRLFFAGEATTRQYPATMHGAYLSGLREASR 595
D + G + + L V R++FAGE Y A HG S ++
Sbjct: 435 LDKYAMGGITTFTPYQFQHFSEALTAPV-DRIYFAGE-----YTAQAHGWIASTIKSGPE 488
Query: 596 ILRATRVQK 604
L R +
Sbjct: 489 GLDVNRASE 497
>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
Arthrobacter Nicotinovorans
pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound 6-Hydroxy-L-Nicotine
Oxidase From Arthrobacter Nicotinovorans
pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine Oxidase
With Substrate Bound At Active Site And Inhibitor At
Exit Cavity
pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Intermediate
Methylmyosmine Product Formed During Catalytic Turnover
pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final Ketone
Product Formed During Catalytic Turnover
pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product Bound
At Active Site
pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor
Bound At Active Site And Turnover Product At Exit Cavity
pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Nicotinamide
Length = 431
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 104/426 (24%), Positives = 163/426 (38%), Gaps = 51/426 (11%)
Query: 179 KQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLS 238
+ L + G KV++LEG R GGR Y+++ + V++GG+ + H L +
Sbjct: 18 RDLTNAGKKVLLLEGGERLGGRAYSRE-SRNVPGLRVEIGGAYLHRKHHPRLAAELDRYG 76
Query: 239 IPLHKVRDNC-------PLYKPDGAPVNKEIDSKVEFIFNKLLDKVMELRKIKGGFAN-- 289
IP + P P+ VE LL + ++ G N
Sbjct: 77 IPTAAASEFTSFRHRLGPTAVDQAFPIPGSEAVAVEAATYTLLRDAHRI-DLEKGLENQD 135
Query: 290 ----DVSLGSVLETLRQLYAVARSTEERELLDWHLANL----EYANAGCLSDLSATYWDQ 341
D+ L ++ L L V+R LL W L + A+A + L A +
Sbjct: 136 LEDLDIPLNEYVDKL-DLPPVSRQF----LLAWAWNMLGQPADQASALWMLQLVAAHHYS 190
Query: 342 DDPYEMGGDHCFLAGGNWRLIKALCEGVP-IFYEKTVNTIKYGNEGVEVIAGD-QMFQAD 399
+ D F + G+ L+ A+ + +P I + V I + V V D FQA
Sbjct: 191 ILGVVLSLDEVF-SNGSADLVDAMSQEIPEIRLQTVVTGIDQSGDVVNVTVKDGHAFQAH 249
Query: 400 MVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFWGEELDTFGCL 459
V+ P+ + I F P LP+R+ + I+ G K+ + G E C+
Sbjct: 250 SVIVATPMNTWRR--IVFTPALPERRRSVIEEGHGGQGLKILIHVRGAEAGIE-----CV 302
Query: 460 NEQSSKRGEFFLFYGYHTVSGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPK 519
+ G F Y Y VS L LVA + +F+ D + VL L +
Sbjct: 303 GD-----GIFPTLYDYCEVSESERL--LVAFTDSGSFDPTDIGAVKDAVLYYLPEV-EVL 354
Query: 520 GIDVPDPLQTICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVGSRLFFAGEATTRQYP 579
GID D W +DP G + RV + L E G R+ F G + ++P
Sbjct: 355 GIDYHD--------WIADPLFEGPWVAPRVGQFSRVHKELGEPAG-RIHFVGSDVSLEFP 405
Query: 580 ATMHGA 585
+ GA
Sbjct: 406 GYIEGA 411
>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
Length = 425
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 104/426 (24%), Positives = 163/426 (38%), Gaps = 51/426 (11%)
Query: 179 KQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLS 238
+ L + G KV++LEG R GGR Y+++ + V++GG+ + H L +
Sbjct: 18 RDLTNAGKKVLLLEGGERLGGRAYSRE-SRNVPGLRVEIGGAYLHRKHHPRLAAELDRYG 76
Query: 239 IPLHKVRDNC-------PLYKPDGAPVNKEIDSKVEFIFNKLLDKVMELRKIKGGFAN-- 289
IP + P P+ VE LL + ++ G N
Sbjct: 77 IPTAAASEFTSFRHRLGPTAVDQAFPIPGSEAVAVEAATYTLLRDAHRI-DLEKGLENQD 135
Query: 290 ----DVSLGSVLETLRQLYAVARSTEERELLDWHLANL----EYANAGCLSDLSATYWDQ 341
D+ L ++ L L V+R LL W L + A+A + L A +
Sbjct: 136 LEDLDIPLNEYVDKL-DLPPVSRQF----LLAWAWNMLGQPADQASALWMLQLVAAHHYS 190
Query: 342 DDPYEMGGDHCFLAGGNWRLIKALCEGVP-IFYEKTVNTIKYGNEGVEVIAGD-QMFQAD 399
+ D F + G+ L+ A+ + +P I + V I + V V D FQA
Sbjct: 191 ILGVVLSLDEVF-SNGSADLVDAMSQEIPEIRLQTVVTGIDQSGDVVNVTVKDGHAFQAH 249
Query: 400 MVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFWGEELDTFGCL 459
V+ P+ + I F P LP+R+ + I+ G K+ + G E C+
Sbjct: 250 SVIVATPMNTWRR--IVFTPALPERRRSVIEEGHGGQGLKILIHVRGAEAGIE-----CV 302
Query: 460 NEQSSKRGEFFLFYGYHTVSGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPK 519
+ G F Y Y VS L LVA + +F+ D + VL L +
Sbjct: 303 GD-----GIFPTLYDYCEVSESERL--LVAFTDSGSFDPTDIGAVKDAVLYYLPEV-EVL 354
Query: 520 GIDVPDPLQTICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVGSRLFFAGEATTRQYP 579
GID D W +DP G + RV + L E G R+ F G + ++P
Sbjct: 355 GIDYHD--------WIADPLFEGPWVAPRVGQFSRVHKELGEPAG-RIHFVGSDVSLEFP 405
Query: 580 ATMHGA 585
+ GA
Sbjct: 406 GYIEGA 411
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 78/206 (37%), Gaps = 5/206 (2%)
Query: 394 QMFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFWGEEL 453
+ ++ V+ +P +L K I F+PELP + I RL G + K + + FW ++
Sbjct: 270 EHYECKYVISAIP-PILTAK-IHFKPELPPERNQLIQRLPMGAVIKCMVYYKEAFWKKK- 326
Query: 454 DTFGCLNEQSSKRGEFFLFYGYHTVSGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLR 513
D GC+ + + P + + A + ++ +
Sbjct: 327 DYCGCMIIEDEEAPIAITLDDTKPDGSLPAIMGFILARKADRLAKLHKDIRKRKICELYA 386
Query: 514 GIYNPKGIDVPDPLQTICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVGSRLFFAGEA 573
+ + + P+ W + ++ G Y+ + Y + R++FAG
Sbjct: 387 KVLGSQ--EALYPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIYFAGTE 444
Query: 574 TTRQYPATMHGAYLSGLREASRILRA 599
T Q+ M GA +G R A +L A
Sbjct: 445 TATQWSGYMEGAVEAGERAAREVLNA 470
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 165 VIIVXXXXXXXXXXKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITG 224
V+++ K L + V+VLE R R GGR YT + VD+GG+ + G
Sbjct: 24 VVVIGGGISGLAAAKLLSEYKINVLVLEARDRVGGRTYTV---RNEHVKWVDVGGAYV-G 79
Query: 225 IHANPLGVLARQLSIPLHKVRDN 247
N + L+++L I +KV N
Sbjct: 80 PTQNRILRLSKELGIETYKVNVN 102
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/204 (19%), Positives = 74/204 (36%), Gaps = 5/204 (2%)
Query: 394 QMFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFWGEEL 453
+ ++ V+ +P + + I F PELP + I RL G + K M + FW ++
Sbjct: 262 EHYECKYVINAIPPTLTAK--IHFRPELPAERNQLIQRLPMGAVIKCMMYYKEAFWKKK- 318
Query: 454 DTFGCLNEQSSKRGEFFLFYGYHTVSGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLR 513
D GC+ + P + + A + ++ +
Sbjct: 319 DYCGCMIIEDEDAPISITLDDTKPDGSLPAIMGFILARKADRLAKLHKEIRKKKICELYA 378
Query: 514 GIYNPKGIDVPDPLQTICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVGSRLFFAGEA 573
+ + + P+ W + ++ G Y+ + Y + R+FFAG
Sbjct: 379 KVLGSQ--EALHPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIFFAGTE 436
Query: 574 TTRQYPATMHGAYLSGLREASRIL 597
T ++ M GA +G R A +L
Sbjct: 437 TATKWSGYMEGAVEAGERAAREVL 460
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 165 VIIVXXXXXXXXXXKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITG 224
V+++ K L +G V+VLE R R GGR YT + VD+GG+ + G
Sbjct: 16 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTI---RNEHVDYVDVGGAYV-G 71
Query: 225 IHANPLGVLARQLSIPLHKV 244
N + L+++L I +KV
Sbjct: 72 PTQNRILRLSKELGIETYKV 91
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/204 (19%), Positives = 74/204 (36%), Gaps = 5/204 (2%)
Query: 394 QMFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFWGEEL 453
+ ++ V+ +P + + I F PELP + I RL G + K M + FW ++
Sbjct: 251 EHYECKYVINAIPPTLTAK--IHFRPELPAERNQLIQRLPMGAVIKCMMYYKEAFWKKK- 307
Query: 454 DTFGCLNEQSSKRGEFFLFYGYHTVSGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLR 513
D GC+ + P + + A + ++ +
Sbjct: 308 DYCGCMIIEDEDAPISITLDDTKPDGSLPAIMGFILARKADRLAKLHKEIRKKKICELYA 367
Query: 514 GIYNPKGIDVPDPLQTICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVGSRLFFAGEA 573
+ + + P+ W + ++ G Y+ + Y + R+FFAG
Sbjct: 368 KVLGSQ--EALHPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIFFAGTE 425
Query: 574 TTRQYPATMHGAYLSGLREASRIL 597
T ++ M GA +G R A +L
Sbjct: 426 TATKWSGYMEGAVEAGERAAREVL 449
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 165 VIIVXXXXXXXXXXKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITG 224
V+++ K L +G V+VLE R R GGR YT + VD+GG+ + G
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTI---RNEHVDYVDVGGAYV-G 60
Query: 225 IHANPLGVLARQLSIPLHKV 244
N + L+++L I +KV
Sbjct: 61 PTQNRILRLSKELGIETYKV 80
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/204 (19%), Positives = 74/204 (36%), Gaps = 5/204 (2%)
Query: 394 QMFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFWGEEL 453
+ ++ V+ +P + + I F PELP + I RL G + K M + FW ++
Sbjct: 251 EHYECKYVINAIPPTLTAK--IHFRPELPAERNQLIQRLPMGAVIKCMMYYKEAFWKKK- 307
Query: 454 DTFGCLNEQSSKRGEFFLFYGYHTVSGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLR 513
D GC+ + P + + A + ++ +
Sbjct: 308 DYCGCMIIEDEDAPISITLDDTKPDGSLPAIMGFILARKADRLAKLHKEIRKKKICELYA 367
Query: 514 GIYNPKGIDVPDPLQTICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVGSRLFFAGEA 573
+ + + P+ W + ++ G Y+ + Y + R+FFAG
Sbjct: 368 KVLGSQ--EALHPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIFFAGTE 425
Query: 574 TTRQYPATMHGAYLSGLREASRIL 597
T ++ M GA +G R A +L
Sbjct: 426 TATKWSGYMEGAVEAGERAAREVL 449
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 165 VIIVXXXXXXXXXXKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITG 224
V+++ K L +G V+VLE R R GGR YT + VD+GG+ + G
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTI---RNEHVDYVDVGGAYV-G 60
Query: 225 IHANPLGVLARQLSIPLHKV 244
N + L+++L I +KV
Sbjct: 61 PTQNRILRLSKELGIETYKV 80
>pdb|2JAE|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JAE|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JB1|A Chain A, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB1|B Chain B, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB3|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB3|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB2|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine.
pdb|2JB2|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine
Length = 489
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 180 QLMSFGFKVVVLEGRSRPGGRVYTQKMGKK 209
+L G+KV VLE R+RPGGRV+T + G +
Sbjct: 29 ELQKAGYKVTVLEARTRPGGRVWTARGGSE 58
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 377 VNTIKYGNEGVEVIAGD-QMFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFG 435
V ++ + V A D + F A V+CT+PL VL TI+F P L +++A+
Sbjct: 279 VRSVVNERDAARVTARDGREFVAKRVVCTIPLNVL--STIQFSPALSTERISAMQAGHVS 336
Query: 436 LLNKV 440
+ KV
Sbjct: 337 MCTKV 341
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 377 VNTIKYGNEGVEVIAGD-QMFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFG 435
V ++ + V A D + F A V+CT+PL VL TI+F P L +++A+
Sbjct: 279 VRSVVNERDAARVTARDGREFVAKRVVCTIPLNVL--STIQFSPALSTERISAMQAGHVS 336
Query: 436 LLNKV 440
+ KV
Sbjct: 337 MCTKV 341
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 377 VNTIKYGNEGVEVIAGD-QMFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFG 435
V ++ + V A D + F A V+CT+PL VL TI+F P L +++A+
Sbjct: 279 VRSVVNERDAARVTARDGREFVAKRVVCTIPLNVL--STIQFSPALSTERISAMQAGHVS 336
Query: 436 LLNKV 440
+ KV
Sbjct: 337 MCTKV 341
>pdb|3QLD|A Chain A, Structure Of Probable Mandelate Racemase
(Aalaa1draft_2112) From Alicyclobacillus Acidocaldarius
pdb|3QLD|B Chain B, Structure Of Probable Mandelate Racemase
(Aalaa1draft_2112) From Alicyclobacillus Acidocaldarius
Length = 388
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 251 YKPDGAPVNKEIDS-KVEFIFNKLL-DKVMELRKIKGGFANDVSLGSVLETLRQLYAVAR 308
Y+P+ APV +++D+ ++FI L D +L K++ V L + ++R+L AR
Sbjct: 201 YRPEDAPVLRQLDAYDLQFIEQPLPEDDWFDLAKLQASLRTPVCLDESVRSVRELKLTAR 260
Query: 309 STEEREL 315
R L
Sbjct: 261 LGAARVL 267
>pdb|2M0A|A Chain A, Solution Structure Of Mhv Nsp3a
Length = 114
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 30/66 (45%)
Query: 265 KVEFIFNKLLDKVMELRKIKGGFANDVSLGSVLETLRQLYAVARSTEERELLDWHLANLE 324
KVEF + K+ RKIK FA D + SVL + V + ELLD L +E
Sbjct: 3 KVEFNDKPKVRKIPSTRKIKITFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVE 62
Query: 325 YANAGC 330
+ C
Sbjct: 63 STLSPC 68
>pdb|1E2A|A Chain A, Enzyme Iia From The Lactose Specific Pts From Lactococcus
Lactis
pdb|1E2A|B Chain B, Enzyme Iia From The Lactose Specific Pts From Lactococcus
Lactis
pdb|1E2A|C Chain C, Enzyme Iia From The Lactose Specific Pts From Lactococcus
Lactis
Length = 105
Score = 29.6 bits (65), Expect = 7.1, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 179 KQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDL----GGSVITGIHANPLGVLA 234
+++ GF++V G +R + K + G+FA D GS I H++ G+LA
Sbjct: 4 EEMTLLGFEIVAYAGDAR-SKLLEALKAAENGDFAKADSLVVEAGSCIAEAHSSQTGMLA 62
Query: 235 RQLS 238
R+ S
Sbjct: 63 REAS 66
>pdb|2E2A|A Chain A, Asp81leu Enzyme Iia From The Lactose Specific Pts From
Lactococcus Lactis
pdb|2E2A|B Chain B, Asp81leu Enzyme Iia From The Lactose Specific Pts From
Lactococcus Lactis
pdb|2E2A|C Chain C, Asp81leu Enzyme Iia From The Lactose Specific Pts From
Lactococcus Lactis
Length = 105
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 179 KQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDL----GGSVITGIHANPLGVLA 234
+++ GF++V G +R + K + G+FA D GS I H++ G+LA
Sbjct: 4 EEMTLLGFEIVAYAGDAR-SKLLEALKAAENGDFAKADSLVVEAGSCIAEAHSSQTGMLA 62
Query: 235 RQLS 238
R+ S
Sbjct: 63 REAS 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,816,135
Number of Sequences: 62578
Number of extensions: 944295
Number of successful extensions: 2337
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2161
Number of HSP's gapped (non-prelim): 101
length of query: 752
length of database: 14,973,337
effective HSP length: 106
effective length of query: 646
effective length of database: 8,340,069
effective search space: 5387684574
effective search space used: 5387684574
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)