BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004460
(752 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49756|RBM25_HUMAN RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE=1 SV=3
Length = 843
Score = 114 bits (284), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 72/104 (69%)
Query: 644 KQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSST 703
K LI+ IP K ELF+Y ++W++ D + R+RPWI+KKI E++GEEE TLVD++ S
Sbjct: 739 KSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKV 798
Query: 704 QDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETGLA 747
H +L+ + +LD+EAE+F++KMWR+LI+E + + GL
Sbjct: 799 MAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIYETEAKKIGLV 842
Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 67/139 (48%), Gaps = 23/139 (16%)
Query: 28 IPGVRPIMPPVVRPVPLPTVTPAEK---------------------PQTKVYVGKIAPTA 66
IP IM P V +PTV+ K P T V+VG I+ A
Sbjct: 40 IPVPMSIMAPAPT-VLVPTVSMVGKHLGARKDHPGLKAKENDENCGPTTTVFVGNISEKA 98
Query: 67 DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126
+ +L CG V SWKR Q S G + FGFCE++ E LRALRLL+ I ++L
Sbjct: 99 SDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRALRLLHDLQIGEKKL 157
Query: 127 MLKVDQATREYLERYVDKK 145
++KVD T+ L+ + KK
Sbjct: 158 LVKVDAKTKAQLDEWKAKK 176
>sp|B2RY56|RBM25_MOUSE RNA-binding protein 25 OS=Mus musculus GN=Rbm25 PE=1 SV=2
Length = 838
Score = 113 bits (283), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 72/104 (69%)
Query: 644 KQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSST 703
K LI+ IP K ELF+Y ++W++ D + R+RPWI+KKI E++GEEE TLVD++ S
Sbjct: 734 KSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKV 793
Query: 704 QDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETGLA 747
H +L+ + +LD+EAE+F++KMWR+LI+E + + GL
Sbjct: 794 MAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIYETEAKKIGLV 837
Score = 79.7 bits (195), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 70/149 (46%), Gaps = 23/149 (15%)
Query: 28 IPGVRPIMPPVVRPVPLPTVTPAEK---------------------PQTKVYVGKIAPTA 66
IP IM P V +PTV+ K P T V+VG I+ A
Sbjct: 40 IPVPMSIMAPAPT-VLVPTVSMVGKHLGARKDHPGLKLKENDENCGPTTTVFVGNISEKA 98
Query: 67 DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126
+ +L CG V SWKR Q S G + FGFCE++ E LRALRLL+ I ++L
Sbjct: 99 SDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRALRLLHDLQIGEKKL 157
Query: 127 MLKVDQATREYLERYVDKKTENTKKLKET 155
++KVD T+ L+ + KK N ET
Sbjct: 158 LVKVDAKTKAQLDEWKAKKKANGNARPET 186
>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
(isolate 3D7) GN=PF13_0198 PE=3 SV=1
Length = 3130
Score = 55.5 bits (132), Expect = 1e-06, Method: Composition-based stats.
Identities = 44/186 (23%), Positives = 99/186 (53%), Gaps = 5/186 (2%)
Query: 274 ETTSDTKASDHDRPETSSPDRSRVHDRRGRDKERDLKRE---KEREIDRYEREAERERVR 330
+ + K + +R E ++ + + R ++ L++E K +E +R ++E E +R
Sbjct: 2748 QKEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQE 2807
Query: 331 KEREQRRKIEEAEREYERCLKDWEYREREREKERQYEKEKEKERERKRKKEILYDEEEDE 390
+ER +R K E+ ++E E ++ E ++E +RQ ++ +KE E KR+++ + ++ E
Sbjct: 2808 QERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQERLERKKIE 2867
Query: 391 DDSRKRWRRSVLEEKRRKRIREKEEDLADEVREEEEIAVAKRRAEEEQLQQQQRDALKLL 450
R++ +S LE K I+++ DE+ + ++I + R + E++ + ++ L L
Sbjct: 2868 LAEREQHIKSKLESDMVKIIKDELTKEKDEIIKNKDIKL--RHSLEQKWLKHLQNILSLK 2925
Query: 451 SDNAVN 456
D+ +N
Sbjct: 2926 IDSLLN 2931
Score = 51.2 bits (121), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 86/151 (56%), Gaps = 7/151 (4%)
Query: 309 LKREKEREIDRYE--REAERERVRKER-EQRRKIEEAEREYERCLKDWEYREREREKERQ 365
LKR+++ + + E + E+ER+ +E+ EQ +K EE +R+ + L+ E +R+ ++ Q
Sbjct: 2739 LKRQEQERLQKEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQ 2798
Query: 366 YEKE---KEKERERKRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKRIREKEEDLADEVR 422
E+E +E+ER + K+E L EEE + ++R ++ +++ + +KEE+L + +
Sbjct: 2799 KEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQ 2858
Query: 423 EEEEIAVAKRRAEEEQLQQQ-QRDALKLLSD 452
E E + E+ ++ + + D +K++ D
Sbjct: 2859 ERLERKKIELAEREQHIKSKLESDMVKIIKD 2889
>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
Length = 2876
Score = 40.8 bits (94), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 75/126 (59%), Gaps = 16/126 (12%)
Query: 280 KASDHDRPETSSPDRSRVHDRRGRDKERDLKREKEREIDRYE-REAERERVR-----KER 333
K + DR + DR +V D+ RDK R+ R+K RE DR + RE +RE++R K R
Sbjct: 836 KGQEKDRDKVREKDRDKVRDK-DRDKVREKDRDKVREKDRDKLREKDREKIRERDRDKGR 894
Query: 334 EQRR-----KIEEAEREYERCLKDWEYREREREKERQYEKEKEKERERKRKKEILYDEEE 388
E+ R K E ++E ER LKD R++EREK R +++++++E+KR KE+ D++
Sbjct: 895 EKDRDKEQVKTREKDQEKER-LKD---RDKEREKVRDKGRDRDRDQEKKRNKELTEDKQA 950
Query: 389 DEDDSR 394
E SR
Sbjct: 951 PEQRSR 956
Score = 37.7 bits (86), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 89/141 (63%), Gaps = 13/141 (9%)
Query: 301 RGRDKERDLKREKEREIDRYEREAERERVRKEREQRRKIEEAEREYERCLKDWEYRERER 360
+GR+K++D + EK RE DR ++E E+ R E++Q +++E+ RE KD + +E E+
Sbjct: 788 KGREKDQDKELEKGREKDR-DKEMEKAR---EKDQDKELEKG-RE-----KDQD-KELEK 836
Query: 361 EKERQYEKEKEKERERKRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKRIREKEEDLADE 420
+E+ +K +EK+R++ R K+ E+D D R++ R L EK R++IRE++ D E
Sbjct: 837 GQEKDRDKVREKDRDKVRDKDRDKVREKDRDKVREK-DRDKLREKDREKIRERDRDKGRE 895
Query: 421 V-REEEEIAVAKRRAEEEQLQ 440
R++E++ ++ E+E+L+
Sbjct: 896 KDRDKEQVKTREKDQEKERLK 916
>sp|P33332|SEC3_YEAST Exocyst complex component SEC3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SEC3 PE=1 SV=1
Length = 1336
Score = 40.4 bits (93), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 95/181 (52%), Gaps = 41/181 (22%)
Query: 306 ERDLKREKEREIDRYEREAERERVRKEREQRRKIEEAEREYERCLKDWEYREREREKERQ 365
++ L+ +KE E+ R E E R+++E +R + E E++R L+ E E++RQ
Sbjct: 348 QKRLQLQKENEMKRLEEE---RRIKQEERKR----QMELEHQRQLE-------EEERKRQ 393
Query: 366 YEKEKEKERERKRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKRIREKEEDLADEVREEE 425
E E +K+ E KR+++ E++ R + R +LE +R++R E++ A+ +++EE
Sbjct: 394 MELEAKKQMELKRQRQF-------EEEQRLKKERELLEIQRKQR----EQETAERLKKEE 442
Query: 426 EIAVA---------KRRAEEEQLQQQQRDAL-KLLSDNAVNGSLAEESAVESKGDPSSQN 475
+ A+A + + + E Q+ + LL D +N LAE E++ P+ QN
Sbjct: 443 QEALAKKEEEEKSKRNKVDNESYTQEINGKVDNLLED--LNAVLAE----ETETTPTMQN 496
Query: 476 G 476
G
Sbjct: 497 G 497
>sp|C0H5F4|RBP2B_PLAF7 Reticulocyte binding protein 2 homolog b OS=Plasmodium falciparum
(isolate 3D7) GN=Rh2b PE=3 SV=1
Length = 3179
Score = 35.8 bits (81), Expect = 1.3, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 83/147 (56%), Gaps = 7/147 (4%)
Query: 354 EYREREREKERQYEKEKEKERERKRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKRI-RE 412
E EREK+ Q +KE K++E++R+++ +E + + + L+ + ++R+ RE
Sbjct: 2629 EKERLEREKQEQLKKEALKKQEQERQEQQQKEEALKRQEQERLQKEEELKRQEQERLERE 2688
Query: 413 KEEDLA--DEVREEEEIAVAKRRAEEEQLQQQQRDALKLLSDNAVNGSLAEESAVESKGD 470
K+E L +E+R++E+ +R +E L++Q++ +++++ V G E + + +
Sbjct: 2689 KQEQLQKEEELRKKEQEKQQQRNIQE--LEEQKKP--EIINEALVKGDKILEGSDQRNME 2744
Query: 471 PSSQNGNGDESTNVPIAASDMRQSGNV 497
S N + D + N PI+ S++ +S ++
Sbjct: 2745 LSKPNVSMDNTNNSPISNSEITESDDI 2771
>sp|Q9QXL2|KI21A_MOUSE Kinesin-like protein KIF21A OS=Mus musculus GN=Kif21a PE=1 SV=2
Length = 1672
Score = 34.7 bits (78), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 95/206 (46%), Gaps = 20/206 (9%)
Query: 298 HDRRGRDKERDLKREKEREIDRYEREAERERVRKEREQR--------RKIEEAEREYERC 349
H R ERD + ++ Y E + +V+ E E++ ++++ A++E+ R
Sbjct: 689 HKIRDTQLERDQVLQNLGSVESYSEEKAK-KVKCEYEKKLHAMNKELQRLQTAQKEHARL 747
Query: 350 LKDWEYREREREKERQ--YEKEKEKERERKRKKEILYDEEEDEDDSRKRWRRSVLEEKRR 407
LK+ E++ +K +Q E +K K R K+ KE E+E + R R + + K+
Sbjct: 748 LKNQSQYEKQLKKLQQDVMEMKKTKVRLMKQMKE----EQEKARLTESRRNREIAQLKKD 803
Query: 408 KRIREKEEDLADEVREEEEIAVAKRRAEEEQLQQQQRDALKLLSDNAVNGSLAEESAVES 467
+R R+ + L + + +E+ + ++ E L++Q R +SD + S+ ES
Sbjct: 804 QRKRDHQLRLLEAQKRNQEVVLRRKTEEVTALRRQVRP----MSDKVAGKVTRKLSSSES 859
Query: 468 KG-DPSSQNGNGDESTNVPIAASDMR 492
D S +G+ T+ P MR
Sbjct: 860 PAPDTGSSAASGEADTSRPGTQQKMR 885
>sp|Q7Z4S6|KI21A_HUMAN Kinesin-like protein KIF21A OS=Homo sapiens GN=KIF21A PE=1 SV=2
Length = 1674
Score = 34.3 bits (77), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 77/157 (49%), Gaps = 15/157 (9%)
Query: 298 HDRRGRDKERDLKREKEREIDRYEREAERERVRKEREQR--------RKIEEAEREYERC 349
H R ERD + ++ Y E + +VR E E++ ++++ A++E+ R
Sbjct: 687 HKIRDTQLERDQVLQNLGSVESYSEEKAK-KVRSEYEKKLQAMNKELQRLQAAQKEHARL 745
Query: 350 LKDWEYREREREKERQ--YEKEKEKERERKRKKEILYDEEEDEDDSRKRWRRSVLEEKRR 407
LK+ E++ +K +Q E +K K R K+ KE E+E + R R + + K+
Sbjct: 746 LKNQSQYEKQLKKLQQDVMEMKKTKVRLMKQMKE----EQEKARLTESRRNREIAQLKKD 801
Query: 408 KRIREKEEDLADEVREEEEIAVAKRRAEEEQLQQQQR 444
+R R+ + L + + +E+ + ++ E L++Q R
Sbjct: 802 QRKRDHQLRLLEAQKRNQEVVLRRKTEEVTALRRQVR 838
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.129 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 304,860,916
Number of Sequences: 539616
Number of extensions: 15298058
Number of successful extensions: 247820
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2156
Number of HSP's successfully gapped in prelim test: 4960
Number of HSP's that attempted gapping in prelim test: 105581
Number of HSP's gapped (non-prelim): 58707
length of query: 752
length of database: 191,569,459
effective HSP length: 125
effective length of query: 627
effective length of database: 124,117,459
effective search space: 77821646793
effective search space used: 77821646793
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 65 (29.6 bits)