Query 004460
Match_columns 752
No_of_seqs 415 out of 1631
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 23:46:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004460.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004460hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2253 U1 snRNP complex, subu 100.0 1.3E-67 2.7E-72 587.1 32.6 633 15-747 4-668 (668)
2 PF01480 PWI: PWI domain; Int 99.8 7.5E-19 1.6E-23 152.4 5.8 68 674-741 2-74 (77)
3 smart00311 PWI PWI, domain in 99.7 1.4E-17 3E-22 143.4 8.2 70 671-740 4-73 (74)
4 KOG2146 Splicing coactivator S 99.7 9.2E-18 2E-22 172.4 3.4 89 655-747 28-119 (354)
5 KOG4661 Hsp27-ERE-TATA-binding 99.5 3.4E-12 7.3E-17 141.2 23.6 81 52-132 403-483 (940)
6 PLN03134 glycine-rich RNA-bind 99.5 2.2E-13 4.8E-18 131.9 11.5 82 52-133 32-113 (144)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 3.9E-13 8.5E-18 146.8 14.4 82 52-133 267-348 (352)
8 KOG0121 Nuclear cap-binding pr 99.4 1.5E-13 3.2E-18 127.5 7.3 82 52-133 34-115 (153)
9 TIGR01659 sex-lethal sex-letha 99.4 3.8E-12 8.2E-17 139.8 15.5 83 51-133 104-186 (346)
10 KOG0113 U1 small nuclear ribon 99.4 4.9E-12 1.1E-16 131.8 13.1 83 51-133 98-180 (335)
11 PF00076 RRM_1: RNA recognitio 99.4 3.9E-12 8.4E-17 105.7 9.7 70 57-127 1-70 (70)
12 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.3 6.6E-12 1.4E-16 137.2 11.3 81 53-133 2-82 (352)
13 KOG0122 Translation initiation 99.3 1.6E-11 3.5E-16 125.1 12.7 84 50-133 185-268 (270)
14 TIGR01645 half-pint poly-U bin 99.2 5.8E-11 1.3E-15 137.8 12.4 82 52-133 202-283 (612)
15 PLN03213 repressor of silencin 99.2 6.5E-11 1.4E-15 129.6 11.5 91 52-148 8-100 (759)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.2 1.3E-10 2.9E-15 133.4 14.6 82 52-133 293-374 (509)
17 KOG0149 Predicted RNA-binding 99.2 2.5E-11 5.5E-16 123.2 7.4 82 50-132 8-89 (247)
18 TIGR01645 half-pint poly-U bin 99.2 4.5E-11 9.7E-16 138.7 10.2 79 52-130 105-183 (612)
19 KOG0125 Ataxin 2-binding prote 99.2 1.2E-10 2.6E-15 122.8 12.3 81 52-134 94-174 (376)
20 PF14259 RRM_6: RNA recognitio 99.2 9.1E-11 2E-15 98.5 9.3 70 57-127 1-70 (70)
21 KOG0126 Predicted RNA-binding 99.2 3.7E-12 7.9E-17 124.6 0.3 82 51-132 32-113 (219)
22 PLN03120 nucleic acid binding 99.2 9.1E-11 2E-15 122.6 10.6 76 54-133 4-79 (260)
23 KOG0117 Heterogeneous nuclear 99.1 2.2E-10 4.7E-15 125.0 10.9 83 52-134 81-164 (506)
24 smart00362 RRM_2 RNA recogniti 99.1 3.7E-10 8.1E-15 92.3 9.7 71 56-128 1-71 (72)
25 TIGR01659 sex-lethal sex-letha 99.1 2.2E-10 4.7E-15 126.0 10.8 81 53-133 192-274 (346)
26 TIGR01622 SF-CC1 splicing fact 99.1 2.3E-10 5E-15 129.7 11.3 79 54-132 186-264 (457)
27 KOG0108 mRNA cleavage and poly 99.1 1.4E-10 3E-15 129.9 9.1 82 55-136 19-100 (435)
28 KOG0145 RNA-binding protein EL 99.1 4.4E-10 9.6E-15 115.2 11.6 83 51-133 275-357 (360)
29 KOG0146 RNA-binding protein ET 99.1 1E-10 2.2E-15 120.2 6.8 82 50-131 281-362 (371)
30 KOG0107 Alternative splicing f 99.1 2.1E-10 4.6E-15 111.9 7.9 76 53-133 9-84 (195)
31 KOG4207 Predicted splicing fac 99.1 1.6E-10 3.6E-15 115.1 7.2 81 53-133 12-92 (256)
32 COG0724 RNA-binding proteins ( 99.1 5E-10 1.1E-14 114.0 10.4 80 54-133 115-194 (306)
33 TIGR01622 SF-CC1 splicing fact 99.1 6.2E-10 1.3E-14 126.3 11.8 82 50-132 85-166 (457)
34 TIGR01628 PABP-1234 polyadenyl 99.1 7.2E-10 1.6E-14 129.3 12.5 84 52-136 283-366 (562)
35 PLN03121 nucleic acid binding 99.1 5.7E-10 1.2E-14 115.1 10.2 76 53-132 4-79 (243)
36 TIGR01628 PABP-1234 polyadenyl 99.1 5.4E-10 1.2E-14 130.3 11.1 78 55-132 1-78 (562)
37 smart00360 RRM RNA recognition 99.1 9.4E-10 2E-14 89.5 9.1 70 59-128 1-70 (71)
38 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 2.1E-09 4.6E-14 123.3 15.1 78 51-133 272-350 (481)
39 KOG0145 RNA-binding protein EL 99.0 1.3E-09 2.9E-14 111.7 11.1 88 51-138 38-125 (360)
40 TIGR01648 hnRNP-R-Q heterogene 99.0 1.1E-09 2.4E-14 127.0 10.9 78 53-131 57-135 (578)
41 KOG0130 RNA-binding protein RB 99.0 6.7E-10 1.5E-14 104.2 7.1 83 51-133 69-151 (170)
42 KOG0124 Polypyrimidine tract-b 99.0 2.3E-10 5.1E-15 121.6 4.5 78 54-131 113-190 (544)
43 KOG0131 Splicing factor 3b, su 99.0 5.1E-10 1.1E-14 109.9 6.2 79 53-131 8-86 (203)
44 KOG0148 Apoptosis-promoting RN 99.0 9.6E-10 2.1E-14 113.6 7.9 80 54-133 62-141 (321)
45 cd00590 RRM RRM (RNA recogniti 99.0 4.5E-09 9.8E-14 86.3 10.2 74 56-130 1-74 (74)
46 KOG0114 Predicted RNA-binding 98.9 9.1E-09 2E-13 92.8 11.4 83 53-138 17-99 (124)
47 KOG0148 Apoptosis-promoting RN 98.9 3.1E-09 6.8E-14 109.9 9.2 78 50-133 160-237 (321)
48 TIGR01642 U2AF_lg U2 snRNP aux 98.9 5.8E-09 1.2E-13 119.9 12.5 75 49-130 170-256 (509)
49 KOG0111 Cyclophilin-type pepti 98.9 6E-10 1.3E-14 111.9 3.7 82 53-134 9-90 (298)
50 KOG0144 RNA-binding protein CU 98.9 4.8E-09 1E-13 114.2 10.3 90 49-138 29-121 (510)
51 KOG0415 Predicted peptidyl pro 98.9 2.3E-09 5E-14 113.9 7.3 86 51-136 236-321 (479)
52 KOG0127 Nucleolar protein fibr 98.9 4E-09 8.6E-14 117.5 8.7 86 53-139 116-201 (678)
53 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.8 2.2E-08 4.8E-13 115.0 10.5 75 53-133 1-77 (481)
54 KOG0124 Polypyrimidine tract-b 98.8 1E-08 2.2E-13 109.3 6.9 95 37-131 186-287 (544)
55 KOG0105 Alternative splicing f 98.8 1.2E-08 2.7E-13 100.4 6.9 80 52-134 4-83 (241)
56 KOG0127 Nucleolar protein fibr 98.8 3.3E-08 7.1E-13 110.3 10.9 85 51-135 289-379 (678)
57 TIGR01648 hnRNP-R-Q heterogene 98.7 2.9E-08 6.4E-13 115.3 10.5 73 53-133 232-306 (578)
58 smart00361 RRM_1 RNA recogniti 98.7 6E-08 1.3E-12 82.3 8.5 61 68-128 2-69 (70)
59 KOG0109 RNA-binding protein LA 98.7 1.7E-08 3.7E-13 105.4 6.0 71 55-133 3-73 (346)
60 KOG0147 Transcriptional coacti 98.7 1.8E-08 3.9E-13 112.8 6.2 79 54-132 278-356 (549)
61 PF13893 RRM_5: RNA recognitio 98.7 9.7E-08 2.1E-12 77.1 8.6 56 71-131 1-56 (56)
62 KOG0144 RNA-binding protein CU 98.7 1.9E-08 4.1E-13 109.6 5.2 81 54-135 124-207 (510)
63 KOG4208 Nucleolar RNA-binding 98.6 9.6E-08 2.1E-12 95.9 8.2 85 50-134 45-130 (214)
64 KOG0117 Heterogeneous nuclear 98.6 1.1E-07 2.4E-12 104.1 8.0 74 53-134 258-331 (506)
65 KOG0109 RNA-binding protein LA 98.5 7E-08 1.5E-12 100.9 5.0 77 49-133 73-149 (346)
66 KOG4212 RNA-binding protein hn 98.5 2.4E-07 5.3E-12 101.0 9.1 80 52-132 42-122 (608)
67 KOG0131 Splicing factor 3b, su 98.5 1.3E-07 2.9E-12 93.2 6.0 81 52-132 94-175 (203)
68 KOG1457 RNA binding protein (c 98.5 9.3E-07 2E-11 89.6 11.9 84 52-135 32-119 (284)
69 KOG4206 Spliceosomal protein s 98.5 3.6E-07 7.7E-12 93.1 8.0 84 54-140 9-96 (221)
70 KOG0123 Polyadenylate-binding 98.4 5.3E-07 1.2E-11 100.2 8.8 79 52-133 74-152 (369)
71 KOG1548 Transcription elongati 98.4 6.3E-07 1.4E-11 95.8 8.4 81 52-133 132-220 (382)
72 KOG0110 RNA-binding protein (R 98.4 4.3E-07 9.2E-12 104.5 6.7 92 51-143 610-701 (725)
73 KOG0146 RNA-binding protein ET 98.3 1.2E-06 2.6E-11 90.7 7.8 83 53-136 18-103 (371)
74 KOG0153 Predicted RNA-binding 98.3 1.5E-06 3.3E-11 93.0 8.3 80 48-133 222-302 (377)
75 KOG0132 RNA polymerase II C-te 98.3 1.3E-06 2.8E-11 101.2 7.8 74 54-133 421-494 (894)
76 KOG0226 RNA-binding proteins [ 98.3 1.2E-06 2.5E-11 90.5 6.3 93 52-144 188-280 (290)
77 KOG0110 RNA-binding protein (R 98.3 1.8E-06 4E-11 99.4 8.2 77 55-132 516-596 (725)
78 KOG0116 RasGAP SH3 binding pro 98.3 4.6E-06 1E-10 93.5 10.9 76 53-129 287-362 (419)
79 KOG0151 Predicted splicing reg 98.2 3.4E-06 7.4E-11 96.9 9.1 84 50-133 170-256 (877)
80 KOG4205 RNA-binding protein mu 98.2 9.9E-07 2.1E-11 95.5 4.5 80 53-133 5-84 (311)
81 KOG0533 RRM motif-containing p 98.2 6.9E-06 1.5E-10 85.9 9.0 81 51-132 80-160 (243)
82 KOG4212 RNA-binding protein hn 98.2 4.3E-06 9.3E-11 91.6 7.7 77 50-131 532-608 (608)
83 KOG0123 Polyadenylate-binding 98.1 4.6E-06 1E-10 92.8 8.0 77 55-137 2-78 (369)
84 KOG4209 Splicing factor RNPS1, 98.1 4.2E-06 9.1E-11 87.4 5.9 82 50-132 97-178 (231)
85 KOG0120 Splicing factor U2AF, 98.1 6.4E-06 1.4E-10 93.6 6.9 84 50-133 285-368 (500)
86 KOG4205 RNA-binding protein mu 97.9 1.2E-05 2.7E-10 87.1 5.8 80 53-133 96-175 (311)
87 KOG4454 RNA binding protein (R 97.9 5.1E-06 1.1E-10 84.2 2.6 77 54-132 9-85 (267)
88 KOG0106 Alternative splicing f 97.8 1.6E-05 3.4E-10 81.7 4.3 71 55-133 2-72 (216)
89 PF04059 RRM_2: RNA recognitio 97.8 0.00018 3.9E-09 65.4 10.1 78 55-132 2-85 (97)
90 KOG4660 Protein Mei2, essentia 97.7 6.4E-05 1.4E-09 85.1 6.2 72 51-127 72-143 (549)
91 KOG1995 Conserved Zn-finger pr 97.6 0.00019 4.2E-09 77.7 8.8 82 51-132 63-152 (351)
92 KOG1190 Polypyrimidine tract-b 97.6 0.00066 1.4E-08 74.5 12.3 75 54-133 297-372 (492)
93 KOG2253 U1 snRNP complex, subu 97.4 0.0052 1.1E-07 71.3 17.7 34 510-544 514-547 (668)
94 KOG0147 Transcriptional coacti 97.3 9.9E-05 2.1E-09 83.5 2.1 84 50-134 175-258 (549)
95 KOG4676 Splicing factor, argin 97.3 0.00088 1.9E-08 73.2 8.8 83 55-137 8-93 (479)
96 KOG4849 mRNA cleavage factor I 97.2 0.00079 1.7E-08 72.5 6.8 95 51-145 77-174 (498)
97 PF11608 Limkain-b1: Limkain b 97.1 0.0018 3.9E-08 57.1 7.7 70 55-134 3-77 (90)
98 KOG1456 Heterogeneous nuclear 97.1 0.0083 1.8E-07 65.4 13.3 78 50-132 283-361 (494)
99 KOG4307 RNA binding protein RB 97.0 0.0034 7.4E-08 72.8 10.6 78 52-130 864-943 (944)
100 KOG1924 RhoA GTPase effector D 97.0 0.0011 2.4E-08 77.5 6.7 10 59-68 607-616 (1102)
101 KOG1457 RNA binding protein (c 96.9 0.0018 3.9E-08 66.3 6.1 66 52-121 208-273 (284)
102 KOG3152 TBP-binding protein, a 96.9 0.00071 1.5E-08 70.4 3.1 88 53-140 73-173 (278)
103 KOG1029 Endocytic adaptor prot 96.8 0.23 4.9E-06 59.0 23.2 12 219-230 257-268 (1118)
104 KOG4211 Splicing factor hnRNP- 96.7 0.0045 9.9E-08 69.6 8.5 75 53-131 9-83 (510)
105 KOG4210 Nuclear localization s 96.7 0.00083 1.8E-08 72.5 2.5 80 53-133 183-263 (285)
106 PF08777 RRM_3: RNA binding mo 96.7 0.0056 1.2E-07 56.5 7.6 86 54-145 1-93 (105)
107 KOG1924 RhoA GTPase effector D 96.7 0.0026 5.6E-08 74.6 6.1 6 397-402 985-990 (1102)
108 KOG2314 Translation initiation 96.4 0.0099 2.1E-07 67.8 8.5 77 52-129 56-139 (698)
109 KOG2416 Acinus (induces apopto 96.4 0.0037 7.9E-08 71.6 5.1 78 50-133 440-521 (718)
110 KOG4206 Spliceosomal protein s 96.3 0.019 4.2E-07 59.1 9.2 78 50-132 142-220 (221)
111 KOG4676 Splicing factor, argin 96.3 0.0029 6.2E-08 69.3 3.1 64 54-122 151-214 (479)
112 KOG1855 Predicted RNA-binding 96.2 0.0044 9.6E-08 68.6 4.4 79 43-121 220-311 (484)
113 COG5175 MOT2 Transcriptional r 96.0 0.022 4.7E-07 61.5 7.9 88 54-143 114-210 (480)
114 KOG0106 Alternative splicing f 95.9 0.0057 1.2E-07 63.2 3.2 70 51-128 96-165 (216)
115 KOG0129 Predicted RNA-binding 95.6 0.031 6.8E-07 63.5 7.8 63 52-114 368-431 (520)
116 KOG1548 Transcription elongati 95.4 0.076 1.7E-06 57.8 9.4 79 52-134 263-352 (382)
117 PF08952 DUF1866: Domain of un 95.4 0.068 1.5E-06 52.1 8.2 75 53-138 26-109 (146)
118 KOG4211 Splicing factor hnRNP- 95.3 0.054 1.2E-06 61.3 8.1 75 53-129 102-177 (510)
119 KOG0129 Predicted RNA-binding 95.0 0.13 2.8E-06 58.7 10.2 65 52-116 257-326 (520)
120 PF05172 Nup35_RRM: Nup53/35/4 94.9 0.13 2.8E-06 47.2 8.1 77 54-132 6-90 (100)
121 KOG1190 Polypyrimidine tract-b 94.5 0.11 2.5E-06 57.5 8.1 79 52-134 412-491 (492)
122 KOG0112 Large RNA-binding prot 94.2 0.098 2.1E-06 62.9 7.1 82 50-137 451-534 (975)
123 KOG4307 RNA binding protein RB 94.0 0.21 4.4E-06 58.7 8.9 76 53-129 433-509 (944)
124 PF14605 Nup35_RRM_2: Nup53/35 93.5 0.18 4E-06 40.8 5.5 52 55-113 2-53 (53)
125 KOG0120 Splicing factor U2AF, 93.3 0.22 4.8E-06 57.5 7.8 64 70-133 425-491 (500)
126 KOG0112 Large RNA-binding prot 93.1 0.063 1.4E-06 64.5 3.0 79 52-131 370-448 (975)
127 KOG0128 RNA-binding protein SA 92.8 0.041 8.9E-07 65.7 1.1 79 54-133 736-814 (881)
128 KOG0105 Alternative splicing f 92.8 0.54 1.2E-05 47.4 8.5 65 51-122 112-176 (241)
129 KOG0128 RNA-binding protein SA 92.7 0.013 2.7E-07 69.9 -3.4 77 52-128 665-741 (881)
130 KOG1365 RNA-binding protein Fu 92.6 0.32 6.9E-06 53.7 7.2 75 54-129 280-357 (508)
131 PTZ00266 NIMA-related protein 91.9 0.94 2E-05 56.9 11.2 21 650-670 874-894 (1021)
132 KOG0115 RNA-binding protein p5 91.6 0.2 4.3E-06 52.8 4.1 62 55-117 32-93 (275)
133 KOG2193 IGF-II mRNA-binding pr 91.1 0.25 5.5E-06 55.0 4.5 73 55-134 2-76 (584)
134 KOG1029 Endocytic adaptor prot 91.1 8.2 0.00018 46.6 16.8 9 135-143 195-203 (1118)
135 PTZ00266 NIMA-related protein 91.0 2.5 5.4E-05 53.2 13.5 8 111-118 129-136 (1021)
136 KOG1996 mRNA splicing factor [ 91.0 0.64 1.4E-05 49.8 7.2 64 69-132 301-365 (378)
137 KOG1365 RNA-binding protein Fu 90.6 0.48 1E-05 52.4 6.0 78 54-145 161-242 (508)
138 KOG4285 Mitotic phosphoprotein 90.5 2.4 5.1E-05 45.9 10.9 64 55-126 198-261 (350)
139 COG5178 PRP8 U5 snRNP spliceos 89.9 0.38 8.1E-06 59.2 4.9 31 54-84 72-102 (2365)
140 KOG2068 MOT2 transcription fac 89.2 0.16 3.5E-06 55.3 1.1 87 55-143 78-170 (327)
141 PF15023 DUF4523: Protein of u 86.8 2.9 6.2E-05 40.8 7.7 74 51-132 83-160 (166)
142 KOG1456 Heterogeneous nuclear 86.3 2 4.4E-05 47.5 7.3 72 60-136 128-201 (494)
143 PF10309 DUF2414: Protein of u 84.7 4.2 9.1E-05 34.2 6.8 55 54-116 5-62 (62)
144 PF08675 RNA_bind: RNA binding 84.1 3.6 7.9E-05 36.7 6.5 55 55-118 10-64 (87)
145 KOG4574 RNA-binding protein (c 83.1 2.7 5.9E-05 50.8 7.0 74 54-133 298-373 (1007)
146 PF03467 Smg4_UPF3: Smg-4/UPF3 82.1 1 2.3E-05 45.4 2.8 82 52-133 5-97 (176)
147 KOG2202 U2 snRNP splicing fact 80.3 1.1 2.3E-05 47.5 2.1 62 71-133 85-147 (260)
148 KOG4660 Protein Mei2, essentia 79.5 3.7 8E-05 47.7 6.3 79 54-132 361-471 (549)
149 PF04847 Calcipressin: Calcipr 78.6 5.2 0.00011 40.8 6.5 60 68-133 9-70 (184)
150 PF07576 BRAP2: BRCA1-associat 77.9 18 0.00039 33.8 9.3 66 55-122 13-80 (110)
151 TIGR03687 pupylate_cterm ubiqu 77.2 3.4 7.5E-05 30.1 3.3 24 708-731 4-27 (33)
152 KOG4210 Nuclear localization s 76.9 1.8 3.9E-05 47.0 2.8 78 52-129 86-163 (285)
153 PF03880 DbpA: DbpA RNA bindin 76.0 11 0.00024 32.3 6.9 67 56-131 2-74 (74)
154 KOG2135 Proteins containing th 72.1 2.6 5.7E-05 48.0 2.6 72 55-133 373-445 (526)
155 PF11517 Nab2: Nuclear abundan 71.7 20 0.00044 32.9 7.5 74 672-745 8-83 (107)
156 KOG0226 RNA-binding proteins [ 68.0 6.6 0.00014 41.7 4.3 73 52-125 94-169 (290)
157 KOG4364 Chromatin assembly fac 66.6 1.2E+02 0.0027 36.5 14.4 17 414-430 348-364 (811)
158 KOG2591 c-Mpl binding protein, 64.5 9.8 0.00021 44.4 5.1 68 53-127 174-245 (684)
159 KOG4364 Chromatin assembly fac 62.3 2.8E+02 0.006 33.7 16.1 22 409-430 335-356 (811)
160 KOG0804 Cytoplasmic Zn-finger 60.9 28 0.0006 39.9 7.7 69 52-122 72-141 (493)
161 KOG4410 5-formyltetrahydrofola 60.0 53 0.0012 35.6 9.2 50 53-108 329-379 (396)
162 KOG1923 Rac1 GTPase effector F 59.8 17 0.00037 44.0 6.1 8 378-385 670-677 (830)
163 KOG1925 Rac1 GTPase effector F 55.4 24 0.00051 40.9 6.0 10 538-547 753-762 (817)
164 KOG4246 Predicted DNA-binding 55.3 5.4 0.00012 48.2 1.1 51 94-148 156-206 (1194)
165 KOG2318 Uncharacterized conser 51.8 58 0.0012 38.5 8.4 79 51-129 171-303 (650)
166 KOG3702 Nuclear polyadenylated 47.8 22 0.00047 42.5 4.4 64 673-736 21-84 (681)
167 PF05639 Pup: Pup-like protein 45.1 6.6 0.00014 33.7 -0.2 25 707-731 39-63 (69)
168 PF11767 SET_assoc: Histone ly 42.3 1.2E+02 0.0027 25.8 7.0 55 65-128 11-65 (66)
169 PF09707 Cas_Cas2CT1978: CRISP 42.2 38 0.00082 30.4 4.1 48 54-104 25-72 (86)
170 KOG2888 Putative RNA binding p 40.9 22 0.00047 39.1 2.9 18 68-85 83-100 (453)
171 KOG2135 Proteins containing th 35.9 39 0.00085 39.0 3.9 63 674-736 7-73 (526)
172 KOG1925 Rac1 GTPase effector F 34.9 81 0.0018 36.7 6.2 13 65-77 317-329 (817)
173 PF11671 Apis_Csd: Complementa 34.9 26 0.00056 33.7 2.0 9 368-376 38-46 (146)
174 PF13797 Post_transc_reg: Post 34.1 1E+02 0.0022 27.8 5.5 58 672-729 5-67 (87)
175 KOG3938 RGS-GAIP interacting p 32.7 40 0.00087 36.2 3.2 56 680-735 264-322 (334)
176 KOG2295 C2H2 Zn-finger protein 32.4 7.7 0.00017 45.2 -2.2 70 53-122 230-299 (648)
177 KOG4454 RNA binding protein (R 31.7 11 0.00024 39.3 -1.0 76 52-128 78-157 (267)
178 cd07354 HN_L-delphilin-R1_like 30.8 96 0.0021 27.5 4.6 47 681-728 9-58 (80)
179 PF02607 B12-binding_2: B12 bi 29.6 1.5E+02 0.0034 25.0 5.9 51 678-733 3-54 (79)
180 KOG3671 Actin regulatory prote 29.1 1E+02 0.0022 35.9 5.8 7 108-114 497-503 (569)
181 PF15473 PCNP: PEST, proteolyt 28.4 22 0.00047 34.9 0.3 19 511-529 88-106 (150)
182 KOG3671 Actin regulatory prote 28.1 2.3E+02 0.0049 33.3 8.2 29 56-84 483-511 (569)
183 PRK11558 putative ssRNA endonu 26.9 82 0.0018 29.0 3.7 50 54-106 27-76 (97)
184 KOG3054 Uncharacterized conser 26.9 2.1E+02 0.0045 30.6 7.1 8 542-549 258-265 (299)
185 COG0724 RNA-binding proteins ( 24.8 85 0.0018 31.4 4.0 64 51-114 222-285 (306)
186 KOG4483 Uncharacterized conser 24.4 1.4E+02 0.0029 34.1 5.5 55 54-115 391-446 (528)
187 KOG4019 Calcineurin-mediated s 22.6 72 0.0016 32.6 2.8 73 54-132 10-88 (193)
188 TIGR01795 CM_mono_cladeE monof 22.4 3.1E+02 0.0066 24.9 6.6 38 711-748 52-91 (94)
189 COG5178 PRP8 U5 snRNP spliceos 21.9 83 0.0018 40.2 3.6 18 2-19 4-21 (2365)
190 cd07347 harmonin_N_like N-term 20.7 3.1E+02 0.0067 24.3 6.0 60 677-736 5-64 (78)
191 KOG2891 Surface glycoprotein [ 20.4 8.8E+02 0.019 26.5 10.4 75 305-381 324-399 (445)
No 1
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=100.00 E-value=1.3e-67 Score=587.12 Aligned_cols=633 Identities=32% Similarity=0.476 Sum_probs=374.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCC
Q 004460 15 GVLPSVARPPVPGIPGVRPIMPPVVRPVPLPTVTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGT 94 (752)
Q Consensus 15 g~~P~~~~Pp~p~~pg~~P~~~~~~rp~~~p~~~~~~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk 94 (752)
|+...+++|.+|++|++.+.+| . .++..|.. ..-++..+||||||...+....+..++..||.|.+|+++.
T Consensus 4 ~~~q~a~~P~~~~~~~~~~~~p-~-~~p~qp~~-~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------ 74 (668)
T KOG2253|consen 4 GNTQAAGMPMMPQVPMVGNGVP-Y-VVPIQPVF-QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------ 74 (668)
T ss_pred ccccCCCCCCCCCCccccCCcc-c-ccCCcccc-cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------
Confidence 3444455555666666555554 1 11112222 2234578999999999999999999999999999998754
Q ss_pred CccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeecchHHHHHHHHHHhhhhhhhhhhccccCCCCccccccccccCC
Q 004460 95 PKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNE 174 (752)
Q Consensus 95 ~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~s~kk~le~~k~kkke~~~~~k~~~~~~~~~~~~~~~~~~~~~ 174 (752)
||||.|..+....+|++.|+...++|..|.++++..+ + ++.+..+..+ ...+..
T Consensus 75 ---fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~q~---~--------~n~~k~~~~~------------~~~~~~ 128 (668)
T KOG2253|consen 75 ---FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDEQT---I--------ENADKEKSIA------------NKESHK 128 (668)
T ss_pred ---hcccchhhHHHHHHHHHHhcccCCCcchhhccchhhh---h--------cCccccccch------------hhhhcc
Confidence 9999999999999999999999999999999876211 1 0000000000 111112
Q ss_pred CCCCCc---------ccccCCCCCCCCCCCccccccchhhhhhhHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCC
Q 004460 175 PTKSPE---------NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEERLKTNPLPPPPPQTTADGSGISN 245 (752)
Q Consensus 175 ~~~~~~---------~~~~gd~~~~~~~~v~~~~~~~~ed~~~d~~~~Eki~~~~eer~~~~~~~~~~~~~~~~~~~~~~ 245 (752)
|.|+.+ ....++...+.++.+++-..++.....+|.-.++.+.+.+++......++.++..+... .
T Consensus 129 f~p~~srr~e~i~~k~~~l~~~~~~~~~~is~s~~s~~~~~e~d~h~~e~~~~~~~s~~~~~~~~~~~~~~~e~-----~ 203 (668)
T KOG2253|consen 129 FVPSSSRRQESIQNKPLSLDEQIHKKSLQISSSAASRRQIAEADDHCLELEKTETESNSALSKEAESKKSPFED-----T 203 (668)
T ss_pred cCCchhHHHHHhhccccchhHHHHHHHHhccchhhhhhhhHHHHHHHHHHHHhhcccccccCcccccccCchhh-----h
Confidence 222111 11111111222223333222323333334433444444443332211111111100000 0
Q ss_pred CCCCcCcCCCCCcchhccchhcccccccccccccccCCCCCCCCCCCCccccccccccchhHHHHHHhhHHHHHHHHHHH
Q 004460 246 SELPAKARDGDSDVDMIRNDIAEDKLDDETTSDTKASDHDRPETSSPDRSRVHDRRGRDKERDLKREKEREIDRYEREAE 325 (752)
Q Consensus 246 ~e~p~~~rd~~~~~d~~k~~~~~~~~~~~~~~~~~~~e~er~~~~~~~r~r~r~r~~r~r~re~~r~~ere~~r~~r~re 325 (752)
. + .+.+.+..+ .+ ......+ ..+..+++. +++.+...+.|...+.+++.+....
T Consensus 204 ~--~--s~~~~s~td-------------s~-~~~d~~~-----~~s~~~n~~---rd~sr~~~r~R~~~r~Re~~e~~ed 257 (668)
T KOG2253|consen 204 K--D--SKRSFSSTD-------------SG-SESDSAE-----VNSSSLNYC---RDRSRFDRRSRNDRRIRERLEKNED 257 (668)
T ss_pred c--h--hhhhhcccC-------------cc-ccchhhh-----hcccccccc---hhhccchhhhHHHHHHHHHhhhccc
Confidence 0 0 000000000 00 0000000 000111111 1111111111111111111111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhcccchhhhhhhhhhh
Q 004460 326 RERVRKEREQRRKIEEAEREYERCLKDWEYREREREKERQYEKEKEKERE------RKRKKEILYDEEEDEDDSRKRWRR 399 (752)
Q Consensus 326 rer~r~~r~~~~k~re~E~~y~er~r~we~RER~r~~~re~ekerere~e------r~r~ke~l~d~dderd~~rk~~r~ 399 (752)
.+..++.|...++..++|+||+.|++.|+.||+.+++.+++++.+|+++. ++++++|++||||++|+ .+||++
T Consensus 258 ~~~~re~r~~~~~~~~~E~Ayq~rl~~we~Rer~~~Ke~eke~~ke~~r~~~~~ke~kr~k~~~ed~DD~rdd-~~y~r~ 336 (668)
T KOG2253|consen 258 SDEYREDRAATIKSVDPEKAYQTRLVFWEIREQTKEKEREKERLKEKSRQYKREKEAKRLKEFLEDYDDERDD-PKYYRG 336 (668)
T ss_pred hHHHHHhhhhhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcchhhhh-HHHHHH
Confidence 24566778889999999999999999999999998555554444444433 36899999999999997 799999
Q ss_pred hHHHHHHHHHhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhhccCCCc-------cccccc------c
Q 004460 400 SVLEEKRRKRIREKEEDLADEVREEEEIAVAKRRAEEEQLQQQQRDALKLLSDNAVNGSL-------AEESAV------E 466 (752)
Q Consensus 400 ~~~~~R~r~r~rE~e~D~~DR~rE~eE~~e~~~r~~ee~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~------~ 466 (752)
++|.+|++++.+|+|+|.+||.+|++|++|+|++..++..+.....+...+......... .+.... +
T Consensus 337 s~l~~r~r~~~re~Ead~~dR~qeqee~~E~Kr~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~a~~ke~e~~~~~~~~q 416 (668)
T KOG2253|consen 337 SALQERLRDREREAEADRRDRHQEQEELEEIKRRHSEEEAEDPSAEEERNMEEEEALDEEEDDEAVRKEPEERDLEESHQ 416 (668)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhcccccchHHHHHHhhhhhhcchhhHHHHhhCcccccCccccc
Confidence 999999999999999999999999999999999987765432221111111111100000 000000 0
Q ss_pred cCCCCCCCCCCCCCCCCccc----cccccccCCCcccccccccccCCCCccccCccCCCCCCcchhhcccCCCcccccCC
Q 004460 467 SKGDPSSQNGNGDESTNVPI----AASDMRQSGNVPARKLGFGLVGSGKRTAVPSVFHVEDDDDADKDKKMRPLVPIDYS 542 (752)
Q Consensus 467 ~~~~~~~~~~~~d~~~~~~~----~~~~~~~~~~~~~~k~~~~~~~~~kr~~v~~vf~~~ddee~~~~~~kr~LvPi~y~ 542 (752)
.-+....+....++.-..+. -+...-.-..+|...+++|+++++.+..++.+|-.-+...+++...+..++||.|+
T Consensus 417 ~~~e~a~~~~~~~eee~~s~r~~~~~d~~~~i~~~ps~~~~s~~~~~n~~~~~~~~~~~~~e~~~~es~n~~~n~p~~~~ 496 (668)
T KOG2253|consen 417 RLGESANQEHSNDEEEIKSQRDDYKPDENDHISHAPSASLASGLVDANDRDSSPRGFKERHEREDDESLNKKINRPILAS 496 (668)
T ss_pred hHHhhhhhccccchhhcccchhhhhhhhhhhhhcCchhhhhhhccCCCCCCcccccccccccCcchhhhccccccccccc
Confidence 00000000011111000000 00011133566777888899888899999999887666555677778899999998
Q ss_pred hHHHhhccCCCCCCCCCchHHHHHHHHHhcccCchhhhchHHHHhhhhcccccchhhccccccccchhhhhhhhhhhccc
Q 004460 543 TEELQAAQPHVSGANPPNLAAAAEFAKRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRD 622 (752)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 622 (752)
.....+.. ++.+.+..++. -+..|++ ...+ .++|.+-+... ++++++.+
T Consensus 497 ~~~q~~~g-----~sa~~~~i~~k---k~~~~~v---------------------~~~~-~d~Dk~v~~~k-k~vp~dyd 545 (668)
T KOG2253|consen 497 IQNQDEIG-----PSASPIPIAKK---KLPETGV---------------------FRED-DDEDKNVHEKK-KLVPLDYD 545 (668)
T ss_pred cccccccc-----CCCCccccccc---cCCCccc---------------------cccc-CCcccccchhh-hcccccCC
Confidence 75433322 22111111111 0111110 0111 12222333333 77777776
Q ss_pred cccccccccccCcchhhhhhHHhhhhcCCCCchhhhcccccccccchhhhhhhhhhhHHHHHHHhhCCchhHHHHHHHHh
Q 004460 623 RDREHGLDKVKTPDNKKLLDAKQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSS 702 (752)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~l~~~ip~~k~~lf~~~v~w~~vd~~~~~~~~~pwi~kki~e~lG~ee~~lvd~i~~~ 702 (752)
++..- ...+.+.+ .|..++++||.+||++|++||+|+|+|+.||.-+|+.+|+|||+|||+||||++|++||||||++
T Consensus 546 ~n~~~-~~~~~~nd-eK~~~~ksLI~tIP~~keeLf~~pidw~~ld~~lm~~rirpwV~KKIiEflGeeE~tLVdFI~s~ 623 (668)
T KOG2253|consen 546 RNQAR-AHSGESND-EKRKRIKSLIETIPTEKEELFAYPIDWDELDSILMNERIRPWVNKKIIEFLGEEEDTLVDFICSN 623 (668)
T ss_pred hhhcc-cccCCcch-hHHHHHHhhcccCCcchHHHhhCcccHHHHhhHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHH
Confidence 64211 11122222 24568999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 004460 703 TQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETGLA 747 (752)
Q Consensus 703 l~~~~~p~~l~~~l~~~ld~~a~~fv~~lWr~life~~~~~~gl~ 747 (752)
|+.|.+||+||.+|.++||++|++||+|||||||||+.+++.||+
T Consensus 624 i~~h~~~q~iL~dl~~ilDEdAE~FV~KmWRlLiyel~ar~~g~~ 668 (668)
T KOG2253|consen 624 IRQHSSPQQILDDLAMILDEDAEVFVVKMWRLLIYELGARKLGLT 668 (668)
T ss_pred HHhcCCHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhccCC
Confidence 999999999999999999999999999999999999999999985
No 2
>PF01480 PWI: PWI domain; InterPro: IPR002483 The PWI domain, named after a highly conserved PWI tri-peptide located within its N-terminal region, is a ~80 amino acid module, which is found either at the N terminus or at the C terminus of eukaryotic proteins involved in pre-mRNA processing []. It is generally found in association with other domains such as RRM and RS. The PWI domain is a RNA/DNA-binding domain that has an equal preference for single- and double-stranded nucleic acids and is likely to have multiple important functions in pre-mRNA processing []. Proteins containing this domain include the SR-related nuclear matrix protein of 160kDa (SRm160) splicing and 3'-end cleavage-stimulatory factor, and the mammalian splicing factor PRP3. The PWI domain is a soluble, globular and independently folded domain which consists of a four-helix bundle, with structured N- and C-terminal elements [].; GO: 0006397 mRNA processing; PDB: 1MP1_A 1X4Q_A.
Probab=99.75 E-value=7.5e-19 Score=152.37 Aligned_cols=68 Identities=46% Similarity=0.808 Sum_probs=61.2
Q ss_pred hhhhhhHHHHHHHhhCCchhHHHHHHHHhhhcCC-----CHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 004460 674 ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHV-----KASQMLELLQTILDDEAEMFVLKMWRMLIFEIKK 741 (752)
Q Consensus 674 ~~~~pwi~kki~e~lG~ee~~lvd~i~~~l~~~~-----~p~~l~~~l~~~ld~~a~~fv~~lWr~life~~~ 741 (752)
++|||||.+||++|||++|++||+||+++|..+. +|+.|+++|++||+++|..||.+||++|||.+..
T Consensus 2 ~~lk~WI~~kl~e~lG~edd~lvdyI~~~l~~~~~~~~~~~~~l~~~L~~fL~~~a~~Fv~~Lw~~l~~~q~~ 74 (77)
T PF01480_consen 2 EKLKPWISKKLEEILGFEDDVLVDYIVALLKSHKSSNEPDPKELQEQLEDFLDEEAEEFVDELWRLLISAQSS 74 (77)
T ss_dssp HHHHHHHHHHHHHHHSS--CHHHHHHHHHCCTT--SSS--HHHHHHHHTTTTGHHCHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 5799999999999999999999999999999887 9999999999999999999999999999988754
No 3
>smart00311 PWI PWI, domain in splicing factors.
Probab=99.72 E-value=1.4e-17 Score=143.37 Aligned_cols=70 Identities=43% Similarity=0.726 Sum_probs=66.9
Q ss_pred hhhhhhhhhHHHHHHHhhCCchhHHHHHHHHhhhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 004460 671 ELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIK 740 (752)
Q Consensus 671 ~~~~~~~pwi~kki~e~lG~ee~~lvd~i~~~l~~~~~p~~l~~~l~~~ld~~a~~fv~~lWr~life~~ 740 (752)
+..++|+|||+++|++|||++|++||+||+++|+.|.+|+.++.+|..+++.+|..||.+||+||||++.
T Consensus 4 v~~~~lk~WI~~kv~e~LG~~d~~vvd~i~~~l~~~~~~~~l~~~L~~~~f~da~~Fv~~Lw~~l~~~~~ 73 (74)
T smart00311 4 LKLDEIKPWITKKVIEFLGFEEDTLVEFILSQIRQHKGPQAKLLQINLTGFEDAEEFVDKLWRLLIFELK 73 (74)
T ss_pred hHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCChHHHHHHHHhhcchhHHHHHHHHHHHHHHhhc
Confidence 3458899999999999999999999999999999999999999999999999999999999999999875
No 4
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=99.69 E-value=9.2e-18 Score=172.36 Aligned_cols=89 Identities=21% Similarity=0.524 Sum_probs=75.3
Q ss_pred hhhhcccccccccchhhhhhhhhhhHHHHHHHhhCCchhHHHHHHHHhhhc--CCCHHHHHHHHHHhhh-HHHHHHHHHH
Q 004460 655 EELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQD--HVKASQMLELLQTILD-DEAEMFVLKM 731 (752)
Q Consensus 655 ~~lf~~~v~w~~vd~~~~~~~~~pwi~kki~e~lG~ee~~lvd~i~~~l~~--~~~p~~l~~~l~~~ld-~~a~~fv~~l 731 (752)
.+-+...||+..|+ .++|+|||+++|+|+||+||++||+||+++|.+ ..+|+.||++|+|||. .+|..||.+|
T Consensus 28 ~~~lekkVDmsKvn----leVlkPWItkrvneilgfEDdVViefvynqLee~k~ldpkkmQiNlTGFLngrnAreFmgeL 103 (354)
T KOG2146|consen 28 PACLEKKVDMSKVN----LEVLKPWITKRVNEILGFEDDVVIEFVYNQLEEAKNLDPKKMQINLTGFLNGRNAREFMGEL 103 (354)
T ss_pred HHHHhhhcchhhcc----hhhhhHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCchheeeeeehhcccccHHHHHHHH
Confidence 34555555555553 367899999999999999999999999999976 6799999999999999 9999999999
Q ss_pred HHHHHHHHHhhhhccc
Q 004460 732 WRMLIFEIKKVETGLA 747 (752)
Q Consensus 732 Wr~life~~~~~~gl~ 747 (752)
|-|||-+.-+.+.||.
T Consensus 104 W~LliS~a~~s~~giP 119 (354)
T KOG2146|consen 104 WSLLISEASQSQYGIP 119 (354)
T ss_pred HHHHHhhccccccCCc
Confidence 9999987666666654
No 5
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.49 E-value=3.4e-12 Score=141.18 Aligned_cols=81 Identities=11% Similarity=0.256 Sum_probs=75.3
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.-+++|||.+|+..+...+|+.||++||.|+..+++++..+...+|||||++.+...|.+||.+||.++|.|+.|.|.-+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34689999999999999999999999999999999999888888999999999999999999999999999999999754
Q ss_pred c
Q 004460 132 Q 132 (752)
Q Consensus 132 ~ 132 (752)
.
T Consensus 483 K 483 (940)
T KOG4661|consen 483 K 483 (940)
T ss_pred c
Confidence 3
No 6
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.48 E-value=2.2e-13 Score=131.91 Aligned_cols=82 Identities=18% Similarity=0.329 Sum_probs=78.0
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
...++|||+|||+.+++.+|+.+|.+||.|.++.++.++.||+++|||||+|.+.++|..||..||+..|+|+.|.|.|+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 44789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 112 ~~ 113 (144)
T PLN03134 112 ND 113 (144)
T ss_pred Cc
Confidence 53
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.47 E-value=3.9e-13 Score=146.81 Aligned_cols=82 Identities=17% Similarity=0.310 Sum_probs=77.8
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
..+.+|||+|||+.+++++|..+|++||.|.+++|+.++.||.++|||||.|.+.++|..||..|||..|+|+.|.|.|.
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 34568999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
.+
T Consensus 347 ~~ 348 (352)
T TIGR01661 347 TN 348 (352)
T ss_pred cC
Confidence 64
No 8
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=1.5e-13 Score=127.49 Aligned_cols=82 Identities=22% Similarity=0.404 Sum_probs=78.9
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
..++|||||||++.++++.|.+||+.||.|..+.+-.|+.+..++|||||+|.+.++|..||+.++|+.++.++|.|.|+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 75
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.40 E-value=3.8e-12 Score=139.82 Aligned_cols=83 Identities=16% Similarity=0.316 Sum_probs=78.5
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
....++|||+|||+++++.+|+.+|..||.|..|+|+.+..+|+++|||||+|.+.++|..||..||+..|.+++|.|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 34678999999999999999999999999999999999989999999999999999999999999999999999999988
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 184 a~p 186 (346)
T TIGR01659 184 ARP 186 (346)
T ss_pred ccc
Confidence 753
No 10
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=4.9e-12 Score=131.80 Aligned_cols=83 Identities=18% Similarity=0.406 Sum_probs=79.0
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
..+.+||||+-|++.+++..|+..|..||.|..+.||.+..||+++|||||+|.+.-+...|....+|..|+|+.|.|+|
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
...
T Consensus 178 ERg 180 (335)
T KOG0113|consen 178 ERG 180 (335)
T ss_pred ccc
Confidence 643
No 11
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.36 E-value=3.9e-12 Score=105.70 Aligned_cols=70 Identities=33% Similarity=0.571 Sum_probs=67.5
Q ss_pred EEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004460 57 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (752)
Q Consensus 57 VfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~ 127 (752)
|||+|||.+++..+|..+|+.||.|..+.+..+ .++.+++||||.|.+.++|..|+..|||..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 6899999999999999999999999999999999885
No 12
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.32 E-value=6.6e-12 Score=137.20 Aligned_cols=81 Identities=19% Similarity=0.355 Sum_probs=77.3
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
+.++|||+|||+.+++.+|+.+|+.||.|.+|+|+.++.+|+++|||||+|.+.++|..||..|||..|.|+.|.|.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 36899999999999999999999999999999999998899999999999999999999999999999999999999875
Q ss_pred c
Q 004460 133 A 133 (752)
Q Consensus 133 s 133 (752)
.
T Consensus 82 ~ 82 (352)
T TIGR01661 82 P 82 (352)
T ss_pred c
Confidence 4
No 13
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1.6e-11 Score=125.08 Aligned_cols=84 Identities=23% Similarity=0.333 Sum_probs=80.0
Q ss_pred CCCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
.-.+.++|-|.|||.++++.+|..||..||.|.++.+..+..||.++|||||.|.+.+.|.+||..|||+-++.-.|.|.
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 34468899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecc
Q 004460 130 VDQA 133 (752)
Q Consensus 130 ~a~s 133 (752)
|+..
T Consensus 265 wskP 268 (270)
T KOG0122|consen 265 WSKP 268 (270)
T ss_pred ecCC
Confidence 9864
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.21 E-value=5.8e-11 Score=137.78 Aligned_cols=82 Identities=24% Similarity=0.428 Sum_probs=77.7
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
...++|||+||++.+++++|+.+|+.||.|.+|.++.++.+|+++|||||.|.+.++|..||..||++.|+|+.|.|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 34679999999999999999999999999999999999889999999999999999999999999999999999999887
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 282 i~ 283 (612)
T TIGR01645 282 VT 283 (612)
T ss_pred CC
Confidence 64
No 15
>PLN03213 repressor of silencing 3; Provisional
Probab=99.21 E-value=6.5e-11 Score=129.63 Aligned_cols=91 Identities=20% Similarity=0.363 Sum_probs=80.3
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCH--HHHHHHHHHhCCceeCCeEEEEE
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESA--EGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~--esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
....+||||||++.+++++|..+|+.||.|.++.|++ .+| +|||||+|.+. .++.+||..|||..++|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 3467999999999999999999999999999999994 577 99999999987 78999999999999999999986
Q ss_pred eecchHHHHHHHHHHhhhh
Q 004460 130 VDQATREYLERYVDKKTEN 148 (752)
Q Consensus 130 ~a~s~kk~le~~k~kkke~ 148 (752)
.+...||+.++..+++.
T Consensus 84 --KAKP~YLeRLkrEReea 100 (759)
T PLN03213 84 --KAKEHYLARLKREWEAA 100 (759)
T ss_pred --eccHHHHHHHHHHHHHh
Confidence 55678998888766443
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.20 E-value=1.3e-10 Score=133.35 Aligned_cols=82 Identities=20% Similarity=0.399 Sum_probs=77.6
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
...++|||||||+.++++.|..+|..||.|..+.++.++.+|.++|||||+|.+.+.|..||..|||+.|+|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 373 ~~ 374 (509)
T TIGR01642 373 CV 374 (509)
T ss_pred cc
Confidence 53
No 17
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=2.5e-11 Score=123.25 Aligned_cols=82 Identities=23% Similarity=0.343 Sum_probs=74.0
Q ss_pred CCCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
.+..-++||||+|++.+..+.|+.+|.+||.|+...|+.|+.||+++|||||+|.+.++|.+||. -..-.|+|++-.|+
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccc
Confidence 34557899999999999999999999999999999999999999999999999999999999998 34557899998887
Q ss_pred eec
Q 004460 130 VDQ 132 (752)
Q Consensus 130 ~a~ 132 (752)
++-
T Consensus 87 lA~ 89 (247)
T KOG0149|consen 87 LAS 89 (247)
T ss_pred hhh
Confidence 653
No 18
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.19 E-value=4.5e-11 Score=138.68 Aligned_cols=79 Identities=28% Similarity=0.422 Sum_probs=75.7
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
...++||||||++.+++++|+.+|..||.|.+|.++.++.+|+++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 3468999999999999999999999999999999999999999999999999999999999999999999999999974
No 19
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=1.2e-10 Score=122.81 Aligned_cols=81 Identities=19% Similarity=0.227 Sum_probs=74.9
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.....|+|.|||+...+.+|+.+|.+||.|.+|.|+.+ ...+||||||+|+++++|.+|-..|||..|.|++|.|+.+
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 34679999999999999999999999999999999997 5678999999999999999999999999999999999877
Q ss_pred cch
Q 004460 132 QAT 134 (752)
Q Consensus 132 ~s~ 134 (752)
-..
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 654
No 20
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.19 E-value=9.1e-11 Score=98.50 Aligned_cols=70 Identities=33% Similarity=0.575 Sum_probs=64.6
Q ss_pred EEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004460 57 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (752)
Q Consensus 57 VfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~ 127 (752)
|||+|||++++.++|..+|+.||.|..+.+..+.. |.++++|||+|.+.++|.+|+..+++..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999855 99999999999999999999999999999999874
No 21
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=3.7e-12 Score=124.60 Aligned_cols=82 Identities=21% Similarity=0.325 Sum_probs=77.4
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
-.++.-|||||||+..|+.+|.-+|++||.|+.+.+++|..||+++||||+.|++..+..-||..|||+.|.|+.|+|.-
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred ec
Q 004460 131 DQ 132 (752)
Q Consensus 131 a~ 132 (752)
..
T Consensus 112 v~ 113 (219)
T KOG0126|consen 112 VS 113 (219)
T ss_pred cc
Confidence 43
No 22
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.18 E-value=9.1e-11 Score=122.60 Aligned_cols=76 Identities=14% Similarity=0.189 Sum_probs=70.0
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeecc
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~s 133 (752)
.++|||||||+.+++.+|+.||+.||.|.+|.|+.+. ..+|||||+|.++++|..||. |||..|+|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 5799999999999999999999999999999998874 357999999999999999996 999999999999987653
No 23
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=2.2e-10 Score=124.98 Aligned_cols=83 Identities=25% Similarity=0.414 Sum_probs=77.8
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEe
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLKV 130 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~-Gr~L~V~~ 130 (752)
..+|.||||.||.++.+++|.-||.+.|.|-.++++.++.+|.++|||||+|++.+.|..||..||+++|. |+.|.|.+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 34899999999999999999999999999999999999999999999999999999999999999999997 89999887
Q ss_pred ecch
Q 004460 131 DQAT 134 (752)
Q Consensus 131 a~s~ 134 (752)
+..+
T Consensus 161 Svan 164 (506)
T KOG0117|consen 161 SVAN 164 (506)
T ss_pred eeec
Confidence 7543
No 24
>smart00362 RRM_2 RNA recognition motif.
Probab=99.12 E-value=3.7e-10 Score=92.32 Aligned_cols=71 Identities=30% Similarity=0.539 Sum_probs=67.0
Q ss_pred EEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004460 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (752)
Q Consensus 56 tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (752)
+|||+|||..++..+|..+|..||.|..+.+..++ |.+.|+|||+|.+...|..|+..+++..+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999988774 889999999999999999999999999999999886
No 25
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.12 E-value=2.2e-10 Score=126.02 Aligned_cols=81 Identities=23% Similarity=0.393 Sum_probs=75.1
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEe
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLKV 130 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~G--r~L~V~~ 130 (752)
..++|||+|||..+++++|+.+|+.||.|..|.|+.+..+|+++|||||+|.+.++|..||..||+..|.+ +.|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 35789999999999999999999999999999999998899999999999999999999999999999876 6788887
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 272 a~~ 274 (346)
T TIGR01659 272 AEE 274 (346)
T ss_pred CCc
Confidence 764
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.12 E-value=2.3e-10 Score=129.74 Aligned_cols=79 Identities=27% Similarity=0.496 Sum_probs=76.5
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
.++|||+|||..++++.|..+|+.||.|..|.++.++.+|.++|||||+|.+.+.|..|+..|||+.|+|+.|.|.|+.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 6899999999999999999999999999999999998889999999999999999999999999999999999999976
No 27
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.12 E-value=1.4e-10 Score=129.89 Aligned_cols=82 Identities=33% Similarity=0.594 Sum_probs=79.0
Q ss_pred CEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeecch
Q 004460 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 134 (752)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~s~ 134 (752)
+.|||||||+.++++.|..+|+.+|.|.+++++.|+.||+++|||||+|.+.+.+..|+..|||..+.|++|.|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred HH
Q 004460 135 RE 136 (752)
Q Consensus 135 kk 136 (752)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 28
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=4.4e-10 Score=115.21 Aligned_cols=83 Identities=19% Similarity=0.304 Sum_probs=77.9
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
...+.-|||-||++++.+..|-++|+.||.|..+++++|..|.+.+|||||.+.+.++|..||..|||+.++++.|.|.+
T Consensus 275 ~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsF 354 (360)
T KOG0145|consen 275 PGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 354 (360)
T ss_pred CCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEE
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
..+
T Consensus 355 Ktn 357 (360)
T KOG0145|consen 355 KTN 357 (360)
T ss_pred ecC
Confidence 543
No 29
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=1e-10 Score=120.18 Aligned_cols=82 Identities=16% Similarity=0.276 Sum_probs=77.7
Q ss_pred CCCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
..+.+|+|||-+||...++.+|..+|-.||.|++.++..|+.|..++|||||.|.++.++..||..|||+.|+.++|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred ee
Q 004460 130 VD 131 (752)
Q Consensus 130 ~a 131 (752)
+.
T Consensus 361 LK 362 (371)
T KOG0146|consen 361 LK 362 (371)
T ss_pred hc
Confidence 43
No 30
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=2.1e-10 Score=111.95 Aligned_cols=76 Identities=29% Similarity=0.455 Sum_probs=69.9
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
..+.||||||+..++..+|..+|..||.|.++-|..+ +.|||||+|+++.+|..|+..|+|..|+|..|.|.+..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3789999999999999999999999999999877664 56999999999999999999999999999999998765
Q ss_pred c
Q 004460 133 A 133 (752)
Q Consensus 133 s 133 (752)
.
T Consensus 84 G 84 (195)
T KOG0107|consen 84 G 84 (195)
T ss_pred C
Confidence 3
No 31
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.09 E-value=1.6e-10 Score=115.13 Aligned_cols=81 Identities=20% Similarity=0.276 Sum_probs=77.6
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
..++|.|-||.+.++.++|..+|.+||.|..|.|..++.|+.++|||||-|.+..+|+.|+..|+|..|+|+.|.|.++.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred c
Q 004460 133 A 133 (752)
Q Consensus 133 s 133 (752)
.
T Consensus 92 y 92 (256)
T KOG4207|consen 92 Y 92 (256)
T ss_pred c
Confidence 4
No 32
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.07 E-value=5e-10 Score=114.00 Aligned_cols=80 Identities=26% Similarity=0.457 Sum_probs=76.7
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeecc
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~s 133 (752)
.++|||||||..+++++|..+|..||.|..+.+..++.+|.++|||||.|.+.+.+..|+..+++..|.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 59999999999999999999999999999999999988999999999999999999999999999999999999988653
No 33
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.07 E-value=6.2e-10 Score=126.28 Aligned_cols=82 Identities=23% Similarity=0.356 Sum_probs=76.8
Q ss_pred CCCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
.....++|||+|||..+++.+|+.+|+.||.|..|.++.++.+|+++|||||+|.+.++|..||. |+|..|.|+.|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999998 99999999999997
Q ss_pred eec
Q 004460 130 VDQ 132 (752)
Q Consensus 130 ~a~ 132 (752)
++.
T Consensus 164 ~~~ 166 (457)
T TIGR01622 164 SSQ 166 (457)
T ss_pred ecc
Confidence 654
No 34
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.06 E-value=7.2e-10 Score=129.28 Aligned_cols=84 Identities=23% Similarity=0.406 Sum_probs=78.7
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
...++|||+||+..++++.|+.+|+.||.|.+|+++.+ .+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 34678999999999999999999999999999999999 79999999999999999999999999999999999999998
Q ss_pred cchHH
Q 004460 132 QATRE 136 (752)
Q Consensus 132 ~s~kk 136 (752)
.....
T Consensus 362 ~~k~~ 366 (562)
T TIGR01628 362 QRKEQ 366 (562)
T ss_pred cCcHH
Confidence 76543
No 35
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.06 E-value=5.7e-10 Score=115.10 Aligned_cols=76 Identities=17% Similarity=0.195 Sum_probs=68.9
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
.++||||+||++.+++.+|+.||+.||.|..|.|+.+ +...+||||+|.++.++..||. |||..|.++.|.|.-..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4689999999999999999999999999999999987 4555899999999999999996 99999999999886443
No 36
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.06 E-value=5.4e-10 Score=130.34 Aligned_cols=78 Identities=22% Similarity=0.405 Sum_probs=74.8
Q ss_pred CEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
.+|||||||+++++.+|..+|+.||.|.+|+|+.+..|++++|||||+|.+.++|.+||..||+..|.|+.|.|.|+.
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 379999999999999999999999999999999998899999999999999999999999999999999999998864
No 37
>smart00360 RRM RNA recognition motif.
Probab=99.05 E-value=9.4e-10 Score=89.49 Aligned_cols=70 Identities=31% Similarity=0.539 Sum_probs=66.5
Q ss_pred EccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004460 59 VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (752)
Q Consensus 59 VgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (752)
|+|||..++.++|+.+|..||.|..+.+..++.++.++|||||.|.+.+.|..|+..|++..++|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6899999999999999999999999999988778999999999999999999999999999999999887
No 38
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.04 E-value=2.1e-09 Score=123.33 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=71.4
Q ss_pred CCCCCEEEEccCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 51 EKPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 51 ~~~~~tVfVgNLp~-~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
..++++|||+||++ .++++.|..+|+.||.|.+|+++.+ .+|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 34678999999998 6999999999999999999999876 25899999999999999999999999999999998
Q ss_pred eecc
Q 004460 130 VDQA 133 (752)
Q Consensus 130 ~a~s 133 (752)
++..
T Consensus 347 ~s~~ 350 (481)
T TIGR01649 347 PSKQ 350 (481)
T ss_pred Eccc
Confidence 7654
No 39
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=1.3e-09 Score=111.71 Aligned_cols=88 Identities=16% Similarity=0.346 Sum_probs=82.1
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
+...+.|.|.-||.++|.++|+.+|+..|.|.+|++++|+.+|.+.|||||.|-++.+|.+||..|||+.+..+.|.|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecchHHHH
Q 004460 131 DQATREYL 138 (752)
Q Consensus 131 a~s~kk~l 138 (752)
+......+
T Consensus 118 ARPSs~~I 125 (360)
T KOG0145|consen 118 ARPSSDSI 125 (360)
T ss_pred ccCChhhh
Confidence 98765555
No 40
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.01 E-value=1.1e-09 Score=126.98 Aligned_cols=78 Identities=24% Similarity=0.430 Sum_probs=72.3
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEee
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLKVD 131 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~-Gr~L~V~~a 131 (752)
..++|||+|||.++++++|..+|+.||.|..++|+.+ .+|.++|||||+|.+.++|..||..||+..|. |+.|.|.++
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4699999999999999999999999999999999999 89999999999999999999999999999985 777766554
No 41
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=6.7e-10 Score=104.21 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=78.9
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
...+..|||.++.+.+++++|...|+-||.|+.+.+-.|+.||..+||++|+|++...|+.|+..|||..|.|.+|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+-.
T Consensus 149 ~Fv 151 (170)
T KOG0130|consen 149 CFV 151 (170)
T ss_pred EEe
Confidence 853
No 42
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=2.3e-10 Score=121.57 Aligned_cols=78 Identities=28% Similarity=0.437 Sum_probs=75.4
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
-|.||||.|++.+.++.|+..|..||+|+++.+.+|+.||+++||+||+|+-++.|+-|++.|||..++|+.|.|...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999999753
No 43
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.99 E-value=5.1e-10 Score=109.89 Aligned_cols=79 Identities=19% Similarity=0.421 Sum_probs=75.3
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
...|||||||+..+++..|.++|-++|+|..+.++.+..+..++|||||+|.+.+.|.-|+.+||.+.|-|++|+|.-+
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999999643
No 44
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=9.6e-10 Score=113.57 Aligned_cols=80 Identities=21% Similarity=0.364 Sum_probs=77.3
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeecc
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~s 133 (752)
...||||-|+..++.+.|++.|.+||.|..++|++|..|++++|||||.|-..++|++||..|||..|+++.|+.+|+.-
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999864
No 45
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.97 E-value=4.5e-09 Score=86.34 Aligned_cols=74 Identities=27% Similarity=0.486 Sum_probs=68.4
Q ss_pred EEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 56 tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
+|||+|||..++...|..+|..||.|..+.+..++ .+.+.|+|||.|.+.++|..|+..+++..++|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~-~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK-DTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999998875 447899999999999999999999999999999998863
No 46
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.94 E-value=9.1e-09 Score=92.79 Aligned_cols=83 Identities=16% Similarity=0.278 Sum_probs=74.0
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
..+.|||.|||+.+|.+.+..+|+.||.|..++|.. +...+|-|||.|++..+|.+|+.+|+|+.++++.|.|-+-+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~---~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN---TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecC---ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 367899999999999999999999999999998864 44567999999999999999999999999999999998877
Q ss_pred chHHHH
Q 004460 133 ATREYL 138 (752)
Q Consensus 133 s~kk~l 138 (752)
...++.
T Consensus 94 ~~~~~~ 99 (124)
T KOG0114|consen 94 PEDAFK 99 (124)
T ss_pred HHHHHH
Confidence 655443
No 47
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=3.1e-09 Score=109.85 Aligned_cols=78 Identities=24% Similarity=0.404 Sum_probs=72.1
Q ss_pred CCCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
..+..|+||||||+..++++.|++.|+.||.|..+++..+ +||+||-|.+.++|..||..+|+.+|+|+.+++.
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 3456899999999999999999999999999999999877 4999999999999999999999999999999998
Q ss_pred eecc
Q 004460 130 VDQA 133 (752)
Q Consensus 130 ~a~s 133 (752)
|-..
T Consensus 234 WGKe 237 (321)
T KOG0148|consen 234 WGKE 237 (321)
T ss_pred cccc
Confidence 8653
No 48
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.92 E-value=5.8e-09 Score=119.91 Aligned_cols=75 Identities=24% Similarity=0.320 Sum_probs=61.9
Q ss_pred CCCCCCCEEEEccCCCCCCHHHHHHHHhhcC------------CeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 004460 49 PAEKPQTKVYVGKIAPTADSDFVLSVLKVCG------------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 116 (752)
Q Consensus 49 ~~~~~~~tVfVgNLp~~vte~~L~~lFs~~G------------~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~L 116 (752)
......++|||||||+.+++..|..+|..|+ .|..+. .+..+|||||+|.+.++|..||. |
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~------~~~~kg~afVeF~~~e~A~~Al~-l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN------INKEKNFAFLEFRTVEEATFAMA-L 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE------ECCCCCEEEEEeCCHHHHhhhhc-C
Confidence 3456688999999999999999999999762 222232 24567999999999999999995 9
Q ss_pred CCceeCCeEEEEEe
Q 004460 117 NKFNIDGQELMLKV 130 (752)
Q Consensus 117 ng~~I~Gr~L~V~~ 130 (752)
||+.|.|+.|.|..
T Consensus 243 ~g~~~~g~~l~v~r 256 (509)
T TIGR01642 243 DSIIYSNVFLKIRR 256 (509)
T ss_pred CCeEeeCceeEecC
Confidence 99999999998853
No 49
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=6e-10 Score=111.91 Aligned_cols=82 Identities=22% Similarity=0.390 Sum_probs=78.0
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
..+|||||+|...+++..|...|-.||.|..+.++.|-.+++++|||||+|...++|.+||..||+.+|-|+.|+|+++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred ch
Q 004460 133 AT 134 (752)
Q Consensus 133 s~ 134 (752)
..
T Consensus 89 P~ 90 (298)
T KOG0111|consen 89 PE 90 (298)
T ss_pred Cc
Confidence 43
No 50
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=4.8e-09 Score=114.16 Aligned_cols=90 Identities=20% Similarity=0.288 Sum_probs=79.3
Q ss_pred CCCCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee---CCeE
Q 004460 49 PAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI---DGQE 125 (752)
Q Consensus 49 ~~~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I---~Gr~ 125 (752)
..+....++|||.||..+++.+|+.+|.+||.|.+|.|++|+.||.++|||||.|.+.++|.+|+.+||+... +...
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 3456678999999999999999999999999999999999999999999999999999999999999987643 3568
Q ss_pred EEEEeecchHHHH
Q 004460 126 LMLKVDQATREYL 138 (752)
Q Consensus 126 L~V~~a~s~kk~l 138 (752)
|.|++++..+..+
T Consensus 109 vqvk~Ad~E~er~ 121 (510)
T KOG0144|consen 109 VQVKYADGERERI 121 (510)
T ss_pred eeecccchhhhcc
Confidence 8899888765543
No 51
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.3e-09 Score=113.92 Aligned_cols=86 Identities=19% Similarity=0.342 Sum_probs=82.3
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
.+|-..|||..|++.++.++|.-+|+.||.|.+|.++.+..||.+..|+||+|.+.+++..|.-.|+++.|+.+.|+|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecchHH
Q 004460 131 DQATRE 136 (752)
Q Consensus 131 a~s~kk 136 (752)
+++..+
T Consensus 316 SQSVsk 321 (479)
T KOG0415|consen 316 SQSVSK 321 (479)
T ss_pred hhhhhh
Confidence 998766
No 52
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=4e-09 Score=117.46 Aligned_cols=86 Identities=19% Similarity=0.322 Sum_probs=79.1
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
+-..|.|.|||+.|...+|+.+|+.||.|..+.|+.. ..|+.||||||.|.....|..||..||+..|+|++|.|+|+-
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k-~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRK-KDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccC-CCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 3678999999999999999999999999999999976 578888999999999999999999999999999999999998
Q ss_pred chHHHHH
Q 004460 133 ATREYLE 139 (752)
Q Consensus 133 s~kk~le 139 (752)
....|-.
T Consensus 195 ~Kd~ye~ 201 (678)
T KOG0127|consen 195 DKDTYED 201 (678)
T ss_pred ccccccc
Confidence 7666554
No 53
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.77 E-value=2.2e-08 Score=115.04 Aligned_cols=75 Identities=19% Similarity=0.185 Sum_probs=68.4
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh--CCceeCCeEEEEEe
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL--NKFNIDGQELMLKV 130 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~L--ng~~I~Gr~L~V~~ 130 (752)
++++|||+|||+.+++.+|..+|+.||.|.+|.++.+ ++||||+|.+.++|..||..| ++..|+|+.|.|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4689999999999999999999999999999998854 479999999999999999864 78999999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 75 s~~ 77 (481)
T TIGR01649 75 STS 77 (481)
T ss_pred cCC
Confidence 864
No 54
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=1e-08 Score=109.31 Aligned_cols=95 Identities=26% Similarity=0.470 Sum_probs=86.2
Q ss_pred CCCCCCCCCCCCC-------CCCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHH
Q 004460 37 PVVRPVPLPTVTP-------AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGV 109 (752)
Q Consensus 37 ~~~rp~~~p~~~~-------~~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA 109 (752)
.+++|.++|++.+ ..+....|||..+.++.++.+|+.+|..||.|..|.+.+++..+.++||||++|.+..+.
T Consensus 186 KVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~ 265 (544)
T KOG0124|consen 186 KVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQ 265 (544)
T ss_pred cccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccch
Confidence 5667887777665 345678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCceeCCeEEEEEee
Q 004460 110 LRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 110 ~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
..||..||-+.++|..|+|.-+
T Consensus 266 ~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 266 SEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HHHhhhcchhhcccceEecccc
Confidence 9999999999999999999644
No 55
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=1.2e-08 Score=100.37 Aligned_cols=80 Identities=18% Similarity=0.338 Sum_probs=71.5
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
...++|||||||.++.+.+|..||.+||.|..|.+-.. ..+.+||||+|+++-+|..||..-+|+.++|..|.|.+.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 35789999999999999999999999999999987432 345689999999999999999999999999999999988
Q ss_pred cch
Q 004460 132 QAT 134 (752)
Q Consensus 132 ~s~ 134 (752)
...
T Consensus 81 rgg 83 (241)
T KOG0105|consen 81 RGG 83 (241)
T ss_pred cCC
Confidence 753
No 56
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=3.3e-08 Score=110.29 Aligned_cols=85 Identities=15% Similarity=0.219 Sum_probs=76.7
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh-----CC-ceeCCe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-----NK-FNIDGQ 124 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~L-----ng-~~I~Gr 124 (752)
..-..||||.|||++++++.|...|++||.|.++.++.++.||.++|+|||.|.+...+..||... .| +.|+|+
T Consensus 289 ~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR 368 (678)
T KOG0127|consen 289 ITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGR 368 (678)
T ss_pred ccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEecc
Confidence 344689999999999999999999999999999999999999999999999999999999999866 33 789999
Q ss_pred EEEEEeecchH
Q 004460 125 ELMLKVDQATR 135 (752)
Q Consensus 125 ~L~V~~a~s~k 135 (752)
.|.|..+-..+
T Consensus 369 ~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 369 LLKVTLAVTRK 379 (678)
T ss_pred EEeeeeccchH
Confidence 99998776543
No 57
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.75 E-value=2.9e-08 Score=115.25 Aligned_cols=73 Identities=21% Similarity=0.421 Sum_probs=67.9
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhc--CCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVC--GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~--G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
...+|||+||+..+++++|+.+|+.| |.|.+|.++. +||||+|.+.++|..||..||+..|+|+.|.|.|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999 9999998764 5999999999999999999999999999999999
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 304 Akp 306 (578)
T TIGR01648 304 AKP 306 (578)
T ss_pred ccC
Confidence 864
No 58
>smart00361 RRM_1 RNA recognition motif.
Probab=98.71 E-value=6e-08 Score=82.31 Aligned_cols=61 Identities=20% Similarity=0.169 Sum_probs=54.0
Q ss_pred HHHHHHHHh----hcCCeeEEE-EeecCCC--CCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004460 68 SDFVLSVLK----VCGTVKSWK-RAQYPSN--GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (752)
Q Consensus 68 e~~L~~lFs----~~G~I~~~k-i~~d~~t--Gk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (752)
+++|..+|+ .||.|.++. ++.++.+ |.++|||||.|.+.++|..|+..|||..++|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 357788888 999999995 6666555 899999999999999999999999999999999876
No 59
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.70 E-value=1.7e-08 Score=105.38 Aligned_cols=71 Identities=18% Similarity=0.407 Sum_probs=66.5
Q ss_pred CEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeecc
Q 004460 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (752)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~s 133 (752)
..|||||||..++...|+.+|.+||+|..|.|+++ ||||..++...+.-||+.|||+.|+|..|.|+-+.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 46999999999999999999999999999999987 999999999999999999999999999999975443
No 60
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.69 E-value=1.8e-08 Score=112.84 Aligned_cols=79 Identities=25% Similarity=0.492 Sum_probs=73.8
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
...||||||.+++++..|+.+|..||.|..+.+..+..||.++|||||+|.+.+.|..|+..|||++|-|+.|+|.+..
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 3449999999999999999999999999999999997799999999999999999999999999999999999986543
No 61
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.68 E-value=9.7e-08 Score=77.12 Aligned_cols=56 Identities=29% Similarity=0.452 Sum_probs=50.3
Q ss_pred HHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 71 VLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 71 L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
|..+|++||.|..+.+..+. .++|||+|.+.++|..|+..|||..++|++|.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999886642 689999999999999999999999999999999885
No 62
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.66 E-value=1.9e-08 Score=109.63 Aligned_cols=81 Identities=20% Similarity=0.372 Sum_probs=74.5
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC---CeEEEEEe
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELMLKV 130 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~---Gr~L~V~~ 130 (752)
.++||||-|+..+++.+|+.+|++||.|..|.|.++ ..|.++|||||.|.+.+-|..||..|||..-+ ..+|.|+|
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 578999999999999999999999999999999999 59999999999999999999999999998543 56899999
Q ss_pred ecchH
Q 004460 131 DQATR 135 (752)
Q Consensus 131 a~s~k 135 (752)
++..+
T Consensus 203 ADtqk 207 (510)
T KOG0144|consen 203 ADTQK 207 (510)
T ss_pred cccCC
Confidence 98653
No 63
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.62 E-value=9.6e-08 Score=95.89 Aligned_cols=85 Identities=25% Similarity=0.330 Sum_probs=76.5
Q ss_pred CCCCCCEEEEccCCCCCCHHHHHHHHhhc-CCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004460 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVC-GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (752)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lFs~~-G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (752)
......-+||+.||..+.+..|..+|.+| |.|..+++.++..||.++|||||+|++.+-|.-|-..||++-|+|+.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34456679999999999999999999998 67788888899999999999999999999999999999999999999999
Q ss_pred Eeecch
Q 004460 129 KVDQAT 134 (752)
Q Consensus 129 ~~a~s~ 134 (752)
.|=...
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 886654
No 64
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.58 E-value=1.1e-07 Score=104.14 Aligned_cols=74 Identities=16% Similarity=0.363 Sum_probs=69.5
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
....|||.||+.++|++.|+.+|+.||.|.+|+.+.| ||||.|.+.++|.+|+..+||.+|+|..|.|.++.
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 3578999999999999999999999999999988876 99999999999999999999999999999999987
Q ss_pred ch
Q 004460 133 AT 134 (752)
Q Consensus 133 s~ 134 (752)
..
T Consensus 330 P~ 331 (506)
T KOG0117|consen 330 PV 331 (506)
T ss_pred Ch
Confidence 64
No 65
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.54 E-value=7e-08 Score=100.87 Aligned_cols=77 Identities=23% Similarity=0.427 Sum_probs=72.0
Q ss_pred CCCCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004460 49 PAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (752)
Q Consensus 49 ~~~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (752)
...+..++|+||||++.++..+|+..|.+||.|..|+|+.+ |+||.|.-.+.|..|++.|++.+|.|+.|+|
T Consensus 73 sKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~v 144 (346)
T KOG0109|consen 73 SKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHV 144 (346)
T ss_pred ccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeee
Confidence 34567899999999999999999999999999999999986 9999999999999999999999999999999
Q ss_pred Eeecc
Q 004460 129 KVDQA 133 (752)
Q Consensus 129 ~~a~s 133 (752)
.++.+
T Consensus 145 q~sts 149 (346)
T KOG0109|consen 145 QLSTS 149 (346)
T ss_pred eeecc
Confidence 88765
No 66
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.53 E-value=2.4e-07 Score=101.02 Aligned_cols=80 Identities=25% Similarity=0.409 Sum_probs=74.2
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHh-hcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs-~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
...+.|||.|||+++.+.+|+.||. +.|.|..|.+..| .+|+++|||.|+|.+++.+++|++.||.+.+.|+.|.|+-
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 3456799999999999999999997 7899999999999 7999999999999999999999999999999999999975
Q ss_pred ec
Q 004460 131 DQ 132 (752)
Q Consensus 131 a~ 132 (752)
+.
T Consensus 121 d~ 122 (608)
T KOG4212|consen 121 DH 122 (608)
T ss_pred cC
Confidence 54
No 67
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.52 E-value=1.3e-07 Score=93.16 Aligned_cols=81 Identities=23% Similarity=0.421 Sum_probs=74.3
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeE-EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~-~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
..+.++|||||.+.+.+..|..+|+.||.+.. -+++.++.||.++||||+.|.+.+.+.+|+..+||..++++++.|.+
T Consensus 94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~y 173 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSY 173 (203)
T ss_pred cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEE
Confidence 34579999999999999999999999998765 46788888999999999999999999999999999999999999987
Q ss_pred ec
Q 004460 131 DQ 132 (752)
Q Consensus 131 a~ 132 (752)
+-
T Consensus 174 a~ 175 (203)
T KOG0131|consen 174 AF 175 (203)
T ss_pred EE
Confidence 75
No 68
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.51 E-value=9.3e-07 Score=89.64 Aligned_cols=84 Identities=14% Similarity=0.204 Sum_probs=68.8
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCC-CCccEEEEEeCCHHHHHHHHHHhCCceeC---CeEEE
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNG-TPKGFGFCEFESAEGVLRALRLLNKFNID---GQELM 127 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tG-k~kGfgFVeF~~~esA~~Al~~Lng~~I~---Gr~L~ 127 (752)
...+||||.+||.++..-.|..+|..|-....+.+-.....+ ..+-+||++|.+...|+.|+..|||+.|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 447899999999999999999999998666555443321222 34589999999999999999999999998 88999
Q ss_pred EEeecchH
Q 004460 128 LKVDQATR 135 (752)
Q Consensus 128 V~~a~s~k 135 (752)
|.++.++.
T Consensus 112 iElAKSNt 119 (284)
T KOG1457|consen 112 IELAKSNT 119 (284)
T ss_pred eeehhcCc
Confidence 99988753
No 69
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.47 E-value=3.6e-07 Score=93.11 Aligned_cols=84 Identities=15% Similarity=0.313 Sum_probs=76.7
Q ss_pred CCEEEEccCCCCCCHHHHHH----HHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 54 QTKVYVGKIAPTADSDFVLS----VLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~----lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
..||||.||+..+.-+.|+. +|++||.|..|... .+.+.+|=|||.|.+...|..|+..|+|+.+-|+.+.|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 44999999999999998877 99999999998765 478999999999999999999999999999999999999
Q ss_pred eecchHHHHHH
Q 004460 130 VDQATREYLER 140 (752)
Q Consensus 130 ~a~s~kk~le~ 140 (752)
|+.+..+++..
T Consensus 86 yA~s~sdii~~ 96 (221)
T KOG4206|consen 86 YAKSDSDIIAQ 96 (221)
T ss_pred cccCccchhhc
Confidence 99988887755
No 70
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=5.3e-07 Score=100.17 Aligned_cols=79 Identities=24% Similarity=0.453 Sum_probs=72.0
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+...|||.||++.++...|..+|+.||.|++|++.++ .+| ++|| ||.|.+.++|.+|+..|||..+.|++|.|...
T Consensus 74 rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~-~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~ 150 (369)
T KOG0123|consen 74 RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATD-ENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLF 150 (369)
T ss_pred cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEc-CCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeec
Confidence 34445999999999999999999999999999999998 567 9999 99999999999999999999999999999765
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 151 ~~ 152 (369)
T KOG0123|consen 151 ER 152 (369)
T ss_pred cc
Confidence 43
No 71
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.41 E-value=6.3e-07 Score=95.80 Aligned_cols=81 Identities=25% Similarity=0.377 Sum_probs=73.9
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCee--------EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVK--------SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 123 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~--------~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~G 123 (752)
...+.|||.|||.++|.+.+..+|++||-|. .|+++.+ ..|+++|-|+|.|-..+++.-|+.+|++..|.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 3466799999999999999999999999886 4788888 679999999999999999999999999999999
Q ss_pred eEEEEEeecc
Q 004460 124 QELMLKVDQA 133 (752)
Q Consensus 124 r~L~V~~a~s 133 (752)
+.|+|..+..
T Consensus 211 ~~~rVerAkf 220 (382)
T KOG1548|consen 211 KKLRVERAKF 220 (382)
T ss_pred cEEEEehhhh
Confidence 9999987754
No 72
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.38 E-value=4.3e-07 Score=104.50 Aligned_cols=92 Identities=24% Similarity=0.373 Sum_probs=80.3
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
...++.|+|.|||+.++-..|+.+|+.||.|.+|.++.-...+.++|||||.|-++..|.+|+.+|.++.|-|+.|++.|
T Consensus 610 kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 610 KKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEW 689 (725)
T ss_pred ccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheeh
Confidence 34478999999999999999999999999999999987645677899999999999999999999999999999999999
Q ss_pred ecchHHHHHHHHH
Q 004460 131 DQATREYLERYVD 143 (752)
Q Consensus 131 a~s~kk~le~~k~ 143 (752)
+..... ++....
T Consensus 690 A~~d~~-~e~~r~ 701 (725)
T KOG0110|consen 690 AKSDNT-MEALRE 701 (725)
T ss_pred hccchH-HHHHHH
Confidence 876543 444433
No 73
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.33 E-value=1.2e-06 Score=90.74 Aligned_cols=83 Identities=20% Similarity=0.344 Sum_probs=74.9
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC---CeEEEEE
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELMLK 129 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~---Gr~L~V~ 129 (752)
..++||||-|...-++++++.+|..||.|.+|.+... ..|.++||+||.|.+.-+|..||..|||-..+ ...|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 5789999999999999999999999999999999988 58999999999999999999999999997554 4679999
Q ss_pred eecchHH
Q 004460 130 VDQATRE 136 (752)
Q Consensus 130 ~a~s~kk 136 (752)
+++..+.
T Consensus 97 ~ADTdkE 103 (371)
T KOG0146|consen 97 FADTDKE 103 (371)
T ss_pred eccchHH
Confidence 9886543
No 74
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.31 E-value=1.5e-06 Score=93.04 Aligned_cols=80 Identities=20% Similarity=0.345 Sum_probs=71.3
Q ss_pred CCCCCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHH-HHhCCceeCCeEE
Q 004460 48 TPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRAL-RLLNKFNIDGQEL 126 (752)
Q Consensus 48 ~~~~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al-~~Lng~~I~Gr~L 126 (752)
++.+...+|||||+|...+++.+|+.+|.+||.|.++.+.... ++|||+|.+..+|..|. ..+|.+.|+|.+|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 4456778999999999999999999999999999999887653 69999999999999877 5678889999999
Q ss_pred EEEeecc
Q 004460 127 MLKVDQA 133 (752)
Q Consensus 127 ~V~~a~s 133 (752)
.|.|...
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999876
No 75
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.29 E-value=1.3e-06 Score=101.21 Aligned_cols=74 Identities=14% Similarity=0.254 Sum_probs=69.6
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeecc
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~s 133 (752)
++|||||+|+.++++.+|..+|..||.|.++.++.. +|||||.+....+|.+||..|+.+.+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 589999999999999999999999999999988765 48999999999999999999999999999999999864
No 76
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.28 E-value=1.2e-06 Score=90.48 Aligned_cols=93 Identities=18% Similarity=0.357 Sum_probs=80.6
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.....||+|.|.-.++.+.|-..|.+|-.....+++++..||+++|||||.|.++.++.+|+..|+|..++.+.|.+.-.
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred cchHHHHHHHHHH
Q 004460 132 QATREYLERYVDK 144 (752)
Q Consensus 132 ~s~kk~le~~k~k 144 (752)
......+...+.|
T Consensus 268 ~wkeRn~dvv~kk 280 (290)
T KOG0226|consen 268 EWKERNLDVVKKK 280 (290)
T ss_pred hHHhhhhHHHhHH
Confidence 4444444444433
No 77
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.26 E-value=1.8e-06 Score=99.41 Aligned_cols=77 Identities=29% Similarity=0.418 Sum_probs=69.7
Q ss_pred CEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCC----CCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNG----TPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tG----k~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
++|||.||++.++...|..+|...|.|.++.|...+ .+ .+.|||||+|.++++|.+|+..|+|+.|+|+.|.|.+
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkk-d~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKK-DPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccc-cccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 449999999999999999999999999999887654 23 2459999999999999999999999999999999998
Q ss_pred ec
Q 004460 131 DQ 132 (752)
Q Consensus 131 a~ 132 (752)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 87
No 78
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.25 E-value=4.6e-06 Score=93.52 Aligned_cols=76 Identities=26% Similarity=0.418 Sum_probs=65.3
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
...+|||+|||++++...|.++|..||.|....|..-.-.++..|||||+|.+..++..||. -+-+.|++++|.|+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVE 362 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEE
Confidence 35679999999999999999999999999988765532235555999999999999999998 55889999999995
No 79
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.22 E-value=3.4e-06 Score=96.87 Aligned_cols=84 Identities=25% Similarity=0.375 Sum_probs=74.9
Q ss_pred CCCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecC---CCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 004460 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP---SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126 (752)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~---~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L 126 (752)
+++..++||||||++.+++++|...|+.||+|.+++|++.+ .......||||.|-+..++.+|+..|+|..+.+..|
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 45557899999999999999999999999999999998865 224567899999999999999999999999999999
Q ss_pred EEEeecc
Q 004460 127 MLKVDQA 133 (752)
Q Consensus 127 ~V~~a~s 133 (752)
.+.|..+
T Consensus 250 K~gWgk~ 256 (877)
T KOG0151|consen 250 KLGWGKA 256 (877)
T ss_pred eeccccc
Confidence 9998843
No 80
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.21 E-value=9.9e-07 Score=95.45 Aligned_cols=80 Identities=24% Similarity=0.426 Sum_probs=71.5
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
..++||||+|++.++++.|+.+|++||.|..|.++.++.+|.++||+||+|.++..+..+|. ...+.|+|+.|.++.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 57899999999999999999999999999999999999999999999999999999888876 45567888887776554
Q ss_pred c
Q 004460 133 A 133 (752)
Q Consensus 133 s 133 (752)
+
T Consensus 84 ~ 84 (311)
T KOG4205|consen 84 S 84 (311)
T ss_pred C
Confidence 4
No 81
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.15 E-value=6.9e-06 Score=85.94 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=74.5
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
....++|+|.||++.|...+|+++|..||.+..+.+.++ .+|.+.|.|-|.|...++|.+|+..||++.++|+.|.+.+
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 444689999999999999999999999999999999888 5999999999999999999999999999999999988865
Q ss_pred ec
Q 004460 131 DQ 132 (752)
Q Consensus 131 a~ 132 (752)
..
T Consensus 159 i~ 160 (243)
T KOG0533|consen 159 IS 160 (243)
T ss_pred ec
Confidence 44
No 82
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.15 E-value=4.3e-06 Score=91.56 Aligned_cols=77 Identities=21% Similarity=0.264 Sum_probs=70.0
Q ss_pred CCCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
.....|+|||.|||+++|+..|+.-|..||.|..+.|+ .+|+++| .|.|.+++.|.+||..|++..|+|+.|.|.
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVT 606 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeee
Confidence 34568999999999999999999999999999999884 3688877 899999999999999999999999999997
Q ss_pred ee
Q 004460 130 VD 131 (752)
Q Consensus 130 ~a 131 (752)
|+
T Consensus 607 y~ 608 (608)
T KOG4212|consen 607 YF 608 (608)
T ss_pred eC
Confidence 63
No 83
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=4.6e-06 Score=92.76 Aligned_cols=77 Identities=19% Similarity=0.364 Sum_probs=70.4
Q ss_pred CEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeecch
Q 004460 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 134 (752)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~s~ 134 (752)
..|||| +++++..|..+|+.+|+|.+++++.+. | +.|||||.|.++.+|.+||..||...|.|+.|+|-|..-.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368999 899999999999999999999999995 4 9999999999999999999999999999999999987654
Q ss_pred HHH
Q 004460 135 REY 137 (752)
Q Consensus 135 kk~ 137 (752)
..+
T Consensus 76 ~~~ 78 (369)
T KOG0123|consen 76 PSL 78 (369)
T ss_pred Cce
Confidence 333
No 84
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.09 E-value=4.2e-06 Score=87.38 Aligned_cols=82 Identities=24% Similarity=0.383 Sum_probs=75.6
Q ss_pred CCCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
...+.+.|||||+.+.++...+...|..||.|..+.+..+..+|.++||+||+|.+...+..++. |++..|.|..+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 34568899999999999999999999999999999999998888999999999999999999999 99999999999886
Q ss_pred eec
Q 004460 130 VDQ 132 (752)
Q Consensus 130 ~a~ 132 (752)
+-.
T Consensus 176 ~~r 178 (231)
T KOG4209|consen 176 LKR 178 (231)
T ss_pred eee
Confidence 443
No 85
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.05 E-value=6.4e-06 Score=93.57 Aligned_cols=84 Identities=23% Similarity=0.432 Sum_probs=77.7
Q ss_pred CCCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
.....+.||||+||..++...+.+++..||.+....++.+..+|.++||+||+|+++.-...|+..|||..+++++|.|.
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 34457889999999999999999999999999999999999899999999999999999999999999999999999997
Q ss_pred eecc
Q 004460 130 VDQA 133 (752)
Q Consensus 130 ~a~s 133 (752)
.+-.
T Consensus 365 ~A~~ 368 (500)
T KOG0120|consen 365 RAIV 368 (500)
T ss_pred hhhc
Confidence 6543
No 86
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.92 E-value=1.2e-05 Score=87.09 Aligned_cols=80 Identities=20% Similarity=0.376 Sum_probs=73.4
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
....||||+||.++++.+++.+|.+||.|..+.++.|..+..++|||||.|.+.+++..++. .+-+.|+|+.+.|..+.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 35699999999999999999999999999999999999999999999999999999998887 78888999999987665
Q ss_pred c
Q 004460 133 A 133 (752)
Q Consensus 133 s 133 (752)
.
T Consensus 175 p 175 (311)
T KOG4205|consen 175 P 175 (311)
T ss_pred c
Confidence 4
No 87
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.92 E-value=5.1e-06 Score=84.19 Aligned_cols=77 Identities=14% Similarity=0.153 Sum_probs=71.0
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
..||||+|+...++++.|.++|-+.|+|..+.|..+ ..++.+ |+||.|.+..++.-|+.++||..+-+..|.|.+-.
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~-~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSG-QDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCC-ccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 689999999999999999999999999999999887 577777 99999999999999999999999999998887644
No 88
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.82 E-value=1.6e-05 Score=81.74 Aligned_cols=71 Identities=25% Similarity=0.421 Sum_probs=64.6
Q ss_pred CEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeecc
Q 004460 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (752)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~s 133 (752)
..||||+||+.+.+.+|..||..||.+..+.+.. |||||+|.+.-.|.-||..||+..|+|-.+.|.++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 4699999999999999999999999999987743 6999999999999999999999999998888877664
No 89
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.79 E-value=0.00018 Score=65.43 Aligned_cols=78 Identities=15% Similarity=0.224 Sum_probs=67.5
Q ss_pred CEEEEccCCCCCCHHHHHHHHhh--cCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC----CeEEEE
Q 004460 55 TKVYVGKIAPTADSDFVLSVLKV--CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID----GQELML 128 (752)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lFs~--~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~----Gr~L~V 128 (752)
+||.|.|||-..+...|..++.. .|..--+.++.|..++.+.|||||.|.++..|......++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 79999999999999999998874 366667788888889999999999999999999999999999886 456677
Q ss_pred Eeec
Q 004460 129 KVDQ 132 (752)
Q Consensus 129 ~~a~ 132 (752)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7663
No 90
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.65 E-value=6.4e-05 Score=85.15 Aligned_cols=72 Identities=22% Similarity=0.399 Sum_probs=64.4
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~ 127 (752)
..+..+|+|-|||..|+.+.|..+|+.||.|+.+.. |-...|.+||+|-+.-.|.+|+..|++..|.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 456789999999999999999999999999999643 445678999999999999999999999999888776
No 91
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.61 E-value=0.00019 Score=77.73 Aligned_cols=82 Identities=15% Similarity=0.241 Sum_probs=73.1
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCee--------EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVK--------SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~--------~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~ 122 (752)
.....+|||-+||..++.+.|..+|.+||.|. .+.|.++..|+.+++=|.|+|.++..|+.||..+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44577999999999999999999999999885 3567888899999999999999999999999999999999
Q ss_pred CeEEEEEeec
Q 004460 123 GQELMLKVDQ 132 (752)
Q Consensus 123 Gr~L~V~~a~ 132 (752)
+.+|.|.++.
T Consensus 143 gn~ikvs~a~ 152 (351)
T KOG1995|consen 143 GNTIKVSLAE 152 (351)
T ss_pred CCCchhhhhh
Confidence 9888775443
No 92
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.57 E-value=0.00066 Score=74.52 Aligned_cols=75 Identities=13% Similarity=0.240 Sum_probs=67.0
Q ss_pred CCEEEEccCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 54 QTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 54 ~~tVfVgNLp~-~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
.+.|.|.||.. .+|.+.|..+|+.||.|.+++|..+.. --|+|.|.+...|.-|+.+|+|..|.|++|+|.++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57888888866 788999999999999999999988632 579999999999999999999999999999998765
Q ss_pred c
Q 004460 133 A 133 (752)
Q Consensus 133 s 133 (752)
-
T Consensus 372 H 372 (492)
T KOG1190|consen 372 H 372 (492)
T ss_pred C
Confidence 4
No 93
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=97.43 E-value=0.0052 Score=71.34 Aligned_cols=34 Identities=35% Similarity=0.642 Sum_probs=27.2
Q ss_pred CCccccCccCCCCCCcchhhcccCCCcccccCChH
Q 004460 510 GKRTAVPSVFHVEDDDDADKDKKMRPLVPIDYSTE 544 (752)
Q Consensus 510 ~kr~~v~~vf~~~ddee~~~~~~kr~LvPi~y~~~ 544 (752)
.+.+.|.+||+.++|.|-+--.++ +||||+|+..
T Consensus 514 ~kk~~~~~v~~~~~d~Dk~v~~~k-k~vp~dyd~n 547 (668)
T KOG2253|consen 514 KKKLPETGVFREDDDEDKNVHEKK-KLVPLDYDRN 547 (668)
T ss_pred cccCCCcccccccCCcccccchhh-hcccccCChh
Confidence 356789999999998885555555 9999999985
No 94
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.31 E-value=9.9e-05 Score=83.50 Aligned_cols=84 Identities=18% Similarity=0.292 Sum_probs=78.1
Q ss_pred CCCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
.....+|||+-.|+-.++..+|..||+.+|.|..+.++.+..++.++|.|||+|++.+++..||. |.|.-+.|.+|.|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEec
Confidence 45678999999999999999999999999999999999999999999999999999999999996 99999999999997
Q ss_pred eecch
Q 004460 130 VDQAT 134 (752)
Q Consensus 130 ~a~s~ 134 (752)
...+.
T Consensus 254 ~sEae 258 (549)
T KOG0147|consen 254 LSEAE 258 (549)
T ss_pred ccHHH
Confidence 66653
No 95
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.28 E-value=0.00088 Score=73.18 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=61.3
Q ss_pred CEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCC---CCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPS---NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~---tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
..|-|.||++.++.+.|+.||+..|.|..+.++-+.. -......|||-|.+...+..|-.+-|-+.|+--.|++-|.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 3789999999999999999999999999998876432 2234578999999999998887744444454444455454
Q ss_pred cchHHH
Q 004460 132 QATREY 137 (752)
Q Consensus 132 ~s~kk~ 137 (752)
+...-|
T Consensus 88 ~~~~p~ 93 (479)
T KOG4676|consen 88 DEVIPD 93 (479)
T ss_pred CCCCcc
Confidence 444333
No 96
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.16 E-value=0.00079 Score=72.45 Aligned_cols=95 Identities=22% Similarity=0.302 Sum_probs=77.1
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G--~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (752)
......+|||||-+++|+.+|.+.+...| .+..+++..++.+|.++||+++...+..++...+.+|....|+|..-.|
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 34456799999999999999999888777 5677888889999999999999999999999999999999999876444
Q ss_pred -EeecchHHHHHHHHHHh
Q 004460 129 -KVDQATREYLERYVDKK 145 (752)
Q Consensus 129 -~~a~s~kk~le~~k~kk 145 (752)
.+.......++...+|.
T Consensus 157 ~~~NK~~~ak~E~~~~K~ 174 (498)
T KOG4849|consen 157 LSYNKTNQAKLEDAQAKN 174 (498)
T ss_pred eccchhhHHHHHHHHhhh
Confidence 45555555555555544
No 97
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.14 E-value=0.0018 Score=57.10 Aligned_cols=70 Identities=19% Similarity=0.292 Sum_probs=48.8
Q ss_pred CEEEEccCCCCCCHHH----HHHHHhhcC-CeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 55 TKVYVGKIAPTADSDF----VLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 55 ~tVfVgNLp~~vte~~----L~~lFs~~G-~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
+.|||.|||.+..... |++|+..|| .|..+. .+.|++-|.+++.|.+|..-|+|-.+-|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4699999999998765 567777886 666652 2689999999999999999999999999999999
Q ss_pred eecch
Q 004460 130 VDQAT 134 (752)
Q Consensus 130 ~a~s~ 134 (752)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 87654
No 98
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.05 E-value=0.0083 Score=65.43 Aligned_cols=78 Identities=22% Similarity=0.261 Sum_probs=67.7
Q ss_pred CCCCCCEEEEccCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004460 50 AEKPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (752)
Q Consensus 50 ~~~~~~tVfVgNLp~-~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (752)
...+++.+.|-+|.. .++.+.|..+|+.||.|..+++++.. .|-|.|++-+...+.+||.+||+..+-|.+|.|
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 455688999999987 55667899999999999999998763 268999999999999999999999999999998
Q ss_pred Eeec
Q 004460 129 KVDQ 132 (752)
Q Consensus 129 ~~a~ 132 (752)
.++.
T Consensus 358 ~~Sk 361 (494)
T KOG1456|consen 358 CVSK 361 (494)
T ss_pred eecc
Confidence 7654
No 99
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.02 E-value=0.0034 Score=72.79 Aligned_cols=78 Identities=18% Similarity=0.214 Sum_probs=66.4
Q ss_pred CCCC-EEEEccCCCCCCHHHHHHHHhhcCCee-EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 52 KPQT-KVYVGKIAPTADSDFVLSVLKVCGTVK-SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 52 ~~~~-tVfVgNLp~~vte~~L~~lFs~~G~I~-~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
.+++ .|-|.|+|++++-++|..||.-|-.+- +|.+-.+ ..|++.|-|.|.|++.+.|.+|..-|++..|..+++.|.
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 3444 778999999999999999999997654 4444444 789999999999999999999999999999999998875
Q ss_pred e
Q 004460 130 V 130 (752)
Q Consensus 130 ~ 130 (752)
+
T Consensus 943 i 943 (944)
T KOG4307|consen 943 I 943 (944)
T ss_pred e
Confidence 3
No 100
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.01 E-value=0.0011 Score=77.54 Aligned_cols=10 Identities=0% Similarity=-0.173 Sum_probs=4.5
Q ss_pred EccCCCCCCH
Q 004460 59 VGKIAPTADS 68 (752)
Q Consensus 59 VgNLp~~vte 68 (752)
+-.||++...
T Consensus 607 aPvlP~gLkp 616 (1102)
T KOG1924|consen 607 APVLPFGLKP 616 (1102)
T ss_pred cccCCCCCCc
Confidence 3345554443
No 101
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=96.88 E-value=0.0018 Score=66.33 Aligned_cols=66 Identities=15% Similarity=0.226 Sum_probs=54.8
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 121 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I 121 (752)
..+.||||.||..+|+++.|+.+|+.|.....++|.. ...-+.+|+.|++.+.|..|+..|.|..|
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~----~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA----RGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec----CCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 4467999999999999999999999997666666532 12335899999999999999999998766
No 102
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.85 E-value=0.00071 Score=70.44 Aligned_cols=88 Identities=26% Similarity=0.290 Sum_probs=67.4
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC--------CCCc----cEEEEEeCCHHHHHHHHHHhCCce
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN--------GTPK----GFGFCEFESAEGVLRALRLLNKFN 120 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~t--------Gk~k----GfgFVeF~~~esA~~Al~~Lng~~ 120 (752)
..-.||+++||+.+...-|+.+|++||.|-++.+.....+ |.+. .=|+|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3468999999999999999999999999999987654323 2222 238899999999999999999999
Q ss_pred eCCeEE-EEEeecchHHHHHH
Q 004460 121 IDGQEL-MLKVDQATREYLER 140 (752)
Q Consensus 121 I~Gr~L-~V~~a~s~kk~le~ 140 (752)
|+|++- .+..+.-+.+||..
T Consensus 153 Iggkk~S~~~~dlWNmKYLpr 173 (278)
T KOG3152|consen 153 IGGKKKSPFRDDLWNMKYLPR 173 (278)
T ss_pred cCCCCCCchHHhhhhhhhccC
Confidence 998763 23333445555543
No 103
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.23 Score=58.97 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=6.0
Q ss_pred HHHHHhhCCCCC
Q 004460 219 MVEERLKTNPLP 230 (752)
Q Consensus 219 ~~eer~~~~~~~ 230 (752)
+|+-...+-++|
T Consensus 257 liema~sGq~lP 268 (1118)
T KOG1029|consen 257 LIEMAKSGQPLP 268 (1118)
T ss_pred HHHHHhcCCCCC
Confidence 454445555544
No 104
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.74 E-value=0.0045 Score=69.65 Aligned_cols=75 Identities=21% Similarity=0.372 Sum_probs=64.1
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
...-|-+.+||+.||+.+|..||+.|+ |..+.+.. .+|++.|=|||+|.+.+++..|++ .+...++.+-|.|..+
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 456677899999999999999999997 66655444 589999999999999999999999 7888888888888644
No 105
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.72 E-value=0.00083 Score=72.47 Aligned_cols=80 Identities=23% Similarity=0.388 Sum_probs=71.6
Q ss_pred CCCEEE-EccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 53 PQTKVY-VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 53 ~~~tVf-VgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
+..++| |+++++.++.+.|+.+|..||.|..+++..++.+|.+.||||+.|........++.. ....+.+..+.|..+
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 345565 999999999999999999999999999999999999999999999999999999886 788899999998765
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 262 ~~ 263 (285)
T KOG4210|consen 262 EP 263 (285)
T ss_pred CC
Confidence 43
No 106
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.71 E-value=0.0056 Score=56.52 Aligned_cols=86 Identities=19% Similarity=0.325 Sum_probs=52.8
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC-----CceeCCeEEEE
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN-----KFNIDGQELML 128 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Ln-----g~~I~Gr~L~V 128 (752)
++.|+|.+++..++..+|+.+|+.||.|..|.+..+- .-|||-|.+++.|..|+..+. ++.|.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 4679999999999999999999999999998876542 479999999999999997663 44677777666
Q ss_pred Eee--cchHHHHHHHHHHh
Q 004460 129 KVD--QATREYLERYVDKK 145 (752)
Q Consensus 129 ~~a--~s~kk~le~~k~kk 145 (752)
.+- ..-..|..+..+.+
T Consensus 75 ~vLeGeeE~~Yw~ki~e~~ 93 (105)
T PF08777_consen 75 EVLEGEEEEEYWKKIIEDR 93 (105)
T ss_dssp E---HHHHHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHH
Confidence 654 34466776666544
No 107
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.67 E-value=0.0026 Score=74.63 Aligned_cols=6 Identities=33% Similarity=0.767 Sum_probs=2.4
Q ss_pred hhhhHH
Q 004460 397 WRRSVL 402 (752)
Q Consensus 397 ~r~~~~ 402 (752)
++-.|+
T Consensus 985 Frnaf~ 990 (1102)
T KOG1924|consen 985 FRNAFL 990 (1102)
T ss_pred HHHHHH
Confidence 344443
No 108
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.42 E-value=0.0099 Score=67.83 Aligned_cols=77 Identities=18% Similarity=0.282 Sum_probs=63.4
Q ss_pred CCCCEEEEccCCCCCCH------HHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC-Ce
Q 004460 52 KPQTKVYVGKIAPTADS------DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQ 124 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte------~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~-Gr 124 (752)
.-..-|+|.|+|---.. ..|..+|+++|++....++.+. .|..+||.|++|.+..+|..|+..|||..|+ ++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 33567889999864332 2467899999999999998885 5559999999999999999999999999998 66
Q ss_pred EEEEE
Q 004460 125 ELMLK 129 (752)
Q Consensus 125 ~L~V~ 129 (752)
++.|.
T Consensus 135 tf~v~ 139 (698)
T KOG2314|consen 135 TFFVR 139 (698)
T ss_pred eEEee
Confidence 77764
No 109
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.41 E-value=0.0037 Score=71.56 Aligned_cols=78 Identities=13% Similarity=0.185 Sum_probs=64.1
Q ss_pred CCCCCCEEEEccCCCCCCHHHHHHHHh-hcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee---CCeE
Q 004460 50 AEKPQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI---DGQE 125 (752)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lFs-~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I---~Gr~ 125 (752)
....++.|||.||-.-+|...|+.+|+ .||.|... +.| +.+..|||.|.+.+.|.+...+|||+.+ +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmD----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMD----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHH----HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 445688999999999999999999999 67777665 334 4567999999999999999999999976 3667
Q ss_pred EEEEeecc
Q 004460 126 LMLKVDQA 133 (752)
Q Consensus 126 L~V~~a~s 133 (752)
|.+.|+..
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 77776653
No 110
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.30 E-value=0.019 Score=59.13 Aligned_cols=78 Identities=17% Similarity=0.300 Sum_probs=66.6
Q ss_pred CCCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEE
Q 004460 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELML 128 (752)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~-Gr~L~V 128 (752)
..++..++|+.|||..++.+.+..+|.+|+....+.++... .+.+||+|.+...+..|...|.++.|- ...+.|
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i 216 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQI 216 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEe
Confidence 35568899999999999999999999999999998887642 379999999999999999999999887 677777
Q ss_pred Eeec
Q 004460 129 KVDQ 132 (752)
Q Consensus 129 ~~a~ 132 (752)
.++.
T Consensus 217 ~~a~ 220 (221)
T KOG4206|consen 217 TFAK 220 (221)
T ss_pred cccC
Confidence 6543
No 111
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.25 E-value=0.0029 Score=69.30 Aligned_cols=64 Identities=13% Similarity=-0.026 Sum_probs=52.8
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~ 122 (752)
..||+|++|+..+....+..+|..+|.|....+ ..|....+|.+.|+...+...|+. ++|..+.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~----ask~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHT----ASKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhh----hccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 478999999999999999999999999987655 345555678899999988888888 6776654
No 112
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.22 E-value=0.0044 Score=68.62 Aligned_cols=79 Identities=24% Similarity=0.403 Sum_probs=62.9
Q ss_pred CCCCCCCCCCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeec---CCC--CCC--------ccEEEEEeCCHHHH
Q 004460 43 PLPTVTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQY---PSN--GTP--------KGFGFCEFESAEGV 109 (752)
Q Consensus 43 ~~p~~~~~~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d---~~t--Gk~--------kGfgFVeF~~~esA 109 (752)
++|......-+++||.+-|||.+-.-+.|..||+.||.|..|+|+.. +.+ |.+ +-|+||+|...+.|
T Consensus 220 Plp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A 299 (484)
T KOG1855|consen 220 PLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAA 299 (484)
T ss_pred CCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHH
Confidence 34444445567899999999999999999999999999999998875 322 211 56899999999999
Q ss_pred HHHHHHhCCcee
Q 004460 110 LRALRLLNKFNI 121 (752)
Q Consensus 110 ~~Al~~Lng~~I 121 (752)
.+|...|+....
T Consensus 300 ~KA~e~~~~e~~ 311 (484)
T KOG1855|consen 300 RKARELLNPEQN 311 (484)
T ss_pred HHHHHhhchhhh
Confidence 999998866543
No 113
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.95 E-value=0.022 Score=61.49 Aligned_cols=88 Identities=18% Similarity=0.246 Sum_probs=66.3
Q ss_pred CCEEEEccCCCCCCHHH------HHHHHhhcCCeeEEEEeecC-CCCCCcc-E-EEEEeCCHHHHHHHHHHhCCceeCCe
Q 004460 54 QTKVYVGKIAPTADSDF------VLSVLKVCGTVKSWKRAQYP-SNGTPKG-F-GFCEFESAEGVLRALRLLNKFNIDGQ 124 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~------L~~lFs~~G~I~~~ki~~d~-~tGk~kG-f-gFVeF~~~esA~~Al~~Lng~~I~Gr 124 (752)
..-|||-+||+.+..+. -.++|++||.|..+.+-... ....-.+ + .||+|.+.++|.+||..++|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 35689999999887765 24799999999988764431 0111112 2 39999999999999999999999999
Q ss_pred EEEEEeecchHHHHHHHHH
Q 004460 125 ELMLKVDQATREYLERYVD 143 (752)
Q Consensus 125 ~L~V~~a~s~kk~le~~k~ 143 (752)
.|...| .+.+|...|..
T Consensus 194 ~lkatY--GTTKYCtsYLR 210 (480)
T COG5175 194 VLKATY--GTTKYCTSYLR 210 (480)
T ss_pred eEeeec--CchHHHHHHHc
Confidence 988755 45677777764
No 114
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=95.91 E-value=0.0057 Score=63.18 Aligned_cols=70 Identities=19% Similarity=0.330 Sum_probs=62.0
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (752)
....+.++|-|++..+...+|...|+.+|.+....+ ..+|+||.|....++..|+..|++..+.++.|.+
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 445788999999999999999999999999944333 3369999999999999999999999999999998
No 115
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.62 E-value=0.031 Score=63.50 Aligned_cols=63 Identities=21% Similarity=0.374 Sum_probs=59.3
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHh-hcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHH
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALR 114 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs-~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~ 114 (752)
.+..|||||+||--++...|-.+|. .||.|..+.|=+|+.-+.++|-|-|+|.+..+-.+||.
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 4578999999999999999999999 79999999999998889999999999999999999996
No 116
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=95.40 E-value=0.076 Score=57.81 Aligned_cols=79 Identities=13% Similarity=0.188 Sum_probs=62.5
Q ss_pred CCCCEEEEccCCC----CCCH-------HHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce
Q 004460 52 KPQTKVYVGKIAP----TADS-------DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 120 (752)
Q Consensus 52 ~~~~tVfVgNLp~----~vte-------~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~ 120 (752)
...+||.|.||=. ..+. ++|..-+.+||.|.++.+.- ..+.|.+-|.|.+.+.|..||..|+|..
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 4467898988733 2232 34556688999999998753 3567999999999999999999999999
Q ss_pred eCCeEEEEEeecch
Q 004460 121 IDGQELMLKVDQAT 134 (752)
Q Consensus 121 I~Gr~L~V~~a~s~ 134 (752)
|+|+.|.-.+....
T Consensus 339 fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 339 FDGRQLTASIWDGK 352 (382)
T ss_pred ecceEEEEEEeCCc
Confidence 99999998776653
No 117
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.37 E-value=0.068 Score=52.05 Aligned_cols=75 Identities=23% Similarity=0.351 Sum_probs=51.9
Q ss_pred CCCEEEEccCC-----C-CCCH---HHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 004460 53 PQTKVYVGKIA-----P-TADS---DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 123 (752)
Q Consensus 53 ~~~tVfVgNLp-----~-~vte---~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~G 123 (752)
+..||.|.-+. . ...+ ..|.+.|..||.+.-++++.+ .-+|+|.+-.+|++|+. |+|..|+|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g 96 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNG 96 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETT
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECC
Confidence 45677776555 1 2222 267778889999988877654 68999999999999999 99999999
Q ss_pred eEEEEEeecchHHHH
Q 004460 124 QELMLKVDQATREYL 138 (752)
Q Consensus 124 r~L~V~~a~s~kk~l 138 (752)
+.|.|.+ ++..++
T Consensus 97 ~~l~i~L--KtpdW~ 109 (146)
T PF08952_consen 97 RTLKIRL--KTPDWL 109 (146)
T ss_dssp EEEEEEE--------
T ss_pred EEEEEEe--CCccHH
Confidence 9988864 334444
No 118
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=95.27 E-value=0.054 Score=61.32 Aligned_cols=75 Identities=19% Similarity=0.172 Sum_probs=61.3
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeE-EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~-~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
+...|-+.+||+.|++.+|.+||+..-.|.. +.++.+ ..|.+.|=+||.|++.+.|+.||. -|...|+.+-|.|.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF 177 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVF 177 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEee
Confidence 4567889999999999999999997654443 445566 478899999999999999999997 67777877777764
No 119
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.00 E-value=0.13 Score=58.67 Aligned_cols=65 Identities=23% Similarity=0.373 Sum_probs=47.5
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCe-eEEEEeecC-CCCCCcc---EEEEEeCCHHHHHHHHHHh
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTV-KSWKRAQYP-SNGTPKG---FGFCEFESAEGVLRALRLL 116 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I-~~~ki~~d~-~tGk~kG---fgFVeF~~~esA~~Al~~L 116 (752)
.-++.||||+||++++++.|...|..||.+ +.|-.-... .---++| |.|+.|++..++...|...
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 346899999999999999999999999976 345321110 1112455 9999999998877766433
No 120
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.88 E-value=0.13 Score=47.20 Aligned_cols=77 Identities=19% Similarity=0.142 Sum_probs=51.8
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecC-------CCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP-------SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~-------~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L 126 (752)
.+.|.|-+.|+. ....|...|++||.|....-+... .......+-.|.|.++.+|.+||. .||..|+|..|
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 456778888887 456788899999999887411110 011234688999999999999999 89999998654
Q ss_pred -EEEeec
Q 004460 127 -MLKVDQ 132 (752)
Q Consensus 127 -~V~~a~ 132 (752)
-|.+++
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 466554
No 121
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=94.55 E-value=0.11 Score=57.53 Aligned_cols=79 Identities=15% Similarity=0.221 Sum_probs=66.2
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCe-EEEEEe
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-ELMLKV 130 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr-~L~V~~ 130 (752)
+++.++...|||..+++++|+.+|...|........ -++.+.++++.+.+.+.|..|+..+|.+.+++. -|+|.|
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 457799999999999999999999998876555432 245667999999999999999999999999855 899998
Q ss_pred ecch
Q 004460 131 DQAT 134 (752)
Q Consensus 131 a~s~ 134 (752)
+.++
T Consensus 488 Sks~ 491 (492)
T KOG1190|consen 488 SKST 491 (492)
T ss_pred eccc
Confidence 8653
No 122
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.19 E-value=0.098 Score=62.93 Aligned_cols=82 Identities=12% Similarity=0.231 Sum_probs=69.4
Q ss_pred CCCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEE
Q 004460 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELM 127 (752)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~G--r~L~ 127 (752)
...+.+.+|||+|..++....|...|..||.|..|.+-+ ...|++|.|++...++.|+..|.|+.|+| +.|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 345578899999999999999999999999999876543 34699999999999999999999999985 6788
Q ss_pred EEeecchHHH
Q 004460 128 LKVDQATREY 137 (752)
Q Consensus 128 V~~a~s~kk~ 137 (752)
|.|+...-.+
T Consensus 525 vdla~~~~~~ 534 (975)
T KOG0112|consen 525 VDLASPPGAT 534 (975)
T ss_pred cccccCCCCC
Confidence 8887654333
No 123
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=93.96 E-value=0.21 Score=58.72 Aligned_cols=76 Identities=13% Similarity=0.120 Sum_probs=65.3
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeE-EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~-~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
.+..|||-.||..++...+..+|...-.|.. |.|...+ +++..+-|||.|..+..+..|+..-+.+.++.+.|.|.
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 4678999999999999999999998777766 6666664 88899999999999999999988778888888888885
No 124
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=93.51 E-value=0.18 Score=40.77 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=41.1
Q ss_pred CEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHH
Q 004460 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRAL 113 (752)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al 113 (752)
+.|-|.+.+..... .+...|..||.|..+.+. ....+.|+.|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 56788888877764 455588899999998775 22359999999999999885
No 125
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=93.34 E-value=0.22 Score=57.47 Aligned_cols=64 Identities=20% Similarity=0.186 Sum_probs=52.7
Q ss_pred HHHHHHhhcCCeeEEEEeec-C--CCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeecc
Q 004460 70 FVLSVLKVCGTVKSWKRAQY-P--SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (752)
Q Consensus 70 ~L~~lFs~~G~I~~~ki~~d-~--~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~s 133 (752)
+|+.-+++||.|..|.+... . ...-+.|.-||+|.+.+++.+|+..|+|..+.|+.+...|.+.
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 34455678999999998775 2 3345678899999999999999999999999999998887653
No 126
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.08 E-value=0.063 Score=64.51 Aligned_cols=79 Identities=9% Similarity=0.086 Sum_probs=65.9
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
....|||+|||...++...|+..|..+|.|..+.|-+. .-+..-.||||.|.+...+..|+..+.+..|....+.+.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP-~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTP-HIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccC-CCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 34689999999999999999999999999999887553 34566689999999999999999888888877555555544
No 127
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=92.84 E-value=0.041 Score=65.70 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=69.0
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeecc
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~s 133 (752)
...|||.|.|+..|.+.++.+|..+|.+.+..+++. ..|+++|.+||.|.+...+.+++.......+.-..+.|.+.+.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 357999999999999999999999999999998887 6999999999999999999999987777777766666665544
No 128
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=92.75 E-value=0.54 Score=47.44 Aligned_cols=65 Identities=18% Similarity=0.258 Sum_probs=58.2
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~ 122 (752)
-.....|.|.+||+..++.+|+......|.|....+..| |+|.|+|...++..-||+.|....+.
T Consensus 112 rrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 112 RRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 344678999999999999999999999999999998888 69999999999999999989876554
No 129
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=92.68 E-value=0.013 Score=69.89 Aligned_cols=77 Identities=13% Similarity=0.201 Sum_probs=63.0
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (752)
...+++||.||+..+...+|...|+.+|.+..+.+.....+|.++|+||+.|..++.+.+||....+..++...+.|
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i 741 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAI 741 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhe
Confidence 34578999999999999999999999998877776655578999999999999999999999855555555434333
No 130
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=92.56 E-value=0.32 Score=53.69 Aligned_cols=75 Identities=17% Similarity=0.161 Sum_probs=62.7
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhcCC-eeE--EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVCGT-VKS--WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~G~-I~~--~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
...|-+.+||+.++-++|..||.-|.. |.. +.++.+ ..|.+.|-+||.|.+.+.|..|....|.....++.|.|.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 445778999999999999999998864 333 677777 689999999999999999999998788777667777764
No 131
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=91.91 E-value=0.94 Score=56.89 Aligned_cols=21 Identities=14% Similarity=0.242 Sum_probs=10.4
Q ss_pred CCCCchhhhcccccccccchh
Q 004460 650 IPKTKEELFSYEINWAVYDKH 670 (752)
Q Consensus 650 ip~~k~~lf~~~v~w~~vd~~ 670 (752)
|..-|..+++-.++=..+.+.
T Consensus 874 ~~~~~~~~~~~~~~~~~~~~~ 894 (1021)
T PTZ00266 874 INAKKASIYNNTCDEGTLSKK 894 (1021)
T ss_pred hhhhhhhhhhhcccccccccc
Confidence 444455555555555555443
No 132
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=91.58 E-value=0.2 Score=52.78 Aligned_cols=62 Identities=19% Similarity=0.304 Sum_probs=57.1
Q ss_pred CEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 004460 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 117 (752)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Ln 117 (752)
..|||.||+..++.+.+...|+.||.|....++.| ..|++.+=|+|.|...-.+..|++.++
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhc
Confidence 67999999999999999999999999998887777 689999999999999999999998774
No 133
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=91.07 E-value=0.25 Score=55.00 Aligned_cols=73 Identities=15% Similarity=0.253 Sum_probs=57.0
Q ss_pred CEEEEccCCCCCCHHHHHHHHhhcCC-eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCc-eeCCeEEEEEeec
Q 004460 55 TKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF-NIDGQELMLKVDQ 132 (752)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lFs~~G~-I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~-~I~Gr~L~V~~a~ 132 (752)
..+|+|||++.++..+|..+|..... ...-.++.. ||+||.+.+...+.+|+..|+|. ++.|+.+.|....
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~-------gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS-------GYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeec-------ceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 46899999999999999999985421 112223333 89999999999999999999886 6789998887655
Q ss_pred ch
Q 004460 133 AT 134 (752)
Q Consensus 133 s~ 134 (752)
..
T Consensus 75 ~k 76 (584)
T KOG2193|consen 75 PK 76 (584)
T ss_pred hH
Confidence 43
No 134
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.06 E-value=8.2 Score=46.56 Aligned_cols=9 Identities=11% Similarity=0.250 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 004460 135 REYLERYVD 143 (752)
Q Consensus 135 kk~le~~k~ 143 (752)
.+|-..|.+
T Consensus 195 lKY~QlFNa 203 (1118)
T KOG1029|consen 195 LKYRQLFNA 203 (1118)
T ss_pred hHHHHHhhh
Confidence 334444433
No 135
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=91.00 E-value=2.5 Score=53.24 Aligned_cols=8 Identities=25% Similarity=0.289 Sum_probs=3.7
Q ss_pred HHHHHhCC
Q 004460 111 RALRLLNK 118 (752)
Q Consensus 111 ~Al~~Lng 118 (752)
.||..||.
T Consensus 129 ~ALaYLHs 136 (1021)
T PTZ00266 129 HALAYCHN 136 (1021)
T ss_pred HHHHHHHh
Confidence 34444553
No 136
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=90.97 E-value=0.64 Score=49.81 Aligned_cols=64 Identities=22% Similarity=0.134 Sum_probs=51.4
Q ss_pred HHHHHHHhhcCCeeEEEEeecCCCCCC-ccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 69 DFVLSVLKVCGTVKSWKRAQYPSNGTP-KGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 69 ~~L~~lFs~~G~I~~~ki~~d~~tGk~-kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
+.+..-+.+||.|..|.|...+..... ..--||+|+..++|.+|+--|||..|+|+.+.-.|.+
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 357778889999999988776533222 4568999999999999999999999999997765543
No 137
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=90.57 E-value=0.48 Score=52.40 Aligned_cols=78 Identities=24% Similarity=0.315 Sum_probs=59.3
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhh-c---CCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKV-C---GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~-~---G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
...|-+.+||++++..++..||.. | |.+..+-+++. .+|++.|-+||.|...+.|..||. -|...|
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~-khrq~i-------- 230 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALR-KHRQNI-------- 230 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHH-HHHHHH--------
Confidence 456778999999999999999973 2 24456666665 489999999999999999999997 343333
Q ss_pred eecchHHHHHHHHHHh
Q 004460 130 VDQATREYLERYVDKK 145 (752)
Q Consensus 130 ~a~s~kk~le~~k~kk 145 (752)
.+.|++-+...+
T Consensus 231 ----GqRYIElFRSTa 242 (508)
T KOG1365|consen 231 ----GQRYIELFRSTA 242 (508)
T ss_pred ----hHHHHHHHHHhH
Confidence 245776666544
No 138
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.51 E-value=2.4 Score=45.88 Aligned_cols=64 Identities=25% Similarity=0.284 Sum_probs=48.6
Q ss_pred CEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 004460 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126 (752)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L 126 (752)
.=|-|-+.|+... ..|..+|.+||.|+.... +....|-+|.|.+.-.|.+||. .||..|+|..+
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~------~~ngNwMhirYssr~~A~KALs-kng~ii~g~vm 261 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVT------PSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVM 261 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeec------CCCCceEEEEecchhHHHHhhh-hcCeeeccceE
Confidence 3344556666543 567789999999987643 2344799999999999999998 89999987653
No 139
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=89.89 E-value=0.38 Score=59.17 Aligned_cols=31 Identities=10% Similarity=0.163 Sum_probs=24.2
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhcCCeeEE
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSW 84 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ 84 (752)
..+++|-.+-..+..+.|+.+.+.||...++
T Consensus 72 ak~~~v~t~ka~~PpeHLrki~~~~sdm~s~ 102 (2365)
T COG5178 72 AKTLHVLTLKAPIPPEHLRKIQSPCSDMPSV 102 (2365)
T ss_pred hhheeeeccCCCCCHHHHHhhhCccccchhh
Confidence 5677777777788889999998888866554
No 140
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.19 E-value=0.16 Score=55.35 Aligned_cols=87 Identities=21% Similarity=0.279 Sum_probs=64.9
Q ss_pred CEEEEccCCCCCCHHHHH---HHHhhcCCeeEEEEeecCC--CC-CCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004460 55 TKVYVGKIAPTADSDFVL---SVLKVCGTVKSWKRAQYPS--NG-TPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (752)
Q Consensus 55 ~tVfVgNLp~~vte~~L~---~lFs~~G~I~~~ki~~d~~--tG-k~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (752)
.-+||-+|+..+....+. .+|++||.|..+.+..++. .+ .+.+-++|+|...+.|..||...+|+.++|+.|..
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 568899999887766443 5888999999998877652 11 12233999999999999999999999999998544
Q ss_pred EeecchHHHHHHHHH
Q 004460 129 KVDQATREYLERYVD 143 (752)
Q Consensus 129 ~~a~s~kk~le~~k~ 143 (752)
..++.+|-..|..
T Consensus 158 --~~gttkycs~~l~ 170 (327)
T KOG2068|consen 158 --SLGTTKYCSFYLR 170 (327)
T ss_pred --hhCCCcchhHHhh
Confidence 4455556555554
No 141
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=86.75 E-value=2.9 Score=40.83 Aligned_cols=74 Identities=16% Similarity=0.219 Sum_probs=56.0
Q ss_pred CCCCCEEEEccCCCCCCHH----HHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 004460 51 EKPQTKVYVGKIAPTADSD----FVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~----~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L 126 (752)
+++-.||.|.=|..++... .+...++.||+|.++...- +.-|.|.|.+..+|-.|+.+++. ..-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 4567788888776666543 5566678999999986532 34799999999999999999977 4557777
Q ss_pred EEEeec
Q 004460 127 MLKVDQ 132 (752)
Q Consensus 127 ~V~~a~ 132 (752)
.+.|-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 777754
No 142
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=86.32 E-value=2 Score=47.54 Aligned_cols=72 Identities=24% Similarity=0.166 Sum_probs=58.5
Q ss_pred ccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEeecchHH
Q 004460 60 GKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLKVDQATRE 136 (752)
Q Consensus 60 gNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~G--r~L~V~~a~s~kk 136 (752)
-|--+.+|.+.|..++..+|+|.++.|.+. +| --|.|+|++.+.|.+|-..|||..|-. -+|.|.|+..++-
T Consensus 128 lNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 128 LNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred ecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCccee
Confidence 344568889999999999999999988763 43 459999999999999999999998753 4677777776543
No 143
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=84.66 E-value=4.2 Score=34.24 Aligned_cols=55 Identities=15% Similarity=0.032 Sum_probs=44.0
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhc---CCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVC---GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 116 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~---G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~L 116 (752)
...|+|.++. .++.++|+.+|..| .....+.++-| .-|-|.|.+...|.+||..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD-------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD-------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC-------CcEEEEECCHHHHHHHHHcC
Confidence 4579999985 68889999999988 13557777777 36889999999999999754
No 144
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=84.15 E-value=3.6 Score=36.68 Aligned_cols=55 Identities=7% Similarity=0.068 Sum_probs=40.9
Q ss_pred CEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCC
Q 004460 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK 118 (752)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng 118 (752)
...||+ .|......+|..+|+.||.| .+..+.+ .-|||.....+.+..++..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCE-EEEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 345555 88889999999999999987 4455555 3799999999999999987753
No 145
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=83.12 E-value=2.7 Score=50.83 Aligned_cols=74 Identities=19% Similarity=0.166 Sum_probs=58.1
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEEee
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID--GQELMLKVD 131 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~--Gr~L~V~~a 131 (752)
..+.++.|.+-+.+...|..+|+.||.|.+....++ -..+.|.|.+.++|..|+.+|+|..+- |-+.+|.++
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 345556666678888899999999999988765554 258999999999999999999998654 667777665
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 372 k~ 373 (1007)
T KOG4574|consen 372 KT 373 (1007)
T ss_pred cc
Confidence 53
No 146
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=82.13 E-value=1 Score=45.37 Aligned_cols=82 Identities=13% Similarity=0.139 Sum_probs=51.1
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhh-cCCeeEEEEee---cCCCC--CCccEEEEEeCCHHHHHHHHHHhCCceeC---
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKV-CGTVKSWKRAQ---YPSNG--TPKGFGFCEFESAEGVLRALRLLNKFNID--- 122 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~-~G~I~~~ki~~---d~~tG--k~kGfgFVeF~~~esA~~Al~~Lng~~I~--- 122 (752)
...+.|.|.+||+++|++.+...++. +|....|..+. +..+. ....-|||.|.+.+.+...+..++|+.+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34678999999999999998887776 66664454332 11111 22466999999999999999999997664
Q ss_pred C--eEEEEEeecc
Q 004460 123 G--QELMLKVDQA 133 (752)
Q Consensus 123 G--r~L~V~~a~s 133 (752)
| ....|.++..
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 2 3456777766
No 147
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=80.32 E-value=1.1 Score=47.50 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=50.3
Q ss_pred HHHHHh-hcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeecc
Q 004460 71 VLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (752)
Q Consensus 71 L~~lFs-~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~s 133 (752)
|...|. +||.|..+.|..+ ..-...|-.+|.|...++|.+|+..||+-.+.|++|...+..-
T Consensus 85 ~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 85 VFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 334444 8999999877665 2335678899999999999999999999999999999877653
No 148
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=79.50 E-value=3.7 Score=47.69 Aligned_cols=79 Identities=18% Similarity=0.175 Sum_probs=55.4
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhh----------------------------cCCeeEEEEeecCCCCCCccEEEEEeCC
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKV----------------------------CGTVKSWKRAQYPSNGTPKGFGFCEFES 105 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~----------------------------~G~I~~~ki~~d~~tGk~kGfgFVeF~~ 105 (752)
-+++-|+||+..-+..+|..++.. .|.---+.++.|=.+....|||||.|.+
T Consensus 361 Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~s 440 (549)
T KOG4660|consen 361 RTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTS 440 (549)
T ss_pred hhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecC
Confidence 456777777766666666665542 2333334556665667788999999999
Q ss_pred HHHHHHHHHHhCCceeC----CeEEEEEeec
Q 004460 106 AEGVLRALRLLNKFNID----GQELMLKVDQ 132 (752)
Q Consensus 106 ~esA~~Al~~Lng~~I~----Gr~L~V~~a~ 132 (752)
++.+..+..++||+.+. .+.+.+.|+.
T Consensus 441 p~ai~~F~kAFnGk~W~~FnS~Kia~itYAr 471 (549)
T KOG4660|consen 441 PEAIIRFYKAFNGKKWEKFNSEKIASITYAR 471 (549)
T ss_pred HHHHHHHHHHHcCCchhhhcceeeeeeehhh
Confidence 99999999999999764 3445666664
No 149
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=78.59 E-value=5.2 Score=40.75 Aligned_cols=60 Identities=18% Similarity=0.130 Sum_probs=45.5
Q ss_pred HHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEEeecc
Q 004460 68 SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMLKVDQA 133 (752)
Q Consensus 68 e~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Ln--g~~I~Gr~L~V~~a~s 133 (752)
-..|+.+|..|+.+..|..... -+-..|.|.+.+.|..|...|+ +..++|..|.|.++..
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred HHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 3689999999999999877653 3568899999999999999999 9999999999987743
No 150
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=77.85 E-value=18 Score=33.85 Aligned_cols=66 Identities=11% Similarity=0.050 Sum_probs=47.0
Q ss_pred CEEEE-ccCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC
Q 004460 55 TKVYV-GKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (752)
Q Consensus 55 ~tVfV-gNLp~~vte~~L~~lFs~~G-~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~ 122 (752)
++|.| ...|..++.++|..+.+.+- .|..++|+++ ..-++....+.|.+...|......+||..++
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird--~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRD--GTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeC--CCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 44444 44555555566766555554 5667778776 2336778999999999999999999999765
No 151
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=77.20 E-value=3.4 Score=30.09 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHH
Q 004460 708 KASQMLELLQTILDDEAEMFVLKM 731 (752)
Q Consensus 708 ~p~~l~~~l~~~ld~~a~~fv~~l 731 (752)
.-..|++++..+|+.+|+.||...
T Consensus 4 ~~D~lLDeId~vLe~NAe~FV~~f 27 (33)
T TIGR03687 4 GVDDLLDEIDGVLESNAEEFVRGF 27 (33)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHH
Confidence 346799999999999999999864
No 152
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=76.93 E-value=1.8 Score=47.02 Aligned_cols=78 Identities=13% Similarity=0.096 Sum_probs=63.3
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
...+++|||++.+.+....+..++..+|.+..+.+........+++|+++.|...+.+..||.......+.+..+...
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~d 163 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKD 163 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCc
Confidence 457899999999999999999999999988887766655688999999999999999999998444345555554443
No 153
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=76.04 E-value=11 Score=32.30 Aligned_cols=67 Identities=12% Similarity=0.177 Sum_probs=38.6
Q ss_pred EEEEc-cCCCCCCHHHHHHHHhhcCC-----eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 56 KVYVG-KIAPTADSDFVLSVLKVCGT-----VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 56 tVfVg-NLp~~vte~~L~~lFs~~G~-----I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
++||. +--..++..+|..+|...+. |-.+.+.. .|.||+-... .+..++..|++..+.|++|.|.
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEE
Confidence 45552 33457778888888887654 44566644 3899988664 6788999999999999999987
Q ss_pred ee
Q 004460 130 VD 131 (752)
Q Consensus 130 ~a 131 (752)
.+
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 54
No 154
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=72.14 E-value=2.6 Score=47.97 Aligned_cols=72 Identities=7% Similarity=-0.008 Sum_probs=57.5
Q ss_pred CEEEEccCCCCCCH-HHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeecc
Q 004460 55 TKVYVGKIAPTADS-DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (752)
Q Consensus 55 ~tVfVgNLp~~vte-~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~s 133 (752)
+.+-+.-+++.++. ..|...|.+||.|..|.+-.. --.|.|+|.+..+|-.|.. .++..|+++.|.|.|-..
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 44555556666655 489999999999999977443 3579999999999977777 899999999999998764
No 155
>PF11517 Nab2: Nuclear abundant poly(A) RNA-bind protein 2 (Nab2); InterPro: IPR021083 Nab2 is a yeast heterogeneous nuclear ribonucleoprotein that modulates poly(A) tail length and mRNA. This is the N-terminal domain of the protein which mediates interactions with the C-terminal globular domain, Myosin-like protein 1 and the mRNA export factor, Gfd1 []. The N-terminal domain of Nab2 shows a structure of a helical fold. The N-terminal domain of Nab2 is thought to mediate protein:protein interactions that facilitate the nuclear export of mRNA []. An essential hydrophobic Phe73 patch on the N-terminal domain is thought to be an important component of the interface between Nab2 and Mlp1 [].; PDB: 3LCN_B 2V75_A 2JPS_A.
Probab=71.71 E-value=20 Score=32.85 Aligned_cols=74 Identities=14% Similarity=0.303 Sum_probs=55.8
Q ss_pred hhhhhhhhHHHHHHHhhCCchh--HHHHHHHHhhhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 004460 672 LHERMRPWISKKITEFLGEEET--TLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETG 745 (752)
Q Consensus 672 ~~~~~~pwi~kki~e~lG~ee~--~lvd~i~~~l~~~~~p~~l~~~l~~~ld~~a~~fv~~lWr~life~~~~~~g 745 (752)
+.+.||--|.+|...+=.+-|+ .+-+||+=.+...+++..++.+|...+|.=...++...-.-..|...+.+.|
T Consensus 8 ~~~nLK~iVaEkL~~l~NFnEDv~YVAEyIvlLisNggs~esivqELssLFD~vs~~~l~~VVQtaF~ale~Lq~G 83 (107)
T PF11517_consen 8 ITENLKVIVAEKLKTLPNFNEDVNYVAEYIVLLISNGGSVESIVQELSSLFDSVSTEALTDVVQTAFFALEALQQG 83 (107)
T ss_dssp HHHHHHHHHHHHHTTSTT--SSHHHHHHHHHHHHHTT--HHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccccCccccHHHHHHHhheeeeCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888899998888666555 4889999999999999999999999999777777777777777777777665
No 156
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=67.96 E-value=6.6 Score=41.71 Aligned_cols=73 Identities=12% Similarity=0.101 Sum_probs=50.2
Q ss_pred CCCCEEEEccCCCCCCHHH-H--HHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 004460 52 KPQTKVYVGKIAPTADSDF-V--LSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 125 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~-L--~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~ 125 (752)
+.....|++++-..+...- | ...|+.+-.+...+++.+ ..+...+++|+.|........+...-++..++...
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~-~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~ 169 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRD-RPQPIRPEAFESFKASDALLKAETEKEKKKIGKPP 169 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhc-CCCccCcccccCcchhhhhhhhccccccccccCcc
Confidence 3345667777766666554 3 677888888888788777 57888999999998776666665544554444443
No 157
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=66.59 E-value=1.2e+02 Score=36.52 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=7.1
Q ss_pred hhcHHHHHHHHHHHHHH
Q 004460 414 EEDLADEVREEEEIAVA 430 (752)
Q Consensus 414 e~D~~DR~rE~eE~~e~ 430 (752)
..|+..++.|.-|++++
T Consensus 348 k~deerkK~e~ke~ea~ 364 (811)
T KOG4364|consen 348 KSDEERKKLESKEVEAQ 364 (811)
T ss_pred hhhhhhhhhhhhHHHHH
Confidence 33444444444344333
No 158
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=64.50 E-value=9.8 Score=44.35 Aligned_cols=68 Identities=24% Similarity=0.300 Sum_probs=55.0
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHh--hcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC--CceeCCeEEE
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLK--VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELM 127 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs--~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Ln--g~~I~Gr~L~ 127 (752)
.-|.|.+.-||.++..+.++.||. .|-.+.+|.+..+ .-=||+|++..+|..|...|. -..|-|+.|.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-------~nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-------DNWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-------CceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 458899999999999999999997 5999999988776 246899999999999987663 2345566654
No 159
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=62.27 E-value=2.8e+02 Score=33.72 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=9.6
Q ss_pred HhhhhhhcHHHHHHHHHHHHHH
Q 004460 409 RIREKEEDLADEVREEEEIAVA 430 (752)
Q Consensus 409 r~rE~e~D~~DR~rE~eE~~e~ 430 (752)
|.+++|+-++-.++..++...+
T Consensus 335 R~k~~Erkee~~rk~deerkK~ 356 (811)
T KOG4364|consen 335 RAKIMERKEEKSRKSDEERKKL 356 (811)
T ss_pred HHHHHHHHHHHhhhhhhhhhhh
Confidence 3344444444444444444444
No 160
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=60.86 E-value=28 Score=39.88 Aligned_cols=69 Identities=7% Similarity=0.002 Sum_probs=57.8
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhc-CCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVC-GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~-G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~ 122 (752)
.+++.|+|-.+|-.++..+|..|+..| -.|..++++++. --++-..+|.|.+..+|......+||..|.
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 348899999999999999999998865 468889998852 234556899999999999999999999776
No 161
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=60.05 E-value=53 Score=35.59 Aligned_cols=50 Identities=16% Similarity=0.140 Sum_probs=36.5
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCe-eEEEEeecCCCCCCccEEEEEeCCHHH
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTV-KSWKRAQYPSNGTPKGFGFCEFESAEG 108 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I-~~~ki~~d~~tGk~kGfgFVeF~~~es 108 (752)
-.+-|||+|||.++.-.+|+.-+...|.+ .++.+ . .+.|-||+.|-+...
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw-k-----g~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW-K-----GHFGKCFLHFGNRKG 379 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEee-e-----cCCcceeEecCCccC
Confidence 35679999999999999999999887744 22222 1 244679999977543
No 162
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=59.80 E-value=17 Score=43.99 Aligned_cols=8 Identities=25% Similarity=0.152 Sum_probs=3.7
Q ss_pred HHHHHhhc
Q 004460 378 RKKEILYD 385 (752)
Q Consensus 378 r~ke~l~d 385 (752)
-+++|+.+
T Consensus 670 iL~~F~~n 677 (830)
T KOG1923|consen 670 ILSEFLDN 677 (830)
T ss_pred HHHHHHhc
Confidence 44455533
No 163
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=55.40 E-value=24 Score=40.88 Aligned_cols=10 Identities=40% Similarity=0.514 Sum_probs=4.5
Q ss_pred cccCChHHHh
Q 004460 538 PIDYSTEELQ 547 (752)
Q Consensus 538 Pi~y~~~~~~ 547 (752)
|-|-.+|-+.
T Consensus 753 ~~d~~DEImd 762 (817)
T KOG1925|consen 753 PSDTSDEIMD 762 (817)
T ss_pred CCChHHHHHH
Confidence 3344454444
No 164
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=55.35 E-value=5.4 Score=48.24 Aligned_cols=51 Identities=10% Similarity=0.140 Sum_probs=23.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeecchHHHHHHHHHHhhhh
Q 004460 94 TPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQATREYLERYVDKKTEN 148 (752)
Q Consensus 94 k~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~s~kk~le~~k~kkke~ 148 (752)
..--||||.-...- -+.+|..+|-...+. +.|. +..+...-.+|.+.+...
T Consensus 156 ~~DtygfVD~dvff-Qls~~~g~hp~vgD~--V~ve-a~Ynpsmpfkwnaqriq~ 206 (1194)
T KOG4246|consen 156 QTDTYGFVDQDVFF-QLSKMQGLHPSVGDA--VNVE-ADYNPSMPFKWNAQRIQH 206 (1194)
T ss_pred hccccccccHHHHH-HHHHHhcCCCccccc--eeee-cccCCCCCccccHHHHHh
Confidence 34467887532221 233444444333322 3332 333345556677665443
No 165
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.77 E-value=58 Score=38.53 Aligned_cols=79 Identities=13% Similarity=0.145 Sum_probs=57.8
Q ss_pred CCCCCEEEEccCCC-CCCHHHHHHHHhhc----CCeeEEEEeecC----------CCCC---------------------
Q 004460 51 EKPQTKVYVGKIAP-TADSDFVLSVLKVC----GTVKSWKRAQYP----------SNGT--------------------- 94 (752)
Q Consensus 51 ~~~~~tVfVgNLp~-~vte~~L~~lFs~~----G~I~~~ki~~d~----------~tGk--------------------- 94 (752)
......|-|.|+.+ .+...+|.-+|+.| |.|.+|.|+... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 44577899999998 45666898888865 689998765311 1122
Q ss_pred ----------------CccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEE
Q 004460 95 ----------------PKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLK 129 (752)
Q Consensus 95 ----------------~kGfgFVeF~~~esA~~Al~~Lng~~I~G--r~L~V~ 129 (752)
.+-||.|+|.+...|......++|+++.. ..|-+.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLR 303 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLR 303 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeee
Confidence 13578999999999999999999999874 344443
No 166
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=47.82 E-value=22 Score=42.47 Aligned_cols=64 Identities=14% Similarity=0.343 Sum_probs=52.5
Q ss_pred hhhhhhhHHHHHHHhhCCchhHHHHHHHHhhhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 004460 673 HERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLI 736 (752)
Q Consensus 673 ~~~~~pwi~kki~e~lG~ee~~lvd~i~~~l~~~~~p~~l~~~l~~~ld~~a~~fv~~lWr~li 736 (752)
..+++--+.....+|+|-.-+.+++.++..|........=+.+|.-||.++...||..||-.|-
T Consensus 21 ~~k~k~~~kddl~~~~g~~t~~~~~~~f~~~~r~~~~~~ea~e~~~~~ed~~~~~~a~~~~~~~ 84 (681)
T KOG3702|consen 21 VAKLKEMVKDDLKEYMGDYTDDILVEYFIVLLRNGRRKEEANELKIFLEDDSDSFVAWLWDHLA 84 (681)
T ss_pred hhhhhhhhhhhHHhhcCCchhhhhhHHHHHHHhccccccchhhhhhhhhhhhhhhhhhhhhhHH
Confidence 3688999999999999998776777777777655555555559999999999999999999886
No 167
>PF05639 Pup: Pup-like protein; InterPro: IPR008515 This family consists of several short bacterial proteins formely known as (DUF797). It was recently shown that Mycobacterium tuberculosis contains a small protein, Pup (Rv2111c), that is covalently conjugated to the e-NH2 groups of lysines on several target proteins (pupylation) such as the malonyl CoA acyl carrier protein (FabD) []. Pupylation of FabD was shown to result in its recruitment to the mycobacterial proteasome and subsequent degradation analogous to eukaryotic ubiquitin-conjugated proteins. Searches recovered Pup orthologs in all major actinobacteria lineages including the basal bifidobacteria and also sporadically in certain other bacterial lineages []. The Pup proteins were all between 50-90 residues in length and a multiple alignment shows that they all contain a conserved motif with a G [EQ] signature at the C terminus. Thus, all of them are suitable for conjugation via the terminal glutamate or the deamidated glutamine (as shown in the case of the Mycobacterium Pup []). The conserved globular core of Pup is predicted to form a bihelical unit with the extreme C-terminal 6-7 residues forming a tail in the extended conformation. Thus, Pup is structurally unrelated to the ubiquitin fold and has convergently evolved the function of protein modifier. ; PDB: 3M91_D 3M9D_I.
Probab=45.12 E-value=6.6 Score=33.71 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHhhhHHHHHHHHHH
Q 004460 707 VKASQMLELLQTILDDEAEMFVLKM 731 (752)
Q Consensus 707 ~~p~~l~~~l~~~ld~~a~~fv~~l 731 (752)
.+-..||++|..||..+|+.||..+
T Consensus 39 ~~vD~lLDeID~vLE~NAeeFVr~f 63 (69)
T PF05639_consen 39 DDVDDLLDEIDSVLETNAEEFVRSF 63 (69)
T ss_dssp CCHHHHHHHHTTTSSSC--------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999754
No 168
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=42.29 E-value=1.2e+02 Score=25.79 Aligned_cols=55 Identities=9% Similarity=0.039 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004460 65 TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (752)
Q Consensus 65 ~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (752)
.++-.+|+..|..|+ +..+. .+ .| | -||.|.+..+|.+|....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~--~d-~t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIR--DD-RT----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEE--ec-CC----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 456689999999997 33332 33 23 2 479999999999999999999888777654
No 169
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=42.21 E-value=38 Score=30.43 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=35.1
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeC
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFE 104 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~ 104 (752)
..-|||||++..+-+.-...+...++.-.-+-+..+ +. ..||+|.++-
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~--~n-eqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD--NN-EQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc--CC-CCCEEEEEeC
Confidence 345999999999998888888877765544444333 33 8899998874
No 170
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=40.93 E-value=22 Score=39.12 Aligned_cols=18 Identities=11% Similarity=0.379 Sum_probs=10.5
Q ss_pred HHHHHHHHhhcCCeeEEE
Q 004460 68 SDFVLSVLKVCGTVKSWK 85 (752)
Q Consensus 68 e~~L~~lFs~~G~I~~~k 85 (752)
.+.|-+||.++--|.-|.
T Consensus 83 hevideIyyqVkHvEPWe 100 (453)
T KOG2888|consen 83 HEVIDEIYYQVKHVEPWE 100 (453)
T ss_pred HHHHHHHHHHHhccCchh
Confidence 445666776665555553
No 171
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=35.88 E-value=39 Score=38.96 Aligned_cols=63 Identities=19% Similarity=0.399 Sum_probs=45.1
Q ss_pred hhhhhhHHHHHHHhhCCchhHHHHHHHHhhhcCC----CHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 004460 674 ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHV----KASQMLELLQTILDDEAEMFVLKMWRMLI 736 (752)
Q Consensus 674 ~~~~pwi~kki~e~lG~ee~~lvd~i~~~l~~~~----~p~~l~~~l~~~ld~~a~~fv~~lWr~li 736 (752)
+.|+-|...-..=+--..-..|-.||+-.|+.-. =+..++.+|..||-+++..||.||...|-
T Consensus 7 d~Lk~wlsd~lePi~Dadpsala~yvlal~kkdkse~elk~~~~~ql~vfl~~et~pfv~K~fda~~ 73 (526)
T KOG2135|consen 7 DALKDWLSDALEPICDADPSALAKYVLALLKKDKSEKELKALCIEQLDVFLRQETIPFVDKLFDALR 73 (526)
T ss_pred HHHHHHHhhhccCcccCChHHHHHHHHHHhhcCCCchhhhhhhHHhcchhhhcccchHHHHHHHhhc
Confidence 4566666554333333333458899999998644 35667799999999999999999987654
No 172
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=34.94 E-value=81 Score=36.75 Aligned_cols=13 Identities=8% Similarity=0.184 Sum_probs=9.0
Q ss_pred CCCHHHHHHHHhh
Q 004460 65 TADSDFVLSVLKV 77 (752)
Q Consensus 65 ~vte~~L~~lFs~ 77 (752)
.++..-|..+|..
T Consensus 317 ~~D~~r~~~LFEs 329 (817)
T KOG1925|consen 317 SVDTARLEHLFES 329 (817)
T ss_pred eecHHHHHHHHHH
Confidence 4556678888863
No 173
>PF11671 Apis_Csd: Complementary sex determiner protein; InterPro: IPR021007 Sex determination proteins are found in eukaryotes. Proteins in this family are typically between 168 and 410 amino acids in length. It plays a role in the gender determination of around 20% of all animals. In the honeybee, the mechanism of sex determination depends on the complementary sex determiner (csd) gene which produces an SR-type protein. Males are homozygous while females are homozygous for the csd gene. Heterozygosity generates an active protein which initiates female development []. This entry represents the C-terminal end of the sex determination protein.
Probab=34.90 E-value=26 Score=33.67 Aligned_cols=9 Identities=56% Similarity=1.055 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 004460 368 KEKEKERER 376 (752)
Q Consensus 368 kerere~er 376 (752)
+||||.+|+
T Consensus 38 rEReRsRE~ 46 (146)
T PF11671_consen 38 RERERSRER 46 (146)
T ss_pred hhhhhhccc
Confidence 344444443
No 174
>PF13797 Post_transc_reg: Post-transcriptional regulator
Probab=34.13 E-value=1e+02 Score=27.75 Aligned_cols=58 Identities=26% Similarity=0.414 Sum_probs=47.3
Q ss_pred hhhhhhhhHHHHHHHh--hCC---chhHHHHHHHHhhhcCCCHHHHHHHHHHhhhHHHHHHHH
Q 004460 672 LHERMRPWISKKITEF--LGE---EETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVL 729 (752)
Q Consensus 672 ~~~~~~pwi~kki~e~--lG~---ee~~lvd~i~~~l~~~~~p~~l~~~l~~~ld~~a~~fv~ 729 (752)
..+.|+|||..|+.|+ ||. ..+.|=+|+++..-++..|..|-+-+..||-=.+-.||.
T Consensus 5 ~~~~v~p~l~sK~eEf~~lGY~~vt~~dlw~yl~~~~WK~~~~~~l~e~V~DIlsl~~~~~m~ 67 (87)
T PF13797_consen 5 WREQVEPALQSKAEEFHLLGYESVTEEDLWSYLTEKKWKKKKPPRLHELVNDILSLKPNDYMN 67 (87)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHhccCCCcCHHHHHHHHHcCCHHHHHH
Confidence 3567999999999986 564 477899999999988888888888888888777777764
No 175
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.68 E-value=40 Score=36.24 Aligned_cols=56 Identities=21% Similarity=0.458 Sum_probs=43.9
Q ss_pred HHHHHHHhhCCchhHHHHHHHHhhhcCCCHHHHHHHHHHh-hhHH--HHHHHHHHHHHH
Q 004460 680 ISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTI-LDDE--AEMFVLKMWRML 735 (752)
Q Consensus 680 i~kki~e~lG~ee~~lvd~i~~~l~~~~~p~~l~~~l~~~-ld~~--a~~fv~~lWr~l 735 (752)
|+....-|||+.|+.|..-|++.-++..+|.++.+.|... |.+= ...||..||-.+
T Consensus 264 indllesymGirD~eLA~~i~e~~~~~~n~~efaeaideseL~~F~FpDefVfdvWg~I 322 (334)
T KOG3938|consen 264 INDLLESYMGIRDTELASTIWETGKDKENPDEFAEAIDESELGDFAFPDEFVFDVWGAI 322 (334)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHhccccCCHHHHHHHhhhcccccccCCcceeeehhhhh
Confidence 4555667999999999999999999999998888777666 4422 467999999654
No 176
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=32.42 E-value=7.7 Score=45.16 Aligned_cols=70 Identities=11% Similarity=0.095 Sum_probs=55.2
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~ 122 (752)
..|+|||.||+++++-..|..+|..+-.+..+.+..+........+++|+|.---...-|+-+||+..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 3588999999999999999999998877777666444334456778999998877777788888887544
No 177
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=31.66 E-value=11 Score=39.29 Aligned_cols=76 Identities=16% Similarity=0.349 Sum_probs=62.7
Q ss_pred CCCCEEEEcc----CCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004460 52 KPQTKVYVGK----IAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (752)
Q Consensus 52 ~~~~tVfVgN----Lp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~ 127 (752)
.-..+++.|+ |...++...+...|+..|++..+.+.++ .+|.+..|+|+.|.-..+.-.++..+.++.+--+++.
T Consensus 78 e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~-~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~ 156 (267)
T KOG4454|consen 78 EEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTD-NDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVT 156 (267)
T ss_pred hhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccc-ccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCcc
Confidence 3457888998 8888999999999999999999998887 4689999999999988888888887777665554444
Q ss_pred E
Q 004460 128 L 128 (752)
Q Consensus 128 V 128 (752)
+
T Consensus 157 ~ 157 (267)
T KOG4454|consen 157 I 157 (267)
T ss_pred c
Confidence 4
No 178
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=30.79 E-value=96 Score=27.53 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=38.2
Q ss_pred HHHHHHhhCCchhHHHHHHHHhhhcC---CCHHHHHHHHHHhhhHHHHHHH
Q 004460 681 SKKITEFLGEEETTLVDYIVSSTQDH---VKASQMLELLQTILDDEAEMFV 728 (752)
Q Consensus 681 ~kki~e~lG~ee~~lvd~i~~~l~~~---~~p~~l~~~l~~~ld~~a~~fv 728 (752)
..||..+|| .|++.-++++..|+.. .+-..|+..|.++|..++..=+
T Consensus 9 ~~Kvd~iL~-~dp~~Ke~l~~aLk~Ya~~k~vd~l~~aL~~~L~~e~~~~L 58 (80)
T cd07354 9 SRKVDAILG-DDPVKKEQVFAALKQYAADKNVDCLVWALCGLLQTEAHKKL 58 (80)
T ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhCcHHHHHH
Confidence 578999999 5888999999999753 3677899999999997776433
No 179
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=29.59 E-value=1.5e+02 Score=24.99 Aligned_cols=51 Identities=12% Similarity=0.319 Sum_probs=40.7
Q ss_pred hhHHHHHHHhhCCchhHHHHHHHHhhhcCCCHHHHHHH-HHHhhhHHHHHHHHHHHH
Q 004460 678 PWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLEL-LQTILDDEAEMFVLKMWR 733 (752)
Q Consensus 678 pwi~kki~e~lG~ee~~lvd~i~~~l~~~~~p~~l~~~-l~~~ld~~a~~fv~~lWr 733 (752)
+++..-+.-++....+.+..++-..+....+|..++.+ |.++|.+ |..+|.
T Consensus 3 ~~~~~l~~al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~-----iG~~w~ 54 (79)
T PF02607_consen 3 ELIERLLDALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEE-----IGELWE 54 (79)
T ss_dssp HHHHHHHHHHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-----HHHHHh
Confidence 56777777788888888999999999887899999987 8888876 666775
No 180
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=29.14 E-value=1e+02 Score=35.94 Aligned_cols=7 Identities=14% Similarity=0.562 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 004460 108 GVLRALR 114 (752)
Q Consensus 108 sA~~Al~ 114 (752)
.++.-|+
T Consensus 497 ~LmaqIR 503 (569)
T KOG3671|consen 497 ALMAQIR 503 (569)
T ss_pred HHHHHHH
Confidence 3334444
No 181
>PF15473 PCNP: PEST, proteolytic signal-containing nuclear protein family
Probab=28.38 E-value=22 Score=34.94 Aligned_cols=19 Identities=32% Similarity=0.697 Sum_probs=14.5
Q ss_pred CccccCccCCCCCCcchhh
Q 004460 511 KRTAVPSVFHVEDDDDADK 529 (752)
Q Consensus 511 kr~~v~~vf~~~ddee~~~ 529 (752)
+.++|++|||.+||+|..+
T Consensus 88 ~~~~va~~Fn~d~d~e~eE 106 (150)
T PF15473_consen 88 KKLSVAAVFNEDDDSEPEE 106 (150)
T ss_pred CcchhhhhhccccccChhh
Confidence 4678999999987776443
No 182
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=28.15 E-value=2.3e+02 Score=33.32 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=16.8
Q ss_pred EEEEccCCCCCCHHHHHHHHhhcCCeeEE
Q 004460 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSW 84 (752)
Q Consensus 56 tVfVgNLp~~vte~~L~~lFs~~G~I~~~ 84 (752)
.|-+..|+..-....|..-..+-|.+..+
T Consensus 483 ~ve~t~~~~~dgR~~LmaqIRqG~~Lk~v 511 (569)
T KOG3671|consen 483 KVETTALSSGDGRDALMAQIRQGGQLKKV 511 (569)
T ss_pred ceeeccCcCcccHHHHHHHHHhccccccc
Confidence 55566677555555666555555555544
No 183
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=26.91 E-value=82 Score=28.99 Aligned_cols=50 Identities=22% Similarity=0.264 Sum_probs=34.6
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCH
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESA 106 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~ 106 (752)
..-||||+++..+-+.-...+...||.- ++.+++. +..-.||+|.++-..
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G-~avmv~~--~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEG-NVVMAWA--TNTESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCC-cEEEEEc--CCCCCCcEEEecCCC
Confidence 3459999999999888777777777653 3333332 234459999987653
No 184
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.87 E-value=2.1e+02 Score=30.63 Aligned_cols=8 Identities=63% Similarity=0.630 Sum_probs=5.0
Q ss_pred ChHHHhhc
Q 004460 542 STEELQAA 549 (752)
Q Consensus 542 ~~~~~~~~ 549 (752)
+.+++.||
T Consensus 258 S~eEl~AV 265 (299)
T KOG3054|consen 258 SMEELAAV 265 (299)
T ss_pred cHHHHHHH
Confidence 67776554
No 185
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=24.75 E-value=85 Score=31.42 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=45.3
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHH
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALR 114 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~ 114 (752)
......+++++++..++...+..+|..+|.+....+...........+.|+.+.....+..++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 4457889999999999999999999999999777665553333355555555544444444443
No 186
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.37 E-value=1.4e+02 Score=34.08 Aligned_cols=55 Identities=13% Similarity=0.086 Sum_probs=44.6
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhcCC-eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 115 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~G~-I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~ 115 (752)
.+.|-|.+.|...-..+|..+|+.||. --.|+++-+ ..+|..|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 356778889988888899999999874 345666666 4899999999999999984
No 187
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=22.57 E-value=72 Score=32.58 Aligned_cols=73 Identities=15% Similarity=0.125 Sum_probs=49.9
Q ss_pred CCEEEEccCCCCCCHH-----HHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCe-EEE
Q 004460 54 QTKVYVGKIAPTADSD-----FVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-ELM 127 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~-----~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr-~L~ 127 (752)
.+++++.+|+..+..+ ....+|.+|-......+.+ +.++--|.|.++..+..|.-.+++..|.|+ .|.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 4568888888876654 2344555544433333322 235566899999999999999999999988 666
Q ss_pred EEeec
Q 004460 128 LKVDQ 132 (752)
Q Consensus 128 V~~a~ 132 (752)
.-+++
T Consensus 84 ~yfaQ 88 (193)
T KOG4019|consen 84 LYFAQ 88 (193)
T ss_pred EEEcc
Confidence 66555
No 188
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=22.44 E-value=3.1e+02 Score=24.90 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=26.6
Q ss_pred HHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHhhhhcccc
Q 004460 711 QMLELLQTILDDE--AEMFVLKMWRMLIFEIKKVETGLAL 748 (752)
Q Consensus 711 ~l~~~l~~~ld~~--a~~fv~~lWr~life~~~~~~gl~~ 748 (752)
+++..+.....+. -..|+..||+++|=|+.+.+..+..
T Consensus 52 ~vl~~~~~~a~~~gl~p~~~e~i~~~i~~esir~q~~~~~ 91 (94)
T TIGR01795 52 YQIARLRRLAIDAGLDPEFAEKFLNFIVTEVIKHHERIAD 91 (94)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444443332 4679999999999999998887654
No 189
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=21.87 E-value=83 Score=40.17 Aligned_cols=18 Identities=44% Similarity=0.953 Sum_probs=13.9
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 004460 2 VRPAFPPRPPGPVGVLPS 19 (752)
Q Consensus 2 ~~P~~PP~pP~p~g~~P~ 19 (752)
++||+||+||+|||.-|+
T Consensus 4 lppg~ppppppppg~epp 21 (2365)
T COG5178 4 LPPGNPPPPPPPPGFEPP 21 (2365)
T ss_pred CCCCCCcccccCCCCCCC
Confidence 478999888888886554
No 190
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=20.66 E-value=3.1e+02 Score=24.25 Aligned_cols=60 Identities=18% Similarity=0.281 Sum_probs=44.0
Q ss_pred hhhHHHHHHHhhCCchhHHHHHHHHhhhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 004460 677 RPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLI 736 (752)
Q Consensus 677 ~pwi~kki~e~lG~ee~~lvd~i~~~l~~~~~p~~l~~~l~~~ld~~a~~fv~~lWr~li 736 (752)
.+=+..++..+|-..|-.-+-+.++.-..+.+-..|+-.|..+||.-|.--+...=|.||
T Consensus 5 ~r~f~~q~~~LL~~~Er~~~~~~L~~Y~~~~~Vd~LV~~L~~vLdtPaK~~Ll~~iR~lI 64 (78)
T cd07347 5 AREFSQQVDHLLTDAEREQVTRALERYHQERNVDDLVRDLYLVLDTPAKLPLLQFLRQVI 64 (78)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCcHhHHHHHHHHHHHc
Confidence 455677888889666655555555555666699999999999999999865555555555
No 191
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=20.40 E-value=8.8e+02 Score=26.48 Aligned_cols=75 Identities=29% Similarity=0.423 Sum_probs=0.0
Q ss_pred hhHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004460 305 KERDLKREKEREIDR-YEREAERERVRKEREQRRKIEEAEREYERCLKDWEYREREREKERQYEKEKEKERERKRKKE 381 (752)
Q Consensus 305 r~re~~r~~ere~~r-~~r~rerer~r~~r~~~~k~re~E~~y~er~r~we~RER~r~~~re~ekerere~er~r~ke 381 (752)
..|..+|..-+++++ .+.+..|+..-++|........+|.+-++|.+..+.-=+-. ..+.||-+.||..|++..+
T Consensus 324 kkrqlerqekqeleqmaeeekkr~eeaeerqraeekeq~eaee~~ra~kr~egvkll--kf~fekieareerrkqkee 399 (445)
T KOG2891|consen 324 KKRQLERQEKQELEQMAEEEKKREEEAEERQRAEEKEQKEAEELERARKREEGVKLL--KFEFEKIEAREERRKQKEE 399 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHhhhHH
Done!