Query 004458
Match_columns 752
No_of_seqs 515 out of 3312
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 23:45:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004458.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004458hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02529 lysine-specific histo 100.0 2E-135 4E-140 1183.0 73.5 738 1-750 1-738 (738)
2 PLN03000 amine oxidase 100.0 2E-126 3E-131 1108.3 70.2 707 36-742 52-780 (881)
3 PLN02328 lysine-specific histo 100.0 2E-120 5E-125 1059.7 69.0 689 37-738 109-804 (808)
4 PLN02976 amine oxidase 100.0 3.8E-63 8.3E-68 586.9 52.1 545 53-604 439-1190(1713)
5 KOG0029 Amine oxidase [Seconda 100.0 1.4E-59 3.1E-64 529.0 40.1 439 158-602 11-461 (501)
6 PLN02268 probable polyamine ox 100.0 4.2E-52 9.2E-57 469.7 44.4 420 163-600 1-434 (435)
7 PLN02568 polyamine oxidase 100.0 3.5E-50 7.6E-55 460.6 45.4 435 161-601 4-536 (539)
8 PLN02676 polyamine oxidase 100.0 4.9E-49 1.1E-53 448.0 44.6 430 161-605 25-478 (487)
9 KOG0685 Flavin-containing amin 100.0 1.1E-49 2.4E-54 427.0 34.5 430 160-603 19-494 (498)
10 COG1231 Monoamine oxidase [Ami 100.0 2.8E-45 6E-50 394.3 30.5 415 160-601 5-448 (450)
11 PF01593 Amino_oxidase: Flavin 100.0 1.5E-38 3.1E-43 355.0 27.4 418 172-597 1-450 (450)
12 TIGR00562 proto_IX_ox protopor 100.0 3.5E-36 7.5E-41 342.5 36.1 416 162-601 2-461 (462)
13 PRK12416 protoporphyrinogen ox 100.0 9.6E-36 2.1E-40 339.0 37.2 406 163-600 2-461 (463)
14 PRK11883 protoporphyrinogen ox 100.0 6.6E-35 1.4E-39 330.7 36.0 401 163-598 1-450 (451)
15 PLN02576 protoporphyrinogen ox 100.0 9.6E-35 2.1E-39 333.7 35.9 410 160-601 10-488 (496)
16 PRK07233 hypothetical protein; 100.0 6.7E-33 1.4E-37 312.5 36.2 407 164-601 1-432 (434)
17 TIGR02731 phytoene_desat phyto 100.0 2.6E-32 5.6E-37 310.1 36.8 409 164-597 1-453 (453)
18 PLN02612 phytoene desaturase 100.0 1.8E-32 3.9E-37 317.7 35.7 415 160-604 91-552 (567)
19 TIGR03467 HpnE squalene-associ 100.0 2.6E-30 5.7E-35 289.7 35.6 386 176-597 1-418 (419)
20 PRK07208 hypothetical protein; 100.0 1.4E-29 3.1E-34 289.6 38.5 412 160-599 2-460 (479)
21 COG1232 HemY Protoporphyrinoge 100.0 5.6E-30 1.2E-34 282.8 30.8 401 163-597 1-443 (444)
22 PLN02487 zeta-carotene desatur 100.0 9E-29 2E-33 284.1 38.8 414 160-602 73-555 (569)
23 TIGR02732 zeta_caro_desat caro 100.0 7.3E-29 1.6E-33 282.3 34.1 404 164-597 1-474 (474)
24 TIGR02733 desat_CrtD C-3',4' d 100.0 3.3E-26 7.2E-31 262.7 40.0 413 163-598 2-490 (492)
25 TIGR02734 crtI_fam phytoene de 100.0 1.1E-26 2.3E-31 267.5 32.5 409 165-604 1-496 (502)
26 TIGR02730 carot_isom carotene 99.9 2.6E-24 5.7E-29 246.9 40.2 421 163-600 1-492 (493)
27 COG3380 Predicted NAD/FAD-depe 99.9 2E-26 4.4E-31 231.0 17.3 323 163-600 2-331 (331)
28 COG2907 Predicted NAD/FAD-bind 99.9 4.7E-24 1E-28 220.3 23.3 274 161-452 7-311 (447)
29 KOG1276 Protoporphyrinogen oxi 99.9 4.8E-22 1E-26 211.0 28.4 416 160-597 9-490 (491)
30 COG1233 Phytoene dehydrogenase 99.9 1.4E-19 3E-24 206.9 30.6 235 161-408 2-280 (487)
31 COG3349 Uncharacterized conser 99.8 3.4E-20 7.4E-25 204.3 20.2 411 163-603 1-466 (485)
32 KOG4254 Phytoene desaturase [C 99.6 5E-14 1.1E-18 150.9 24.4 240 345-600 250-546 (561)
33 TIGR00031 UDP-GALP_mutase UDP- 99.5 1.4E-12 3E-17 143.5 24.3 234 163-411 2-249 (377)
34 PTZ00363 rab-GDP dissociation 99.5 1.2E-12 2.7E-17 147.1 21.8 236 161-405 3-286 (443)
35 PF13450 NAD_binding_8: NAD(P) 99.4 3.9E-13 8.4E-18 111.4 6.9 67 167-237 1-68 (68)
36 COG2081 Predicted flavoprotein 99.4 2.5E-11 5.4E-16 130.3 20.2 55 352-406 103-164 (408)
37 PRK13977 myosin-cross-reactive 99.3 4.5E-11 9.8E-16 136.1 18.9 76 158-237 18-97 (576)
38 PF04433 SWIRM: SWIRM domain; 99.3 1.6E-12 3.4E-17 113.1 4.5 82 63-146 4-86 (86)
39 PRK01747 mnmC bifunctional tRN 99.2 7.5E-11 1.6E-15 140.5 10.3 94 108-201 179-299 (662)
40 PRK10015 oxidoreductase; Provi 99.2 6.3E-09 1.4E-13 117.6 25.2 39 161-199 4-42 (429)
41 PF03486 HI0933_like: HI0933-l 99.1 2.2E-10 4.7E-15 127.8 12.2 50 357-406 107-163 (409)
42 PRK10157 putative oxidoreducta 99.1 9E-09 2E-13 116.4 25.2 39 162-200 5-43 (428)
43 TIGR02032 GG-red-SF geranylger 99.1 4.7E-08 1E-12 104.0 25.0 37 163-199 1-37 (295)
44 PRK07364 2-octaprenyl-6-methox 99.0 1.2E-07 2.6E-12 106.7 27.4 37 161-197 17-53 (415)
45 COG0644 FixC Dehydrogenases (f 99.0 6.9E-08 1.5E-12 108.1 24.3 43 161-203 2-44 (396)
46 COG0562 Glf UDP-galactopyranos 99.0 2.9E-09 6.4E-14 110.7 12.0 233 162-411 1-243 (374)
47 TIGR01988 Ubi-OHases Ubiquinon 99.0 1.4E-07 3E-12 104.7 26.0 35 164-198 1-35 (385)
48 PF01266 DAO: FAD dependent ox 99.0 7.9E-09 1.7E-13 112.8 15.7 58 352-409 137-203 (358)
49 PRK11259 solA N-methyltryptoph 99.0 2.5E-07 5.3E-12 102.6 27.7 43 367-409 162-204 (376)
50 COG0579 Predicted dehydrogenas 99.0 1.7E-08 3.6E-13 112.0 17.5 43 161-203 2-46 (429)
51 PRK08773 2-octaprenyl-3-methyl 98.9 3.8E-07 8.3E-12 101.9 27.2 49 360-408 118-168 (392)
52 PRK07333 2-octaprenyl-6-methox 98.9 1.6E-07 3.4E-12 105.2 24.1 48 360-407 116-165 (403)
53 COG0654 UbiH 2-polyprenyl-6-me 98.9 6.5E-07 1.4E-11 100.0 28.6 51 360-410 109-163 (387)
54 PRK07494 2-octaprenyl-6-methox 98.9 7E-08 1.5E-12 107.6 20.7 37 161-197 6-42 (388)
55 PRK11728 hydroxyglutarate oxid 98.9 1E-08 2.2E-13 114.7 13.4 41 162-202 2-44 (393)
56 PRK08020 ubiF 2-octaprenyl-3-m 98.9 3.1E-07 6.8E-12 102.5 25.4 50 360-409 117-169 (391)
57 TIGR01984 UbiH 2-polyprenyl-6- 98.9 2.9E-07 6.3E-12 102.3 24.6 49 360-408 110-161 (382)
58 TIGR01377 soxA_mon sarcosine o 98.9 1.8E-08 3.9E-13 111.9 13.9 50 359-408 149-199 (380)
59 PRK09126 hypothetical protein; 98.9 9.4E-08 2E-12 106.7 18.8 49 360-408 115-166 (392)
60 PRK08013 oxidoreductase; Provi 98.8 1E-06 2.2E-11 98.8 27.1 50 360-409 116-168 (400)
61 PRK05714 2-octaprenyl-3-methyl 98.8 6.4E-07 1.4E-11 100.6 25.3 50 360-409 117-168 (405)
62 TIGR03329 Phn_aa_oxid putative 98.8 7.1E-08 1.5E-12 110.2 17.5 39 160-199 22-62 (460)
63 PRK08244 hypothetical protein; 98.8 1.2E-06 2.7E-11 100.9 27.6 36 162-197 2-37 (493)
64 COG1635 THI4 Ribulose 1,5-bisp 98.8 5E-09 1.1E-13 103.7 6.5 69 162-244 30-99 (262)
65 PRK06184 hypothetical protein; 98.8 1.1E-06 2.4E-11 101.6 26.9 37 161-197 2-38 (502)
66 PRK12409 D-amino acid dehydrog 98.8 7.5E-08 1.6E-12 108.2 16.8 39 163-201 2-40 (410)
67 PRK06834 hypothetical protein; 98.8 1.1E-06 2.5E-11 100.9 26.4 41 368-408 114-155 (488)
68 PRK00711 D-amino acid dehydrog 98.8 3E-07 6.5E-12 103.5 19.4 40 163-202 1-40 (416)
69 PRK08850 2-octaprenyl-6-methox 98.8 1.6E-06 3.4E-11 97.5 24.9 49 360-408 116-167 (405)
70 PRK05732 2-octaprenyl-6-methox 98.8 2.7E-06 5.9E-11 95.0 26.4 49 360-408 117-168 (395)
71 PRK08849 2-octaprenyl-3-methyl 98.7 2E-06 4.4E-11 95.9 24.9 49 361-409 116-167 (384)
72 PRK07608 ubiquinone biosynthes 98.7 2.9E-06 6.3E-11 94.5 25.8 37 162-198 5-41 (388)
73 PRK08132 FAD-dependent oxidore 98.7 5.1E-06 1.1E-10 97.2 28.8 38 160-197 21-58 (547)
74 PRK07045 putative monooxygenas 98.7 2.7E-06 5.9E-11 94.9 25.2 37 161-197 4-40 (388)
75 PRK07190 hypothetical protein; 98.7 4.9E-06 1.1E-10 95.6 27.8 42 368-409 123-165 (487)
76 PLN02172 flavin-containing mon 98.7 1E-07 2.2E-12 108.5 13.6 43 160-202 8-50 (461)
77 PRK07236 hypothetical protein; 98.7 2.3E-07 5E-12 103.5 16.2 37 160-196 4-40 (386)
78 PRK06185 hypothetical protein; 98.7 5.2E-06 1.1E-10 93.2 27.0 36 161-196 5-40 (407)
79 TIGR02023 BchP-ChlP geranylger 98.7 3.3E-06 7.1E-11 94.4 24.7 32 163-194 1-32 (388)
80 PF13738 Pyr_redox_3: Pyridine 98.7 5.2E-08 1.1E-12 98.2 9.2 38 166-203 1-39 (203)
81 PF01494 FAD_binding_3: FAD bi 98.7 5.2E-08 1.1E-12 106.2 9.4 36 163-198 2-37 (356)
82 PRK08243 4-hydroxybenzoate 3-m 98.7 5.7E-06 1.2E-10 92.5 25.8 35 162-196 2-36 (392)
83 TIGR00275 flavoprotein, HI0933 98.7 3.5E-07 7.6E-12 102.5 16.0 50 358-407 104-158 (400)
84 PLN02463 lycopene beta cyclase 98.7 1.8E-05 3.9E-10 89.8 29.0 37 160-196 26-62 (447)
85 PTZ00383 malate:quinone oxidor 98.6 4.3E-07 9.2E-12 104.0 15.9 39 161-199 44-84 (497)
86 COG1148 HdrA Heterodisulfide r 98.6 2.7E-08 5.9E-13 108.3 5.6 90 92-204 73-166 (622)
87 PRK06126 hypothetical protein; 98.6 7.6E-06 1.6E-10 95.7 26.2 36 161-196 6-41 (545)
88 PF05834 Lycopene_cycl: Lycope 98.6 1.6E-05 3.4E-10 88.5 27.4 196 359-602 91-290 (374)
89 TIGR00292 thiazole biosynthesi 98.6 4.4E-07 9.6E-12 95.2 14.2 42 161-202 20-61 (254)
90 PRK11445 putative oxidoreducta 98.6 1.5E-05 3.3E-10 87.7 27.0 35 162-197 1-35 (351)
91 TIGR01373 soxB sarcosine oxida 98.6 9.1E-07 2E-11 99.4 17.6 38 161-199 29-68 (407)
92 PRK07588 hypothetical protein; 98.6 3.3E-07 7.1E-12 102.4 13.8 48 362-409 110-158 (391)
93 PF01946 Thi4: Thi4 family; PD 98.6 2.1E-08 4.6E-13 100.0 3.6 69 162-244 17-86 (230)
94 PRK06753 hypothetical protein; 98.6 3.4E-07 7.3E-12 101.5 13.5 36 163-198 1-36 (373)
95 PRK06996 hypothetical protein; 98.6 1.5E-05 3.2E-10 89.4 26.8 47 360-406 120-171 (398)
96 PRK05868 hypothetical protein; 98.6 4.8E-07 1E-11 100.5 14.6 43 366-408 116-159 (372)
97 PRK06847 hypothetical protein; 98.6 4.1E-07 8.9E-12 100.8 13.6 41 368-408 121-162 (375)
98 TIGR03364 HpnW_proposed FAD de 98.6 1.1E-06 2.4E-11 97.1 16.4 34 163-196 1-34 (365)
99 PRK13339 malate:quinone oxidor 98.6 7.1E-07 1.5E-11 102.0 14.5 42 161-202 5-48 (497)
100 PRK06617 2-octaprenyl-6-methox 98.5 3.2E-05 7E-10 85.9 27.0 49 360-408 109-159 (374)
101 TIGR01989 COQ6 Ubiquinone bios 98.5 1.1E-05 2.4E-10 91.7 23.5 33 163-195 1-37 (437)
102 PRK05945 sdhA succinate dehydr 98.5 5.5E-05 1.2E-09 88.9 28.5 38 162-199 3-42 (575)
103 PRK08163 salicylate hydroxylas 98.5 7.8E-07 1.7E-11 99.4 12.2 37 162-198 4-40 (396)
104 TIGR01320 mal_quin_oxido malat 98.5 1.1E-06 2.5E-11 100.6 13.7 40 163-202 1-42 (483)
105 TIGR03219 salicylate_mono sali 98.5 1.8E-06 3.9E-11 97.2 14.9 50 360-409 106-159 (414)
106 PRK08294 phenol 2-monooxygenas 98.5 4.9E-05 1.1E-09 90.1 27.5 36 161-196 31-67 (634)
107 PRK12831 putative oxidoreducta 98.5 1.7E-07 3.6E-12 107.1 6.3 98 91-202 81-180 (464)
108 PRK08274 tricarballylate dehyd 98.5 5.7E-06 1.2E-10 94.8 18.3 40 161-200 3-44 (466)
109 COG0665 DadA Glycine/D-amino a 98.4 1.6E-06 3.5E-11 96.3 13.4 38 161-198 3-40 (387)
110 PRK12266 glpD glycerol-3-phosp 98.4 0.00015 3.2E-09 84.0 29.9 40 161-200 5-44 (508)
111 PRK05257 malate:quinone oxidor 98.4 2.5E-06 5.4E-11 98.0 15.0 42 161-202 4-47 (494)
112 PRK06481 fumarate reductase fl 98.4 4.8E-06 1E-10 96.3 17.5 41 161-201 60-100 (506)
113 PF00743 FMO-like: Flavin-bind 98.4 5.8E-07 1.3E-11 103.8 9.6 40 163-202 2-41 (531)
114 KOG1399 Flavin-containing mono 98.4 1.6E-06 3.5E-11 97.4 12.9 42 161-202 5-46 (448)
115 PLN02697 lycopene epsilon cycl 98.4 0.00017 3.6E-09 83.4 29.4 36 160-195 106-141 (529)
116 TIGR01813 flavo_cyto_c flavocy 98.4 6.4E-06 1.4E-10 93.6 17.1 38 164-201 1-39 (439)
117 PRK06183 mhpA 3-(3-hydroxyphen 98.4 2.2E-06 4.7E-11 100.0 13.5 39 160-198 8-46 (538)
118 PRK07803 sdhA succinate dehydr 98.4 0.0002 4.2E-09 85.0 30.1 39 161-199 7-45 (626)
119 PLN02464 glycerol-3-phosphate 98.4 2.8E-05 6E-10 92.1 22.1 39 161-199 70-108 (627)
120 PRK06475 salicylate hydroxylas 98.4 4.8E-06 1E-10 93.4 14.6 36 162-197 2-37 (400)
121 TIGR03315 Se_ygfK putative sel 98.3 5.7E-07 1.2E-11 109.6 6.4 100 91-202 478-577 (1012)
122 PRK07121 hypothetical protein; 98.3 2.5E-05 5.4E-10 90.2 19.6 41 161-201 19-59 (492)
123 PF00890 FAD_binding_2: FAD bi 98.3 3.8E-06 8.3E-11 94.6 12.7 36 164-199 1-36 (417)
124 PRK09897 hypothetical protein; 98.3 5.8E-06 1.3E-10 95.4 13.8 41 163-203 2-45 (534)
125 PRK12779 putative bifunctional 98.3 8.1E-07 1.7E-11 109.0 6.5 105 91-202 241-346 (944)
126 PRK12845 3-ketosteroid-delta-1 98.3 2.6E-05 5.7E-10 91.1 18.5 42 159-201 13-54 (564)
127 COG0578 GlpA Glycerol-3-phosph 98.2 0.00017 3.8E-09 82.0 23.4 41 161-201 11-51 (532)
128 PF00996 GDI: GDP dissociation 98.2 2.5E-05 5.4E-10 87.5 16.3 234 161-404 3-284 (438)
129 PRK11101 glpA sn-glycerol-3-ph 98.2 1.7E-05 3.6E-10 92.6 15.6 36 161-196 5-40 (546)
130 PRK09853 putative selenate red 98.2 1.2E-06 2.6E-11 106.3 6.3 100 92-203 481-580 (1019)
131 COG0493 GltD NADPH-dependent g 98.2 2.9E-06 6.3E-11 95.8 8.7 97 98-202 54-163 (457)
132 KOG2820 FAD-dependent oxidored 98.2 1.6E-05 3.5E-10 83.8 13.3 39 160-198 5-43 (399)
133 PRK12775 putative trifunctiona 98.2 1.3E-06 2.8E-11 108.2 6.0 96 92-202 373-470 (1006)
134 PRK06567 putative bifunctional 98.2 1.2E-06 2.7E-11 105.0 5.6 43 158-200 379-421 (1028)
135 PRK12810 gltD glutamate syntha 98.2 1.8E-06 3.8E-11 99.0 6.5 99 91-202 85-183 (471)
136 PF13454 NAD_binding_9: FAD-NA 98.2 1.6E-05 3.4E-10 77.2 12.0 47 360-406 106-154 (156)
137 KOG0399 Glutamate synthase [Am 98.2 1E-06 2.2E-11 103.2 4.0 97 97-201 1717-1824(2142)
138 PLN02927 antheraxanthin epoxid 98.2 1.8E-05 4E-10 93.0 14.3 51 359-409 194-248 (668)
139 PRK12842 putative succinate de 98.2 4.9E-05 1.1E-09 89.3 18.0 42 161-202 8-49 (574)
140 PRK12769 putative oxidoreducta 98.2 2.1E-06 4.6E-11 102.4 6.4 67 128-202 301-367 (654)
141 TIGR01316 gltA glutamate synth 98.2 2.3E-06 5.1E-11 97.4 6.2 99 91-202 69-173 (449)
142 TIGR01318 gltD_gamma_fam gluta 98.1 2.9E-06 6.3E-11 97.1 6.5 99 91-202 81-181 (467)
143 PRK12809 putative oxidoreducta 98.1 2.6E-06 5.6E-11 101.3 6.2 67 128-202 284-350 (639)
144 PRK07573 sdhA succinate dehydr 98.1 3.1E-05 6.8E-10 91.8 15.3 38 161-198 34-71 (640)
145 PRK06175 L-aspartate oxidase; 98.1 8.5E-05 1.9E-09 84.2 17.7 38 162-200 4-41 (433)
146 PRK04176 ribulose-1,5-biphosph 98.1 3E-06 6.5E-11 89.1 5.5 41 161-201 24-64 (257)
147 PRK06134 putative FAD-binding 98.1 5.4E-05 1.2E-09 89.1 15.9 43 160-202 10-52 (581)
148 TIGR01317 GOGAT_sm_gam glutama 98.1 5.7E-06 1.2E-10 95.1 6.9 99 91-202 85-183 (485)
149 PRK12778 putative bifunctional 98.0 5.2E-06 1.1E-10 100.6 6.6 67 128-202 405-471 (752)
150 TIGR02485 CobZ_N-term precorri 98.0 0.00012 2.7E-09 82.9 15.9 30 167-196 1-30 (432)
151 TIGR00551 nadB L-aspartate oxi 98.0 0.0002 4.3E-09 82.6 17.8 38 162-200 2-39 (488)
152 PF07156 Prenylcys_lyase: Pren 98.0 0.001 2.2E-08 73.4 22.2 73 348-421 117-201 (368)
153 COG2072 TrkA Predicted flavopr 98.0 9.4E-06 2E-10 92.1 6.4 49 160-208 6-55 (443)
154 PLN02661 Putative thiazole syn 97.9 1.7E-05 3.6E-10 86.1 7.4 42 161-202 91-133 (357)
155 PRK12771 putative glutamate sy 97.9 1.2E-05 2.6E-10 94.3 6.7 98 91-202 80-177 (564)
156 PRK07804 L-aspartate oxidase; 97.9 0.00017 3.7E-09 84.1 16.0 40 160-199 14-53 (541)
157 PRK11749 dihydropyrimidine deh 97.9 1.2E-05 2.5E-10 92.0 6.2 42 160-201 138-179 (457)
158 PF06100 Strep_67kDa_ant: Stre 97.9 0.00033 7.1E-09 78.5 17.0 71 162-236 2-76 (500)
159 PLN02852 ferredoxin-NADP+ redu 97.9 1.3E-05 2.9E-10 91.4 6.3 43 160-202 24-68 (491)
160 PRK06854 adenylylsulfate reduc 97.9 0.0003 6.5E-09 83.2 17.6 38 161-198 10-49 (608)
161 PRK12814 putative NADPH-depend 97.9 8.9E-06 1.9E-10 96.8 4.6 43 160-202 191-233 (652)
162 PRK05249 soluble pyridine nucl 97.9 1.2E-05 2.6E-10 92.0 5.4 42 161-202 4-45 (461)
163 PRK06115 dihydrolipoamide dehy 97.8 1.5E-05 3.2E-10 91.3 5.1 41 161-201 2-42 (466)
164 TIGR01292 TRX_reduct thioredox 97.8 1.8E-05 3.9E-10 84.5 5.3 39 163-202 1-39 (300)
165 PRK08071 L-aspartate oxidase; 97.8 0.00012 2.5E-09 84.9 12.4 38 162-200 3-40 (510)
166 TIGR01350 lipoamide_DH dihydro 97.8 2.1E-05 4.5E-10 90.0 5.7 40 162-202 1-40 (461)
167 TIGR02360 pbenz_hydroxyl 4-hyd 97.8 3.2E-05 7E-10 86.5 6.8 35 162-196 2-36 (390)
168 PRK07251 pyridine nucleotide-d 97.8 2.3E-05 5E-10 89.0 5.4 41 161-201 2-43 (438)
169 PTZ00188 adrenodoxin reductase 97.8 3E-05 6.5E-10 87.5 6.0 44 160-203 37-81 (506)
170 PRK13984 putative oxidoreducta 97.8 3E-05 6.6E-10 91.7 6.0 98 93-202 226-323 (604)
171 PRK08010 pyridine nucleotide-d 97.8 3E-05 6.4E-10 88.2 5.7 42 161-202 2-44 (441)
172 TIGR01421 gluta_reduc_1 glutat 97.7 2.9E-05 6.2E-10 88.6 5.3 40 162-202 2-41 (450)
173 PF12831 FAD_oxidored: FAD dep 97.7 2.2E-05 4.8E-10 88.9 4.3 39 164-202 1-39 (428)
174 TIGR01424 gluta_reduc_2 glutat 97.7 2.7E-05 5.9E-10 88.7 5.0 40 162-202 2-41 (446)
175 COG2509 Uncharacterized FAD-de 97.7 0.0019 4.1E-08 71.2 18.6 48 360-407 178-228 (486)
176 PRK06292 dihydrolipoamide dehy 97.7 3.9E-05 8.4E-10 87.7 5.5 40 161-201 2-41 (460)
177 PF06039 Mqo: Malate:quinone o 97.7 0.00055 1.2E-08 75.9 14.0 41 161-201 2-44 (488)
178 PRK06416 dihydrolipoamide dehy 97.7 4.1E-05 8.9E-10 87.6 5.3 41 161-202 3-43 (462)
179 TIGR01790 carotene-cycl lycope 97.7 4.1E-05 9E-10 85.3 5.2 36 164-199 1-36 (388)
180 PRK06116 glutathione reductase 97.7 3.9E-05 8.5E-10 87.5 5.0 39 162-201 4-42 (450)
181 TIGR02028 ChlP geranylgeranyl 97.7 4.4E-05 9.6E-10 85.6 5.3 36 163-198 1-36 (398)
182 KOG2404 Fumarate reductase, fl 97.7 0.00083 1.8E-08 70.5 14.0 39 164-202 11-49 (477)
183 PLN00093 geranylgeranyl diphos 97.7 5.5E-05 1.2E-09 86.1 5.9 36 160-195 37-72 (450)
184 PRK06370 mercuric reductase; V 97.6 5.6E-05 1.2E-09 86.5 5.5 40 161-201 4-43 (463)
185 PRK06467 dihydrolipoamide dehy 97.6 5.5E-05 1.2E-09 86.8 5.5 41 161-201 3-43 (471)
186 TIGR03143 AhpF_homolog putativ 97.6 5.5E-05 1.2E-09 88.5 5.6 40 162-202 4-43 (555)
187 PLN02985 squalene monooxygenas 97.6 0.00016 3.4E-09 83.8 9.2 37 160-196 41-77 (514)
188 PRK05976 dihydrolipoamide dehy 97.6 5.6E-05 1.2E-09 86.8 5.4 41 161-202 3-43 (472)
189 PRK07512 L-aspartate oxidase; 97.6 0.00084 1.8E-08 77.9 15.1 33 162-196 9-41 (513)
190 PRK07538 hypothetical protein; 97.6 5.5E-05 1.2E-09 85.2 4.9 35 163-197 1-35 (413)
191 PRK13369 glycerol-3-phosphate 97.6 6.6E-05 1.4E-09 86.8 5.5 38 161-198 5-42 (502)
192 PRK07818 dihydrolipoamide dehy 97.6 7.5E-05 1.6E-09 85.6 5.6 40 162-202 4-43 (466)
193 PRK10262 thioredoxin reductase 97.6 6.8E-05 1.5E-09 81.5 5.0 41 161-202 5-45 (321)
194 KOG2415 Electron transfer flav 97.6 7.4E-05 1.6E-09 80.5 4.9 44 160-203 74-123 (621)
195 KOG2614 Kynurenine 3-monooxyge 97.6 7.4E-05 1.6E-09 81.2 4.9 36 162-197 2-37 (420)
196 PRK14694 putative mercuric red 97.5 8.7E-05 1.9E-09 85.1 5.4 42 160-202 4-45 (468)
197 TIGR02053 MerA mercuric reduct 97.5 8.8E-05 1.9E-09 84.9 5.3 38 163-201 1-38 (463)
198 COG0492 TrxB Thioredoxin reduc 97.5 9.4E-05 2E-09 79.6 4.8 41 161-202 2-43 (305)
199 PRK12834 putative FAD-binding 97.5 0.00011 2.4E-09 85.9 5.6 40 162-201 4-45 (549)
200 PTZ00058 glutathione reductase 97.5 0.00014 3.1E-09 84.8 6.4 42 160-202 46-87 (561)
201 TIGR01372 soxA sarcosine oxida 97.5 0.00012 2.6E-09 91.2 6.0 43 161-203 162-204 (985)
202 PRK12837 3-ketosteroid-delta-1 97.5 0.00011 2.4E-09 85.1 5.5 40 161-201 6-45 (513)
203 PRK05335 tRNA (uracil-5-)-meth 97.5 0.00013 2.7E-09 81.3 5.2 37 162-198 2-38 (436)
204 PRK14727 putative mercuric red 97.5 0.00013 2.9E-09 83.8 5.6 43 160-202 14-56 (479)
205 PRK13748 putative mercuric red 97.4 0.00012 2.7E-09 85.8 5.1 41 161-202 97-137 (561)
206 PRK08641 sdhA succinate dehydr 97.4 0.00016 3.4E-09 85.3 5.4 40 161-200 2-41 (589)
207 TIGR01789 lycopene_cycl lycope 97.4 0.00016 3.5E-09 80.3 5.1 37 164-200 1-39 (370)
208 PRK15317 alkyl hydroperoxide r 97.4 0.00017 3.7E-09 83.8 5.3 41 160-202 209-249 (517)
209 PRK06327 dihydrolipoamide dehy 97.4 0.00019 4.1E-09 82.5 5.5 32 162-193 4-35 (475)
210 PRK05192 tRNA uridine 5-carbox 97.4 0.00019 4.1E-09 83.4 5.4 40 161-200 3-43 (618)
211 PRK12835 3-ketosteroid-delta-1 97.4 0.00018 3.9E-09 84.6 5.4 40 161-200 10-49 (584)
212 TIGR03140 AhpF alkyl hydropero 97.4 0.00019 4E-09 83.4 5.4 40 160-201 210-249 (515)
213 PRK12839 hypothetical protein; 97.4 0.00021 4.6E-09 83.8 5.9 43 160-202 6-48 (572)
214 PTZ00052 thioredoxin reductase 97.4 0.00018 3.9E-09 83.1 5.1 32 162-193 5-36 (499)
215 KOG2844 Dimethylglycine dehydr 97.4 0.00085 1.8E-08 76.5 10.1 58 352-409 184-243 (856)
216 PRK12844 3-ketosteroid-delta-1 97.4 0.0002 4.3E-09 83.8 5.4 41 161-201 5-45 (557)
217 PTZ00367 squalene epoxidase; P 97.3 0.00024 5.1E-09 83.0 5.6 35 161-195 32-66 (567)
218 TIGR00137 gid_trmFO tRNA:m(5)U 97.3 0.00021 4.7E-09 79.9 4.8 36 164-199 2-37 (433)
219 PF04820 Trp_halogenase: Trypt 97.3 0.00018 4E-09 81.9 4.4 58 164-242 1-61 (454)
220 PF07992 Pyr_redox_2: Pyridine 97.3 0.00028 6.2E-09 70.6 5.1 33 164-196 1-33 (201)
221 PLN02507 glutathione reductase 97.3 0.00026 5.7E-09 81.7 5.3 33 161-193 24-56 (499)
222 PF00070 Pyr_redox: Pyridine n 97.3 0.00043 9.2E-09 59.0 5.2 35 164-198 1-35 (80)
223 PRK12770 putative glutamate sy 97.3 0.00041 8.9E-09 76.5 6.3 42 161-202 17-58 (352)
224 TIGR01812 sdhA_frdA_Gneg succi 97.2 0.00029 6.3E-09 82.8 5.1 37 164-200 1-37 (566)
225 PRK06452 sdhA succinate dehydr 97.2 0.00032 6.9E-09 82.3 5.2 39 161-199 4-42 (566)
226 COG1249 Lpd Pyruvate/2-oxoglut 97.2 0.00033 7.3E-09 79.2 5.1 42 161-202 3-44 (454)
227 PRK07843 3-ketosteroid-delta-1 97.2 0.00036 7.8E-09 81.7 5.5 41 161-201 6-46 (557)
228 PLN00128 Succinate dehydrogena 97.2 0.00034 7.3E-09 83.0 5.1 40 161-200 49-88 (635)
229 PRK07057 sdhA succinate dehydr 97.2 0.00036 7.9E-09 82.2 5.4 40 161-200 11-50 (591)
230 PRK08958 sdhA succinate dehydr 97.2 0.00035 7.6E-09 82.3 5.2 40 161-200 6-45 (588)
231 PTZ00139 Succinate dehydrogena 97.2 0.00036 7.9E-09 82.6 5.2 40 161-200 28-67 (617)
232 PRK08401 L-aspartate oxidase; 97.2 0.00043 9.2E-09 79.4 5.3 33 163-195 2-34 (466)
233 TIGR01423 trypano_reduc trypan 97.2 0.00045 9.7E-09 79.5 5.3 41 161-201 2-51 (486)
234 KOG2960 Protein involved in th 97.1 0.00017 3.7E-09 71.3 1.5 67 162-242 76-145 (328)
235 PLN02546 glutathione reductase 97.1 0.00047 1E-08 80.5 5.4 33 161-193 78-110 (558)
236 PRK07395 L-aspartate oxidase; 97.1 0.00041 8.8E-09 81.1 4.9 40 160-200 7-46 (553)
237 PRK09078 sdhA succinate dehydr 97.1 0.00044 9.5E-09 81.7 5.0 39 161-199 11-49 (598)
238 PLN02815 L-aspartate oxidase 97.1 0.00044 9.6E-09 81.3 4.9 39 161-200 28-66 (594)
239 PRK08626 fumarate reductase fl 97.1 0.00048 1E-08 82.1 5.0 38 162-199 5-42 (657)
240 PRK06069 sdhA succinate dehydr 97.1 0.0005 1.1E-08 81.0 5.0 39 162-200 5-46 (577)
241 PTZ00306 NADH-dependent fumara 97.0 0.00073 1.6E-08 85.6 6.3 41 161-201 408-448 (1167)
242 PRK12843 putative FAD-binding 97.0 0.00097 2.1E-08 78.5 6.8 43 160-202 14-56 (578)
243 PRK06912 acoL dihydrolipoamide 97.0 0.00065 1.4E-08 77.7 5.2 37 164-201 2-38 (458)
244 TIGR02462 pyranose_ox pyranose 97.0 0.00067 1.5E-08 78.4 5.2 37 163-199 1-37 (544)
245 PF00732 GMC_oxred_N: GMC oxid 97.0 0.00054 1.2E-08 73.4 3.9 36 163-198 1-37 (296)
246 PRK08255 salicylyl-CoA 5-hydro 97.0 0.00065 1.4E-08 82.6 5.0 34 163-196 1-36 (765)
247 KOG1800 Ferredoxin/adrenodoxin 97.0 0.00062 1.3E-08 73.1 4.1 44 160-203 18-63 (468)
248 COG3573 Predicted oxidoreducta 97.0 0.00097 2.1E-08 70.2 5.3 41 161-201 4-46 (552)
249 PF01134 GIDA: Glucose inhibit 97.0 0.00056 1.2E-08 75.5 3.8 39 164-202 1-40 (392)
250 PRK09231 fumarate reductase fl 97.0 0.00073 1.6E-08 79.6 4.8 38 162-199 4-43 (582)
251 PTZ00153 lipoamide dehydrogena 97.0 0.00081 1.8E-08 79.8 5.2 41 161-201 115-156 (659)
252 PRK07845 flavoprotein disulfid 96.9 0.00094 2E-08 76.6 5.4 39 163-202 2-40 (466)
253 PRK08275 putative oxidoreducta 96.9 0.00085 1.8E-08 78.6 5.0 38 161-198 8-47 (554)
254 TIGR01176 fum_red_Fp fumarate 96.9 0.00083 1.8E-08 79.0 4.9 40 162-201 3-44 (580)
255 PRK07251 pyridine nucleotide-d 96.9 0.01 2.2E-07 67.5 13.5 36 162-197 157-192 (438)
256 PRK06263 sdhA succinate dehydr 96.9 0.00083 1.8E-08 78.5 4.8 39 161-200 6-45 (543)
257 TIGR03197 MnmC_Cterm tRNA U-34 96.9 0.0041 8.9E-08 69.3 9.9 50 360-409 140-190 (381)
258 COG4716 Myosin-crossreactive a 96.9 0.0039 8.5E-08 66.7 8.9 48 157-204 17-68 (587)
259 TIGR01811 sdhA_Bsu succinate d 96.9 0.00083 1.8E-08 79.4 4.3 34 165-198 1-34 (603)
260 TIGR01438 TGR thioredoxin and 96.8 0.0012 2.6E-08 76.1 5.3 33 162-194 2-34 (484)
261 KOG2665 Predicted FAD-dependen 96.8 0.0082 1.8E-07 63.1 10.6 41 160-200 46-88 (453)
262 PRK09077 L-aspartate oxidase; 96.8 0.0012 2.5E-08 77.2 4.9 39 161-200 7-45 (536)
263 COG1053 SdhA Succinate dehydro 96.8 0.0014 3E-08 76.3 5.1 41 161-201 5-45 (562)
264 TIGR02061 aprA adenosine phosp 96.8 0.0014 3E-08 77.3 5.0 33 164-196 1-37 (614)
265 KOG1298 Squalene monooxygenase 96.7 0.0015 3.3E-08 70.2 4.6 37 160-196 43-79 (509)
266 PRK08205 sdhA succinate dehydr 96.7 0.0014 3.1E-08 77.2 4.9 37 162-199 5-41 (583)
267 PRK04965 NADH:flavorubredoxin 96.7 0.0098 2.1E-07 66.2 11.3 36 162-197 141-176 (377)
268 PRK05329 anaerobic glycerol-3- 96.7 0.0016 3.5E-08 73.3 4.9 34 162-195 2-35 (422)
269 COG3075 GlpB Anaerobic glycero 96.7 0.0016 3.4E-08 68.9 4.4 33 162-194 2-34 (421)
270 PRK02106 choline dehydrogenase 96.6 0.0023 4.9E-08 75.2 5.2 36 161-196 4-40 (560)
271 KOG1335 Dihydrolipoamide dehyd 96.6 0.0023 5.1E-08 68.8 4.6 42 161-202 38-79 (506)
272 TIGR01350 lipoamide_DH dihydro 96.5 0.019 4.1E-07 65.7 12.0 36 162-197 170-205 (461)
273 PRK09754 phenylpropionate diox 96.5 0.0032 7E-08 70.6 5.3 38 161-198 2-41 (396)
274 KOG1439 RAB proteins geranylge 96.5 0.076 1.6E-06 57.9 15.2 45 162-206 4-48 (440)
275 PRK05249 soluble pyridine nucl 96.4 0.022 4.7E-07 65.2 11.6 36 162-197 175-210 (461)
276 PRK09564 coenzyme A disulfide 96.4 0.0032 6.8E-08 71.7 4.6 36 163-198 1-38 (444)
277 PRK13800 putative oxidoreducta 96.4 0.0035 7.5E-08 77.6 5.1 36 161-196 12-47 (897)
278 PRK06416 dihydrolipoamide dehy 96.4 0.026 5.6E-07 64.7 12.0 36 162-197 172-207 (462)
279 KOG2853 Possible oxidoreductas 96.3 0.0035 7.5E-08 66.4 4.2 36 161-196 85-124 (509)
280 PRK13512 coenzyme A disulfide 96.3 0.0039 8.4E-08 71.0 4.9 36 163-198 2-39 (438)
281 TIGR00136 gidA glucose-inhibit 96.2 0.005 1.1E-07 71.7 5.1 38 163-200 1-38 (617)
282 PF13434 K_oxygenase: L-lysine 96.2 0.013 2.8E-07 64.3 8.1 36 162-197 2-38 (341)
283 KOG2852 Possible oxidoreductas 96.2 0.0022 4.8E-08 66.5 1.9 41 160-200 8-54 (380)
284 COG1206 Gid NAD(FAD)-utilizing 96.1 0.0047 1E-07 65.3 3.8 37 162-198 3-39 (439)
285 PRK07846 mycothione reductase; 96.1 0.0059 1.3E-07 69.7 4.9 36 163-201 2-37 (451)
286 COG5044 MRS6 RAB proteins gera 96.1 0.12 2.6E-06 55.9 14.0 46 161-206 5-50 (434)
287 TIGR03452 mycothione_red mycot 96.1 0.0065 1.4E-07 69.4 5.1 37 162-201 2-38 (452)
288 PRK06116 glutathione reductase 96.1 0.044 9.5E-07 62.5 11.7 35 162-196 167-201 (450)
289 COG0446 HcaD Uncharacterized N 96.0 0.0064 1.4E-07 67.8 4.8 40 162-201 136-175 (415)
290 TIGR03378 glycerol3P_GlpB glyc 96.0 0.0066 1.4E-07 67.9 4.7 33 163-195 1-33 (419)
291 TIGR01810 betA choline dehydro 96.0 0.0061 1.3E-07 71.1 4.3 33 164-196 1-34 (532)
292 PTZ00318 NADH dehydrogenase-li 95.9 0.0082 1.8E-07 68.0 4.9 37 160-196 8-44 (424)
293 PRK08010 pyridine nucleotide-d 95.9 0.064 1.4E-06 61.0 12.0 36 162-197 158-193 (441)
294 PRK14727 putative mercuric red 95.8 0.063 1.4E-06 61.8 11.6 40 368-407 242-281 (479)
295 COG2303 BetA Choline dehydroge 95.8 0.0088 1.9E-07 69.8 4.5 36 160-195 5-40 (542)
296 PLN02507 glutathione reductase 95.8 0.063 1.4E-06 62.2 11.6 35 162-196 203-237 (499)
297 PRK14694 putative mercuric red 95.7 0.069 1.5E-06 61.3 11.6 39 368-406 232-270 (468)
298 COG4529 Uncharacterized protei 95.1 0.026 5.7E-07 63.2 5.0 39 162-200 1-42 (474)
299 COG0029 NadB Aspartate oxidase 95.0 0.018 3.9E-07 64.5 3.3 32 164-196 9-40 (518)
300 PLN02785 Protein HOTHEAD 94.8 0.027 5.9E-07 66.3 4.6 34 161-195 54-87 (587)
301 TIGR03169 Nterm_to_SelD pyridi 94.8 0.029 6.3E-07 62.0 4.6 33 164-196 1-36 (364)
302 PRK04965 NADH:flavorubredoxin 94.6 0.039 8.5E-07 61.4 5.0 33 163-195 3-37 (377)
303 PRK01438 murD UDP-N-acetylmura 94.6 0.04 8.8E-07 63.4 5.2 36 161-196 15-50 (480)
304 PRK09754 phenylpropionate diox 94.5 0.044 9.5E-07 61.4 5.1 37 162-198 144-180 (396)
305 COG1252 Ndh NADH dehydrogenase 94.4 0.047 1E-06 60.8 5.0 36 161-196 2-39 (405)
306 PF01210 NAD_Gly3P_dh_N: NAD-d 94.3 0.052 1.1E-06 52.6 4.6 32 164-195 1-32 (157)
307 TIGR02352 thiamin_ThiO glycine 94.3 1.1 2.4E-05 48.4 15.6 53 358-410 140-194 (337)
308 PRK14989 nitrite reductase sub 94.1 0.058 1.3E-06 66.2 5.4 37 162-198 3-43 (847)
309 PRK02705 murD UDP-N-acetylmura 94.1 0.055 1.2E-06 61.9 4.9 34 164-197 2-35 (459)
310 COG3634 AhpF Alkyl hydroperoxi 94.1 0.032 6.9E-07 59.5 2.5 40 160-201 209-248 (520)
311 PF02737 3HCDH_N: 3-hydroxyacy 93.7 0.086 1.9E-06 52.4 4.7 32 164-195 1-32 (180)
312 KOG0405 Pyridine nucleotide-di 93.6 0.11 2.4E-06 55.7 5.5 43 160-202 18-60 (478)
313 PRK05976 dihydrolipoamide dehy 93.5 0.087 1.9E-06 60.6 5.0 36 162-197 180-215 (472)
314 COG0445 GidA Flavin-dependent 93.4 0.068 1.5E-06 60.6 3.8 34 161-194 3-36 (621)
315 COG1249 Lpd Pyruvate/2-oxoglut 93.4 0.099 2.2E-06 59.5 5.1 37 162-198 173-209 (454)
316 PF03721 UDPG_MGDP_dh_N: UDP-g 93.3 0.098 2.1E-06 52.3 4.4 33 163-195 1-33 (185)
317 TIGR02053 MerA mercuric reduct 92.8 0.12 2.6E-06 59.2 4.8 36 162-197 166-201 (463)
318 KOG4716 Thioredoxin reductase 92.8 0.1 2.2E-06 55.6 3.8 34 160-193 17-50 (503)
319 KOG3923 D-aspartate oxidase [A 92.8 0.096 2.1E-06 55.1 3.5 35 161-195 2-43 (342)
320 TIGR02374 nitri_red_nirB nitri 92.8 0.1 2.3E-06 63.7 4.5 46 361-406 188-235 (785)
321 PRK06370 mercuric reductase; V 92.8 0.15 3.1E-06 58.6 5.4 37 162-198 171-207 (463)
322 PRK06115 dihydrolipoamide dehy 92.8 0.14 3E-06 58.8 5.3 36 162-197 174-209 (466)
323 TIGR01421 gluta_reduc_1 glutat 92.7 0.14 3E-06 58.6 5.0 37 162-198 166-202 (450)
324 PRK07846 mycothione reductase; 92.6 0.15 3.2E-06 58.4 5.2 36 162-197 166-201 (451)
325 PRK06467 dihydrolipoamide dehy 92.6 0.14 3.1E-06 58.8 5.0 37 162-198 174-210 (471)
326 PRK06912 acoL dihydrolipoamide 92.6 0.15 3.2E-06 58.4 5.2 36 162-197 170-205 (458)
327 PRK14106 murD UDP-N-acetylmura 92.6 0.15 3.2E-06 58.2 5.2 35 161-195 4-38 (450)
328 PF13738 Pyr_redox_3: Pyridine 92.6 0.14 3.1E-06 51.1 4.5 35 161-195 166-200 (203)
329 PF01262 AlaDh_PNT_C: Alanine 92.5 0.17 3.7E-06 49.6 4.8 35 161-195 19-53 (168)
330 PRK06129 3-hydroxyacyl-CoA deh 92.5 0.13 2.9E-06 55.5 4.4 33 163-195 3-35 (308)
331 PRK06292 dihydrolipoamide dehy 92.4 0.16 3.5E-06 58.1 5.2 37 162-198 169-205 (460)
332 KOG0404 Thioredoxin reductase 92.4 0.29 6.4E-06 49.4 6.2 44 162-205 8-55 (322)
333 PRK07818 dihydrolipoamide dehy 92.4 0.16 3.5E-06 58.3 5.1 36 162-197 172-207 (466)
334 TIGR03385 CoA_CoA_reduc CoA-di 92.2 0.18 3.9E-06 57.1 5.1 36 162-197 137-172 (427)
335 PF02558 ApbA: Ketopantoate re 92.2 0.2 4.3E-06 47.8 4.7 31 165-195 1-31 (151)
336 PRK13512 coenzyme A disulfide 92.2 0.17 3.6E-06 57.6 4.9 37 162-198 148-184 (438)
337 COG0686 Ald Alanine dehydrogen 92.1 0.16 3.5E-06 53.8 4.2 77 161-237 167-258 (371)
338 PRK06327 dihydrolipoamide dehy 92.1 0.19 4E-06 57.9 5.2 36 162-197 183-218 (475)
339 KOG1279 Chromatin remodeling f 91.9 0.24 5.1E-06 56.5 5.6 106 68-176 55-165 (506)
340 TIGR01470 cysG_Nterm siroheme 91.9 0.24 5.3E-06 50.3 5.2 35 161-195 8-42 (205)
341 COG3634 AhpF Alkyl hydroperoxi 91.9 0.17 3.6E-06 54.3 4.0 35 161-195 353-387 (520)
342 PRK07066 3-hydroxybutyryl-CoA 91.6 0.2 4.4E-06 54.4 4.6 34 162-195 7-40 (321)
343 PRK08293 3-hydroxybutyryl-CoA 91.6 0.23 5E-06 53.1 4.9 33 163-195 4-36 (287)
344 TIGR03452 mycothione_red mycot 91.5 0.22 4.8E-06 56.9 4.9 36 162-197 169-204 (452)
345 PRK07819 3-hydroxybutyryl-CoA 91.5 0.2 4.3E-06 53.7 4.3 33 163-195 6-38 (286)
346 PRK07845 flavoprotein disulfid 91.5 0.26 5.7E-06 56.5 5.6 37 162-198 177-213 (466)
347 COG0569 TrkA K+ transport syst 91.4 0.22 4.7E-06 51.4 4.3 66 163-241 1-66 (225)
348 TIGR02374 nitri_red_nirB nitri 91.4 0.23 5E-06 60.8 5.2 37 162-198 140-176 (785)
349 PRK09260 3-hydroxybutyryl-CoA 91.3 0.2 4.4E-06 53.6 4.2 33 163-195 2-34 (288)
350 PF13241 NAD_binding_7: Putati 91.2 0.19 4.1E-06 45.1 3.1 34 161-194 6-39 (103)
351 PRK07530 3-hydroxybutyryl-CoA 91.2 0.26 5.5E-06 52.9 4.7 34 162-195 4-37 (292)
352 TIGR03140 AhpF alkyl hydropero 91.0 0.25 5.5E-06 57.4 4.9 35 162-196 352-386 (515)
353 PRK09564 coenzyme A disulfide 90.9 0.28 6.1E-06 55.7 5.1 36 162-197 149-184 (444)
354 PRK06249 2-dehydropantoate 2-r 90.8 0.31 6.8E-06 52.8 5.1 35 161-195 4-38 (313)
355 TIGR01316 gltA glutamate synth 90.8 0.29 6.3E-06 55.9 5.0 34 162-195 272-305 (449)
356 PRK14989 nitrite reductase sub 90.7 0.29 6.3E-06 60.2 5.1 37 162-198 145-181 (847)
357 PTZ00058 glutathione reductase 90.6 0.29 6.3E-06 57.4 4.8 37 162-198 237-273 (561)
358 TIGR01424 gluta_reduc_2 glutat 90.4 0.33 7.2E-06 55.3 5.0 36 162-197 166-201 (446)
359 PRK06718 precorrin-2 dehydroge 90.4 0.42 9.1E-06 48.4 5.2 34 161-194 9-42 (202)
360 PF01488 Shikimate_DH: Shikima 90.3 0.43 9.3E-06 45.0 4.9 35 161-195 11-46 (135)
361 KOG3855 Monooxygenase involved 90.3 0.3 6.4E-06 53.7 4.1 36 160-195 34-73 (481)
362 PRK04148 hypothetical protein; 90.3 0.29 6.2E-06 46.1 3.5 34 162-196 17-50 (134)
363 PTZ00153 lipoamide dehydrogena 90.3 0.34 7.3E-06 57.9 5.0 37 162-198 312-348 (659)
364 TIGR03862 flavo_PP4765 unchara 90.3 1.2 2.5E-05 49.6 8.9 51 354-406 81-138 (376)
365 PRK06035 3-hydroxyacyl-CoA deh 90.2 0.32 6.9E-06 52.1 4.4 33 163-195 4-36 (291)
366 PRK10262 thioredoxin reductase 90.2 0.38 8.2E-06 52.2 5.0 35 162-196 146-180 (321)
367 PRK12831 putative oxidoreducta 90.1 0.36 7.8E-06 55.4 5.0 35 161-195 280-314 (464)
368 PRK15317 alkyl hydroperoxide r 90.0 0.35 7.5E-06 56.3 4.8 35 162-196 351-385 (517)
369 PRK11064 wecC UDP-N-acetyl-D-m 90.0 0.35 7.5E-06 54.7 4.7 34 162-195 3-36 (415)
370 PRK04690 murD UDP-N-acetylmura 89.9 0.38 8.3E-06 55.2 5.0 35 162-196 8-42 (468)
371 PRK06719 precorrin-2 dehydroge 89.8 0.52 1.1E-05 45.7 5.2 33 160-192 11-43 (157)
372 PRK05808 3-hydroxybutyryl-CoA 89.8 0.37 8E-06 51.4 4.5 33 163-195 4-36 (282)
373 cd01080 NAD_bind_m-THF_DH_Cycl 89.8 0.49 1.1E-05 46.5 5.0 35 160-194 42-77 (168)
374 TIGR03143 AhpF_homolog putativ 89.7 0.38 8.2E-06 56.5 4.8 37 161-197 142-178 (555)
375 PRK06522 2-dehydropantoate 2-r 89.6 0.4 8.6E-06 51.4 4.6 32 163-194 1-32 (304)
376 KOG4405 GDP dissociation inhib 89.3 0.47 1E-05 52.0 4.7 48 160-207 6-53 (547)
377 TIGR00518 alaDH alanine dehydr 89.1 0.51 1.1E-05 52.5 5.0 34 162-195 167-200 (370)
378 TIGR01292 TRX_reduct thioredox 89.0 0.51 1.1E-05 50.1 4.9 35 161-195 140-174 (300)
379 PRK05708 2-dehydropantoate 2-r 89.0 0.48 1E-05 51.2 4.6 33 162-194 2-34 (305)
380 KOG0042 Glycerol-3-phosphate d 88.9 0.21 4.6E-06 56.4 1.9 40 161-200 66-105 (680)
381 PRK12770 putative glutamate sy 88.9 0.47 1E-05 52.2 4.6 34 162-195 172-206 (352)
382 PRK12921 2-dehydropantoate 2-r 88.8 0.47 1E-05 51.0 4.4 31 163-193 1-31 (305)
383 PLN02545 3-hydroxybutyryl-CoA 88.8 0.52 1.1E-05 50.6 4.8 33 163-195 5-37 (295)
384 TIGR01423 trypano_reduc trypan 88.8 0.51 1.1E-05 54.5 5.0 37 162-198 187-226 (486)
385 COG0771 MurD UDP-N-acetylmuram 88.8 0.5 1.1E-05 53.4 4.7 36 162-197 7-42 (448)
386 PLN02546 glutathione reductase 88.8 0.53 1.2E-05 55.2 5.1 37 162-198 252-288 (558)
387 PRK01710 murD UDP-N-acetylmura 88.7 0.55 1.2E-05 53.8 5.1 34 162-195 14-47 (458)
388 PRK08229 2-dehydropantoate 2-r 88.6 0.53 1.1E-05 51.5 4.7 32 163-194 3-34 (341)
389 PRK03369 murD UDP-N-acetylmura 88.4 0.56 1.2E-05 54.2 5.0 33 162-194 12-44 (488)
390 PRK02472 murD UDP-N-acetylmura 88.3 0.59 1.3E-05 53.2 5.0 34 162-195 5-38 (447)
391 TIGR01763 MalateDH_bact malate 88.3 0.64 1.4E-05 50.2 5.0 33 163-195 2-35 (305)
392 PRK13748 putative mercuric red 88.2 0.63 1.4E-05 54.7 5.3 33 162-194 270-302 (561)
393 cd01075 NAD_bind_Leu_Phe_Val_D 88.2 0.9 1.9E-05 46.0 5.7 36 160-195 26-61 (200)
394 KOG2755 Oxidoreductase [Genera 88.1 0.35 7.7E-06 50.0 2.7 32 164-195 1-34 (334)
395 PRK06130 3-hydroxybutyryl-CoA 88.0 0.58 1.3E-05 50.6 4.5 33 163-195 5-37 (311)
396 PRK00421 murC UDP-N-acetylmura 87.9 0.63 1.4E-05 53.3 4.9 35 161-195 6-41 (461)
397 PRK04308 murD UDP-N-acetylmura 87.9 0.72 1.6E-05 52.6 5.4 35 162-196 5-39 (445)
398 TIGR02354 thiF_fam2 thiamine b 87.8 0.79 1.7E-05 46.4 5.0 34 161-194 20-54 (200)
399 COG1748 LYS9 Saccharopine dehy 87.7 0.89 1.9E-05 50.5 5.7 46 162-207 1-55 (389)
400 PRK09424 pntA NAD(P) transhydr 87.7 0.62 1.3E-05 53.7 4.7 35 161-195 164-198 (509)
401 cd05292 LDH_2 A subgroup of L- 87.7 0.68 1.5E-05 50.1 4.8 33 163-195 1-35 (308)
402 COG1004 Ugd Predicted UDP-gluc 87.5 0.62 1.3E-05 51.2 4.3 33 163-195 1-33 (414)
403 TIGR03026 NDP-sugDHase nucleot 87.5 0.58 1.3E-05 52.8 4.3 33 164-196 2-34 (411)
404 PRK14619 NAD(P)H-dependent gly 87.5 0.78 1.7E-05 49.6 5.1 35 161-195 3-37 (308)
405 PF03446 NAD_binding_2: NAD bi 87.4 0.78 1.7E-05 44.6 4.6 33 163-195 2-34 (163)
406 PRK01368 murD UDP-N-acetylmura 87.2 0.69 1.5E-05 52.9 4.7 32 162-194 6-37 (454)
407 cd00401 AdoHcyase S-adenosyl-L 87.2 0.79 1.7E-05 51.5 5.0 35 161-195 201-235 (413)
408 PRK14618 NAD(P)H-dependent gly 87.1 0.83 1.8E-05 49.8 5.1 34 162-195 4-37 (328)
409 KOG2311 NAD/FAD-utilizing prot 87.0 0.6 1.3E-05 52.2 3.8 39 160-198 26-65 (679)
410 TIGR02279 PaaC-3OHAcCoADH 3-hy 87.0 0.66 1.4E-05 53.7 4.4 34 162-195 5-38 (503)
411 PTZ00052 thioredoxin reductase 86.9 0.82 1.8E-05 53.0 5.2 31 163-193 183-213 (499)
412 PRK11749 dihydropyrimidine deh 86.8 0.82 1.8E-05 52.3 5.0 35 161-195 272-307 (457)
413 TIGR01438 TGR thioredoxin and 86.7 0.72 1.6E-05 53.3 4.5 31 163-193 181-211 (484)
414 PRK08306 dipicolinate synthase 86.6 0.93 2E-05 48.8 5.1 35 161-195 151-185 (296)
415 PRK08268 3-hydroxy-acyl-CoA de 86.4 0.74 1.6E-05 53.4 4.4 35 162-196 7-41 (507)
416 PRK12779 putative bifunctional 86.4 1.2 2.7E-05 55.4 6.6 35 161-195 446-480 (944)
417 PRK00094 gpsA NAD(P)H-dependen 86.3 0.93 2E-05 49.1 5.0 33 163-195 2-34 (325)
418 KOG1238 Glucose dehydrogenase/ 86.3 0.77 1.7E-05 53.4 4.4 38 160-197 55-93 (623)
419 PRK12549 shikimate 5-dehydroge 85.9 1.1 2.4E-05 47.9 5.2 34 162-195 127-161 (284)
420 PRK12778 putative bifunctional 85.7 0.85 1.8E-05 55.7 4.7 34 162-195 570-604 (752)
421 PRK07531 bifunctional 3-hydrox 85.7 0.85 1.8E-05 52.8 4.5 33 163-195 5-37 (495)
422 PTZ00318 NADH dehydrogenase-li 85.6 1 2.3E-05 50.9 5.1 35 163-197 174-222 (424)
423 TIGR02853 spore_dpaA dipicolin 85.4 1.1 2.3E-05 48.1 4.7 35 161-195 150-184 (287)
424 PRK11730 fadB multifunctional 85.1 0.85 1.8E-05 55.2 4.2 34 162-195 313-346 (715)
425 PRK00141 murD UDP-N-acetylmura 85.1 1.1 2.5E-05 51.4 5.1 33 162-194 15-47 (473)
426 PRK14620 NAD(P)H-dependent gly 85.0 1.1 2.4E-05 48.8 4.7 32 164-195 2-33 (326)
427 PRK07417 arogenate dehydrogena 85.0 1 2.2E-05 47.9 4.4 32 164-195 2-33 (279)
428 cd05191 NAD_bind_amino_acid_DH 84.9 1.8 3.8E-05 37.3 5.1 33 161-193 22-55 (86)
429 PRK02006 murD UDP-N-acetylmura 84.7 1.1 2.5E-05 51.8 4.9 34 162-195 7-40 (498)
430 cd05311 NAD_bind_2_malic_enz N 84.6 1.2 2.6E-05 45.9 4.6 34 161-194 24-60 (226)
431 PRK00683 murD UDP-N-acetylmura 84.5 1.1 2.5E-05 50.6 4.7 34 162-195 3-36 (418)
432 TIGR00561 pntA NAD(P) transhyd 84.4 1.2 2.6E-05 51.4 4.7 34 162-195 164-197 (511)
433 TIGR02437 FadB fatty oxidation 84.3 0.97 2.1E-05 54.7 4.2 35 161-195 312-346 (714)
434 TIGR00936 ahcY adenosylhomocys 83.9 1.4 3E-05 49.4 5.0 35 161-195 194-228 (406)
435 PTZ00082 L-lactate dehydrogena 83.8 1.6 3.4E-05 47.6 5.3 35 162-196 6-41 (321)
436 COG0281 SfcA Malic enzyme [Ene 83.8 4.1 8.9E-05 45.3 8.3 35 160-194 197-234 (432)
437 PF02254 TrkA_N: TrkA-N domain 83.7 1.7 3.7E-05 39.3 4.6 31 165-195 1-31 (116)
438 COG1250 FadB 3-hydroxyacyl-CoA 83.6 1.3 2.8E-05 47.7 4.3 33 162-194 3-35 (307)
439 PF00899 ThiF: ThiF family; I 83.4 1.3 2.7E-05 41.7 3.8 33 162-194 2-35 (135)
440 PRK06223 malate dehydrogenase; 83.4 1.6 3.4E-05 47.1 5.0 33 163-195 3-36 (307)
441 PRK15057 UDP-glucose 6-dehydro 83.4 1.3 2.8E-05 49.6 4.4 31 164-195 2-32 (388)
442 KOG1335 Dihydrolipoamide dehyd 83.0 0.68 1.5E-05 50.5 1.9 38 162-199 211-248 (506)
443 PRK01390 murD UDP-N-acetylmura 82.9 1.4 3.1E-05 50.4 4.7 33 162-194 9-41 (460)
444 TIGR02441 fa_ox_alpha_mit fatt 82.9 1.2 2.6E-05 54.0 4.2 35 161-195 334-368 (737)
445 TIGR00507 aroE shikimate 5-deh 82.8 1.7 3.8E-05 46.0 5.0 34 162-195 117-150 (270)
446 cd01078 NAD_bind_H4MPT_DH NADP 82.8 2 4.4E-05 42.9 5.2 34 161-194 27-61 (194)
447 cd05291 HicDH_like L-2-hydroxy 82.6 1.7 3.7E-05 47.0 4.9 32 164-195 2-35 (306)
448 COG1893 ApbA Ketopantoate redu 82.3 1.6 3.5E-05 47.2 4.5 33 163-195 1-33 (307)
449 PRK11199 tyrA bifunctional cho 82.2 3.6 7.9E-05 45.8 7.4 34 161-194 97-131 (374)
450 TIGR01915 npdG NADPH-dependent 82.1 1.8 3.9E-05 44.3 4.6 32 163-194 1-33 (219)
451 PLN02353 probable UDP-glucose 82.0 1.6 3.5E-05 50.1 4.6 33 163-195 2-36 (473)
452 cd01065 NAD_bind_Shikimate_DH 81.9 2.4 5.1E-05 40.4 5.1 35 161-195 18-53 (155)
453 TIGR01505 tartro_sem_red 2-hyd 81.8 1.5 3.3E-05 46.9 4.1 32 164-195 1-32 (291)
454 PRK12475 thiamine/molybdopteri 81.7 2 4.4E-05 47.1 5.1 35 161-195 23-58 (338)
455 PRK05476 S-adenosyl-L-homocyst 81.7 2 4.4E-05 48.4 5.2 35 161-195 211-245 (425)
456 PRK12548 shikimate 5-dehydroge 81.6 2 4.3E-05 46.1 4.9 35 161-195 125-160 (289)
457 KOG2304 3-hydroxyacyl-CoA dehy 81.6 1.6 3.4E-05 44.4 3.7 35 161-195 10-44 (298)
458 TIGR01318 gltD_gamma_fam gluta 81.6 2.8 6.1E-05 48.1 6.5 36 161-196 281-317 (467)
459 PRK03803 murD UDP-N-acetylmura 81.5 1.7 3.6E-05 49.7 4.5 34 162-195 6-39 (448)
460 PLN02172 flavin-containing mon 81.5 1.6 3.5E-05 50.0 4.4 35 161-195 203-237 (461)
461 PRK11154 fadJ multifunctional 81.4 1.4 3.1E-05 53.2 4.2 35 161-195 308-343 (708)
462 PF00670 AdoHcyase_NAD: S-aden 81.4 1.9 4.2E-05 41.8 4.2 35 161-195 22-56 (162)
463 TIGR02440 FadJ fatty oxidation 81.3 1.5 3.3E-05 52.9 4.3 35 161-195 303-338 (699)
464 PF00056 Ldh_1_N: lactate/mala 81.1 2.5 5.5E-05 40.1 4.9 33 163-195 1-36 (141)
465 PRK05562 precorrin-2 dehydroge 80.8 2.4 5.2E-05 43.6 4.9 34 160-193 23-56 (223)
466 TIGR02356 adenyl_thiF thiazole 80.7 2.6 5.6E-05 42.7 5.1 34 161-194 20-54 (202)
467 PRK12814 putative NADPH-depend 80.6 1.9 4E-05 51.8 4.7 35 161-195 322-357 (652)
468 PTZ00117 malate dehydrogenase; 80.6 2.4 5.2E-05 46.2 5.1 35 161-195 4-39 (319)
469 PRK07688 thiamine/molybdopteri 80.5 2.3 5.1E-05 46.6 5.1 34 161-194 23-57 (339)
470 PRK03815 murD UDP-N-acetylmura 80.0 1.9 4.2E-05 48.4 4.3 31 163-194 1-31 (401)
471 PRK00258 aroE shikimate 5-dehy 79.9 2.6 5.5E-05 44.9 5.0 35 161-195 122-157 (278)
472 COG1252 Ndh NADH dehydrogenase 79.8 1.4 3.1E-05 49.2 3.1 37 368-406 223-259 (405)
473 PLN02494 adenosylhomocysteinas 79.8 2.6 5.6E-05 48.0 5.2 35 161-195 253-287 (477)
474 PRK15116 sulfur acceptor prote 79.7 2.7 5.9E-05 44.4 5.1 35 161-195 29-64 (268)
475 PRK12810 gltD glutamate syntha 79.4 2.6 5.6E-05 48.5 5.2 36 565-602 431-466 (471)
476 PRK09496 trkA potassium transp 79.4 2 4.3E-05 49.0 4.3 34 163-196 1-34 (453)
477 PRK03806 murD UDP-N-acetylmura 79.3 2.5 5.4E-05 48.1 5.0 34 162-195 6-39 (438)
478 PRK15461 NADH-dependent gamma- 79.2 2.4 5.3E-05 45.5 4.6 33 163-195 2-34 (296)
479 PRK14194 bifunctional 5,10-met 79.0 5.7 0.00012 42.7 7.2 35 161-195 158-193 (301)
480 TIGR01317 GOGAT_sm_gam glutama 78.9 2.7 5.7E-05 48.6 5.1 39 561-602 442-480 (485)
481 cd05293 LDH_1 A subgroup of L- 78.9 3.1 6.7E-05 45.1 5.3 34 162-195 3-38 (312)
482 PF13478 XdhC_C: XdhC Rossmann 78.9 2.5 5.3E-05 40.0 4.0 32 165-196 1-32 (136)
483 COG2072 TrkA Predicted flavopr 78.9 2.3 5.1E-05 48.4 4.6 35 161-195 174-208 (443)
484 PRK11559 garR tartronate semia 78.8 2.4 5.2E-05 45.4 4.4 33 163-195 3-35 (296)
485 PLN02520 bifunctional 3-dehydr 78.6 2.7 5.9E-05 49.0 5.1 34 161-194 378-411 (529)
486 KOG3851 Sulfide:quinone oxidor 78.6 1.9 4.1E-05 46.0 3.4 36 160-195 37-74 (446)
487 TIGR01809 Shik-DH-AROM shikima 78.6 2.9 6.3E-05 44.7 4.9 34 162-195 125-159 (282)
488 PRK06452 sdhA succinate dehydr 78.5 77 0.0017 37.4 17.2 40 561-601 357-404 (566)
489 TIGR01087 murD UDP-N-acetylmur 78.3 2.3 5.1E-05 48.2 4.4 32 164-195 1-32 (433)
490 PRK00066 ldh L-lactate dehydro 78.2 3.4 7.3E-05 44.9 5.4 35 161-195 5-41 (315)
491 cd01487 E1_ThiF_like E1_ThiF_l 78.2 2.9 6.4E-05 41.2 4.5 31 164-194 1-32 (174)
492 TIGR02355 moeB molybdopterin s 78.1 3.2 7E-05 43.2 5.0 34 161-194 23-57 (240)
493 PRK14573 bifunctional D-alanyl 77.7 2.5 5.4E-05 52.1 4.7 34 162-195 4-38 (809)
494 cd01483 E1_enzyme_family Super 77.6 3.7 8.1E-05 38.8 4.9 32 164-195 1-33 (143)
495 PRK14027 quinate/shikimate deh 77.5 3.5 7.6E-05 44.1 5.1 34 162-195 127-161 (283)
496 PRK08644 thiamine biosynthesis 77.3 3.4 7.4E-05 42.2 4.8 34 161-194 27-61 (212)
497 cd01339 LDH-like_MDH L-lactate 77.1 2.7 6E-05 45.2 4.3 31 165-195 1-32 (300)
498 PRK05690 molybdopterin biosynt 77.1 3.7 7.9E-05 42.9 5.1 34 161-194 31-65 (245)
499 PF07991 IlvN: Acetohydroxy ac 77.1 4.3 9.3E-05 39.4 5.1 35 161-195 3-37 (165)
500 PLN02256 arogenate dehydrogena 77.1 3.5 7.6E-05 44.5 5.1 36 160-195 34-69 (304)
No 1
>PLN02529 lysine-specific histone demethylase 1
Probab=100.00 E-value=1.8e-135 Score=1183.02 Aligned_cols=738 Identities=82% Similarity=1.309 Sum_probs=681.4
Q ss_pred CCCCCCCCCCCchhhhHHhhhcCCccchhhHHHHHHhhhCCcccccccchhhhhhcchhHHHHHHHcCCCCCCCCHHHHh
Q 004458 1 MKTPVSDGDGSVSKRTLRKKVGLRNYDENLMDELIEGHLGGSFKKRNRTREALEKETETEAMIAFSLGFPIDALLEEEIR 80 (752)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~~~~p~~~~~~~E~~ 80 (752)
|+||++++ ++|||+||||++++|||||+|||+|++||||+|+||+|+..++++|+++||++|++++||.|+|+++||+
T Consensus 1 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (738)
T PLN02529 1 MDTPGQDG--TAPKRSLRKKAGLKNYDENLMDELIEKHLGGSFKKKNRTKQDLEKETETEAMIALSVGFPIDALLEEEIR 78 (738)
T ss_pred CCCcccCC--CccchhhhhhhcccccchHHHHHHHHHhcCCCccccCCCchhcccccHHHHHHHHHcCCCccccCHHHHh
Confidence 89999988 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccCccccchhHHHHHHHHHHhhhccccCCCHHHHhhhccchhHHHHHHHHHHHHHccccccccCCCCCCCCCCCC
Q 004458 81 AGVVGVLGGKEQNDYIVVRNHILARWRGNVRVWLTKGQIKETVSSEYEHLMNSAYDFLLYNGYINFGVAPSFTANMPEEA 160 (752)
Q Consensus 81 ~~~~~~~~~~~~~~yl~irn~i~~~w~~np~~~~t~~~~~~~~~~~~~~l~~~~~~~l~~~g~in~G~~~~~~~~~~~~~ 160 (752)
+.++|.+++.+|+.||+|||+||++|+.||..|||++++++++..+..+++..+++|+.++|+||||+.|......++..
T Consensus 79 ~~~~~~~~~~~~~~yl~irn~il~~w~~np~~~~~~~~a~~~~~~~i~~ci~~c~~~l~~~~~inc~vnp~~~~~~~~~~ 158 (738)
T PLN02529 79 AGVVRELGGKEQNDYIVVRNHILARWRSNVGIWLSKGQIKETVSSEYEHLISAAYDFLLYNGYINFGVSPSFASPIPEEG 158 (738)
T ss_pred ccccCccccccceeeehHHHHHHHHHHHCCceeecHHHHhhhchhhHHHHHHHHHHHHHhCCCcceeecccccCCCCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999987655455446
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHHHHHcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLSIP 240 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L~~~LGl~ 240 (752)
..++|+|||||++||+||+.|+++|++|+|||+++++|||++|.+.++.+..+.+|+|++|+++.+.||+..+++++|++
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~la~~lgl~ 238 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVLARQLSIP 238 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccchHHHHHHHhCCC
Confidence 67899999999999999999999999999999999999999999876333335899999999999999999999999999
Q ss_pred cccccCCCceecCCCccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 004458 241 LHKVRDNCPLYKPDGAPVNKEIDSKVEFIFNKLLDKVMELRKIKGGFANDVSLGSVLETLRQLYAVARSTEERELLDWHL 320 (752)
Q Consensus 241 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~sl~e~l~~l~~~~~~~~s~~~~~~l~~~~ 320 (752)
+++....+.+|..+|..++...+..+...|+.+++....++..+....+++|++++++.+.+......++.++++++|+.
T Consensus 239 ~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~ 318 (738)
T PLN02529 239 LHKVRDNCPLYKPDGALVDKEIDSNIEFIFNKLLDKVTELRQIMGGFANDISLGSVLERLRQLYGVARSTEERQLLDWHL 318 (738)
T ss_pred ccccCCCceEEeCCCcCcchhhhhhHHHHHHHHHHHHHHHHHhcccCccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 99888888999999999987777777777888888877776666556678999999988766555557888899999999
Q ss_pred HhhhhccCCCchhhhhhccccCCCccCCCCceecCCCHHHHHHHHHcCCcEEcCceEEEEEecCCcEEEEECCEEEEecE
Q 004458 321 ANLEYANAGCLSDLSATYWDQDDPYEMGGDHCFLAGGNWRLIKALCEGVPIFYEKTVNTIKYGNEGVEVIAGDQMFQADM 400 (752)
Q Consensus 321 ~~le~~~~~~l~~ls~~~~~~~~~~~~~g~~~~~~gG~~~L~~aLa~gl~I~ln~~V~~I~~~~~gv~V~~~g~~~~AD~ 400 (752)
.++++.++..++.+++.+|.+++.++++|.++.+.||+++|+++|+++++|++|++|++|.+.+++|+|+++++++.||+
T Consensus 319 ~~le~a~~~~~s~LSl~~~~~~~~~e~~G~~~~i~GG~~~Li~aLA~~L~IrLnt~V~~I~~~~dGVtV~t~~~~~~AD~ 398 (738)
T PLN02529 319 ANLEYANAGCLSDLSAAYWDQDDPYEMGGDHCFLAGGNWRLINALCEGVPIFYGKTVDTIKYGNDGVEVIAGSQVFQADM 398 (738)
T ss_pred HHhceecCCChHHhhhhHhhhccccccCCceEEECCcHHHHHHHHHhcCCEEcCCceeEEEEcCCeEEEEECCEEEEcCE
Confidence 99999999999999999999887788889999999999999999999999999999999999999999988888999999
Q ss_pred EEEcCChhhHhhccccCCCCCcHHHHHHHHhcCCccEEEEEEEecCcccccCCCcceeeccCCCCCceEEEEeeccccCC
Q 004458 401 VLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFWGEELDTFGCLNEQSSKRGEFFLFYGYHTVSG 480 (752)
Q Consensus 401 VV~AvPl~vLk~~~i~f~P~Lp~~k~~ai~~l~~g~~~kV~L~fd~~fW~~~~~~fg~l~~~~~~~~~~~~~~~~~~~~g 480 (752)
||||+|+++|++..+.|.|+||+++.++|++++|++++||++.|+++||+.+.+.||++.+....++.++.|++.+.+++
T Consensus 399 VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW~~~~~~fG~l~~~~~~~g~~~~~~~~~~~~g 478 (738)
T PLN02529 399 VLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFWGEELDTFGCLNESSNKRGEFFLFYGYHTVSG 478 (738)
T ss_pred EEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccccCCCCceEEEeccCCCCceEEEEecCCCCCC
Confidence 99999999999777999999999999999999999999999999999998877789988876666677778877766667
Q ss_pred CcEEEEEeccchhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCCCCeeEEEEecCCCCCCCCCCCCCcccCCCCchHHhh
Q 004458 481 GPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDPFTHGSYSHVRVRSSGSDYDILA 560 (752)
Q Consensus 481 ~~vL~~~~~g~~a~~~~~lsdeel~~~vl~~L~~if~~~~~~vp~p~~~~v~rW~~dp~~~Gsys~~~pg~~~~~~~~l~ 560 (752)
+++|++|+.|+.+..+..++++++++.+++.|+++|++.+..+|.|+.+.+++|..|||++|+|+++.++..+.+|+.++
T Consensus 479 gpvLvafv~G~~A~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La 558 (738)
T PLN02529 479 GPALVALVAGEAAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILA 558 (738)
T ss_pred CCEEEEEECchhhHHHhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHh
Confidence 78999999999999999999999999999999999986545678999999999999999999999999988777889999
Q ss_pred cccCCcEEEecccccCcCCcchHHHHHHHHHHHHHHHHHhhccCCccccccccccCCchhhhhhhccCCCCCCCceEeee
Q 004458 561 ESVGSRLFFAGEATTRQYPATMHGAYLSGLREASRILRATRVQKYNSRRSLLRNVGSSNDILLDLFRRPDMEFGKFLFVF 640 (752)
Q Consensus 561 ~pv~~~L~fAGe~ts~~~~g~veGAl~SG~rAA~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~ 640 (752)
+|+.++||||||+|+..|+||||||+.||+|||.+|++.++....+.++..+++...+++.|.|+|+.||++||+||++|
T Consensus 559 ~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (738)
T PLN02529 559 ESVSGRLFFAGEATTRQYPATMHGAFLSGLREASRILHVARSQQSNSRKSMQRNSGVSNDVLIDLFKRPDLAFGKFSFIF 638 (738)
T ss_pred CCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHHhhhhccchhhhhccCCcchHHHHHhhcCccccccceEEEe
Confidence 98768999999999999999999999999999999999998888887888888888899999999999999999999999
Q ss_pred CCCCCCCCccceEEEEeecCchhhhhhhccccCCCCCcceeEEccHHHHHHHHHHhCCchhHHHHHhhhcCceeeccCCc
Q 004458 641 NPLTEDPKSLGLLRVMFENCEDDLRKASANSCQNPLNLPLYTLISREQANELQQVIGGNESKLSYLTKNLGLKLMGSSAL 720 (752)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (752)
+|.++||+|++||||+|+++++++ .++|+|||+||||||.+||...||||+||+|||+||||||||+++|
T Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (738)
T PLN02529 639 NPLTEDPKSMGIMRVTFDNSGDDL----------NLPLQLYTVLSREQAHKLQLDEGSNESKLSCLMKNLGLKLMGPSSL 708 (738)
T ss_pred cCCCCCCcCceeEEEEecCCCCCC----------CccEEEEEeeeHHHHHHHHHHhCCcHHHHHHHHHhcCeeEeccccc
Confidence 999999999999999999999862 2689999999999999998779999999999999999999999999
Q ss_pred CcchhHHHHHHHHHHhccCCccccCcCccc
Q 004458 721 GTVGSSLIANIANARRGRGRNRIAAGQRQI 750 (752)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (752)
+++|+||||+||++|+||+|+++..+++-|
T Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (738)
T PLN02529 709 VNTGGSLISTIANARRGRGRNRVVAGQCFI 738 (738)
T ss_pred cchHHHHHHHHHHHhhccccceeccccCCC
Confidence 999999999999999999999999988754
No 2
>PLN03000 amine oxidase
Probab=100.00 E-value=1.5e-126 Score=1108.26 Aligned_cols=707 Identities=55% Similarity=0.963 Sum_probs=641.7
Q ss_pred HhhhCCccc-cccc--chhh---hhhcchhHHHHHHHcCCCCCCCCHHHHhccccCccCccccchhHHHHHHHHHHhhhc
Q 004458 36 EGHLGGSFK-KRNR--TREA---LEKETETEAMIAFSLGFPIDALLEEEIRAGVVGVLGGKEQNDYIVVRNHILARWRGN 109 (752)
Q Consensus 36 ~~~~~~~~~-~~~~--~~~~---~~~~~~~~a~~a~~~~~p~~~~~~~E~~~~~~~~~~~~~~~~yl~irn~i~~~w~~n 109 (752)
..++.|.+. +|++ +.++ +++|+++||++|+++|||+|+||++|+.+.+||.+++.+|..||+|||+||++|+.|
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~p~d~l~~~e~~~~~~~~~~~~~~~~yl~iRN~il~lW~~n 131 (881)
T PLN03000 52 VESVNGSNQTTKSYPGIGDEIITINKEATTEALLALTAGFPADSLTEEEIEFGVVPIVGGIEQVNYILIRNHIISKWREN 131 (881)
T ss_pred ccccCCCCccccCCCCccchhhhhhccccHHHHHHHHcCCCcccCCHHHHhccccCcccccchhhHHHHHHHHHHHHHHC
Confidence 456777775 4444 4455 999999999999999999999999999888899878899999999999999999999
Q ss_pred cccCCCHHHHhhhccchhHHHHHHHHHHHHHccccccccCCCCCCCCCCCCCCCcEEEECCChhHHHHHHHHHhCCCeEE
Q 004458 110 VRVWLTKGQIKETVSSEYEHLMNSAYDFLLYNGYINFGVAPSFTANMPEEANEGSVIIVGAGLAGLAAAKQLMSFGFKVV 189 (752)
Q Consensus 110 p~~~~t~~~~~~~~~~~~~~l~~~~~~~l~~~g~in~G~~~~~~~~~~~~~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~ 189 (752)
|..|||+++++++++.++.+|++.+++||+++||||||++......++......+|+|||||++||+||++|++.|++|+
T Consensus 132 p~~~~t~~~a~~~~~~~~~~l~~~~~~~L~r~G~in~g~~~~~~~~~~~~~~~~~VvIIGaG~aGL~aA~~L~~~G~~V~ 211 (881)
T PLN03000 132 ISSWVTKEMFLGSIPKHCSSLLDSAYNYLVTHGYINFGIAQAIKDKFPAQSSKSSVVIVGAGLSGLAAARQLMRFGFKVT 211 (881)
T ss_pred CceeecHHHHhhhcchhHHHHHHHHHHHHHHcCcccHHHHHHHHhhccccCCCCCEEEECccHHHHHHHHHHHHCCCcEE
Confidence 99999999999999999999999999999999999999986655444444457899999999999999999999999999
Q ss_pred EEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHHHHHcCCCcccccCCCceecCCCccccccchHHHHHH
Q 004458 190 VLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLSIPLHKVRDNCPLYKPDGAPVNKEIDSKVEFI 269 (752)
Q Consensus 190 v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L~~~LGl~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 269 (752)
|+|+++++|||++|.+..+...++.+|+|++|+++.+.|++..|++++|++.+.....+++|+.+|+.++...+..+...
T Consensus 212 VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~~L~~qlgl~l~~~~~~~~ly~~~Gk~v~~~~~~~ve~~ 291 (881)
T PLN03000 212 VLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGIIARQLGSSLYKVRDKCPLYRVDGKPVDPDVDLKVEVA 291 (881)
T ss_pred EEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHHHHHHHcCCceeecCCCCeEEEeCCcCCchhhhhhHHHH
Confidence 99999999999999998653334789999999999999999999999999998888889999999999887777777788
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhhccCCCchhhhhhccccCCCccCCC
Q 004458 270 FNKLLDKVMELRKIKGGFANDVSLGSVLETLRQLYAVARSTEERELLDWHLANLEYANAGCLSDLSATYWDQDDPYEMGG 349 (752)
Q Consensus 270 ~~~ll~~~~~~~~~~~~~~~~~sl~e~l~~l~~~~~~~~s~~~~~~l~~~~~~le~~~~~~l~~ls~~~~~~~~~~~~~g 349 (752)
++.+++...+++........++|++++++.+.+........+++.+++|++.++++.++..++.++..+|+++..++++|
T Consensus 292 fn~lLd~~~~lr~l~~~~~~D~SLg~aLe~~~~~~g~~~t~e~~~Ll~w~lanLE~~~as~ls~LSl~~wdqd~~~e~~G 371 (881)
T PLN03000 292 FNQLLDKASKLRQLMGDVSMDVSLGAALETFRQVSGNDVATEEMGLFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGG 371 (881)
T ss_pred HHHHHHHHHHHHHHhcccCcCCcHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHhcccccCHHHHHHHHhhhcccccCCC
Confidence 88888888888777776677899999888777666666778888899999999999999999999999998877777888
Q ss_pred CceecCCCHHHHHHHHHcCCcEEcCceEEEEEecCCcEEEEECCEEEEecEEEEcCChhhHhhccccCCCCCcHHHHHHH
Q 004458 350 DHCFLAGGNWRLIKALCEGVPIFYEKTVNTIKYGNEGVEVIAGDQMFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAI 429 (752)
Q Consensus 350 ~~~~~~gG~~~L~~aLa~gl~I~ln~~V~~I~~~~~gv~V~~~g~~~~AD~VV~AvPl~vLk~~~i~f~P~Lp~~k~~ai 429 (752)
.++.++||+++|+++|++.++|++|++|++|.+.+++|+|++++++++||+||||+|+++|+...+.|.|+||+++.++|
T Consensus 372 ~~~~v~GG~~~LieaLa~~L~I~Ln~~Vt~I~~~~dgV~V~~~~~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI 451 (881)
T PLN03000 372 DHCFLPGGNGRLVQALAENVPILYEKTVQTIRYGSNGVKVIAGNQVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCI 451 (881)
T ss_pred ceEEeCCCHHHHHHHHHhhCCcccCCcEEEEEECCCeEEEEECCcEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHH
Confidence 89999999999999999999999999999999999999998877789999999999999999778999999999999999
Q ss_pred HhcCCccEEEEEEEecCcccccCCCcceeeccCCCCCceEEEEeeccccCCCcEEEEEeccchhhhhccCCHHHHHHHHH
Q 004458 430 DRLGFGLLNKVAMVFPYVFWGEELDTFGCLNEQSSKRGEFFLFYGYHTVSGGPVLNALVAGEAAKTFESMDPSFLLHRVL 509 (752)
Q Consensus 430 ~~l~~g~~~kV~L~fd~~fW~~~~~~fg~l~~~~~~~~~~~~~~~~~~~~g~~vL~~~~~g~~a~~~~~lsdeel~~~vl 509 (752)
++++|+.++||++.|+++||+.+.+.||.+.++...++.+++|+++..+.+.++|++|+.|+.|..++.++++++++.++
T Consensus 452 ~rL~~G~l~KViL~Fd~~FW~~d~~~FG~l~~~~~~rg~~~~f~s~sp~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl 531 (881)
T PLN03000 452 KRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFYSYAPVAGGPLLIALVAGEAAHKFETMPPTDAVTRVL 531 (881)
T ss_pred HcCCCcceEEEEEEeCCccccCCCCceeEEecCCCCCceeEEEeCCCCCCCCcEEEEEecCchhHHhhcCCHHHHHHHHH
Confidence 99999999999999999999998889999987766667788888877667888999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCeeEEEEecCCCCCCCCCCCCCcccCCCCchHHhhcccC-CcEEEecccccCcCCcchHHHHHH
Q 004458 510 NVLRGIYNPKGIDVPDPLQTICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVG-SRLFFAGEATTRQYPATMHGAYLS 588 (752)
Q Consensus 510 ~~L~~if~~~~~~vp~p~~~~v~rW~~dp~~~Gsys~~~pg~~~~~~~~l~~pv~-~~L~fAGe~ts~~~~g~veGAl~S 588 (752)
++|+++|++.+..++.|+.+.+++|..|||++|+|+++.||+.+.+|+.+++|+. ++||||||||+..|+||||||+.|
T Consensus 532 ~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~GTVhGAieS 611 (881)
T PLN03000 532 HILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVT 611 (881)
T ss_pred HHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhCCCCeeHHHHHHH
Confidence 9999999865556789999999999999999999999999998889999999974 799999999998899999999999
Q ss_pred HHHHHHHHHHHhhccC--CccccccccccCCchhhhhhhccCCCCCCCceEeeeCCCCCCCCccceEEEEeecCchhhh-
Q 004458 589 GLREASRILRATRVQK--YNSRRSLLRNVGSSNDILLDLFRRPDMEFGKFLFVFNPLTEDPKSLGLLRVMFENCEDDLR- 665 (752)
Q Consensus 589 G~rAA~~Il~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 665 (752)
|+|||.+|++.++... ...++.++++.++++..|.|+|++||++||+||++|+|.++||+|++||||+|+++++++.
T Consensus 612 GlRAA~eIl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (881)
T PLN03000 612 GLREAANMAQSAKARGIRKRIDRNPSKNAHSCAILLADLFRDPDLEFGSFAIIFSRRNPDPKSPAILRVTLSEPRKRNED 691 (881)
T ss_pred HHHHHHHHHHHhhhccCCcccccCccccccchhHHHHHHhhCcCccccceEEEecCCCCCCCCceeEEEEeccccccccc
Confidence 9999999999985543 3555777888999999999999999999999999999999999999999999999876541
Q ss_pred ----h--------hhccccCCCCCcceeEEccHHHHHHHHHHhCCchhHHHHHhhhcCceeeccCCcCcchhHHHHHHHH
Q 004458 666 ----K--------ASANSCQNPLNLPLYTLISREQANELQQVIGGNESKLSYLTKNLGLKLMGSSALGTVGSSLIANIAN 733 (752)
Q Consensus 666 ----~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (752)
+ +.++|+++|++|+|||+||||||.||+++++|||+||+|||++|||||||+|+|+++|++|||+||+
T Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (881)
T PLN03000 692 PKADQHSNKILFQQLQSHFNQQQQIQVYTLLTRQQALDLREVRGGDEKRLNYLCETLGVKLVGRKGLGPGADSVIASIKA 771 (881)
T ss_pred cchhhhhhhhhhccccccccCcceEEEEEEeeHHHHHHHHHhhCCcHHHHHHHHHhcCeeEeecccCCccHHHHHHHHHH
Confidence 1 3489999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCcc
Q 004458 734 ARRGRGRNR 742 (752)
Q Consensus 734 ~~~~~~~~~ 742 (752)
+|+|+|.-.
T Consensus 772 ~~~~~~~~~ 780 (881)
T PLN03000 772 ERTGNKLPS 780 (881)
T ss_pred HHhcCCCCC
Confidence 999987643
No 3
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=100.00 E-value=2.1e-120 Score=1059.69 Aligned_cols=689 Identities=58% Similarity=0.971 Sum_probs=620.9
Q ss_pred hhhCCccc-ccccchhhhhhcchhHHHHHHHcCCCCCCCCHHHHhccccCccCccccchhHHHHHHHHHHhhhccccCCC
Q 004458 37 GHLGGSFK-KRNRTREALEKETETEAMIAFSLGFPIDALLEEEIRAGVVGVLGGKEQNDYIVVRNHILARWRGNVRVWLT 115 (752)
Q Consensus 37 ~~~~~~~~-~~~~~~~~~~~~~~~~a~~a~~~~~p~~~~~~~E~~~~~~~~~~~~~~~~yl~irn~i~~~w~~np~~~~t 115 (752)
+++++.|. ||+|-+.++++|+++|||+|+++|||+|+||++|+.+.+.+.+.+.+|+.||+|||+||++|+.||+.|||
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~p~~~l~~~e~~~~~~~~~~~~~~~~yl~iRN~il~lW~~np~~~~t 188 (808)
T PLN02328 109 TEINANPAFRRHRVRGGLGKEVDVEALIAISVGFPVDSLTEEEIEANVVSTIGGTEQANYIVVRNHILARWRSNVSNWLT 188 (808)
T ss_pred eeccCCchhccCCCchhhcccchHHHHHHHHcCCCCccCCHHHHhhcCcchhcccceeehhhHHHHHHHHHHhCCcceec
Confidence 78888886 77885667999999999999999999999999999877888888899999999999999999999999999
Q ss_pred HHHHhhhccchhHHHHHHHHHHHHHccccccccCCCCCC---CCCCCCCCCcEEEECCChhHHHHHHHHHhCCCeEEEEc
Q 004458 116 KGQIKETVSSEYEHLMNSAYDFLLYNGYINFGVAPSFTA---NMPEEANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLE 192 (752)
Q Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~l~~~g~in~G~~~~~~~---~~~~~~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E 192 (752)
++++++++..++.+|+..++.||+++||||||+.|.... ..+......+|+|||||++||+||++|++.|++|+|+|
T Consensus 189 ~~~a~~~~~~~~~~l~~~~~~~l~~~g~in~gv~~~~~~~~~~~~~~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E 268 (808)
T PLN02328 189 RDHALESIRAEHKNLVDSAYNFLLEHGYINFGVAPVIKEAQLRSFEGVEPANVVVVGAGLAGLVAARQLLSMGFKVVVLE 268 (808)
T ss_pred HHHHHhhcchhhHHHHHHHHHHHhccCceeeeccccccccccCCCCCCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEe
Confidence 999999999999999999999999999999999986542 12222457899999999999999999999999999999
Q ss_pred CCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHHHHHcCCCcccccCCCceecCCCccccccchHHHHHHHHH
Q 004458 193 GRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLSIPLHKVRDNCPLYKPDGAPVNKEIDSKVEFIFNK 272 (752)
Q Consensus 193 ~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L~~~LGl~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 272 (752)
+++++|||++|++..+.+..+.+|+|++++++...|++..+++++|++.+.+...+.+|+.+|+.++...+..+...|+.
T Consensus 269 ~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~npl~~l~~~lgl~~~~~~~~~~~~~~dG~~~~~~~~~~v~~~f~~ 348 (808)
T PLN02328 269 GRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGNPLGVLARQLGLPLHKVRDICPLYLPDGKAVDAEIDSKIEASFNK 348 (808)
T ss_pred ccccCCCcccccccCCCCcceeccCCceeecCCCccHHHHHHHHcCCceEecCCCceEEeCCCcCcchhhhhhHHHHHHH
Confidence 99999999999998764434579999999999998999999999999998888888999999999887777777788888
Q ss_pred HHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhhccCCCchhhhhhccccCCCccCCCC
Q 004458 273 LLDKVMELRKIKGGF--ANDVSLGSVLETLRQLYAVARSTEERELLDWHLANLEYANAGCLSDLSATYWDQDDPYEMGGD 350 (752)
Q Consensus 273 ll~~~~~~~~~~~~~--~~~~sl~e~l~~l~~~~~~~~s~~~~~~l~~~~~~le~~~~~~l~~ls~~~~~~~~~~~~~g~ 350 (752)
+++...+++...... ..++|++++++.+....+...++.++.+++|++.++++.++..++.+++..|++++.++++|.
T Consensus 349 lL~~~~klr~~~~~~~~~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanlE~~~gs~ls~LSl~~w~qd~~~e~~G~ 428 (808)
T PLN02328 349 LLDRVCKLRQAMIEEVKSVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANLEYANASLMSNLSMAYWDQDDPYEMGGD 428 (808)
T ss_pred HHHHHHHHHHhhhhcccccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHhccchhhHHHHHhhhhhccccccCCCe
Confidence 888877776544322 357899999987765555567888999999999999999999999999999988877888889
Q ss_pred ceecCCCHHHHHHHHHcCCcEEcCceEEEEEecCCcEEEEECCEEEEecEEEEcCChhhHhhccccCCCCCcHHHHHHHH
Q 004458 351 HCFLAGGNWRLIKALCEGVPIFYEKTVNTIKYGNEGVEVIAGDQMFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAID 430 (752)
Q Consensus 351 ~~~~~gG~~~L~~aLa~gl~I~ln~~V~~I~~~~~gv~V~~~g~~~~AD~VV~AvPl~vLk~~~i~f~P~Lp~~k~~ai~ 430 (752)
++.++||+++|+++|++.++|++|++|++|.+.+++|.|+++|+++.||+||||+|+++|++..+.|.|+||+++.++|+
T Consensus 429 ~~~v~GG~~~Li~aLa~~L~I~ln~~V~~I~~~~dgV~V~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~ 508 (808)
T PLN02328 429 HCFIPGGNDTFVRELAKDLPIFYERTVESIRYGVDGVIVYAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQ 508 (808)
T ss_pred EEEECCcHHHHHHHHHhhCCcccCCeeEEEEEcCCeEEEEeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999877889999999999999999997789999999999999999
Q ss_pred hcCCccEEEEEEEecCcccccCCCcceeeccCCCCCceEEEEeeccccCCCcEEEEEeccchhhhhccCCHHHHHHHHHH
Q 004458 431 RLGFGLLNKVAMVFPYVFWGEELDTFGCLNEQSSKRGEFFLFYGYHTVSGGPVLNALVAGEAAKTFESMDPSFLLHRVLN 510 (752)
Q Consensus 431 ~l~~g~~~kV~L~fd~~fW~~~~~~fg~l~~~~~~~~~~~~~~~~~~~~g~~vL~~~~~g~~a~~~~~lsdeel~~~vl~ 510 (752)
+++|++++||++.|+++||+.+.+.||.+.++...++.++.|+++...+++++|++|++|+.+..+.+++++++++.+++
T Consensus 509 ~l~yG~~~KV~L~F~~~FW~~~~d~fG~l~~d~s~rG~~~lf~s~s~~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL~ 588 (808)
T PLN02328 509 RLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSMRGEFFLFYSYSSVSGGPLLIALVAGDAAVKFETLSPVESVKRVLQ 588 (808)
T ss_pred cCCCcceEEEEEEeCCccccCCCCceEEEeecCCCCceEEEEecCCCCCCCcEEEEEecChhhHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999888889998877666777888888776677899999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCeeEEEEecCCCCCCCCCCCCCcccCCCCchHHhhcccC-CcEEEecccccCcCCcchHHHHHHH
Q 004458 511 VLRGIYNPKGIDVPDPLQTICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVG-SRLFFAGEATTRQYPATMHGAYLSG 589 (752)
Q Consensus 511 ~L~~if~~~~~~vp~p~~~~v~rW~~dp~~~Gsys~~~pg~~~~~~~~l~~pv~-~~L~fAGe~ts~~~~g~veGAl~SG 589 (752)
.|+++|++.+..++.|+.+.+++|..+||++|+|+++.+|+.+.+++.+++|+. ++||||||+|+..|+||||||+.||
T Consensus 589 ~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SG 668 (808)
T PLN02328 589 ILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSG 668 (808)
T ss_pred HHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHH
Confidence 999999864445688999999999999999999999999988888999999974 7999999999988999999999999
Q ss_pred HHHHHHHHHHhhccCCccccccccccCCchhhhhhhccCCCCCCCceEeeeCCCCCCCCccceEEEEeecCchhhhhhhc
Q 004458 590 LREASRILRATRVQKYNSRRSLLRNVGSSNDILLDLFRRPDMEFGKFLFVFNPLTEDPKSLGLLRVMFENCEDDLRKASA 669 (752)
Q Consensus 590 ~rAA~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (752)
+|||.+|+..++....+..++.. +...++..|+|+|++||++||+||++|+|.++||+|++||||+|+.++++
T Consensus 669 lRAA~eIl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 741 (808)
T PLN02328 669 MREAANILRVARRRSLCIDDKVN-NDEEEDDCLDQLFDTPDLTFGSFSILFDPRSNDPESLSLLRVKFQGEKPD------ 741 (808)
T ss_pred HHHHHHHHHHHhhcccCCccccc-ccchhhhHHHHHhcCcCccccceEEEecCCCCCCCCceeEEEEeccCCCC------
Confidence 99999999999887665433333 34468899999999999999999999999999999999999999998775
Q ss_pred cccCCCCCcceeEEccHHHHHHHHHHhCCchhHHHHHhhhcCceeeccCCcCcchhHHHHHHHHHHhcc
Q 004458 670 NSCQNPLNLPLYTLISREQANELQQVIGGNESKLSYLTKNLGLKLMGSSALGTVGSSLIANIANARRGR 738 (752)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (752)
+++|+||++||||||.+|+++ +|||+||+|||++|||||||+|+|+++|++|||+||++|+++
T Consensus 742 -----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (808)
T PLN02328 742 -----SCFLCLYGLVSRKQAIELGEL-DDDGKRNEYLYEKFQVVLVGRKGLSQEGESLISSIKEARLNL 804 (808)
T ss_pred -----cccEEEEEeeeHHHHHHHHHc-CCcHHHHHHHHHhcCeEEeecccccccHHHHHHHHHHhhhcc
Confidence 377999999999999999995 899999999999999999999999999999999999999765
No 4
>PLN02976 amine oxidase
Probab=100.00 E-value=3.8e-63 Score=586.86 Aligned_cols=545 Identities=41% Similarity=0.665 Sum_probs=453.8
Q ss_pred hhhcchhHHHHHHHcCCCCCCCCHHHHhccccCcc-C-ccccchhHHHHHHHHHHhhhccccCCCHHHHhhh--c---cc
Q 004458 53 LEKETETEAMIAFSLGFPIDALLEEEIRAGVVGVL-G-GKEQNDYIVVRNHILARWRGNVRVWLTKGQIKET--V---SS 125 (752)
Q Consensus 53 ~~~~~~~~a~~a~~~~~p~~~~~~~E~~~~~~~~~-~-~~~~~~yl~irn~i~~~w~~np~~~~t~~~~~~~--~---~~ 125 (752)
+-++.+.--.+|+++||.+-+.++-| .-.|-++ . +.+...||..||.||-+|.+|.+.-|...+|--. . ..
T Consensus 439 ~~~~~~~~~~aav~~gl~a~~~~~~e--~~~~k~~lkr~~~~q~yl~cr~~~l~~w~k~~~~~l~~~~c~v~~~~~~~e~ 516 (1713)
T PLN02976 439 VSKEGENGGAAAVSAGLKARAVGPIE--KIKFKEVLKRKGGLQEYLECRNMILGLWSKDVSRILPLADCGVTDTPSEDES 516 (1713)
T ss_pred ccccccCccHhhhhccccccccChHH--HHHHHHHHHhccchHHHHHHHHHHHHHhhhhhhhcccHhhccccCCcccccC
Confidence 56666666668999999999999999 6778884 3 3568999999999999999999888877775331 1 12
Q ss_pred hhHHHHHHHHHHHHHccccccccCCCCCCCCCCC----------------------------------------------
Q 004458 126 EYEHLMNSAYDFLLYNGYINFGVAPSFTANMPEE---------------------------------------------- 159 (752)
Q Consensus 126 ~~~~l~~~~~~~l~~~g~in~G~~~~~~~~~~~~---------------------------------------------- 159 (752)
+-..|++.+|.||-.+||||.|+...+....|..
T Consensus 517 ~~~~l~r~~~~fld~~gyin~g~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (1713)
T PLN02976 517 PRASLIREVYLFLDQRGYINAGIASEKEKAEPSTNHNYKLVEEKTLEESSGASVADSEDGVSFILGQVKSSESSTEGKDC 596 (1713)
T ss_pred chhhHHHHHHHHhhccCceecccccccccCCCCCCcchhhhhccccccCCcccccccccchhhhhhcccccccccccccc
Confidence 3468999999999999999999885432110000
Q ss_pred --------------------------------------------------------------------------------
Q 004458 160 -------------------------------------------------------------------------------- 159 (752)
Q Consensus 160 -------------------------------------------------------------------------------- 159 (752)
T Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1713)
T PLN02976 597 VLVDDENDASGDLPNVCECSELLASDIQQCGASNEKLNNGLVSLDALSASPSSSVLDSPETLSVIKPELRNELQSVQSNS 676 (1713)
T ss_pred cccccchhhhccccccccHhhhcccchhhcchhhhhhhccccchhhhccCCccccccCcccccccchhhhcccccchhhh
Confidence
Q ss_pred --------------CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCC
Q 004458 160 --------------ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGI 225 (752)
Q Consensus 160 --------------~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~ 225 (752)
...++|+|||||++|++||++|.+.|++|+|||+++++||++++.+... ++.+|+|++++++.
T Consensus 677 ~~~~~~~~~~~~~~~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~---g~pvDlGas~i~G~ 753 (1713)
T PLN02976 677 CIEMGGNHCVLCDSVDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSL---SVPVDLGASIITGV 753 (1713)
T ss_pred HHhcCCCCCccCCcCCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccC---CceeccCcEEEecc
Confidence 0017899999999999999999999999999999999999999987532 27899999999986
Q ss_pred Cc--------cHHHHHHHHcCCCcccccCCCceec-CCCccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHH
Q 004458 226 HA--------NPLGVLARQLSIPLHKVRDNCPLYK-PDGAPVNKEIDSKVEFIFNKLLDKVMELRKIKGGFANDVSLGSV 296 (752)
Q Consensus 226 ~~--------n~l~~L~~~LGl~~~~~~~~~~~~~-~~G~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~sl~e~ 296 (752)
.. ||+..+++++|++.......+++|. .+|..++...+..+...|+.+++..............++|++++
T Consensus 754 ~~nv~~~r~~np~~~la~qlGl~l~~~~~~~~~yd~~~G~~V~~e~~~~v~~~fn~lld~~~~~~~~~g~~a~d~SLgd~ 833 (1713)
T PLN02976 754 EADVATERRPDPSSLICAQLGLELTVLNSDCPLYDVVTGEKVPADLDEALEAEYNSLLDDMVLLVAQKGEHAMKMSLEDG 833 (1713)
T ss_pred cccccccccccHHHHHHHhcCCccccccCCCceeEccCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCccCCCHHHH
Confidence 43 6777889999999887777666665 78999988888888889998887665433332333457888888
Q ss_pred HHHHHHH---------------------------------------HHhhCCHHHHHHHHHHHHhhhhccCCCchhhhhh
Q 004458 297 LETLRQL---------------------------------------YAVARSTEERELLDWHLANLEYANAGCLSDLSAT 337 (752)
Q Consensus 297 l~~l~~~---------------------------------------~~~~~s~~~~~~l~~~~~~le~~~~~~l~~ls~~ 337 (752)
++..... ....+++..+.+++|++..+++.++..+..+++.
T Consensus 834 Le~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa~L~eVSl~ 913 (1713)
T PLN02976 834 LEYALKRRRMPRPGVDIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAALLKEVSLP 913 (1713)
T ss_pred HHHHHhhhhccccccccchhhcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccCCHHHhhhh
Confidence 8731110 0113455667788899888888888889999998
Q ss_pred ccccCCCc-cCCCCceecCCCHHHHHHHHHcCCcEEcCceEEEEEec----------CCcEEEEE-CCEEEEecEEEEcC
Q 004458 338 YWDQDDPY-EMGGDHCFLAGGNWRLIKALCEGVPIFYEKTVNTIKYG----------NEGVEVIA-GDQMFQADMVLCTV 405 (752)
Q Consensus 338 ~~~~~~~~-~~~g~~~~~~gG~~~L~~aLa~gl~I~ln~~V~~I~~~----------~~gv~V~~-~g~~~~AD~VV~Av 405 (752)
+|.++..| .++|.++.++||+++|+++|+++++|++|++|++|.+. +++|.|++ +|+++.||+||+|+
T Consensus 914 ~~~qd~~y~~fgG~~~rIkGGYqqLIeALAe~L~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTV 993 (1713)
T PLN02976 914 YWNQDDVYGGFGGAHCMIKGGYSNVVESLAEGLDIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITV 993 (1713)
T ss_pred hhhcccccccCCCceEEeCCCHHHHHHHHHhhCCeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeC
Confidence 88876544 35778889999999999999999999999999999995 35788876 78899999999999
Q ss_pred ChhhHhhccccCCCCCcHHHHHHHHhcCCccEEEEEEEecCcccccCCCcceeeccCCCCCceEEEEeeccccCCCcEEE
Q 004458 406 PLGVLKEKTIKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFWGEELDTFGCLNEQSSKRGEFFLFYGYHTVSGGPVLN 485 (752)
Q Consensus 406 Pl~vLk~~~i~f~P~Lp~~k~~ai~~l~~g~~~kV~L~fd~~fW~~~~~~fg~l~~~~~~~~~~~~~~~~~~~~g~~vL~ 485 (752)
|+++|+...+.|.|+||+++.++|++++||.++||+|.|+++||+.+...||...++...++.++.+|+...+.+.++|+
T Consensus 994 PLGVLKag~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~~~~wnlr~psG~pVLV 1073 (1713)
T PLN02976 994 PLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCFMFWNVKKTVGAPVLI 1073 (1713)
T ss_pred CHHHhhhcccccCCcccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCCCCceEEEeccCCCCCCCCEEE
Confidence 99999976799999999999999999999999999999999999988788887765544566677788776667778999
Q ss_pred EEeccchhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCCCCeeEEEEecCCCCCCCCCCCCCcccCCCCchHHhhcccCC
Q 004458 486 ALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVGS 565 (752)
Q Consensus 486 ~~~~g~~a~~~~~lsdeel~~~vl~~L~~if~~~~~~vp~p~~~~v~rW~~dp~~~Gsys~~~pg~~~~~~~~l~~pv~~ 565 (752)
+|+.|..+..+..++++++++.+++.|+++||.. .+|.|+.+.+++|..|||++|+|+++.||+.+.+++.+++|+++
T Consensus 1074 afv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~--~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAePVgg 1151 (1713)
T PLN02976 1074 ALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEA--LVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVEN 1151 (1713)
T ss_pred EEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcc--cccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhCCCCC
Confidence 9999999999999999999999999999999853 46789999999999999999999999999988899999999977
Q ss_pred cEEEecccccCcCCcchHHHHHHHHHHHHHHHHHhhccC
Q 004458 566 RLFFAGEATTRQYPATMHGAYLSGLREASRILRATRVQK 604 (752)
Q Consensus 566 ~L~fAGe~ts~~~~g~veGAl~SG~rAA~~Il~~l~~~~ 604 (752)
+||||||+|+..|+||||||+.||.|||.+|+..+....
T Consensus 1152 RLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~~G~ 1190 (1713)
T PLN02976 1152 CLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNTGN 1190 (1713)
T ss_pred cEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHHccC
Confidence 799999999999999999999999999999999986643
No 5
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-59 Score=529.04 Aligned_cols=439 Identities=48% Similarity=0.805 Sum_probs=390.5
Q ss_pred CCCCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHHHHHc
Q 004458 158 EEANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQL 237 (752)
Q Consensus 158 ~~~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L~~~L 237 (752)
...+.++|||||||+|||+||++|.++|++|+|||+++|+|||++|++..+. ..+|+|++++++.+.||+..+++||
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~---~~vd~Gas~~~g~~~npl~~l~~ql 87 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGG---DHVDLGASVLTGVYNNPLALLSKQL 87 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCC---CeeecCCceecCcCccHHHHHHHHh
Confidence 3456789999999999999999999999999999999999999999999862 3699999999999999999999999
Q ss_pred CCCcccccCCCceecCCCccccccchHHHHHHHHHHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHHHhhCCH----
Q 004458 238 SIPLHKVRDNCPLYKPDGAPVNKEIDSKVEFIFNKLLDKVMELRKIKGGFAN---DVSLGSVLETLRQLYAVARST---- 310 (752)
Q Consensus 238 Gl~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~---~~sl~e~l~~l~~~~~~~~s~---- 310 (752)
|++...+...|++|...+.......+......++.++.....+.+....... ..++.+.++............
T Consensus 88 gl~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (501)
T KOG0029|consen 88 GLELYKVRDTCPLFNENGGESDKVFDDFVEQEFNRLLDDASNLEQRLDNEIIGISDDSFGEALEAFLSASRLMKTLLELL 167 (501)
T ss_pred CcccceecccccccccCCcccccccccchhhhhHHHHHHHhhhhhhhhhcccccccccHHHHHHhHHHHHHHHHhhHHHh
Confidence 9999999999999998887777777778888899999888888776665433 456666665543333222222
Q ss_pred ---HHHHHHHHHHHhhhhccCCCchhhhhhccccCCCccCCCCceecCCCHHHHHHHHHcCCcEEcCceEEEEEecCCc-
Q 004458 311 ---EERELLDWHLANLEYANAGCLSDLSATYWDQDDPYEMGGDHCFLAGGNWRLIKALCEGVPIFYEKTVNTIKYGNEG- 386 (752)
Q Consensus 311 ---~~~~~l~~~~~~le~~~~~~l~~ls~~~~~~~~~~~~~g~~~~~~gG~~~L~~aLa~gl~I~ln~~V~~I~~~~~g- 386 (752)
+...++.|++.++++.....+..++...|+++..+...+.|....+|+..++..++++++|++++.|.+|.+.+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~~~v~~~la~~l~I~~~~~v~~i~~~~~~~ 247 (501)
T KOG0029|consen 168 LEGEADKVLQWHLVNLELTFIAHLENASARLWDQDELFGGGGIHLLMKGGYEPVVNSLAEGLDIHLNKRVRKIKYGDDGA 247 (501)
T ss_pred hhhhhhHHHHHHHHHHHHHhhccHhHhhHHhhhhhhhcccccchhHhhCCccHHHhhcCCCcceeeceeeEEEEEecCCc
Confidence 4455889999999999999999999999999998887778999999999999999999999999999999999887
Q ss_pred EEEE-ECCEEEEecEEEEcCChhhHhhccccCCCCCcHHHHHHHHhcCCccEEEEEEEecCcccccCCCcceeeccCCCC
Q 004458 387 VEVI-AGDQMFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFWGEELDTFGCLNEQSSK 465 (752)
Q Consensus 387 v~V~-~~g~~~~AD~VV~AvPl~vLk~~~i~f~P~Lp~~k~~ai~~l~~g~~~kV~L~fd~~fW~~~~~~fg~l~~~~~~ 465 (752)
+.|+ .++..+.+|+||+|+|+++|+...+.|.|+||.++.++|+++++|.++||.+.|++.||+.+.+.||++.++...
T Consensus 248 ~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~~~~~ 327 (501)
T KOG0029|consen 248 VKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIVPETSVL 327 (501)
T ss_pred eEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEccccccc
Confidence 3443 355559999999999999999888999999999999999999999999999999999999889999999998877
Q ss_pred CceEEEEeeccccCCCcEEEEEeccchhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCCCCeeEEEEecCCCCCCCCCCC
Q 004458 466 RGEFFLFYGYHTVSGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDPFTHGSYS 545 (752)
Q Consensus 466 ~~~~~~~~~~~~~~g~~vL~~~~~g~~a~~~~~lsdeel~~~vl~~L~~if~~~~~~vp~p~~~~v~rW~~dp~~~Gsys 545 (752)
++.+ .||+.....+.++|++++.|+.+..+..++++++++.++..|+++|+ ...+++|+++.+++|..++++.|+|+
T Consensus 328 ~~~~-~f~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f~--~~~~~~p~~~~vt~w~~d~~~~gsys 404 (501)
T KOG0029|consen 328 RGLF-TFYDCKPVAGHPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVFG--SEEVPDPLDALVTRWGTDPLSGGSYS 404 (501)
T ss_pred cchh-hhhhcCccCCCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHhc--cCcCCCccceeeeeecccccCCcccc
Confidence 7655 67787777888899999999999999999999999999999999998 44789999999999999999999999
Q ss_pred CCcccCCCCchHHhhcccCCcEEEecccccCcCCcchHHHHHHHHHHHHHHHHHhhc
Q 004458 546 HVRVRSSGSDYDILAESVGSRLFFAGEATTRQYPATMHGAYLSGLREASRILRATRV 602 (752)
Q Consensus 546 ~~~pg~~~~~~~~l~~pv~~~L~fAGe~ts~~~~g~veGAl~SG~rAA~~Il~~l~~ 602 (752)
+..++.....|+.+++|+.+++||||++|+..|+++|+||+.||.+||..|+..+..
T Consensus 405 ~~~~~~~~~~y~~l~~pi~~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~~ 461 (501)
T KOG0029|consen 405 YVAVGSDGDDYDRLAEPIKNRVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLIE 461 (501)
T ss_pred ccCCCCChhHHHHHhccccCcEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHHh
Confidence 999999999999999999666999999999999999999999999999999999873
No 6
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=4.2e-52 Score=469.66 Aligned_cols=420 Identities=34% Similarity=0.544 Sum_probs=321.7
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCC-CccHHHHHHHHcCCCc
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGI-HANPLGVLARQLSIPL 241 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~-~~n~l~~L~~~LGl~~ 241 (752)
++|+|||||+|||+||+.|.+.|++|+|||+++|+|||++|.+..| +.+|+|++|+++. ..|++..|++++|++.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g----~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~ 76 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFG----FPVDMGASWLHGVCNENPLAPLIGRLGLPL 76 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCC----cccCCCCeeEeccCCCchHHHHHHHhCCce
Confidence 4799999999999999999999999999999999999999987554 7899999999975 4678999999999976
Q ss_pred ccccCCCceec-----------CCCccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH-HhhCC
Q 004458 242 HKVRDNCPLYK-----------PDGAPVNKEIDSKVEFIFNKLLDKVMELRKIKGGFANDVSLGSVLETLRQLY-AVARS 309 (752)
Q Consensus 242 ~~~~~~~~~~~-----------~~G~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~sl~e~l~~l~~~~-~~~~s 309 (752)
........+.+ .++..++......+...+..++....... ....+++|+.++++.+.... .....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~~~~~~~~~~~~~~~ 153 (435)
T PLN02268 77 YRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGETFERILEETEKVR---DEHEEDMSLLQAISIVLERHPELRLE 153 (435)
T ss_pred EeccCCccccccccccccceecCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---hccCCCcCHHHHHHHHhhhCcccccc
Confidence 54432222211 11222222211222233333333332221 12356889999887643211 01112
Q ss_pred HHHHHHHHHHHHhhhhccCCCchhhhhhccccCCCccCCCCceecCCCHHHHHHHHHcCCcEEcCceEEEEEecCCcEEE
Q 004458 310 TEERELLDWHLANLEYANAGCLSDLSATYWDQDDPYEMGGDHCFLAGGNWRLIKALCEGVPIFYEKTVNTIKYGNEGVEV 389 (752)
Q Consensus 310 ~~~~~~l~~~~~~le~~~~~~l~~ls~~~~~~~~~~~~~g~~~~~~gG~~~L~~aLa~gl~I~ln~~V~~I~~~~~gv~V 389 (752)
....+++++++..+....+.....++...|.+.. ...|.+..+.+|+++++++|+++++|++|++|++|.+.+++|.|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~--~~~g~~~~~~~G~~~l~~~l~~~~~i~~~~~V~~i~~~~~~v~v 231 (435)
T PLN02268 154 GLAHEVLQWYLCRMEGWFAADADTISLKSWDQEE--LLEGGHGLMVRGYDPVINTLAKGLDIRLNHRVTKIVRRYNGVKV 231 (435)
T ss_pred hHHHHHHHHHHHHHHHHhCCChHhCchhhcCCcc--ccCCCceeecCCHHHHHHHHhccCceeCCCeeEEEEEcCCcEEE
Confidence 2344555554433333344555666666564422 12345667899999999999999999999999999999999998
Q ss_pred EE-CCEEEEecEEEEcCChhhHhhccccCCCCCcHHHHHHHHhcCCccEEEEEEEecCcccccCCCcceeeccCCCCCce
Q 004458 390 IA-GDQMFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFWGEELDTFGCLNEQSSKRGE 468 (752)
Q Consensus 390 ~~-~g~~~~AD~VV~AvPl~vLk~~~i~f~P~Lp~~k~~ai~~l~~g~~~kV~L~fd~~fW~~~~~~fg~l~~~~~~~~~ 468 (752)
++ +|+++.||+||+|+|+.++++..+.|.|+||+++.++|++++|++..|+++.|+++||+.. ..+|.+.+....
T Consensus 232 ~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~~-~~~g~~~~~~~~--- 307 (435)
T PLN02268 232 TVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPNV-EFLGVVAPTSYG--- 307 (435)
T ss_pred EECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCCC-ceeeccCCCCCC---
Confidence 76 7778999999999999999876689999999999999999999999999999999999753 456666543221
Q ss_pred EEEEeeccccCCCcEEEEEeccchhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCCCCeeEEEEecCCCCCCCCCCCCCc
Q 004458 469 FFLFYGYHTVSGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDPFTHGSYSHVR 548 (752)
Q Consensus 469 ~~~~~~~~~~~g~~vL~~~~~g~~a~~~~~lsdeel~~~vl~~L~~if~~~~~~vp~p~~~~v~rW~~dp~~~Gsys~~~ 548 (752)
+..+.+....++.++|++|+.|+.+..+..++++++++.++++|+++||. .+.|+.+.+++|..+||+.|+|+++.
T Consensus 308 ~~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~----~~~p~~~~~~~W~~dp~~~G~~~~~~ 383 (435)
T PLN02268 308 CSYFLNLHKATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPD----ATEPVQYLVSRWGSDPNSLGCYSYDL 383 (435)
T ss_pred ceEEEecccCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCC----CCCccEEEecccCCCCCCCccCCCCC
Confidence 22233333345677899999999999999999999999999999999973 35789999999999999999999999
Q ss_pred ccCCCCchHHhhcccCCcEEEecccccCcCCcchHHHHHHHHHHHHHHHHHh
Q 004458 549 VRSSGSDYDILAESVGSRLFFAGEATTRQYPATMHGAYLSGLREASRILRAT 600 (752)
Q Consensus 549 pg~~~~~~~~l~~pv~~~L~fAGe~ts~~~~g~veGAl~SG~rAA~~Il~~l 600 (752)
||+....++.+++|+ ++||||||+|+..++||||||+.||+|||++|++.+
T Consensus 384 ~g~~~~~~~~l~~p~-~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 384 VGKPHDLYERLRAPV-DNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred CCCCHHHHHHHhCCC-CCeEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 998777889999999 889999999999889999999999999999999754
No 7
>PLN02568 polyamine oxidase
Probab=100.00 E-value=3.5e-50 Score=460.56 Aligned_cols=435 Identities=29% Similarity=0.428 Sum_probs=323.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCC-----CeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHHHH
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFG-----FKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLAR 235 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g-----~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L~~ 235 (752)
+.++|+|||||++||+||++|++.| ++|+|||+++++|||++|.+..+ +.+|+|++++++...|++..|++
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g----~~~d~G~~~~~g~~~~~~~~l~~ 79 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGG----ERIEMGATWIHGIGGSPVYKIAQ 79 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCC----eEEecCCceeCCCCCCHHHHHHH
Confidence 3578999999999999999999988 89999999999999999998875 78999999999988899999999
Q ss_pred HcCCCccccc--------CCCceecCCCccccccchHHHHHHHHHHHHHHHHHH---------------HHhc---CCCC
Q 004458 236 QLSIPLHKVR--------DNCPLYKPDGAPVNKEIDSKVEFIFNKLLDKVMELR---------------KIKG---GFAN 289 (752)
Q Consensus 236 ~LGl~~~~~~--------~~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~~~~~~---------------~~~~---~~~~ 289 (752)
++|+...... ....++..+|..++......+...++.+++...... .... ....
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 159 (539)
T PLN02568 80 EAGSLESDEPWECMDGFPDRPKTVAEGGFEVDPSIVESISTLFRGLMDDAQGKLIEPSEVDEVDFVKLAAKAARVCESGG 159 (539)
T ss_pred HhCCccccCcceecccccccceEEccCCcCCCHHHHHHHHHHHHHHHHHhhcccccccccccccccccchhccchhccCC
Confidence 9998543211 123456678887776666667777777776543211 0000 0113
Q ss_pred CCCHHHHHHH-HHHHHHhhCCH---------HH----HHHHHHHHHhhhhccCCCchhhhhhccccCCC-ccCCCCceec
Q 004458 290 DVSLGSVLET-LRQLYAVARST---------EE----RELLDWHLANLEYANAGCLSDLSATYWDQDDP-YEMGGDHCFL 354 (752)
Q Consensus 290 ~~sl~e~l~~-l~~~~~~~~s~---------~~----~~~l~~~~~~le~~~~~~l~~ls~~~~~~~~~-~~~~g~~~~~ 354 (752)
+.|++++++. +.........+ .. ...+. .+.+++.. ...+..++...+..... .+..|.++.+
T Consensus 160 ~~Sl~~fl~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~e~~-~~~~~~ls~ls~~~~~~~~~~~g~~~~i 237 (539)
T PLN02568 160 GGSVGSFLRRGLDAYWDSVSADEQIKGYGGWSRKLLEEAIFT-MHENTQRT-YTSADDLSTLDLAAESEYRMFPGEEITI 237 (539)
T ss_pred CCcHHHHHHHHHHHHHhhcccchhhccccchhHHHHHHHHHH-HHHHhhcc-ccccccHhhccccccCcceecCCCeEEE
Confidence 4588888875 22211111110 11 11222 22233322 22222222222222221 2345668889
Q ss_pred CCCHHHHHHHHHcCCc---EEcCceEEEEEecCCcEEEEE-CCEEEEecEEEEcCChhhHhhc----cccCCCCCcHHHH
Q 004458 355 AGGNWRLIKALCEGVP---IFYEKTVNTIKYGNEGVEVIA-GDQMFQADMVLCTVPLGVLKEK----TIKFEPELPQRKV 426 (752)
Q Consensus 355 ~gG~~~L~~aLa~gl~---I~ln~~V~~I~~~~~gv~V~~-~g~~~~AD~VV~AvPl~vLk~~----~i~f~P~Lp~~k~ 426 (752)
+||+++|+++|++.++ |++|++|++|.+.+++|+|++ +|+++.||+||+|+|+++|++. .+.|.|+||+.+.
T Consensus 238 ~gG~~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP~~k~ 317 (539)
T PLN02568 238 AKGYLSVIEALASVLPPGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDFKT 317 (539)
T ss_pred CCcHHHHHHHHHhhCCCCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCCHHHH
Confidence 9999999999999875 999999999999999999976 7788999999999999999963 2589999999999
Q ss_pred HHHHhcCCccEEEEEEEecCcccccC-----CCcceeeccCCCC--C-ceEEEEe----eccc-cCCCcEEEEEeccchh
Q 004458 427 AAIDRLGFGLLNKVAMVFPYVFWGEE-----LDTFGCLNEQSSK--R-GEFFLFY----GYHT-VSGGPVLNALVAGEAA 493 (752)
Q Consensus 427 ~ai~~l~~g~~~kV~L~fd~~fW~~~-----~~~fg~l~~~~~~--~-~~~~~~~----~~~~-~~g~~vL~~~~~g~~a 493 (752)
++|++++|+.++||++.|+++||... ...+..+...... + ..+..|. +... ..+.++|++|+.|+.|
T Consensus 318 ~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~~~~G~~A 397 (539)
T PLN02568 318 DAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPIHKNSSVLLSWFAGKEA 397 (539)
T ss_pred HHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhccccccccCCCCCEEEEEeccHHH
Confidence 99999999999999999999999752 1222223221110 0 0111111 1111 1366799999999999
Q ss_pred hhhccCCHHHHHHHHHHHHHHhcCCCCC-------------------CCCCCeeEEEEecCCCCCCCCCCCCCcccCCCC
Q 004458 494 KTFESMDPSFLLHRVLNVLRGIYNPKGI-------------------DVPDPLQTICTRWGSDPFTHGSYSHVRVRSSGS 554 (752)
Q Consensus 494 ~~~~~lsdeel~~~vl~~L~~if~~~~~-------------------~vp~p~~~~v~rW~~dp~~~Gsys~~~pg~~~~ 554 (752)
..++.++++++++.+++.|+++||+... ..+.|+.+.+++|.+|||++|+|++++||+.+.
T Consensus 398 ~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs~~~~g~~~~ 477 (539)
T PLN02568 398 LELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYSYVAVGSSGD 477 (539)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccCCCcCCCChh
Confidence 9999999999999999999999985311 124789999999999999999999999999888
Q ss_pred chHHhhcccC------------CcEEEecccccCcCCcchHHHHHHHHHHHHHHHHHhh
Q 004458 555 DYDILAESVG------------SRLFFAGEATTRQYPATMHGAYLSGLREASRILRATR 601 (752)
Q Consensus 555 ~~~~l~~pv~------------~~L~fAGe~ts~~~~g~veGAl~SG~rAA~~Il~~l~ 601 (752)
+++.|++|+. ++||||||+|+..|++|||||++||+|||++|+...+
T Consensus 478 ~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~~ 536 (539)
T PLN02568 478 DLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHYK 536 (539)
T ss_pred HHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHhc
Confidence 8999999983 2799999999999999999999999999999998763
No 8
>PLN02676 polyamine oxidase
Probab=100.00 E-value=4.9e-49 Score=448.01 Aligned_cols=430 Identities=29% Similarity=0.473 Sum_probs=312.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCC-eEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcC---CCccHHHHHHHH
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGF-KVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITG---IHANPLGVLARQ 236 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~-~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~---~~~n~l~~L~~~ 236 (752)
..++|+|||||++||+||++|++.|. +|+|+|+++++|||+.+.+..| +.+|+|++++.+ ...|++..++++
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g----~~~d~g~~~~~~~~~~~~~~~~~l~~~ 100 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAG----VSVELGANWVEGVGGPESNPIWELANK 100 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCC----eEEecCCEEEEcccCcccChHHHHHHh
Confidence 46799999999999999999999998 6999999999999999988765 789999999986 456889999999
Q ss_pred cCCCccccc-C--CCceecCCCccccccchHHHHHHHHHHHHHHHHHHHHh-cCCCCCCCHHHHHHHHHHHHHhhCCHHH
Q 004458 237 LSIPLHKVR-D--NCPLYKPDGAPVNKEIDSKVEFIFNKLLDKVMELRKIK-GGFANDVSLGSVLETLRQLYAVARSTEE 312 (752)
Q Consensus 237 LGl~~~~~~-~--~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~~~~~~~sl~e~l~~l~~~~~~~~s~~~ 312 (752)
+|+...... + ...+|..+|+.++..........+..+.+....+.... ....+++++.+... +.+.. ......
T Consensus 101 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~~~~~--~~~~~~ 177 (487)
T PLN02676 101 LKLRTFYSDFDNLSSNIYKQDGGLYPKKVVQKSMKVADASDEFGENLSISLSAKKAVDISILTAQR-LFGQV--PKTPLE 177 (487)
T ss_pred cCCceeecCccccceeEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCccHHHHHH-HHhhC--CCCHHH
Confidence 999866432 1 23456667777643211111122222222111221111 12234566533211 11110 011111
Q ss_pred HHHHHHHHHhhhhccCCCchhhhhhccccCCCc-cCCCCceec--CCCHHHHHHHHHcCC-----------cEEcCceEE
Q 004458 313 RELLDWHLANLEYANAGCLSDLSATYWDQDDPY-EMGGDHCFL--AGGNWRLIKALCEGV-----------PIFYEKTVN 378 (752)
Q Consensus 313 ~~~l~~~~~~le~~~~~~l~~ls~~~~~~~~~~-~~~g~~~~~--~gG~~~L~~aLa~gl-----------~I~ln~~V~ 378 (752)
. ...+.... +..+.....+++.++.....+ ..++..+.+ ++|+++|++.|++.+ +|++|++|+
T Consensus 178 ~-~~~~~~~~--~~~~~~~~~~S~~~~~~~~~~~~~g~~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~ 254 (487)
T PLN02676 178 M-VIDYYNYD--YEFAEPPRVTSLKNTEPNPTFVDFGEDEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVR 254 (487)
T ss_pred H-HHHHHhcc--ceeccCccccchhhcCcccccccCCCceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCEee
Confidence 1 12222211 112333344444433222222 233444555 689999999999843 599999999
Q ss_pred EEEecCCcEEEEE-CCEEEEecEEEEcCChhhHhhccccCCCCCcHHHHHHHHhcCCccEEEEEEEecCcccccCCCcce
Q 004458 379 TIKYGNEGVEVIA-GDQMFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFWGEELDTFG 457 (752)
Q Consensus 379 ~I~~~~~gv~V~~-~g~~~~AD~VV~AvPl~vLk~~~i~f~P~Lp~~k~~ai~~l~~g~~~kV~L~fd~~fW~~~~~~fg 457 (752)
+|++++++|+|++ +|++++||+||+|+|+++|+...+.|.|+||+.+.++|++++++.++||++.|+++||+++....+
T Consensus 255 ~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~ 334 (487)
T PLN02676 255 EISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWPSGPGTEF 334 (487)
T ss_pred EEEEcCCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCCCCCCcee
Confidence 9999999999977 777999999999999999987679999999999999999999999999999999999987432222
Q ss_pred eeccCCCCCceEEEEeec-cccCCCcEEEEEeccchhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCCCCeeEEEEecCC
Q 004458 458 CLNEQSSKRGEFFLFYGY-HTVSGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGS 536 (752)
Q Consensus 458 ~l~~~~~~~~~~~~~~~~-~~~~g~~vL~~~~~g~~a~~~~~lsdeel~~~vl~~L~~if~~~~~~vp~p~~~~v~rW~~ 536 (752)
.+..+. .++.+..|+.. ..+++..+|.+++.|+.+..+..++++++++.+++.|+++||+ .++.|+.+..++|..
T Consensus 335 ~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~~g~---~~~~p~~~~~~~W~~ 410 (487)
T PLN02676 335 FLYAHE-RRGYYPFWQHLENEYPGSNVLFVTVTDEESRRIEQQPDSETKAEIMEVLRKMFGP---NIPEATDILVPRWWS 410 (487)
T ss_pred eeeecc-ccccchhhhhcccCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHhCC---CCCCcceEEecccCC
Confidence 222111 11111222211 1234556888999999999999999999999999999999975 367899999999999
Q ss_pred CCCCCCCCCCCcccCCCCchHHhhcccCCcEEEecccccCcCCcchHHHHHHHHHHHHHHHHHhhccCC
Q 004458 537 DPFTHGSYSHVRVRSSGSDYDILAESVGSRLFFAGEATTRQYPATMHGAYLSGLREASRILRATRVQKY 605 (752)
Q Consensus 537 dp~~~Gsys~~~pg~~~~~~~~l~~pv~~~L~fAGe~ts~~~~g~veGAl~SG~rAA~~Il~~l~~~~~ 605 (752)
|||+.|+|+++.||.....++.+++|+ +|||||||+|+..|+||||||+.||.|||.+|++.+...+.
T Consensus 411 dp~s~Gsys~~~pG~~~~~~~~L~~P~-gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~~~~~ 478 (487)
T PLN02676 411 NRFFKGSYSNWPIGVSRYEFDQIRAPV-GRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIKKKKC 478 (487)
T ss_pred CCCCCcccCCCCCCCChhHHHHHhCCC-CceEEeccccccccccchHHHHHHHHHHHHHHHHHhccCcc
Confidence 999999999999998878889999999 89999999999889999999999999999999999866544
No 9
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.1e-49 Score=426.97 Aligned_cols=430 Identities=32% Similarity=0.475 Sum_probs=319.1
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCC-eEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHHHHHcC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGF-KVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLS 238 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~-~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L~~~LG 238 (752)
....+|+|||||+|||+||.+|.+.|+ +|+|||+.+|+|||++|+.+.+ ..+|+||+|++|..+||+..+.++.|
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d----~~ielGAqwihG~~gNpVY~la~~~g 94 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFAD----GVIELGAQWIHGEEGNPVYELAKEYG 94 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCC----CeEeecceeecCCCCChHHHHHHHhC
Confidence 345699999999999999999997765 8999999999999999999986 48999999999999999999999998
Q ss_pred -CCccccc----CCCceecCCCccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHH-HHHHHHhhCCHH-
Q 004458 239 -IPLHKVR----DNCPLYKPDGAPVNKEIDSKVEFIFNKLLDKVMELRKIKGGFANDVSLGSVLET-LRQLYAVARSTE- 311 (752)
Q Consensus 239 -l~~~~~~----~~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~sl~e~l~~-l~~~~~~~~s~~- 311 (752)
++..... ........+|..++......+...+..+.. ..++. .-..+.-|+++++.. +........++.
T Consensus 95 ~~~~~~~tg~~~~~~~~~~~~g~~V~~~~~~~~~~~~~~~~~---~~r~~-~~~~~~~SvG~~ln~~~~~~~~~~e~~~~ 170 (498)
T KOG0685|consen 95 DLKLLEVTGPAYVDNFHTRSNGEVVPEELLDELNEITVTLSD---KLREA-EIAHDEGSVGEYLNSEFWDELRGPENPEI 170 (498)
T ss_pred ccceeccCCccccceeEEEecCccCcHHHHHHHHHHHHhhhh---hcccc-cccCccccHHHHHHHHHHHHhccccccch
Confidence 3222111 112223456666655433332222222111 11111 111355688888764 222211111222
Q ss_pred H----HHHHHHHHHhh-hhccCCCchhhhhhccccCCCccCCC--CceecCCCHHHHHHHHHcCC-----------cEEc
Q 004458 312 E----RELLDWHLANL-EYANAGCLSDLSATYWDQDDPYEMGG--DHCFLAGGNWRLIKALCEGV-----------PIFY 373 (752)
Q Consensus 312 ~----~~~l~~~~~~l-e~~~~~~l~~ls~~~~~~~~~~~~~g--~~~~~~gG~~~L~~aLa~gl-----------~I~l 373 (752)
+ .+.++..+... ....++.++.++..... ...+..| .....+.|+..+.+-|++.+ .|++
T Consensus 171 ~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~~--ey~~~~ge~~~~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~ 248 (498)
T KOG0685|consen 171 DKTLAEEILNVYFKVECSITGADNLSEVSLRALL--EYTECPGEELLIWNKKGYKRILKLLMAVIPAQNIELGLWKRIHL 248 (498)
T ss_pred hhHHHHHHHHHHHHHheeeeccCchhhhhhhhcc--ceeecCchhhheechhHHHHHHHHHhccCCCcchhcCchhhhcc
Confidence 2 22232222111 22234456666554321 1123344 55677889999999998733 2566
Q ss_pred CceEEEEEecC-CcEEEEE-CCEEEEecEEEEcCChhhHhhc-cccCCCCCcHHHHHHHHhcCCccEEEEEEEecCcccc
Q 004458 374 EKTVNTIKYGN-EGVEVIA-GDQMFQADMVLCTVPLGVLKEK-TIKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFWG 450 (752)
Q Consensus 374 n~~V~~I~~~~-~gv~V~~-~g~~~~AD~VV~AvPl~vLk~~-~i~f~P~Lp~~k~~ai~~l~~g~~~kV~L~fd~~fW~ 450 (752)
+++|.+|...+ +.|.|++ ||+.+.||+||||+++++|+.. .--|+|+||..|++||+++++|+.+|++|.|+++||+
T Consensus 249 ~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp 328 (498)
T KOG0685|consen 249 NTRVENINWKNTGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWP 328 (498)
T ss_pred cccceeeccCCCCcEEEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHhccCCccceEEEEccCCCCC
Confidence 69999999886 4588876 9999999999999999999974 3469999999999999999999999999999999999
Q ss_pred cCCCcceeeccCCC---CCc-------eEEEEeeccccCCCcEEEEEeccchhhhhccCCHHHHHHHHHHHHHHhcCCCC
Q 004458 451 EELDTFGCLNEQSS---KRG-------EFFLFYGYHTVSGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPKG 520 (752)
Q Consensus 451 ~~~~~fg~l~~~~~---~~~-------~~~~~~~~~~~~g~~vL~~~~~g~~a~~~~~lsdeel~~~vl~~L~~if~~~~ 520 (752)
.+...+-.+..+.. .+. .++.|...+.++ .+|.+|++|..+..++.+||+++.+.++..|++++++.
T Consensus 329 ~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~~~--~vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~n~- 405 (498)
T KOG0685|consen 329 SDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVSWAP--NVLLGWIAGREARHMETLSDEEVLEGLTKLLRKFLKNP- 405 (498)
T ss_pred CCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcCcch--hhhheeccCCcceehhhCCHHHHHHHHHHHHHHhcCCC-
Confidence 98887777765543 111 123344333222 68999999999999999999999999999999999853
Q ss_pred CCCCCCeeEEEEecCCCCCCCCCCCCCcccCCCCchHHhhcccC-------CcEEEecccccCcCCcchHHHHHHHHHHH
Q 004458 521 IDVPDPLQTICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVG-------SRLFFAGEATTRQYPATMHGAYLSGLREA 593 (752)
Q Consensus 521 ~~vp~p~~~~v~rW~~dp~~~Gsys~~~pg~~~~~~~~l~~pv~-------~~L~fAGe~ts~~~~g~veGAl~SG~rAA 593 (752)
++|.|..+..+.|.++||.+|||||..+|+.+.+-+.++.|.. +.|.||||+|++.++.|+|||++||.|+|
T Consensus 406 -~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA 484 (498)
T KOG0685|consen 406 -EIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQILFAGEATHRTFYSTTHGAVLSGWREA 484 (498)
T ss_pred -CCCCchhhhhhcccCCCccCceeeEeeccccccccchhhccCCccccCCCceEEEccccccccceehhhhhHHhhHHHH
Confidence 7899999999999999999999999999988887777766653 58999999999999999999999999999
Q ss_pred HHHHHHhhcc
Q 004458 594 SRILRATRVQ 603 (752)
Q Consensus 594 ~~Il~~l~~~ 603 (752)
++++..+...
T Consensus 485 ~RL~~~y~~~ 494 (498)
T KOG0685|consen 485 DRLLEHYESS 494 (498)
T ss_pred HHHHHHHHhh
Confidence 9999977544
No 10
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-45 Score=394.26 Aligned_cols=415 Identities=27% Similarity=0.371 Sum_probs=290.7
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHHHHHcCC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLSI 239 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L~~~LGl 239 (752)
++..+|||||||++||+||++|.+.|++|+|+|+++|+|||+.|.+..+ ...|+|++++.+ +.+++..+++++|+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~~----~~~d~gG~~i~p-~~~~~l~~~k~~gv 79 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGG----EYTDLGGQYINP-THDALLAYAKEFGV 79 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEeccc----eeeccCCcccCc-cchhhhhhHHhcCC
Confidence 4678999999999999999999999999999999999999999999854 689999999988 44678889999999
Q ss_pred CcccccCCC-ceecCCCcccccc-ch----HHHHHHHHHHHHHHHHHHHHhcCC------CCCCCHHHHHHHHHHHHHhh
Q 004458 240 PLHKVRDNC-PLYKPDGAPVNKE-ID----SKVEFIFNKLLDKVMELRKIKGGF------ANDVSLGSVLETLRQLYAVA 307 (752)
Q Consensus 240 ~~~~~~~~~-~~~~~~G~~~~~~-~~----~~~~~~~~~ll~~~~~~~~~~~~~------~~~~sl~e~l~~l~~~~~~~ 307 (752)
+..++...- .+....+..-..+ .. ..+......+.............. .+.+++.+|
T Consensus 80 ~~~~fi~~g~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~~~~~a~~~~~~~~~~t~~~~e~~~~~~~~W----------- 148 (450)
T COG1231 80 PLEPFIRDGDNVIGYVGSSKSTPKRSLTAAADVRGLVAELEAKARSAGELDPGLTPEDRELDLESLAAW----------- 148 (450)
T ss_pred CCCceeccCcccccccccccccchhccchhhhhcchhhhhhhhhhcccccCcccCcchhhhhhHHHHhh-----------
Confidence 988764311 1111111100000 00 000111111111111100000000 001111111
Q ss_pred CCHHHHHHHHHHH-HhhhhccC--CC---chh-hhhhccc---cCCCccCCCCceecCCCHHHHHHHHHcCC--cEEcCc
Q 004458 308 RSTEERELLDWHL-ANLEYANA--GC---LSD-LSATYWD---QDDPYEMGGDHCFLAGGNWRLIKALCEGV--PIFYEK 375 (752)
Q Consensus 308 ~s~~~~~~l~~~~-~~le~~~~--~~---l~~-ls~~~~~---~~~~~~~~g~~~~~~gG~~~L~~aLa~gl--~I~ln~ 375 (752)
......-+..++ ..+++... .. +.. +....|. ....++....++...|||+.|++++++.+ .|++++
T Consensus 149 -~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~~~GGmd~la~Afa~ql~~~I~~~~ 227 (450)
T COG1231 149 -KTSSLRGLSRDPGARVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRLGGMDQLAEAFAKQLGTRILLNE 227 (450)
T ss_pred -hhccccccccCccceeccCCCCcccccchhhhhhhhhhhhccccccccccchhhccCccHHHHHHHHHHHhhceEEecC
Confidence 000000000000 00000000 00 001 1111121 22233444455666799999999999965 699999
Q ss_pred eEEEEEecCCcEEEEECC-EEEEecEEEEcCChhhHhhccccCCCCCcHHHHHHHHhcCCccEEEEEEEecCcccccCCC
Q 004458 376 TVNTIKYGNEGVEVIAGD-QMFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFWGEELD 454 (752)
Q Consensus 376 ~V~~I~~~~~gv~V~~~g-~~~~AD~VV~AvPl~vLk~~~i~f~P~Lp~~k~~ai~~l~~g~~~kV~L~fd~~fW~~~~~ 454 (752)
+|.+|.+.+++|+|+++. +++.+|+||||+|+.++.+ |.|.|++|+.++++++.+.|++.+|+.+.|+++||+++..
T Consensus 228 ~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~q--I~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~~ 305 (450)
T COG1231 228 PVRRIDQDGDGVTVTADDVGQYVADYVLVTIPLAILGQ--IDFAPLLPAEYKQAAKGVPYGSATKIGVAFSRPFWEEAGI 305 (450)
T ss_pred ceeeEEEcCCeEEEEeCCcceEEecEEEEecCHHHHhh--cccCCCCCHHHHHHhcCcCcchheeeeeecCchhhhhccc
Confidence 999999999999999966 8999999999999999974 8999999999999999999999999999999999998762
Q ss_pred cceeeccCCCCCceEEEEeecc-ccCCCcEEE-EEeccchhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCCCCeeE-EE
Q 004458 455 TFGCLNEQSSKRGEFFLFYGYH-TVSGGPVLN-ALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQT-IC 531 (752)
Q Consensus 455 ~fg~l~~~~~~~~~~~~~~~~~-~~~g~~vL~-~~~~g~~a~~~~~lsdeel~~~vl~~L~~if~~~~~~vp~p~~~-~v 531 (752)
..|....+.. ..+.+++.. ...|..+|. +|..|+.|..|..++++++++.++..|.++||+. ...|.+. ..
T Consensus 306 l~G~~~tD~~---~~~i~~~s~~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~g~~---a~~~f~~~~~ 379 (450)
T COG1231 306 LGGESLTDLG---LGFISYPSAPFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAKLFGDE---AADPFDYGAS 379 (450)
T ss_pred CCceEeecCC---cceEecCccccCCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhhhCChh---hcccccccee
Confidence 3333333322 234444433 224445555 5788999999999999999999999999999864 3455565 78
Q ss_pred EecCCCCCCCCCCCCCcccCCCCchHHhhcccCCcEEEec-ccccCcCCcchHHHHHHHHHHHHHHHHHhh
Q 004458 532 TRWGSDPFTHGSYSHVRVRSSGSDYDILAESVGSRLFFAG-EATTRQYPATMHGAYLSGLREASRILRATR 601 (752)
Q Consensus 532 ~rW~~dp~~~Gsys~~~pg~~~~~~~~l~~pv~~~L~fAG-e~ts~~~~g~veGAl~SG~rAA~~Il~~l~ 601 (752)
.+|.++||+.|+|..+.+|+....|+.+..|. +|||||| ||++. ++||+|||++||.+||.+|...+.
T Consensus 380 ~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~-gRIh~AgtEhas~-~~Gw~eGAi~Sg~~AA~ei~~~l~ 448 (450)
T COG1231 380 VDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPH-GRIHFAGTEHASE-FGGWLEGAIRSGQRAAAEIHALLS 448 (450)
T ss_pred eecccCCcCCccccccCCcccccccccccCCC-CceEEeeeccccc-ccchhHHHHHHHHHHHHHHHHhhc
Confidence 89999999999999999999999999999998 9999999 66665 899999999999999999988763
No 11
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=100.00 E-value=1.5e-38 Score=354.97 Aligned_cols=418 Identities=30% Similarity=0.405 Sum_probs=272.5
Q ss_pred hhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHHHHHcCCCccc--c--cCC
Q 004458 172 LAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLSIPLHK--V--RDN 247 (752)
Q Consensus 172 ~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L~~~LGl~~~~--~--~~~ 247 (752)
+|||+||++|+++|++|+|||+++++|||++|++.+. .++.+|+|++++++.+.+ +..++.++|+.... . ...
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~--~g~~~e~G~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~ 77 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDN--PGFTFELGAHRFFGMYPN-LLNLIDELGLELSLETFPFPQI 77 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETT--TTEEEESSS-EEETTSHH-HHHHHHHHTHHTTEEEEEESSE
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCc--cceeecCCcccccccchh-hHHHHHHhhhcccccccccccc
Confidence 6999999999999999999999999999999999982 128999999999988766 67788888874222 1 111
Q ss_pred CceecCCCcccc--ccchHHHH----------HHHHHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHH-HhhCCHH
Q 004458 248 CPLYKPDGAPVN--KEIDSKVE----------FIFNKLLDKVMELRKIKGGF---ANDVSLGSVLETLRQLY-AVARSTE 311 (752)
Q Consensus 248 ~~~~~~~G~~~~--~~~~~~~~----------~~~~~ll~~~~~~~~~~~~~---~~~~sl~e~l~~l~~~~-~~~~s~~ 311 (752)
...+...+.... ........ .................... ............+..+. .......
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (450)
T PF01593_consen 78 PFVYWPFGDGRPPWPPSQLPRNLNEFAALISLARFFRLLERLNKLRQMLDPFFNKAEPEFLEDDLESFLEFLDSQSFSEI 157 (450)
T ss_dssp EEEEEEEEEEEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeccccccccccccccccccccchhhhhhccccccccccccchhccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 122211111111 00000000 00000000000000000000 00000000000000000 0000011
Q ss_pred -----HHHHHHHHHHhhhhccCCCchhhhhhccccC-CC-ccCCCCceecCCCHHHHHHHHHc--CCcEEcCceEEEEEe
Q 004458 312 -----ERELLDWHLANLEYANAGCLSDLSATYWDQD-DP-YEMGGDHCFLAGGNWRLIKALCE--GVPIFYEKTVNTIKY 382 (752)
Q Consensus 312 -----~~~~l~~~~~~le~~~~~~l~~ls~~~~~~~-~~-~~~~g~~~~~~gG~~~L~~aLa~--gl~I~ln~~V~~I~~ 382 (752)
....+.+............+.......+... .. ....+......|++..+...+.+ |.+|++|++|++|+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~ 237 (450)
T PF01593_consen 158 FRESLFRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGMGGLSLALALAAEELGGEIRLNTPVTRIER 237 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEETTTTHHHHHHHHHHHGGGEESSEEEEEEEE
T ss_pred hHHHHHHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeecccchhHHHHHHHhhcCceeecCCcceeccc
Confidence 1111111111111111111222222222111 00 11223334456677777666665 679999999999999
Q ss_pred cCCcEEEEE-CCEEEEecEEEEcCChhhHhhccccCCCCCcHHHHHHHHhcCCccEEEEEEEecCcccccCCCcceeecc
Q 004458 383 GNEGVEVIA-GDQMFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFWGEELDTFGCLNE 461 (752)
Q Consensus 383 ~~~gv~V~~-~g~~~~AD~VV~AvPl~vLk~~~i~f~P~Lp~~k~~ai~~l~~g~~~kV~L~fd~~fW~~~~~~fg~l~~ 461 (752)
++++|.|+. +|++++||+||+|+|++.+++ +.+.|++|..+.++++.++|.+..+|++.|+++||+.+...++++..
T Consensus 238 ~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p~l~~~~~~a~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~ 315 (450)
T PF01593_consen 238 EDGGVTVTTEDGETIEADAVISAVPPSVLKN--ILLLPPLPEDKRRAIENLPYSSVSKVFLGFDRPFWPPDIDFFGILYS 315 (450)
T ss_dssp ESSEEEEEETTSSEEEESEEEE-S-HHHHHT--SEEESTSHHHHHHHHHTEEEEEEEEEEEEESSGGGGSTTTESEEEEE
T ss_pred cccccccccccceEEecceeeecCchhhhhh--hhhcccccccccccccccccCcceeEEEeeecccccccccccceecc
Confidence 999999876 788999999999999999985 78999999999999999999999999999999999987667787777
Q ss_pred CCCCCceEEEEeecccc--CCCcEEEEEeccchhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCCCCeeEEEEecCCCCC
Q 004458 462 QSSKRGEFFLFYGYHTV--SGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDPF 539 (752)
Q Consensus 462 ~~~~~~~~~~~~~~~~~--~g~~vL~~~~~g~~a~~~~~lsdeel~~~vl~~L~~if~~~~~~vp~p~~~~v~rW~~dp~ 539 (752)
+..... .+++.....+ .+..++++|+.++.+..+..++++++++.++++|+++++. ..+++|.++.+++|..+++
T Consensus 316 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~w~~~~~ 392 (450)
T PF01593_consen 316 DGFSPI-GYVSDPSKFPGRPGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRKILPG--ASIPDPIDITVTRWSRDPY 392 (450)
T ss_dssp SSTSSE-EEEEEECCTTSCTTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHHHHTT--GGGGEESEEEEEECTTSTT
T ss_pred cCcccc-ccccccccCcccccCCcceeeeeccccchhcccchhhhHHHHHHHhhhcccc--ccccccccccccccccccc
Confidence 652222 2222222222 3577899999988888999999999999999999999984 2467888999999999999
Q ss_pred CCCCCCCCcccCCCCchHHhhcccCCcEEEecccccCcCCcchHHHHHHHHHHHHHHH
Q 004458 540 THGSYSHVRVRSSGSDYDILAESVGSRLFFAGEATTRQYPATMHGAYLSGLREASRIL 597 (752)
Q Consensus 540 ~~Gsys~~~pg~~~~~~~~l~~pv~~~L~fAGe~ts~~~~g~veGAl~SG~rAA~~Il 597 (752)
..|+|++..++.....++.+.+|+.+||||||||+++++++|++||+.||.+||++|+
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 393 PRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp TSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 9999998888865446788899985599999999998777999999999999999986
No 12
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=100.00 E-value=3.5e-36 Score=342.51 Aligned_cols=416 Identities=17% Similarity=0.189 Sum_probs=276.3
Q ss_pred CCcEEEECCChhHHHHHHHHHhC----CCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHHHHHc
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSF----GFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQL 237 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~----g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L~~~L 237 (752)
+++|+|||||+|||+||+.|++. |++|+|||+++++|||++|.+.+| +.+|.|++++.+.+.+ +..+++++
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g----~~~e~G~~~~~~~~~~-~~~l~~~l 76 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDG----YLIERGPDSFLERKKS-APDLVKDL 76 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCC----EEEecCccccccCChH-HHHHHHHc
Confidence 46899999999999999999999 999999999999999999998765 7899999999987654 88899999
Q ss_pred CCCccccc--CCCce-ecCCCccccccchH--HHHHHHHHHHHHHHHHHHHh--cCCCCCCCHHHHHHHHHH--HHHhh-
Q 004458 238 SIPLHKVR--DNCPL-YKPDGAPVNKEIDS--KVEFIFNKLLDKVMELRKIK--GGFANDVSLGSVLETLRQ--LYAVA- 307 (752)
Q Consensus 238 Gl~~~~~~--~~~~~-~~~~G~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~--~~~~~~~sl~e~l~~l~~--~~~~~- 307 (752)
|++..... ....+ +..+|+.++.+... .+...+..+.+.+....... .....+.|+.+|+..... +....
T Consensus 77 gl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~e~l~~~~g~~~~~~~~ 156 (462)
T TIGR00562 77 GLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGKLRAGMDFIRPASPGKDESVEEFVRRRFGDEVVENLI 156 (462)
T ss_pred CCCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhhHHhhhhhccCCCCCCCcCHHHHHHHhcCHHHHHHHH
Confidence 99765432 22223 33337765443221 11000001111111111111 112346899999864210 00000
Q ss_pred ---------CCHHHHHHHH--HHHHhhhhccCCCchhh-hhhccccC---CCc-cCCCC-ceecCCCHHHHHHHHHcCC-
Q 004458 308 ---------RSTEERELLD--WHLANLEYANAGCLSDL-SATYWDQD---DPY-EMGGD-HCFLAGGNWRLIKALCEGV- 369 (752)
Q Consensus 308 ---------~s~~~~~~l~--~~~~~le~~~~~~l~~l-s~~~~~~~---~~~-~~~g~-~~~~~gG~~~L~~aLa~gl- 369 (752)
.++....... ..+...+.........+ ........ ..+ ...|. ...+.||+++|+++|++.+
T Consensus 157 ~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~ 236 (462)
T TIGR00562 157 EPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATGLETLPEEIEKRLK 236 (462)
T ss_pred HHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEecchhHHHHHHHHHHHhc
Confidence 1111111100 00000000000000000 00000000 001 11122 5779999999999998854
Q ss_pred --cEEcCceEEEEEecCCcEEEEE-CCEEEEecEEEEcCChhhHhhccccCCCCCcHHHHHHHHhcCCccEEEEEEEecC
Q 004458 370 --PIFYEKTVNTIKYGNEGVEVIA-GDQMFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFGLLNKVAMVFPY 446 (752)
Q Consensus 370 --~I~ln~~V~~I~~~~~gv~V~~-~g~~~~AD~VV~AvPl~vLk~~~i~f~P~Lp~~k~~ai~~l~~g~~~kV~L~fd~ 446 (752)
+|++|++|++|..++++|+|++ +|+++.||+||+|+|+..+.. +.|++|+.+.+++.++.|+++.+|.+.|++
T Consensus 237 ~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~----ll~~~~~~~~~~l~~l~~~~~~~v~l~~~~ 312 (462)
T TIGR00562 237 LTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKAAAG----LLSELSNSASSHLDKIHSPPVANVNLGFPE 312 (462)
T ss_pred cCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHHHHH----HhcccCHHHHHHHhcCCCCceEEEEEEEch
Confidence 6999999999999999999876 667899999999999999875 346788889999999999999999999999
Q ss_pred cccccCCCcceeeccCCCCCceEEEEee-----ccccCCCcEEEEEeccchhhhhccCCHHHHHHHHHHHHHHhcCCCCC
Q 004458 447 VFWGEELDTFGCLNEQSSKRGEFFLFYG-----YHTVSGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPKGI 521 (752)
Q Consensus 447 ~fW~~~~~~fg~l~~~~~~~~~~~~~~~-----~~~~~g~~vL~~~~~g~~a~~~~~lsdeel~~~vl~~L~~if~~~~~ 521 (752)
++|+.+...+|++.+.........+.++ ...+++..++++++.|..+..+.+++++++++.+++.|+++++..
T Consensus 313 ~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~gi~-- 390 (462)
T TIGR00562 313 GSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKKVLNIN-- 390 (462)
T ss_pred HHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHHHHHhCCC--
Confidence 9998766778888765432222222222 234456668888998877778888999999999999999999742
Q ss_pred CCCCCeeEEEEecCCCCCCCCCCCCCcccCCCCchHH----hhcccCCcEEEecccccCcCCcchHHHHHHHHHHHHHHH
Q 004458 522 DVPDPLQTICTRWGSDPFTHGSYSHVRVRSSGSDYDI----LAESVGSRLFFAGEATTRQYPATMHGAYLSGLREASRIL 597 (752)
Q Consensus 522 ~vp~p~~~~v~rW~~dp~~~Gsys~~~pg~~~~~~~~----l~~pv~~~L~fAGe~ts~~~~g~veGAl~SG~rAA~~Il 597 (752)
.+|....+++|.. +|....+|+. ...+. +..+. ++||+||+++. ..+|++|+.||.++|++|+
T Consensus 391 --~~p~~~~v~rw~~------a~P~~~~g~~-~~~~~i~~~l~~~~-~~l~l~G~~~~---g~~i~~~i~sg~~~a~~~~ 457 (462)
T TIGR00562 391 --NEPEMLCVTRWHR------AIPQYHVGHD-QRLKEARELLESAY-PGVFLTGNSFE---GVGIPDCIDQGKAAASDVL 457 (462)
T ss_pred --CCCcEEEEeEccc------cCCCCCCChH-HHHHHHHHHHHhhC-CCEEEeccccC---CCcHHHHHHHHHHHHHHHH
Confidence 2478889999984 3333345532 11222 33333 69999999986 3589999999999999998
Q ss_pred HHhh
Q 004458 598 RATR 601 (752)
Q Consensus 598 ~~l~ 601 (752)
..+.
T Consensus 458 ~~~~ 461 (462)
T TIGR00562 458 TFLF 461 (462)
T ss_pred Hhhc
Confidence 8763
No 13
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=100.00 E-value=9.6e-36 Score=339.04 Aligned_cols=406 Identities=16% Similarity=0.200 Sum_probs=265.7
Q ss_pred CcEEEECCChhHHHHHHHHHhC------CCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHHHHH
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSF------GFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQ 236 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~------g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L~~~ 236 (752)
++|+|||||+|||+||++|++. |++|+|||+++++|||++|.+..| +.+|+|++++.+.+. .+..|+++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g----~~~e~G~~~i~~~~~-~~~~l~~~ 76 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKD----FIMESGADSIVARNE-HVMPLVKD 76 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCC----EEEecCcHHHhcCCH-HHHHHHHH
Confidence 4799999999999999999986 379999999999999999998765 789999999987764 47789999
Q ss_pred cCCCcccccC--CCceecCCCccccccchH------HHHHHHH-HH---HHHHHHHHHHhc---CCCCCCCHHHHHHHHH
Q 004458 237 LSIPLHKVRD--NCPLYKPDGAPVNKEIDS------KVEFIFN-KL---LDKVMELRKIKG---GFANDVSLGSVLETLR 301 (752)
Q Consensus 237 LGl~~~~~~~--~~~~~~~~G~~~~~~~~~------~~~~~~~-~l---l~~~~~~~~~~~---~~~~~~sl~e~l~~l~ 301 (752)
||++...+.. ...+++.+|...+.+... .+...+. .+ ......+.+... ...+++|+.+|++...
T Consensus 77 lgl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~ 156 (463)
T PRK12416 77 LNLEEEMVYNETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSSTLVSTKGKIVALKDFITKNKEFTKDTSLALFLESFL 156 (463)
T ss_pred cCCccceecCCCCceEEEECCeEEECCCCCeecCCCChHHhhcCCcCCHHHHHHhhhhhccCCCCCCCCCCHHHHHHHhc
Confidence 9998664422 223333344433221110 0111110 01 111112222221 1246789999987521
Q ss_pred HHHHhhCCHHHHHHHHHHHHhhhhccCCCchhhh----hhcc------------ccCCCc--cCCCCceecCCCHHHHHH
Q 004458 302 QLYAVARSTEERELLDWHLANLEYANAGCLSDLS----ATYW------------DQDDPY--EMGGDHCFLAGGNWRLIK 363 (752)
Q Consensus 302 ~~~~~~~s~~~~~~l~~~~~~le~~~~~~l~~ls----~~~~------------~~~~~~--~~~g~~~~~~gG~~~L~~ 363 (752)
.......++.+.+..+.......++..+ +..+ .....+ .....+++++||+++|++
T Consensus 157 ------~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~ 230 (463)
T PRK12416 157 ------GKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIID 230 (463)
T ss_pred ------CHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHHHHH
Confidence 1122223333332222111111111100 0000 000000 112235678999999999
Q ss_pred HHHcCC---cEEcCceEEEEEecCCcEEEEE-CCEEEEecEEEEcCChhhHhhccccCCCCCcHHHHHHHHhcCCccEEE
Q 004458 364 ALCEGV---PIFYEKTVNTIKYGNEGVEVIA-GDQMFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFGLLNK 439 (752)
Q Consensus 364 aLa~gl---~I~ln~~V~~I~~~~~gv~V~~-~g~~~~AD~VV~AvPl~vLk~~~i~f~P~Lp~~k~~ai~~l~~g~~~k 439 (752)
+|++.+ +|++|++|++|++++++|.|++ +++++.||+||+|+|+..+.+ +.+.|+++ +.+..+.+.++.+
T Consensus 231 ~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~--ll~~~~l~----~~~~~~~~~~~~~ 304 (463)
T PRK12416 231 RLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHDIAET--LLQSNELN----EQFHTFKNSSLIS 304 (463)
T ss_pred HHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCHHHHHh--hcCCcchh----HHHhcCCCCceEE
Confidence 999866 5999999999999999998876 677899999999999999875 44566664 4578888999999
Q ss_pred EEEEecCcccccCCCcceeeccCCCCCceE-EEEeec---cccCCCcEEEE-Eec--cchhhhhccCCHHHHHHHHHHHH
Q 004458 440 VAMVFPYVFWGEELDTFGCLNEQSSKRGEF-FLFYGY---HTVSGGPVLNA-LVA--GEAAKTFESMDPSFLLHRVLNVL 512 (752)
Q Consensus 440 V~L~fd~~fW~~~~~~fg~l~~~~~~~~~~-~~~~~~---~~~~g~~vL~~-~~~--g~~a~~~~~lsdeel~~~vl~~L 512 (752)
|++.|++++|..+.+.||++.+........ +.|.+. ..+++..+++. ++. ++.+..+.+++++++++.++++|
T Consensus 305 v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~~~~~L 384 (463)
T PRK12416 305 IYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELVRVALYDI 384 (463)
T ss_pred EEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHHHHHHHHHHHH
Confidence 999999888765556789887755422111 122211 11234444444 443 46677788999999999999999
Q ss_pred HHhcCCCCCCCCCCeeEEEEecCC-CCCCCCCCCCCcccCCCC---chHHhhcccCCcEEEecccccCcCCcchHHHHHH
Q 004458 513 RGIYNPKGIDVPDPLQTICTRWGS-DPFTHGSYSHVRVRSSGS---DYDILAESVGSRLFFAGEATTRQYPATMHGAYLS 588 (752)
Q Consensus 513 ~~if~~~~~~vp~p~~~~v~rW~~-dp~~~Gsys~~~pg~~~~---~~~~l~~pv~~~L~fAGe~ts~~~~g~veGAl~S 588 (752)
+++||.. ..|+.+.+++|.. .|. | .+++... ..+.+..+. ++|||||+++.. .+|++|+.|
T Consensus 385 ~~~lG~~----~~p~~~~v~~W~~a~P~----y---~~~~~~~~~~~~~~l~~~~-~~l~~aG~~~~g---~~i~~ai~s 449 (463)
T PRK12416 385 EKSLGIK----GEPEVVEVTNWKDLMPK----Y---HLEHNQAVQSLQEKMMNLY-PNIYLAGASYYG---VGIGACIGN 449 (463)
T ss_pred HHHhCCC----CCceEEEEEEccccCCC----c---CcCHHHHHHHHHHHHHhhC-CCeEEecccccc---ccHHHHHHH
Confidence 9999743 4788899999985 332 2 2332110 112344444 799999999873 579999999
Q ss_pred HHHHHHHHHHHh
Q 004458 589 GLREASRILRAT 600 (752)
Q Consensus 589 G~rAA~~Il~~l 600 (752)
|.+||++|++.+
T Consensus 450 g~~aA~~i~~~~ 461 (463)
T PRK12416 450 GKNTANEIIATL 461 (463)
T ss_pred HHHHHHHHHHHh
Confidence 999999999764
No 14
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=100.00 E-value=6.6e-35 Score=330.66 Aligned_cols=401 Identities=22% Similarity=0.248 Sum_probs=258.5
Q ss_pred CcEEEECCChhHHHHHHHHHhCC--CeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHHHHHcCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFG--FKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLSIP 240 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g--~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L~~~LGl~ 240 (752)
++|+|||||+|||+||+.|++.| ++|+|||+++++|||++|.+.+| +.+|+|+|++.+.+.+ +..+++++|++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g----~~~d~G~~~~~~~~~~-~~~l~~~lgl~ 75 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDG----FPIELGPESFLARKPS-APALVKELGLE 75 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCC----eEEecChHHhcCCcHH-HHHHHHHcCCc
Confidence 47999999999999999999988 89999999999999999999875 7899999988876654 88899999997
Q ss_pred ccccc--CCCceecCCCccccccchH-------HHHHHHHHHHHHHHHHHHHh------cCCCCCCCHHHHHHHHHHHHH
Q 004458 241 LHKVR--DNCPLYKPDGAPVNKEIDS-------KVEFIFNKLLDKVMELRKIK------GGFANDVSLGSVLETLRQLYA 305 (752)
Q Consensus 241 ~~~~~--~~~~~~~~~G~~~~~~~~~-------~~~~~~~~ll~~~~~~~~~~------~~~~~~~sl~e~l~~l~~~~~ 305 (752)
..... .....++.+|+....+... ........++....+++... ....++.|+++|+....
T Consensus 76 ~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~l~~~~---- 151 (451)
T PRK11883 76 DELVANTTGQSYIYVNGKLHPIPPGTVMGIPTSIAPFLFAGLVSPIGKLRAAADLRPPRWKPGQDQSVGAFFRRRF---- 151 (451)
T ss_pred cceecCCCCcceEEECCeEEECCCCCeeccCCCchhhhcCCCCCHHHHHHhhCcccCCCCCCCCCcCHHHHHHHhc----
Confidence 54332 2333444566644322111 00111111221111111111 11245789999986421
Q ss_pred hhCCHHHHHHHHHHHHhhhhccCCCchhhhhhc---------------------cccCCCccCCCCceecCCCHHHHHHH
Q 004458 306 VARSTEERELLDWHLANLEYANAGCLSDLSATY---------------------WDQDDPYEMGGDHCFLAGGNWRLIKA 364 (752)
Q Consensus 306 ~~~s~~~~~~l~~~~~~le~~~~~~l~~ls~~~---------------------~~~~~~~~~~g~~~~~~gG~~~L~~a 364 (752)
.......++.+.+..+. +.....+++.. .........+..++.++||+++++++
T Consensus 152 --~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~ 226 (451)
T PRK11883 152 --GDEVVENLIEPLLSGIY---AGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIEA 226 (451)
T ss_pred --cHHHHHHHHHHhhceee---cCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHHH
Confidence 01111222222211111 01111111000 00000001123456899999999999
Q ss_pred HHcCC---cEEcCceEEEEEecCCcEEEEE-CCEEEEecEEEEcCChhhHhhccccCCCCCcHHHHHHHHhcCCccEEEE
Q 004458 365 LCEGV---PIFYEKTVNTIKYGNEGVEVIA-GDQMFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFGLLNKV 440 (752)
Q Consensus 365 La~gl---~I~ln~~V~~I~~~~~gv~V~~-~g~~~~AD~VV~AvPl~vLk~~~i~f~P~Lp~~k~~ai~~l~~g~~~kV 440 (752)
|++.+ +|++|++|++|+..+++|.|+. +|+++.||+||+|+|+.++..+ .+. +...++++++.|++..+|
T Consensus 227 l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l--~~~----~~~~~~~~~~~~~~~~~v 300 (451)
T PRK11883 227 LEEKLPAGTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLPSL--FVA----PPAFALFKTIPSTSVATV 300 (451)
T ss_pred HHHhCcCCeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHHHh--ccC----hhHHHHHhCCCCCceEEE
Confidence 99865 4999999999999998888865 7888999999999999999863 222 234788899999999999
Q ss_pred EEEecCcccccCCCcceeecc-CCCCCceEEEEee----ccccCCCcEEEEEeccchhhhhccCCHHHHHHHHHHHHHHh
Q 004458 441 AMVFPYVFWGEELDTFGCLNE-QSSKRGEFFLFYG----YHTVSGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGI 515 (752)
Q Consensus 441 ~L~fd~~fW~~~~~~fg~l~~-~~~~~~~~~~~~~----~~~~~g~~vL~~~~~g~~a~~~~~lsdeel~~~vl~~L~~i 515 (752)
++.|+++|+. ....++++.. +.........+.+ ...|.+..++..+..+.......+++++++++.+++.|+++
T Consensus 301 ~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 379 (451)
T PRK11883 301 ALAFPESATN-LPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSKV 379 (451)
T ss_pred EEEeccccCC-CCCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHHHH
Confidence 9999998732 2334565543 2211111122322 22333444444444434344456789999999999999999
Q ss_pred cCCCCCCCCCCeeEEEEecCCCCCCCCCCCCCcccCCCCchHHhhcccC--CcEEEecccccCcCCcchHHHHHHHHHHH
Q 004458 516 YNPKGIDVPDPLQTICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVG--SRLFFAGEATTRQYPATMHGAYLSGLREA 593 (752)
Q Consensus 516 f~~~~~~vp~p~~~~v~rW~~dp~~~Gsys~~~pg~~~~~~~~l~~pv~--~~L~fAGe~ts~~~~g~veGAl~SG~rAA 593 (752)
||.. ..|....+++|.. +|..+.++.. .....+..++. ++|||||+++. ++++++|+.||.++|
T Consensus 380 ~g~~----~~~~~~~~~rw~~------a~p~~~~~~~-~~~~~l~~~l~~~~~l~~aG~~~~---g~~i~~av~sg~~~a 445 (451)
T PRK11883 380 MGIT----GDPEFTIVQRWKE------AMPQYGVGHI-ERVAELRAGLPHYPGLYVAGASFE---GVGLPDCIAQAKRAA 445 (451)
T ss_pred hCCC----CCceEEEEeecCc------cCCCCCccHH-HHHHHHHHhhhhCCCEEEECcccC---CccHHHHHHHHHHHH
Confidence 9742 3677889999985 3444455531 22233333332 59999999985 457999999999999
Q ss_pred HHHHH
Q 004458 594 SRILR 598 (752)
Q Consensus 594 ~~Il~ 598 (752)
++|+.
T Consensus 446 ~~i~~ 450 (451)
T PRK11883 446 ARLLA 450 (451)
T ss_pred HHHHh
Confidence 99975
No 15
>PLN02576 protoporphyrinogen oxidase
Probab=100.00 E-value=9.6e-35 Score=333.69 Aligned_cols=410 Identities=19% Similarity=0.187 Sum_probs=268.0
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhC-CCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHHHHHcC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSF-GFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLS 238 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~-g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L~~~LG 238 (752)
...++|+|||||+|||+||++|+++ |++|+|||+++++|||++|.+.+| +.+|.|++++...+. .+..+++. |
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g----~~~d~G~~~~~~~~~-~~~~l~~~-g 83 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDG----FIWEEGPNSFQPSDP-ELTSAVDS-G 83 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCC----eEEecCCchhccCcH-HHHHHHHc-C
Confidence 3467999999999999999999999 999999999999999999998765 899999999986543 35555555 8
Q ss_pred CCccccc-C--CCceecCCCccccccchHHHHHHHHHHHHHHHHHH---HHh-----cCCCCCCCHHHHHHHHHHHHHhh
Q 004458 239 IPLHKVR-D--NCPLYKPDGAPVNKEIDSKVEFIFNKLLDKVMELR---KIK-----GGFANDVSLGSVLETLRQLYAVA 307 (752)
Q Consensus 239 l~~~~~~-~--~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~-----~~~~~~~sl~e~l~~l~~~~~~~ 307 (752)
++..... . ...+++.+|+..+.+.... ......++....+++ ... ....++.|+++|+....
T Consensus 84 l~~~~~~~~~~~~~~~~~~g~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~------ 156 (496)
T PLN02576 84 LRDDLVFPDPQAPRYVVWNGKLRPLPSNPI-DLPTFDLLSAPGKIRAGLGAFGWKRPPPPGREESVGEFVRRHL------ 156 (496)
T ss_pred ChhheecCCCCceEEEEECCEEEEcCCChH-HhcCcCcCChhHHHHHhHHHhhccCCCCCCCCCcHHHHHHHhc------
Confidence 7644321 1 2223445777655443211 110011111111111 111 11246789999987521
Q ss_pred CCHHHHHHHHHHHHhhhhccCCCchhhhhhc---------------------------cc----cCCC---ccCCCCcee
Q 004458 308 RSTEERELLDWHLANLEYANAGCLSDLSATY---------------------------WD----QDDP---YEMGGDHCF 353 (752)
Q Consensus 308 ~s~~~~~~l~~~~~~le~~~~~~l~~ls~~~---------------------------~~----~~~~---~~~~g~~~~ 353 (752)
.......++.+.+.... +...+.++... .. ..+. ...+...+.
T Consensus 157 g~~~~~~~~~p~~~~~~---~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (496)
T PLN02576 157 GDEVFERLIDPFVSGVY---AGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGS 233 (496)
T ss_pred CHHHHHHHHHHHhCcee---cCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEe
Confidence 11111222222111110 01111111000 00 0000 001234577
Q ss_pred cCCCHHHHHHHHHcCC---cEEcCceEEEEEecCCc-EEEEE---CC-EEEEecEEEEcCChhhHhhccccCCCCCcHHH
Q 004458 354 LAGGNWRLIKALCEGV---PIFYEKTVNTIKYGNEG-VEVIA---GD-QMFQADMVLCTVPLGVLKEKTIKFEPELPQRK 425 (752)
Q Consensus 354 ~~gG~~~L~~aLa~gl---~I~ln~~V~~I~~~~~g-v~V~~---~g-~~~~AD~VV~AvPl~vLk~~~i~f~P~Lp~~k 425 (752)
++||+++|+++|++.+ +|++|++|++|+..+++ |.|+. +| +++.||+||+|+|+.++..+. +++++..
T Consensus 234 ~~gG~~~L~~~la~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll----~~~~~~~ 309 (496)
T PLN02576 234 FRGGLQTLPDALAKRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEML----RPKSPAA 309 (496)
T ss_pred ccchHHHHHHHHHHhhCcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHh----cccCHHH
Confidence 8999999999999866 49999999999998886 66643 44 479999999999999998632 3456667
Q ss_pred HHHHHhcCCccEEEEEEEecCccccc------CCCcceeeccCCCCCceE-EEEee----ccccCCCcEEEEEeccchhh
Q 004458 426 VAAIDRLGFGLLNKVAMVFPYVFWGE------ELDTFGCLNEQSSKRGEF-FLFYG----YHTVSGGPVLNALVAGEAAK 494 (752)
Q Consensus 426 ~~ai~~l~~g~~~kV~L~fd~~fW~~------~~~~fg~l~~~~~~~~~~-~~~~~----~~~~~g~~vL~~~~~g~~a~ 494 (752)
.+++..+.|.++.+|.+.|++++|.. +...||.+.+........ ..+.+ ...+++..+++.|+.++.+.
T Consensus 310 ~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~~~~~ 389 (496)
T PLN02576 310 ADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGSRNT 389 (496)
T ss_pred HHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEEEEEEECCCCCc
Confidence 89999999999999999999999976 445777776543221111 12222 12344556788899988888
Q ss_pred hhccCCHHHHHHHHHHHHHHhcCCCCCCCCCCeeEEEEecCCCCCCCCCCCCCcccCCCCchHHhhccc----CCcEEEe
Q 004458 495 TFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESV----GSRLFFA 570 (752)
Q Consensus 495 ~~~~lsdeel~~~vl~~L~~if~~~~~~vp~p~~~~v~rW~~dp~~~Gsys~~~pg~~~~~~~~l~~pv----~~~L~fA 570 (752)
.+.+++++++++.++++|++++|.. ..+.|....+++|.. ++..+.+|+. ...+.+.+.. .++||||
T Consensus 390 ~~~~~s~ee~~~~~~~~L~~~~g~~--~~~~p~~~~~~~w~~------a~P~~~~g~~-~~~~~~~~~l~~~~~~~l~~a 460 (496)
T PLN02576 390 GIASASEEELVEAVDRDLRKLLLKP--GAPPPKVVGVRVWPK------AIPQYLLGHL-DVLEAAEKMEKDLGLPGLFLG 460 (496)
T ss_pred ccccCCHHHHHHHHHHHHHHHhCCC--CCCCCcEEEEeEcCc------ccCCCCcCHH-HHHHHHHHHHHhcCCCCEEEe
Confidence 8999999999999999999999853 234667777889974 2222334431 1122222211 1599999
Q ss_pred cccccCcCCcchHHHHHHHHHHHHHHHHHhh
Q 004458 571 GEATTRQYPATMHGAYLSGLREASRILRATR 601 (752)
Q Consensus 571 Ge~ts~~~~g~veGAl~SG~rAA~~Il~~l~ 601 (752)
|+|+.. .++++|+.||.++|++|+..+.
T Consensus 461 G~~~~g---~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 461 GNYRGG---VALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred ccccCC---ccHHHHHHHHHHHHHHHHHHHh
Confidence 999983 5899999999999999998764
No 16
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=6.7e-33 Score=312.47 Aligned_cols=407 Identities=20% Similarity=0.185 Sum_probs=254.2
Q ss_pred cEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHHHHHcCCCccc
Q 004458 164 SVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLSIPLHK 243 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L~~~LGl~~~~ 243 (752)
+|+|||||++||+||++|++.|++|+|||+++++||+++|++.+| +.+|.|+|++.+.+ ..+..+++++|++...
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g----~~~d~g~~~~~~~~-~~~~~l~~~lg~~~~~ 75 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGG----LPIERFYHHIFKSD-EALLELLDELGLEDKL 75 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCC----cchhhhhhhhcccc-HHHHHHHHHcCCCCce
Confidence 699999999999999999999999999999999999999998875 78999999998765 4588899999986442
Q ss_pred cc-CCCceecCCCccccccchHHHH-----HHHHHHHH--HHHHHHH-HhcCCCCCCCHHHHHHHHHHHHHhhCCHHHHH
Q 004458 244 VR-DNCPLYKPDGAPVNKEIDSKVE-----FIFNKLLD--KVMELRK-IKGGFANDVSLGSVLETLRQLYAVARSTEERE 314 (752)
Q Consensus 244 ~~-~~~~~~~~~G~~~~~~~~~~~~-----~~~~~ll~--~~~~~~~-~~~~~~~~~sl~e~l~~l~~~~~~~~s~~~~~ 314 (752)
.. .....+..+|+.++......+. .....+.. ....... ......++.|+++|++.. ..++....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~------~~~~~~~~ 149 (434)
T PRK07233 76 RWRETKTGYYVDGKLYPLGTPLELLRFPHLSLIDKFRLGLLTLLARRIKDWRALDKVPAEEWLRRW------SGEGVYEV 149 (434)
T ss_pred eeccCceEEEECCeEecCCCHHHHHcCCCCCHHHHHHhHHHHHhhhhcccccccccccHHHHHHHh------cCHHHHHH
Confidence 21 1122222344433321100000 00000000 0000000 001123568899988752 12233334
Q ss_pred HHHHHHHhhhhccCCCchhhhhhcccc-CC--Cc-cCCCCceecCCCHHHHHHHHHc-----CCcEEcCceEEEEEecCC
Q 004458 315 LLDWHLANLEYANAGCLSDLSATYWDQ-DD--PY-EMGGDHCFLAGGNWRLIKALCE-----GVPIFYEKTVNTIKYGNE 385 (752)
Q Consensus 315 ~l~~~~~~le~~~~~~l~~ls~~~~~~-~~--~~-~~~g~~~~~~gG~~~L~~aLa~-----gl~I~ln~~V~~I~~~~~ 385 (752)
++...+......+...++......... .. .. .......+++||++.++++|++ |++|++|++|++|+.+++
T Consensus 150 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~ 229 (434)
T PRK07233 150 FWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVIDGG 229 (434)
T ss_pred HHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEcCC
Confidence 444443333222222222211111000 00 00 0112356789999999999976 668999999999999888
Q ss_pred cEEE-EECCEEEEecEEEEcCChhhHhhccccCCCCCcHHHHHHHHhcCCccEEEEEEEecCcccccCCCcceeeccCCC
Q 004458 386 GVEV-IAGDQMFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFWGEELDTFGCLNEQSS 464 (752)
Q Consensus 386 gv~V-~~~g~~~~AD~VV~AvPl~vLk~~~i~f~P~Lp~~k~~ai~~l~~g~~~kV~L~fd~~fW~~~~~~fg~l~~~~~ 464 (752)
++.+ +.+++++.||+||+|+|+..+.. +.|++|+...+.++.+.|.+..++++.|++++++ .+......+.
T Consensus 230 ~~~~~~~~~~~~~ad~vI~a~p~~~~~~----ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~ 301 (434)
T PRK07233 230 GVTGVEVDGEEEDFDAVISTAPPPILAR----LVPDLPADVLARLRRIDYQGVVCMVLKLRRPLTD----YYWLNINDPG 301 (434)
T ss_pred ceEEEEeCCceEECCEEEECCCHHHHHh----hcCCCcHHHHhhhcccCccceEEEEEEecCCCCC----CceeeecCCC
Confidence 8764 45778999999999999998875 2367777778889999999999999999988543 1111111110
Q ss_pred CCceEEEEee----ccccCCCcEE--EEEeccchhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCCCCeeEEEEecCCCC
Q 004458 465 KRGEFFLFYG----YHTVSGGPVL--NALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDP 538 (752)
Q Consensus 465 ~~~~~~~~~~----~~~~~g~~vL--~~~~~g~~a~~~~~lsdeel~~~vl~~L~~if~~~~~~vp~p~~~~v~rW~~dp 538 (752)
.......+.+ ...+++..++ .+|+.++. .+..++++++++.+++.|++++|.. ....++...+.+| +
T Consensus 302 ~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~~~p~~--~~~~~~~~~~~r~---~ 374 (434)
T PRK07233 302 APFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDH--PLWQMSDEELLDRFLSYLRKMFPDF--DRDDVRAVRISRA---P 374 (434)
T ss_pred CCcceEEEecccCCccccCCceEEEEeeecCCCC--hhhcCCHHHHHHHHHHHHHHhCCCC--ChhheeeEEEEEe---c
Confidence 0100111111 1122344443 34555443 2457889999999999999999732 1123444444444 4
Q ss_pred CCCCCCCCCcccCCCCchHHhhcccCCcEEEecccccCcCCcchHHHHHHHHHHHHHHHHHhh
Q 004458 539 FTHGSYSHVRVRSSGSDYDILAESVGSRLFFAGEATTRQYPATMHGAYLSGLREASRILRATR 601 (752)
Q Consensus 539 ~~~Gsys~~~pg~~~~~~~~l~~pv~~~L~fAGe~ts~~~~g~veGAl~SG~rAA~~Il~~l~ 601 (752)
++.+.| .+|. ....+.+.+|+ +||||||+++...++++|+||+.||.+||++|++.++
T Consensus 375 ~a~~~~---~~g~-~~~~~~~~~~~-~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 375 YAQPIY---EPGY-LDKIPPYDTPI-EGLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred cccccc---cCch-hhcCCCcccCc-CCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhc
Confidence 554433 3442 22334456677 8999999955443456999999999999999998875
No 17
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=100.00 E-value=2.6e-32 Score=310.07 Aligned_cols=409 Identities=19% Similarity=0.196 Sum_probs=245.4
Q ss_pred cEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHHHHHcCCCccc
Q 004458 164 SVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLSIPLHK 243 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L~~~LGl~~~~ 243 (752)
+|+|||||++||+||++|+++|++|+|+|+++++||+++|++..+ ++.+|.|+|++.+.+.+ +..++++||+....
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~---g~~~d~G~~~~~~~~~~-~~~l~~~lg~~~~~ 76 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDED---GDWYETGLHIFFGAYPN-MLQLLKELNIEDRL 76 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCC---CCEEEcCcceeccCCch-HHHHHHHcCCccce
Confidence 599999999999999999999999999999999999999986421 26899999999987765 67899999986443
Q ss_pred cc-CCCceecC---CCccc-------cccchHHHHHH-HHH---HHHHH---HHHHHH-hc-----CCCCCCCHHHHHHH
Q 004458 244 VR-DNCPLYKP---DGAPV-------NKEIDSKVEFI-FNK---LLDKV---MELRKI-KG-----GFANDVSLGSVLET 299 (752)
Q Consensus 244 ~~-~~~~~~~~---~G~~~-------~~~~~~~~~~~-~~~---ll~~~---~~~~~~-~~-----~~~~~~sl~e~l~~ 299 (752)
.. ....++.. ++... +.+........ +.. ..+.. ..+... .. ...+++|+.+|++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 156 (453)
T TIGR02731 77 QWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTWPEKIKFAIGLLPAIVRGQKYVEEQDKYTVTEWLRK 156 (453)
T ss_pred eecCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCHHHHHHHHHHhHHHHhcCccchhhhccCCHHHHHHH
Confidence 21 11122211 12111 11111101100 000 00111 011110 00 11367899999875
Q ss_pred HHHHHHhhCCHHHH-HHHHHHHHhhhhccCCCchhhhhhccccCCCccCCCC-ceecCCC-----HHHHHHHHHc-CCcE
Q 004458 300 LRQLYAVARSTEER-ELLDWHLANLEYANAGCLSDLSATYWDQDDPYEMGGD-HCFLAGG-----NWRLIKALCE-GVPI 371 (752)
Q Consensus 300 l~~~~~~~~s~~~~-~~l~~~~~~le~~~~~~l~~ls~~~~~~~~~~~~~g~-~~~~~gG-----~~~L~~aLa~-gl~I 371 (752)
. ..++... .++.+....+.......++......+.........+. .....|+ .+.+.+.|.+ |.+|
T Consensus 157 ~------~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i 230 (453)
T TIGR02731 157 Q------GVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPIVDYITSRGGEV 230 (453)
T ss_pred c------CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCChHHHHHHHHHHHHhcCCEE
Confidence 2 1233322 2333333222211111111111100000000000111 1122232 3445555533 7899
Q ss_pred EcCceEEEEEecCCc-EE-EEE-CCE-----EEEecEEEEcCChhhHhhccccCCCCCc-HHHHHHHHhcCCccEEEEEE
Q 004458 372 FYEKTVNTIKYGNEG-VE-VIA-GDQ-----MFQADMVLCTVPLGVLKEKTIKFEPELP-QRKVAAIDRLGFGLLNKVAM 442 (752)
Q Consensus 372 ~ln~~V~~I~~~~~g-v~-V~~-~g~-----~~~AD~VV~AvPl~vLk~~~i~f~P~Lp-~~k~~ai~~l~~g~~~kV~L 442 (752)
++|++|++|...+++ +. |.. +++ ++.||.||+|+|+..+.++ +.+.++ ....+.++.+.++++.++++
T Consensus 231 ~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~l---L~~~~~~~~~~~~~~~~~~~~~~~v~l 307 (453)
T TIGR02731 231 RLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLL---LPQPWKQMPFFQKLNGLEGVPVINVHI 307 (453)
T ss_pred eCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhh---CchhhhcCHHHHHhhcCCCCcEEEEEE
Confidence 999999999876554 42 433 444 7899999999999987653 111222 23556677788889999999
Q ss_pred EecCcccccCCCcceeeccCCCCCceEEEEe---eccccCCCcEEEEEeccchhhhhccCCHHHHHHHHHHHHHHhcCCC
Q 004458 443 VFPYVFWGEELDTFGCLNEQSSKRGEFFLFY---GYHTVSGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPK 519 (752)
Q Consensus 443 ~fd~~fW~~~~~~fg~l~~~~~~~~~~~~~~---~~~~~~g~~vL~~~~~g~~a~~~~~lsdeel~~~vl~~L~~if~~~ 519 (752)
.|++++|... +.+..........+.+. ....+++..++..++ +. +..+.+++++++++.++++|+++||..
T Consensus 308 ~~~~~~~~~~----~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~-~~-~~~~~~~~~ee~~~~v~~~L~~~~~~~ 381 (453)
T TIGR02731 308 WFDRKLTTVD----HLLFSRSPLLSVYADMSETCKEYADPDKSMLELVF-AP-AADWIGRSDEEIIDATMAELAKLFPNH 381 (453)
T ss_pred EEccccCCCC----ceeeeCCCcceeecchhhhChhhcCCCCeEEEEEe-cC-hhhhhcCCHHHHHHHHHHHHHHhCCcc
Confidence 9999987543 11222111111111110 011233344444333 32 356788999999999999999999852
Q ss_pred CCCCCCCeeEEEEecCCCCCCCCCCCCCcccCCCCchHHhhcccCCcEEEecccccCcCCcchHHHHHHHHHHHHHHH
Q 004458 520 GIDVPDPLQTICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVGSRLFFAGEATTRQYPATMHGAYLSGLREASRIL 597 (752)
Q Consensus 520 ~~~vp~p~~~~v~rW~~dp~~~Gsys~~~pg~~~~~~~~l~~pv~~~L~fAGe~ts~~~~g~veGAl~SG~rAA~~Il 597 (752)
.....+.+.+.++|..+||+. | ...||. ....+.+.+|+ +||||||++++..|+|+||||+.||.+||++|.
T Consensus 382 -~~~~~~~~~~~~~~~~~p~a~--~-~~~pg~-~~~~~~~~~p~-~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 382 -IKADSPAKILKYKVVKTPRSV--Y-KTTPGR-QQYRPHQKTPI-PNFFLAGDYTKQKYLASMEGAVLSGKLCAQAIV 453 (453)
T ss_pred -cCCCCCceEEEEEEEECCCce--e-ccCCCC-hhhCccccCcc-CCEEEeehhccCcccccHHHHHHHHHHHHHHhC
Confidence 111246677778999999984 4 345663 35567788888 899999999998899999999999999999873
No 18
>PLN02612 phytoene desaturase
Probab=100.00 E-value=1.8e-32 Score=317.73 Aligned_cols=415 Identities=19% Similarity=0.203 Sum_probs=247.9
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHHHHHcCC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLSI 239 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L~~~LGl 239 (752)
....+|+|||||++||+||++|++.|++|+|+|+++++||++.|++..+ ++.+|.|+|++.+.+.+ +..++++||+
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~---G~~~D~G~h~~~g~~~~-~~~ll~elG~ 166 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDED---GDWYETGLHIFFGAYPN-VQNLFGELGI 166 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCC---CCEEcCCceEEeCCCch-HHHHHHHhCC
Confidence 3467899999999999999999999999999999999999999987532 27899999999998765 7789999999
Q ss_pred Cccccc--CCCceecC--CCccc--c------ccchHHHHHHH-H---HHHHHHHHHHHH----h-----cCCCCCCCHH
Q 004458 240 PLHKVR--DNCPLYKP--DGAPV--N------KEIDSKVEFIF-N---KLLDKVMELRKI----K-----GGFANDVSLG 294 (752)
Q Consensus 240 ~~~~~~--~~~~~~~~--~G~~~--~------~~~~~~~~~~~-~---~ll~~~~~~~~~----~-----~~~~~~~sl~ 294 (752)
...... ....++.. .+... . .+......... + .+.+........ . ....+++|+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ls~~~kl~~~~~~~~~~~~~~~~~~~~d~~Sv~ 246 (567)
T PLN02612 167 NDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLTWPEKIKFAIGLLPAIVGGQAYVEAQDGLSVK 246 (567)
T ss_pred cccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCccCCHHHHHHHHHhhhHHhcccchhhhhcCcCcHH
Confidence 654221 11111111 12111 1 11000111000 0 011111110000 0 0123578999
Q ss_pred HHHHHHHHHHHhhCCHHHH-HHHHHHHHhhhhccCCCchhhhhh----ccccCCCccCCCCceecCCCH-HHHHHHHH--
Q 004458 295 SVLETLRQLYAVARSTEER-ELLDWHLANLEYANAGCLSDLSAT----YWDQDDPYEMGGDHCFLAGGN-WRLIKALC-- 366 (752)
Q Consensus 295 e~l~~l~~~~~~~~s~~~~-~~l~~~~~~le~~~~~~l~~ls~~----~~~~~~~~~~~g~~~~~~gG~-~~L~~aLa-- 366 (752)
+|++.. ..++... +++.+.+..+...+...++..... .+... ..+....++.|+. +.+++.|.
T Consensus 247 e~l~~~------~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~~---~~gs~~~~~~G~~~~~l~~~l~~~ 317 (567)
T PLN02612 247 EWMRKQ------GVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQE---KHGSKMAFLDGNPPERLCMPIVDH 317 (567)
T ss_pred HHHHhc------CCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHHhc---cCCceEeeecCCchHHHHHHHHHH
Confidence 998762 1222222 234333322222221111111110 01000 0011222334443 34444443
Q ss_pred --c-CCcEEcCceEEEEEecCCcE--EEEE-CCEEEEecEEEEcCChhhHhhccccCCCCCcHHHHHHHHhcCCccEEEE
Q 004458 367 --E-GVPIFYEKTVNTIKYGNEGV--EVIA-GDQMFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFGLLNKV 440 (752)
Q Consensus 367 --~-gl~I~ln~~V~~I~~~~~gv--~V~~-~g~~~~AD~VV~AvPl~vLk~~~i~f~P~Lp~~k~~ai~~l~~g~~~kV 440 (752)
+ |.+|++|++|++|..+++++ .|.. +|+++.||+||+|+|+.+++.+..... .+....+.++++.+.++.+|
T Consensus 318 l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~--~~~~~~~~l~~l~~~~v~~v 395 (567)
T PLN02612 318 FQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQW--KEIPYFKKLDKLVGVPVINV 395 (567)
T ss_pred HHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchh--cCcHHHHHHHhcCCCCeEEE
Confidence 3 78999999999999876663 2443 788999999999999999986322111 12234556677888899999
Q ss_pred EEEecCcccccCCCcceeeccCCCCCceEEEEeec------cccCCCcEEEEEeccchhhhhccCCHHHHHHHHHHHHHH
Q 004458 441 AMVFPYVFWGEELDTFGCLNEQSSKRGEFFLFYGY------HTVSGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRG 514 (752)
Q Consensus 441 ~L~fd~~fW~~~~~~fg~l~~~~~~~~~~~~~~~~------~~~~g~~vL~~~~~g~~a~~~~~lsdeel~~~vl~~L~~ 514 (752)
++.|+++||... + +.+....... ..+.+. +.+++..++...+ + .+..|.+++++++++.++++|++
T Consensus 396 ~l~~dr~~~~~~-~--~~~~~~~~~~---~~~~d~S~~~~~~~~~~~~ll~~~~-~-~a~~~~~~sdeei~e~vl~~L~~ 467 (567)
T PLN02612 396 HIWFDRKLKNTY-D--HLLFSRSPLL---SVYADMSTTCKEYYDPNKSMLELVF-A-PAEEWISRSDEDIIDATMKELAK 467 (567)
T ss_pred EEEECcccCCCC-C--ceeecCCCCc---eeehhhhhcchhhcCCCCeEEEEEE-E-cChhhhcCCHHHHHHHHHHHHHH
Confidence 999999998532 1 1222211111 111111 1123444444333 2 56789999999999999999999
Q ss_pred hcCCCCCCCCCC--eeEEEEecCCCCCCCCCCCCCcccCCCCchHHhhcccCCcEEEecccccCcCCcchHHHHHHHHHH
Q 004458 515 IYNPKGIDVPDP--LQTICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVGSRLFFAGEATTRQYPATMHGAYLSGLRE 592 (752)
Q Consensus 515 if~~~~~~vp~p--~~~~v~rW~~dp~~~Gsys~~~pg~~~~~~~~l~~pv~~~L~fAGe~ts~~~~g~veGAl~SG~rA 592 (752)
+||.. ..+++ .......+...|++. |.. .|+.. ...+...+|+ +|||||||||...|+++||||+.||.+|
T Consensus 468 lfp~~--~~~~~~~~~i~~~~~v~~P~a~--~~~-~pg~~-~~rp~~~tPi-~~l~lAGd~t~~~~~~smeGAv~SG~~A 540 (567)
T PLN02612 468 LFPDE--ISADQSKAKILKYHVVKTPRSV--YKT-VPNCE-PCRPLQRSPI-EGFYLAGDYTKQKYLASMEGAVLSGKLC 540 (567)
T ss_pred HCCcc--cccccCCceEEEEEEeccCCce--EEe-CCCCc-ccCccccCcc-CCEEEeecceeCCchhhHHHHHHHHHHH
Confidence 99853 11111 122223344455432 322 23321 2234467788 8999999999988999999999999999
Q ss_pred HHHHHHHhhccC
Q 004458 593 ASRILRATRVQK 604 (752)
Q Consensus 593 A~~Il~~l~~~~ 604 (752)
|++|++.++...
T Consensus 541 A~~I~~~~~~~~ 552 (567)
T PLN02612 541 AQSIVQDYELLA 552 (567)
T ss_pred HHHHHHHhcccc
Confidence 999999985533
No 19
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=100.00 E-value=2.6e-30 Score=289.68 Aligned_cols=386 Identities=21% Similarity=0.216 Sum_probs=242.4
Q ss_pred HHHHHHHhCCCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHHHHHcCCCcccc--cCCCceecC
Q 004458 176 AAAKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLSIPLHKV--RDNCPLYKP 253 (752)
Q Consensus 176 ~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L~~~LGl~~~~~--~~~~~~~~~ 253 (752)
+||++|+++|++|+|||+++++||+++|++.++. ++.+|.|+|++.+.+.+ +..++++||++.... .....++..
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~--~~~~d~G~~~~~~~~~~-~~~l~~~lgl~~~~~~~~~~~~~~~~ 77 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGL--GQTIDNGQHVLLGAYTN-LLALLRRIGAEPRLQGPRLPLPFYDP 77 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCC--CcceecCCEEEEcccHH-HHHHHHHhCCchhhhcccCCcceecC
Confidence 5899999999999999999999999999988742 25699999999987654 778999999976543 112223333
Q ss_pred CCcc-------ccccch--HHHH-------HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhhCCHHHHH-HH
Q 004458 254 DGAP-------VNKEID--SKVE-------FIFNKLLDKVMELRKIKGGFANDVSLGSVLETLRQLYAVARSTEERE-LL 316 (752)
Q Consensus 254 ~G~~-------~~~~~~--~~~~-------~~~~~ll~~~~~~~~~~~~~~~~~sl~e~l~~l~~~~~~~~s~~~~~-~l 316 (752)
++.. ++.+.. ..+. ....++......+........+++|+.+|++.. ..++...+ ++
T Consensus 78 ~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~------~~~~~~~~~~~ 151 (419)
T TIGR03467 78 GGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALRRTRFRALDDTTVGDWLQAA------GQSERLIERLW 151 (419)
T ss_pred CCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHc------CCCHHHHHHHH
Confidence 3331 111111 0000 000111111111111111234678999998752 12333222 33
Q ss_pred HHHHHhhhhccCCCchhhhhhccc----c-CCCccCCCCceecCCCHHHHHHH-HHc-----CCcEEcCceEEEEEecCC
Q 004458 317 DWHLANLEYANAGCLSDLSATYWD----Q-DDPYEMGGDHCFLAGGNWRLIKA-LCE-----GVPIFYEKTVNTIKYGNE 385 (752)
Q Consensus 317 ~~~~~~le~~~~~~l~~ls~~~~~----~-~~~~~~~g~~~~~~gG~~~L~~a-La~-----gl~I~ln~~V~~I~~~~~ 385 (752)
++.+..... .....++..... . ...........+++||+++++.. |++ |++|++|++|++|..+++
T Consensus 152 ~p~~~~~~~---~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~ 228 (419)
T TIGR03467 152 EPLLLSALN---TPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANAG 228 (419)
T ss_pred HHHHHHHcC---CCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcCC
Confidence 333322211 112222211100 0 00001122456788998876533 543 789999999999999988
Q ss_pred cEEEE--ECCEEEEecEEEEcCChhhHhhccccCCCCCcHHHHHHHHhcCCccEEEEEEEecCcccccCCCcceeeccCC
Q 004458 386 GVEVI--AGDQMFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFWGEELDTFGCLNEQS 463 (752)
Q Consensus 386 gv~V~--~~g~~~~AD~VV~AvPl~vLk~~~i~f~P~Lp~~k~~ai~~l~~g~~~kV~L~fd~~fW~~~~~~fg~l~~~~ 463 (752)
+|+++ .+|+++.||+||+|+|+.++.++ .|+ +.+.++++++.|++..++++.|+++||... +.++.+.. +
T Consensus 229 ~~~~~~~~~g~~~~~d~vi~a~p~~~~~~l----l~~--~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~-~~~~~~~~-~ 300 (419)
T TIGR03467 229 GIRALVLSGGETLPADAVVLAVPPRHAASL----LPG--EDLGALLTALGYSPITTVHLRLDRAVRLPA-PMVGLVGG-L 300 (419)
T ss_pred cceEEEecCCccccCCEEEEcCCHHHHHHh----CCC--chHHHHHhhcCCcceEEEEEEeCCCcCCCC-CeeeecCC-c
Confidence 86653 37788999999999999999863 222 146778999999999999999999998542 23443321 1
Q ss_pred CCCceEEEEeeccccCCCcEEEEEeccchhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCCCCeeEEEEecCCCCCCCCC
Q 004458 464 SKRGEFFLFYGYHTVSGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDPFTHGS 543 (752)
Q Consensus 464 ~~~~~~~~~~~~~~~~g~~vL~~~~~g~~a~~~~~lsdeel~~~vl~~L~~if~~~~~~vp~p~~~~v~rW~~dp~~~Gs 543 (752)
. .+.+.....++...++..++.+ +..+..++++++++.++++|+++||.. .-..|....+.+|....
T Consensus 301 ---~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~~l~~l~~~~~~~--~~~~~~~~~~~~~~~~~----- 367 (419)
T TIGR03467 301 ---A-QWLFDRGQLAGEPGYLAVVISA--ARDLVDLPREELADRIVAELRRAFPRV--AGAKPLWARVIKEKRAT----- 367 (419)
T ss_pred ---e-eEEEECCcCCCCCCEEEEEEec--chhhccCCHHHHHHHHHHHHHHhcCcc--ccCCccceEEEEccCCc-----
Confidence 1 1222222222222455555543 456788899999999999999999853 11245566677786533
Q ss_pred CCCCcccCCCCchHHhhcccCCcEEEecccccCcCCcchHHHHHHHHHHHHHHH
Q 004458 544 YSHVRVRSSGSDYDILAESVGSRLFFAGEATTRQYPATMHGAYLSGLREASRIL 597 (752)
Q Consensus 544 ys~~~pg~~~~~~~~l~~pv~~~L~fAGe~ts~~~~g~veGAl~SG~rAA~~Il 597 (752)
|++ .+|.. ...+.+.+|. ++||||||+++.+++++||||+.||.+||++|+
T Consensus 368 ~~~-~~g~~-~~~~~~~~~~-~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 368 FAA-TPGLN-RLRPGARTPW-PNLFLAGDWTATGWPATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred ccc-CCccc-ccCCCCCCCc-CCEEEecccccCCCcchHHHHHHHHHHHHHHHh
Confidence 322 24432 2334456777 899999999998888999999999999999986
No 20
>PRK07208 hypothetical protein; Provisional
Probab=99.98 E-value=1.4e-29 Score=289.56 Aligned_cols=412 Identities=16% Similarity=0.138 Sum_probs=251.7
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHHHHHcCC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLSI 239 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L~~~LGl 239 (752)
++.++|+|||||+|||+||++|+++|++|+|+|+++++||+++|...++ +.+|.|+|++...+. .+..++++++.
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g----~~~d~G~h~~~~~~~-~~~~l~~~l~~ 76 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKG----NRFDIGGHRFFSKSP-EVMDLWNEILP 76 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCC----ceEccCCceeccCCH-HHHHHHHHhcC
Confidence 3467999999999999999999999999999999999999999998765 789999999987654 57889999986
Q ss_pred Cccc-ccCCCceecCCCccccccch--HHHHH-HHHHHHHHHH-HHHHHhcCCCCCCCHHHHHHHHHHHHHhhCCHHHHH
Q 004458 240 PLHK-VRDNCPLYKPDGAPVNKEID--SKVEF-IFNKLLDKVM-ELRKIKGGFANDVSLGSVLETLRQLYAVARSTEERE 314 (752)
Q Consensus 240 ~~~~-~~~~~~~~~~~G~~~~~~~~--~~~~~-~~~~ll~~~~-~~~~~~~~~~~~~sl~e~l~~l~~~~~~~~s~~~~~ 314 (752)
.... .......++.+|+..+.+.. ..+.. .+...+.... .+........++.|+++|+... ........
T Consensus 77 ~~~~~~~~~~~~~~~~g~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~l~~~------~g~~~~~~ 150 (479)
T PRK07208 77 DDDFLLRPRLSRIYYRGKFFDYPLKAFDALKNLGLWRTAKCGASYLKARLRPRKEEDSFEDWVINR------FGRRLYST 150 (479)
T ss_pred CCccccccccceEEECCEEecCCcchhHHHHhCCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHh------hCHHHHHH
Confidence 3221 12222333346665444322 11100 0111111111 1111122224679999999752 11222233
Q ss_pred HHHHHHHhhhhccCCCchhh--------------hhhcccc---------CCCccCCCCceecCCCHHHHHHHHHc----
Q 004458 315 LLDWHLANLEYANAGCLSDL--------------SATYWDQ---------DDPYEMGGDHCFLAGGNWRLIKALCE---- 367 (752)
Q Consensus 315 ~l~~~~~~le~~~~~~l~~l--------------s~~~~~~---------~~~~~~~g~~~~~~gG~~~L~~aLa~---- 367 (752)
++.+....+.......++.. ....+.. ...........+++||++.|+++|++
T Consensus 151 ~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l~~ 230 (479)
T PRK07208 151 FFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAEKLEA 230 (479)
T ss_pred HHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHHHHHHH
Confidence 33333222111111111110 0000000 00000112355689999999999875
Q ss_pred -CCcEEcCceEEEEEecCCcEE--EEE---CC--EEEEecEEEEcCChhhHhhccccCCCCCcHHHHHHHHhcCCccEEE
Q 004458 368 -GVPIFYEKTVNTIKYGNEGVE--VIA---GD--QMFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFGLLNK 439 (752)
Q Consensus 368 -gl~I~ln~~V~~I~~~~~gv~--V~~---~g--~~~~AD~VV~AvPl~vLk~~~i~f~P~Lp~~k~~ai~~l~~g~~~k 439 (752)
|++|++|++|++|..+++++. ++. +| .++.||+||+|+|+..+... +.|++|+...++++.+.|.++.+
T Consensus 231 ~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~---l~~~~~~~~~~~~~~l~~~~~~~ 307 (479)
T PRK07208 231 LGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAA---LDPPPPPEVRAAAAGLRYRDFIT 307 (479)
T ss_pred cCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHh---cCCCCCHHHHHHHhCCCcceeEE
Confidence 678999999999999887643 332 34 36899999999999988752 34678888889999999999999
Q ss_pred EEEEecCcccccCCCcceeeccCCCCCceEE---EEeeccccCCCc-EEE-EEeccchhhhhccCCHHHHHHHHHHHHHH
Q 004458 440 VAMVFPYVFWGEELDTFGCLNEQSSKRGEFF---LFYGYHTVSGGP-VLN-ALVAGEAAKTFESMDPSFLLHRVLNVLRG 514 (752)
Q Consensus 440 V~L~fd~~fW~~~~~~fg~l~~~~~~~~~~~---~~~~~~~~~g~~-vL~-~~~~g~~a~~~~~lsdeel~~~vl~~L~~ 514 (752)
|++.|+++.+... .+.++.+.....+... .+.+...|++.. .+. .+..... ..+.+++++++++.++++|.+
T Consensus 308 v~l~~~~~~~~~~--~~~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~-~~~~~~~deel~~~~~~~L~~ 384 (479)
T PRK07208 308 VGLLVKELNLFPD--NWIYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEG-DDLWNMSDEDLIALAIQELAR 384 (479)
T ss_pred EEEEecCCCCCCC--ceEEecCCCCccceecccccCCcccCCCCCceEEEEEEEccCC-CccccCCHHHHHHHHHHHHHH
Confidence 9999998754322 2223322111111111 112222344442 222 2322222 235578999999999999999
Q ss_pred hcCCCCCCCCCCeeEEEEecCCCCCCCCCCCCCcccCCCC--chHHhhcccCCcEEEecccccCcCCcchHHHHHHHHHH
Q 004458 515 IYNPKGIDVPDPLQTICTRWGSDPFTHGSYSHVRVRSSGS--DYDILAESVGSRLFFAGEATTRQYPATMHGAYLSGLRE 592 (752)
Q Consensus 515 if~~~~~~vp~p~~~~v~rW~~dp~~~Gsys~~~pg~~~~--~~~~l~~pv~~~L~fAGe~ts~~~~g~veGAl~SG~rA 592 (752)
++ .. .-..|+.+.+.+|.. + |..+.++.... ....+.++. +|||+||++....| .+||+|+.||++|
T Consensus 385 l~-~~--~~~~~~~~~v~r~~~---a---~P~y~~~~~~~~~~~~~~~~~~-~~l~laGr~~~~~~-~~~d~a~~sg~~~ 453 (479)
T PRK07208 385 LG-LI--RPADVEDGFVVRVPK---A---YPVYDGTYERNVEIIRDLLDHF-PNLHLVGRNGMHRY-NNQDHSMLTAMLA 453 (479)
T ss_pred cC-CC--ChhheeEEEEEEecC---c---ccCCCchHHHHHHHHHHHHHhc-CCceeecccccccc-CChhHHHHHHHHH
Confidence 73 21 123566777777752 2 22223333211 111133555 89999999987644 7999999999999
Q ss_pred HHHHHHH
Q 004458 593 ASRILRA 599 (752)
Q Consensus 593 A~~Il~~ 599 (752)
|++|++.
T Consensus 454 a~~i~~~ 460 (479)
T PRK07208 454 VENIIAG 460 (479)
T ss_pred HHHHhcC
Confidence 9998876
No 21
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.97 E-value=5.6e-30 Score=282.81 Aligned_cols=401 Identities=20% Similarity=0.207 Sum_probs=274.7
Q ss_pred CcEEEECCChhHHHHHHHHHhCC--CeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHHHHHcCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFG--FKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLSIP 240 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g--~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L~~~LGl~ 240 (752)
++|+|||||+|||+|||+|++.+ ++|+|||+.+++||.++|+..+| +.+|.|++.+... ...+..++++||++
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G----~~~e~G~~~f~~~-~~~~l~li~eLGle 75 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDG----FLFERGPHHFLAR-KEEILDLIKELGLE 75 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCC----EEEeechhheecc-hHHHHHHHHHhCcH
Confidence 47999999999999999999999 99999999999999999998886 9999999998877 35678899999998
Q ss_pred ccccc--CCCceecCCCccccccchHHHHH---HH---HHHHHHHHHHHH-HhcCCCCCCCHHHHHHHHHHHHHhhCCHH
Q 004458 241 LHKVR--DNCPLYKPDGAPVNKEIDSKVEF---IF---NKLLDKVMELRK-IKGGFANDVSLGSVLETLRQLYAVARSTE 311 (752)
Q Consensus 241 ~~~~~--~~~~~~~~~G~~~~~~~~~~~~~---~~---~~ll~~~~~~~~-~~~~~~~~~sl~e~l~~l~~~~~~~~s~~ 311 (752)
..... ....+++.+|+.++.+....+.. .. .........+.. .......+.|+++|+.+- +....
T Consensus 76 d~l~~~~~~~~~i~~~gkl~p~P~~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~d~sv~~f~r~~------fG~ev 149 (444)
T COG1232 76 DKLLWNSTARKYIYYDGKLHPIPTPTILGIPLLLLSSEAGLARALQEFIRPKSWEPKQDISVGEFIRRR------FGEEV 149 (444)
T ss_pred HhhccCCcccceEeeCCcEEECCccceeecCCccccchhHHHHHHHhhhcccCCCCCCCcCHHHHHHHH------HhHHH
Confidence 77652 34456778888877665431110 00 000111111111 112346789999998752 11222
Q ss_pred HHHHHHHHHHhhhhccCCCchhhhhhccccC-------------------CC--ccCCCCceecCCCHHHHHHHHHcCC-
Q 004458 312 ERELLDWHLANLEYANAGCLSDLSATYWDQD-------------------DP--YEMGGDHCFLAGGNWRLIKALCEGV- 369 (752)
Q Consensus 312 ~~~~l~~~~~~le~~~~~~l~~ls~~~~~~~-------------------~~--~~~~g~~~~~~gG~~~L~~aLa~gl- 369 (752)
...++.+.+.... ++.++.+|+..|... .+ ....+....++||+++++++|++.+
T Consensus 150 ~~~~~~pll~giy---~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~l~ 226 (444)
T COG1232 150 VERFIEPLLEGIY---AGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEKLE 226 (444)
T ss_pred HHHHHHHHhhchh---cCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCccHHHHHHHHHHHhh
Confidence 2233444333332 222333333221100 00 0012345678999999999999965
Q ss_pred -cEEcCceEEEEEecCCcEEE-EECCEEEEecEEEEcCChhhHhhccccCCCCCcHHHHHHHHhcCCccEEEEEEEecCc
Q 004458 370 -PIFYEKTVNTIKYGNEGVEV-IAGDQMFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYV 447 (752)
Q Consensus 370 -~I~ln~~V~~I~~~~~gv~V-~~~g~~~~AD~VV~AvPl~vLk~~~i~f~P~Lp~~k~~ai~~l~~g~~~kV~L~fd~~ 447 (752)
.|+++++|++|..+..++.+ ..+|..++||.||+|+|+..+... .++ ....+.+.++.+.++..|.+.+++.
T Consensus 227 ~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~l----l~~--~~~~~~~~~~~~~s~~~vv~~~~~~ 300 (444)
T COG1232 227 AKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELARL----LGD--EAVSKAAKELQYTSVVTVVVGLDEK 300 (444)
T ss_pred hceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHHH----cCC--cchhhhhhhccccceEEEEEEeccc
Confidence 58999999999999777665 458888999999999999998753 223 2237788999999999999999876
Q ss_pred ccccCCCcceeeccCCCCCceEEEE----eeccccCCCcEEEEEeccchhhhhccCCHHHHHHHHHHHHHHhcCCCCCCC
Q 004458 448 FWGEELDTFGCLNEQSSKRGEFFLF----YGYHTVSGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPKGIDV 523 (752)
Q Consensus 448 fW~~~~~~fg~l~~~~~~~~~~~~~----~~~~~~~g~~vL~~~~~g~~a~~~~~lsdeel~~~vl~~L~~if~~~~~~v 523 (752)
--....+.+|.++.+......-+.| ++...|.|..++.+++.+..-.....++|||+++.++++|.++++-.
T Consensus 301 ~~~~~~~~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~---- 376 (444)
T COG1232 301 DNPALPDGYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKLGGIN---- 376 (444)
T ss_pred cccCCCCceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHHcCcC----
Confidence 2223456778887766542222233 33344557778888777666666677889999999999999999754
Q ss_pred CCCeeEEEEecCCCCCCCCCCCCCcccCCCCchHHhhcccC---CcEEEecccccCcCCcchHHHHHHHHHHHHHHH
Q 004458 524 PDPLQTICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVG---SRLFFAGEATTRQYPATMHGAYLSGLREASRIL 597 (752)
Q Consensus 524 p~p~~~~v~rW~~dp~~~Gsys~~~pg~~~~~~~~l~~pv~---~~L~fAGe~ts~~~~g~veGAl~SG~rAA~~Il 597 (752)
.+|..+.++||.. ++..+.+|+. .....+...+. ++|+.+|.+... -++.+++.+|..||++++
T Consensus 377 ~~~~~~~v~r~~~------~~PqY~vG~~-~~~~~ir~~l~~~y~gi~~~G~~~~g---~g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 377 GDPVFVEVTRWKY------AMPQYEVGHL-DRLEPIRAALKGAYPGIKSVGRYGEG---VGLPDCIAAGKEAAEQLL 443 (444)
T ss_pred cchhheeeeeccc------cCCccchhHH-HHHHHHHHhhccccCCeEEeccCCCC---CCchHHHHHHHHHHHHhh
Confidence 3566888889974 3333345542 12223333333 799999999873 368999999999999875
No 22
>PLN02487 zeta-carotene desaturase
Probab=99.97 E-value=9e-29 Score=284.11 Aligned_cols=414 Identities=17% Similarity=0.182 Sum_probs=256.2
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHHHHHcCC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLSI 239 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L~~~LGl 239 (752)
.++++|+|||||++||++|+.|++.|++|+|+|+++++||++.++...+ ++.+|.|.|++.+.+. .+..+++++|+
T Consensus 73 g~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~---g~~~e~G~h~~~~~~~-~~~~ll~~LGl 148 (569)
T PLN02487 73 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKN---GNHIEMGLHVFFGCYN-NLFRLMKKVGA 148 (569)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecC---CcEEecceeEecCCcH-HHHHHHHhcCC
Confidence 3456999999999999999999999999999999999999999996432 2789999999998875 47789999999
Q ss_pred Cccccc-CCCc-eecCCCcccc----ccchHHHHHHHHHH-----HHHHHHHHH------------Hhc--------CCC
Q 004458 240 PLHKVR-DNCP-LYKPDGAPVN----KEIDSKVEFIFNKL-----LDKVMELRK------------IKG--------GFA 288 (752)
Q Consensus 240 ~~~~~~-~~~~-~~~~~G~~~~----~~~~~~~~~~~~~l-----l~~~~~~~~------------~~~--------~~~ 288 (752)
...... .... ++..+|.... .+....+. .+..+ +....+++. ... ...
T Consensus 149 ~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~pl~-~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al~~~~~~~~~~~~~ 227 (569)
T PLN02487 149 DENLLVKDHTHTFVNKGGDVGELDFRFPVGAPLH-GIKAFLTTNQLEPYDKARNALALATSPVVRALVDPDGAMRDIRDL 227 (569)
T ss_pred cccccccccceeEEecCCEEeeeccCCCCCchhh-hHHHHHcCCCCCHHHHHhhcccccccchhhhccCccccccccccc
Confidence 755332 2222 2233443311 11111110 01111 011111111 000 123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCH-HHHHHHHHHHHhhhhccCCCchhhhhhccccC-CCccCCCCceecCCCHHH-HHHHH
Q 004458 289 NDVSLGSVLETLRQLYAVARST-EERELLDWHLANLEYANAGCLSDLSATYWDQD-DPYEMGGDHCFLAGGNWR-LIKAL 365 (752)
Q Consensus 289 ~~~sl~e~l~~l~~~~~~~~s~-~~~~~l~~~~~~le~~~~~~l~~ls~~~~~~~-~~~~~~g~~~~~~gG~~~-L~~aL 365 (752)
+++|+.+|+.+. ..++ ....++++.+..........++.......... ......+...+++||++. |++.+
T Consensus 228 d~~sv~~~l~r~------~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~l~~pl 301 (569)
T PLN02487 228 DDISFSDWFTSH------GGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVRLSGPI 301 (569)
T ss_pred cCCcHHHHHHHh------CCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCCchHHHHHHH
Confidence 568999998762 2233 34455555544333222222221100000000 000112345678999995 77776
Q ss_pred Hc-----CCcEEcCceEEEEEecC--Cc---E-EEEE----CCEEEEecEEEEcCChhhHhhccccCCCCCcH--HHHHH
Q 004458 366 CE-----GVPIFYEKTVNTIKYGN--EG---V-EVIA----GDQMFQADMVLCTVPLGVLKEKTIKFEPELPQ--RKVAA 428 (752)
Q Consensus 366 a~-----gl~I~ln~~V~~I~~~~--~g---v-~V~~----~g~~~~AD~VV~AvPl~vLk~~~i~f~P~Lp~--~k~~a 428 (752)
++ |++|+++++|++|..++ ++ + .|+. +++++.||+||+|+|+..++++ .|+.+. ...+.
T Consensus 302 ~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~L----lp~~~~~~~~~~~ 377 (569)
T PLN02487 302 AKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRL----LPEQWREYEFFDN 377 (569)
T ss_pred HHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHh----CCchhhccHHHhH
Confidence 54 88999999999999873 33 2 2333 3457899999999999988763 243322 23677
Q ss_pred HHhcCCccEEEEEEEecCcccccCC--------Ccceeec--cCCCCCceEEEEee--------ccccCCCcEEEEEecc
Q 004458 429 IDRLGFGLLNKVAMVFPYVFWGEEL--------DTFGCLN--EQSSKRGEFFLFYG--------YHTVSGGPVLNALVAG 490 (752)
Q Consensus 429 i~~l~~g~~~kV~L~fd~~fW~~~~--------~~fg~l~--~~~~~~~~~~~~~~--------~~~~~g~~vL~~~~~g 490 (752)
+..+.+.++..|+|.||++.-.... ...|... .... ..|..+.+ +.....+..|..++..
T Consensus 378 l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~--~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~ 455 (569)
T PLN02487 378 IYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSAD--ADFSCFADLALTSPEDYYKEGEGSLIQAVLTP 455 (569)
T ss_pred HhcCCCeeEEEEEEEecccccccccccccccccccccccccccccC--CCcceEeeeecCCHHHHcccCCceEEEEEEcC
Confidence 8888889999999999976422210 0111100 0001 11111111 1112234567777763
Q ss_pred chhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCCCCeeEEEEecCCCCCCCCCCCCCcccCCCCchHHhhcccCCcEEEe
Q 004458 491 EAAKTFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVGSRLFFA 570 (752)
Q Consensus 491 ~~a~~~~~lsdeel~~~vl~~L~~if~~~~~~vp~p~~~~v~rW~~dp~~~Gsys~~~pg~~~~~~~~l~~pv~~~L~fA 570 (752)
+..+..+++++++++++++|+++||... . ..+....+.+..+.-|.. .||.. ..++...+|+ +|||+|
T Consensus 456 --a~~~~~~~~~ei~~~~~~~L~~~~p~~~-~-~~v~~~~vv~~~~at~~~------~pg~~-~~RP~~~T~~-~nl~LA 523 (569)
T PLN02487 456 --GDPYMPLSNDKIVEKVHKQVLELFPSSR-G-LEVTWSSVVKIGQSLYRE------APGMD-PFRPDQKTPI-SNFFLA 523 (569)
T ss_pred --CccccCCCHHHHHHHHHHHHHHhCcccc-c-CceEEEEEEEccCceecc------CCCcc-ccCCCCCCCC-CCEEEe
Confidence 3567889999999999999999997531 1 134555566666544432 33321 2225557788 899999
Q ss_pred cccccCcCCcchHHHHHHHHHHHHHHHHHhhc
Q 004458 571 GEATTRQYPATMHGAYLSGLREASRILRATRV 602 (752)
Q Consensus 571 Ge~ts~~~~g~veGAl~SG~rAA~~Il~~l~~ 602 (752)
||||..+||++||||+.||.+||+.|++....
T Consensus 524 GD~t~~~yPat~EgAv~SG~~AA~~i~~~~~~ 555 (569)
T PLN02487 524 GSYTKQDYIDSMEGATLSGRQAAAYICEAGEE 555 (569)
T ss_pred CcccccCCcchHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999887643
No 23
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.97 E-value=7.3e-29 Score=282.32 Aligned_cols=404 Identities=19% Similarity=0.196 Sum_probs=241.4
Q ss_pred cEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHHHHHcCCCccc
Q 004458 164 SVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLSIPLHK 243 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L~~~LGl~~~~ 243 (752)
+|+|||||++||+||++|++.|++|+|+|+++++||+++|+.... ++.+|.|.|++.+.+. .+..+++++|+....
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~---g~~~d~G~~~~~~~~~-~~~~~~~~lg~~~~~ 76 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGD---GNHIEMGLHVFFGCYA-NLFRLMKKVGAEDNL 76 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCC---CceEeeceEEecCchH-HHHHHHHHcCCcccc
Confidence 589999999999999999999999999999999999999985332 2789999999998775 478899999987543
Q ss_pred ccCC-Ccee-cCCCccc--------cccchHHHHHHHH----HHHHHHHHHH-----HHh---c---------CCCCCCC
Q 004458 244 VRDN-CPLY-KPDGAPV--------NKEIDSKVEFIFN----KLLDKVMELR-----KIK---G---------GFANDVS 292 (752)
Q Consensus 244 ~~~~-~~~~-~~~G~~~--------~~~~~~~~~~~~~----~ll~~~~~~~-----~~~---~---------~~~~~~s 292 (752)
.... ...+ ..+++.. +.+..... ..+. .+.++..... ... . ...+++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~l~~~~ls~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 155 (474)
T TIGR02732 77 LLKEHTHTFVNKGGDIGELDFRFATGAPFNGLK-AFFTTSQLKWVDKLRNALALGTSPIVRGLVDYDGAMKTIRDLDKIS 155 (474)
T ss_pred ccccceeEEEcCCCcccccccCCCCCCchhhhH-HHhcCCCCCHHHHHHHHHHhhhhHHHhhccccchhhhhhhhhcccc
Confidence 2221 1212 2233321 11111000 0000 0111110000 000 0 0125688
Q ss_pred HHHHHHHHHHHHHhhCCHH-HHHHHHHHHHhhhhccCCCchhhhh----hccccCCCccCCCCceecCCCHH-----HHH
Q 004458 293 LGSVLETLRQLYAVARSTE-ERELLDWHLANLEYANAGCLSDLSA----TYWDQDDPYEMGGDHCFLAGGNW-----RLI 362 (752)
Q Consensus 293 l~e~l~~l~~~~~~~~s~~-~~~~l~~~~~~le~~~~~~l~~ls~----~~~~~~~~~~~~g~~~~~~gG~~-----~L~ 362 (752)
+.+|+++. ..++. ...++++.+......+...++.... ..... ...+.....++||.+ .++
T Consensus 156 ~~~~l~~~------~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~---~~~~s~~~~~~g~~~~~l~~pl~ 226 (474)
T TIGR02732 156 FAEWFLSH------GGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAA---KTEASKLRMLKGSPDKYLTKPIL 226 (474)
T ss_pred HHHHHHHc------CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh---CCCcceeeeecCCcchhHHHHHH
Confidence 99988762 23433 4555665554443333222221111 00000 111223344556543 466
Q ss_pred HHHHc-CCcEEcCceEEEEEecC--Cc---EE-EEE-CC---EEEEecEEEEcCChhhHhhccccCCCCCc--HHHHHHH
Q 004458 363 KALCE-GVPIFYEKTVNTIKYGN--EG---VE-VIA-GD---QMFQADMVLCTVPLGVLKEKTIKFEPELP--QRKVAAI 429 (752)
Q Consensus 363 ~aLa~-gl~I~ln~~V~~I~~~~--~g---v~-V~~-~g---~~~~AD~VV~AvPl~vLk~~~i~f~P~Lp--~~k~~ai 429 (752)
+.|.+ |.+|+++++|++|..++ ++ ++ |.. +| +++.||+||+|+|+..+.++. |+++ ....+.+
T Consensus 227 ~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll----~~~~~~~~~~~~l 302 (474)
T TIGR02732 227 EYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLL----PQEWRQFEEFDNI 302 (474)
T ss_pred HHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhC----ChhhhcCHHHhhH
Confidence 77766 78999999999998864 23 22 223 33 568999999999999987632 3322 1356788
Q ss_pred HhcCCccEEEEEEEecCcccccCC-C------cceeeccCCCCCceEEEE-ee-------ccccCCC-cEEEEEeccchh
Q 004458 430 DRLGFGLLNKVAMVFPYVFWGEEL-D------TFGCLNEQSSKRGEFFLF-YG-------YHTVSGG-PVLNALVAGEAA 493 (752)
Q Consensus 430 ~~l~~g~~~kV~L~fd~~fW~~~~-~------~fg~l~~~~~~~~~~~~~-~~-------~~~~~g~-~vL~~~~~g~~a 493 (752)
..+.+.++..|+|.|+++.-.... . ....+..-.......+.| .+ ...+.+. .++.+++.. +
T Consensus 303 ~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~ 380 (474)
T TIGR02732 303 YKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTP--G 380 (474)
T ss_pred hcCCCCCeEEEEEEeccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEeC--h
Confidence 899999999999999875422110 0 000010000000001111 11 0112233 345555543 3
Q ss_pred hhhccCCHHHHHHHHHHHHHHhcCCCCCCCCCCeeEEEEecCCCCCCCCCCCCCcccCCCCchHHhhcccCCcEEEeccc
Q 004458 494 KTFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVGSRLFFAGEA 573 (752)
Q Consensus 494 ~~~~~lsdeel~~~vl~~L~~if~~~~~~vp~p~~~~v~rW~~dp~~~Gsys~~~pg~~~~~~~~l~~pv~~~L~fAGe~ 573 (752)
..+..+++++++++++++|+++||.. .-..+.+..+.+..+.-|. ..||.. ...+...+|+ +|||+||||
T Consensus 381 ~~~~~~~~~~l~~~~~~~L~~~~p~~--~~~~~~~~~v~~~~~a~~~------~~pg~~-~~~P~~~t~~-~~l~lAGD~ 450 (474)
T TIGR02732 381 DPWMPESNEEIAKRVDKQVRALFPSS--KNLKLTWSSVVKLAQSLYR------EAPGMD-PFRPDQKTPI-SNFFLAGSY 450 (474)
T ss_pred hhhcCCCHHHHHHHHHHHHHHhCccc--cCCceeEEEEEEecCceec------cCCCCc-ccCCCCCCCC-CCeEEeccc
Confidence 46778999999999999999999842 1124555555565554332 234432 2234456677 899999999
Q ss_pred ccCcCCcchHHHHHHHHHHHHHHH
Q 004458 574 TTRQYPATMHGAYLSGLREASRIL 597 (752)
Q Consensus 574 ts~~~~g~veGAl~SG~rAA~~Il 597 (752)
|...||++||||+.||.+||+.|+
T Consensus 451 t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 451 TQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred cccCchHHHhHHHHHHHHHHHHhC
Confidence 999999999999999999999874
No 24
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.96 E-value=3.3e-26 Score=262.70 Aligned_cols=413 Identities=20% Similarity=0.233 Sum_probs=235.1
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCC-ccHHHHHHHHcCCCc
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIH-ANPLGVLARQLSIPL 241 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~-~n~l~~L~~~LGl~~ 241 (752)
.||||||||++||+||..|+++|++|+|||+++++||+++|++.+| +.+|.|++++.+.. ..++..+++++|++.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G----~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~ 77 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRG----FTFDVGATQVAGLEPGGIHARIFRELGIPL 77 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCC----EEEeecceEEEecCcCCHHHHHHHHcCCCC
Confidence 5899999999999999999999999999999999999999999875 89999999998753 345778899999874
Q ss_pred cc---ccCCCceecCCC-ccccccchH--H---HHHHH---HHHHHHHHHHHHH----hcC--CCC--------------
Q 004458 242 HK---VRDNCPLYKPDG-APVNKEIDS--K---VEFIF---NKLLDKVMELRKI----KGG--FAN-------------- 289 (752)
Q Consensus 242 ~~---~~~~~~~~~~~G-~~~~~~~~~--~---~~~~~---~~ll~~~~~~~~~----~~~--~~~-------------- 289 (752)
.. .+....++..+| ..+....+. . +...+ .+++....+..+. ... ...
T Consensus 78 ~~~~~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (492)
T TIGR02733 78 PEAKILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSAL 157 (492)
T ss_pred cccccCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhc
Confidence 42 223344555666 333322221 0 11111 0111111111110 000 000
Q ss_pred -----------CCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhhccCCCchhhhhhccccCCCccCCCCceecCCCH
Q 004458 290 -----------DVSLGSVLETLRQLYAVARSTEERELLDWHLANLEYANAGCLSDLSATYWDQDDPYEMGGDHCFLAGGN 358 (752)
Q Consensus 290 -----------~~sl~e~l~~l~~~~~~~~s~~~~~~l~~~~~~le~~~~~~l~~ls~~~~~~~~~~~~~g~~~~~~gG~ 358 (752)
..|+.++++. +....++..+.++.+...............+........ .....+.++++||+
T Consensus 158 ~~~~~~~~~~~~~s~~~~l~~----~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~G~~~~~GG~ 231 (492)
T TIGR02733 158 RPDTLLTGPLSLLTVADLLRL----CGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQM--AQAPHGLWHLHGSM 231 (492)
T ss_pred ChhhhhhhhhhhhhHHHHHHH----hCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhc--cccCCCceeecCcH
Confidence 1122222211 001234455555544322111010001111110000000 11122346799999
Q ss_pred HHHHHHHHc-----CCcEEcCceEEEEEecCCcEE-E-EECC-----EEEEecEEEEcCChhhHhhccccCCCCCcHHHH
Q 004458 359 WRLIKALCE-----GVPIFYEKTVNTIKYGNEGVE-V-IAGD-----QMFQADMVLCTVPLGVLKEKTIKFEPELPQRKV 426 (752)
Q Consensus 359 ~~L~~aLa~-----gl~I~ln~~V~~I~~~~~gv~-V-~~~g-----~~~~AD~VV~AvPl~vLk~~~i~f~P~Lp~~k~ 426 (752)
++|+++|++ |.+|++|++|++|..+++++. | ..++ +++.||+||+|+|+..+.++ + ..|.+|+...
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~l-l-~~~~~~~~~~ 309 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLEL-L-GPLGLPPGYR 309 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHh-c-CcccCCHHHH
Confidence 999999976 678999999999998877532 2 2343 67999999999999988752 2 3367888788
Q ss_pred HHHHhcCCcc-EEEEEEEecCcccccCC-CcceeeccCCCCCceEEEEe----eccccCCCcEEEEEeccchhhhhccC-
Q 004458 427 AAIDRLGFGL-LNKVAMVFPYVFWGEEL-DTFGCLNEQSSKRGEFFLFY----GYHTVSGGPVLNALVAGEAAKTFESM- 499 (752)
Q Consensus 427 ~ai~~l~~g~-~~kV~L~fd~~fW~~~~-~~fg~l~~~~~~~~~~~~~~----~~~~~~g~~vL~~~~~g~~a~~~~~l- 499 (752)
+.++++.+.+ ..++++.+++..-+.+. ..+..+.+. .+.+++.. +..+|+|..+++.++..+. ..|..+
T Consensus 310 ~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~d~~~aP~G~~~l~~~~~~~~-~~~~~~~ 385 (492)
T TIGR02733 310 KRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDH---QGSLFVSISQEGDGRAPQGEATLIASSFTDT-NDWSSLD 385 (492)
T ss_pred HHHhcCCCCCceEEEEEeecccccCCCCCcceeeccCC---CceEEEEeCCccccCCCCCceEEEEEcCCCH-HHHcCCC
Confidence 8888888875 55899999874211111 122222221 12333322 1235567767654443322 123221
Q ss_pred ------CHHHHHHHHHHHHHHhcCCCCCCCCCCeeEEEE----ecCCCC-CCCCCCCCCc--ccCCCCchHHhhcccCCc
Q 004458 500 ------DPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICT----RWGSDP-FTHGSYSHVR--VRSSGSDYDILAESVGSR 566 (752)
Q Consensus 500 ------sdeel~~~vl~~L~~if~~~~~~vp~p~~~~v~----rW~~dp-~~~Gsys~~~--pg~~~~~~~~l~~pv~~~ 566 (752)
-.+++.+++++.|++.+|.. .+-+..... .|.+.- ...|+...+. +.+.......-.+|+ +|
T Consensus 386 ~~~y~~~k~~~~~~il~~le~~~p~l----~~~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i-~g 460 (492)
T TIGR02733 386 EEDYTAKKKQYTQTIIERLGHYFDLL----EENWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPV-KG 460 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCc----cccEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCC-CC
Confidence 14557888999999988642 111111110 122111 1123322111 122111111124677 89
Q ss_pred EEEecccccCcCCcchHHHHHHHHHHHHHHHH
Q 004458 567 LFFAGEATTRQYPATMHGAYLSGLREASRILR 598 (752)
Q Consensus 567 L~fAGe~ts~~~~g~veGAl~SG~rAA~~Il~ 598 (752)
|||||+++.+ ++.+.|++.||+.||+.|+.
T Consensus 461 Lyl~G~~~~p--G~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 461 LWLCGDSIHP--GEGTAGVSYSALMVVRQILA 490 (492)
T ss_pred eEEecCccCC--CCcHHHHHHHHHHHHHHHhh
Confidence 9999999964 35899999999999999985
No 25
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.96 E-value=1.1e-26 Score=267.46 Aligned_cols=409 Identities=19% Similarity=0.144 Sum_probs=233.0
Q ss_pred EEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHHHHHcCCCc---
Q 004458 165 VIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLSIPL--- 241 (752)
Q Consensus 165 v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L~~~LGl~~--- 241 (752)
|||||||++||+||..|+++|++|+|||+++++||+++|++.+| +.+|.|++++... +.+..+++++|+++
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G----~~fD~G~~~~~~~--~~~~~l~~~lg~~l~~~ 74 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDG----FRFDTGPTVITMP--EALEELFALAGRDLADY 74 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCC----eEEecCCeEEccc--cHHHHHHHHcCCChhhe
Confidence 79999999999999999999999999999999999999999875 8999999999753 56788889998643
Q ss_pred ---ccccCCCceecCCCccccccchHH-----H-------HHHHHHHHHHHHHHHHH-----hcC-C-------------
Q 004458 242 ---HKVRDNCPLYKPDGAPVNKEIDSK-----V-------EFIFNKLLDKVMELRKI-----KGG-F------------- 287 (752)
Q Consensus 242 ---~~~~~~~~~~~~~G~~~~~~~~~~-----~-------~~~~~~ll~~~~~~~~~-----~~~-~------------- 287 (752)
........+++.+|+.+....+.. + ...+.++++....+.+. +.. +
T Consensus 75 l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (502)
T TIGR02734 75 VELVPLDPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQ 154 (502)
T ss_pred EEEEECCCceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHh
Confidence 222233345556676554433211 1 11223333333322210 000 0
Q ss_pred ----CCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhhccCCCchhhhhhccccCCCccCCCCceecCCCHHHHHH
Q 004458 288 ----ANDVSLGSVLETLRQLYAVARSTEERELLDWHLANLEYANAGCLSDLSATYWDQDDPYEMGGDHCFLAGGNWRLIK 363 (752)
Q Consensus 288 ----~~~~sl~e~l~~l~~~~~~~~s~~~~~~l~~~~~~le~~~~~~l~~ls~~~~~~~~~~~~~g~~~~~~gG~~~L~~ 363 (752)
....|+.++++. ...++..+.++.+....+...............+ ....++.+++.||++.+++
T Consensus 155 ~~~~~~~~s~~~~~~~------~~~~~~l~~~l~~~~~~~g~~p~~~~~~~~l~~~-----~~~~~g~~~~~gG~~~l~~ 223 (502)
T TIGR02734 155 LLALLAWRSLYSKVAR------FFSDERLRQAFSFHALFLGGNPFRTPSIYALISA-----LEREWGVWFPRGGTGALVA 223 (502)
T ss_pred hhhccCcCCHHHHHHh------hcCCHHHHHHhcccceeeccCcccchHHHHHHHH-----HHhhceEEEcCCCHHHHHH
Confidence 012223332222 1223333333332111111011010111111111 1123445678999999999
Q ss_pred HHHc-----CCcEEcCceEEEEEecCCc-EEEEE-CCEEEEecEEEEcCChhhHhhccccCCCCC-cHHHHHHHHhcCCc
Q 004458 364 ALCE-----GVPIFYEKTVNTIKYGNEG-VEVIA-GDQMFQADMVLCTVPLGVLKEKTIKFEPEL-PQRKVAAIDRLGFG 435 (752)
Q Consensus 364 aLa~-----gl~I~ln~~V~~I~~~~~g-v~V~~-~g~~~~AD~VV~AvPl~vLk~~~i~f~P~L-p~~k~~ai~~l~~g 435 (752)
+|.+ |++|+++++|++|..++++ +.|.+ +|+++.||.||+|+++..+....+ .+.. |....+.++++.++
T Consensus 224 al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~s 301 (502)
T TIGR02734 224 AMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLL--PNHPRRRYPAARLSRKRPS 301 (502)
T ss_pred HHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhc--CccccccccccccccCCcC
Confidence 9876 7899999999999988766 45655 677899999999999866653222 2222 33334556666654
Q ss_pred -cEEEEEEEec---CcccccCCCcceeeccCC-------------CCCceEEEEe-e----ccccCCCcEEEEEeccchh
Q 004458 436 -LLNKVAMVFP---YVFWGEELDTFGCLNEQS-------------SKRGEFFLFY-G----YHTVSGGPVLNALVAGEAA 493 (752)
Q Consensus 436 -~~~kV~L~fd---~~fW~~~~~~fg~l~~~~-------------~~~~~~~~~~-~----~~~~~g~~vL~~~~~g~~a 493 (752)
+..++++.++ +.+ +.......++.++. .....+++.. + ..+|+|..++..++..+..
T Consensus 302 ~s~~~~~lgl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~ 380 (502)
T TIGR02734 302 PSLFVLYFGLLGVDGHW-PQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHL 380 (502)
T ss_pred CeeeEEEEeeccccCcC-CCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCC
Confidence 5778899988 443 32111111111110 0112233322 1 2356676666555432211
Q ss_pred ----hhhccCCHHHHHHHHHHHHHHh-cCCCCCCCCCCeeEEEEecCCCCC--------CCCCCCCCc--ccCCCCchHH
Q 004458 494 ----KTFESMDPSFLLHRVLNVLRGI-YNPKGIDVPDPLQTICTRWGSDPF--------THGSYSHVR--VRSSGSDYDI 558 (752)
Q Consensus 494 ----~~~~~lsdeel~~~vl~~L~~i-f~~~~~~vp~p~~~~v~rW~~dp~--------~~Gsys~~~--pg~~~~~~~~ 558 (752)
..|.. ..+++.+++++.|++. +|.. .+.++......|. ..|+...+. ..+.....+.
T Consensus 381 ~~~~~~~~~-~k~~~~~~il~~l~~~~~p~l-------~~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~ 452 (502)
T TIGR02734 381 GTADVDWSV-EGPRYRDRILAYLEERAIPGL-------RDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPH 452 (502)
T ss_pred CCCCCCcHH-HHHHHHHHHHHHHHHhcCCCh-------hHheEEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCC
Confidence 12332 2566888999999987 7532 2222222111111 123322111 1111111121
Q ss_pred -hhcccCCcEEEecccccCcCCcchHHHHHHHHHHHHHHHHHhhccC
Q 004458 559 -LAESVGSRLFFAGEATTRQYPATMHGAYLSGLREASRILRATRVQK 604 (752)
Q Consensus 559 -l~~pv~~~L~fAGe~ts~~~~g~veGAl~SG~rAA~~Il~~l~~~~ 604 (752)
..+|+ +||||||+++.+ ++.+.||+.||+.||+.|+++.+...
T Consensus 453 ~~~t~i-~gLyl~G~~~~p--G~Gv~g~~~sg~~~a~~il~~~~~~~ 496 (502)
T TIGR02734 453 NRDRKI-DNLYLVGAGTHP--GAGVPGVLGSAKATAKLMLGDLAPGP 496 (502)
T ss_pred CCCCCC-CCEEEeCCCCCC--CCCHHHHHHHHHHHHHHHHhhccCCC
Confidence 24567 899999999964 35899999999999999999876543
No 26
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.95 E-value=2.6e-24 Score=246.90 Aligned_cols=421 Identities=16% Similarity=0.169 Sum_probs=232.0
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCC----CccHHHHHHHHcC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGI----HANPLGVLARQLS 238 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~----~~n~l~~L~~~LG 238 (752)
+||||||||++||+||..|+++|++|+|||+++.+||++++++.+| +.+|.|++++.+. ..+.+..++..+|
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G----~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~ 76 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREG----YRFDVGASMIFGFGDKGTTNLLTRALAAVG 76 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCC----EEEEecchhheecCCcccccHHHHHHHHcC
Confidence 4899999999999999999999999999999999999999998875 8999999998754 3345666677777
Q ss_pred CCcccccCC--CceecCCCccccccchHH-----H-------HHHHHHHHHHHHHHHHHhcCC--CCCCCHHHHHH----
Q 004458 239 IPLHKVRDN--CPLYKPDGAPVNKEIDSK-----V-------EFIFNKLLDKVMELRKIKGGF--ANDVSLGSVLE---- 298 (752)
Q Consensus 239 l~~~~~~~~--~~~~~~~G~~~~~~~~~~-----~-------~~~~~~ll~~~~~~~~~~~~~--~~~~sl~e~l~---- 298 (752)
......... ..+..++|..+....+.. + ...+.++++............ ..-.....+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (493)
T TIGR02730 77 RKLETIPDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFK 156 (493)
T ss_pred CcccccCCCccEEEECCCCeeEeeecCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhh
Confidence 554432222 233445564443322211 0 112333333332222211100 00000000000
Q ss_pred --------------HHHHH-HHhhCCHHHHHHHHHHHHhhhhccCCCch-hhhhhccccCCCccCCCCceecCCCHHHHH
Q 004458 299 --------------TLRQL-YAVARSTEERELLDWHLANLEYANAGCLS-DLSATYWDQDDPYEMGGDHCFLAGGNWRLI 362 (752)
Q Consensus 299 --------------~l~~~-~~~~~s~~~~~~l~~~~~~le~~~~~~l~-~ls~~~~~~~~~~~~~g~~~~~~gG~~~L~ 362 (752)
.+... .....++..+.++..........+..... ........ . ...++.+++.||++.++
T Consensus 157 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~--~--~~~~g~~~~~gG~~~l~ 232 (493)
T TIGR02730 157 HPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPMINAGMVFS--D--RHYGGINYPKGGVGQIA 232 (493)
T ss_pred chhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchhhhHHHhhc--c--cccceEecCCChHHHHH
Confidence 00000 01234455555554332222111111110 01111110 0 12345577999999999
Q ss_pred HHHHc-----CCcEEcCceEEEEEecCCcEE-EEE-CCEEEEecEEEEcCChhhHhhccccCCCCCcHHHHHHHHhcCCc
Q 004458 363 KALCE-----GVPIFYEKTVNTIKYGNEGVE-VIA-GDQMFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFG 435 (752)
Q Consensus 363 ~aLa~-----gl~I~ln~~V~~I~~~~~gv~-V~~-~g~~~~AD~VV~AvPl~vLk~~~i~f~P~Lp~~k~~ai~~l~~g 435 (752)
++|.+ |++|+++++|++|..+++++. |.+ +|++++||.||+|+.+..+....+. ...+|+.....++++.++
T Consensus 233 ~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~s 311 (493)
T TIGR02730 233 ESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLK-AENLPKKEKNWQRNYVKS 311 (493)
T ss_pred HHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCC-ccccchhhHHHHhhccCC
Confidence 98876 789999999999998776543 544 7778999999999865443321221 122444444555666655
Q ss_pred -cEEEEEEEecCcccccCCCcceeeccC----CCCCceEEEEe-----eccccCCCcEEEEEeccchhhhhccC------
Q 004458 436 -LLNKVAMVFPYVFWGEELDTFGCLNEQ----SSKRGEFFLFY-----GYHTVSGGPVLNALVAGEAAKTFESM------ 499 (752)
Q Consensus 436 -~~~kV~L~fd~~fW~~~~~~fg~l~~~----~~~~~~~~~~~-----~~~~~~g~~vL~~~~~g~~a~~~~~l------ 499 (752)
+..++++.++...-+.....+..+.++ ....+.+++.. +..+|+|..++..++.-. ...|.++
T Consensus 312 ~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~-~~~w~~~~~~~y~ 390 (493)
T TIGR02730 312 PSFLSLHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSS-MEDWQGLSPKDYE 390 (493)
T ss_pred CceEEEEEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCC-hhhccCCCcHHHH
Confidence 588999999875322111100011010 11122333322 123556777776665422 2223222
Q ss_pred -CHHHHHHHHHHHHHHhcCCCCCCCCCCeeEEEE----ecCCC-CCCCCCCCCCcccCCCCch--HHhhcccCCcEEEec
Q 004458 500 -DPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICT----RWGSD-PFTHGSYSHVRVRSSGSDY--DILAESVGSRLFFAG 571 (752)
Q Consensus 500 -sdeel~~~vl~~L~~if~~~~~~vp~p~~~~v~----rW~~d-p~~~Gsys~~~pg~~~~~~--~~l~~pv~~~L~fAG 571 (752)
..+++.+++++.|++++|.. .+-+..... .|... -...|+|....-......+ +...+|+ +|||+||
T Consensus 391 ~~k~~~~~~il~~l~~~~p~l----~~~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i-~gLyl~G 465 (493)
T TIGR02730 391 AKKEADAERIIDRLEKIFPGL----DSAIDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAI-PGLYCVG 465 (493)
T ss_pred HHHHHHHHHHHHHHHHHCCCh----hhcEEEEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCCCCC-CCeEEec
Confidence 24568889999999998642 111111110 12111 1113555321110000011 1235677 8999999
Q ss_pred ccccCcCCcchHHHHHHHHHHHHHHHHHh
Q 004458 572 EATTRQYPATMHGAYLSGLREASRILRAT 600 (752)
Q Consensus 572 e~ts~~~~g~veGAl~SG~rAA~~Il~~l 600 (752)
+++.+ ++.+.||+.||+.||+.|++++
T Consensus 466 ~~~~p--G~Gv~g~~~sG~~~a~~i~~~~ 492 (493)
T TIGR02730 466 DSCFP--GQGLNAVAFSGFACAHRVAADL 492 (493)
T ss_pred CcCCC--CCCHHHHHHHHHHHHHHHHhhc
Confidence 99964 3689999999999999999764
No 27
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.94 E-value=2e-26 Score=231.02 Aligned_cols=323 Identities=20% Similarity=0.207 Sum_probs=217.1
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHHHHHcCCCcc
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLSIPLH 242 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L~~~LGl~~~ 242 (752)
.+|+|||+||+||+||+.|+.+|++|+||||..-+|||..|.+..+ ..+|.|+.+|...+. ++..+.+.+.-..
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~----g~~DhGAqYfk~~~~-~F~~~Ve~~~~~g- 75 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDG----GRFDHGAQYFKPRDE-LFLRAVEALRDDG- 75 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCC----ccccccceeecCCch-HHHHHHHHHHhCC-
Confidence 4799999999999999999999999999999999999999999986 469999999876543 2222222111000
Q ss_pred cccCCCceecCCCccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 004458 243 KVRDNCPLYKPDGAPVNKEIDSKVEFIFNKLLDKVMELRKIKGGFANDVSLGSVLETLRQLYAVARSTEERELLDWHLAN 322 (752)
Q Consensus 243 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~sl~e~l~~l~~~~~~~~s~~~~~~l~~~~~~ 322 (752)
+-+ + +.+ ..
T Consensus 76 -----------------------------------------lV~----~----------------W~~----------~~ 84 (331)
T COG3380 76 -----------------------------------------LVD----V----------------WTP----------AV 84 (331)
T ss_pred -----------------------------------------cee----e----------------ccc----------cc
Confidence 000 0 000 00
Q ss_pred hhhccCCCchhhhhhccccCCCccCCC--CceecCCCHHHHHHHHHcCCcEEcCceEEEEEecCCcEEEEE-C-CEEEEe
Q 004458 323 LEYANAGCLSDLSATYWDQDDPYEMGG--DHCFLAGGNWRLIKALCEGVPIFYEKTVNTIKYGNEGVEVIA-G-DQMFQA 398 (752)
Q Consensus 323 le~~~~~~l~~ls~~~~~~~~~~~~~g--~~~~~~gG~~~L~~aLa~gl~I~ln~~V~~I~~~~~gv~V~~-~-g~~~~A 398 (752)
..+.... ....+ ..|.-.-||++|.+.|+..++|+++++|++|...++.|++++ + +....+
T Consensus 85 ~~~~~~~---------------~~~~~d~~pyvg~pgmsalak~LAtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~ 149 (331)
T COG3380 85 WTFTGDG---------------SPPRGDEDPYVGEPGMSALAKFLATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQF 149 (331)
T ss_pred cccccCC---------------CCCCCCCCccccCcchHHHHHHHhccchhhhhhhhhhheecCCeeEEEecCCCccccc
Confidence 0000000 00001 113456799999999999999999999999999999999987 3 346789
Q ss_pred cEEEEcCChhhHhhccccCCCCCcHHHHHHHHhcCCccEEEEEEEecCcccccCCCcceeeccCCCCCceEEEEeecccc
Q 004458 399 DMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFWGEELDTFGCLNEQSSKRGEFFLFYGYHTV 478 (752)
Q Consensus 399 D~VV~AvPl~vLk~~~i~f~P~Lp~~k~~ai~~l~~g~~~kV~L~fd~~fW~~~~~~fg~l~~~~~~~~~~~~~~~~~~~ 478 (752)
|.||+|+|.+.+..+.....-.+|...++++..+.|.+...+.|.|+.+.- .+..|...++.. -. ++-.+...+
T Consensus 150 d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~---~P~~G~~vdg~~--la-Wla~d~sK~ 223 (331)
T COG3380 150 DDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQPLD---RPWPGNFVDGHP--LA-WLARDASKK 223 (331)
T ss_pred ceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhcCCccCC---CCCCCcccCCCe--ee-eeeccccCC
Confidence 999999998887654322234688899999999999999999999986641 112222222211 01 111121111
Q ss_pred ---CCCcEEEEEeccchhhhhccCCHHHHHHHHHHHHHHhcCCCCCCCCCCeeEEEEecCCCCCCCCCCCCCcccCCCCc
Q 004458 479 ---SGGPVLNALVAGEAAKTFESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDPFTHGSYSHVRVRSSGSD 555 (752)
Q Consensus 479 ---~g~~vL~~~~~g~~a~~~~~lsdeel~~~vl~~L~~if~~~~~~vp~p~~~~v~rW~~dp~~~Gsys~~~pg~~~~~ 555 (752)
+.+.+++.-...+.++...+.+++..+.........++++ .+++|.-...++|. |+. |......
T Consensus 224 g~~p~~~~~vvqasp~wSr~h~~~~~e~~i~~l~aA~~~~~~~---~~~~p~~s~~H~Wr--------YA~--P~~~~~~ 290 (331)
T COG3380 224 GHVPDGEIWVVQASPDWSREHLDHPAEQVIVALRAAAQELDGD---RLPEPDWSDAHRWR--------YAI--PNDAVAG 290 (331)
T ss_pred CCCCcCceEEEEeCchHHHHhhcCCHHHHHHHHHHhhhhccCC---CCCcchHHHhhccc--------ccc--ccccccC
Confidence 2223555555556666777888888887777777777765 36788777888886 332 2211111
Q ss_pred hHHhhcccCCcEEEecccccCcCCcchHHHHHHHHHHHHHHHHHh
Q 004458 556 YDILAESVGSRLFFAGEATTRQYPATMHGAYLSGLREASRILRAT 600 (752)
Q Consensus 556 ~~~l~~pv~~~L~fAGe~ts~~~~g~veGAl~SG~rAA~~Il~~l 600 (752)
-.....+- .+||+||||++. +-+|||++||+.+|.+|++.+
T Consensus 291 ~~L~ad~~-~~l~~cGDwc~G---grVEgA~LSGlAaA~~i~~~L 331 (331)
T COG3380 291 PPLDADRE-LPLYACGDWCAG---GRVEGAVLSGLAAADHILNGL 331 (331)
T ss_pred CccccCCC-CceeeecccccC---cchhHHHhccHHHHHHHHhcC
Confidence 11111222 689999999984 789999999999999998753
No 28
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.93 E-value=4.7e-24 Score=220.29 Aligned_cols=274 Identities=17% Similarity=0.159 Sum_probs=192.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHHHHHcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLSIP 240 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L~~~LGl~ 240 (752)
..++|+|||+|+|||+|||.|++. ++|++||+.+++||++.|+..+.++.++.+|.|..++++..+..+..|++.+|++
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~ 85 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVD 85 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCC
Confidence 467999999999999999999876 7999999999999999999876556668999999999996555688899999999
Q ss_pred cccccCCCceecCCCcc----------ccccchHHHHHHHHHHHHHHHHHHHHhc-----CCCCCCCHHHHHHHH-----
Q 004458 241 LHKVRDNCPLYKPDGAP----------VNKEIDSKVEFIFNKLLDKVMELRKIKG-----GFANDVSLGSVLETL----- 300 (752)
Q Consensus 241 ~~~~~~~~~~~~~~G~~----------~~~~~~~~~~~~~~~ll~~~~~~~~~~~-----~~~~~~sl~e~l~~l----- 300 (752)
......++++....|.+ +-..+.+.+...|..++..+..+..... ....++++.+|+..-
T Consensus 86 t~as~Msf~v~~d~gglEy~g~tgl~~L~aqk~n~l~pRf~~mlaeiLrf~r~~~~~~d~~~~~~~tl~~~L~~~~f~~a 165 (447)
T COG2907 86 TKASFMSFSVSLDMGGLEYSGLTGLAGLLAQKRNLLRPRFPCMLAEILRFYRSDLAPSDNAGQGDTTLAQYLKQRNFGRA 165 (447)
T ss_pred CcccceeEEEEecCCceeeccCCCccchhhccccccchhHHHHHHHHHHHhhhhccchhhhcCCCccHHHHHHhcCccHH
Confidence 88777777776555432 1233344456777777777666654322 124678999998751
Q ss_pred ------HHHHHhhCCHHHHHHHHHHHHh--hhhccCCCchhhhhhccccCCCccCCCCceecCCCHHHHHHHHHcCCc--
Q 004458 301 ------RQLYAVARSTEERELLDWHLAN--LEYANAGCLSDLSATYWDQDDPYEMGGDHCFLAGGNWRLIKALCEGVP-- 370 (752)
Q Consensus 301 ------~~~~~~~~s~~~~~~l~~~~~~--le~~~~~~l~~ls~~~~~~~~~~~~~g~~~~~~gG~~~L~~aLa~gl~-- 370 (752)
..+....|+........+.+.+ ..+.+.+.+. ......|..+.||....++.|+.++.
T Consensus 166 f~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~nhGll~------------l~~rp~wrtV~ggS~~yvq~laa~~~~~ 233 (447)
T COG2907 166 FVEDFLQPLVAAIWSTPLADASRYPACNFLVFTDNHGLLY------------LPKRPTWRTVAGGSRAYVQRLAADIRGR 233 (447)
T ss_pred HHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHhccCcee------------cCCCCceeEcccchHHHHHHHhccccce
Confidence 1111112222222222111111 1222222222 11123457899999999999999875
Q ss_pred EEcCceEEEEEecCCcEEEEE-CCEEEEecEEEEcCChhhHhhccccCCCCCcHHHHHHHHhcCCccEEEEEEEecCccc
Q 004458 371 IFYEKTVNTIKYGNEGVEVIA-GDQMFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFGLLNKVAMVFPYVFW 449 (752)
Q Consensus 371 I~ln~~V~~I~~~~~gv~V~~-~g~~~~AD~VV~AvPl~vLk~~~i~f~P~Lp~~k~~ai~~l~~g~~~kV~L~fd~~fW 449 (752)
|+++++|.+|..-.+||.|+. +|++-.+|+||+|+-++.... .-++-+++.++.+.+++|. .+..+++-|..+.
T Consensus 234 i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~----mL~e~sp~e~qll~a~~Ys-~n~aVlhtd~~lm 308 (447)
T COG2907 234 IETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALA----LLDEPSPEERQLLGALRYS-ANTAVLHTDASLM 308 (447)
T ss_pred eecCCceeeeeeCCCceEEecCCCCccccceeeeecChHHHHH----hcCCCCHHHHHHHHhhhhh-hceeEEeeccccc
Confidence 999999999999999998865 799999999999996554432 2233344557799999998 5666667677666
Q ss_pred ccC
Q 004458 450 GEE 452 (752)
Q Consensus 450 ~~~ 452 (752)
+..
T Consensus 309 PrR 311 (447)
T COG2907 309 PRR 311 (447)
T ss_pred ccc
Confidence 543
No 29
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.91 E-value=4.8e-22 Score=210.99 Aligned_cols=416 Identities=17% Similarity=0.172 Sum_probs=254.9
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeE--EEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCc--cHHHHHHH
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKV--VVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHA--NPLGVLAR 235 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v--~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~--n~l~~L~~ 235 (752)
...++|+|+|||+|||+|||+|++.+.+| +|+|+.+|+||+++|.+.++ ++.+|.|+..+.+... -.+..|+.
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~n---g~ifE~GPrtlrpag~~g~~~l~lv~ 85 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQN---GFIFEEGPRTLRPAGPGGAETLDLVS 85 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCC---ceeeccCCCccCcCCcchhHHHHHHH
Confidence 45689999999999999999999998765 66999999999999955543 4999999999988753 23667899
Q ss_pred HcCCCcc--cccCCCc-----eecCCCccccccchH----------HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 004458 236 QLSIPLH--KVRDNCP-----LYKPDGAPVNKEIDS----------KVEFIFNKLLDKVMELRKIKGGFANDVSLGSVLE 298 (752)
Q Consensus 236 ~LGl~~~--~~~~~~~-----~~~~~G~~~~~~~~~----------~~~~~~~~ll~~~~~~~~~~~~~~~~~sl~e~l~ 298 (752)
+||++.+ .++..++ +.+..|+....+... ....++..++.+ .++........++|+++|++
T Consensus 86 dLGl~~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~~~l~p~~k~L~~a~l~e--~fr~~~~~~~~dESV~sF~~ 163 (491)
T KOG1276|consen 86 DLGLEDELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLKFSLQPFGKPLLEAFLRE--LFRKKVSDPSADESVESFAR 163 (491)
T ss_pred HcCccceeeecCCCChhhhheeeccCcccccCCcccccccccccCcccchhHHHHHhh--hccccCCCCCccccHHHHHH
Confidence 9999643 4444332 334566654433221 111122222221 12222233467889999887
Q ss_pred HHHH----------H----HHhhCCHHHHHHHHHHHHhhhhccCCCchhhhhhcc-----ccC------CCccCCCCcee
Q 004458 299 TLRQ----------L----YAVARSTEERELLDWHLANLEYANAGCLSDLSATYW-----DQD------DPYEMGGDHCF 353 (752)
Q Consensus 299 ~l~~----------~----~~~~~s~~~~~~l~~~~~~le~~~~~~l~~ls~~~~-----~~~------~~~~~~g~~~~ 353 (752)
+-.. + |....+.-..+.....++..|...+..+........ -.. .........+.
T Consensus 164 RrfG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~s 243 (491)
T KOG1276|consen 164 RRFGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFS 243 (491)
T ss_pred HhhhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhh
Confidence 5211 0 111111111222222333444433332211111100 000 00111223467
Q ss_pred cCCCHHHHHHHHHcCC-----cEEcCceEEEEEecCC-cEEEEE---CC-EEEEecEEEEcCChhhHhhccccCCCCCcH
Q 004458 354 LAGGNWRLIKALCEGV-----PIFYEKTVNTIKYGNE-GVEVIA---GD-QMFQADMVLCTVPLGVLKEKTIKFEPELPQ 423 (752)
Q Consensus 354 ~~gG~~~L~~aLa~gl-----~I~ln~~V~~I~~~~~-gv~V~~---~g-~~~~AD~VV~AvPl~vLk~~~i~f~P~Lp~ 423 (752)
++||++.+++++.+.+ .|.++-++..+..... +|.++. ++ +.+..++++.|+|..++.++ .|.+.+
T Consensus 244 l~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~l----l~~~~~ 319 (491)
T KOG1276|consen 244 LKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAKL----LRGLQN 319 (491)
T ss_pred hhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhhhh----ccccch
Confidence 8999999999999854 4778888888876554 477654 33 34566777789999998763 455555
Q ss_pred HHHHHHHhcCCccEEEEEEEecCcccccCCCcceeeccC--CCCCceEEEEeecc---ccCCCcEEEEEeccchhhh--h
Q 004458 424 RKVAAIDRLGFGLLNKVAMVFPYVFWGEELDTFGCLNEQ--SSKRGEFFLFYGYH---TVSGGPVLNALVAGEAAKT--F 496 (752)
Q Consensus 424 ~k~~ai~~l~~g~~~kV~L~fd~~fW~~~~~~fg~l~~~--~~~~~~~~~~~~~~---~~~g~~vL~~~~~g~~a~~--~ 496 (752)
....++..+.|.++..|++.|+..--+-+..+||++.+. .+.....-+.|+.. ..++.+.+++++.|...+. .
T Consensus 320 sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s~~vtvm~gg~~~~n~~~ 399 (491)
T KOG1276|consen 320 SLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPSPKVTVMMGGGGSTNTSL 399 (491)
T ss_pred hhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecccCCCCCCCceEEEEecccccccCcC
Confidence 568899999999999999999875334567899999984 32222333333321 1123335666665544432 3
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCCCCCeeEEEEecCCCCCCCCCCCCCcccCCC---CchHHhhcccCCcEEEeccc
Q 004458 497 ESMDPSFLLHRVLNVLRGIYNPKGIDVPDPLQTICTRWGSDPFTHGSYSHVRVRSSG---SDYDILAESVGSRLFFAGEA 573 (752)
Q Consensus 497 ~~lsdeel~~~vl~~L~~if~~~~~~vp~p~~~~v~rW~~dp~~~Gsys~~~pg~~~---~~~~~l~~pv~~~L~fAGe~ 573 (752)
...+++|+++.+.++|+++++-.. .|....++-|.+ |...+.+|+.. .....+.+..+.+|++||.|
T Consensus 400 ~~~S~ee~~~~v~~alq~~Lgi~~----~P~~~~v~l~~~------ciPqy~vGh~~~le~a~~~l~~~~g~~l~l~G~~ 469 (491)
T KOG1276|consen 400 AVPSPEELVNAVTSALQKMLGISN----KPVSVNVHLWKN------CIPQYTVGHDDVLEAAKSMLTDSPGLGLFLGGNH 469 (491)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCC----Ccccccceehhh------cccceecchHHHHHHHHHHHHhCCCCceEeeccc
Confidence 445899999999999999998542 366555556653 22223344311 01112222223699999999
Q ss_pred ccCcCCcchHHHHHHHHHHHHHHH
Q 004458 574 TTRQYPATMHGAYLSGLREASRIL 597 (752)
Q Consensus 574 ts~~~~g~veGAl~SG~rAA~~Il 597 (752)
+.. -.+...+.||.++|.+++
T Consensus 470 y~G---v~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 470 YGG---VSVGDCIESGRKTAVEVI 490 (491)
T ss_pred cCC---CChhHHHHhhHHHHHhhc
Confidence 984 458889999999988764
No 30
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.86 E-value=1.4e-19 Score=206.93 Aligned_cols=235 Identities=24% Similarity=0.241 Sum_probs=146.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHHHHHcC-C
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLS-I 239 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L~~~LG-l 239 (752)
+.+||||||||+.||+||..|+++|++|+||||++++||+++|++..| +.+|+|++++...... .++++++ +
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~G----f~fd~G~~~~~~~~~~---~~~~~l~~l 74 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDG----FRFDTGPSWYLMPDPG---PLFRELGNL 74 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccc----eEeccCcceeecCchH---HHHHHhccC
Confidence 468999999999999999999999999999999999999999999985 9999999998877643 4556666 4
Q ss_pred Cccc-----ccCCCceecCCCccccccchHHH------------HHHHHHHHHHHHHHHHHh-cCC----C-----CCCC
Q 004458 240 PLHK-----VRDNCPLYKPDGAPVNKEIDSKV------------EFIFNKLLDKVMELRKIK-GGF----A-----NDVS 292 (752)
Q Consensus 240 ~~~~-----~~~~~~~~~~~G~~~~~~~~~~~------------~~~~~~ll~~~~~~~~~~-~~~----~-----~~~s 292 (752)
+... ....+..+..+|..+....+..- ...+..++....+..+.. ... . ...+
T Consensus 75 ~~~~l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (487)
T COG1233 75 DADGLDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDGEALARYLRLLARLYELLAALLLAPPRSELLLVPDT 154 (487)
T ss_pred cccceeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhcCCCchhhhhhcccc
Confidence 4332 23444566677776654433211 112223333222221111 111 0 1122
Q ss_pred HHHHHHHHH-------H-HHHhhCCHHHHHHHHHHHHhhhhccCCCch-hhhhhccccCCCccCCCCceecCCCHHHHHH
Q 004458 293 LGSVLETLR-------Q-LYAVARSTEERELLDWHLANLEYANAGCLS-DLSATYWDQDDPYEMGGDHCFLAGGNWRLIK 363 (752)
Q Consensus 293 l~e~l~~l~-------~-~~~~~~s~~~~~~l~~~~~~le~~~~~~l~-~ls~~~~~~~~~~~~~g~~~~~~gG~~~L~~ 363 (752)
...++.... . +...+.++..+..+.+...... ....... ......+ ....+++.+++||++.|++
T Consensus 155 ~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~-~~p~~~~a~~~~~~~-----~~~~~G~~~p~GG~~al~~ 228 (487)
T COG1233 155 PERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYGG-APPSTPPALYLLLSH-----LGLSGGVFYPRGGMGALVD 228 (487)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCCchhHHHHHHHH-----hcccCCeeeeeCCHHHHHH
Confidence 222222110 0 0111334444444443322221 1111111 1111111 1245567889999999999
Q ss_pred HHHc-----CCcEEcCceEEEEEecCCc-EEEEE-CCEEEEecEEEEcCChh
Q 004458 364 ALCE-----GVPIFYEKTVNTIKYGNEG-VEVIA-GDQMFQADMVLCTVPLG 408 (752)
Q Consensus 364 aLa~-----gl~I~ln~~V~~I~~~~~g-v~V~~-~g~~~~AD~VV~AvPl~ 408 (752)
+|++ |++|+++++|++|..++++ ++|++ +++.+++|.||+++-..
T Consensus 229 aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~~ 280 (487)
T COG1233 229 ALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADPA 280 (487)
T ss_pred HHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCchh
Confidence 9987 8999999999999998874 66665 45689999999999663
No 31
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=3.4e-20 Score=204.34 Aligned_cols=411 Identities=20% Similarity=0.145 Sum_probs=218.9
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHHHHHcCCCcc
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLSIPLH 242 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L~~~LGl~~~ 242 (752)
++|+|+|||+|||+||++|+++|++|+|+|+++++||.+.+++..+ +...|.|-|+|+++|.| +..++++++.+.+
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~d---g~~~E~glh~f~~~Y~n-~~~ll~~~~~~~~ 76 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSD---GNHVEHGLHVFFGCYYN-LLTLLKELPIEDR 76 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCC---CCeeeeeeEEechhHHH-HHHHhhhCCchhe
Confidence 5899999999999999999999999999999999999999999864 36899999999999987 6678899988644
Q ss_pred cccCC-Ccee-c---CCCccc-------cccchHHHHHHHHHHHHHHHHHH------------HHhcCCCCCCCHHHHHH
Q 004458 243 KVRDN-CPLY-K---PDGAPV-------NKEIDSKVEFIFNKLLDKVMELR------------KIKGGFANDVSLGSVLE 298 (752)
Q Consensus 243 ~~~~~-~~~~-~---~~G~~~-------~~~~~~~~~~~~~~ll~~~~~~~------------~~~~~~~~~~sl~e~l~ 298 (752)
..... ...+ - ..|..- +.+............+....+.+ .......++.|..+|+.
T Consensus 77 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~~eld~~s~~d~l~ 156 (485)
T COG3349 77 LQLREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPRREKIRFVLRLGDAPIGADRSLRELDKISFADWLK 156 (485)
T ss_pred eehHhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCHHHHhHHhhccccccchhHHHHHHHhcccHHHHHH
Confidence 32111 1111 0 111100 00000000000000000000000 00001124567777765
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhhhhcc-----C-CCchhhhhhccccCCCccCCCCceecCCCHH-----HHHHHHH-
Q 004458 299 TLRQLYAVARSTEERELLDWHLANLEYAN-----A-GCLSDLSATYWDQDDPYEMGGDHCFLAGGNW-----RLIKALC- 366 (752)
Q Consensus 299 ~l~~~~~~~~s~~~~~~l~~~~~~le~~~-----~-~~l~~ls~~~~~~~~~~~~~g~~~~~~gG~~-----~L~~aLa- 366 (752)
.. .......++.+......+-+.. + ..+..+.+....+. -...+..+.++.. .+.+.+-
T Consensus 157 ~~-----g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~----~~~i~~~~~g~~~E~~~~p~~~yi~~ 227 (485)
T COG3349 157 EK-----GAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTL----EASILRNLRGSPDEVLLQPWTEYIPE 227 (485)
T ss_pred Hh-----CCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhcc----CcchhhhhcCCCcceeeehhhhhccc
Confidence 41 1122233333333322221111 1 11111111111110 0111122333332 3344454
Q ss_pred cCCcEEcCceEEEEEecCCc-----EEEEECCEE---EEecEEEEcCChhhHhhccccCCCCCcHHHHHHHHhcCCccEE
Q 004458 367 EGVPIFYEKTVNTIKYGNEG-----VEVIAGDQM---FQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFGLLN 438 (752)
Q Consensus 367 ~gl~I~ln~~V~~I~~~~~g-----v~V~~~g~~---~~AD~VV~AvPl~vLk~~~i~f~P~Lp~~k~~ai~~l~~g~~~ 438 (752)
.|.+++...+|+.|...... +.+...+.. ..++.++.+.....++.... .+.-+....+.|-.+...++.
T Consensus 228 ~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~v~~~~~~~p--s~W~~~~~f~~ly~l~~~p~~ 305 (485)
T COG3349 228 RGRKVHADYPVKELDLDGARGLAKVTGGDVTGPEQEQQAALAVVDAFAVQRFKRDLP--SEWPKWSNFDGLYGLRLVPVI 305 (485)
T ss_pred cCceeeccceeeeeeccccccccceEeeeecCcceEeeehhhhhcccccchHhhcCc--cccccccccccccccccccee
Confidence 37899999999999887632 222222333 34556666666666553111 001112234556667788999
Q ss_pred EEEEEecCcccccCC--Ccceeec---cCCCCCceEEEE----eeccccCCCcEEEEEeccchhhhhccCCHHHHHHHHH
Q 004458 439 KVAMVFPYVFWGEEL--DTFGCLN---EQSSKRGEFFLF----YGYHTVSGGPVLNALVAGEAAKTFESMDPSFLLHRVL 509 (752)
Q Consensus 439 kV~L~fd~~fW~~~~--~~fg~l~---~~~~~~~~~~~~----~~~~~~~g~~vL~~~~~g~~a~~~~~lsdeel~~~vl 509 (752)
++.+.|+...|.... ..|+... ......+.++.. ..+..+.....+...+. .+..|...++++++....
T Consensus 306 ~~~l~~~~~~~~~~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~--~~~~~~~~~~~~~~a~~e 383 (485)
T COG3349 306 TLHLRFDGWVTELTDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKVLA--PGWPFLFESDEAIVATFE 383 (485)
T ss_pred EEEEeecCccccccccchhhhhhccccccccCCceeeeccccchhhccccchhhhhhhhc--ccccccccchhhHHHHHH
Confidence 999999964433221 1111110 011101111100 01111111112222221 223466678899999999
Q ss_pred HHHHHhcCCCCCCCCCCeeE--EEEecCCCCCCCCCCCCCcccCCCCchHHhhcccCCcEEEecccccCcCCcchHHHHH
Q 004458 510 NVLRGIYNPKGIDVPDPLQT--ICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVGSRLFFAGEATTRQYPATMHGAYL 587 (752)
Q Consensus 510 ~~L~~if~~~~~~vp~p~~~--~v~rW~~dp~~~Gsys~~~pg~~~~~~~~l~~pv~~~L~fAGe~ts~~~~g~veGAl~ 587 (752)
..+..++|+... ..... ++..-....++.|+|.+ .+...+|+ +|+++|||++...+.++||||..
T Consensus 384 ~~~~~~vP~~~~---a~~~~~~i~~~q~~~~~~pgs~~~---------rP~~~Tpv-~N~~laGd~~~~~~~~smE~A~~ 450 (485)
T COG3349 384 KELYELVPSLAE---AKLKSSVLVNQQSLYGLAPGSYHY---------RPEQKTPI-PNLLLAGDYTKQPYLGSMEGATL 450 (485)
T ss_pred HHhhhcCCchhc---ccccccceeccccccccCCCcccc---------CCCCCCCc-cchhhccceeecCCcCccchhhh
Confidence 999988876421 11111 11111222333444433 33345677 99999999999888899999999
Q ss_pred HHHHHHHHHHHHhhcc
Q 004458 588 SGLREASRILRATRVQ 603 (752)
Q Consensus 588 SG~rAA~~Il~~l~~~ 603 (752)
||++||+.|++.+...
T Consensus 451 sGl~AA~~v~~~~~~~ 466 (485)
T COG3349 451 SGLLAANAILDNLGHH 466 (485)
T ss_pred hHHHHHHHHHHhhhhc
Confidence 9999999999887643
No 32
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.63 E-value=5e-14 Score=150.86 Aligned_cols=240 Identities=20% Similarity=0.185 Sum_probs=140.7
Q ss_pred ccCCCCceecCCCHHHHHHHHHc-----CCcEEcCceEEEEEecCCcEE-EE-ECCEEEEecEEEEcCChhhHhhccccC
Q 004458 345 YEMGGDHCFLAGGNWRLIKALCE-----GVPIFYEKTVNTIKYGNEGVE-VI-AGDQMFQADMVLCTVPLGVLKEKTIKF 417 (752)
Q Consensus 345 ~~~~g~~~~~~gG~~~L~~aLa~-----gl~I~ln~~V~~I~~~~~gv~-V~-~~g~~~~AD~VV~AvPl~vLk~~~i~f 417 (752)
....|.+.++.||++.+..++++ |.+|.+++.|.+|..+++.+. |. .+|+++.+..||+++.+..+-. ..
T Consensus 250 d~~~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~---kL 326 (561)
T KOG4254|consen 250 DGHKGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFE---KL 326 (561)
T ss_pred cccCCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHH---Hh
Confidence 34577889999999999999987 568999999999999885543 44 4999999999999986655432 22
Q ss_pred CC--CCcHHHHHHHHhcCCc-cEEE----EEEEecCcccccCCCccee---ec-----------cC-----CCCCceEEE
Q 004458 418 EP--ELPQRKVAAIDRLGFG-LLNK----VAMVFPYVFWGEELDTFGC---LN-----------EQ-----SSKRGEFFL 471 (752)
Q Consensus 418 ~P--~Lp~~k~~ai~~l~~g-~~~k----V~L~fd~~fW~~~~~~fg~---l~-----------~~-----~~~~~~~~~ 471 (752)
.| .||++. .|+.+.+. +..| .+++.+..- ....+..++ +. .+ .+.++..++
T Consensus 327 lp~e~LPeef--~i~q~d~~spv~k~~~psFl~~~~~~-~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~ 403 (561)
T KOG4254|consen 327 LPGEALPEEF--VIQQLDTVSPVTKDKLPSFLCLPNTK-SLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIEL 403 (561)
T ss_pred CCCccCCchh--hhhhcccccccccccCcceeecCCCC-CCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEE
Confidence 23 367665 66666543 3333 344433221 111111110 00 11 112232222
Q ss_pred Ee-----eccccCCCcEEEEEeccchhhhhccCC-------HHHHHHHHHHHHHHhcCCCCCC-----CCCCeeEEEEec
Q 004458 472 FY-----GYHTVSGGPVLNALVAGEAAKTFESMD-------PSFLLHRVLNVLRGIYNPKGID-----VPDPLQTICTRW 534 (752)
Q Consensus 472 ~~-----~~~~~~g~~vL~~~~~g~~a~~~~~ls-------deel~~~vl~~L~~if~~~~~~-----vp~p~~~~v~rW 534 (752)
.. +.-+|++++++..|..+.. ..|++.+ .++..++++..+.+++|..... +-.|.+. +|.
T Consensus 404 siPS~lDptlappg~Hvl~lf~~~t~-~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfsssv~~~dvgTP~t~--qr~ 480 (561)
T KOG4254|consen 404 SIPSSLDPTLAPPGKHVLHLFTQYTP-EEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSSSVESYDVGTPPTH--QRF 480 (561)
T ss_pred ecccccCCCcCCCCceEEEEeccCCc-cccccCCcccchHHHHHHHHHHHHHHHHHcCCccceEEEEecCCCchh--hHH
Confidence 21 2235678888888765543 4455554 3668889999999998754211 1112111 011
Q ss_pred CCCCCCCCCCCCCcccC--CCCchHH-----hhcccCCcEEEecccccCcCCcchHHHHHHHHHHHHHHHHHh
Q 004458 535 GSDPFTHGSYSHVRVRS--SGSDYDI-----LAESVGSRLFFAGEATTRQYPATMHGAYLSGLREASRILRAT 600 (752)
Q Consensus 535 ~~dp~~~Gsys~~~pg~--~~~~~~~-----l~~pv~~~L~fAGe~ts~~~~g~veGAl~SG~rAA~~Il~~l 600 (752)
-. ..+|.|.+.+.+. ..-.++. ..+|+ ++||+||+.+.+ .|.|-+|- |..+|...+.+.
T Consensus 481 l~--~~~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI-~~LYlcGs~afP--GgGV~a~a--G~~~A~~a~~~~ 546 (561)
T KOG4254|consen 481 LG--RPGGNIFHGAMGLDQGYLHRPVMAWSNYSTPI-PGLYLCGSGAFP--GGGVMAAA--GRLAAHSAILDR 546 (561)
T ss_pred hc--CCCCcccCcccccccccccCCccccccCCCCC-CceEEecCCCCC--CCCccccc--hhHHHHHHhhhh
Confidence 00 1145554422221 1111222 36788 999999999986 45565553 888888877665
No 33
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.53 E-value=1.4e-12 Score=143.50 Aligned_cols=234 Identities=14% Similarity=0.104 Sum_probs=132.2
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHHHHHcCCCcc
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLSIPLH 242 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L~~~LGl~~~ 242 (752)
+||+|||||++||++|++|++.|.+|+|+|+++.+||.+.+....+ ....+.|+|+++..... +..++.++. +..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g---~~~~~~G~h~f~t~~~~-v~~~~~~~~-~~~ 76 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDET---ILFHQYGPHIFHTNNQY-VWDYISPFF-ELN 76 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCC---ceEEeecceeEecCcHH-HHHHHHhhc-ccc
Confidence 5899999999999999999999999999999999999998876543 24458999999875543 444555432 111
Q ss_pred cccCCCceecCCCccccccchHH-HHHHHHHH-HHHHH-HHHHHhcC--CCCCCCHHHHHHHHHHHHHhhCCHHHHHHHH
Q 004458 243 KVRDNCPLYKPDGAPVNKEIDSK-VEFIFNKL-LDKVM-ELRKIKGG--FANDVSLGSVLETLRQLYAVARSTEERELLD 317 (752)
Q Consensus 243 ~~~~~~~~~~~~G~~~~~~~~~~-~~~~~~~l-l~~~~-~~~~~~~~--~~~~~sl~e~l~~l~~~~~~~~s~~~~~~l~ 317 (752)
... .......+|+.++.|.... +..++... ...+. .+...... .....++.++.+......+.. -...++.
T Consensus 77 ~~~-~~~~~~~~g~~~~~P~~~~~i~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~G~~---lye~ff~ 152 (377)
T TIGR00031 77 NYQ-HRVLALYNNLDLTLPFNFNQFRKLLGVKDAQELQNFFNAQFKYGDHVPLEELQEIADPDIQLLYQF---LYQKVYK 152 (377)
T ss_pred cee-EEEEEEECCeEEccCCCHHHHHHhcccchHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHH---HHHHhcc
Confidence 222 2234456788888776522 33333211 11111 11111110 111245666664432221110 0000000
Q ss_pred HHHHhhhhccCCCchhhhhhc-------cccCCCccCCCCceecCCCHHHHHHHHHc--CCcEEcCceEEEEEecCCcEE
Q 004458 318 WHLANLEYANAGCLSDLSATY-------WDQDDPYEMGGDHCFLAGGNWRLIKALCE--GVPIFYEKTVNTIKYGNEGVE 388 (752)
Q Consensus 318 ~~~~~le~~~~~~l~~ls~~~-------~~~~~~~~~~g~~~~~~gG~~~L~~aLa~--gl~I~ln~~V~~I~~~~~gv~ 388 (752)
. ..+-..+-..+.++... ...++.+....-...|++|+.+++++|.+ +++|++|+.+..++..++++.
T Consensus 153 ~---Yt~K~Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~Gyt~~~~~ml~~~~i~v~l~~~~~~~~~~~~~~~ 229 (377)
T TIGR00031 153 P---YTVKQWGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGGYTKLFEKMLDHPLIDVKLNCHINLLKDKDSQLH 229 (377)
T ss_pred c---cCceeeCCChHHCCHHHeEecceEecCCCCcccccccccccccHHHHHHHHHhcCCCEEEeCCccceeecccccee
Confidence 0 00111111222222110 01122222222345789999999999996 599999998888876554455
Q ss_pred EEECCEEEEecEEEEcCChhhHh
Q 004458 389 VIAGDQMFQADMVLCTVPLGVLK 411 (752)
Q Consensus 389 V~~~g~~~~AD~VV~AvPl~vLk 411 (752)
+. ++.+. +.||.|.|++.+-
T Consensus 230 ~~--~~~~~-~~vi~Tg~id~~f 249 (377)
T TIGR00031 230 FA--NKAIR-KPVIYTGLIDQLF 249 (377)
T ss_pred ec--ccccc-CcEEEecCchHHH
Confidence 42 22333 8899999998763
No 34
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.50 E-value=1.2e-12 Score=147.10 Aligned_cols=236 Identities=15% Similarity=0.227 Sum_probs=140.3
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEEecCC----------------CCceEEEeccceeEcC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQKMGK----------------KGEFAAVDLGGSVITG 224 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~~g----------------~g~~~~~d~Ga~~i~~ 224 (752)
+.+||||||+|++|+.+|..|++.|.+|+++|+++..||+++|++... ....+.+|+.++++..
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~~ 82 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIMA 82 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeeec
Confidence 468999999999999999999999999999999999999999984321 0122456666666654
Q ss_pred CCccHHHHHHHHcCCCccc-cc--CCCceecCCCccccccchH--HH---------HHHHHHHHHHHHHHHHH----hcC
Q 004458 225 IHANPLGVLARQLSIPLHK-VR--DNCPLYKPDGAPVNKEIDS--KV---------EFIFNKLLDKVMELRKI----KGG 286 (752)
Q Consensus 225 ~~~n~l~~L~~~LGl~~~~-~~--~~~~~~~~~G~~~~~~~~~--~~---------~~~~~~ll~~~~~~~~~----~~~ 286 (752)
.. .+..++.+.++.... +. +...+|..+|+....+... .+ ...+.+++..+..+.+. ...
T Consensus 83 ~G--~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l~kfl~~v~~~~~~~~~~~~~ 160 (443)
T PTZ00363 83 SG--ELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVSNYDENDPETHKG 160 (443)
T ss_pred CC--hHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHHHHHHHHHHhhccCChhhhcc
Confidence 42 355666677764331 11 1222332566654433311 11 11222333333222110 111
Q ss_pred C-CCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhh---hhccCCCchhhhhh-cccc-CCCccCCCCceecCCCHHH
Q 004458 287 F-ANDVSLGSVLETLRQLYAVARSTEERELLDWHLANL---EYANAGCLSDLSAT-YWDQ-DDPYEMGGDHCFLAGGNWR 360 (752)
Q Consensus 287 ~-~~~~sl~e~l~~l~~~~~~~~s~~~~~~l~~~~~~l---e~~~~~~l~~ls~~-~~~~-~~~~~~~g~~~~~~gG~~~ 360 (752)
. .+..|+.++++.+ ..++..+.++...+... .+........+... .+.. ...+. .+...++.+|++.
T Consensus 161 ~~~d~~T~~d~L~~~------~ls~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~g-~~p~~yp~gG~g~ 233 (443)
T PTZ00363 161 LNLKTMTMAQLYKKF------GLEDNTIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRYG-KSPFIYPLYGLGG 233 (443)
T ss_pred cCcccCCHHHHHHHh------CCCHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhcc-CCcceeeCCCHHH
Confidence 1 2357888887653 35666666654433322 11111111111110 0100 01111 1234677999999
Q ss_pred HHHHHHc-----CCcEEcCceEEEEEecCCc--EEEEE-CCEEEEecEEEEcC
Q 004458 361 LIKALCE-----GVPIFYEKTVNTIKYGNEG--VEVIA-GDQMFQADMVLCTV 405 (752)
Q Consensus 361 L~~aLa~-----gl~I~ln~~V~~I~~~~~g--v~V~~-~g~~~~AD~VV~Av 405 (752)
|+++|++ |..++++++|++|..++++ +.|++ +|+++.|++||+..
T Consensus 234 L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~ 286 (443)
T PTZ00363 234 LPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDP 286 (443)
T ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECc
Confidence 9999974 7799999999999987654 45665 88899999999954
No 35
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.41 E-value=3.9e-13 Score=111.36 Aligned_cols=67 Identities=37% Similarity=0.503 Sum_probs=58.6
Q ss_pred EECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCC-CccHHHHHHHHc
Q 004458 167 IVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGI-HANPLGVLARQL 237 (752)
Q Consensus 167 ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~-~~n~l~~L~~~L 237 (752)
|||||++||+||+.|++.|++|+|+|+++++||++.+...++ +.+|.|++++... ..+++..++++|
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g----~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPG----YRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETT----EEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECC----EEEeeccEEEeCCCCchHHHHHHcCC
Confidence 899999999999999999999999999999999999999875 8999999999885 445677887765
No 36
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.38 E-value=2.5e-11 Score=130.31 Aligned_cols=55 Identities=16% Similarity=0.275 Sum_probs=46.5
Q ss_pred eecC-CCHHHHHHHHHc-----CCcEEcCceEEEEEecCCcEEEEE-CCEEEEecEEEEcCC
Q 004458 352 CFLA-GGNWRLIKALCE-----GVPIFYEKTVNTIKYGNEGVEVIA-GDQMFQADMVLCTVP 406 (752)
Q Consensus 352 ~~~~-gG~~~L~~aLa~-----gl~I~ln~~V~~I~~~~~gv~V~~-~g~~~~AD~VV~AvP 406 (752)
+++. ...+.|+++|.. |++|+++++|.+|++++.+..|.+ +|+++.||.+|+|+.
T Consensus 103 ~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 103 MFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred ecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecC
Confidence 3444 788888888764 789999999999999998899887 566899999999975
No 37
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.32 E-value=4.5e-11 Score=136.06 Aligned_cols=76 Identities=28% Similarity=0.289 Sum_probs=59.4
Q ss_pred CCCCCCcEEEECCChhHHHHHHHHHhC----CCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHH
Q 004458 158 EEANEGSVIIVGAGLAGLAAAKQLMSF----GFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVL 233 (752)
Q Consensus 158 ~~~~~~~v~ViGaG~aGl~aA~~L~~~----g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L 233 (752)
+...+++|+|||||++||+||++|.+. |++|+|||+++.+||++.+..... .++.++.|.+. ... ...+..+
T Consensus 18 ~~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~--~Gy~~~~G~~~-~~~-y~~l~~l 93 (576)
T PRK13977 18 EGVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPE--KGYVARGGREM-ENH-FECLWDL 93 (576)
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCccccc--CCEEEECCCCc-cch-HHHHHHH
Confidence 334578999999999999999999995 689999999999999998765432 23788888764 333 3457777
Q ss_pred HHHc
Q 004458 234 ARQL 237 (752)
Q Consensus 234 ~~~L 237 (752)
++.+
T Consensus 94 l~~i 97 (576)
T PRK13977 94 FRSI 97 (576)
T ss_pred HHhc
Confidence 7766
No 38
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=99.31 E-value=1.6e-12 Score=113.05 Aligned_cols=82 Identities=34% Similarity=0.419 Sum_probs=70.9
Q ss_pred HHHHcCCCCCCCCHHHHhccccCccCc-cccchhHHHHHHHHHHhhhccccCCCHHHHhhhccchhHHHHHHHHHHHHHc
Q 004458 63 IAFSLGFPIDALLEEEIRAGVVGVLGG-KEQNDYIVVRNHILARWRGNVRVWLTKGQIKETVSSEYEHLMNSAYDFLLYN 141 (752)
Q Consensus 63 ~a~~~~~p~~~~~~~E~~~~~~~~~~~-~~~~~yl~irn~i~~~w~~np~~~~t~~~~~~~~~~~~~~l~~~~~~~l~~~ 141 (752)
.|++..++++.+++.| ..++|++.. ..+..||.|||+|+..|+.||..+||..++.+.+.....+++..+++||.++
T Consensus 4 ~~~~~~~~~~~l~~~E--~~~~~e~~~~~~p~~Yl~iRn~il~~w~~n~~~~lt~~~~~~~i~~~d~~~~~ri~~FL~~~ 81 (86)
T PF04433_consen 4 PAHSSWFDPDKLSEIE--KQLCPEFFIGKTPEQYLKIRNTILAEWRKNPNKYLTKTDARKLIKGIDVNKIRRIYDFLERW 81 (86)
T ss_dssp HCCHTTTTTTSS-HHH--HHHCHHCTTSCHHHHHHHHHHHHHHHHHHHTTS---HHHHHHHTTSSSHHHHHHHHHHHHHT
T ss_pred ccccCCCCcccCCHHH--HHHhHHHhccCChHHHHHHHHHHHHHHHHCCCCcccHHHHHHHccccCHHHHHHHHHHHHHc
Confidence 5678899999999999 688999644 5788999999999999999999999999999999955778899999999999
Q ss_pred ccccc
Q 004458 142 GYINF 146 (752)
Q Consensus 142 g~in~ 146 (752)
|+|||
T Consensus 82 G~INf 86 (86)
T PF04433_consen 82 GLINF 86 (86)
T ss_dssp TSSSS
T ss_pred CccCC
Confidence 99997
No 39
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.16 E-value=7.5e-11 Score=140.48 Aligned_cols=94 Identities=18% Similarity=0.225 Sum_probs=74.5
Q ss_pred hccccC-CCHHHHhhhccchhHHHHHHHHHHHHHccccccccCCCCCCCCC--------------------------CCC
Q 004458 108 GNVRVW-LTKGQIKETVSSEYEHLMNSAYDFLLYNGYINFGVAPSFTANMP--------------------------EEA 160 (752)
Q Consensus 108 ~np~~~-~t~~~~~~~~~~~~~~l~~~~~~~l~~~g~in~G~~~~~~~~~~--------------------------~~~ 160 (752)
+||.+| ......+..+..+...++++..+..+|+++...||.....+.++ ...
T Consensus 179 ~np~~W~~~~~~~l~~~~~~~~~~~t~t~a~~vr~~l~~~GF~v~~~~~~g~kr~~~~~~~~~~~~~~~~~~w~~~~~~~ 258 (662)
T PRK01747 179 KNPDMWSPNLFNALARLARPGATLATFTSAGFVRRGLQEAGFTVRKVKGFGRKREMLVGELEQTLPAPLAAPWFARPGSP 258 (662)
T ss_pred cChhhccHHHHHHHHHHhCCCCEEEEeehHHHHHHHHHHcCCeeeecCCCchhhhhhhehhccccCCCCCCCcccCCCcC
Confidence 889999 77888888888888888999999999999998888642221111 001
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCc
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRV 201 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~ 201 (752)
..++|+|||||++|+++|++|++.|++|+|+|+...+|+.+
T Consensus 259 ~~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~~ga 299 (662)
T PRK01747 259 KARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGA 299 (662)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCccccC
Confidence 12599999999999999999999999999999987676444
No 40
>PRK10015 oxidoreductase; Provisional
Probab=99.16 E-value=6.3e-09 Score=117.61 Aligned_cols=39 Identities=36% Similarity=0.529 Sum_probs=35.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGG 199 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG 199 (752)
..+||+|||||+||++||+.|++.|++|+|+|+.+.+|-
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~ 42 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGC 42 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCc
Confidence 358999999999999999999999999999999887763
No 41
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.14 E-value=2.2e-10 Score=127.75 Aligned_cols=50 Identities=26% Similarity=0.413 Sum_probs=35.9
Q ss_pred CHHHHHHHHHc-----CCcEEcCceEEEEEecCCc-EEEEE-CCEEEEecEEEEcCC
Q 004458 357 GNWRLIKALCE-----GVPIFYEKTVNTIKYGNEG-VEVIA-GDQMFQADMVLCTVP 406 (752)
Q Consensus 357 G~~~L~~aLa~-----gl~I~ln~~V~~I~~~~~g-v~V~~-~g~~~~AD~VV~AvP 406 (752)
-...+++.|.+ |++|+++++|.+|...+++ +.|.+ +++++.||.||+|+.
T Consensus 107 ~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtG 163 (409)
T PF03486_consen 107 KASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATG 163 (409)
T ss_dssp -HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE---
T ss_pred cHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecC
Confidence 45666666643 8999999999999998888 88888 999999999999974
No 42
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.14 E-value=9e-09 Score=116.39 Aligned_cols=39 Identities=44% Similarity=0.520 Sum_probs=36.4
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGR 200 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr 200 (752)
.+||+|||||++|++||+.|++.|++|+|+|+.+.+|..
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k 43 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK 43 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence 589999999999999999999999999999999888754
No 43
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.05 E-value=4.7e-08 Score=104.01 Aligned_cols=37 Identities=43% Similarity=0.591 Sum_probs=34.3
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGG 199 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG 199 (752)
+||+|||||++||++|++|++.|.+|+|+|++..++.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 5899999999999999999999999999999887653
No 44
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.01 E-value=1.2e-07 Score=106.66 Aligned_cols=37 Identities=30% Similarity=0.506 Sum_probs=34.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRP 197 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 197 (752)
..+||+|||||++||++|..|++.|++|+|+|+++..
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 4689999999999999999999999999999998864
No 45
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.99 E-value=6.9e-08 Score=108.12 Aligned_cols=43 Identities=47% Similarity=0.648 Sum_probs=39.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceE
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYT 203 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T 203 (752)
.++||+|||||+||++||+.|++.|++|+|+|+++.+|.+..+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC 44 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence 4689999999999999999999999999999999999976543
No 46
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.99 E-value=2.9e-09 Score=110.67 Aligned_cols=233 Identities=16% Similarity=0.195 Sum_probs=123.2
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHHHHHcCCCc
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLSIPL 241 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L~~~LGl~~ 241 (752)
+.|++|||||++|+..|..|++.|.+|+|+|+++.+||.+++...+..| -.+.-.|+|+|+..+.. +...+.++-- +
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tG-IlvHkYGpHIFHT~~~~-Vwdyv~~F~e-~ 77 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTG-ILVHKYGPHIFHTDNKR-VWDYVNQFTE-F 77 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCC-eEEeeccCceeecCchH-HHHHHhhhhh-h
Confidence 3689999999999999999999999999999999999999998876333 25677899999876543 4445444321 1
Q ss_pred ccccCCCceecCCCccccccchHHH-HHHHHHH--HHHHHHHHHHhc-C--CCCCCCHHHH-HHHHH-HHHHhhCCHHHH
Q 004458 242 HKVRDNCPLYKPDGAPVNKEIDSKV-EFIFNKL--LDKVMELRKIKG-G--FANDVSLGSV-LETLR-QLYAVARSTEER 313 (752)
Q Consensus 242 ~~~~~~~~~~~~~G~~~~~~~~~~~-~~~~~~l--l~~~~~~~~~~~-~--~~~~~sl~e~-l~~l~-~~~~~~~s~~~~ 313 (752)
.. .....+-..+|..++.+.+... ..+|... -+.+.++.+... + ..+..++++. +..+. .++.........
T Consensus 78 ~~-Y~hrVla~~ng~~~~lP~nl~ti~ql~G~~~~p~~a~~~i~~~~~~~~~~~~q~~ee~ais~vg~~LY~~f~kgYT~ 156 (374)
T COG0562 78 NP-YQHRVLALVNGQLYPLPFNLNTINQLFGKNFTPDEARKFIEEQAAEIDIAEPQNLEEQAISLVGRDLYEAFFKGYTE 156 (374)
T ss_pred hh-hccceeEEECCeeeeccccHHHHHHHhCccCCHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhccccH
Confidence 11 1112234467777776665322 2222211 012222222211 1 0111122211 11110 011110000000
Q ss_pred HHHHHHHHhhhhccCCCchhhhhhccccCCCccCCCCceecCCCHHHHHHHHHc--CCcEEcCceEEEEEecCCcEEEEE
Q 004458 314 ELLDWHLANLEYANAGCLSDLSATYWDQDDPYEMGGDHCFLAGGNWRLIKALCE--GVPIFYEKTVNTIKYGNEGVEVIA 391 (752)
Q Consensus 314 ~~l~~~~~~le~~~~~~l~~ls~~~~~~~~~~~~~g~~~~~~gG~~~L~~aLa~--gl~I~ln~~V~~I~~~~~gv~V~~ 391 (752)
+-+.-....+ ++..+..+... ...++.+...--.-.|++|+..+++.|.+ .++|++||.-..|.....+
T Consensus 157 KQWG~~p~eL---pasvi~RvPVr-~~~dn~YF~d~yQGlP~~GYT~~~~kMl~hp~I~V~Lntd~~~~~~~~~~----- 227 (374)
T COG0562 157 KQWGLDPKEL---PASVIKRLPVR-LNFDNRYFSDTYQGLPKDGYTAMFEKMLDHPNIDVRLNTDFFDVKDQLRA----- 227 (374)
T ss_pred HHhCCChHHC---CHHHhcccceE-EcccCcccCcccccCccccHHHHHHHHhcCCCceEEecCcHHHHhhhhcc-----
Confidence 0000000000 00111111111 11112221111224689999999999998 7899999887776554321
Q ss_pred CCEEEEecEEEEcCChhhHh
Q 004458 392 GDQMFQADMVLCTVPLGVLK 411 (752)
Q Consensus 392 ~g~~~~AD~VV~AvPl~vLk 411 (752)
..+..||.|-|++.+-
T Consensus 228 ----~~~~~VvytG~iD~~F 243 (374)
T COG0562 228 ----IPFAPVVYTGPIDAYF 243 (374)
T ss_pred ----cCCCceEEecchHhhh
Confidence 4455899999888763
No 47
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.98 E-value=1.4e-07 Score=104.73 Aligned_cols=35 Identities=34% Similarity=0.631 Sum_probs=33.0
Q ss_pred cEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCC
Q 004458 164 SVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPG 198 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 198 (752)
||+|||||++||++|+.|++.|++|+|+|+++.++
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~ 35 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEA 35 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccc
Confidence 69999999999999999999999999999998654
No 48
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.98 E-value=7.9e-09 Score=112.76 Aligned_cols=58 Identities=33% Similarity=0.359 Sum_probs=43.0
Q ss_pred eecCCC---HHHHHHHHHc-----CCcEEcCceEEEEEecCCcEE-EEECCEEEEecEEEEcCChhh
Q 004458 352 CFLAGG---NWRLIKALCE-----GVPIFYEKTVNTIKYGNEGVE-VIAGDQMFQADMVLCTVPLGV 409 (752)
Q Consensus 352 ~~~~gG---~~~L~~aLa~-----gl~I~ln~~V~~I~~~~~gv~-V~~~g~~~~AD~VV~AvPl~v 409 (752)
+.+.+| ...+.++|.+ |++|+.+++|++|..++++|+ |.++...+.||+||+|+.+..
T Consensus 137 ~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 137 FFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGEIRADRVVLAAGAWS 203 (358)
T ss_dssp EETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEEEEECEEEE--GGGH
T ss_pred cccccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccccccceeEecccccc
Confidence 344555 5566665553 889999999999999999998 888555699999999997654
No 49
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.98 E-value=2.5e-07 Score=102.62 Aligned_cols=43 Identities=21% Similarity=0.435 Sum_probs=36.8
Q ss_pred cCCcEEcCceEEEEEecCCcEEEEECCEEEEecEEEEcCChhh
Q 004458 367 EGVPIFYEKTVNTIKYGNEGVEVIAGDQMFQADMVLCTVPLGV 409 (752)
Q Consensus 367 ~gl~I~ln~~V~~I~~~~~gv~V~~~g~~~~AD~VV~AvPl~v 409 (752)
.|++|+++++|++|..+++++.|++++.++.||.||+|+....
T Consensus 162 ~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 162 AGAELLFNEPVTAIEADGDGVTVTTADGTYEAKKLVVSAGAWV 204 (376)
T ss_pred CCCEEECCCEEEEEEeeCCeEEEEeCCCEEEeeEEEEecCcch
Confidence 4889999999999999888888877555899999999997653
No 50
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.96 E-value=1.7e-08 Score=112.00 Aligned_cols=43 Identities=26% Similarity=0.423 Sum_probs=39.8
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCC--CeEEEEcCCCCCCCCceE
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFG--FKVVVLEGRSRPGGRVYT 203 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g--~~v~v~E~~~~~GGr~~T 203 (752)
.++||+|||||+.|+++|++|++.+ .+|+|+|+.+.+|-..+.
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~ 46 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSS 46 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccccccc
Confidence 4689999999999999999999998 999999999999977766
No 51
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.93 E-value=3.8e-07 Score=101.89 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=39.0
Q ss_pred HHHHHHHc-CCcEEcCceEEEEEecCCcEEEEE-CCEEEEecEEEEcCChh
Q 004458 360 RLIKALCE-GVPIFYEKTVNTIKYGNEGVEVIA-GDQMFQADMVLCTVPLG 408 (752)
Q Consensus 360 ~L~~aLa~-gl~I~ln~~V~~I~~~~~gv~V~~-~g~~~~AD~VV~AvPl~ 408 (752)
.|.+++.+ |++|+++++|++|..++++++|+. +|+++.||.||.|....
T Consensus 118 ~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~ 168 (392)
T PRK08773 118 RLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAA 168 (392)
T ss_pred HHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCC
Confidence 33444433 789999999999999888888875 67789999999998653
No 52
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.93 E-value=1.6e-07 Score=105.25 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=38.7
Q ss_pred HHHHHHHc-CCcEEcCceEEEEEecCCcEEEEE-CCEEEEecEEEEcCCh
Q 004458 360 RLIKALCE-GVPIFYEKTVNTIKYGNEGVEVIA-GDQMFQADMVLCTVPL 407 (752)
Q Consensus 360 ~L~~aLa~-gl~I~ln~~V~~I~~~~~gv~V~~-~g~~~~AD~VV~AvPl 407 (752)
.|.+.+.+ |++|+++++|++|+.+++++.|+. +|+++.||.||.|...
T Consensus 116 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~ 165 (403)
T PRK07333 116 ALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGA 165 (403)
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCC
Confidence 34444433 789999999999999888888875 7788999999999854
No 53
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.92 E-value=6.5e-07 Score=100.01 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=39.4
Q ss_pred HHHHHHHc-C-CcEEcCceEEEEEecCCcEEEE-E-CCEEEEecEEEEcCChhhH
Q 004458 360 RLIKALCE-G-VPIFYEKTVNTIKYGNEGVEVI-A-GDQMFQADMVLCTVPLGVL 410 (752)
Q Consensus 360 ~L~~aLa~-g-l~I~ln~~V~~I~~~~~gv~V~-~-~g~~~~AD~VV~AvPl~vL 410 (752)
.|.+++.+ + ++++.+++|+.++.+++.+.|+ . +|+++.||.||-|=.....
T Consensus 109 ~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~ 163 (387)
T COG0654 109 ALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSA 163 (387)
T ss_pred HHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchH
Confidence 34444433 3 7999999999999999988875 3 7889999999998764443
No 54
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.92 E-value=7e-08 Score=107.61 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=34.2
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRP 197 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 197 (752)
+.+||+|||||++||++|+.|++.|++|+|+|+.+..
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 4579999999999999999999999999999998754
No 55
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.91 E-value=1e-08 Score=114.73 Aligned_cols=41 Identities=34% Similarity=0.516 Sum_probs=37.0
Q ss_pred CCcEEEECCChhHHHHHHHHHhC--CCeEEEEcCCCCCCCCce
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSF--GFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~--g~~v~v~E~~~~~GGr~~ 202 (752)
.+||+|||||++|+++|++|++. |++|+|+|+...+|+.++
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS 44 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQT 44 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCccccccc
Confidence 37999999999999999999999 999999999887776554
No 56
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.91 E-value=3.1e-07 Score=102.50 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=39.4
Q ss_pred HHHHHHHc--CCcEEcCceEEEEEecCCcEEEEE-CCEEEEecEEEEcCChhh
Q 004458 360 RLIKALCE--GVPIFYEKTVNTIKYGNEGVEVIA-GDQMFQADMVLCTVPLGV 409 (752)
Q Consensus 360 ~L~~aLa~--gl~I~ln~~V~~I~~~~~gv~V~~-~g~~~~AD~VV~AvPl~v 409 (752)
.|.+.+.+ +++|+.+++|++|...++++.|+. ++++++||.||.|.....
T Consensus 117 ~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (391)
T PRK08020 117 ALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANS 169 (391)
T ss_pred HHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCc
Confidence 44454443 788999999999998888888865 677899999999986543
No 57
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.90 E-value=2.9e-07 Score=102.33 Aligned_cols=49 Identities=14% Similarity=0.231 Sum_probs=40.0
Q ss_pred HHHHHHHc--CCcEEcCceEEEEEecCCcEEEEE-CCEEEEecEEEEcCChh
Q 004458 360 RLIKALCE--GVPIFYEKTVNTIKYGNEGVEVIA-GDQMFQADMVLCTVPLG 408 (752)
Q Consensus 360 ~L~~aLa~--gl~I~ln~~V~~I~~~~~gv~V~~-~g~~~~AD~VV~AvPl~ 408 (752)
.|.+.+.+ |++++++++|++|..++++++|+. +|+++.||.||.|....
T Consensus 110 ~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~ 161 (382)
T TIGR01984 110 ALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGAN 161 (382)
T ss_pred HHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCC
Confidence 44455554 789999999999999888888875 67789999999999754
No 58
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.87 E-value=1.8e-08 Score=111.86 Aligned_cols=50 Identities=18% Similarity=0.054 Sum_probs=38.8
Q ss_pred HHHHHHHH-cCCcEEcCceEEEEEecCCcEEEEECCEEEEecEEEEcCChh
Q 004458 359 WRLIKALC-EGVPIFYEKTVNTIKYGNEGVEVIAGDQMFQADMVLCTVPLG 408 (752)
Q Consensus 359 ~~L~~aLa-~gl~I~ln~~V~~I~~~~~gv~V~~~g~~~~AD~VV~AvPl~ 408 (752)
..+.+++. .|++++.+++|++|..+++++.|.+++.++.||.||+|+...
T Consensus 149 ~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 149 RALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKGSYQANKLVVTAGAW 199 (380)
T ss_pred HHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCCEEEeCEEEEecCcc
Confidence 34444333 388999999999999888888887755689999999998653
No 59
>PRK09126 hypothetical protein; Provisional
Probab=98.85 E-value=9.4e-08 Score=106.68 Aligned_cols=49 Identities=12% Similarity=0.283 Sum_probs=39.2
Q ss_pred HHHHHHHc--CCcEEcCceEEEEEecCCcEEEEE-CCEEEEecEEEEcCChh
Q 004458 360 RLIKALCE--GVPIFYEKTVNTIKYGNEGVEVIA-GDQMFQADMVLCTVPLG 408 (752)
Q Consensus 360 ~L~~aLa~--gl~I~ln~~V~~I~~~~~gv~V~~-~g~~~~AD~VV~AvPl~ 408 (752)
.+.+.+.+ |++|+++++|++++..++++.|+. +|++++||.||.|-...
T Consensus 115 ~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~ 166 (392)
T PRK09126 115 AAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRF 166 (392)
T ss_pred HHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCC
Confidence 34455543 789999999999998888888764 77899999999998754
No 60
>PRK08013 oxidoreductase; Provisional
Probab=98.85 E-value=1e-06 Score=98.79 Aligned_cols=50 Identities=10% Similarity=0.188 Sum_probs=39.9
Q ss_pred HHHHHHHc--CCcEEcCceEEEEEecCCcEEEEE-CCEEEEecEEEEcCChhh
Q 004458 360 RLIKALCE--GVPIFYEKTVNTIKYGNEGVEVIA-GDQMFQADMVLCTVPLGV 409 (752)
Q Consensus 360 ~L~~aLa~--gl~I~ln~~V~~I~~~~~gv~V~~-~g~~~~AD~VV~AvPl~v 409 (752)
.|.+++.+ +++|+++++|++|+.+++++.|+. +|++++||.||-|-....
T Consensus 116 ~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S 168 (400)
T PRK08013 116 ALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANS 168 (400)
T ss_pred HHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCc
Confidence 34455544 689999999999999888888865 788999999999986443
No 61
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.85 E-value=6.4e-07 Score=100.56 Aligned_cols=50 Identities=8% Similarity=0.200 Sum_probs=39.7
Q ss_pred HHHHHHHc-CCcEEcCceEEEEEecCCcEEEEE-CCEEEEecEEEEcCChhh
Q 004458 360 RLIKALCE-GVPIFYEKTVNTIKYGNEGVEVIA-GDQMFQADMVLCTVPLGV 409 (752)
Q Consensus 360 ~L~~aLa~-gl~I~ln~~V~~I~~~~~gv~V~~-~g~~~~AD~VV~AvPl~v 409 (752)
.|.+.+.+ +++|+++++|++|+.++++|.|+. +|++++||.||.|-....
T Consensus 117 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S 168 (405)
T PRK05714 117 ALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANS 168 (405)
T ss_pred HHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence 44444444 788999999999999888888875 777899999999986433
No 62
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.84 E-value=7.1e-08 Score=110.18 Aligned_cols=39 Identities=33% Similarity=0.480 Sum_probs=34.2
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhC--CCeEEEEcCCCCCCC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSF--GFKVVVLEGRSRPGG 199 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~--g~~v~v~E~~~~~GG 199 (752)
....||+|||||++||++|++|++. |.+|+|||++. +|+
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~-~g~ 62 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL-CGA 62 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc-ccc
Confidence 3468999999999999999999998 89999999964 553
No 63
>PRK08244 hypothetical protein; Provisional
Probab=98.83 E-value=1.2e-06 Score=100.93 Aligned_cols=36 Identities=36% Similarity=0.485 Sum_probs=33.3
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRP 197 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 197 (752)
.++|+|||||++||++|..|++.|++|+|+|+++.+
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~ 37 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKET 37 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 479999999999999999999999999999998753
No 64
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.83 E-value=5e-09 Score=103.66 Aligned_cols=69 Identities=33% Similarity=0.497 Sum_probs=57.3
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCC-CccHHHHHHHHcCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGI-HANPLGVLARQLSIP 240 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~-~~n~l~~L~~~LGl~ 240 (752)
..||+|||||+|||+|||+|++.|.+|+|+|++-.+||-+| .|++.|+.. -..|...+++++|++
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w--------------~GGmlf~~iVv~~~a~~iL~e~gI~ 95 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW--------------GGGMLFNKIVVREEADEILDEFGIR 95 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc--------------ccccccceeeecchHHHHHHHhCCc
Confidence 46999999999999999999999999999999999998765 355555543 234678899999998
Q ss_pred cccc
Q 004458 241 LHKV 244 (752)
Q Consensus 241 ~~~~ 244 (752)
....
T Consensus 96 ye~~ 99 (262)
T COG1635 96 YEEE 99 (262)
T ss_pred ceec
Confidence 7654
No 65
>PRK06184 hypothetical protein; Provisional
Probab=98.82 E-value=1.1e-06 Score=101.59 Aligned_cols=37 Identities=35% Similarity=0.532 Sum_probs=34.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRP 197 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 197 (752)
+..+|+|||||++||++|..|++.|++|+|+|+++.+
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 4679999999999999999999999999999998755
No 66
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.82 E-value=7.5e-08 Score=108.24 Aligned_cols=39 Identities=23% Similarity=0.494 Sum_probs=35.2
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCc
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRV 201 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~ 201 (752)
+||+|||||++|+++|++|++.|++|+|+|+++.+|+-+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~a 40 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMET 40 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCc
Confidence 599999999999999999999999999999988666433
No 67
>PRK06834 hypothetical protein; Provisional
Probab=98.81 E-value=1.1e-06 Score=100.91 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=35.7
Q ss_pred CCcEEcCceEEEEEecCCcEEEEE-CCEEEEecEEEEcCChh
Q 004458 368 GVPIFYEKTVNTIKYGNEGVEVIA-GDQMFQADMVLCTVPLG 408 (752)
Q Consensus 368 gl~I~ln~~V~~I~~~~~gv~V~~-~g~~~~AD~VV~AvPl~ 408 (752)
|++|+++++|++|..++++|.|+. ++++++||+||.|....
T Consensus 114 gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~ 155 (488)
T PRK06834 114 GVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGR 155 (488)
T ss_pred CCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCC
Confidence 789999999999999998988875 66789999999998543
No 68
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.77 E-value=3e-07 Score=103.47 Aligned_cols=40 Identities=25% Similarity=0.448 Sum_probs=35.3
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
++|+|||||++|+++|++|++.|++|+|+|+...+|..++
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~~~aS 40 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPALETS 40 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchhhhhe
Confidence 3899999999999999999999999999999866665443
No 69
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.77 E-value=1.6e-06 Score=97.49 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=39.7
Q ss_pred HHHHHHHc--CCcEEcCceEEEEEecCCcEEEEE-CCEEEEecEEEEcCChh
Q 004458 360 RLIKALCE--GVPIFYEKTVNTIKYGNEGVEVIA-GDQMFQADMVLCTVPLG 408 (752)
Q Consensus 360 ~L~~aLa~--gl~I~ln~~V~~I~~~~~gv~V~~-~g~~~~AD~VV~AvPl~ 408 (752)
.|.+++.+ +++|+++++|++|..+++++.|+. +|++++||.||.|-...
T Consensus 116 ~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~ 167 (405)
T PRK08850 116 ALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGAN 167 (405)
T ss_pred HHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCC
Confidence 44555544 588999999999999888888875 78899999999998653
No 70
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.76 E-value=2.7e-06 Score=94.95 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=39.0
Q ss_pred HHHHHHHc--CCcEEcCceEEEEEecCCcEEEEE-CCEEEEecEEEEcCChh
Q 004458 360 RLIKALCE--GVPIFYEKTVNTIKYGNEGVEVIA-GDQMFQADMVLCTVPLG 408 (752)
Q Consensus 360 ~L~~aLa~--gl~I~ln~~V~~I~~~~~gv~V~~-~g~~~~AD~VV~AvPl~ 408 (752)
.|.+.+.+ +++|+++++|++|...++++.|+. ++.++.+|.||.|....
T Consensus 117 ~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~ 168 (395)
T PRK05732 117 RLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSH 168 (395)
T ss_pred HHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCC
Confidence 34444444 688999999999998888888876 67789999999998643
No 71
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.75 E-value=2e-06 Score=95.87 Aligned_cols=49 Identities=12% Similarity=0.252 Sum_probs=39.5
Q ss_pred HHHHHHc--CCcEEcCceEEEEEecCCcEEEEE-CCEEEEecEEEEcCChhh
Q 004458 361 LIKALCE--GVPIFYEKTVNTIKYGNEGVEVIA-GDQMFQADMVLCTVPLGV 409 (752)
Q Consensus 361 L~~aLa~--gl~I~ln~~V~~I~~~~~gv~V~~-~g~~~~AD~VV~AvPl~v 409 (752)
|.+++.+ +++|+.+++|++++.++++++|+. +|.+++||.||.|-....
T Consensus 116 L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S 167 (384)
T PRK08849 116 LWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANS 167 (384)
T ss_pred HHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCc
Confidence 3444443 578999999999999988888876 788999999999986543
No 72
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.74 E-value=2.9e-06 Score=94.50 Aligned_cols=37 Identities=35% Similarity=0.576 Sum_probs=34.2
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPG 198 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 198 (752)
.++|+|||||++||++|+.|++.|++|+|+|+++.+.
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 41 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPR 41 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCcc
Confidence 5799999999999999999999999999999987643
No 73
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.73 E-value=5.1e-06 Score=97.15 Aligned_cols=38 Identities=37% Similarity=0.517 Sum_probs=35.2
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRP 197 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 197 (752)
....+|+|||||++||++|..|++.|++|+|+|+++.+
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 45689999999999999999999999999999999855
No 74
>PRK07045 putative monooxygenase; Reviewed
Probab=98.73 E-value=2.7e-06 Score=94.91 Aligned_cols=37 Identities=41% Similarity=0.537 Sum_probs=34.3
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRP 197 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 197 (752)
..++|+|||||++||++|..|++.|++|+|+|+++.+
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 3579999999999999999999999999999998854
No 75
>PRK07190 hypothetical protein; Provisional
Probab=98.72 E-value=4.9e-06 Score=95.64 Aligned_cols=42 Identities=14% Similarity=0.149 Sum_probs=36.3
Q ss_pred CCcEEcCceEEEEEecCCcEEEEE-CCEEEEecEEEEcCChhh
Q 004458 368 GVPIFYEKTVNTIKYGNEGVEVIA-GDQMFQADMVLCTVPLGV 409 (752)
Q Consensus 368 gl~I~ln~~V~~I~~~~~gv~V~~-~g~~~~AD~VV~AvPl~v 409 (752)
|++|+++++|++|..+++++.|+. +|+++.|++||.|.....
T Consensus 123 Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 123 GAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS 165 (487)
T ss_pred CCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence 789999999999999988888754 677899999999996543
No 76
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.72 E-value=1e-07 Score=108.55 Aligned_cols=43 Identities=42% Similarity=0.579 Sum_probs=39.8
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
...++|+|||||+|||+||.+|.+.|++|+|||+++.+||.+.
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~ 50 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWV 50 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceee
Confidence 3468999999999999999999999999999999999999764
No 77
>PRK07236 hypothetical protein; Provisional
Probab=98.72 E-value=2.3e-07 Score=103.48 Aligned_cols=37 Identities=30% Similarity=0.428 Sum_probs=34.2
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR 196 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~ 196 (752)
+...+|+|||||++||++|..|++.|++|+|+|+++.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4568999999999999999999999999999999864
No 78
>PRK06185 hypothetical protein; Provisional
Probab=98.71 E-value=5.2e-06 Score=93.21 Aligned_cols=36 Identities=33% Similarity=0.439 Sum_probs=33.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR 196 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~ 196 (752)
..+||+|||||++|+++|..|++.|++|+|+|+++.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 468999999999999999999999999999999863
No 79
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.70 E-value=3.3e-06 Score=94.39 Aligned_cols=32 Identities=31% Similarity=0.525 Sum_probs=31.0
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGR 194 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~ 194 (752)
+||+|||||+||++||++|++.|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 58999999999999999999999999999997
No 80
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.69 E-value=5.2e-08 Score=98.20 Aligned_cols=38 Identities=55% Similarity=0.815 Sum_probs=31.8
Q ss_pred EEECCChhHHHHHHHHHhCCCe-EEEEcCCCCCCCCceE
Q 004458 166 IIVGAGLAGLAAAKQLMSFGFK-VVVLEGRSRPGGRVYT 203 (752)
Q Consensus 166 ~ViGaG~aGl~aA~~L~~~g~~-v~v~E~~~~~GGr~~T 203 (752)
+|||||++||++|.+|.+.|.+ |+|+|+++.+||....
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~ 39 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR 39 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE
Confidence 7999999999999999999999 9999999999998753
No 81
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.68 E-value=5.2e-08 Score=106.24 Aligned_cols=36 Identities=50% Similarity=0.648 Sum_probs=31.5
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPG 198 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 198 (752)
++|+|||||++||++|..|++.|++|+|+|+++..-
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~ 37 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPR 37 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCC
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccccc
Confidence 589999999999999999999999999999987653
No 82
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.68 E-value=5.7e-06 Score=92.55 Aligned_cols=35 Identities=49% Similarity=0.609 Sum_probs=33.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR 196 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~ 196 (752)
..+|+|||||++||++|..|++.|++|+|+|+++.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 46899999999999999999999999999999884
No 83
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.67 E-value=3.5e-07 Score=102.55 Aligned_cols=50 Identities=26% Similarity=0.347 Sum_probs=39.9
Q ss_pred HHHHHHHHHc-----CCcEEcCceEEEEEecCCcEEEEECCEEEEecEEEEcCCh
Q 004458 358 NWRLIKALCE-----GVPIFYEKTVNTIKYGNEGVEVIAGDQMFQADMVLCTVPL 407 (752)
Q Consensus 358 ~~~L~~aLa~-----gl~I~ln~~V~~I~~~~~gv~V~~~g~~~~AD~VV~AvPl 407 (752)
...+.+.|.+ +++|+++++|++|...++.+.|+++++++.||.||+|+..
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~~~~~i~ad~VIlAtG~ 158 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVETSGGEYEADKVILATGG 158 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEECCcEEEcCEEEECCCC
Confidence 4445554433 7899999999999887777777777778999999999975
No 84
>PLN02463 lycopene beta cyclase
Probab=98.65 E-value=1.8e-05 Score=89.81 Aligned_cols=37 Identities=30% Similarity=0.487 Sum_probs=33.9
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR 196 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~ 196 (752)
...+||+|||||+|||++|++|++.|++|+|+|+++.
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~ 62 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL 62 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence 4568999999999999999999999999999999763
No 85
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.65 E-value=4.3e-07 Score=104.03 Aligned_cols=39 Identities=33% Similarity=0.400 Sum_probs=34.2
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCC--CeEEEEcCCCCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFG--FKVVVLEGRSRPGG 199 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g--~~v~v~E~~~~~GG 199 (752)
..+||+|||||+.|+++|++|++.+ .+|+|+|+.+.+|.
T Consensus 44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a~ 84 (497)
T PTZ00383 44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFAL 84 (497)
T ss_pred CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchhh
Confidence 4689999999999999999999963 69999999876553
No 86
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.64 E-value=2.7e-08 Score=108.25 Aligned_cols=90 Identities=26% Similarity=0.370 Sum_probs=68.4
Q ss_pred cchhH----HHHHHHHHHhhhccccCCCHHHHhhhccchhHHHHHHHHHHHHHccccccccCCCCCCCCCCCCCCCcEEE
Q 004458 92 QNDYI----VVRNHILARWRGNVRVWLTKGQIKETVSSEYEHLMNSAYDFLLYNGYINFGVAPSFTANMPEEANEGSVII 167 (752)
Q Consensus 92 ~~~yl----~irn~i~~~w~~np~~~~t~~~~~~~~~~~~~~l~~~~~~~l~~~g~in~G~~~~~~~~~~~~~~~~~v~V 167 (752)
.|.|+ |||-+..|.|..+ ...+..+|++.+++-+.. +.| ...-...-..+|+|
T Consensus 73 ln~y~~E~aniREqcswvH~~d-------------AtekA~dllr~avakar~-------le~---le~~~~~v~~svLV 129 (622)
T COG1148 73 LNPYYLEIANIREQCSWVHMDD-------------ATEKAKDLLRMAVAKARK-------LEP---LEEIKVEVSKSVLV 129 (622)
T ss_pred eCHHHhhhhhHhhcceeeccch-------------HHHHHHHHHHHHHHHHhh-------cCC---hhhHHHhhccceEE
Confidence 56665 8999999888776 355677888887775433 001 00011134679999
Q ss_pred ECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEE
Q 004458 168 VGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQ 204 (752)
Q Consensus 168 iGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~ 204 (752)
||||+||++||..|++.|++|+++|+++.+|||+..+
T Consensus 130 IGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~ 166 (622)
T COG1148 130 IGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKL 166 (622)
T ss_pred EcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhh
Confidence 9999999999999999999999999999999997654
No 87
>PRK06126 hypothetical protein; Provisional
Probab=98.63 E-value=7.6e-06 Score=95.66 Aligned_cols=36 Identities=36% Similarity=0.526 Sum_probs=33.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR 196 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~ 196 (752)
..++|+|||||++||++|..|++.|++|+|+|+++.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 457999999999999999999999999999999763
No 88
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.63 E-value=1.6e-05 Score=88.48 Aligned_cols=196 Identities=19% Similarity=0.163 Sum_probs=103.4
Q ss_pred HHHHHHHHcCCcEEcCceEEEEEecCCcEEEEE-CCEEEEecEEEEcCChhhHhhccccCCCCCcHHHHHHHHhcCCccE
Q 004458 359 WRLIKALCEGVPIFYEKTVNTIKYGNEGVEVIA-GDQMFQADMVLCTVPLGVLKEKTIKFEPELPQRKVAAIDRLGFGLL 437 (752)
Q Consensus 359 ~~L~~aLa~gl~I~ln~~V~~I~~~~~gv~V~~-~g~~~~AD~VV~AvPl~vLk~~~i~f~P~Lp~~k~~ai~~l~~g~~ 437 (752)
..+.+.+.++..+++++.|++|+..++++.|++ +|++++|+.||-|.++..... + ...+-..
T Consensus 91 ~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~~~------~-----------~~~~Q~f 153 (374)
T PF05834_consen 91 EFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSPKA------R-----------PLGLQHF 153 (374)
T ss_pred HHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccccc------c-----------cccccee
Confidence 344555555567899999999999998777654 888999999999988443210 0 1111122
Q ss_pred EEEEEEecCcccccCCCcceeeccCCCCCceEEEE-eeccccCCCcEEEE--EeccchhhhhccCCHHHHHHHHHHHHHH
Q 004458 438 NKVAMVFPYVFWGEELDTFGCLNEQSSKRGEFFLF-YGYHTVSGGPVLNA--LVAGEAAKTFESMDPSFLLHRVLNVLRG 514 (752)
Q Consensus 438 ~kV~L~fd~~fW~~~~~~fg~l~~~~~~~~~~~~~-~~~~~~~g~~vL~~--~~~g~~a~~~~~lsdeel~~~vl~~L~~ 514 (752)
.-+.+..+++.++.+...+--...+....+..|+| .+. +...+|+- ++.. -..++.+++.++..+.|+.
T Consensus 154 ~G~~v~~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~---~~~~alvE~T~fs~-----~~~~~~~~~~~~l~~~l~~ 225 (374)
T PF05834_consen 154 YGWEVETDEPVFDPDTATLMDFRVPQSADGPSFLYVLPF---SEDRALVEETSFSP-----RPALPEEELKARLRRYLER 225 (374)
T ss_pred EEEEEeccCCCCCCCceEEEEecccCCCCCceEEEEEEc---CCCeEEEEEEEEcC-----CCCCCHHHHHHHHHHHHHH
Confidence 33344455553333322111111111101222222 122 22333432 2221 1236788888888888888
Q ss_pred hcCCCCCCCCCCeeEEEEecCCCCCCCCCCCCCcccCCCCchHHhhcccCCcEEEecccccCcCCcchHHHHHHHHHHHH
Q 004458 515 IYNPKGIDVPDPLQTICTRWGSDPFTHGSYSHVRVRSSGSDYDILAESVGSRLFFAGEATTRQYPATMHGAYLSGLREAS 594 (752)
Q Consensus 515 if~~~~~~vp~p~~~~v~rW~~dp~~~Gsys~~~pg~~~~~~~~l~~pv~~~L~fAGe~ts~~~~g~veGAl~SG~rAA~ 594 (752)
++-. ..++.......-|.+.+ . . .....+++...|+.-..-+|+| -.++....+.|.
T Consensus 226 -~g~~------~~~i~~~E~G~IPm~~~--------~---~----~~~~~~~v~~iG~agG~v~PsT-GYs~~~~~~~a~ 282 (374)
T PF05834_consen 226 -LGID------DYEILEEERGVIPMTTG--------G---F----PPRFGQRVIRIGTAGGMVKPST-GYSFARIQRQAD 282 (374)
T ss_pred -cCCC------ceeEEEeecceeecccC--------C---C----ccccCCCeeeEEccccCCCCcc-cHHHHHHHHHHH
Confidence 4421 12222223333222111 0 0 0112256888888777655544 456778888888
Q ss_pred HHHHHhhc
Q 004458 595 RILRATRV 602 (752)
Q Consensus 595 ~Il~~l~~ 602 (752)
.|.+.+..
T Consensus 283 ~ia~~l~~ 290 (374)
T PF05834_consen 283 AIADALAK 290 (374)
T ss_pred HHHHHHhh
Confidence 88887754
No 89
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.63 E-value=4.4e-07 Score=95.16 Aligned_cols=42 Identities=50% Similarity=0.633 Sum_probs=38.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
..+||+|||||++||+||+.|++.|.+|+|+|++..+||.++
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~ 61 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSW 61 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 367999999999999999999999999999999999987653
No 90
>PRK11445 putative oxidoreductase; Provisional
Probab=98.63 E-value=1.5e-05 Score=87.75 Aligned_cols=35 Identities=31% Similarity=0.430 Sum_probs=32.5
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRP 197 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 197 (752)
.+||+|||||++|+++|+.|++. ++|+|+|+++.+
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~ 35 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC 35 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence 36999999999999999999999 999999998864
No 91
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.62 E-value=9.1e-07 Score=99.40 Aligned_cols=38 Identities=47% Similarity=0.517 Sum_probs=33.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHhC-CC-eEEEEcCCCCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSF-GF-KVVVLEGRSRPGG 199 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~-g~-~v~v~E~~~~~GG 199 (752)
..+||+|||||++|+++|++|++. |. +|+|+|++. +|+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~-~~~ 68 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW-LGG 68 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc-ccC
Confidence 578999999999999999999995 95 999999975 554
No 92
>PRK07588 hypothetical protein; Provisional
Probab=98.62 E-value=3.3e-07 Score=102.42 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=38.9
Q ss_pred HHHHHcCCcEEcCceEEEEEecCCcEEEEE-CCEEEEecEEEEcCChhh
Q 004458 362 IKALCEGVPIFYEKTVNTIKYGNEGVEVIA-GDQMFQADMVLCTVPLGV 409 (752)
Q Consensus 362 ~~aLa~gl~I~ln~~V~~I~~~~~gv~V~~-~g~~~~AD~VV~AvPl~v 409 (752)
.+++..+++|+++++|++|+..+++|+|+. +|+++++|.||.|-....
T Consensus 110 ~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 110 YTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred HHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 344444689999999999999988998875 788899999999986543
No 93
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.62 E-value=2.1e-08 Score=99.99 Aligned_cols=69 Identities=39% Similarity=0.584 Sum_probs=45.9
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCC-CccHHHHHHHHcCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGI-HANPLGVLARQLSIP 240 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~-~~n~l~~L~~~LGl~ 240 (752)
.+||+|||||+|||+||++|++.|++|.|+|++..+||.++. |++.|+.. -..+-..+++++|++
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~--------------Gg~lf~~iVVq~~a~~iL~elgi~ 82 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWG--------------GGMLFNKIVVQEEADEILDELGIP 82 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS---------------CTT---EEEETTTHHHHHHHT--
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccc--------------cccccchhhhhhhHHHHHHhCCce
Confidence 579999999999999999999999999999999999988752 22222221 112445688999998
Q ss_pred cccc
Q 004458 241 LHKV 244 (752)
Q Consensus 241 ~~~~ 244 (752)
....
T Consensus 83 y~~~ 86 (230)
T PF01946_consen 83 YEEY 86 (230)
T ss_dssp -EE-
T ss_pred eEEe
Confidence 7643
No 94
>PRK06753 hypothetical protein; Provisional
Probab=98.61 E-value=3.4e-07 Score=101.50 Aligned_cols=36 Identities=36% Similarity=0.503 Sum_probs=33.4
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPG 198 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 198 (752)
++|+|||||++||++|..|++.|++|+|+|+++.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~ 36 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK 36 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccc
Confidence 479999999999999999999999999999998653
No 95
>PRK06996 hypothetical protein; Provisional
Probab=98.61 E-value=1.5e-05 Score=89.41 Aligned_cols=47 Identities=15% Similarity=0.156 Sum_probs=37.1
Q ss_pred HHHHHHHc-CCcEEcCceEEEEEecCCcEEEEE-CC---EEEEecEEEEcCC
Q 004458 360 RLIKALCE-GVPIFYEKTVNTIKYGNEGVEVIA-GD---QMFQADMVLCTVP 406 (752)
Q Consensus 360 ~L~~aLa~-gl~I~ln~~V~~I~~~~~gv~V~~-~g---~~~~AD~VV~AvP 406 (752)
.|.+++.+ +++++++++|++|+..+++|+|+. ++ ++++||.||-|-.
T Consensus 120 ~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG 171 (398)
T PRK06996 120 ALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEG 171 (398)
T ss_pred HHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCC
Confidence 44455544 678999999999999989998865 32 6899999999965
No 96
>PRK05868 hypothetical protein; Validated
Probab=98.61 E-value=4.8e-07 Score=100.51 Aligned_cols=43 Identities=16% Similarity=0.248 Sum_probs=36.5
Q ss_pred HcCCcEEcCceEEEEEecCCcEEEEE-CCEEEEecEEEEcCChh
Q 004458 366 CEGVPIFYEKTVNTIKYGNEGVEVIA-GDQMFQADMVLCTVPLG 408 (752)
Q Consensus 366 a~gl~I~ln~~V~~I~~~~~gv~V~~-~g~~~~AD~VV~AvPl~ 408 (752)
..+++|+++++|++|+.++++|+|+. +|++++||.||-|=...
T Consensus 116 ~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~ 159 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLH 159 (372)
T ss_pred cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCC
Confidence 34788999999999998888898875 78899999999997643
No 97
>PRK06847 hypothetical protein; Provisional
Probab=98.59 E-value=4.1e-07 Score=100.83 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=35.9
Q ss_pred CCcEEcCceEEEEEecCCcEEEEE-CCEEEEecEEEEcCChh
Q 004458 368 GVPIFYEKTVNTIKYGNEGVEVIA-GDQMFQADMVLCTVPLG 408 (752)
Q Consensus 368 gl~I~ln~~V~~I~~~~~gv~V~~-~g~~~~AD~VV~AvPl~ 408 (752)
|++|+++++|++|+..++++.|+. +|+++.||.||.|....
T Consensus 121 gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~ 162 (375)
T PRK06847 121 GADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLY 162 (375)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCC
Confidence 789999999999998888888765 78889999999998643
No 98
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.58 E-value=1.1e-06 Score=97.09 Aligned_cols=34 Identities=47% Similarity=0.603 Sum_probs=31.9
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR 196 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~ 196 (752)
+||+|||||++|+++|++|++.|++|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4899999999999999999999999999999763
No 99
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.56 E-value=7.1e-07 Score=101.95 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=36.7
Q ss_pred CCCcEEEECCChhHHHHHHHHHhC--CCeEEEEcCCCCCCCCce
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSF--GFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~--g~~v~v~E~~~~~GGr~~ 202 (752)
..+||+||||||+|+++|+.|++. |.+|+|+|+.+.+|-..+
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS 48 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESS 48 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcC
Confidence 457999999999999999999998 899999999777775443
No 100
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.55 E-value=3.2e-05 Score=85.94 Aligned_cols=49 Identities=6% Similarity=0.101 Sum_probs=38.0
Q ss_pred HHHHHHHc--CCcEEcCceEEEEEecCCcEEEEECCEEEEecEEEEcCChh
Q 004458 360 RLIKALCE--GVPIFYEKTVNTIKYGNEGVEVIAGDQMFQADMVLCTVPLG 408 (752)
Q Consensus 360 ~L~~aLa~--gl~I~ln~~V~~I~~~~~gv~V~~~g~~~~AD~VV~AvPl~ 408 (752)
.|.+++.+ +++++++++|++|..++++|+|+.++.+++||.||.|=...
T Consensus 109 ~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~~~~adlvIgADG~~ 159 (374)
T PRK06617 109 ILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDKQIKCNLLIICDGAN 159 (374)
T ss_pred HHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCCEEeeCEEEEeCCCC
Confidence 34444444 36799999999999988888887755589999999998544
No 101
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.54 E-value=1.1e-05 Score=91.69 Aligned_cols=33 Identities=39% Similarity=0.510 Sum_probs=31.0
Q ss_pred CcEEEECCChhHHHHHHHHHh----CCCeEEEEcCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMS----FGFKVVVLEGRS 195 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~----~g~~v~v~E~~~ 195 (752)
+||+|||||++||++|+.|++ .|++|+|+|+++
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 589999999999999999999 799999999954
No 102
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.50 E-value=5.5e-05 Score=88.89 Aligned_cols=38 Identities=34% Similarity=0.479 Sum_probs=34.0
Q ss_pred CCcEEEECCChhHHHHHHHHHhCC--CeEEEEcCCCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFG--FKVVVLEGRSRPGG 199 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g--~~v~v~E~~~~~GG 199 (752)
.+||+|||||+|||+||.++++.| .+|+|+||....||
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg 42 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS 42 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch
Confidence 579999999999999999999874 89999999876665
No 103
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.49 E-value=7.8e-07 Score=99.43 Aligned_cols=37 Identities=46% Similarity=0.629 Sum_probs=34.2
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPG 198 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 198 (752)
..+|+|||||++||++|..|++.|++|+|+|+++.++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~ 40 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG 40 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc
Confidence 4699999999999999999999999999999987554
No 104
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.49 E-value=1.1e-06 Score=100.59 Aligned_cols=40 Identities=15% Similarity=0.323 Sum_probs=35.4
Q ss_pred CcEEEECCChhHHHHHHHHHhC--CCeEEEEcCCCCCCCCce
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSF--GFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~--g~~v~v~E~~~~~GGr~~ 202 (752)
+||+||||||+|+++|++|++. |.+|+|+|+.+.+|...+
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S 42 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESS 42 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhC
Confidence 4899999999999999999997 999999999887775443
No 105
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.48 E-value=1.8e-06 Score=97.24 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=39.2
Q ss_pred HHHHHHHcC---CcEEcCceEEEEEecCCcEEEEE-CCEEEEecEEEEcCChhh
Q 004458 360 RLIKALCEG---VPIFYEKTVNTIKYGNEGVEVIA-GDQMFQADMVLCTVPLGV 409 (752)
Q Consensus 360 ~L~~aLa~g---l~I~ln~~V~~I~~~~~gv~V~~-~g~~~~AD~VV~AvPl~v 409 (752)
.|.+.|.+. ..|+++++|++|+..+++|+|+. +|.+++||.||.|-....
T Consensus 106 ~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 106 DFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred HHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccH
Confidence 445555443 35899999999999888998875 788899999999986544
No 106
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.48 E-value=4.9e-05 Score=90.14 Aligned_cols=36 Identities=36% Similarity=0.499 Sum_probs=33.0
Q ss_pred CCCcEEEECCChhHHHHHHHHHh-CCCeEEEEcCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMS-FGFKVVVLEGRSR 196 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~-~g~~v~v~E~~~~ 196 (752)
...+|+|||||++||++|..|++ .|++|+|+|+++.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 46899999999999999999999 4999999999763
No 107
>PRK12831 putative oxidoreductase; Provisional
Probab=98.47 E-value=1.7e-07 Score=107.09 Aligned_cols=98 Identities=26% Similarity=0.329 Sum_probs=67.5
Q ss_pred ccchhHHHHHHHHHH--hhhccccCCCHHHHhhhccchhHHHHHHHHHHHHHccccccccCCCCCCCCCCCCCCCcEEEE
Q 004458 91 EQNDYIVVRNHILAR--WRGNVRVWLTKGQIKETVSSEYEHLMNSAYDFLLYNGYINFGVAPSFTANMPEEANEGSVIIV 168 (752)
Q Consensus 91 ~~~~yl~irn~i~~~--w~~np~~~~t~~~~~~~~~~~~~~l~~~~~~~l~~~g~in~G~~~~~~~~~~~~~~~~~v~Vi 168 (752)
+.|+|..|+.++|.. -|++- |++....+.|... .|-+++.++...+|+. + . .+...+.++|+||
T Consensus 81 ~~np~p~~~grvC~~~~~Ce~~---C~r~~~~~~v~I~--~l~r~~~~~~~~~~~~-----~--~--~~~~~~~~~V~II 146 (464)
T PRK12831 81 KYNALPAVCGRVCPQESQCEGK---CVLGIKGEPVAIG--KLERFVADWARENGID-----L--S--ETEEKKGKKVAVI 146 (464)
T ss_pred HhCCchhhhhccCCCCCChHHH---hcCCCCCCCeehh--HHHHHHHHHHHHcCCC-----C--C--CCcCCCCCEEEEE
Confidence 346666777777632 22222 4444443444333 4678888876665541 1 1 1222457899999
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 169 GAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 169 GaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
|||++||+||++|++.|++|+|+|+.+.+||.+.
T Consensus 147 G~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 147 GSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 9999999999999999999999999999998764
No 108
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.45 E-value=5.7e-06 Score=94.77 Aligned_cols=40 Identities=35% Similarity=0.507 Sum_probs=36.0
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCC--CCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR--PGGR 200 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~--~GGr 200 (752)
...||+|||+|++||+||+++++.|.+|+|+||.+. .||.
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~ 44 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGN 44 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcc
Confidence 467999999999999999999999999999999874 5663
No 109
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.45 E-value=1.6e-06 Score=96.34 Aligned_cols=38 Identities=39% Similarity=0.549 Sum_probs=34.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPG 198 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 198 (752)
.+++|+|||||++|+++||+|++.|.+|+|+|+..-.+
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 46899999999999999999999999999999976433
No 110
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.45 E-value=0.00015 Score=83.99 Aligned_cols=40 Identities=18% Similarity=0.389 Sum_probs=35.8
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGR 200 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr 200 (752)
..+||+|||||++|+++|++|++.|.+|+|+|+++..+|-
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~Gt 44 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASAT 44 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCc
Confidence 4689999999999999999999999999999998755543
No 111
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.44 E-value=2.5e-06 Score=97.97 Aligned_cols=42 Identities=12% Similarity=0.267 Sum_probs=36.7
Q ss_pred CCCcEEEECCChhHHHHHHHHHhC--CCeEEEEcCCCCCCCCce
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSF--GFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~--g~~v~v~E~~~~~GGr~~ 202 (752)
..+||+||||||.|+++|++|++. |.+|+|+|+.+.+|+..+
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS 47 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESS 47 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcC
Confidence 457999999999999999999984 789999999887776553
No 112
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.44 E-value=4.8e-06 Score=96.27 Aligned_cols=41 Identities=37% Similarity=0.556 Sum_probs=38.2
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCc
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRV 201 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~ 201 (752)
..+||||||+|++||+||+++++.|.+|+|||+.+.+||..
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s 100 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNT 100 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence 47899999999999999999999999999999999998854
No 113
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.44 E-value=5.8e-07 Score=103.85 Aligned_cols=40 Identities=40% Similarity=0.571 Sum_probs=34.7
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
++|+|||||+|||+||..|.+.|++|++||+++.+||-.+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~ 41 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWR 41 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCe
Confidence 6899999999999999999999999999999999999774
No 114
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.43 E-value=1.6e-06 Score=97.40 Aligned_cols=42 Identities=43% Similarity=0.580 Sum_probs=39.2
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
..++|+|||||+|||+||+.|.+.|++|+|+||.+.+||...
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~ 46 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWK 46 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEe
Confidence 467999999999999999999999999999999999998654
No 115
>PLN02697 lycopene epsilon cyclase
Probab=98.43 E-value=0.00017 Score=83.42 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=32.8
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
...+||+|||||++||++|.+|++.|++|+|+|+..
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~ 141 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 141 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcc
Confidence 346899999999999999999999999999999753
No 116
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.41 E-value=6.4e-06 Score=93.56 Aligned_cols=38 Identities=42% Similarity=0.604 Sum_probs=35.8
Q ss_pred cEEEECCChhHHHHHHHHHhCC-CeEEEEcCCCCCCCCc
Q 004458 164 SVIIVGAGLAGLAAAKQLMSFG-FKVVVLEGRSRPGGRV 201 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~g-~~v~v~E~~~~~GGr~ 201 (752)
||+|||||++||+||+++++.| .+|+|+||.+..||..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s 39 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNS 39 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence 7999999999999999999999 9999999999888754
No 117
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.40 E-value=2.2e-06 Score=100.04 Aligned_cols=39 Identities=41% Similarity=0.576 Sum_probs=35.8
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPG 198 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 198 (752)
...++|+|||||++||++|..|++.|++|+|+|+++.++
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~ 46 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLY 46 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 456899999999999999999999999999999998654
No 118
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.40 E-value=0.0002 Score=85.02 Aligned_cols=39 Identities=31% Similarity=0.351 Sum_probs=35.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGG 199 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG 199 (752)
..+||+|||||+|||+||..+++.|.+|+|+|+....||
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g 45 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA 45 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence 357999999999999999999999999999999876554
No 119
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.38 E-value=2.8e-05 Score=92.08 Aligned_cols=39 Identities=26% Similarity=0.417 Sum_probs=35.0
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGG 199 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG 199 (752)
..+||+|||||+.|+++|++|++.|++|+|+|+.+-.+|
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence 358999999999999999999999999999999864444
No 120
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.36 E-value=4.8e-06 Score=93.38 Aligned_cols=36 Identities=42% Similarity=0.655 Sum_probs=33.3
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRP 197 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 197 (752)
..+|+|||||++||++|..|++.|++|+|+|+.+.+
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 368999999999999999999999999999998754
No 121
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.33 E-value=5.7e-07 Score=109.59 Aligned_cols=100 Identities=23% Similarity=0.306 Sum_probs=65.7
Q ss_pred ccchhHHHHHHHHHHhhhccccCCCHHHHhhhccchhHHHHHHHHHHHHHccccccccCCCCCCCCCCCCCCCcEEEECC
Q 004458 91 EQNDYIVVRNHILARWRGNVRVWLTKGQIKETVSSEYEHLMNSAYDFLLYNGYINFGVAPSFTANMPEEANEGSVIIVGA 170 (752)
Q Consensus 91 ~~~~yl~irn~i~~~w~~np~~~~t~~~~~~~~~~~~~~l~~~~~~~l~~~g~in~G~~~~~~~~~~~~~~~~~v~ViGa 170 (752)
+.|.|..|+.+||.. .+...|++....+.|.... |-+++.++-.. ++. +......+ ....++|+||||
T Consensus 478 ~~nPlp~icGrVC~h---~Ce~~C~R~~~d~pV~I~~--Lkr~a~d~~~~----~~~--~~~~~~~~-~~~~kkVaIIGG 545 (1012)
T TIGR03315 478 DKNPLPAITGTICDH---QCQYKCTRLDYDESVNIRE--MKKVAAEKGYD----EYK--TRWHKPQG-KSSAHKVAVIGA 545 (1012)
T ss_pred HhCChhhHhhCcCCc---chHHHhcCCCCCCCCcccH--HHHHHHhhHHH----hcC--ccCCCCCC-CCCCCcEEEECC
Confidence 446666777777743 2333366665555555443 35555553222 111 11111111 135689999999
Q ss_pred ChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 171 GLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 171 G~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
|+|||+||++|++.|++|+|+|+.+.+||.++
T Consensus 546 GPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~ 577 (1012)
T TIGR03315 546 GPAGLSAGYFLARAGHPVTVFEKKEKPGGVVK 577 (1012)
T ss_pred CHHHHHHHHHHHHCCCeEEEEecccccCceee
Confidence 99999999999999999999999999999875
No 122
>PRK07121 hypothetical protein; Validated
Probab=98.32 E-value=2.5e-05 Score=90.17 Aligned_cols=41 Identities=39% Similarity=0.600 Sum_probs=38.1
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCc
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRV 201 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~ 201 (752)
..+||+|||||++||+||+++++.|.+|+|+||.+..||..
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s 59 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGAT 59 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcc
Confidence 47899999999999999999999999999999999888754
No 123
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.32 E-value=3.8e-06 Score=94.63 Aligned_cols=36 Identities=47% Similarity=0.745 Sum_probs=33.2
Q ss_pred cEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 004458 164 SVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGG 199 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG 199 (752)
||+|||+|+|||+||..+++.|.+|+|+||.+..||
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg 36 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG 36 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence 799999999999999999999999999999999998
No 124
>PRK09897 hypothetical protein; Provisional
Probab=98.31 E-value=5.8e-06 Score=95.37 Aligned_cols=41 Identities=27% Similarity=0.488 Sum_probs=35.5
Q ss_pred CcEEEECCChhHHHHHHHHHhCC--CeEEEEcCCCCCC-CCceE
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFG--FKVVVLEGRSRPG-GRVYT 203 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g--~~v~v~E~~~~~G-Gr~~T 203 (752)
++|+|||||++|+++|.+|.+.+ .+|+|+|++..+| |.+++
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays 45 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYS 45 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeec
Confidence 58999999999999999998865 4899999999888 55543
No 125
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.28 E-value=8.1e-07 Score=109.00 Aligned_cols=105 Identities=21% Similarity=0.132 Sum_probs=64.1
Q ss_pred ccchhHHHHHHHHHHhhhccccCCCHHHHhhhccchhHHHHHHHHHHHHHccccc-cccCCCCCCCCCCCCCCCcEEEEC
Q 004458 91 EQNDYIVVRNHILARWRGNVRVWLTKGQIKETVSSEYEHLMNSAYDFLLYNGYIN-FGVAPSFTANMPEEANEGSVIIVG 169 (752)
Q Consensus 91 ~~~~yl~irn~i~~~w~~np~~~~t~~~~~~~~~~~~~~l~~~~~~~l~~~g~in-~G~~~~~~~~~~~~~~~~~v~ViG 169 (752)
+.|+|..|+.+||.. -.-|...|++. .+.| .-..+-+++.++....+... -.+.+. .... .....++|+|||
T Consensus 241 ~~np~p~~~GrVCp~-~~~CE~~C~~~--~~pV--~I~~ler~i~d~~~~~~~~~~~~~~~~-~~~~-~~~~gkkVaVIG 313 (944)
T PRK12779 241 SCNPLPNVTGRVCPQ-ELQCQGVCTHT--KRPI--EIGQLEWYLPQHEKLVNPNANERFAGR-ISPW-AAAVKPPIAVVG 313 (944)
T ss_pred HhCChhHHhcCcCCC-ccCHHHhccCC--CcCc--chhHHHHHHHHHHHhhchhhhhccccc-cccc-ccCCCCeEEEEC
Confidence 456777777777732 00111124433 1222 23455677777644333210 001100 0111 113478999999
Q ss_pred CChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 170 AGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 170 aG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
||+|||+||++|++.|++|+|||+.+++||.+.
T Consensus 314 sGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 314 SGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 999999999999999999999999999999764
No 126
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.28 E-value=2.6e-05 Score=91.14 Aligned_cols=42 Identities=31% Similarity=0.559 Sum_probs=38.7
Q ss_pred CCCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCc
Q 004458 159 EANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRV 201 (752)
Q Consensus 159 ~~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~ 201 (752)
....+||||||+| +|++||...++.|.+|+|+||.+.+||.+
T Consensus 13 ~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~ 54 (564)
T PRK12845 13 RDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGST 54 (564)
T ss_pred CCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcc
Confidence 3558999999999 99999999999999999999999999855
No 127
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.24 E-value=0.00017 Score=82.03 Aligned_cols=41 Identities=29% Similarity=0.503 Sum_probs=37.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCc
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRV 201 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~ 201 (752)
...||+||||||+|+-+|+.++..|++|+++|++|-..|-.
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTS 51 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTS 51 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCccc
Confidence 57899999999999999999999999999999999766644
No 128
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=98.23 E-value=2.5e-05 Score=87.50 Aligned_cols=234 Identities=18% Similarity=0.218 Sum_probs=125.1
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEEecC-------C----------CCceEEEeccceeEc
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQKMG-------K----------KGEFAAVDLGGSVIT 223 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~~-------g----------~g~~~~~d~Ga~~i~ 223 (752)
..+||||+|.|+.-...|-.|++.|.+|+.+|+++.-||...|+... . ....+.+|+-+..+.
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll~ 82 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLLY 82 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BEE
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhhh
Confidence 47899999999999999999999999999999999999999998743 0 123577888887776
Q ss_pred CCCccHHHHHHHHcCCCccc-cc--CCCceecCCCccccccchH-----------HHHHHHHHHHHHHHHHHHHhc----
Q 004458 224 GIHANPLGVLARQLSIPLHK-VR--DNCPLYKPDGAPVNKEIDS-----------KVEFIFNKLLDKVMELRKIKG---- 285 (752)
Q Consensus 224 ~~~~n~l~~L~~~LGl~~~~-~~--~~~~~~~~~G~~~~~~~~~-----------~~~~~~~~ll~~~~~~~~~~~---- 285 (752)
... ++..++-+-++.... +. .. .+.+.+|+....|... .-.+.+.+++..+..+.+.-.
T Consensus 83 a~g--~LV~lLi~S~V~rYLEFk~V~~-~~v~~~~~l~kVP~sr~dvf~s~~lsl~eKR~lmkFl~~v~~~~~~~~~~~~ 159 (438)
T PF00996_consen 83 ARG--PLVKLLISSGVTRYLEFKAVDG-SYVYKNGKLHKVPCSREDVFKSKLLSLFEKRRLMKFLKFVANYEEDDPSTHK 159 (438)
T ss_dssp TTS--HHHHHHHHCTGGGGSEEEEESE-EEEEETTEEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHHHGCTTBGGGST
T ss_pred ccC--HHHHHHHhCCcccceEEEEcce-eEEEeCCEEeeCCCCHHHhhcCCCccHHHHHHHHHHHHHHhhcccCCcchhh
Confidence 543 355566666653221 11 11 2223456554433221 112233344444333221100
Q ss_pred CC-CCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhh---hhccCCCchhhhhh--ccccCCCccCCCCceecCCCHH
Q 004458 286 GF-ANDVSLGSVLETLRQLYAVARSTEERELLDWHLANL---EYANAGCLSDLSAT--YWDQDDPYEMGGDHCFLAGGNW 359 (752)
Q Consensus 286 ~~-~~~~sl~e~l~~l~~~~~~~~s~~~~~~l~~~~~~l---e~~~~~~l~~ls~~--~~~~~~~~~~~g~~~~~~gG~~ 359 (752)
.. ....++.++++.+ ..++....++...++.. .+........+... +...-..|. .+..+++.-|.+
T Consensus 160 ~~~~~~~~~~e~~~~f------~L~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri~~yl~SlgryG-~sPfLyP~YG~G 232 (438)
T PF00996_consen 160 GLDPEKKTFQELLKKF------GLSENLIDFIGHAIALSLDDSYLTEPAREGLERIKLYLSSLGRYG-KSPFLYPLYGLG 232 (438)
T ss_dssp TG-TTTSBHHHHHHHT------TS-HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHHHHHHHHHCCCS-SSSEEEETT-TT
T ss_pred ccccccccHHHHHHhc------CCCHHHHHHHHHhhhhccCcccccccHHHHHHHHHHHHHHHhccC-CCCEEEEccCCc
Confidence 11 2346677776542 23444444443221111 11111111111110 100111121 235678888999
Q ss_pred HHHHHHHc-----CCcEEcCceEEEEEecCCc-E-EEEECCEEEEecEEEEc
Q 004458 360 RLIKALCE-----GVPIFYEKTVNTIKYGNEG-V-EVIAGDQMFQADMVLCT 404 (752)
Q Consensus 360 ~L~~aLa~-----gl~I~ln~~V~~I~~~~~g-v-~V~~~g~~~~AD~VV~A 404 (752)
.|++++++ |....||++|.+|..++++ + .|..+|+++.|++||+.
T Consensus 233 ELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~d 284 (438)
T PF00996_consen 233 ELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGD 284 (438)
T ss_dssp HHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEE
T ss_pred cHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEEC
Confidence 99999987 7889999999999986555 3 36679999999999964
No 129
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.23 E-value=1.7e-05 Score=92.64 Aligned_cols=36 Identities=28% Similarity=0.503 Sum_probs=33.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR 196 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~ 196 (752)
..+||+|||||++|+++|++|++.|++|+|+|+.+-
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~ 40 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDI 40 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 358999999999999999999999999999999763
No 130
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.23 E-value=1.2e-06 Score=106.32 Aligned_cols=100 Identities=26% Similarity=0.251 Sum_probs=64.1
Q ss_pred cchhHHHHHHHHHHhhhccccCCCHHHHhhhccchhHHHHHHHHHHHHHccccccccCCCCCCCCCCCCCCCcEEEECCC
Q 004458 92 QNDYIVVRNHILARWRGNVRVWLTKGQIKETVSSEYEHLMNSAYDFLLYNGYINFGVAPSFTANMPEEANEGSVIIVGAG 171 (752)
Q Consensus 92 ~~~yl~irn~i~~~w~~np~~~~t~~~~~~~~~~~~~~l~~~~~~~l~~~g~in~G~~~~~~~~~~~~~~~~~v~ViGaG 171 (752)
.|.|..|..+||..- +...|++....+.|... .|-+++.++-..... +.... .....+.++|+|||||
T Consensus 481 ~nPlP~icGrVCph~---Ce~~C~R~~~d~pV~I~--~Lkr~a~d~~~~~~~------~~~~~-~~~~~tgKkVaIIGgG 548 (1019)
T PRK09853 481 RNALPAITGHICDHQ---CQYNCTRLDYDEAVNIR--ELKKVALEKGWDEYK------QRWHK-PAGIGSRKKVAVIGAG 548 (1019)
T ss_pred hCChhhHhhCcCCch---hHHHhcCCCCCCCeecc--HHHHHHHhhHHHhcc------cccCC-CCccCCCCcEEEECCC
Confidence 455666666666532 22236665555555443 334555444222111 01001 1112457899999999
Q ss_pred hhHHHHHHHHHhCCCeEEEEcCCCCCCCCceE
Q 004458 172 LAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYT 203 (752)
Q Consensus 172 ~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T 203 (752)
+|||+||++|++.|++|+|+|+.+.+||.++.
T Consensus 549 PAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 549 PAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 99999999999999999999999999998753
No 131
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.22 E-value=2.9e-06 Score=95.84 Aligned_cols=97 Identities=27% Similarity=0.280 Sum_probs=70.6
Q ss_pred HHHHHHHHhhhccccCCCHHHH-h------------hhccchhHHHHHHHHHHHHHccccccccCCCCCCCCCCCCCCCc
Q 004458 98 VRNHILARWRGNVRVWLTKGQI-K------------ETVSSEYEHLMNSAYDFLLYNGYINFGVAPSFTANMPEEANEGS 164 (752)
Q Consensus 98 irn~i~~~w~~np~~~~t~~~~-~------------~~~~~~~~~l~~~~~~~l~~~g~in~G~~~~~~~~~~~~~~~~~ 164 (752)
+...+-.+|..|+.-..|-+-+ . +..+..+..+.+.+.+...+.|+|. ...+......+
T Consensus 54 ~~~a~~~i~~tn~~p~~~gRvcp~~~~ceg~cv~~~~~~~v~i~~le~~i~d~~~~~g~i~--------~~~~~~~tg~~ 125 (457)
T COG0493 54 DHEAIKLIHKTNNLPAITGRVCPLGNLCEGACVLGIEELPVNIGALERAIGDKADREGWIP--------GELPGSRTGKK 125 (457)
T ss_pred cHHHHHHHHHhCCCccccCccCCCCCceeeeeeeccCCCchhhhhHHHHHhhHHHHhCCCC--------CCCCCCCCCCE
Confidence 4444455666666555332221 1 1233346788999999888888862 11333345689
Q ss_pred EEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 165 VIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 165 v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
|+|||||++||+||+.|++.|++|+|+|+.+++||++.
T Consensus 126 VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~ 163 (457)
T COG0493 126 VAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLL 163 (457)
T ss_pred EEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEE
Confidence 99999999999999999999999999999999999885
No 132
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.22 E-value=1.6e-05 Score=83.76 Aligned_cols=39 Identities=41% Similarity=0.554 Sum_probs=35.1
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPG 198 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 198 (752)
.+..+|+|||||+-|++||++|+|.|.++++||+.+-+-
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph 43 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPH 43 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCc
Confidence 456799999999999999999999999999999987543
No 133
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.21 E-value=1.3e-06 Score=108.17 Aligned_cols=96 Identities=24% Similarity=0.257 Sum_probs=62.8
Q ss_pred cchhHHHHHHHHHH--hhhccccCCCHHHHhhhccchhHHHHHHHHHHHHHccccccccCCCCCCCCCCCCCCCcEEEEC
Q 004458 92 QNDYIVVRNHILAR--WRGNVRVWLTKGQIKETVSSEYEHLMNSAYDFLLYNGYINFGVAPSFTANMPEEANEGSVIIVG 169 (752)
Q Consensus 92 ~~~yl~irn~i~~~--w~~np~~~~t~~~~~~~~~~~~~~l~~~~~~~l~~~g~in~G~~~~~~~~~~~~~~~~~v~ViG 169 (752)
.|+|..|..++|.. -|++ .|++....+.|.+ ..|-+++.++....+.. + +..+ .+.++|+|||
T Consensus 373 ~np~p~~~grvCp~~~~Ce~---~C~~~~~~~pv~I--~~ler~~~d~~~~~~~~-----~---~~~~--~~~~kVaIIG 437 (1006)
T PRK12775 373 ASIFPSICGRVCPQETQCEA---QCIIAKKHESVGI--GRLERFVGDNARAKPVK-----P---PRFS--KKLGKVAICG 437 (1006)
T ss_pred hCChHHHhcCcCCCCCCHHH---hCcCCCCCCCeee--cHHHHHHHHHHHHcCCC-----C---CCCC--CCCCEEEEEC
Confidence 45555555555532 1222 1444433333333 35577777776554431 1 1111 3467999999
Q ss_pred CChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 170 AGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 170 aG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
||+|||+||++|++.|++|+|||+.+.+||.++
T Consensus 438 ~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 438 SGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ 470 (1006)
T ss_pred CCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence 999999999999999999999999999998764
No 134
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.21 E-value=1.2e-06 Score=104.99 Aligned_cols=43 Identities=21% Similarity=0.334 Sum_probs=37.9
Q ss_pred CCCCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCC
Q 004458 158 EEANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGR 200 (752)
Q Consensus 158 ~~~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr 200 (752)
...+.++|+|||||+|||+||++|++.|++|+|+|+.+..|+-
T Consensus 379 ~~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 379 KEPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 3356889999999999999999999999999999998766553
No 135
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.20 E-value=1.8e-06 Score=99.03 Aligned_cols=99 Identities=27% Similarity=0.323 Sum_probs=66.9
Q ss_pred ccchhHHHHHHHHHHhhhccccCCCHHHHhhhccchhHHHHHHHHHHHHHccccccccCCCCCCCCCCCCCCCcEEEECC
Q 004458 91 EQNDYIVVRNHILARWRGNVRVWLTKGQIKETVSSEYEHLMNSAYDFLLYNGYINFGVAPSFTANMPEEANEGSVIIVGA 170 (752)
Q Consensus 91 ~~~~yl~irn~i~~~w~~np~~~~t~~~~~~~~~~~~~~l~~~~~~~l~~~g~in~G~~~~~~~~~~~~~~~~~v~ViGa 170 (752)
+.|.|..|..+||..-|+ ..|++....+.|. -..|.+++.++....++.. +. .+.....++|+||||
T Consensus 85 ~~~p~~~~~g~vC~~~Ce---~~C~~~~~~~~v~--i~~l~r~~~~~~~~~~~~~----~~----~~~~~~~~~VvIIGa 151 (471)
T PRK12810 85 QTNNFPEFTGRVCPAPCE---GACTLNINFGPVT--IKNIERYIIDKAFEEGWVK----PD----PPVKRTGKKVAVVGS 151 (471)
T ss_pred HhCChhHHhcCcCCchhH---HhccCCCCCCCcc--HHHHHHHHHHHHHHcCCCC----CC----CCcCCCCCEEEEECc
Confidence 456677777777743322 2255544333333 3456777777766554311 11 112235679999999
Q ss_pred ChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 171 GLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 171 G~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
|++||+||+.|++.|++|+|+|+.+.+||.+.
T Consensus 152 GpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 152 GPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 99999999999999999999999999998653
No 136
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.19 E-value=1.6e-05 Score=77.21 Aligned_cols=47 Identities=26% Similarity=0.428 Sum_probs=35.8
Q ss_pred HHHHHHHcCCcE-EcCceEEEEEecCCcEEEEE-CCEEEEecEEEEcCC
Q 004458 360 RLIKALCEGVPI-FYEKTVNTIKYGNEGVEVIA-GDQMFQADMVLCTVP 406 (752)
Q Consensus 360 ~L~~aLa~gl~I-~ln~~V~~I~~~~~gv~V~~-~g~~~~AD~VV~AvP 406 (752)
.+.+.+..++.| +...+|+.|...++++.|++ +|..+.||+||+|+.
T Consensus 106 ~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~G 154 (156)
T PF13454_consen 106 RLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATG 154 (156)
T ss_pred HHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCC
Confidence 344444445554 35779999999999988755 889999999999985
No 137
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.18 E-value=1e-06 Score=103.21 Aligned_cols=97 Identities=25% Similarity=0.254 Sum_probs=70.5
Q ss_pred HHHHHHHHHhhhccccCCCHHHHhhhcc---------ch--hHHHHHHHHHHHHHccccccccCCCCCCCCCCCCCCCcE
Q 004458 97 VVRNHILARWRGNVRVWLTKGQIKETVS---------SE--YEHLMNSAYDFLLYNGYINFGVAPSFTANMPEEANEGSV 165 (752)
Q Consensus 97 ~irn~i~~~w~~np~~~~t~~~~~~~~~---------~~--~~~l~~~~~~~l~~~g~in~G~~~~~~~~~~~~~~~~~v 165 (752)
..+-.+-++-..|-.-+.|-+.|=.+.. .+ -+..-+.+.++....|+| .+.+|.....++|
T Consensus 1717 ~wk~al~~ll~tnnfpeftgrvcpapcegactlgiie~pv~iksie~aiid~af~egwm--------~p~pp~~rtg~~v 1788 (2142)
T KOG0399|consen 1717 QWKEALEQLLETNNFPEFTGRVCPAPCEGACTLGIIEPPVGIKSIECAIIDKAFEEGWM--------KPCPPAFRTGKRV 1788 (2142)
T ss_pred HHHHHHHHHHhhCCCccccCccCCCCcCcceeeecccCCccccchhhHHHHHHHHhcCC--------ccCCcccccCcEE
Confidence 3455555556666655555444322221 11 234566778888888987 4445555778999
Q ss_pred EEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCc
Q 004458 166 IIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRV 201 (752)
Q Consensus 166 ~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~ 201 (752)
+|||+|++||+||-+|-+.|+.|+|+|+.+|+||..
T Consensus 1789 aiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll 1824 (2142)
T KOG0399|consen 1789 AIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLL 1824 (2142)
T ss_pred EEEccCchhhhHHHHHhhcCcEEEEEEecCCcCcee
Confidence 999999999999999999999999999999999866
No 138
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.18 E-value=1.8e-05 Score=93.00 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=39.9
Q ss_pred HHHHHHHHcCC---cEEcCceEEEEEecCCcEEEEE-CCEEEEecEEEEcCChhh
Q 004458 359 WRLIKALCEGV---PIFYEKTVNTIKYGNEGVEVIA-GDQMFQADMVLCTVPLGV 409 (752)
Q Consensus 359 ~~L~~aLa~gl---~I~ln~~V~~I~~~~~gv~V~~-~g~~~~AD~VV~AvPl~v 409 (752)
..|.+.|.+.+ .++++++|++|+..+++|+|+. +|+++++|.||.|-....
T Consensus 194 ~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S 248 (668)
T PLN02927 194 MTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWS 248 (668)
T ss_pred HHHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCc
Confidence 35566666543 3789999999999889999875 778899999999986543
No 139
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.17 E-value=4.9e-05 Score=89.33 Aligned_cols=42 Identities=36% Similarity=0.529 Sum_probs=38.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
...||+|||||++||+||+.+++.|.+|+|+||.+..||...
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~ 49 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA 49 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence 468999999999999999999999999999999999998653
No 140
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.17 E-value=2.1e-06 Score=102.35 Aligned_cols=67 Identities=30% Similarity=0.421 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHccccccccCCCCCCCCCCCCCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 128 EHLMNSAYDFLLYNGYINFGVAPSFTANMPEEANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 128 ~~l~~~~~~~l~~~g~in~G~~~~~~~~~~~~~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
..|-+++.++....|+. +.. . +.....++|+|||||++||+||++|++.|++|+|+|+.+.+||.+.
T Consensus 301 ~~l~r~~~d~~~~~~~~-----~~~-~--~~~~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~ 367 (654)
T PRK12769 301 GNIERYISDQALAKGWR-----PDL-S--QVTKSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT 367 (654)
T ss_pred CHHHHHHHHHHHHhCCC-----CCC-c--ccccCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence 35577777776665542 111 1 1113578999999999999999999999999999999999999764
No 141
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.16 E-value=2.3e-06 Score=97.42 Aligned_cols=99 Identities=25% Similarity=0.291 Sum_probs=63.0
Q ss_pred ccchhHHHHHHHHHH--hhhccccCCCHHH----HhhhccchhHHHHHHHHHHHHHccccccccCCCCCCCCCCCCCCCc
Q 004458 91 EQNDYIVVRNHILAR--WRGNVRVWLTKGQ----IKETVSSEYEHLMNSAYDFLLYNGYINFGVAPSFTANMPEEANEGS 164 (752)
Q Consensus 91 ~~~~yl~irn~i~~~--w~~np~~~~t~~~----~~~~~~~~~~~l~~~~~~~l~~~g~in~G~~~~~~~~~~~~~~~~~ 164 (752)
+.|.|..|..++|.. -|+ ..|++.. .-+.+. -..|-+++.++....|.. +. ..+.....++
T Consensus 69 ~~~p~p~~~grvC~~~~~Ce---~~C~~~~~~~~~~~~v~--i~~l~~~~~~~~~~~~~~-----~~---~~~~~~~~~~ 135 (449)
T TIGR01316 69 TTSLLPAICGRVCPQERQCE---GQCTVGKMFKDVGKPVS--IGALERFVADWERQHGIE-----TE---PEKAPSTHKK 135 (449)
T ss_pred HhCChhHHhccCCCCccchH---hhCcCCCcCCCCCCCcc--HHHHHHHHHhHHHhcCCC-----cC---CCCCCCCCCE
Confidence 346666666666632 222 2244332 222222 234566666665544431 11 1112245789
Q ss_pred EEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 165 VIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 165 v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
|+|||||++||+||++|++.|++|+|+|+.+.+||.+.
T Consensus 136 V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 136 VAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred EEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 99999999999999999999999999999999998653
No 142
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.14 E-value=2.9e-06 Score=97.06 Aligned_cols=99 Identities=25% Similarity=0.287 Sum_probs=65.6
Q ss_pred ccchhHHHHHHHHH--HhhhccccCCCHHHHhhhccchhHHHHHHHHHHHHHccccccccCCCCCCCCCCCCCCCcEEEE
Q 004458 91 EQNDYIVVRNHILA--RWRGNVRVWLTKGQIKETVSSEYEHLMNSAYDFLLYNGYINFGVAPSFTANMPEEANEGSVIIV 168 (752)
Q Consensus 91 ~~~~yl~irn~i~~--~w~~np~~~~t~~~~~~~~~~~~~~l~~~~~~~l~~~g~in~G~~~~~~~~~~~~~~~~~v~Vi 168 (752)
+.|+|..|+.+||. .-|++- |++....+.|.. ..|.+++.++....++. +.. .+...+.++|+||
T Consensus 81 ~~np~~~~~grvC~~~~~Ce~~---C~~~~~~~~v~i--~~l~r~~~~~~~~~~~~-----~~~---~~~~~~~~~V~II 147 (467)
T TIGR01318 81 QTNTLPEICGRVCPQDRLCEGA---CTLNDEFGAVTI--GNLERYITDTALAMGWR-----PDL---SHVVPTGKRVAVI 147 (467)
T ss_pred HhCCchHhhcccCCCCCChHHh---CcCCCCCCCccH--HHHHHHHHHHHHHhCCC-----CCC---CCcCCCCCeEEEE
Confidence 34666677777763 122222 444433333333 45577777775554431 110 1112356899999
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 169 GAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 169 GaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
|||++||+||+.|++.|++|+|+|+.+.+||.++
T Consensus 148 G~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 148 GAGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 9999999999999999999999999999999764
No 143
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.13 E-value=2.6e-06 Score=101.27 Aligned_cols=67 Identities=27% Similarity=0.326 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHccccccccCCCCCCCCCCCCCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 128 EHLMNSAYDFLLYNGYINFGVAPSFTANMPEEANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 128 ~~l~~~~~~~l~~~g~in~G~~~~~~~~~~~~~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
..|-+++.++...+|+.. .. .+.....++|+|||||++||+||+.|++.|++|+|+|+.+.+||.+.
T Consensus 284 ~~l~r~~~d~~~~~~~~~-----~~---~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 284 GNLERYITDTALAMGWRP-----DV---SKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred hHHHHHHHHHHHHhCCCC-----CC---CcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 456788888877766531 11 11113578999999999999999999999999999999999998764
No 144
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.13 E-value=3.1e-05 Score=91.83 Aligned_cols=38 Identities=39% Similarity=0.575 Sum_probs=35.1
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPG 198 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 198 (752)
...||+|||||+|||+||..+++.|.+|+|+|+...+|
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR 71 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 46799999999999999999999999999999977765
No 145
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.11 E-value=8.5e-05 Score=84.24 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=34.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGR 200 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr 200 (752)
.+||+|||+|.|||+||..++ .|.+|+|+||.+..||.
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN 41 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence 579999999999999999985 79999999999877753
No 146
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.11 E-value=3e-06 Score=89.12 Aligned_cols=41 Identities=46% Similarity=0.563 Sum_probs=38.2
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCc
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRV 201 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~ 201 (752)
..+||+|||||+|||+||++|++.|++|+|+|++..+||.+
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM 64 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence 35799999999999999999999999999999999998765
No 147
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.09 E-value=5.4e-05 Score=89.08 Aligned_cols=43 Identities=37% Similarity=0.522 Sum_probs=39.4
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
...+||+|||+|++|++||+.+++.|.+|+|+|+.+.+||.+.
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 52 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTA 52 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 4578999999999999999999999999999999998888653
No 148
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.06 E-value=5.7e-06 Score=95.13 Aligned_cols=99 Identities=26% Similarity=0.347 Sum_probs=65.6
Q ss_pred ccchhHHHHHHHHHHhhhccccCCCHHHHhhhccchhHHHHHHHHHHHHHccccccccCCCCCCCCCCCCCCCcEEEECC
Q 004458 91 EQNDYIVVRNHILARWRGNVRVWLTKGQIKETVSSEYEHLMNSAYDFLLYNGYINFGVAPSFTANMPEEANEGSVIIVGA 170 (752)
Q Consensus 91 ~~~~yl~irn~i~~~w~~np~~~~t~~~~~~~~~~~~~~l~~~~~~~l~~~g~in~G~~~~~~~~~~~~~~~~~v~ViGa 170 (752)
..|.|..|..++|..-|++- |++...-+.+.. ..|-+++.++....+++. ...+.....++|+||||
T Consensus 85 ~~~p~p~~~grvC~~~Ce~~---C~~~~~~~~v~I--~~l~r~~~~~~~~~~~~~--------~~~~~~~~~~~V~IIGa 151 (485)
T TIGR01317 85 ATNNFPEFTGRVCPAPCEGA---CTLGISEDPVGI--KSIERIIIDKGFQEGWVQ--------PRPPSKRTGKKVAVVGS 151 (485)
T ss_pred hhCCchhHHhCcCChhhHHh---ccCCCCCCCcch--hHHHHHHHHHHHHcCCCC--------CCCCcCCCCCEEEEECC
Confidence 34667777777776433332 555544333333 334556555544434321 11112234579999999
Q ss_pred ChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 171 GLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 171 G~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
|++||+||.+|++.|++|+|+|+.+++||.+.
T Consensus 152 G~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 152 GPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred cHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 99999999999999999999999999998764
No 149
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.05 E-value=5.2e-06 Score=100.59 Aligned_cols=67 Identities=30% Similarity=0.387 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHccccccccCCCCCCCCCCCCCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 128 EHLMNSAYDFLLYNGYINFGVAPSFTANMPEEANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 128 ~~l~~~~~~~l~~~g~in~G~~~~~~~~~~~~~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
..+-+++.++....+.+.. +. +.....++|+|||||+|||+||++|++.|++|+|+|+.+.+||.+.
T Consensus 405 ~~l~r~~~d~~~~~~~~~~------~~--~~~~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 405 GYLERFVADYERESGNISV------PE--VAEKNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred HHHHHHHHHHHHHhCCCCC------CC--CCCCCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 3456666776544332210 11 1123577999999999999999999999999999999999998764
No 150
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.99 E-value=0.00012 Score=82.92 Aligned_cols=30 Identities=43% Similarity=0.671 Sum_probs=28.7
Q ss_pred EECCChhHHHHHHHHHhCCCeEEEEcCCCC
Q 004458 167 IVGAGLAGLAAAKQLMSFGFKVVVLEGRSR 196 (752)
Q Consensus 167 ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~ 196 (752)
|||+|++||+||.++++.|.+|+|+||.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 799999999999999999999999999874
No 151
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.99 E-value=0.0002 Score=82.58 Aligned_cols=38 Identities=37% Similarity=0.551 Sum_probs=34.5
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGR 200 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr 200 (752)
..||+|||||+|||+||..+++.|. |+|+||.+..||.
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~ 39 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGN 39 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCc
Confidence 4699999999999999999999997 9999999877764
No 152
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=97.97 E-value=0.001 Score=73.42 Aligned_cols=73 Identities=30% Similarity=0.560 Sum_probs=51.6
Q ss_pred CCCceecCCCHHHHHHHHHc--CCcEEcCceEEEE-EecCCc---EEEEE----CCEEEEecEEEEcCChhhHhh--ccc
Q 004458 348 GGDHCFLAGGNWRLIKALCE--GVPIFYEKTVNTI-KYGNEG---VEVIA----GDQMFQADMVLCTVPLGVLKE--KTI 415 (752)
Q Consensus 348 ~g~~~~~~gG~~~L~~aLa~--gl~I~ln~~V~~I-~~~~~g---v~V~~----~g~~~~AD~VV~AvPl~vLk~--~~i 415 (752)
.++.+.++||+.+|++.|.+ +..+ +|++|++| ...+++ ++|+. +...-.+|.||+|+|+..-.. ...
T Consensus 117 ~~gl~sV~GGN~qI~~~ll~~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~~snI~~~ 195 (368)
T PF07156_consen 117 TGGLWSVEGGNWQIFEGLLEASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQSFSNITFI 195 (368)
T ss_pred cCCceEecCCHHHHHHHHHHHccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCcccccCCcccc
Confidence 35678999999999999987 7889 99999999 454444 45543 223346799999999954321 123
Q ss_pred cCCCCC
Q 004458 416 KFEPEL 421 (752)
Q Consensus 416 ~f~P~L 421 (752)
.|+|+.
T Consensus 196 ~~~~~i 201 (368)
T PF07156_consen 196 NFDPPI 201 (368)
T ss_pred CCCCCC
Confidence 456554
No 153
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.97 E-value=9.4e-06 Score=92.11 Aligned_cols=49 Identities=37% Similarity=0.484 Sum_probs=44.1
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCe-EEEEcCCCCCCCCceEEecCC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFK-VVVLEGRSRPGGRVYTQKMGK 208 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~-v~v~E~~~~~GGr~~T~~~~g 208 (752)
.+.++|+|||||+|||++|++|.+.|.. ++||||++++||-.+..+.++
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~ 55 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPG 55 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCc
Confidence 4578999999999999999999999998 999999999999877766553
No 154
>PLN02661 Putative thiazole synthesis
Probab=97.95 E-value=1.7e-05 Score=86.14 Aligned_cols=42 Identities=40% Similarity=0.665 Sum_probs=37.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHhC-CCeEEEEcCCCCCCCCce
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSF-GFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~-g~~v~v~E~~~~~GGr~~ 202 (752)
...||+|||||++||+||++|++. |++|+|+|+...+||..+
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~ 133 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAW 133 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccccee
Confidence 467999999999999999999986 899999999999988554
No 155
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.94 E-value=1.2e-05 Score=94.33 Aligned_cols=98 Identities=23% Similarity=0.365 Sum_probs=63.6
Q ss_pred ccchhHHHHHHHHHHhhhccccCCCHHHHhhhccchhHHHHHHHHHHHHHccccccccCCCCCCCCCCCCCCCcEEEECC
Q 004458 91 EQNDYIVVRNHILARWRGNVRVWLTKGQIKETVSSEYEHLMNSAYDFLLYNGYINFGVAPSFTANMPEEANEGSVIIVGA 170 (752)
Q Consensus 91 ~~~~yl~irn~i~~~w~~np~~~~t~~~~~~~~~~~~~~l~~~~~~~l~~~g~in~G~~~~~~~~~~~~~~~~~v~ViGa 170 (752)
+.|.|..|..++|..-|+.- |++...-..+... .+-+++.++....++. ...+......+|+||||
T Consensus 80 ~~np~~~~~grvc~~~ce~~---C~r~~~~~~v~i~--~l~r~~~~~~~~~~~~---------~~~~~~~~g~~V~VIGa 145 (564)
T PRK12771 80 KDNPFPAVMGRVCYHPCESG---CNRGQVDDAVGIN--AVERFLGDYAIANGWK---------FPAPAPDTGKRVAVIGG 145 (564)
T ss_pred HhCCcchHhhCcCCchhHHh---ccCCCCCCCcCHH--HHHHHHHHHHHHcCCC---------CCCCCCCCCCEEEEECC
Confidence 45667777777774432222 4444333333322 3455555554443321 11112245779999999
Q ss_pred ChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 171 GLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 171 G~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
|++||+||+.|++.|++|+|+|+.+.+||.++
T Consensus 146 GpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 146 GPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 99999999999999999999999999998653
No 156
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.93 E-value=0.00017 Score=84.12 Aligned_cols=40 Identities=33% Similarity=0.517 Sum_probs=36.8
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGG 199 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG 199 (752)
....||+|||||+|||+||..+++.|.+|+|+||....||
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g 53 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDG 53 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCC
Confidence 4468999999999999999999999999999999987766
No 157
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.93 E-value=1.2e-05 Score=91.96 Aligned_cols=42 Identities=38% Similarity=0.687 Sum_probs=38.9
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCc
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRV 201 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~ 201 (752)
...++|+|||||++||+||+.|++.|++|+|+|+.+.+||..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l 179 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLL 179 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEe
Confidence 356799999999999999999999999999999999999865
No 158
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.92 E-value=0.00033 Score=78.47 Aligned_cols=71 Identities=28% Similarity=0.280 Sum_probs=50.2
Q ss_pred CCcEEEECCChhHHHHHHHHHhC----CCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHHHHH
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSF----GFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQ 236 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~----g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L~~~ 236 (752)
.+++=|||+|+|+|+||.+|-+. |-+|+|||+.+..||-+.+..... .||.+--|-+. ..+...+.+|++.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~--~GYv~RgGR~~--~~~~eclwdLls~ 76 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPE--NGYVIRGGRMM--EFHYECLWDLLSS 76 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCC--CCeeecCCccc--cchhHHHHHHHHh
Confidence 46788999999999999999986 468999999999999987654332 23444333332 2333445556554
No 159
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.92 E-value=1.3e-05 Score=91.40 Aligned_cols=43 Identities=33% Similarity=0.437 Sum_probs=39.4
Q ss_pred CCCCcEEEECCChhHHHHHHHHHh--CCCeEEEEcCCCCCCCCce
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMS--FGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~--~g~~v~v~E~~~~~GGr~~ 202 (752)
...++|+|||||+|||+||+.|++ .|++|+|||+.+.+||.++
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr 68 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVR 68 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEe
Confidence 346799999999999999999987 7999999999999999775
No 160
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.90 E-value=0.0003 Score=83.16 Aligned_cols=38 Identities=26% Similarity=0.492 Sum_probs=34.1
Q ss_pred CCCcEEEECCChhHHHHHHHHHhC--CCeEEEEcCCCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSF--GFKVVVLEGRSRPG 198 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~--g~~v~v~E~~~~~G 198 (752)
...||+|||||+|||+||..+++. |.+|+|+||.+..+
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~ 49 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKR 49 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCC
Confidence 357999999999999999999998 99999999987543
No 161
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.89 E-value=8.9e-06 Score=96.83 Aligned_cols=43 Identities=35% Similarity=0.558 Sum_probs=39.7
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
...++|+|||||++||+||+.|++.|++|+|+|+.+++||.++
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 3567999999999999999999999999999999999999764
No 162
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.89 E-value=1.2e-05 Score=92.01 Aligned_cols=42 Identities=31% Similarity=0.469 Sum_probs=39.0
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
..+||+|||||++|++||++|++.|.+|+|+|+.+.+||.+.
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~ 45 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCT 45 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccccc
Confidence 468999999999999999999999999999999889998763
No 163
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.84 E-value=1.5e-05 Score=91.35 Aligned_cols=41 Identities=39% Similarity=0.607 Sum_probs=38.2
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCc
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRV 201 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~ 201 (752)
+.+||+|||||++|++||..+++.|.+|+|+|+++.+||.+
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c 42 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTC 42 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeee
Confidence 35899999999999999999999999999999888899876
No 164
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.83 E-value=1.8e-05 Score=84.52 Aligned_cols=39 Identities=44% Similarity=0.673 Sum_probs=35.4
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
+||+|||||++||+||..|++.|++|+|+|+.+ +||++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~ 39 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLT 39 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCccee
Confidence 589999999999999999999999999999876 787653
No 165
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.83 E-value=0.00012 Score=84.92 Aligned_cols=38 Identities=29% Similarity=0.649 Sum_probs=34.5
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGR 200 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr 200 (752)
..||+|||+|+|||+||..+++ |.+|+|+||.+..||.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~ 40 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSN 40 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCC
Confidence 5799999999999999999976 9999999999877764
No 166
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.81 E-value=2.1e-05 Score=89.98 Aligned_cols=40 Identities=30% Similarity=0.524 Sum_probs=37.3
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
.+||+|||||++|++||++|++.|.+|+|+|+ +.+||.+.
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~ 40 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCL 40 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCcee
Confidence 37999999999999999999999999999999 88999764
No 167
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.80 E-value=3.2e-05 Score=86.49 Aligned_cols=35 Identities=40% Similarity=0.581 Sum_probs=33.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR 196 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~ 196 (752)
.++|+|||||++||++|..|++.|++|+|+|+++.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 46899999999999999999999999999999884
No 168
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.78 E-value=2.3e-05 Score=89.01 Aligned_cols=41 Identities=34% Similarity=0.430 Sum_probs=37.0
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCC-CCCCc
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR-PGGRV 201 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~-~GGr~ 201 (752)
+.+||+|||||++|++||..|++.|++|+|+|+.+. +||.+
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c 43 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTC 43 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceee
Confidence 468999999999999999999999999999999864 68765
No 169
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.78 E-value=3e-05 Score=87.52 Aligned_cols=44 Identities=32% Similarity=0.340 Sum_probs=39.0
Q ss_pred CCCCcEEEECCChhHHHHHHHHH-hCCCeEEEEcCCCCCCCCceE
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLM-SFGFKVVVLEGRSRPGGRVYT 203 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~-~~g~~v~v~E~~~~~GGr~~T 203 (752)
...++|+|||||+|||+||.+|. +.|++|+|+|+.+.+||.++.
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 34678999999999999999865 679999999999999998864
No 170
>PRK13984 putative oxidoreductase; Provisional
Probab=97.75 E-value=3e-05 Score=91.73 Aligned_cols=98 Identities=28% Similarity=0.352 Sum_probs=62.1
Q ss_pred chhHHHHHHHHHHhhhccccCCCHHHHhhhccchhHHHHHHHHHHHHHccccccccCCCCCCCCCCCCCCCcEEEECCCh
Q 004458 93 NDYIVVRNHILARWRGNVRVWLTKGQIKETVSSEYEHLMNSAYDFLLYNGYINFGVAPSFTANMPEEANEGSVIIVGAGL 172 (752)
Q Consensus 93 ~~yl~irn~i~~~w~~np~~~~t~~~~~~~~~~~~~~l~~~~~~~l~~~g~in~G~~~~~~~~~~~~~~~~~v~ViGaG~ 172 (752)
|.|..|..++|..-|+ ..|++...-+.+... .+.+++.+++...++.+. .. .+...+.++|+|||+|+
T Consensus 226 np~~~~~g~vC~~~Ce---~~C~~~~~~~~~~i~--~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~v~IIGaG~ 293 (604)
T PRK13984 226 NPLSMVCGRVCTHKCE---TVCSIGHRGEPIAIR--WLKRYIVDNVPVEKYSEI-----LD--DEPEKKNKKVAIVGSGP 293 (604)
T ss_pred CCccchhhCcCCchHH---HhhcccCCCCCeEeC--cHHHHHHhHHHHcCcccc-----cC--CCcccCCCeEEEECCCH
Confidence 4444555555433211 124443333344443 456777776654443210 00 11224577999999999
Q ss_pred hHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 173 AGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 173 aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
+|++||+.|++.|++|+|+|+.+.+||...
T Consensus 294 aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 294 AGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 999999999999999999999999998653
No 171
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.75 E-value=3e-05 Score=88.25 Aligned_cols=42 Identities=31% Similarity=0.479 Sum_probs=37.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC-CCCCCce
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS-RPGGRVY 202 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~-~~GGr~~ 202 (752)
+.+||+|||||++|++||.+|++.|.+|+|+|+.+ .+||.+.
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~ 44 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCI 44 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEe
Confidence 46899999999999999999999999999999976 4787653
No 172
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.74 E-value=2.9e-05 Score=88.57 Aligned_cols=40 Identities=25% Similarity=0.556 Sum_probs=36.8
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
.+||+|||||++|++||..|++.|++|+|+|+. .+||.+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~ 41 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCV 41 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-cccccee
Confidence 589999999999999999999999999999994 6898763
No 173
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.74 E-value=2.2e-05 Score=88.88 Aligned_cols=39 Identities=38% Similarity=0.510 Sum_probs=33.1
Q ss_pred cEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 164 SVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
||||||||++|++||..+++.|.+|+|+|+.+.+||...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t 39 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMAT 39 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcce
Confidence 799999999999999999999999999999999998663
No 174
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.73 E-value=2.7e-05 Score=88.68 Aligned_cols=40 Identities=33% Similarity=0.548 Sum_probs=36.9
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
++||+|||||++|++||..+++.|++|+|+|+ +.+||.+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~ 41 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCV 41 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceee
Confidence 58999999999999999999999999999998 57998664
No 175
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.73 E-value=0.0019 Score=71.23 Aligned_cols=48 Identities=21% Similarity=0.246 Sum_probs=37.9
Q ss_pred HHHHHHHc-CCcEEcCceEEEEEecCCcEE-E-EECCEEEEecEEEEcCCh
Q 004458 360 RLIKALCE-GVPIFYEKTVNTIKYGNEGVE-V-IAGDQMFQADMVLCTVPL 407 (752)
Q Consensus 360 ~L~~aLa~-gl~I~ln~~V~~I~~~~~gv~-V-~~~g~~~~AD~VV~AvPl 407 (752)
.|.+.|.+ |++|+++++|..|...++.+. | +++|.++.+|+||+|+.-
T Consensus 178 ni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 178 NIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGR 228 (486)
T ss_pred HHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCc
Confidence 34444444 789999999999999988654 3 348889999999999864
No 176
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.69 E-value=3.9e-05 Score=87.74 Aligned_cols=40 Identities=38% Similarity=0.593 Sum_probs=37.0
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCc
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRV 201 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~ 201 (752)
..+||+|||||++|++||.+|++.|.+|+|+|+ +.+||.+
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~ 41 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTC 41 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccce
Confidence 468999999999999999999999999999999 7788865
No 177
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.69 E-value=0.00055 Score=75.94 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=35.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHhC--CCeEEEEcCCCCCCCCc
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSF--GFKVVVLEGRSRPGGRV 201 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~--g~~v~v~E~~~~~GGr~ 201 (752)
+.+||++|||||.|.+.++.|++. ..++.|+|+.+.++.-.
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~ES 44 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALES 44 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhhc
Confidence 468999999999999999999986 57999999999887443
No 178
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.68 E-value=4.1e-05 Score=87.63 Aligned_cols=41 Identities=37% Similarity=0.566 Sum_probs=37.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
..+||+|||||++|++||..|++.|++|+|+|+.. +||.+.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~ 43 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCL 43 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-ccccee
Confidence 36899999999999999999999999999999976 998764
No 179
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.67 E-value=4.1e-05 Score=85.34 Aligned_cols=36 Identities=33% Similarity=0.531 Sum_probs=33.8
Q ss_pred cEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 004458 164 SVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGG 199 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG 199 (752)
||+|||||++|+++|+.|++.|++|+|+|+++.+||
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~ 36 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG 36 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC
Confidence 699999999999999999999999999999987765
No 180
>PRK06116 glutathione reductase; Validated
Probab=97.67 E-value=3.9e-05 Score=87.46 Aligned_cols=39 Identities=33% Similarity=0.688 Sum_probs=36.4
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCc
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRV 201 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~ 201 (752)
.+||+|||||++|++||..|++.|++|+|+|+. .+||.+
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c 42 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTC 42 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhh
Confidence 589999999999999999999999999999985 789866
No 181
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.67 E-value=4.4e-05 Score=85.64 Aligned_cols=36 Identities=36% Similarity=0.501 Sum_probs=33.1
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPG 198 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 198 (752)
+||+|||||++|++||+.|++.|++|+|+|++...+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA 36 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 489999999999999999999999999999986544
No 182
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.66 E-value=0.00083 Score=70.48 Aligned_cols=39 Identities=36% Similarity=0.649 Sum_probs=36.4
Q ss_pred cEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 164 SVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
.|||||+|+|||+|+..+...|-.|+++|+...+||..-
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence 699999999999999999999988999999999998753
No 183
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.66 E-value=5.5e-05 Score=86.14 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=33.6
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
...+||+|||||++|++||+.|++.|++|+|+|++.
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 356899999999999999999999999999999975
No 184
>PRK06370 mercuric reductase; Validated
Probab=97.63 E-value=5.6e-05 Score=86.53 Aligned_cols=40 Identities=33% Similarity=0.512 Sum_probs=36.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCc
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRV 201 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~ 201 (752)
..+||+|||||++|++||..|++.|++|+|+|+. .+||.+
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c 43 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTC 43 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCce
Confidence 4689999999999999999999999999999985 678765
No 185
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.63 E-value=5.5e-05 Score=86.79 Aligned_cols=41 Identities=34% Similarity=0.510 Sum_probs=38.2
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCc
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRV 201 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~ 201 (752)
.++||+|||||++|++||..|++.|.+|+|+|+.+.+||.+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c 43 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVC 43 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccc
Confidence 36899999999999999999999999999999988899865
No 186
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.63 E-value=5.5e-05 Score=88.51 Aligned_cols=40 Identities=28% Similarity=0.394 Sum_probs=36.9
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
.+||+|||||+|||+||.+|++.|++|+|+|+. .+||.+.
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~ 43 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQIT 43 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEE
Confidence 589999999999999999999999999999995 7898764
No 187
>PLN02985 squalene monooxygenase
Probab=97.63 E-value=0.00016 Score=83.78 Aligned_cols=37 Identities=43% Similarity=0.501 Sum_probs=34.2
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR 196 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~ 196 (752)
...+||+|||||++|+++|..|++.|++|+|+|+...
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 4578999999999999999999999999999999754
No 188
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.62 E-value=5.6e-05 Score=86.77 Aligned_cols=41 Identities=29% Similarity=0.518 Sum_probs=37.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
..+||+|||||++|++||..|++.|.+|+|+|+. .+||.+.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 43 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCL 43 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceE
Confidence 3689999999999999999999999999999995 7898764
No 189
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.62 E-value=0.00084 Score=77.89 Aligned_cols=33 Identities=48% Similarity=0.581 Sum_probs=30.3
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR 196 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~ 196 (752)
..||+|||+|+|||+||..++ |.+|+|+||.+.
T Consensus 9 ~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 9 TGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred cCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 579999999999999999996 569999999886
No 190
>PRK07538 hypothetical protein; Provisional
Probab=97.60 E-value=5.5e-05 Score=85.24 Aligned_cols=35 Identities=37% Similarity=0.543 Sum_probs=32.7
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRP 197 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 197 (752)
++|+|||||++||++|..|++.|++|+|+|+++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 48999999999999999999999999999998754
No 191
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.59 E-value=6.6e-05 Score=86.83 Aligned_cols=38 Identities=21% Similarity=0.405 Sum_probs=34.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPG 198 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 198 (752)
..+||+|||||++|+++|++|++.|.+|+|+|+.+-.+
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~ 42 (502)
T PRK13369 5 ETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQ 42 (502)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCC
Confidence 45899999999999999999999999999999996433
No 192
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.57 E-value=7.5e-05 Score=85.57 Aligned_cols=40 Identities=33% Similarity=0.501 Sum_probs=36.6
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
.+||+|||||++|++||.+|++.|.+|+|+|+. .+||.+.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~ 43 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCL 43 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcee
Confidence 589999999999999999999999999999984 6888763
No 193
>PRK10262 thioredoxin reductase; Provisional
Probab=97.57 E-value=6.8e-05 Score=81.51 Aligned_cols=41 Identities=27% Similarity=0.489 Sum_probs=36.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
..++|+|||||++||+||.+|++.|++|+++|+. ..||.+.
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~ 45 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLT 45 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCcee
Confidence 4689999999999999999999999999999964 6787653
No 194
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.56 E-value=7.4e-05 Score=80.51 Aligned_cols=44 Identities=41% Similarity=0.632 Sum_probs=38.6
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhC------CCeEEEEcCCCCCCCCceE
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSF------GFKVVVLEGRSRPGGRVYT 203 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~------g~~v~v~E~~~~~GGr~~T 203 (752)
....||+|||||+|||+||..|.+. ..+|+|+|+...+||++-|
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS 123 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS 123 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec
Confidence 4578999999999999999999774 3689999999999998754
No 195
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.56 E-value=7.4e-05 Score=81.24 Aligned_cols=36 Identities=53% Similarity=0.778 Sum_probs=33.3
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRP 197 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 197 (752)
+.+|+||||||+||++|..|.+.|++|+|||++..+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 468999999999999999999999999999997744
No 196
>PRK14694 putative mercuric reductase; Provisional
Probab=97.54 E-value=8.7e-05 Score=85.11 Aligned_cols=42 Identities=26% Similarity=0.399 Sum_probs=38.0
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
...+||+|||||++|++||..|++.|.+|+|+|+. .+||.+.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~ 45 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCV 45 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-cccccee
Confidence 45789999999999999999999999999999985 6898763
No 197
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.53 E-value=8.8e-05 Score=84.94 Aligned_cols=38 Identities=32% Similarity=0.504 Sum_probs=35.2
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCc
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRV 201 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~ 201 (752)
+||+|||||++|++||..|++.|.+|+|+|+.. +||.+
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c 38 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTC 38 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCe
Confidence 589999999999999999999999999999865 88765
No 198
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=9.4e-05 Score=79.57 Aligned_cols=41 Identities=46% Similarity=0.716 Sum_probs=33.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCe-EEEEcCCCCCCCCce
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFK-VVVLEGRSRPGGRVY 202 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~-v~v~E~~~~~GGr~~ 202 (752)
+.+||+|||||++||+||.+++++|.+ ++|+|+ ..+||...
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~~ 43 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQLT 43 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCccc
Confidence 468999999999999999999999999 555555 56776554
No 199
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.49 E-value=0.00011 Score=85.89 Aligned_cols=40 Identities=45% Similarity=0.756 Sum_probs=37.4
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC--CCCCCc
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS--RPGGRV 201 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~--~~GGr~ 201 (752)
..||+|||+|+|||+||..+++.|.+|+|+||.+ .+||..
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s 45 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQA 45 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCce
Confidence 5799999999999999999999999999999999 788854
No 200
>PTZ00058 glutathione reductase; Provisional
Probab=97.49 E-value=0.00014 Score=84.80 Aligned_cols=42 Identities=29% Similarity=0.385 Sum_probs=38.1
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
..++||+|||||++|++||..+++.|.+|+|+|+. .+||.|-
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCl 87 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCV 87 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccccc
Confidence 35789999999999999999999999999999985 7998763
No 201
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.48 E-value=0.00012 Score=91.25 Aligned_cols=43 Identities=35% Similarity=0.590 Sum_probs=40.2
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceE
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYT 203 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T 203 (752)
..++|+|||||+|||+||.+|++.|++|+|+|+.+++||.++.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 4689999999999999999999999999999999999998864
No 202
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.48 E-value=0.00011 Score=85.14 Aligned_cols=40 Identities=30% Similarity=0.531 Sum_probs=36.8
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCc
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRV 201 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~ 201 (752)
...||+|||+| +||+||+++++.|.+|+|+|+.+..||..
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT 45 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence 46899999999 99999999999999999999999888743
No 203
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.46 E-value=0.00013 Score=81.34 Aligned_cols=37 Identities=41% Similarity=0.413 Sum_probs=34.0
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPG 198 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 198 (752)
..+|+|||||++|+.||++|++.|++|+|+|+++...
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence 4689999999999999999999999999999987654
No 204
>PRK14727 putative mercuric reductase; Provisional
Probab=97.45 E-value=0.00013 Score=83.82 Aligned_cols=43 Identities=33% Similarity=0.443 Sum_probs=39.5
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
..++||+|||||++|++||..|++.|.+|+|+|+.+.+||.+.
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~ 56 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCV 56 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEec
Confidence 4568999999999999999999999999999999888998764
No 205
>PRK13748 putative mercuric reductase; Provisional
Probab=97.44 E-value=0.00012 Score=85.82 Aligned_cols=41 Identities=29% Similarity=0.407 Sum_probs=37.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
..+||+|||||++|++||..|++.|.+|+|+|+. .+||-+.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~ 137 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCV 137 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecc
Confidence 3689999999999999999999999999999996 8898663
No 206
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.40 E-value=0.00016 Score=85.27 Aligned_cols=40 Identities=33% Similarity=0.444 Sum_probs=36.1
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGR 200 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr 200 (752)
++.||+|||+|+|||+||..+++.|.+|+|+||....||.
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~ 41 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH 41 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 3569999999999999999999999999999999876653
No 207
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.40 E-value=0.00016 Score=80.26 Aligned_cols=37 Identities=41% Similarity=0.588 Sum_probs=34.2
Q ss_pred cEEEECCChhHHHHHHHHHhC--CCeEEEEcCCCCCCCC
Q 004458 164 SVIIVGAGLAGLAAAKQLMSF--GFKVVVLEGRSRPGGR 200 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~--g~~v~v~E~~~~~GGr 200 (752)
||+|||||+|||++|+.|++. |++|+|+|+.+.+||.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 799999999999999999987 9999999999877763
No 208
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.38 E-value=0.00017 Score=83.77 Aligned_cols=41 Identities=34% Similarity=0.471 Sum_probs=36.2
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
...+||+|||||++||+||.+|++.|++|+|+|. ++||++.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~ 249 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVL 249 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeee
Confidence 3468999999999999999999999999999976 4888663
No 209
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.37 E-value=0.00019 Score=82.49 Aligned_cols=32 Identities=34% Similarity=0.593 Sum_probs=31.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEG 193 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~ 193 (752)
.+||+|||||++|++||.++++.|.+|+|+|+
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 58999999999999999999999999999998
No 210
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.37 E-value=0.00019 Score=83.39 Aligned_cols=40 Identities=35% Similarity=0.432 Sum_probs=35.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCC-CCCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGR-SRPGGR 200 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~-~~~GGr 200 (752)
..+||+|||||+||+.||+.+++.|.+|+|+|++ +.+|+.
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m 43 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM 43 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence 4689999999999999999999999999999997 467653
No 211
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.37 E-value=0.00018 Score=84.60 Aligned_cols=40 Identities=33% Similarity=0.519 Sum_probs=37.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGR 200 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr 200 (752)
...||+|||+|++||+||..+++.|.+|+||||.+..||.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 3689999999999999999999999999999999988874
No 212
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.37 E-value=0.00019 Score=83.39 Aligned_cols=40 Identities=35% Similarity=0.510 Sum_probs=35.9
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCc
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRV 201 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~ 201 (752)
...+||+|||||++||+||.+|++.|++|+|+|. ++||.+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~ 249 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQV 249 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCcc
Confidence 4568999999999999999999999999999974 588865
No 213
>PRK12839 hypothetical protein; Provisional
Probab=97.36 E-value=0.00021 Score=83.77 Aligned_cols=43 Identities=37% Similarity=0.462 Sum_probs=39.5
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
....||+|||+|++||+||+.|++.|.+|+|+|+...+||.+.
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 48 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA 48 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 4478999999999999999999999999999999999998753
No 214
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.36 E-value=0.00018 Score=83.13 Aligned_cols=32 Identities=31% Similarity=0.530 Sum_probs=30.9
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEG 193 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~ 193 (752)
.+||+|||||++|++||.+|++.|.+|+|+|+
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~ 36 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDY 36 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 58999999999999999999999999999997
No 215
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.36 E-value=0.00085 Score=76.54 Aligned_cols=58 Identities=14% Similarity=0.051 Sum_probs=41.1
Q ss_pred eecCCCHHHHHHHHHc-CCcEEcCceEEEEEecCCc-EEEEECCEEEEecEEEEcCChhh
Q 004458 352 CFLAGGNWRLIKALCE-GVPIFYEKTVNTIKYGNEG-VEVIAGDQMFQADMVLCTVPLGV 409 (752)
Q Consensus 352 ~~~~gG~~~L~~aLa~-gl~I~ln~~V~~I~~~~~g-v~V~~~g~~~~AD~VV~AvPl~v 409 (752)
+-+.+-.+.+..+-.+ |..|..||+|++|....++ +-|.+.-..+++.+||-|+...+
T Consensus 184 ~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 184 MDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGSIETECVVNAAGVWA 243 (856)
T ss_pred cCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcceecceEEechhHHH
Confidence 3343334444444333 8899999999999887665 55777666799999999987554
No 216
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.35 E-value=0.0002 Score=83.83 Aligned_cols=41 Identities=27% Similarity=0.505 Sum_probs=37.8
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCc
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRV 201 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~ 201 (752)
..+||+|||+|++||+||+.+++.|.+|+|+|+.+..||.+
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST 45 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 36899999999999999999999999999999998888853
No 217
>PTZ00367 squalene epoxidase; Provisional
Probab=97.33 E-value=0.00024 Score=82.98 Aligned_cols=35 Identities=43% Similarity=0.492 Sum_probs=33.0
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
..+||+|||||++|+++|+.|++.|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 46899999999999999999999999999999975
No 218
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.31 E-value=0.00021 Score=79.92 Aligned_cols=36 Identities=39% Similarity=0.478 Sum_probs=33.9
Q ss_pred cEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 004458 164 SVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGG 199 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG 199 (752)
+|+|||||++|+.||++|++.|++|+|+|+++.+|-
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 799999999999999999999999999999887764
No 219
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.31 E-value=0.00018 Score=81.94 Aligned_cols=58 Identities=33% Similarity=0.476 Sum_probs=37.8
Q ss_pred cEEEECCChhHHHHHHHHHhCC---CeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHHHHHcCCC
Q 004458 164 SVIIVGAGLAGLAAAKQLMSFG---FKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLSIP 240 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~g---~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L~~~LGl~ 240 (752)
||+|||||+||..+|..|++.+ ++|+|+|+.+. + .+..|-..+ ..+..+++.||+.
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~-~---------------~~~vGe~~~-----p~~~~~~~~lgi~ 59 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDI-P---------------RIGVGESTL-----PSLRPFLRRLGID 59 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-------------------SSEEE-------THHHHCHHHHT--
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCC-C---------------CCCccccch-----HHHHHHHHHcCCC
Confidence 6999999999999999999998 89999999752 2 122333322 2355678889987
Q ss_pred cc
Q 004458 241 LH 242 (752)
Q Consensus 241 ~~ 242 (752)
..
T Consensus 60 e~ 61 (454)
T PF04820_consen 60 EA 61 (454)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 220
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.29 E-value=0.00028 Score=70.63 Aligned_cols=33 Identities=42% Similarity=0.643 Sum_probs=30.6
Q ss_pred cEEEECCChhHHHHHHHHHhCCCeEEEEcCCCC
Q 004458 164 SVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR 196 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~ 196 (752)
||+|||||++|++||.+|++.|.+|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 699999999999999999999999999987653
No 221
>PLN02507 glutathione reductase
Probab=97.28 E-value=0.00026 Score=81.73 Aligned_cols=33 Identities=33% Similarity=0.464 Sum_probs=31.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEG 193 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~ 193 (752)
..+||+|||||++|++||..+++.|.+|+|+|+
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 468999999999999999999999999999996
No 222
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.27 E-value=0.00043 Score=59.05 Aligned_cols=35 Identities=29% Similarity=0.552 Sum_probs=33.3
Q ss_pred cEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCC
Q 004458 164 SVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPG 198 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 198 (752)
+|+|||||+.|+-+|..|++.|.+|+|+++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 58999999999999999999999999999999876
No 223
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.25 E-value=0.00041 Score=76.48 Aligned_cols=42 Identities=43% Similarity=0.656 Sum_probs=38.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
..++|+|||||++|++||..|++.|++|+|+|+.+.+||.+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 456999999999999999999999999999999999998764
No 224
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.24 E-value=0.00029 Score=82.80 Aligned_cols=37 Identities=38% Similarity=0.516 Sum_probs=34.3
Q ss_pred cEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCC
Q 004458 164 SVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGR 200 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr 200 (752)
||+|||||+|||+||..+++.|.+|+|+||....||.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~ 37 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSH 37 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCc
Confidence 7999999999999999999999999999998876664
No 225
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.22 E-value=0.00032 Score=82.34 Aligned_cols=39 Identities=36% Similarity=0.547 Sum_probs=35.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGG 199 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG 199 (752)
...||+|||||+|||+||..+++.|.+|+|+||....||
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g 42 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS 42 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 357999999999999999999999999999999876665
No 226
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.21 E-value=0.00033 Score=79.24 Aligned_cols=42 Identities=38% Similarity=0.608 Sum_probs=38.8
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
..+||+|||||++|.+||..+++.|.+|.++|+...+||-|-
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCl 44 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCL 44 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEE
Confidence 479999999999999999999999999999999888998663
No 227
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.21 E-value=0.00036 Score=81.74 Aligned_cols=41 Identities=37% Similarity=0.540 Sum_probs=37.7
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCc
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRV 201 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~ 201 (752)
...||+|||+|++|++||..+++.|.+|+|+|+.+.+||.+
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~ 46 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGST 46 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccc
Confidence 36799999999999999999999999999999999888754
No 228
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.20 E-value=0.00034 Score=82.99 Aligned_cols=40 Identities=30% Similarity=0.381 Sum_probs=36.1
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGR 200 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr 200 (752)
...||+|||||+|||+||..+++.|.+|+|+||....||.
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~ 88 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSH 88 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCc
Confidence 3579999999999999999999999999999998866653
No 229
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.20 E-value=0.00036 Score=82.23 Aligned_cols=40 Identities=35% Similarity=0.416 Sum_probs=36.1
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGR 200 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr 200 (752)
..+||+|||||+|||+||..+++.|.+|+|+||....||.
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~ 50 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSH 50 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCC
Confidence 4679999999999999999999999999999998766653
No 230
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.20 E-value=0.00035 Score=82.30 Aligned_cols=40 Identities=28% Similarity=0.324 Sum_probs=36.1
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGR 200 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr 200 (752)
...||+|||||+|||+||..+++.|.+|+|+||....||.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~ 45 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH 45 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 3579999999999999999999999999999998776663
No 231
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.18 E-value=0.00036 Score=82.57 Aligned_cols=40 Identities=30% Similarity=0.430 Sum_probs=36.3
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGR 200 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr 200 (752)
..+||+|||||+|||+||..+++.|.+|+|+||....||.
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~ 67 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSH 67 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCC
Confidence 4679999999999999999999999999999998876653
No 232
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.16 E-value=0.00043 Score=79.37 Aligned_cols=33 Identities=45% Similarity=0.560 Sum_probs=31.6
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
+||+|||||+|||+||..+++.|.+|+|+|+..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 699999999999999999999999999999975
No 233
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.15 E-value=0.00045 Score=79.52 Aligned_cols=41 Identities=24% Similarity=0.437 Sum_probs=36.2
Q ss_pred CCCcEEEECCChhHHHHHHHHHhC-CCeEEEEcCC--------CCCCCCc
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSF-GFKVVVLEGR--------SRPGGRV 201 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~-g~~v~v~E~~--------~~~GGr~ 201 (752)
+.+||+|||||++|++||..+++. |.+|.|+|+. +.+||-|
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtC 51 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTC 51 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCee
Confidence 468999999999999999999997 9999999984 4678755
No 234
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.14 E-value=0.00017 Score=71.28 Aligned_cols=67 Identities=34% Similarity=0.673 Sum_probs=51.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhC--CCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCC-CccHHHHHHHHcC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSF--GFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGI-HANPLGVLARQLS 238 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~--g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~-~~n~l~~L~~~LG 238 (752)
..||+|||||-+||+|||+.++. ..+|.|+|++-.+||-+| +|++.|... -..|-..+++++|
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW--------------LGGQLFSAMvvRKPAhLFL~Eig 141 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW--------------LGGQLFSAMVVRKPAHLFLQEIG 141 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc--------------ccchhhhhhhhcChHHHHHHHhC
Confidence 45999999999999999999865 579999999999998665 344444322 2345566788999
Q ss_pred CCcc
Q 004458 239 IPLH 242 (752)
Q Consensus 239 l~~~ 242 (752)
++.+
T Consensus 142 vpYe 145 (328)
T KOG2960|consen 142 VPYE 145 (328)
T ss_pred CCcc
Confidence 9844
No 235
>PLN02546 glutathione reductase
Probab=97.14 E-value=0.00047 Score=80.50 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=31.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEG 193 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~ 193 (752)
.++||+|||||++|+.||..+++.|.+|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 468999999999999999999999999999996
No 236
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.14 E-value=0.00041 Score=81.10 Aligned_cols=40 Identities=28% Similarity=0.316 Sum_probs=35.4
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGR 200 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr 200 (752)
...+||+|||+|+|||+||..++ .|.+|+|+||.+..||.
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~ 46 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSA 46 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCc
Confidence 34689999999999999999996 59999999999887764
No 237
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.12 E-value=0.00044 Score=81.68 Aligned_cols=39 Identities=28% Similarity=0.366 Sum_probs=35.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGG 199 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG 199 (752)
...||+|||||+|||+||..+++.|.+|+|+||....||
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g 49 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRS 49 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCc
Confidence 467999999999999999999999999999999876555
No 238
>PLN02815 L-aspartate oxidase
Probab=97.11 E-value=0.00044 Score=81.30 Aligned_cols=39 Identities=21% Similarity=0.436 Sum_probs=35.7
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGR 200 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr 200 (752)
...||+|||+|+|||+||..+++.| +|+|+||....||.
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~ 66 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN 66 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence 4579999999999999999999999 99999999987763
No 239
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.09 E-value=0.00048 Score=82.07 Aligned_cols=38 Identities=29% Similarity=0.397 Sum_probs=35.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGG 199 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG 199 (752)
..||+|||||+|||+||..+++.|.+|+|+|+.+..+|
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s 42 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRS 42 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCc
Confidence 57999999999999999999999999999999876554
No 240
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.09 E-value=0.0005 Score=80.95 Aligned_cols=39 Identities=33% Similarity=0.405 Sum_probs=35.5
Q ss_pred CCcEEEECCChhHHHHHHHHHhCC---CeEEEEcCCCCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFG---FKVVVLEGRSRPGGR 200 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g---~~v~v~E~~~~~GGr 200 (752)
..||+|||||+|||+||..+++.| .+|+|+||....||.
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~ 46 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSH 46 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCC
Confidence 579999999999999999999998 899999999876663
No 241
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.05 E-value=0.00073 Score=85.60 Aligned_cols=41 Identities=41% Similarity=0.617 Sum_probs=38.2
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCc
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRV 201 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~ 201 (752)
...||+|||+|.|||+||..+++.|.+|+|+||.+..||..
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s 448 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNS 448 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCch
Confidence 46899999999999999999999999999999999999854
No 242
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.03 E-value=0.00097 Score=78.52 Aligned_cols=43 Identities=37% Similarity=0.495 Sum_probs=39.2
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
...+||+|||+|.+|++||..+++.|.+|+|+|+.+.+||.+.
T Consensus 14 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 14 DAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA 56 (578)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence 3468999999999999999999999999999999999998654
No 243
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.03 E-value=0.00065 Score=77.74 Aligned_cols=37 Identities=27% Similarity=0.482 Sum_probs=34.1
Q ss_pred cEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCc
Q 004458 164 SVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRV 201 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~ 201 (752)
+|+|||||++|++||..|++.|.+|+|+|+. .+||.|
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c 38 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTC 38 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccC
Confidence 8999999999999999999999999999986 477765
No 244
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.02 E-value=0.00067 Score=78.45 Aligned_cols=37 Identities=27% Similarity=0.301 Sum_probs=35.4
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGG 199 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG 199 (752)
+||+|||+|++|+++|+.|++.|++|+|+|+....||
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 5899999999999999999999999999999998886
No 245
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.00 E-value=0.00054 Score=73.40 Aligned_cols=36 Identities=42% Similarity=0.484 Sum_probs=30.7
Q ss_pred CcEEEECCChhHHHHHHHHHhCC-CeEEEEcCCCCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFG-FKVVVLEGRSRPG 198 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g-~~v~v~E~~~~~G 198 (752)
+||||||||.+|..+|.+|++.| .+|+|||+.+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence 58999999999999999999998 6999999977544
No 246
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.00 E-value=0.00065 Score=82.56 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=31.8
Q ss_pred CcEEEECCChhHHHHHHHHHhC--CCeEEEEcCCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSF--GFKVVVLEGRSR 196 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~--g~~v~v~E~~~~ 196 (752)
++|+|||||++||+||..|++. |++|+|+|+++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 4799999999999999999998 899999999875
No 247
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.99 E-value=0.00062 Score=73.07 Aligned_cols=44 Identities=32% Similarity=0.376 Sum_probs=38.9
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhC--CCeEEEEcCCCCCCCCceE
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSF--GFKVVVLEGRSRPGGRVYT 203 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~--g~~v~v~E~~~~~GGr~~T 203 (752)
...++|+|||+|+||+.+|+.|.++ +++|.|+|+.+.++|.++.
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy 63 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY 63 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee
Confidence 3456999999999999999999984 6899999999999998763
No 248
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.97 E-value=0.00097 Score=70.23 Aligned_cols=41 Identities=44% Similarity=0.697 Sum_probs=35.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC--CCCCCc
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS--RPGGRV 201 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~--~~GGr~ 201 (752)
...+|||||||++||.||.+|+.+|.+|+|+|... .+||.+
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 46799999999999999999999999999997754 567654
No 249
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=96.97 E-value=0.00056 Score=75.49 Aligned_cols=39 Identities=33% Similarity=0.462 Sum_probs=30.5
Q ss_pred cEEEECCChhHHHHHHHHHhCCCeEEEE-cCCCCCCCCce
Q 004458 164 SVIIVGAGLAGLAAAKQLMSFGFKVVVL-EGRSRPGGRVY 202 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~g~~v~v~-E~~~~~GGr~~ 202 (752)
||+|||||.||..||+++++.|.+|+++ +..+.+|....
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~C 40 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSC 40 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccc
Confidence 7999999999999999999999999999 66667765443
No 250
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=96.95 E-value=0.00073 Score=79.57 Aligned_cols=38 Identities=26% Similarity=0.331 Sum_probs=34.3
Q ss_pred CCcEEEECCChhHHHHHHHHHhC--CCeEEEEcCCCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSF--GFKVVVLEGRSRPGG 199 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~--g~~v~v~E~~~~~GG 199 (752)
.+||+|||||+|||+||..+++. |.+|+|+||....||
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 57999999999999999999987 479999999987776
No 251
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.95 E-value=0.00081 Score=79.75 Aligned_cols=41 Identities=39% Similarity=0.601 Sum_probs=37.1
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCC-CCCCCCc
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGR-SRPGGRV 201 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~-~~~GGr~ 201 (752)
..+||+|||||++|++||..+++.|.+|+|+|+. +.+||-|
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtC 156 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTC 156 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccce
Confidence 4689999999999999999999999999999974 4689866
No 252
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=96.93 E-value=0.00094 Score=76.58 Aligned_cols=39 Identities=31% Similarity=0.488 Sum_probs=35.6
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
++|+|||||++|+.||..|++.|.+|+|+|+. .+||.+-
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~ 40 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAV 40 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCccc
Confidence 58999999999999999999999999999986 5888764
No 253
>PRK08275 putative oxidoreductase; Provisional
Probab=96.92 E-value=0.00085 Score=78.64 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=33.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHhC--CCeEEEEcCCCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSF--GFKVVVLEGRSRPG 198 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~--g~~v~v~E~~~~~G 198 (752)
..+||+|||||+|||+||..+++. |.+|+|+||.+..+
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~ 47 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKR 47 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCC
Confidence 457999999999999999999987 68999999988643
No 254
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=96.92 E-value=0.00083 Score=78.98 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=35.3
Q ss_pred CCcEEEECCChhHHHHHHHHHhC--CCeEEEEcCCCCCCCCc
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSF--GFKVVVLEGRSRPGGRV 201 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~--g~~v~v~E~~~~~GGr~ 201 (752)
.+||+|||||+|||+||..+++. |.+|+|+||....||..
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s 44 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT 44 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence 46999999999999999999987 57999999998777643
No 255
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.92 E-value=0.01 Score=67.53 Aligned_cols=36 Identities=33% Similarity=0.376 Sum_probs=33.0
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRP 197 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 197 (752)
..+|+|||||.+|+.+|..|++.|.+|+|+|+.+++
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 358999999999999999999999999999997754
No 256
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.91 E-value=0.00083 Score=78.53 Aligned_cols=39 Identities=31% Similarity=0.325 Sum_probs=33.7
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCC-CCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR-PGGR 200 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~-~GGr 200 (752)
...||+|||||.|||+||..+ +.|.+|+|+||... .||.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~ 45 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGC 45 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCcc
Confidence 357999999999999999999 89999999999764 3443
No 257
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.88 E-value=0.0041 Score=69.27 Aligned_cols=50 Identities=10% Similarity=0.252 Sum_probs=39.3
Q ss_pred HHHHHHHcCCcEEcCceEEEEEecCCcEEEEE-CCEEEEecEEEEcCChhh
Q 004458 360 RLIKALCEGVPIFYEKTVNTIKYGNEGVEVIA-GDQMFQADMVLCTVPLGV 409 (752)
Q Consensus 360 ~L~~aLa~gl~I~ln~~V~~I~~~~~gv~V~~-~g~~~~AD~VV~AvPl~v 409 (752)
.+.+++.+|++|+++++|++|+.+++++.|++ +|.++.||+||+|+....
T Consensus 140 ~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 140 ALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred HHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence 33333334789999999999998888888876 566699999999997664
No 258
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=96.88 E-value=0.0039 Score=66.75 Aligned_cols=48 Identities=40% Similarity=0.537 Sum_probs=40.4
Q ss_pred CCCCCCCcEEEECCChhHHHHHHHHHhC----CCeEEEEcCCCCCCCCceEE
Q 004458 157 PEEANEGSVIIVGAGLAGLAAAKQLMSF----GFKVVVLEGRSRPGGRVYTQ 204 (752)
Q Consensus 157 ~~~~~~~~v~ViGaG~aGl~aA~~L~~~----g~~v~v~E~~~~~GGr~~T~ 204 (752)
|+....+.+-|||+|+|||++|-.|-+. |.++.|+|.-+-.||-.-..
T Consensus 17 pE~VdqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~ 68 (587)
T COG4716 17 PENVDQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGA 68 (587)
T ss_pred ccccccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCC
Confidence 3445678999999999999999999886 56999999999999976443
No 259
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.86 E-value=0.00083 Score=79.36 Aligned_cols=34 Identities=41% Similarity=0.642 Sum_probs=31.9
Q ss_pred EEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCC
Q 004458 165 VIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPG 198 (752)
Q Consensus 165 v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 198 (752)
|+|||||+|||+||..+++.|.+|+|+||.+.+|
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~ 34 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPR 34 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCC
Confidence 7999999999999999999999999999988665
No 260
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.85 E-value=0.0012 Score=76.09 Aligned_cols=33 Identities=39% Similarity=0.642 Sum_probs=31.3
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGR 194 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~ 194 (752)
.+||+|||||++|+.||..+++.|.+|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 479999999999999999999999999999974
No 261
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=96.83 E-value=0.0082 Score=63.13 Aligned_cols=41 Identities=32% Similarity=0.476 Sum_probs=36.3
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhC--CCeEEEEcCCCCCCCC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSF--GFKVVVLEGRSRPGGR 200 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~--g~~v~v~E~~~~~GGr 200 (752)
..++|+||||||+.||+.|++|.-. +.+|.|+|+...++=+
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~h 88 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVH 88 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhcee
Confidence 4579999999999999999999766 8999999999888733
No 262
>PRK09077 L-aspartate oxidase; Provisional
Probab=96.81 E-value=0.0012 Score=77.16 Aligned_cols=39 Identities=33% Similarity=0.502 Sum_probs=35.0
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGR 200 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr 200 (752)
...||+|||+|+|||+||..+++. .+|+|+||....||.
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS 45 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence 457999999999999999999986 899999999877763
No 263
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.77 E-value=0.0014 Score=76.33 Aligned_cols=41 Identities=34% Similarity=0.485 Sum_probs=37.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCc
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRV 201 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~ 201 (752)
.++||+|||||.|||.||..+++.|.+|+|+||....+|+.
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t 45 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHT 45 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCch
Confidence 46899999999999999999999999999999998777544
No 264
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=96.76 E-value=0.0014 Score=77.28 Aligned_cols=33 Identities=33% Similarity=0.586 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHH----hCCCeEEEEcCCCC
Q 004458 164 SVIIVGAGLAGLAAAKQLM----SFGFKVVVLEGRSR 196 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~----~~g~~v~v~E~~~~ 196 (752)
||+|||||+|||+||..++ +.|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 77999999999774
No 265
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=96.74 E-value=0.0015 Score=70.23 Aligned_cols=37 Identities=43% Similarity=0.488 Sum_probs=33.9
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR 196 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~ 196 (752)
....||||||||++|-+.|+.|++.|.+|.|+|+.-.
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~ 79 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLS 79 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccc
Confidence 4568999999999999999999999999999999654
No 266
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.74 E-value=0.0014 Score=77.20 Aligned_cols=37 Identities=32% Similarity=0.284 Sum_probs=32.9
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGG 199 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG 199 (752)
..||+|||||+|||+||.++++. .+|+|+||....||
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 57999999999999999999986 89999999875554
No 267
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.72 E-value=0.0098 Score=66.20 Aligned_cols=36 Identities=28% Similarity=0.427 Sum_probs=32.5
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRP 197 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 197 (752)
..+|+|||||.+|+-+|..|.+.|.+|+++|+.+++
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~ 176 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASL 176 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcc
Confidence 458999999999999999999999999999987643
No 268
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.72 E-value=0.0016 Score=73.31 Aligned_cols=34 Identities=32% Similarity=0.490 Sum_probs=32.0
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
++||+|||+|++|++||..|++.|.+|+|+|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5799999999999999999999999999999864
No 269
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=96.72 E-value=0.0016 Score=68.85 Aligned_cols=33 Identities=30% Similarity=0.473 Sum_probs=30.4
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGR 194 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~ 194 (752)
++||+|||||++||+||.+|+++|.++.|+-..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~g 34 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRG 34 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCC
Confidence 579999999999999999999999999988763
No 270
>PRK02106 choline dehydrogenase; Validated
Probab=96.58 E-value=0.0023 Score=75.19 Aligned_cols=36 Identities=36% Similarity=0.422 Sum_probs=33.0
Q ss_pred CCCcEEEECCChhHHHHHHHHHh-CCCeEEEEcCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMS-FGFKVVVLEGRSR 196 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~-~g~~v~v~E~~~~ 196 (752)
..+||||||||.+|+.+|..|++ .|++|+|||+.+.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 35899999999999999999999 8999999999753
No 271
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.58 E-value=0.0023 Score=68.78 Aligned_cols=42 Identities=31% Similarity=0.561 Sum_probs=39.7
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
.++||+|||+|+.|..||.+.++.|.+.+.+|++..+||-+-
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcL 79 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCL 79 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceee
Confidence 579999999999999999999999999999999999998664
No 272
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.50 E-value=0.019 Score=65.65 Aligned_cols=36 Identities=36% Similarity=0.537 Sum_probs=32.9
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRP 197 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 197 (752)
..+|+|||||.+|+-+|..|.+.|.+|+|+|+.+++
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 205 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI 205 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence 468999999999999999999999999999987643
No 273
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.47 E-value=0.0032 Score=70.56 Aligned_cols=38 Identities=32% Similarity=0.462 Sum_probs=33.2
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCC--eEEEEcCCCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGF--KVVVLEGRSRPG 198 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~--~v~v~E~~~~~G 198 (752)
..++|+|||||++|++||..|++.|+ +|+|+++.+...
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~ 41 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP 41 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC
Confidence 35689999999999999999999987 799999987544
No 274
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.076 Score=57.92 Aligned_cols=45 Identities=27% Similarity=0.347 Sum_probs=41.4
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEEec
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQKM 206 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~ 206 (752)
.+||+|+|-|+.=..-+-.|+..|.+|+.+++++.-||-..|.+.
T Consensus 4 eyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl 48 (440)
T KOG1439|consen 4 EYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTL 48 (440)
T ss_pred ceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeH
Confidence 489999999999988888999999999999999999999888764
No 275
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=96.40 E-value=0.022 Score=65.23 Aligned_cols=36 Identities=36% Similarity=0.549 Sum_probs=33.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRP 197 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 197 (752)
.++|+|||||.+|+-.|..|++.|.+|+|+|+.+++
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 210 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL 210 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 478999999999999999999999999999987754
No 276
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.38 E-value=0.0032 Score=71.68 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=32.1
Q ss_pred CcEEEECCChhHHHHHHHHHhCC--CeEEEEcCCCCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFG--FKVVVLEGRSRPG 198 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g--~~v~v~E~~~~~G 198 (752)
++|+|||||++||+||..|++.| .+|+|+|+++..+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~ 38 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS 38 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce
Confidence 37999999999999999999875 5899999998764
No 277
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.36 E-value=0.0035 Score=77.64 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=33.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR 196 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~ 196 (752)
..+||+|||||+|||+||.++++.|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 467999999999999999999999999999999874
No 278
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.36 E-value=0.026 Score=64.65 Aligned_cols=36 Identities=28% Similarity=0.507 Sum_probs=32.9
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRP 197 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 197 (752)
..+|+|||||.+|+-+|..|++.|.+|+++|+.+++
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 207 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI 207 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCc
Confidence 468999999999999999999999999999997754
No 279
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=96.35 E-value=0.0035 Score=66.44 Aligned_cols=36 Identities=33% Similarity=0.443 Sum_probs=32.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHhC----CCeEEEEcCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSF----GFKVVVLEGRSR 196 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~----g~~v~v~E~~~~ 196 (752)
..++|+|||||.+|++.|+.|++. |++|+|+|+++.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 478999999999999999999874 799999999873
No 280
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.32 E-value=0.0039 Score=70.95 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=32.2
Q ss_pred CcEEEECCChhHHHHHHHHHhC--CCeEEEEcCCCCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSF--GFKVVVLEGRSRPG 198 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~--g~~v~v~E~~~~~G 198 (752)
++|+|||||++|++||..|++. +++|+|+|+++.++
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS 39 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence 5899999999999999999886 57999999988654
No 281
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.23 E-value=0.005 Score=71.66 Aligned_cols=38 Identities=32% Similarity=0.384 Sum_probs=33.7
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGR 200 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr 200 (752)
+||+|||||++|+.||..+++.|.+|+|+|+....+|.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~ 38 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGK 38 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccC
Confidence 58999999999999999999999999999997544443
No 282
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.22 E-value=0.013 Score=64.31 Aligned_cols=36 Identities=31% Similarity=0.305 Sum_probs=27.2
Q ss_pred CCcEEEECCChhHHHHHHHHHhCC-CeEEEEcCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFG-FKVVVLEGRSRP 197 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g-~~v~v~E~~~~~ 197 (752)
.+|+|+||.|+++|+.|..|...+ .++..||+++..
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f 38 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF 38 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 369999999999999999999887 899999998743
No 283
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=96.20 E-value=0.0022 Score=66.52 Aligned_cols=41 Identities=27% Similarity=0.577 Sum_probs=35.9
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCC------CeEEEEcCCCCCCCC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFG------FKVVVLEGRSRPGGR 200 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g------~~v~v~E~~~~~GGr 200 (752)
...++|+|||||+.|.++||+|++.+ ..|+|+|.+.-.||-
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ga 54 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGA 54 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccc
Confidence 34689999999999999999999987 789999998766653
No 284
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.13 E-value=0.0047 Score=65.30 Aligned_cols=37 Identities=38% Similarity=0.548 Sum_probs=33.9
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPG 198 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 198 (752)
...|.|||||++|.-|||++++.|++|.++|-++.-+
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~ 39 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG 39 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence 4679999999999999999999999999999987655
No 285
>PRK07846 mycothione reductase; Reviewed
Probab=96.11 E-value=0.0059 Score=69.75 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=31.5
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCc
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRV 201 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~ 201 (752)
+||+|||||++|.+||.. ..|.+|.|+|+ +.+||-|
T Consensus 2 yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC 37 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTC 37 (451)
T ss_pred CCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcc
Confidence 799999999999999876 46999999998 5688766
No 286
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.12 Score=55.86 Aligned_cols=46 Identities=22% Similarity=0.212 Sum_probs=42.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEEec
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQKM 206 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~ 206 (752)
..+||+|+|-|+.=..-+..|+-.|.+|+.+++++.-|+-..|.+.
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl 50 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTL 50 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeH
Confidence 4789999999999999999999999999999999999998888765
No 287
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.08 E-value=0.0065 Score=69.41 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=31.8
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCc
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRV 201 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~ 201 (752)
.+||+|||||++|..||.. ..|.+|.|+|+ +.+||-|
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC 38 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTC 38 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCee
Confidence 5899999999999998754 47999999998 5688866
No 288
>PRK06116 glutathione reductase; Validated
Probab=96.05 E-value=0.044 Score=62.54 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=32.2
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR 196 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~ 196 (752)
..+|+|||+|.+|+-.|..|++.|.+|+++++.++
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 201 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDA 201 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 46899999999999999999999999999998664
No 289
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.05 E-value=0.0064 Score=67.78 Aligned_cols=40 Identities=40% Similarity=0.610 Sum_probs=37.3
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCc
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRV 201 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~ 201 (752)
..+|+|||+|..||.+|.+|++.|++|+++|+.+++||+.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~ 175 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL 175 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhh
Confidence 4799999999999999999999999999999999998654
No 290
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.02 E-value=0.0066 Score=67.87 Aligned_cols=33 Identities=39% Similarity=0.579 Sum_probs=31.1
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
+||+|||||++|+++|..|++.|.+|+|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 589999999999999999999999999999865
No 291
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=95.96 E-value=0.0061 Score=71.11 Aligned_cols=33 Identities=36% Similarity=0.391 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHHhCC-CeEEEEcCCCC
Q 004458 164 SVIIVGAGLAGLAAAKQLMSFG-FKVVVLEGRSR 196 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~g-~~v~v~E~~~~ 196 (752)
|+||||||.+|+.+|..|++.| ++|+|||+...
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 7999999999999999999998 79999999753
No 292
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=95.92 E-value=0.0082 Score=67.99 Aligned_cols=37 Identities=22% Similarity=0.437 Sum_probs=33.3
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR 196 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~ 196 (752)
.++++|||||||.+|+.+|..|.+.+++|+|+|+++.
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence 4567999999999999999999877899999998874
No 293
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.87 E-value=0.064 Score=61.01 Aligned_cols=36 Identities=36% Similarity=0.518 Sum_probs=32.4
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRP 197 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 197 (752)
..+|+|||+|..|+-.|..|.+.|.+|+|+|+.+++
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 193 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLF 193 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 358999999999999999999999999999986543
No 294
>PRK14727 putative mercuric reductase; Provisional
Probab=95.79 E-value=0.063 Score=61.85 Aligned_cols=40 Identities=13% Similarity=0.327 Sum_probs=33.7
Q ss_pred CCcEEcCceEEEEEecCCcEEEEECCEEEEecEEEEcCCh
Q 004458 368 GVPIFYEKTVNTIKYGNEGVEVIAGDQMFQADMVLCTVPL 407 (752)
Q Consensus 368 gl~I~ln~~V~~I~~~~~gv~V~~~g~~~~AD~VV~AvPl 407 (752)
|++|+++++|++|...++++.|..+++++.+|.||+|++.
T Consensus 242 GV~i~~~~~V~~i~~~~~~~~v~~~~g~i~aD~VlvA~G~ 281 (479)
T PRK14727 242 GIEVLNNTQASLVEHDDNGFVLTTGHGELRAEKLLISTGR 281 (479)
T ss_pred CCEEEcCcEEEEEEEeCCEEEEEEcCCeEEeCEEEEccCC
Confidence 7899999999999887777777765567999999999854
No 295
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=95.78 E-value=0.0088 Score=69.84 Aligned_cols=36 Identities=39% Similarity=0.501 Sum_probs=33.1
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
..++|+||||+|.+|.+.|..|+..|++|+|||+..
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 357899999999999999999999999999999953
No 296
>PLN02507 glutathione reductase
Probab=95.78 E-value=0.063 Score=62.15 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=32.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR 196 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~ 196 (752)
..+|+|||||..|+-.|..|++.|.+|+|+++.++
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 237 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKEL 237 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCC
Confidence 36899999999999999999999999999998664
No 297
>PRK14694 putative mercuric reductase; Provisional
Probab=95.74 E-value=0.069 Score=61.33 Aligned_cols=39 Identities=10% Similarity=0.298 Sum_probs=32.8
Q ss_pred CCcEEcCceEEEEEecCCcEEEEECCEEEEecEEEEcCC
Q 004458 368 GVPIFYEKTVNTIKYGNEGVEVIAGDQMFQADMVLCTVP 406 (752)
Q Consensus 368 gl~I~ln~~V~~I~~~~~gv~V~~~g~~~~AD~VV~AvP 406 (752)
|+++++++.|++|+.+++.+.+..+++++.+|.||+|+.
T Consensus 232 GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G 270 (468)
T PRK14694 232 GIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATG 270 (468)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccC
Confidence 789999999999988776666766666799999999975
No 298
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.07 E-value=0.026 Score=63.16 Aligned_cols=39 Identities=26% Similarity=0.341 Sum_probs=33.4
Q ss_pred CCcEEEECCChhHHHHHHHHHhCC---CeEEEEcCCCCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFG---FKVVVLEGRSRPGGR 200 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g---~~v~v~E~~~~~GGr 200 (752)
+++|+|||+|.+|+.+|.+|.+.- ..|.|+|.++..|+-
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~G 42 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQG 42 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCC
Confidence 368999999999999999999852 239999999999853
No 299
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=94.97 E-value=0.018 Score=64.47 Aligned_cols=32 Identities=47% Similarity=0.688 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHHHHhCCCeEEEEcCCCC
Q 004458 164 SVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR 196 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~ 196 (752)
+|+|||+|++||++|..|.+. ++|+|+-|.+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence 899999999999999999998 99999999763
No 300
>PLN02785 Protein HOTHEAD
Probab=94.84 E-value=0.027 Score=66.31 Aligned_cols=34 Identities=35% Similarity=0.502 Sum_probs=31.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
..+|+||||||.+|+..|..|++ +++|+|||+..
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 46999999999999999999999 69999999965
No 301
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=94.82 E-value=0.029 Score=61.99 Aligned_cols=33 Identities=15% Similarity=0.347 Sum_probs=29.2
Q ss_pred cEEEECCChhHHHHHHHHHh---CCCeEEEEcCCCC
Q 004458 164 SVIIVGAGLAGLAAAKQLMS---FGFKVVVLEGRSR 196 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~---~g~~v~v~E~~~~ 196 (752)
+|+|||||++|+.+|.+|.+ .+++|+|+|+++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence 59999999999999999964 3689999998875
No 302
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=94.63 E-value=0.039 Score=61.39 Aligned_cols=33 Identities=18% Similarity=0.433 Sum_probs=29.4
Q ss_pred CcEEEECCChhHHHHHHHHHhCC--CeEEEEcCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFG--FKVVVLEGRS 195 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g--~~v~v~E~~~ 195 (752)
++|+|||||+||+++|..|.+.+ .+|+|+++++
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence 58999999999999999998864 5799999876
No 303
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.60 E-value=0.04 Score=63.42 Aligned_cols=36 Identities=31% Similarity=0.580 Sum_probs=32.7
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR 196 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~ 196 (752)
..++|+|||+|.+|+++|..|.+.|++|+++|+++.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 356899999999999999999999999999998763
No 304
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=94.52 E-value=0.044 Score=61.45 Aligned_cols=37 Identities=41% Similarity=0.399 Sum_probs=34.0
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPG 198 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 198 (752)
..+|+|||+|..|+-+|..|++.|.+|+|+|+.+++.
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l 180 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVM 180 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcch
Confidence 4689999999999999999999999999999988655
No 305
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=94.42 E-value=0.047 Score=60.76 Aligned_cols=36 Identities=28% Similarity=0.516 Sum_probs=32.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCC--CeEEEEcCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFG--FKVVVLEGRSR 196 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g--~~v~v~E~~~~ 196 (752)
.+++|||||||.+||.+|..|.+.- .+|+++|+++.
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~ 39 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY 39 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence 3679999999999999999999974 89999999885
No 306
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.34 E-value=0.052 Score=52.61 Aligned_cols=32 Identities=28% Similarity=0.371 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 164 SVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
+|+|||||-.|.+.|..|++.|++|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 68999999999999999999999999999864
No 307
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=94.33 E-value=1.1 Score=48.37 Aligned_cols=53 Identities=28% Similarity=0.201 Sum_probs=40.1
Q ss_pred HHHHHHHHHc-CCcEEcCceEEEEEecCCcEE-EEECCEEEEecEEEEcCChhhH
Q 004458 358 NWRLIKALCE-GVPIFYEKTVNTIKYGNEGVE-VIAGDQMFQADMVLCTVPLGVL 410 (752)
Q Consensus 358 ~~~L~~aLa~-gl~I~ln~~V~~I~~~~~gv~-V~~~g~~~~AD~VV~AvPl~vL 410 (752)
+..+.+.+.+ |++|+.+++|+.|...++++. |.+++.++.||.||+|+....-
T Consensus 140 ~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 140 LKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSGDVQADQVVLAAGAWAG 194 (337)
T ss_pred HHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCCEEECCEEEEcCChhhh
Confidence 3444444333 789999999999998877765 5665558999999999987654
No 308
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=94.15 E-value=0.058 Score=66.23 Aligned_cols=37 Identities=22% Similarity=0.404 Sum_probs=32.8
Q ss_pred CCcEEEECCChhHHHHHHHHHhC----CCeEEEEcCCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSF----GFKVVVLEGRSRPG 198 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~----g~~v~v~E~~~~~G 198 (752)
+++|+|||+|++|+.+|.+|.+. +++|+|+++.++++
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~ 43 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA 43 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence 45899999999999999999764 57999999999876
No 309
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.11 E-value=0.055 Score=61.90 Aligned_cols=34 Identities=35% Similarity=0.603 Sum_probs=31.8
Q ss_pred cEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCC
Q 004458 164 SVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRP 197 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 197 (752)
+|.|||.|.+|++||+.|.+.|++|+++|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 6999999999999999999999999999987754
No 310
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=0.032 Score=59.53 Aligned_cols=40 Identities=35% Similarity=0.484 Sum_probs=33.2
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCc
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRV 201 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~ 201 (752)
...+||+|||||++|.+||.+.++.|.+.-|+- .|.||.+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQv 248 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQV 248 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCee
Confidence 457999999999999999999999999865542 4577765
No 311
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.70 E-value=0.086 Score=52.42 Aligned_cols=32 Identities=25% Similarity=0.478 Sum_probs=28.2
Q ss_pred cEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 164 SVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
+|.|||||..|..-|..++..|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999999854
No 312
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.65 E-value=0.11 Score=55.68 Aligned_cols=43 Identities=28% Similarity=0.412 Sum_probs=39.8
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCce
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVY 202 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~ 202 (752)
.+.+|..|||||-.|+++|+..++.|.+|.|+|..-++||-+-
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCV 60 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCV 60 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEE
Confidence 4589999999999999999999999999999999889998764
No 313
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=93.47 E-value=0.087 Score=60.56 Aligned_cols=36 Identities=42% Similarity=0.644 Sum_probs=33.2
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRP 197 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 197 (752)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~i 215 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRI 215 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence 469999999999999999999999999999998754
No 314
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=93.43 E-value=0.068 Score=60.57 Aligned_cols=34 Identities=35% Similarity=0.491 Sum_probs=30.3
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGR 194 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~ 194 (752)
..+||+|||||.||.-||...++.|+++.++--+
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 3589999999999999999999999999887543
No 315
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=93.37 E-value=0.099 Score=59.45 Aligned_cols=37 Identities=38% Similarity=0.495 Sum_probs=34.5
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPG 198 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 198 (752)
..+++|||||..|+=-|..+++.|.+|+|+|+.+++-
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL 209 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL 209 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 4689999999999999999999999999999998754
No 316
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.28 E-value=0.098 Score=52.26 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=27.1
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
++|.|||.|..||..|..|++.|++|+.+|.+.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 589999999999999999999999999999866
No 317
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=92.81 E-value=0.12 Score=59.20 Aligned_cols=36 Identities=25% Similarity=0.489 Sum_probs=33.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRP 197 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 197 (752)
..+|+|||+|.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 201 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL 201 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence 368999999999999999999999999999997754
No 318
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=92.79 E-value=0.1 Score=55.59 Aligned_cols=34 Identities=35% Similarity=0.558 Sum_probs=31.9
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEG 193 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~ 193 (752)
..++|.||||||-+||+||.+.+..|.+|.+++.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 4589999999999999999999999999999985
No 319
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=92.78 E-value=0.096 Score=55.07 Aligned_cols=35 Identities=29% Similarity=0.484 Sum_probs=28.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCC-------CeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFG-------FKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g-------~~v~v~E~~~ 195 (752)
+.++|+|||+|+.||++|..+.+.+ .+|+|++-+.
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 3579999999999999999888854 5788886543
No 320
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=92.77 E-value=0.1 Score=63.73 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=34.9
Q ss_pred HHHHHHc-CCcEEcCceEEEEEecCCcEEEEE-CCEEEEecEEEEcCC
Q 004458 361 LIKALCE-GVPIFYEKTVNTIKYGNEGVEVIA-GDQMFQADMVLCTVP 406 (752)
Q Consensus 361 L~~aLa~-gl~I~ln~~V~~I~~~~~gv~V~~-~g~~~~AD~VV~AvP 406 (752)
+.+.|.+ |++|++++.|++|..++....|+. +|+++.+|.||++++
T Consensus 188 l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G 235 (785)
T TIGR02374 188 LQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAG 235 (785)
T ss_pred HHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCC
Confidence 3444544 899999999999976544444543 788999999999985
No 321
>PRK06370 mercuric reductase; Validated
Probab=92.76 E-value=0.15 Score=58.55 Aligned_cols=37 Identities=32% Similarity=0.508 Sum_probs=34.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPG 198 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 198 (752)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.+++.
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l 207 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL 207 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC
Confidence 4789999999999999999999999999999987654
No 322
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.76 E-value=0.14 Score=58.81 Aligned_cols=36 Identities=28% Similarity=0.447 Sum_probs=33.2
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRP 197 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 197 (752)
..+|+|||||..|+-.|..|.+.|.+|+|+|+.+++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~i 209 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI 209 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 468999999999999999999999999999997754
No 323
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=92.67 E-value=0.14 Score=58.57 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=33.8
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPG 198 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 198 (752)
..+|+|||||.+|+-.|..|++.|.+|+|+|+.+++.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il 202 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL 202 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 4689999999999999999999999999999987654
No 324
>PRK07846 mycothione reductase; Reviewed
Probab=92.62 E-value=0.15 Score=58.37 Aligned_cols=36 Identities=28% Similarity=0.471 Sum_probs=33.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRP 197 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 197 (752)
..+|+|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l 201 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRL 201 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence 468999999999999999999999999999997754
No 325
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.59 E-value=0.14 Score=58.82 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=33.7
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPG 198 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 198 (752)
..+|+|||||..|+-.|..|.+.|.+|+|+|+.+++.
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il 210 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI 210 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 3689999999999999999999999999999987643
No 326
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=92.58 E-value=0.15 Score=58.39 Aligned_cols=36 Identities=31% Similarity=0.442 Sum_probs=33.0
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRP 197 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 197 (752)
..+|+|||||.+|+-+|..|.+.|.+|+|+|+.+++
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l 205 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL 205 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 368999999999999999999999999999997754
No 327
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.58 E-value=0.15 Score=58.16 Aligned_cols=35 Identities=40% Similarity=0.657 Sum_probs=32.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
+.++|+|||+|.+|+++|..|++.|++|+++|...
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 45789999999999999999999999999999864
No 328
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=92.56 E-value=0.14 Score=51.12 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=29.7
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
..++|+|||+|.|+.-+|..|++.|.+|+++=+++
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 46899999999999999999999999999997765
No 329
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.52 E-value=0.17 Score=49.63 Aligned_cols=35 Identities=34% Similarity=0.497 Sum_probs=30.0
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
...+|+|+|+|.+|+.||..|...|.+|+++|.+.
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 35799999999999999999999999999999754
No 330
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.46 E-value=0.13 Score=55.54 Aligned_cols=33 Identities=39% Similarity=0.522 Sum_probs=30.9
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
++|.|||+|..|.+.|..|++.|++|+++++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 479999999999999999999999999999865
No 331
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=92.43 E-value=0.16 Score=58.10 Aligned_cols=37 Identities=32% Similarity=0.511 Sum_probs=33.9
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPG 198 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 198 (752)
.++|+|||+|.+|+-.|..|++.|.+|+++|+.+++.
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 205 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL 205 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Confidence 4689999999999999999999999999999987654
No 332
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=92.39 E-value=0.29 Score=49.42 Aligned_cols=44 Identities=32% Similarity=0.490 Sum_probs=36.6
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcC----CCCCCCCceEEe
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEG----RSRPGGRVYTQK 205 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~----~~~~GGr~~T~~ 205 (752)
.-+|+|||+|+++-+||.+++++-.+-++||. .-.+||...|.+
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT 55 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTT 55 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeee
Confidence 34899999999999999999999999999995 224577776543
No 333
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.37 E-value=0.16 Score=58.26 Aligned_cols=36 Identities=33% Similarity=0.521 Sum_probs=32.8
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRP 197 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 197 (752)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~ 207 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRA 207 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 468999999999999999999999999999987654
No 334
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=92.17 E-value=0.18 Score=57.11 Aligned_cols=36 Identities=28% Similarity=0.461 Sum_probs=32.6
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRP 197 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 197 (752)
..+|+|||||.+|+-+|..|++.|.+|+++++.+++
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 172 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI 172 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence 358999999999999999999999999999987654
No 335
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=92.15 E-value=0.2 Score=47.82 Aligned_cols=31 Identities=29% Similarity=0.493 Sum_probs=29.0
Q ss_pred EEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 165 VIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 165 v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
|+|||+|..|...|+.|++.|++|+++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999998754
No 336
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=92.15 E-value=0.17 Score=57.62 Aligned_cols=37 Identities=19% Similarity=0.368 Sum_probs=33.7
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPG 198 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 198 (752)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~ 184 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN 184 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 3589999999999999999999999999999987654
No 337
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.13 E-value=0.16 Score=53.76 Aligned_cols=77 Identities=27% Similarity=0.377 Sum_probs=55.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCC--------CCCCCCceEEecCCC-----CceEEEeccceeEcCCCc
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGR--------SRPGGRVYTQKMGKK-----GEFAAVDLGGSVITGIHA 227 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~--------~~~GGr~~T~~~~g~-----g~~~~~d~Ga~~i~~~~~ 227 (752)
...+|+|||||+.|.-||.-..-.|.+|+|+|.+ +..|||+.+...... -.....=.|+-.+++...
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka 246 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA 246 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC
Confidence 4569999999999999999999999999999987 468999888776421 011234457777777653
Q ss_pred cH--HHHHHHHc
Q 004458 228 NP--LGVLARQL 237 (752)
Q Consensus 228 n~--l~~L~~~L 237 (752)
.- ..++.+++
T Consensus 247 PkLvt~e~vk~M 258 (371)
T COG0686 247 PKLVTREMVKQM 258 (371)
T ss_pred ceehhHHHHHhc
Confidence 21 24445554
No 338
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=92.09 E-value=0.19 Score=57.91 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=33.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRP 197 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 197 (752)
..+|+|||+|.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 218 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAF 218 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCcc
Confidence 469999999999999999999999999999997754
No 339
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=91.94 E-value=0.24 Score=56.46 Aligned_cols=106 Identities=21% Similarity=0.247 Sum_probs=78.7
Q ss_pred CCCCCCCCHHHHhccccCc-cCc----cccchhHHHHHHHHHHhhhccccCCCHHHHhhhccchhHHHHHHHHHHHHHcc
Q 004458 68 GFPIDALLEEEIRAGVVGV-LGG----KEQNDYIVVRNHILARWRGNVRVWLTKGQIKETVSSEYEHLMNSAYDFLLYNG 142 (752)
Q Consensus 68 ~~p~~~~~~~E~~~~~~~~-~~~----~~~~~yl~irn~i~~~w~~np~~~~t~~~~~~~~~~~~~~l~~~~~~~l~~~g 142 (752)
=|.....++-| ..-+|+ +.+ +.+..|..-||.|....+.||..++|...++..+.. ....+.+++.||...|
T Consensus 55 WFd~~~ih~iE--~rs~pEFF~gks~sktPe~Y~~yRnfii~tyrlnp~~ylt~ta~rrnl~g-Dv~ai~Rvh~FlE~WG 131 (506)
T KOG1279|consen 55 WFDKSDIHDIE--RRSLPEFFNGKSKSKTPEVYMKYRNFIINTYRLNPQEYLTFTACRRNLAG-DVCAIARVHAFLEQWG 131 (506)
T ss_pred hcChhhhhhHH--hccchhhhcCCCCCCCHHHHHHHHHhhhhhhccCcccchhHHHHHhcccc-hHHHHHHHHhhHHhhc
Confidence 35555555555 566888 344 345889999999999999999999999999999877 4555778999999999
Q ss_pred ccccccCCCCCCCCCCCCCCCcEEEECCChhHHH
Q 004458 143 YINFGVAPSFTANMPEEANEGSVIIVGAGLAGLA 176 (752)
Q Consensus 143 ~in~G~~~~~~~~~~~~~~~~~v~ViGaG~aGl~ 176 (752)
+|||-+.+...+..-......+.-+....+-|+.
T Consensus 132 LINy~~d~e~rp~~~~p~~t~h~~~~~~tp~~~~ 165 (506)
T KOG1279|consen 132 LINYQVDAESRPHPIEPPETSHFQVLADTPRGLA 165 (506)
T ss_pred ccccccChhhCCcccCCCcccccccccCCCcccc
Confidence 9999887754443333234455666666666654
No 340
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=91.92 E-value=0.24 Score=50.28 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=31.7
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
..++|+|||||.+|+..|..|.+.|.+|+|+....
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 45799999999999999999999999999997654
No 341
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.86 E-value=0.17 Score=54.26 Aligned_cols=35 Identities=29% Similarity=0.352 Sum_probs=30.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
+.++|+|||||-||+-||.-|+-.-..|+++|=.+
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~ 387 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 387 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhhhheeeeeecch
Confidence 46899999999999999999987666899998654
No 342
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.63 E-value=0.2 Score=54.37 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=31.6
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
-++|+|||+|..|..-|..++..|++|+++|..+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3579999999999999999999999999999865
No 343
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.55 E-value=0.23 Score=53.13 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=30.7
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
.+|+|||+|..|.+.|..|++.|++|++++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999754
No 344
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=91.53 E-value=0.22 Score=56.95 Aligned_cols=36 Identities=22% Similarity=0.421 Sum_probs=32.9
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRP 197 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 197 (752)
..+|+|||||..|+-.|..|++.|.+|+++|+.+++
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~l 204 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL 204 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 468999999999999999999999999999987654
No 345
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.50 E-value=0.2 Score=53.66 Aligned_cols=33 Identities=33% Similarity=0.408 Sum_probs=31.1
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
.+|.|||+|..|..-|..|++.|++|+++|.++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 489999999999999999999999999999865
No 346
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=91.48 E-value=0.26 Score=56.51 Aligned_cols=37 Identities=30% Similarity=0.503 Sum_probs=33.6
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPG 198 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 198 (752)
..+|+|||+|.+|+-.|..|++.|.+|+++|+.+++.
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l 213 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL 213 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCC
Confidence 3589999999999999999999999999999877654
No 347
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=91.37 E-value=0.22 Score=51.39 Aligned_cols=66 Identities=27% Similarity=0.360 Sum_probs=45.8
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEEecCCCCceEEEeccceeEcCCCccHHHHHHHHcCCCc
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQKMGKKGEFAAVDLGGSVITGIHANPLGVLARQLSIPL 241 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~~g~g~~~~~d~Ga~~i~~~~~n~l~~L~~~LGl~~ 241 (752)
++++|||+|--|.+.|..|.+.|++|+++|..+. ++..+ ..-+.+.+++.+...+ ...++++|+..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~---~~~~~--------~~~~~~~~~v~gd~t~--~~~L~~agi~~ 66 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE---RVEEF--------LADELDTHVVIGDATD--EDVLEEAGIDD 66 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH---HHHHH--------hhhhcceEEEEecCCC--HHHHHhcCCCc
Confidence 4799999999999999999999999999998763 22111 0112455555554332 24567788763
No 348
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=91.35 E-value=0.23 Score=60.77 Aligned_cols=37 Identities=30% Similarity=0.407 Sum_probs=33.9
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPG 198 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 198 (752)
..+|+|||||++|+-+|..|++.|.+|+|+|..+++-
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll 176 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM 176 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh
Confidence 3589999999999999999999999999999987654
No 349
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.33 E-value=0.2 Score=53.55 Aligned_cols=33 Identities=24% Similarity=0.482 Sum_probs=30.7
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
.+|+|||+|..|...|..|++.|++|++++.++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 479999999999999999999999999998865
No 350
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=91.16 E-value=0.19 Score=45.06 Aligned_cols=34 Identities=29% Similarity=0.447 Sum_probs=31.2
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGR 194 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~ 194 (752)
++++|+|||||..|..-+..|.+.|.+|+|+...
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 4679999999999999999999999999999876
No 351
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.15 E-value=0.26 Score=52.89 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=31.2
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
..+|.|||+|..|...|..|+++|++|++++.++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3579999999999999999999999999998754
No 352
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=91.04 E-value=0.25 Score=57.42 Aligned_cols=35 Identities=31% Similarity=0.387 Sum_probs=31.8
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR 196 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~ 196 (752)
.++|+|||||.+|+-+|..|++.|.+|+|+|..++
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 386 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADE 386 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCc
Confidence 46999999999999999999999999999986553
No 353
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=90.95 E-value=0.28 Score=55.73 Aligned_cols=36 Identities=28% Similarity=0.484 Sum_probs=32.5
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRP 197 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 197 (752)
..+|+|||||.+|+-+|..|.+.|.+|+++++.+++
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 184 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRI 184 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCccc
Confidence 468999999999999999999999999999986643
No 354
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=90.83 E-value=0.31 Score=52.79 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=31.7
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
..++|+|||+|..|.+-|..|+++|++|+++.++.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 45689999999999999999999999999998753
No 355
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=90.78 E-value=0.29 Score=55.89 Aligned_cols=34 Identities=26% Similarity=0.484 Sum_probs=31.8
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
.++|+|||||..|+-+|..|.+.|.+|+|+++++
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 4799999999999999999999999999998865
No 356
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=90.66 E-value=0.29 Score=60.24 Aligned_cols=37 Identities=32% Similarity=0.363 Sum_probs=33.8
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPG 198 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 198 (752)
..+++|||||+.|+-+|..|++.|.+|+|+|..+++-
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll 181 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM 181 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch
Confidence 4589999999999999999999999999999988654
No 357
>PTZ00058 glutathione reductase; Provisional
Probab=90.58 E-value=0.29 Score=57.43 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=33.7
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPG 198 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 198 (752)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il 273 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL 273 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence 5789999999999999999999999999999977543
No 358
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=90.41 E-value=0.33 Score=55.34 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=32.5
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRP 197 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 197 (752)
..+|+|||+|.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 201 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELI 201 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCC
Confidence 468999999999999999999999999999986643
No 359
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=90.40 E-value=0.42 Score=48.42 Aligned_cols=34 Identities=29% Similarity=0.490 Sum_probs=31.3
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGR 194 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~ 194 (752)
+.++|+|||||-.|...|..|.+.|.+|+|++..
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4679999999999999999999999999999754
No 360
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=90.33 E-value=0.43 Score=44.99 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=31.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCe-EEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFK-VVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~-v~v~E~~~ 195 (752)
+.++|+|||+|-+|-+++++|.+.|++ |+|+-|+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 478999999999999999999999986 99988753
No 361
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=90.30 E-value=0.3 Score=53.71 Aligned_cols=36 Identities=39% Similarity=0.467 Sum_probs=31.1
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhC----CCeEEEEcCCC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSF----GFKVVVLEGRS 195 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~----g~~v~v~E~~~ 195 (752)
...+||+|||||+.|++.|-.|... -.+|.++|..+
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 3478999999999999999999865 35899999983
No 362
>PRK04148 hypothetical protein; Provisional
Probab=90.27 E-value=0.29 Score=46.07 Aligned_cols=34 Identities=26% Similarity=0.474 Sum_probs=31.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR 196 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~ 196 (752)
..+|++||.| .|...|..|++.|++|+.+|-++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 4689999999 999999999999999999998775
No 363
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=90.27 E-value=0.34 Score=57.88 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=33.9
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPG 198 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 198 (752)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll 348 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL 348 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence 3689999999999999999999999999999988654
No 364
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=90.25 E-value=1.2 Score=49.65 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=39.7
Q ss_pred cCCCHHHHHHHHHc-----CCcEEcCceEEEEEecCCcEEEEE--CCEEEEecEEEEcCC
Q 004458 354 LAGGNWRLIKALCE-----GVPIFYEKTVNTIKYGNEGVEVIA--GDQMFQADMVLCTVP 406 (752)
Q Consensus 354 ~~gG~~~L~~aLa~-----gl~I~ln~~V~~I~~~~~gv~V~~--~g~~~~AD~VV~AvP 406 (752)
...-.+.++++|.. |++|+++++|++| +++++.|.+ ++.+++||+||+|+.
T Consensus 81 ~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtG 138 (376)
T TIGR03862 81 VEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALG 138 (376)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCC
Confidence 35667788887764 8999999999999 344577765 345799999999985
No 365
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.17 E-value=0.32 Score=52.14 Aligned_cols=33 Identities=21% Similarity=0.449 Sum_probs=30.8
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
.+|.|||+|..|...|..|++.|++|+++|.++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999865
No 366
>PRK10262 thioredoxin reductase; Provisional
Probab=90.15 E-value=0.38 Score=52.18 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=32.4
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR 196 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~ 196 (752)
.++|+|||+|.+|+-.|..|++.|.+|+++++.+.
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~ 180 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG 180 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc
Confidence 57999999999999999999999999999998764
No 367
>PRK12831 putative oxidoreductase; Provisional
Probab=90.12 E-value=0.36 Score=55.38 Aligned_cols=35 Identities=29% Similarity=0.428 Sum_probs=32.0
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
..++|+|||||..|+-+|..|.+.|.+|+|+++++
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 35799999999999999999999999999998754
No 368
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=90.00 E-value=0.35 Score=56.32 Aligned_cols=35 Identities=31% Similarity=0.369 Sum_probs=31.8
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR 196 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~ 196 (752)
.++|+|||||.+|+-+|..|+..|.+|+|+++.+.
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~ 385 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE 385 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc
Confidence 56999999999999999999999999999987653
No 369
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=89.99 E-value=0.35 Score=54.66 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=31.6
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
.++|.|||.|..|+..|..|++.|++|++++.++
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 4689999999999999999999999999999765
No 370
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.90 E-value=0.38 Score=55.25 Aligned_cols=35 Identities=20% Similarity=0.018 Sum_probs=32.0
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR 196 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~ 196 (752)
.++|+|+|.|.+|.+||..|.+.|.+|++.|.++.
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 46899999999999999999999999999997653
No 371
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=89.84 E-value=0.52 Score=45.72 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=30.4
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEc
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLE 192 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E 192 (752)
.+.++|+|||||-.|+.-|..|.+.|++|+|+.
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 357899999999999999999999999999994
No 372
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.84 E-value=0.37 Score=51.39 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=30.6
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
.+|.|||+|..|.+.|..|++.|++|+++|.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 479999999999999999999999999998754
No 373
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=89.80 E-value=0.49 Score=46.47 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=31.2
Q ss_pred CCCCcEEEECCCh-hHHHHHHHHHhCCCeEEEEcCC
Q 004458 160 ANEGSVIIVGAGL-AGLAAAKQLMSFGFKVVVLEGR 194 (752)
Q Consensus 160 ~~~~~v~ViGaG~-aGl~aA~~L~~~g~~v~v~E~~ 194 (752)
-..++|+|||+|- +|..+|.+|.+.|.+|++..++
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 3568999999996 6999999999999999999875
No 374
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=89.71 E-value=0.38 Score=56.55 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=33.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRP 197 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 197 (752)
...+|+|||||.+|+-.|..|++.|.+|+++++.+++
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~ 178 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence 3579999999999999999999999999999987753
No 375
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=89.63 E-value=0.4 Score=51.42 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=29.8
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGR 194 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~ 194 (752)
++|+|||+|-.|.+.|..|++.|++|+++.++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 36999999999999999999999999999974
No 376
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.34 E-value=0.47 Score=51.98 Aligned_cols=48 Identities=25% Similarity=0.308 Sum_probs=44.8
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCCceEEecC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGRVYTQKMG 207 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr~~T~~~~ 207 (752)
+..+||||||-|+.-...|..-++.|.+|+=++.+...||...++.+.
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms 53 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS 53 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence 458999999999999999999999999999999999999999998876
No 377
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=89.07 E-value=0.51 Score=52.50 Aligned_cols=34 Identities=35% Similarity=0.537 Sum_probs=31.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
..+|+|||+|.+|+.+|..|...|.+|++++++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4679999999999999999999999999998754
No 378
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=89.00 E-value=0.51 Score=50.08 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=31.7
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
...+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 35699999999999999999999999999999854
No 379
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=88.99 E-value=0.48 Score=51.23 Aligned_cols=33 Identities=27% Similarity=0.234 Sum_probs=30.8
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGR 194 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~ 194 (752)
.++|+|||+|-.|...|..|++.|++|+++.+.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 468999999999999999999999999999885
No 380
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=88.93 E-value=0.21 Score=56.44 Aligned_cols=40 Identities=28% Similarity=0.447 Sum_probs=35.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGGR 200 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GGr 200 (752)
...||+|||||.+|.-||.-.+-.|.+|.++|+.|-.-|-
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGT 105 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGT 105 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccccCCc
Confidence 4589999999999999999999999999999998865543
No 381
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=88.87 E-value=0.47 Score=52.25 Aligned_cols=34 Identities=32% Similarity=0.481 Sum_probs=30.6
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCe-EEEEcCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFK-VVVLEGRS 195 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~-v~v~E~~~ 195 (752)
..+|+|||+|..|+-+|..|.+.|.+ |+|+++.+
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 46899999999999999999999987 99998754
No 382
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=88.84 E-value=0.47 Score=50.98 Aligned_cols=31 Identities=29% Similarity=0.369 Sum_probs=29.2
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEG 193 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~ 193 (752)
++|+|||+|..|.+.|..|++.|++|+++.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 3799999999999999999999999999987
No 383
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=88.84 E-value=0.52 Score=50.59 Aligned_cols=33 Identities=30% Similarity=0.401 Sum_probs=30.8
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
++|.|||+|..|...|..|++.|++|++++.++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999865
No 384
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=88.83 E-value=0.51 Score=54.48 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=31.5
Q ss_pred CCcEEEECCChhHHHHHHHHHhC---CCeEEEEcCCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSF---GFKVVVLEGRSRPG 198 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~---g~~v~v~E~~~~~G 198 (752)
..+|+|||||..|+-.|..+... |.+|+|+|+.+++.
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il 226 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL 226 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc
Confidence 46899999999999999877654 99999999987653
No 385
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=88.78 E-value=0.5 Score=53.44 Aligned_cols=36 Identities=39% Similarity=0.669 Sum_probs=33.4
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRP 197 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 197 (752)
.++|+|+|-|.+|++||..|.+.|.+|++.|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 679999999999999999999999999999977655
No 386
>PLN02546 glutathione reductase
Probab=88.78 E-value=0.53 Score=55.23 Aligned_cols=37 Identities=22% Similarity=0.209 Sum_probs=33.5
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPG 198 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 198 (752)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il 288 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL 288 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc
Confidence 4789999999999999999999999999999877543
No 387
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.68 E-value=0.55 Score=53.77 Aligned_cols=34 Identities=29% Similarity=0.526 Sum_probs=31.6
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
.++|.|+|.|.+|+++|..|.+.|++|++.|.++
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 4589999999999999999999999999999765
No 388
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=88.56 E-value=0.53 Score=51.54 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=30.1
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGR 194 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~ 194 (752)
++|.|||+|..|.+.|..|++.|++|++++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 57999999999999999999999999999874
No 389
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.42 E-value=0.56 Score=54.20 Aligned_cols=33 Identities=30% Similarity=0.530 Sum_probs=30.7
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGR 194 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~ 194 (752)
..+|+|+|.|.+|++++..|.+.|++|++.|.+
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 468999999999999999999999999999965
No 390
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.29 E-value=0.59 Score=53.25 Aligned_cols=34 Identities=35% Similarity=0.563 Sum_probs=31.3
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
.++|+|+|+|-+|+++|..|++.|++|++.|.+.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4689999999999999999999999999998754
No 391
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=88.25 E-value=0.64 Score=50.25 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=30.0
Q ss_pred CcEEEECCChhHHHHHHHHHhCCC-eEEEEcCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGF-KVVVLEGRS 195 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~-~v~v~E~~~ 195 (752)
++|.|||+|..|.+.|+.|+..|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 489999999999999999999886 899999854
No 392
>PRK13748 putative mercuric reductase; Provisional
Probab=88.21 E-value=0.63 Score=54.71 Aligned_cols=33 Identities=21% Similarity=0.426 Sum_probs=30.8
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGR 194 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~ 194 (752)
..+|+|||||.+|+-.|..|.+.|.+|+|+++.
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 468999999999999999999999999999974
No 393
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=88.16 E-value=0.9 Score=45.95 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=32.5
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
.+.++|+|+|.|-.|..+|..|.+.|++|++.+.+.
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 346789999999999999999999999999998754
No 394
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=88.11 E-value=0.35 Score=50.05 Aligned_cols=32 Identities=31% Similarity=0.652 Sum_probs=26.4
Q ss_pred cEEEECCChhHHHHHHHHHhC--CCeEEEEcCCC
Q 004458 164 SVIIVGAGLAGLAAAKQLMSF--GFKVVVLEGRS 195 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~--g~~v~v~E~~~ 195 (752)
+.+||||||||.+||-+|+.. ..+|+++-+++
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass 34 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASS 34 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence 368999999999999999985 34778777765
No 395
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.97 E-value=0.58 Score=50.56 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=30.5
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
++|.|||+|..|.+.|..|++.|++|++++.+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 579999999999999999999999999998754
No 396
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=87.92 E-value=0.63 Score=53.35 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=31.7
Q ss_pred CCCcEEEECCChhHHH-HHHHHHhCCCeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLA-AAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~-aA~~L~~~g~~v~v~E~~~ 195 (752)
+.++|.|||.|-+|++ +|..|.+.|++|++.|.+.
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~ 41 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKE 41 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCC
Confidence 4568999999999999 5999999999999999865
No 397
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.86 E-value=0.72 Score=52.57 Aligned_cols=35 Identities=17% Similarity=0.351 Sum_probs=32.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR 196 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~ 196 (752)
.++|+|+|.|-+|+++|..|++.|++|+++|..+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 46899999999999999999999999999997654
No 398
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=87.84 E-value=0.79 Score=46.37 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=31.1
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCC-eEEEEcCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGF-KVVVLEGR 194 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~-~v~v~E~~ 194 (752)
...+|+|||+|-.|...|..|++.|+ +++|+|..
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 46799999999999999999999998 69999875
No 399
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=87.73 E-value=0.89 Score=50.48 Aligned_cols=46 Identities=24% Similarity=0.372 Sum_probs=39.0
Q ss_pred CCcEEEECCChhHHHHHHHHHhCC-CeEEEEcCC--------CCCCCCceEEecC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFG-FKVVVLEGR--------SRPGGRVYTQKMG 207 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g-~~v~v~E~~--------~~~GGr~~T~~~~ 207 (752)
+++|+|||||-.|.++|+.|++.| .+|+|.+++ ...++++.+...+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD 55 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVD 55 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEec
Confidence 368999999999999999999999 899999997 4556677766555
No 400
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=87.71 E-value=0.62 Score=53.71 Aligned_cols=35 Identities=37% Similarity=0.540 Sum_probs=32.0
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
...+|+|||+|.+||.|+..+...|.+|+++|.++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 36799999999999999999999999999998765
No 401
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.70 E-value=0.68 Score=50.10 Aligned_cols=33 Identities=33% Similarity=0.459 Sum_probs=29.9
Q ss_pred CcEEEECCChhHHHHHHHHHhCC--CeEEEEcCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFG--FKVVVLEGRS 195 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g--~~v~v~E~~~ 195 (752)
++|.|||+|..|.++|+.|+..| .+|++++.+.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 37999999999999999999999 5899999865
No 402
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=87.52 E-value=0.62 Score=51.25 Aligned_cols=33 Identities=24% Similarity=0.487 Sum_probs=30.9
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
++|.|||.|-.||+.|.-|++.|++|+.+|...
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 589999999999999999999999999999865
No 403
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=87.50 E-value=0.58 Score=52.81 Aligned_cols=33 Identities=24% Similarity=0.453 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHHhCCCeEEEEcCCCC
Q 004458 164 SVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR 196 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~ 196 (752)
+|.|||.|..|+..|..|++.|++|++++.+..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999998653
No 404
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.45 E-value=0.78 Score=49.59 Aligned_cols=35 Identities=31% Similarity=0.362 Sum_probs=31.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
+.++|.|||+|..|.+.|..|.++|++|+++.++.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 34689999999999999999999999999999864
No 405
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=87.44 E-value=0.78 Score=44.63 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=29.0
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
++|.|||-|..|...|..|.+.|++|++++++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 589999999999999999999999999999764
No 406
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.20 E-value=0.69 Score=52.94 Aligned_cols=32 Identities=19% Similarity=0.447 Sum_probs=29.2
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGR 194 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~ 194 (752)
.++|+|+|.|.+|.+||..|.+ |.+|+|.|.+
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 4689999999999999999995 9999999954
No 407
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=87.17 E-value=0.79 Score=51.50 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=32.2
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
...+|+|+|+|..|+.+|..|...|.+|+++|.++
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 46799999999999999999999999999998865
No 408
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.05 E-value=0.83 Score=49.82 Aligned_cols=34 Identities=32% Similarity=0.287 Sum_probs=31.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
.++|.|||+|..|.+.|..|++.|++|+++.++.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3589999999999999999999999999998854
No 409
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=87.01 E-value=0.6 Score=52.16 Aligned_cols=39 Identities=26% Similarity=0.443 Sum_probs=32.6
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCC-CCCC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGR-SRPG 198 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~-~~~G 198 (752)
...++|||||||-||.-||...++.|.+.+++-.+ +.+|
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig 65 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIG 65 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeeccccccc
Confidence 45789999999999999999999999988887654 3444
No 410
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=86.96 E-value=0.66 Score=53.73 Aligned_cols=34 Identities=29% Similarity=0.426 Sum_probs=31.3
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
-.+|.|||+|..|...|..|++.|++|+++|.++
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3579999999999999999999999999999864
No 411
>PTZ00052 thioredoxin reductase; Provisional
Probab=86.90 E-value=0.82 Score=53.00 Aligned_cols=31 Identities=42% Similarity=0.605 Sum_probs=29.6
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEG 193 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~ 193 (752)
.+|+|||||..|+-.|..|++.|.+|+|+++
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 213 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVR 213 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEc
Confidence 5899999999999999999999999999986
No 412
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=86.77 E-value=0.82 Score=52.33 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=31.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCC-eEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGF-KVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~-~v~v~E~~~ 195 (752)
...+|+|||||.+|+-+|..|.+.|. +|+++++++
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 35799999999999999999999998 899998754
No 413
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=86.70 E-value=0.72 Score=53.26 Aligned_cols=31 Identities=32% Similarity=0.535 Sum_probs=29.4
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEG 193 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~ 193 (752)
.+|+|||||..|+-+|..|++.|.+|+|+++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 211 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVR 211 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEe
Confidence 5799999999999999999999999999986
No 414
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=86.60 E-value=0.93 Score=48.77 Aligned_cols=35 Identities=29% Similarity=0.506 Sum_probs=32.3
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
...+|+|||.|.+|..+|..|...|.+|++++++.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 35799999999999999999999999999998875
No 415
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=86.43 E-value=0.74 Score=53.41 Aligned_cols=35 Identities=26% Similarity=0.448 Sum_probs=31.8
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR 196 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~ 196 (752)
-.+|.|||+|..|...|..|+++|++|+++|.++.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 35799999999999999999999999999997653
No 416
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=86.39 E-value=1.2 Score=55.41 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=32.1
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
..++|+|||||.+|+-+|..+.+.|.+|+++.+++
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 46799999999999999999999999999998764
No 417
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=86.31 E-value=0.93 Score=49.10 Aligned_cols=33 Identities=27% Similarity=0.301 Sum_probs=30.4
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
++|.|||+|..|...|..|++.|++|+++++++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 479999999999999999999999999998753
No 418
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=86.26 E-value=0.77 Score=53.43 Aligned_cols=38 Identities=32% Similarity=0.480 Sum_probs=33.6
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhC-CCeEEEEcCCCCC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSF-GFKVVVLEGRSRP 197 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~-g~~v~v~E~~~~~ 197 (752)
...+|.||||||-||...|-.|++. ..+|+|+|+....
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 5689999999999999999999987 4799999996644
No 419
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=85.94 E-value=1.1 Score=47.92 Aligned_cols=34 Identities=29% Similarity=0.520 Sum_probs=30.9
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCC-eEEEEcCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGF-KVVVLEGRS 195 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~-~v~v~E~~~ 195 (752)
.++|+|||+|-+|-++|+.|.+.|. +|+|+++..
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 4689999999999999999999997 799998863
No 420
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=85.74 E-value=0.85 Score=55.68 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=31.1
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCe-EEEEcCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFK-VVVLEGRS 195 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~-v~v~E~~~ 195 (752)
.++|+|||||..|+-+|..|.+.|.+ |+|+++++
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 57999999999999999999999987 99998764
No 421
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=85.71 E-value=0.85 Score=52.80 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=30.7
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
++|.|||+|..|..-|..|++.|++|+|++.++
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 479999999999999999999999999999864
No 422
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=85.63 E-value=1 Score=50.92 Aligned_cols=35 Identities=34% Similarity=0.412 Sum_probs=30.5
Q ss_pred CcEEEECCChhHHHHHHHHHh--------------CCCeEEEEcCCCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMS--------------FGFKVVVLEGRSRP 197 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~--------------~g~~v~v~E~~~~~ 197 (752)
.+|+|||||.+|+-.|.+|+. .|.+|+|+|+.+++
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l 222 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV 222 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence 589999999999999999976 47899999987754
No 423
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=85.42 E-value=1.1 Score=48.14 Aligned_cols=35 Identities=26% Similarity=0.480 Sum_probs=32.3
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
..++|+|||.|-.|.+.|..|...|.+|++++++.
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 45799999999999999999999999999999865
No 424
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=85.09 E-value=0.85 Score=55.21 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=31.8
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
-.+|+|||||..|...|+.++..|++|+++|.++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 4689999999999999999999999999999875
No 425
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.08 E-value=1.1 Score=51.43 Aligned_cols=33 Identities=36% Similarity=0.635 Sum_probs=30.6
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGR 194 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~ 194 (752)
.++|.|+|.|.+|+++|..|.+.|++|++.++.
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 457999999999999999999999999999964
No 426
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.04 E-value=1.1 Score=48.80 Aligned_cols=32 Identities=31% Similarity=0.288 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 164 SVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
+|.|||+|-.|.+-|..|++.|++|+++.++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 69999999999999999999999999998743
No 427
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=85.03 E-value=1 Score=47.91 Aligned_cols=32 Identities=34% Similarity=0.425 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 164 SVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
+|.|||.|..|.+.|..|.+.|++|++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999998754
No 428
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=84.93 E-value=1.8 Score=37.29 Aligned_cols=33 Identities=36% Similarity=0.487 Sum_probs=29.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHhC-CCeEEEEcC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSF-GFKVVVLEG 193 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~-g~~v~v~E~ 193 (752)
..++++|+|+|..|..+|..|.+. +.+|.++++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 356899999999999999999998 678999977
No 429
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.73 E-value=1.1 Score=51.80 Aligned_cols=34 Identities=29% Similarity=0.445 Sum_probs=31.3
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
.++|.|||.|.+|+++|..|.+.|++|++.|.+.
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 4579999999999999999999999999999754
No 430
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=84.64 E-value=1.2 Score=45.92 Aligned_cols=34 Identities=41% Similarity=0.698 Sum_probs=30.0
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCe---EEEEcCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFK---VVVLEGR 194 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~---v~v~E~~ 194 (752)
+..+|+|+|||-+|..+|++|.+.|.+ +.|++++
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 457999999999999999999999974 8888875
No 431
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.46 E-value=1.1 Score=50.56 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=30.9
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
..+|.|||-|.+|+++|..|.+.|++|++.|.+.
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3579999999999999999999999999999654
No 432
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=84.39 E-value=1.2 Score=51.36 Aligned_cols=34 Identities=38% Similarity=0.577 Sum_probs=31.5
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
..+|+|+|+|..|+.++..+...|.+|+++|.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5799999999999999999999999999998865
No 433
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=84.29 E-value=0.97 Score=54.65 Aligned_cols=35 Identities=26% Similarity=0.295 Sum_probs=32.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
.-++|.|||||..|..-|+.++..|++|+++|.+.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 45689999999999999999999999999999875
No 434
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=83.95 E-value=1.4 Score=49.40 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=32.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
..++|+|||.|..|..+|..|+..|.+|+++|.++
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 46799999999999999999999999999999765
No 435
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=83.83 E-value=1.6 Score=47.58 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=31.4
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCC-eEEEEcCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGF-KVVVLEGRSR 196 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~-~v~v~E~~~~ 196 (752)
..+|+|||||-.|.+.|+.|+..|+ +++++|.++.
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 3689999999999999999999995 8999998664
No 436
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=83.76 E-value=4.1 Score=45.27 Aligned_cols=35 Identities=31% Similarity=0.602 Sum_probs=30.9
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCC---eEEEEcCC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGF---KVVVLEGR 194 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~---~v~v~E~~ 194 (752)
-+..+|+|.|||-||+++|.+|...|. +|.++|+.
T Consensus 197 l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~ 234 (432)
T COG0281 197 LKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRK 234 (432)
T ss_pred ccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecC
Confidence 457899999999999999999999997 57887775
No 437
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=83.69 E-value=1.7 Score=39.29 Aligned_cols=31 Identities=39% Similarity=0.560 Sum_probs=28.2
Q ss_pred EEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 165 VIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 165 v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
|+|+|.|-.|...|..|.+.+.+|+++|.++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7999999999999999999778999999976
No 438
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=83.59 E-value=1.3 Score=47.70 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=30.9
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGR 194 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~ 194 (752)
-++|.|||||..|-.-|+.++..|++|+++|.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 468999999999999999999988999999987
No 439
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=83.42 E-value=1.3 Score=41.66 Aligned_cols=33 Identities=33% Similarity=0.551 Sum_probs=29.4
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCC-eEEEEcCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGF-KVVVLEGR 194 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~-~v~v~E~~ 194 (752)
+.+|+|||+|-.|...|..|++.|+ +++|+|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 4689999999999999999999998 78999874
No 440
>PRK06223 malate dehydrogenase; Reviewed
Probab=83.38 E-value=1.6 Score=47.14 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=30.0
Q ss_pred CcEEEECCChhHHHHHHHHHhCCC-eEEEEcCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGF-KVVVLEGRS 195 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~-~v~v~E~~~ 195 (752)
++|+|||+|..|.+.|+.|+..|+ +|+++|...
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 589999999999999999999876 999999855
No 441
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=83.36 E-value=1.3 Score=49.63 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=28.3
Q ss_pred cEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 164 SVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
+|.|||.|..|+..|..|+. |++|+++|.+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence 69999999999999988875 99999999866
No 442
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=83.02 E-value=0.68 Score=50.50 Aligned_cols=38 Identities=29% Similarity=0.455 Sum_probs=35.4
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSRPGG 199 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG 199 (752)
..+.+|||||..||-.+---.+.|.+||++|..+.+||
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~ 248 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGG 248 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcc
Confidence 47899999999999999999999999999999998885
No 443
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.85 E-value=1.4 Score=50.35 Aligned_cols=33 Identities=30% Similarity=0.492 Sum_probs=30.5
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGR 194 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~ 194 (752)
.++|.|||.|-+|+++|..|.+.|++|++.|..
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~ 41 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDN 41 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence 458999999999999999999999999999964
No 444
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=82.85 E-value=1.2 Score=54.02 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=32.3
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
.-.+|.|||||..|...|+.++..|++|+++|.++
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 44689999999999999999999999999999876
No 445
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=82.83 E-value=1.7 Score=45.96 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=30.9
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
.++|+|+|+|-+|.++|+.|++.|++|+|+.++.
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5689999999999999999999999999998753
No 446
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=82.75 E-value=2 Score=42.93 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=30.2
Q ss_pred CCCcEEEECC-ChhHHHHHHHHHhCCCeEEEEcCC
Q 004458 161 NEGSVIIVGA-GLAGLAAAKQLMSFGFKVVVLEGR 194 (752)
Q Consensus 161 ~~~~v~ViGa-G~aGl~aA~~L~~~g~~v~v~E~~ 194 (752)
+.++|+|+|| |..|..+|..|.+.|++|+++.++
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3578999997 999999999999999999999654
No 447
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=82.62 E-value=1.7 Score=47.00 Aligned_cols=32 Identities=31% Similarity=0.490 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHHhCC--CeEEEEcCCC
Q 004458 164 SVIIVGAGLAGLAAAKQLMSFG--FKVVVLEGRS 195 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~g--~~v~v~E~~~ 195 (752)
+|+|||+|-.|.+.|+.|+..| .++++++.+.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 7999999999999999999999 5899999865
No 448
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=82.29 E-value=1.6 Score=47.22 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=29.3
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
++|.|+|+|..|...|+.|+++|.+|+++=+.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 479999999999999999999998888876654
No 449
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=82.18 E-value=3.6 Score=45.80 Aligned_cols=34 Identities=38% Similarity=0.498 Sum_probs=31.3
Q ss_pred CCCcEEEEC-CChhHHHHHHHHHhCCCeEEEEcCC
Q 004458 161 NEGSVIIVG-AGLAGLAAAKQLMSFGFKVVVLEGR 194 (752)
Q Consensus 161 ~~~~v~ViG-aG~aGl~aA~~L~~~g~~v~v~E~~ 194 (752)
...+|+||| .|..|-+.|..|.+.|++|++++++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 457899999 8999999999999999999999975
No 450
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=82.15 E-value=1.8 Score=44.33 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=28.4
Q ss_pred CcEEEEC-CChhHHHHHHHHHhCCCeEEEEcCC
Q 004458 163 GSVIIVG-AGLAGLAAAKQLMSFGFKVVVLEGR 194 (752)
Q Consensus 163 ~~v~ViG-aG~aGl~aA~~L~~~g~~v~v~E~~ 194 (752)
++|.||| +|..|.+.|..|.+.|++|+++.++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 3699997 7999999999999999999998653
No 451
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=81.95 E-value=1.6 Score=50.09 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=29.6
Q ss_pred CcEEEECCChhHHHHHHHHHhCC--CeEEEEcCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFG--FKVVVLEGRS 195 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g--~~v~v~E~~~ 195 (752)
++|+|||+|-.|+..|..|++.| ++|+.+|.+.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 57999999999999999999984 7899998755
No 452
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=81.89 E-value=2.4 Score=40.44 Aligned_cols=35 Identities=34% Similarity=0.453 Sum_probs=30.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCC-CeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFG-FKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g-~~v~v~E~~~ 195 (752)
+..+|+|||+|..|.+.|..|.+.| .+|+++.++.
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 3568999999999999999999996 7899998754
No 453
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=81.84 E-value=1.5 Score=46.90 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=29.4
Q ss_pred cEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 164 SVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
+|.|||.|..|...|..|.+.|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48999999999999999999999999998754
No 454
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=81.74 E-value=2 Score=47.12 Aligned_cols=35 Identities=37% Similarity=0.547 Sum_probs=31.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCC-eEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGF-KVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~-~v~v~E~~~ 195 (752)
...+|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 45789999999999999999999998 899998853
No 455
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=81.66 E-value=2 Score=48.42 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=32.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
..++|+|||.|..|..+|..|...|.+|+++|..+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 46789999999999999999999999999999865
No 456
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=81.64 E-value=2 Score=46.05 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=30.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCe-EEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFK-VVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~-v~v~E~~~ 195 (752)
+.++|+|+|||=+|.++|+.|++.|++ |+|+.++.
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 356899999999999999999999986 99998753
No 457
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=81.63 E-value=1.6 Score=44.41 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=32.3
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
..+.|.|||||..|.-.|.-.+..|++|.+++++.
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 45789999999999999999999999999999865
No 458
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=81.60 E-value=2.8 Score=48.14 Aligned_cols=36 Identities=17% Similarity=0.357 Sum_probs=31.7
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCC-eEEEEcCCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGF-KVVVLEGRSR 196 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~-~v~v~E~~~~ 196 (752)
..++|+|||+|..|+-+|..+.+.|. +|+|+++++.
T Consensus 281 ~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 281 EGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE 317 (467)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence 35799999999999999999999996 7999988653
No 459
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.51 E-value=1.7 Score=49.67 Aligned_cols=34 Identities=32% Similarity=0.590 Sum_probs=31.2
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
...|+|||.|-+|+++|..|.+.|++|++.|..+
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 4579999999999999999999999999999765
No 460
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=81.50 E-value=1.6 Score=49.99 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=31.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
..++|+|||+|.+|+=.|.+|.+.+.+|+++.++.
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 46899999999999999999999999999987643
No 461
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=81.44 E-value=1.4 Score=53.23 Aligned_cols=35 Identities=23% Similarity=0.233 Sum_probs=31.7
Q ss_pred CCCcEEEECCChhHHHHHHHHH-hCCCeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLM-SFGFKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~-~~g~~v~v~E~~~ 195 (752)
.-.+|.|||||..|..-|..++ ..|++|+++|.++
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 3568999999999999999999 8899999999865
No 462
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=81.40 E-value=1.9 Score=41.85 Aligned_cols=35 Identities=29% Similarity=0.428 Sum_probs=28.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
..+.|+|+|=|..|-.+|..|+..|.+|+|.|..+
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 36789999999999999999999999999999865
No 463
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=81.32 E-value=1.5 Score=52.91 Aligned_cols=35 Identities=26% Similarity=0.247 Sum_probs=31.3
Q ss_pred CCCcEEEECCChhHHHHHHHHH-hCCCeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLM-SFGFKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~-~~g~~v~v~E~~~ 195 (752)
.-.+|.|||||..|..-|..++ +.|++|+++|.++
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 3468999999999999999998 5899999999875
No 464
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=81.13 E-value=2.5 Score=40.11 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=29.4
Q ss_pred CcEEEECC-ChhHHHHHHHHHhCCC--eEEEEcCCC
Q 004458 163 GSVIIVGA-GLAGLAAAKQLMSFGF--KVVVLEGRS 195 (752)
Q Consensus 163 ~~v~ViGa-G~aGl~aA~~L~~~g~--~v~v~E~~~ 195 (752)
.+|+|||+ |-.|.+.|+.|...+. ++.+++...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 48999999 9999999999999875 799998874
No 465
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=80.79 E-value=2.4 Score=43.55 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=30.5
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEG 193 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~ 193 (752)
.+.++|+|||||-.++.=+..|.+.|.+|+|+-.
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap 56 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSK 56 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 3467999999999999999999999999999943
No 466
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=80.68 E-value=2.6 Score=42.68 Aligned_cols=34 Identities=32% Similarity=0.484 Sum_probs=30.8
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCC-eEEEEcCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGF-KVVVLEGR 194 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~-~v~v~E~~ 194 (752)
.+.+|+|||+|-.|..+|..|++.|+ +++++|..
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 46799999999999999999999997 78888874
No 467
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=80.64 E-value=1.9 Score=51.83 Aligned_cols=35 Identities=26% Similarity=0.502 Sum_probs=30.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCC-eEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGF-KVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~-~v~v~E~~~ 195 (752)
..++|+|||||.+|+-+|..|.+.|. +|+|+++++
T Consensus 322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 35799999999999999999999996 699998764
No 468
>PTZ00117 malate dehydrogenase; Provisional
Probab=80.59 E-value=2.4 Score=46.17 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=31.2
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCC-CeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFG-FKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g-~~v~v~E~~~ 195 (752)
+..+|+|||||-.|.+.|+.|+..| .+++++|.+.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 4569999999999999999999999 6899999765
No 469
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=80.50 E-value=2.3 Score=46.64 Aligned_cols=34 Identities=38% Similarity=0.606 Sum_probs=31.2
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCC-eEEEEcCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGF-KVVVLEGR 194 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~-~v~v~E~~ 194 (752)
...+|+|||+|-.|..+|..|++.|+ +++|+|..
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46799999999999999999999998 89999984
No 470
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.97 E-value=1.9 Score=48.43 Aligned_cols=31 Identities=23% Similarity=0.112 Sum_probs=28.4
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGR 194 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~ 194 (752)
++|.|||.|-+|+++|..|. .|++|++.|..
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~ 31 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDK 31 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCC
Confidence 36899999999999999999 99999999954
No 471
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=79.93 E-value=2.6 Score=44.93 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=31.2
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCC-CeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFG-FKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g-~~v~v~E~~~ 195 (752)
..++|+|+|+|-+|.++|+.|.+.| .+|+|+.++.
T Consensus 122 ~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 122 KGKRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 3568999999999999999999999 6899998754
No 472
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=79.85 E-value=1.4 Score=49.21 Aligned_cols=37 Identities=24% Similarity=0.424 Sum_probs=29.1
Q ss_pred CCcEEcCceEEEEEecCCcEEEEECCEEEEecEEEEcCC
Q 004458 368 GVPIFYEKTVNTIKYGNEGVEVIAGDQMFQADMVLCTVP 406 (752)
Q Consensus 368 gl~I~ln~~V~~I~~~~~gv~V~~~g~~~~AD~VV~AvP 406 (752)
|++|++++.|++|+.+ ++++..+++++.|+.+|.|+.
T Consensus 223 GV~v~l~~~Vt~v~~~--~v~~~~g~~~I~~~tvvWaaG 259 (405)
T COG1252 223 GVEVLLGTPVTEVTPD--GVTLKDGEEEIPADTVVWAAG 259 (405)
T ss_pred CCEEEcCCceEEECCC--cEEEccCCeeEecCEEEEcCC
Confidence 8999999999999764 455544444699999999984
No 473
>PLN02494 adenosylhomocysteinase
Probab=79.84 E-value=2.6 Score=47.97 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=32.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
..++|+|||.|..|..+|..|...|.+|+++|..+
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp 287 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDP 287 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 46899999999999999999999999999999865
No 474
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=79.72 E-value=2.7 Score=44.43 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=31.1
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCC-eEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGF-KVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~-~v~v~E~~~ 195 (752)
...+|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 46799999999999999999999994 899998754
No 475
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=79.42 E-value=2.6 Score=48.48 Aligned_cols=36 Identities=19% Similarity=0.127 Sum_probs=31.3
Q ss_pred CcEEEecccccCcCCcchHHHHHHHHHHHHHHHHHhhc
Q 004458 565 SRLFFAGEATTRQYPATMHGAYLSGLREASRILRATRV 602 (752)
Q Consensus 565 ~~L~fAGe~ts~~~~g~veGAl~SG~rAA~~Il~~l~~ 602 (752)
++||.+||.+.. +..+..|+..|..||..|...+..
T Consensus 431 ~gVfa~GD~~~g--~~~~~~Av~~G~~AA~~i~~~L~g 466 (471)
T PRK12810 431 PKVFAAGDMRRG--QSLVVWAIAEGRQAARAIDAYLMG 466 (471)
T ss_pred CCEEEccccCCC--chhHHHHHHHHHHHHHHHHHHHhc
Confidence 789999999873 456788999999999999999864
No 476
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=79.41 E-value=2 Score=48.95 Aligned_cols=34 Identities=32% Similarity=0.432 Sum_probs=31.3
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR 196 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~ 196 (752)
++|+|+|+|..|...|..|.+.|++|+++|+++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 3799999999999999999999999999998653
No 477
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.30 E-value=2.5 Score=48.06 Aligned_cols=34 Identities=29% Similarity=0.540 Sum_probs=31.3
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
.++|.|||-|-+|++++..|++.|++|++.|...
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~ 39 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI 39 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 4579999999999999999999999999999754
No 478
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=79.23 E-value=2.4 Score=45.54 Aligned_cols=33 Identities=21% Similarity=0.436 Sum_probs=30.4
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
.+|.|||.|..|...|..|.+.|++|++++++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 379999999999999999999999999998754
No 479
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.00 E-value=5.7 Score=42.68 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=31.5
Q ss_pred CCCcEEEECCC-hhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 161 NEGSVIIVGAG-LAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG-~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
..++|+|||.| +.|.-.|..|.+.|+.|+++.+..
T Consensus 158 ~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t 193 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS 193 (301)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC
Confidence 46799999996 999999999999999999997654
No 480
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=78.90 E-value=2.7 Score=48.61 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=32.1
Q ss_pred cccCCcEEEecccccCcCCcchHHHHHHHHHHHHHHHHHhhc
Q 004458 561 ESVGSRLFFAGEATTRQYPATMHGAYLSGLREASRILRATRV 602 (752)
Q Consensus 561 ~pv~~~L~fAGe~ts~~~~g~veGAl~SG~rAA~~Il~~l~~ 602 (752)
+.+ ++||.|||.+.. +..+.-|+..|..||..|...+..
T Consensus 442 Ts~-~gVfAaGD~~~g--~~~~~~Av~~G~~AA~~i~~~L~g 480 (485)
T TIGR01317 442 TSI-PGVFAAGDCRRG--QSLIVWAINEGRKAAAAVDRYLMG 480 (485)
T ss_pred ECC-CCEEEeeccCCC--cHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344 789999998863 556778999999999999998854
No 481
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=78.88 E-value=3.1 Score=45.13 Aligned_cols=34 Identities=26% Similarity=0.534 Sum_probs=30.0
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCC--eEEEEcCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGF--KVVVLEGRS 195 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~--~v~v~E~~~ 195 (752)
..+|+|||+|-.|.++|+.|...|. +++|+|.+.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4699999999999999999998875 699999754
No 482
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=78.88 E-value=2.5 Score=40.03 Aligned_cols=32 Identities=34% Similarity=0.577 Sum_probs=27.8
Q ss_pred EEEECCChhHHHHHHHHHhCCCeEEEEcCCCC
Q 004458 165 VIIVGAGLAGLAAAKQLMSFGFKVVVLEGRSR 196 (752)
Q Consensus 165 v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~~ 196 (752)
++|+|+|..+.+.|..++..|++|+|+|-++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999998753
No 483
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=78.86 E-value=2.3 Score=48.45 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=32.7
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
..++|+|||+|-||...|-+|++.|.+|+++=+++
T Consensus 174 ~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~ 208 (443)
T COG2072 174 RGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSP 208 (443)
T ss_pred CCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCC
Confidence 46899999999999999999999999999998876
No 484
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=78.76 E-value=2.4 Score=45.38 Aligned_cols=33 Identities=27% Similarity=0.508 Sum_probs=30.1
Q ss_pred CcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 163 GSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 163 ~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
++|.|||.|..|...|..|++.|++|++++++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 479999999999999999999999999998754
No 485
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=78.65 E-value=2.7 Score=49.02 Aligned_cols=34 Identities=29% Similarity=0.329 Sum_probs=31.0
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGR 194 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~ 194 (752)
..++|+|+|+|-+|.++|+.|++.|++|+++.+.
T Consensus 378 ~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~ 411 (529)
T PLN02520 378 AGKLFVVIGAGGAGKALAYGAKEKGARVVIANRT 411 (529)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4578999999999999999999999999999774
No 486
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=78.61 E-value=1.9 Score=46.03 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=30.8
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhC-CC-eEEEEcCCC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSF-GF-KVVVLEGRS 195 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~-g~-~v~v~E~~~ 195 (752)
.+.++|+|||||-+|++.|..+.+. |. +|.|+|-.+
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 4678999999999999999999875 43 799998765
No 487
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=78.56 E-value=2.9 Score=44.65 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=30.4
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCC-eEEEEcCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGF-KVVVLEGRS 195 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~-~v~v~E~~~ 195 (752)
.++|+|||+|=+|-++|+.|.+.|+ +|+|+.+..
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~ 159 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGVTDITVINRNP 159 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 5689999999999999999999997 699997753
No 488
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=78.48 E-value=77 Score=37.40 Aligned_cols=40 Identities=18% Similarity=0.275 Sum_probs=30.9
Q ss_pred cc-cCCcEEEecccccCcCCc-------chHHHHHHHHHHHHHHHHHhh
Q 004458 561 ES-VGSRLFFAGEATTRQYPA-------TMHGAYLSGLREASRILRATR 601 (752)
Q Consensus 561 ~p-v~~~L~fAGe~ts~~~~g-------~veGAl~SG~rAA~~Il~~l~ 601 (752)
++ + +|||-|||.++.+..| .+-+|+..|.+|+..+.+.+.
T Consensus 357 t~~I-pGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 404 (566)
T PRK06452 357 NPDI-VGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFLK 404 (566)
T ss_pred cCCc-CCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 45 7 9999999987532222 578899999999999887664
No 489
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=78.26 E-value=2.3 Score=48.15 Aligned_cols=32 Identities=31% Similarity=0.455 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 164 SVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
+|.|||.|-+|+++|..|.+.|++|++.|...
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~ 32 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKP 32 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCC
Confidence 48999999999999999999999999999754
No 490
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=78.23 E-value=3.4 Score=44.90 Aligned_cols=35 Identities=26% Similarity=0.496 Sum_probs=31.0
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCC--eEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGF--KVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~--~v~v~E~~~ 195 (752)
...+|+|||+|-.|-++|+.|...|. +++++|.+.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 35699999999999999999999987 799999754
No 491
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=78.20 E-value=2.9 Score=41.21 Aligned_cols=31 Identities=29% Similarity=0.263 Sum_probs=28.4
Q ss_pred cEEEECCChhHHHHHHHHHhCCC-eEEEEcCC
Q 004458 164 SVIIVGAGLAGLAAAKQLMSFGF-KVVVLEGR 194 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~g~-~v~v~E~~ 194 (752)
+|+|||+|-.|...|..|++.|+ +++++|..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999999998 59999874
No 492
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=78.11 E-value=3.2 Score=43.22 Aligned_cols=34 Identities=32% Similarity=0.454 Sum_probs=30.0
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCC-eEEEEcCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGF-KVVVLEGR 194 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~-~v~v~E~~ 194 (752)
...+|+|||+|-.|..+|..|++.|. +++++|..
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 45799999999999999999999996 68888764
No 493
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=77.68 E-value=2.5 Score=52.11 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=31.3
Q ss_pred CCcEEEECCChhHHHH-HHHHHhCCCeEEEEcCCC
Q 004458 162 EGSVIIVGAGLAGLAA-AKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~a-A~~L~~~g~~v~v~E~~~ 195 (752)
.++|.|||.|-+|+++ |..|.+.|++|++.|.+.
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~ 38 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSE 38 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCC
Confidence 4579999999999999 999999999999999765
No 494
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=77.56 E-value=3.7 Score=38.78 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=29.0
Q ss_pred cEEEECCChhHHHHHHHHHhCCC-eEEEEcCCC
Q 004458 164 SVIIVGAGLAGLAAAKQLMSFGF-KVVVLEGRS 195 (752)
Q Consensus 164 ~v~ViGaG~aGl~aA~~L~~~g~-~v~v~E~~~ 195 (752)
+|+|||+|-.|...|..|.+.|+ +++|++...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999998 799998753
No 495
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=77.47 E-value=3.5 Score=44.08 Aligned_cols=34 Identities=38% Similarity=0.431 Sum_probs=30.2
Q ss_pred CCcEEEECCChhHHHHHHHHHhCCC-eEEEEcCCC
Q 004458 162 EGSVIIVGAGLAGLAAAKQLMSFGF-KVVVLEGRS 195 (752)
Q Consensus 162 ~~~v~ViGaG~aGl~aA~~L~~~g~-~v~v~E~~~ 195 (752)
.++|+|+|||=++-++|+.|.+.|+ +++|+.+..
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 161 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 5689999999999999999999997 688997753
No 496
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=77.28 E-value=3.4 Score=42.17 Aligned_cols=34 Identities=26% Similarity=0.278 Sum_probs=30.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCC-eEEEEcCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGF-KVVVLEGR 194 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~-~v~v~E~~ 194 (752)
...+|+|||+|-.|...|..|++.|. +++++|..
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46799999999999999999999998 48888874
No 497
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=77.10 E-value=2.7 Score=45.20 Aligned_cols=31 Identities=32% Similarity=0.397 Sum_probs=28.3
Q ss_pred EEEECCChhHHHHHHHHHhCCC-eEEEEcCCC
Q 004458 165 VIIVGAGLAGLAAAKQLMSFGF-KVVVLEGRS 195 (752)
Q Consensus 165 v~ViGaG~aGl~aA~~L~~~g~-~v~v~E~~~ 195 (752)
|.|||+|..|...|+.|+..|. +|+++|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 6899999999999999998876 999999864
No 498
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=77.08 E-value=3.7 Score=42.94 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=30.3
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCC-eEEEEcCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGF-KVVVLEGR 194 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~-~v~v~E~~ 194 (752)
...+|+|||+|-.|..+|..|+..|. +++|++..
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46799999999999999999999997 78888874
No 499
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=77.06 E-value=4.3 Score=39.44 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=29.1
Q ss_pred CCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 161 NEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 161 ~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
+.++|+|||-|--|.+-|..|.+.|++|+|-.+.+
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~ 37 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREG 37 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TT
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCC
Confidence 36799999999999999999999999999988754
No 500
>PLN02256 arogenate dehydrogenase
Probab=77.06 E-value=3.5 Score=44.53 Aligned_cols=36 Identities=25% Similarity=0.263 Sum_probs=31.9
Q ss_pred CCCCcEEEECCChhHHHHHHHHHhCCCeEEEEcCCC
Q 004458 160 ANEGSVIIVGAGLAGLAAAKQLMSFGFKVVVLEGRS 195 (752)
Q Consensus 160 ~~~~~v~ViGaG~aGl~aA~~L~~~g~~v~v~E~~~ 195 (752)
+...+|.|||.|..|-+.|..|.+.|++|++++.+.
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence 456789999999999999999999999999988753
Done!