Query 004460
Match_columns 752
No_of_seqs 415 out of 1631
Neff 6.0
Searched_HMMs 29240
Date Tue Mar 26 01:49:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004460.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004460hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v53_A RNA-binding protein 25; 100.0 6.7E-38 2.3E-42 287.3 10.5 107 641-747 12-118 (119)
2 1mp1_A Ser/Arg-related nuclear 99.9 1.1E-22 3.9E-27 185.0 8.3 91 652-747 5-97 (111)
3 1x4q_A U4/U6 small nuclear rib 99.8 2.9E-20 1E-24 164.6 7.4 74 667-740 8-82 (92)
4 3pgw_S U1-70K; protein-RNA com 99.7 1.2E-17 4.1E-22 187.1 15.1 82 52-133 100-181 (437)
5 4fxv_A ELAV-like protein 1; RN 99.7 1E-16 3.5E-21 143.6 11.6 82 52-133 17-98 (99)
6 3n9u_C Cleavage and polyadenyl 99.7 4E-16 1.4E-20 151.2 13.1 83 52-134 53-137 (156)
7 3s8s_A Histone-lysine N-methyl 99.7 7.1E-16 2.4E-20 140.9 13.4 85 52-136 4-88 (110)
8 2khc_A Testis-specific RNP-typ 99.6 1.4E-15 4.8E-20 139.2 14.1 82 50-131 36-117 (118)
9 1u6f_A Tcubp1, RNA-binding pro 99.6 3.4E-15 1.1E-19 140.5 15.2 84 50-133 38-121 (139)
10 3ns6_A Eukaryotic translation 99.6 6.3E-16 2.2E-20 138.2 7.7 86 53-138 5-97 (100)
11 2cq4_A RNA binding motif prote 99.6 1.5E-15 5.2E-20 138.2 10.4 82 51-133 22-103 (114)
12 2la6_A RNA-binding protein FUS 99.6 3.1E-15 1.1E-19 132.8 11.6 79 53-131 12-98 (99)
13 2e5h_A Zinc finger CCHC-type a 99.6 4.8E-15 1.6E-19 129.8 12.6 81 52-132 14-94 (94)
14 2lxi_A RNA-binding protein 10; 99.6 2.4E-16 8.2E-21 138.8 3.9 81 54-134 1-83 (91)
15 3mdf_A Peptidyl-prolyl CIS-tra 99.6 3.4E-15 1.1E-19 128.2 11.0 81 52-132 5-85 (85)
16 3bs9_A Nucleolysin TIA-1 isofo 99.6 3.8E-15 1.3E-19 128.5 11.3 81 53-133 5-85 (87)
17 3md1_A Nuclear and cytoplasmic 99.6 4.3E-15 1.5E-19 127.0 11.1 80 54-133 1-80 (83)
18 2lkz_A RNA-binding protein 5; 99.6 2E-15 6.9E-20 134.6 9.0 83 51-133 6-94 (95)
19 2x1f_A MRNA 3'-END-processing 99.6 5.1E-15 1.8E-19 130.6 11.4 83 53-135 1-83 (96)
20 2cpz_A CUG triplet repeat RNA- 99.6 8.8E-15 3E-19 133.4 13.2 82 52-133 23-104 (115)
21 2cqc_A Arginine/serine-rich sp 99.6 7.2E-15 2.5E-19 128.8 11.9 82 52-133 13-94 (95)
22 1x5u_A Splicing factor 3B subu 99.6 6.1E-15 2.1E-19 131.9 11.6 82 52-133 13-94 (105)
23 2dgs_A DAZ-associated protein 99.6 6.9E-15 2.4E-19 130.4 11.5 82 51-133 7-88 (99)
24 1p27_B RNA-binding protein 8A; 99.6 5.4E-15 1.8E-19 132.6 10.6 82 52-133 21-102 (106)
25 2dnz_A Probable RNA-binding pr 99.6 6.9E-15 2.4E-19 129.1 11.0 82 52-133 3-84 (95)
26 1oo0_B CG8781-PA, drosophila Y 99.6 6.6E-15 2.2E-19 133.0 11.1 83 51-133 23-105 (110)
27 2dnm_A SRP46 splicing factor; 99.6 4.6E-15 1.6E-19 132.5 9.8 83 51-133 10-92 (103)
28 1whw_A Hypothetical protein ri 99.6 1E-14 3.4E-19 129.2 11.8 83 51-133 5-87 (99)
29 2do4_A Squamous cell carcinoma 99.6 1.5E-14 5.1E-19 128.4 12.8 81 52-133 15-95 (100)
30 3s7r_A Heterogeneous nuclear r 99.6 1.1E-14 3.9E-19 125.8 11.4 80 51-131 8-87 (87)
31 2jrs_A RNA-binding protein 39; 99.6 7.2E-15 2.5E-19 133.4 10.6 83 51-133 23-105 (108)
32 3p5t_L Cleavage and polyadenyl 99.6 1.9E-15 6.5E-20 132.1 6.5 80 55-134 2-83 (90)
33 2dgo_A Cytotoxic granule-assoc 99.6 1.6E-14 5.3E-19 131.6 12.8 83 51-133 12-94 (115)
34 2cq0_A Eukaryotic translation 99.6 9.9E-15 3.4E-19 130.3 11.1 83 51-133 12-94 (103)
35 2ywk_A Putative RNA-binding pr 99.6 7.8E-15 2.7E-19 128.7 10.3 81 52-133 14-94 (95)
36 4f25_A Polyadenylate-binding p 99.6 7.5E-15 2.6E-19 134.5 10.6 78 54-133 5-82 (115)
37 1x5t_A Splicing factor 3B subu 99.6 7E-15 2.4E-19 129.3 10.0 82 52-133 3-85 (96)
38 1x4h_A RNA-binding protein 28; 99.6 1.2E-14 4.2E-19 131.1 11.7 82 52-133 13-100 (111)
39 3ulh_A THO complex subunit 4; 99.6 1.3E-14 4.5E-19 130.2 11.8 80 52-132 27-106 (107)
40 2cqb_A Peptidyl-prolyl CIS-tra 99.6 9.1E-15 3.1E-19 130.1 10.4 82 52-133 10-91 (102)
41 2cph_A RNA binding motif prote 99.6 1.4E-14 4.9E-19 129.8 11.5 83 51-133 12-96 (107)
42 2dgp_A Bruno-like 4, RNA bindi 99.6 1.1E-14 3.6E-19 130.6 10.5 83 51-133 10-95 (106)
43 1x5s_A Cold-inducible RNA-bind 99.6 1.3E-14 4.4E-19 129.2 11.0 82 52-133 10-91 (102)
44 2cpe_A RNA-binding protein EWS 99.6 1.5E-14 5.1E-19 131.3 11.2 83 51-133 12-102 (113)
45 2j76_E EIF-4B, EIF4B, eukaryot 99.6 3E-15 1E-19 133.5 6.4 80 52-133 17-97 (100)
46 3ex7_B RNA-binding protein 8A; 99.5 1.2E-14 4.1E-19 134.4 10.3 82 52-133 20-101 (126)
47 2div_A TRNA selenocysteine ass 99.5 1.5E-14 5E-19 128.1 10.1 82 52-133 7-93 (99)
48 2rs2_A Musashi-1, RNA-binding 99.5 1.4E-14 4.8E-19 131.6 10.2 83 50-133 21-103 (109)
49 2dnh_A Bruno-like 5, RNA bindi 99.5 2.5E-14 8.7E-19 127.9 11.7 81 52-133 13-96 (105)
50 2cpf_A RNA binding motif prote 99.5 1.3E-14 4.5E-19 128.1 9.6 82 52-133 3-87 (98)
51 2cqi_A Nucleolysin TIAR; RNA r 99.5 5E-14 1.7E-18 125.7 13.3 81 51-133 12-92 (103)
52 3ucg_A Polyadenylate-binding p 99.5 2E-14 6.9E-19 124.4 10.4 79 54-133 6-84 (89)
53 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 4E-14 1.4E-18 132.6 13.2 81 51-131 60-140 (140)
54 2kt5_A RNA and export factor-b 99.5 1.1E-13 3.7E-18 128.0 15.8 82 51-133 32-113 (124)
55 4a8x_A RNA-binding protein wit 99.5 1.8E-14 6.3E-19 124.2 10.0 81 53-133 3-84 (88)
56 1s79_A Lupus LA protein; RRM, 99.5 1.2E-14 4.2E-19 131.2 8.8 80 52-133 9-88 (103)
57 1p1t_A Cleavage stimulation fa 99.5 6.2E-15 2.1E-19 131.5 6.8 83 52-134 6-88 (104)
58 2dng_A Eukaryotic translation 99.5 3.5E-14 1.2E-18 126.9 11.7 80 52-133 13-92 (103)
59 1rk8_A CG8781-PA, CG8781-PA pr 99.5 2.6E-14 9E-19 138.9 11.8 83 51-133 69-151 (165)
60 2nlw_A Eukaryotic translation 99.5 9.3E-15 3.2E-19 131.6 8.0 82 52-135 13-101 (105)
61 2kxn_B Transformer-2 protein h 99.5 1.3E-14 4.4E-19 136.1 9.2 83 51-133 43-125 (129)
62 2fy1_A RNA-binding motif prote 99.5 2.5E-14 8.5E-19 131.5 10.9 81 52-133 5-85 (116)
63 2err_A Ataxin-2-binding protei 99.5 2.1E-14 7E-19 130.3 10.2 81 51-133 26-106 (109)
64 2cqd_A RNA-binding region cont 99.5 4.3E-14 1.5E-18 129.0 12.4 83 50-133 13-95 (116)
65 2m2b_A RNA-binding protein 10; 99.5 9E-15 3.1E-19 136.9 7.6 81 52-133 21-107 (131)
66 1wi8_A EIF-4B, eukaryotic tran 99.5 3.5E-14 1.2E-18 127.1 11.1 79 53-133 14-93 (104)
67 1x4b_A Heterogeneous nuclear r 99.5 2.2E-14 7.7E-19 130.9 9.9 81 52-133 25-105 (116)
68 2jwn_A Embryonic polyadenylate 99.5 1.5E-14 5.3E-19 133.3 8.8 80 53-133 35-114 (124)
69 2d9p_A Polyadenylate-binding p 99.5 3.4E-14 1.2E-18 126.8 10.7 81 51-133 12-92 (103)
70 2dh8_A DAZ-associated protein 99.5 2.5E-14 8.7E-19 128.1 9.8 83 50-133 12-94 (105)
71 2cqp_A RNA-binding protein 12; 99.5 2.1E-14 7.1E-19 126.9 9.1 81 52-132 13-93 (98)
72 2dgv_A HnRNP M, heterogeneous 99.5 3.2E-14 1.1E-18 124.0 10.1 80 52-133 6-85 (92)
73 1x4e_A RNA binding motif, sing 99.5 5.9E-15 2E-19 127.0 5.2 81 52-132 3-83 (85)
74 2dhg_A TRNA selenocysteine ass 99.5 2E-14 6.9E-19 128.4 8.9 81 52-133 7-89 (104)
75 2cq3_A RNA-binding protein 9; 99.5 9.7E-14 3.3E-18 123.8 13.2 81 51-133 12-92 (103)
76 2mss_A Protein (musashi1); RNA 99.5 1.4E-14 4.7E-19 121.8 7.2 75 56-131 1-75 (75)
77 2do0_A HnRNP M, heterogeneous 99.5 6.2E-14 2.1E-18 127.2 12.0 81 52-133 13-93 (114)
78 2cqg_A TDP-43, TAR DNA-binding 99.5 9.1E-14 3.1E-18 124.0 12.7 81 51-133 12-92 (103)
79 2ek1_A RNA-binding protein 12; 99.5 1.7E-14 5.7E-19 126.6 7.5 81 53-133 14-94 (95)
80 2dgw_A Probable RNA-binding pr 99.5 8.1E-14 2.8E-18 121.6 11.9 80 51-133 7-86 (91)
81 2kn4_A Immunoglobulin G-bindin 99.5 6.8E-14 2.3E-18 134.2 12.4 82 52-133 68-149 (158)
82 2dgx_A KIAA0430 protein; RRM d 99.5 7.1E-14 2.4E-18 123.7 11.4 78 53-133 8-89 (96)
83 1uaw_A Mouse-musashi-1; RNP-ty 99.5 1.4E-14 4.6E-19 122.1 6.3 76 55-131 1-76 (77)
84 2a3j_A U1 small nuclear ribonu 99.5 4.9E-14 1.7E-18 132.2 10.7 84 52-138 27-114 (127)
85 1h2v_Z 20 kDa nuclear CAP bind 99.5 7.3E-14 2.5E-18 134.2 12.1 82 52-133 37-118 (156)
86 1wel_A RNA-binding protein 12; 99.5 4.6E-14 1.6E-18 130.7 9.8 81 52-133 23-103 (124)
87 2db1_A Heterogeneous nuclear r 99.5 5.9E-14 2E-18 129.3 10.3 81 51-133 14-97 (118)
88 1x4a_A Splicing factor, argini 99.5 2.2E-13 7.6E-18 122.9 13.8 79 52-133 20-98 (109)
89 1x5o_A RNA binding motif, sing 99.5 1.6E-13 5.5E-18 124.6 12.7 82 51-133 22-111 (114)
90 2cpy_A RNA-binding protein 12; 99.5 6.4E-14 2.2E-18 128.0 10.1 80 52-133 13-93 (114)
91 2ki2_A SS-DNA binding protein 99.5 1.3E-14 4.3E-19 126.3 4.9 79 55-134 2-80 (90)
92 2dis_A Unnamed protein product 99.5 6.2E-14 2.1E-18 126.2 9.4 81 53-133 7-91 (109)
93 3q2s_C Cleavage and polyadenyl 99.5 3.6E-14 1.2E-18 145.8 8.8 82 53-134 67-150 (229)
94 1fj7_A Nucleolin RBD1, protein 99.5 1.3E-14 4.4E-19 129.1 4.8 80 52-133 15-94 (101)
95 1nu4_A U1A RNA binding domain; 99.5 3.4E-14 1.2E-18 125.1 7.5 83 51-136 5-91 (97)
96 3pgw_A U1-A; protein-RNA compl 99.5 3.8E-13 1.3E-17 140.3 16.2 78 50-132 203-281 (282)
97 2krb_A Eukaryotic translation 99.5 3.2E-14 1.1E-18 121.7 6.4 73 54-128 1-80 (81)
98 3lqv_A PRE-mRNA branch site pr 99.5 1.4E-13 4.7E-18 125.2 10.9 80 53-135 7-86 (115)
99 2cpx_A Hypothetical protein FL 99.5 5.3E-14 1.8E-18 127.9 7.9 82 52-133 23-104 (115)
100 2f3j_A RNA and export factor b 99.5 2.8E-13 9.7E-18 133.8 13.6 84 50-134 84-167 (177)
101 2wbr_A GW182, gawky, LD47780P; 99.5 1.9E-13 6.6E-18 120.1 10.9 73 53-131 6-78 (89)
102 2la4_A Nuclear and cytoplasmic 99.5 3.7E-14 1.3E-18 126.1 6.5 75 53-133 26-100 (101)
103 2j8a_A Histone-lysine N-methyl 99.5 1.2E-13 4.2E-18 129.3 10.2 89 55-143 3-107 (136)
104 1iqt_A AUF1, heterogeneous nuc 99.5 3.6E-14 1.2E-18 119.0 5.8 75 56-131 1-75 (75)
105 2xnq_A Nuclear polyadenylated 99.5 2.5E-13 8.5E-18 120.7 11.2 74 52-133 20-94 (97)
106 2lea_A Serine/arginine-rich sp 99.5 5.1E-14 1.7E-18 133.0 7.0 83 51-133 44-126 (135)
107 1wg5_A Heterogeneous nuclear r 99.5 1.6E-13 5.6E-18 123.2 10.0 79 52-132 13-92 (104)
108 2cpi_A CCR4-NOT transcription 99.5 9.8E-14 3.4E-18 126.1 8.5 81 53-133 14-100 (111)
109 1sjq_A Polypyrimidine tract-bi 99.5 1.4E-13 4.7E-18 125.2 9.3 77 51-133 13-91 (105)
110 4f02_A Polyadenylate-binding p 99.5 2.6E-13 9E-18 136.7 12.1 82 53-134 14-95 (213)
111 2jvo_A Nucleolar protein 3; nu 99.5 1.8E-13 6E-18 124.3 9.8 76 51-134 28-103 (108)
112 2fc9_A NCL protein; structure 99.4 3.1E-13 1.1E-17 120.1 10.9 79 51-133 12-90 (101)
113 1x4c_A Splicing factor, argini 99.4 5.3E-13 1.8E-17 120.6 12.4 74 53-133 14-92 (108)
114 2cq1_A PTB-like protein L; RRM 99.4 4.6E-13 1.6E-17 120.6 11.6 77 51-133 12-90 (101)
115 2lmi_A GRSF-1, G-rich sequence 99.4 8.2E-14 2.8E-18 125.8 6.6 81 51-133 8-91 (107)
116 2fc8_A NCL protein; structure 99.4 3.7E-13 1.3E-17 119.7 10.5 79 52-133 13-91 (102)
117 2hgl_A HNRPF protein, heteroge 99.4 2.2E-13 7.4E-18 129.3 9.1 80 51-132 41-123 (136)
118 2ytc_A PRE-mRNA-splicing facto 99.4 5E-13 1.7E-17 114.7 10.5 75 51-131 9-84 (85)
119 1wez_A HnRNP H', FTP-3, hetero 99.4 1.8E-13 6.1E-18 123.1 7.9 78 52-132 13-90 (102)
120 2e5j_A Methenyltetrahydrofolat 99.4 5.3E-13 1.8E-17 118.0 10.8 77 52-133 17-93 (97)
121 2dnn_A RNA-binding protein 12; 99.4 3.8E-13 1.3E-17 122.8 10.1 78 53-133 15-92 (109)
122 1why_A Hypothetical protein ri 99.4 7.1E-13 2.4E-17 117.0 11.5 76 52-133 15-92 (97)
123 3r27_A HnRNP L, heterogeneous 99.4 4.9E-13 1.7E-17 120.5 10.5 77 51-133 18-96 (100)
124 2dnq_A RNA-binding protein 4B; 99.4 5E-13 1.7E-17 116.4 10.3 74 52-133 6-79 (90)
125 3egn_A RNA-binding protein 40; 99.4 7.9E-14 2.7E-18 132.0 5.4 83 51-134 42-130 (143)
126 1x4g_A Nucleolysin TIAR; struc 99.4 5.5E-13 1.9E-17 120.4 10.6 77 51-133 22-98 (109)
127 1fjc_A Nucleolin RBD2, protein 99.4 1.9E-13 6.4E-18 120.3 7.1 78 51-133 13-90 (96)
128 2xs2_A Deleted in azoospermia- 99.4 1.5E-13 5.2E-18 122.3 6.6 79 53-134 8-86 (102)
129 2dgt_A RNA-binding protein 30; 99.4 1E-12 3.4E-17 115.0 11.6 75 51-133 7-81 (92)
130 3md3_A Nuclear and cytoplasmic 99.4 9.6E-13 3.3E-17 125.0 12.4 82 51-132 84-165 (166)
131 2jvr_A Nucleolar protein 3; RN 99.4 5.2E-13 1.8E-17 122.4 9.8 77 53-133 27-104 (111)
132 1x4d_A Matrin 3; structural ge 99.4 2.7E-13 9.1E-18 122.6 7.5 76 52-133 13-91 (102)
133 1fxl_A Paraneoplastic encephal 99.4 9.7E-13 3.3E-17 125.1 11.7 80 54-133 2-81 (167)
134 2ad9_A Polypyrimidine tract-bi 99.4 6.2E-13 2.1E-17 123.5 9.5 76 52-133 29-106 (119)
135 2i2y_A Fusion protein consists 99.4 8.3E-13 2.8E-17 126.0 10.4 78 51-133 70-147 (150)
136 1whx_A Hypothetical protein ri 99.4 3.8E-13 1.3E-17 122.5 7.8 76 52-133 8-83 (111)
137 2hvz_A Splicing factor, argini 99.4 4.2E-13 1.4E-17 119.2 7.6 74 55-133 1-74 (101)
138 2lcw_A RNA-binding protein FUS 99.1 2.9E-14 9.8E-19 130.3 0.0 82 52-133 5-94 (116)
139 1b7f_A Protein (SXL-lethal pro 99.4 9.8E-13 3.3E-17 125.6 10.6 81 53-133 2-82 (168)
140 1wf1_A RNA-binding protein RAL 99.4 2.2E-12 7.6E-17 116.6 12.2 73 53-133 26-99 (110)
141 2e44_A Insulin-like growth fac 99.4 1E-12 3.5E-17 115.5 9.7 78 52-133 13-91 (96)
142 2dnp_A RNA-binding protein 14; 99.4 1.4E-12 4.9E-17 113.5 10.5 74 52-133 7-80 (90)
143 2cpj_A Non-POU domain-containi 99.4 1.1E-12 3.8E-17 116.2 9.9 76 52-133 13-88 (99)
144 2g4b_A Splicing factor U2AF 65 99.4 1.4E-12 4.9E-17 125.1 11.3 79 53-131 93-171 (172)
145 1wex_A Hypothetical protein (r 99.4 1.2E-12 4.1E-17 118.5 10.0 76 52-133 13-90 (104)
146 1x4f_A Matrin 3; structural ge 99.4 1.7E-12 5.8E-17 119.3 10.7 77 51-133 22-101 (112)
147 2dgu_A Heterogeneous nuclear r 99.4 2.3E-12 7.9E-17 115.1 11.2 74 52-133 9-82 (103)
148 2kvi_A Nuclear polyadenylated 99.4 1E-12 3.4E-17 116.1 8.3 75 51-133 7-82 (96)
149 1l3k_A Heterogeneous nuclear r 99.4 1.7E-12 5.8E-17 127.3 10.7 82 51-133 10-91 (196)
150 2yh0_A Splicing factor U2AF 65 99.4 4E-12 1.4E-16 124.8 13.3 82 52-133 112-193 (198)
151 2cpd_A Apobec-1 stimulating pr 99.4 5.2E-12 1.8E-16 111.9 12.8 74 52-133 13-88 (99)
152 2e5g_A U6 snRNA-specific termi 99.3 1.9E-12 6.3E-17 113.8 9.0 74 53-132 7-80 (94)
153 2qfj_A FBP-interacting repress 99.3 2.7E-12 9.2E-17 127.8 10.8 82 52-133 123-204 (216)
154 2hgm_A HNRPF protein, heteroge 99.3 1.4E-12 4.7E-17 122.3 7.7 78 52-132 40-119 (126)
155 2cqh_A IGF-II mRNA-binding pro 99.3 2.6E-12 8.8E-17 112.4 9.0 75 52-133 6-82 (93)
156 1x5p_A Negative elongation fac 99.3 7.4E-12 2.5E-16 110.6 12.0 74 52-133 13-86 (97)
157 2dha_A FLJ20171 protein; RRM d 99.3 1.4E-12 4.8E-17 121.7 7.6 79 52-132 21-103 (123)
158 1wg1_A KIAA1579 protein, homol 99.3 2.6E-12 8.8E-17 111.6 8.7 75 52-133 3-77 (88)
159 2dnl_A Cytoplasmic polyadenyla 99.3 2.1E-12 7.2E-17 117.8 8.3 77 52-131 6-85 (114)
160 2cjk_A Nuclear polyadenylated 99.3 1.9E-12 6.6E-17 123.6 8.1 80 53-133 86-165 (167)
161 4f02_A Polyadenylate-binding p 99.3 5.7E-12 1.9E-16 126.9 11.9 80 53-134 102-181 (213)
162 1l3k_A Heterogeneous nuclear r 99.3 5.2E-12 1.8E-16 123.8 10.9 82 52-134 102-183 (196)
163 3beg_B Splicing factor, argini 99.3 2.3E-12 7.8E-17 118.0 7.7 66 53-125 15-80 (115)
164 1b7f_A Protein (SXL-lethal pro 99.3 6.9E-12 2.4E-16 119.7 11.4 80 52-131 87-168 (168)
165 3d2w_A TAR DNA-binding protein 99.3 5.7E-12 2E-16 110.3 9.8 74 52-134 9-84 (89)
166 3md3_A Nuclear and cytoplasmic 99.3 5.4E-12 1.8E-16 119.8 10.0 78 55-133 1-78 (166)
167 2hzc_A Splicing factor U2AF 65 99.3 5.6E-12 1.9E-16 108.4 9.0 71 52-129 4-85 (87)
168 2hgn_A Heterogeneous nuclear r 99.3 8.9E-13 3E-17 125.6 4.2 79 52-133 44-122 (139)
169 2qfj_A FBP-interacting repress 99.3 5.3E-12 1.8E-16 125.6 9.9 82 53-134 27-108 (216)
170 1fxl_A Paraneoplastic encephal 99.3 8.9E-12 3E-16 118.4 10.6 80 52-131 86-167 (167)
171 2diu_A KIAA0430 protein; struc 99.3 6.8E-12 2.3E-16 111.4 8.8 71 54-134 8-84 (96)
172 3nmr_A Cugbp ELAV-like family 99.3 8.1E-12 2.8E-16 119.8 9.8 79 53-132 94-175 (175)
173 2cq2_A Hypothetical protein LO 99.3 9.7E-12 3.3E-16 114.6 9.2 76 52-133 23-105 (114)
174 2cjk_A Nuclear polyadenylated 99.3 7.3E-12 2.5E-16 119.6 8.7 79 53-133 2-80 (167)
175 1sjr_A Polypyrimidine tract-bi 99.3 1.3E-11 4.3E-16 120.6 10.5 78 52-133 44-123 (164)
176 3tyt_A Heterogeneous nuclear r 99.3 1.2E-11 4.2E-16 124.7 10.6 76 53-133 3-79 (205)
177 2pe8_A Splicing factor 45; RRM 99.3 2.5E-11 8.6E-16 110.0 11.3 82 52-133 6-93 (105)
178 3pgw_A U1-A; protein-RNA compl 99.3 1.7E-11 5.9E-16 127.8 11.7 84 50-136 5-92 (282)
179 3nmr_A Cugbp ELAV-like family 99.3 1.5E-11 5E-16 118.0 10.1 80 53-132 2-86 (175)
180 2voo_A Lupus LA protein; RNA-b 99.2 1.6E-11 5.6E-16 122.7 10.4 78 53-132 108-185 (193)
181 3zzy_A Polypyrimidine tract-bi 99.2 2.3E-11 7.9E-16 114.5 10.6 77 52-133 26-105 (130)
182 2e5i_A Heterogeneous nuclear r 99.2 6.7E-11 2.3E-15 110.5 13.1 74 54-133 25-101 (124)
183 2bz2_A Negative elongation fac 99.2 1.8E-11 6.3E-16 113.4 9.2 74 52-133 37-110 (121)
184 1fje_B Nucleolin RBD12, protei 99.2 3.4E-11 1.2E-15 116.1 9.8 77 52-133 97-173 (175)
185 1wf0_A TDP-43, TAR DNA-binding 99.2 1.3E-11 4.5E-16 106.9 6.2 74 53-133 4-77 (88)
186 2adc_A Polypyrimidine tract-bi 99.2 2.9E-11 9.8E-16 123.1 9.7 77 52-133 32-109 (229)
187 3smz_A Protein raver-1, ribonu 99.2 6.4E-11 2.2E-15 123.5 12.1 81 53-133 94-174 (284)
188 2ghp_A U4/U6 snRNA-associated 99.2 3.9E-11 1.3E-15 125.7 10.3 82 51-133 207-290 (292)
189 3smz_A Protein raver-1, ribonu 99.2 8.8E-11 3E-15 122.5 10.8 82 52-134 182-264 (284)
190 1fje_B Nucleolin RBD12, protei 99.1 1.9E-11 6.4E-16 118.0 4.9 81 51-133 10-90 (175)
191 3tyt_A Heterogeneous nuclear r 99.1 9E-11 3.1E-15 118.3 9.3 78 52-131 121-204 (205)
192 3u1l_A PRE-mRNA-splicing facto 99.1 6.8E-11 2.3E-15 122.3 8.4 79 50-134 130-229 (240)
193 1qm9_A Polypyrimidine tract-bi 99.1 8.2E-11 2.8E-15 116.1 7.5 75 54-133 3-78 (198)
194 3sde_A Paraspeckle component 1 99.1 2.4E-10 8.3E-15 118.6 11.0 77 51-133 19-95 (261)
195 2dit_A HIV TAT specific factor 99.1 2.5E-10 8.7E-15 103.7 9.1 78 52-133 13-101 (112)
196 3v4m_A Splicing factor U2AF 65 99.1 4.6E-10 1.6E-14 101.6 10.3 82 52-133 3-96 (105)
197 1qm9_A Polypyrimidine tract-bi 99.1 6.4E-10 2.2E-14 109.6 12.2 78 51-133 117-196 (198)
198 2ghp_A U4/U6 snRNA-associated 99.1 2.6E-10 9E-15 119.4 9.9 81 53-134 116-197 (292)
199 3sde_A Paraspeckle component 1 99.1 3.6E-10 1.2E-14 117.3 10.6 81 52-133 94-178 (261)
200 1jmt_A Splicing factor U2AF 35 99.0 1.3E-10 4.6E-15 104.9 5.1 72 59-131 20-103 (104)
201 2adc_A Polypyrimidine tract-bi 99.0 7.6E-10 2.6E-14 112.5 10.0 77 52-133 149-227 (229)
202 3ue2_A Poly(U)-binding-splicin 99.0 8.7E-10 3E-14 102.0 9.4 81 53-133 19-108 (118)
203 2g4b_A Splicing factor U2AF 65 99.0 9.1E-10 3.1E-14 105.5 9.2 73 53-132 3-86 (172)
204 2yh0_A Splicing factor U2AF 65 99.0 1.4E-09 4.7E-14 106.6 9.4 74 53-133 3-87 (198)
205 3tht_A Alkylated DNA repair pr 98.9 4.3E-09 1.5E-13 114.3 9.4 76 51-132 15-97 (345)
206 2d9o_A DNAJ (HSP40) homolog, s 98.8 3.5E-08 1.2E-12 88.6 10.5 73 54-133 10-89 (100)
207 3s6e_A RNA-binding protein 39; 98.7 4.6E-08 1.6E-12 89.9 10.8 82 53-139 6-97 (114)
208 1owx_A Lupus LA protein, SS-B, 98.7 5.5E-08 1.9E-12 90.4 10.7 89 51-145 15-109 (121)
209 2dnr_A Synaptojanin-1; RRM dom 98.6 8.8E-08 3E-12 84.4 8.4 72 52-132 5-84 (91)
210 1ufw_A Synaptojanin 2; RNP dom 98.4 5.4E-07 1.8E-11 79.8 7.6 71 52-131 13-92 (95)
211 3dxb_A Thioredoxin N-terminall 98.2 2.6E-06 9E-11 85.9 8.4 67 67-133 142-212 (222)
212 2l9w_A U4/U6 snRNA-associated- 97.5 0.00043 1.5E-08 62.8 9.9 71 53-129 20-95 (117)
213 1wey_A Calcipressin 1; structu 96.6 0.0055 1.9E-07 55.1 7.6 74 54-133 5-83 (104)
214 1whv_A Poly(A)-specific ribonu 94.9 0.12 4.1E-06 45.9 9.0 54 54-116 16-69 (100)
215 1uw4_A UPF3X; nonsense mediate 94.7 0.096 3.3E-06 46.0 8.0 68 55-122 2-71 (91)
216 2dhx_A Poly (ADP-ribose) polym 94.2 0.25 8.6E-06 44.3 9.5 68 53-129 7-79 (104)
217 1wwh_A Nucleoporin 35, nucleop 93.8 0.18 6.1E-06 46.4 8.1 70 53-130 23-93 (119)
218 3p3d_A Nucleoporin 53; structu 92.1 0.18 6E-06 47.2 5.4 86 54-143 7-106 (132)
219 3ctr_A Poly(A)-specific ribonu 90.8 0.25 8.7E-06 43.9 4.8 53 57-117 8-60 (101)
220 2kn4_A Immunoglobulin G-bindin 88.1 0.42 1.4E-05 44.7 4.5 36 83-120 2-37 (158)
221 3pq1_A Poly(A) RNA polymerase; 85.8 0.43 1.5E-05 53.5 3.6 55 54-114 53-107 (464)
222 2i2y_A Fusion protein consists 85.3 0.46 1.6E-05 44.2 3.1 40 92-132 9-49 (150)
223 2l08_A Regulator of nonsense t 85.0 0.95 3.2E-05 40.1 4.7 69 54-122 9-79 (97)
224 4gyx_A Type III collagen fragm 71.4 5 0.00017 27.1 3.8 6 8-13 3-8 (31)
225 3d45_A Poly(A)-specific ribonu 61.1 18 0.00063 40.8 8.4 55 54-117 440-494 (507)
226 3m91_B Prokaryotic ubiquitin-l 58.0 3.6 0.00012 30.9 1.3 23 709-731 16-38 (44)
227 2v75_A Nuclear polyadenylated 55.3 32 0.0011 30.2 6.9 61 672-732 6-72 (104)
228 4gyx_A Type III collagen fragm 42.8 31 0.0011 23.2 3.8 16 4-19 2-17 (31)
229 3qks_C DNA double-strand break 37.0 16 0.00055 25.7 1.8 25 680-704 7-31 (34)
230 3m9d_G Prokaryotic ubiquitin-l 28.6 8.1 0.00028 31.6 -1.0 24 708-731 39-62 (68)
231 2g0c_A ATP-dependent RNA helic 28.3 1.1E+02 0.0036 24.8 5.8 67 56-131 2-74 (76)
232 4f25_A Polyadenylate-binding p 20.6 26 0.00089 30.7 0.6 19 52-70 95-113 (115)
No 1
>3v53_A RNA-binding protein 25; PWI, RNA-binding domain; 2.90A {Homo sapiens}
Probab=100.00 E-value=6.7e-38 Score=287.30 Aligned_cols=107 Identities=44% Similarity=0.875 Sum_probs=101.8
Q ss_pred hhHHhhhhcCCCCchhhhcccccccccchhhhhhhhhhhHHHHHHHhhCCchhHHHHHHHHhhhcCCCHHHHHHHHHHhh
Q 004460 641 LDAKQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTIL 720 (752)
Q Consensus 641 ~~~~~l~~~ip~~k~~lf~~~v~w~~vd~~~~~~~~~pwi~kki~e~lG~ee~~lvd~i~~~l~~~~~p~~l~~~l~~~l 720 (752)
+++++|+++||++|++||+|+|+|++||.+.|+++|||||++||+||||++|++||+||+++|..|.+|+.|+++|++||
T Consensus 12 ~~~k~li~~IP~~Ke~Lf~~~i~W~~vd~~~i~~~lkPWI~kKI~E~LG~eEd~LVdfI~~~L~~~~~pk~l~~~L~~~L 91 (119)
T 3v53_A 12 KHIKSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVL 91 (119)
T ss_dssp HSSHHHHHHSCSSHHHHHHSCCCTTTSCHHHHHHTHHHHHHHHHHHHTC---CHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHhcccCChhhhhHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccc
Q 004460 721 DDEAEMFVLKMWRMLIFEIKKVETGLA 747 (752)
Q Consensus 721 d~~a~~fv~~lWr~life~~~~~~gl~ 747 (752)
|++|+.||.+||||||||+++++.||+
T Consensus 92 DeeA~~FV~kLWrlLIfe~ea~~~Gl~ 118 (119)
T 3v53_A 92 DEEAEVFIVKMWRLLIYETEAKKIGLV 118 (119)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 999999999999999999999999997
No 2
>1mp1_A Ser/Arg-related nuclear matrix protein; four helix bundle, RNA binding protein; NMR {Homo sapiens} SCOP: a.188.1.1
Probab=99.87 E-value=1.1e-22 Score=184.97 Aligned_cols=91 Identities=21% Similarity=0.448 Sum_probs=83.2
Q ss_pred CCchhhhcccccccccchhhhhhhhhhhHHHHHHHhhCCchhHHHHHHHHhhhc-CCCHHHHHHHHHHhhh-HHHHHHHH
Q 004460 652 KTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQD-HVKASQMLELLQTILD-DEAEMFVL 729 (752)
Q Consensus 652 ~~k~~lf~~~v~w~~vd~~~~~~~~~pwi~kki~e~lG~ee~~lvd~i~~~l~~-~~~p~~l~~~l~~~ld-~~a~~fv~ 729 (752)
+.++.+|+++|||..|+.. .|||||++||++|||++|++|||||+++|.. +.+|+.|+++|++||+ ++|..||.
T Consensus 5 ~kfp~~f~~kVD~~kV~l~----~ikpWI~kki~e~LG~EDdvlid~i~~~L~~~~~dpk~lqi~L~gFL~~e~a~~Fv~ 80 (111)
T 1mp1_A 5 LKFAECLEKKVDMSKVNLE----VIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMG 80 (111)
T ss_dssp CCCCSGGGGCCCTTTSCSG----GGHHHHHHHHHHHHSSCCSHHHHHHHHHTTSSSCCHHHHHHHHTTTSCSHHHHHHHH
T ss_pred ccCCHHHhccccHHHhhHH----HHHHHHHHHHHHHcCCccHHHHHHHHHHhhccCCCHHHHHHHHHHHhCcccHHHHHH
Confidence 3467899999999999865 4799999999999999999999999999987 6899999999999999 99999999
Q ss_pred HHHHHHHHHHHhhhhccc
Q 004460 730 KMWRMLIFEIKKVETGLA 747 (752)
Q Consensus 730 ~lWr~life~~~~~~gl~ 747 (752)
+||+||||. .+...||.
T Consensus 81 eLW~LLi~a-q~~~~GIP 97 (111)
T 1mp1_A 81 ELWPLLLSA-QENIAGIP 97 (111)
T ss_dssp HHHHHHHHH-TTSSSSCC
T ss_pred HHHHHHHHh-hcCCcCcC
Confidence 999999975 77778875
No 3
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-20 Score=164.63 Aligned_cols=74 Identities=22% Similarity=0.365 Sum_probs=68.6
Q ss_pred cchhhhh-hhhhhhHHHHHHHhhCCchhHHHHHHHHhhhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 004460 667 YDKHELH-ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIK 740 (752)
Q Consensus 667 vd~~~~~-~~~~pwi~kki~e~lG~ee~~lvd~i~~~l~~~~~p~~l~~~l~~~ld~~a~~fv~~lWr~life~~ 740 (752)
||.+.++ +.|||||++||++|||++|++||+||+++|..|.+|+.|+++|++|||++|..||.+||+|||+-+.
T Consensus 8 ~d~~kv~l~~lkpWI~kkv~e~LG~eD~~lVd~i~~~l~~~~dpk~l~~~L~~fLd~~a~~Fv~eLW~lL~~aq~ 82 (92)
T 1x4q_A 8 MALSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTLRFVDKLFEAVEEGRS 82 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTCCHHHHHHHHTTTTGGGTHHHHHHHHHHHHHHSC
T ss_pred ccchHHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence 5555554 7899999999999999999999999999999999999999999999999999999999999997653
No 4
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.74 E-value=1.2e-17 Score=187.15 Aligned_cols=82 Identities=18% Similarity=0.406 Sum_probs=78.3
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||+.|++..|..+|+.||.|..|.|+.++.+|+++|||||+|.+.++|..||..|||+.|+|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 44689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 180 ~~ 181 (437)
T 3pgw_S 180 RG 181 (437)
T ss_pred CC
Confidence 74
No 5
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=143.57 Aligned_cols=82 Identities=21% Similarity=0.323 Sum_probs=78.4
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
..+++|||+|||+++++++|+.+|+.||.|.+|.++.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 64
No 6
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.66 E-value=4e-16 Score=151.24 Aligned_cols=83 Identities=23% Similarity=0.344 Sum_probs=77.1
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G--~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
...++|||||||+++++++|+.+|+.|| .|..|.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred eecch
Q 004460 130 VDQAT 134 (752)
Q Consensus 130 ~a~s~ 134 (752)
++...
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 88653
No 7
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.66 E-value=7.1e-16 Score=140.85 Aligned_cols=85 Identities=15% Similarity=0.242 Sum_probs=80.2
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||+.+++++|+.+|++||.|..+.|+.++.||+++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchHH
Q 004460 132 QATRE 136 (752)
Q Consensus 132 ~s~kk 136 (752)
.....
T Consensus 84 ~~~~~ 88 (110)
T 3s8s_A 84 IKGQQ 88 (110)
T ss_dssp STTHH
T ss_pred CCCcH
Confidence 76543
No 8
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.65 E-value=1.4e-15 Score=139.17 Aligned_cols=82 Identities=17% Similarity=0.270 Sum_probs=77.8
Q ss_pred CCCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
...+.++|||+|||+++++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567999999999999999999999999999999999998899999999999999999999999999999999999998
Q ss_pred ee
Q 004460 130 VD 131 (752)
Q Consensus 130 ~a 131 (752)
|+
T Consensus 116 ~a 117 (118)
T 2khc_A 116 LK 117 (118)
T ss_dssp EC
T ss_pred ec
Confidence 86
No 9
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.63 E-value=3.4e-15 Score=140.50 Aligned_cols=84 Identities=23% Similarity=0.328 Sum_probs=79.5
Q ss_pred CCCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
...+.++|||+|||.++++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||..||+..|+|+.|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44568999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eecc
Q 004460 130 VDQA 133 (752)
Q Consensus 130 ~a~s 133 (752)
++..
T Consensus 118 ~a~~ 121 (139)
T 1u6f_A 118 LAAS 121 (139)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 8764
No 10
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.61 E-value=6.3e-16 Score=138.20 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=80.8
Q ss_pred CCCEEEEccCCC------CCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC-eE
Q 004460 53 PQTKVYVGKIAP------TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-QE 125 (752)
Q Consensus 53 ~~~tVfVgNLp~------~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~G-r~ 125 (752)
..++|||+|||+ .+++..|+.+|+.||.|.++.++.++.||+++|||||+|.+.++|.+||..|||..|+| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999999899999999999999999999999999999999 99
Q ss_pred EEEEeecchHHHH
Q 004460 126 LMLKVDQATREYL 138 (752)
Q Consensus 126 L~V~~a~s~kk~l 138 (752)
|.|.++....+|.
T Consensus 85 l~V~~a~~~~~~~ 97 (100)
T 3ns6_A 85 LFLYTMKDVERYN 97 (100)
T ss_dssp CEEEESHHHHHHH
T ss_pred EEEEECchhhhhh
Confidence 9999998765553
No 11
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.5e-15 Score=138.23 Aligned_cols=82 Identities=18% Similarity=0.266 Sum_probs=77.5
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
....++|||+|||..+++.+|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..|| .||+..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 345789999999999999999999999999999999999888999999999999999999999 8999999999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 101 a~~ 103 (114)
T 2cq4_A 101 SQA 103 (114)
T ss_dssp HHH
T ss_pred cCC
Confidence 765
No 12
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.61 E-value=3.1e-15 Score=132.76 Aligned_cols=79 Identities=14% Similarity=0.230 Sum_probs=76.1
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeE--------EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ 124 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~--------~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr 124 (752)
+.++|||||||.++++++|+.+|+.||.|.. +.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~ 91 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 91 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 4789999999999999999999999999999 99999988999999999999999999999999999999999
Q ss_pred EEEEEee
Q 004460 125 ELMLKVD 131 (752)
Q Consensus 125 ~L~V~~a 131 (752)
.|.|.++
T Consensus 92 ~l~V~~A 98 (99)
T 2la6_A 92 PIKVSFA 98 (99)
T ss_dssp BCEEEEC
T ss_pred EEEEEec
Confidence 9999886
No 13
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=4.8e-15 Score=129.83 Aligned_cols=81 Identities=15% Similarity=0.232 Sum_probs=77.0
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||..+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..||+..|+|+.|.|.|+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 35789999999999999999999999999999999999888999999999999999999999999999999999999986
Q ss_pred c
Q 004460 132 Q 132 (752)
Q Consensus 132 ~ 132 (752)
.
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 14
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.60 E-value=2.4e-16 Score=138.78 Aligned_cols=81 Identities=21% Similarity=0.343 Sum_probs=75.3
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEEee
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMLKVD 131 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~G-~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~L-ng~~I~Gr~L~V~~a 131 (752)
+++|||+|||+.+++++|+.+|+.|| .|.+|.++.++.+|.++|||||+|.+.++|.+||..+ |++.|+|+.|.|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 8999999999999999999999999999999999876 567899999999998
Q ss_pred cch
Q 004460 132 QAT 134 (752)
Q Consensus 132 ~s~ 134 (752)
...
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 653
No 15
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.60 E-value=3.4e-15 Score=128.24 Aligned_cols=81 Identities=21% Similarity=0.362 Sum_probs=77.2
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999986
Q ss_pred c
Q 004460 132 Q 132 (752)
Q Consensus 132 ~ 132 (752)
.
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 16
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.60 E-value=3.8e-15 Score=128.46 Aligned_cols=81 Identities=16% Similarity=0.328 Sum_probs=76.8
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
+.++|||+|||..+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 47899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred c
Q 004460 133 A 133 (752)
Q Consensus 133 s 133 (752)
.
T Consensus 85 ~ 85 (87)
T 3bs9_A 85 R 85 (87)
T ss_dssp -
T ss_pred C
Confidence 4
No 17
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.60 E-value=4.3e-15 Score=127.02 Aligned_cols=80 Identities=18% Similarity=0.325 Sum_probs=76.8
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeecc
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~s 133 (752)
+++|||+|||+.+++++|..+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999865
No 18
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.59 E-value=2e-15 Score=134.58 Aligned_cols=83 Identities=19% Similarity=0.370 Sum_probs=76.6
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCC--eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCc----eeCCe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGT--VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF----NIDGQ 124 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~--I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~----~I~Gr 124 (752)
...-.||||+|||+.+|+++|+.+|+.||. +..|.++.|+.||.++|||||+|.+.++|.+||..|||. .|+|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 344679999999999999999999999995 679999999999999999999999999999999999986 59999
Q ss_pred EEEEEeecc
Q 004460 125 ELMLKVDQA 133 (752)
Q Consensus 125 ~L~V~~a~s 133 (752)
.|.|.|+.+
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999865
No 19
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.59 E-value=5.1e-15 Score=130.64 Aligned_cols=83 Identities=27% Similarity=0.420 Sum_probs=78.8
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
+.++|||+|||..+++++|..+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred chH
Q 004460 133 ATR 135 (752)
Q Consensus 133 s~k 135 (752)
...
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 643
No 20
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.59 E-value=8.8e-15 Score=133.36 Aligned_cols=82 Identities=17% Similarity=0.281 Sum_probs=78.0
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||+++++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||..||+..|+|+.|.|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 103 ~~ 104 (115)
T 2cpz_A 103 RS 104 (115)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 21
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=7.2e-15 Score=128.78 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=77.9
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..||+..|+|+.|.|.|+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 22
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.1e-15 Score=131.95 Aligned_cols=82 Identities=21% Similarity=0.404 Sum_probs=78.2
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||+.+++++|..+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||..||+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 93 ~~ 94 (105)
T 1x5u_A 93 SA 94 (105)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 23
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6.9e-15 Score=130.37 Aligned_cols=82 Identities=23% Similarity=0.381 Sum_probs=77.7
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
..+.++|||+|||..+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||. ||+..|+|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3457899999999999999999999999999999999998899999999999999999999999 999999999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 86 a~~ 88 (99)
T 2dgs_A 86 AEP 88 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 24
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.4e-15 Score=132.56 Aligned_cols=82 Identities=17% Similarity=0.187 Sum_probs=78.2
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||..+++.+|..+|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 101 ~~ 102 (106)
T 1p27_B 101 FV 102 (106)
T ss_dssp EE
T ss_pred cC
Confidence 64
No 25
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=6.9e-15 Score=129.07 Aligned_cols=82 Identities=23% Similarity=0.431 Sum_probs=78.0
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||..+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..||+..|+|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 83 ~~ 84 (95)
T 2dnz_A 83 TE 84 (95)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 26
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.58 E-value=6.6e-15 Score=133.02 Aligned_cols=83 Identities=22% Similarity=0.235 Sum_probs=78.6
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
..+.++|||+|||..+++.+|..+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 103 a~~ 105 (110)
T 1oo0_B 103 CFV 105 (110)
T ss_dssp SEE
T ss_pred ccc
Confidence 864
No 27
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=4.6e-15 Score=132.46 Aligned_cols=83 Identities=20% Similarity=0.326 Sum_probs=78.7
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
..+.++|||+|||..+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..||+..|+|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34578999999999999999999999999999999999988899999999999999999999999999999999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 90 a~~ 92 (103)
T 2dnm_A 90 ARY 92 (103)
T ss_dssp CSS
T ss_pred CCc
Confidence 864
No 28
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1e-14 Score=129.18 Aligned_cols=83 Identities=16% Similarity=0.256 Sum_probs=78.6
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
..+.++|||+|||..+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..||+..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 85 a~~ 87 (99)
T 1whw_A 85 STI 87 (99)
T ss_dssp CCC
T ss_pred cCC
Confidence 865
No 29
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.5e-14 Score=128.45 Aligned_cols=81 Identities=17% Similarity=0.361 Sum_probs=77.0
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||..+++++|+.+|+.||.|..+.++.++ +|.++|||||+|.+.++|..||..||+..|+|+.|.|.++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 457899999999999999999999999999999999996 9999999999999999999999999999999999999988
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 94 ~~ 95 (100)
T 2do4_A 94 NS 95 (100)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 30
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.57 E-value=1.1e-14 Score=125.79 Aligned_cols=80 Identities=24% Similarity=0.380 Sum_probs=75.1
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
..+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+. +++..|+|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 3457899999999999999999999999999999999998899999999999999999999997 688899999999987
Q ss_pred e
Q 004460 131 D 131 (752)
Q Consensus 131 a 131 (752)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 4
No 31
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.57 E-value=7.2e-15 Score=133.35 Aligned_cols=83 Identities=23% Similarity=0.432 Sum_probs=78.5
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
..+.++|||+|||..+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44578999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 103 a~~ 105 (108)
T 2jrs_A 103 VTE 105 (108)
T ss_dssp SCS
T ss_pred ccc
Confidence 754
No 32
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.57 E-value=1.9e-15 Score=132.15 Aligned_cols=80 Identities=19% Similarity=0.296 Sum_probs=72.4
Q ss_pred CEEEEccCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 55 TKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lFs~~G--~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
.+|||||||+++++++|+.+|+.|| .|.++.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999998999999999999999999999999999999999999998876
Q ss_pred ch
Q 004460 133 AT 134 (752)
Q Consensus 133 s~ 134 (752)
..
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 53
No 33
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.57 E-value=1.6e-14 Score=131.56 Aligned_cols=83 Identities=16% Similarity=0.315 Sum_probs=78.8
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
..+.++|||+|||..+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||..||+..|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34588999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 92 a~~ 94 (115)
T 2dgo_A 92 ATR 94 (115)
T ss_dssp SSC
T ss_pred ccC
Confidence 764
No 34
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=9.9e-15 Score=130.31 Aligned_cols=83 Identities=18% Similarity=0.292 Sum_probs=78.8
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
..+.++|||+|||..+++++|..+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||..||+..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34579999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 92 a~~ 94 (103)
T 2cq0_A 92 AKP 94 (103)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 35
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.57 E-value=7.8e-15 Score=128.74 Aligned_cols=81 Identities=22% Similarity=0.434 Sum_probs=76.2
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||+.+++++|+.+|+.||.|..|.++.++ +|.++|||||+|.+.++|..|+..||+..|+|+.|.|.++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 457899999999999999999999999999999999986 5999999999999999999999999999999999999987
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
.+
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 36
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.57 E-value=7.5e-15 Score=134.49 Aligned_cols=78 Identities=18% Similarity=0.378 Sum_probs=73.2
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeecc
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~s 133 (752)
.++|||||||+.+++++|+.+|+.||.|.+|.|+.+. +.++|||||+|.+.++|..||..|||..|+|+.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 6789999999999999999999999999999999983 55899999999999999999999999999999999998764
No 37
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=7e-15 Score=129.27 Aligned_cols=82 Identities=17% Similarity=0.370 Sum_probs=78.0
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEE-EEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~-ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
.+.++|||+|||+.+++++|..+|+.||.|..+ .++.++.+|.++|||||+|.+.++|..|+..||+..|+|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 9999988999999999999999999999999999999999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 83 a~~ 85 (96)
T 1x5t_A 83 AFK 85 (96)
T ss_dssp SCC
T ss_pred ecc
Confidence 764
No 38
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.2e-14 Score=131.13 Aligned_cols=82 Identities=18% Similarity=0.359 Sum_probs=78.1
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC------CceeCCeE
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN------KFNIDGQE 125 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Ln------g~~I~Gr~ 125 (752)
.+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||..|| +..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 457899999999999999999999999999999999998899999999999999999999999999 99999999
Q ss_pred EEEEeecc
Q 004460 126 LMLKVDQA 133 (752)
Q Consensus 126 L~V~~a~s 133 (752)
|.|.++..
T Consensus 93 l~v~~a~~ 100 (111)
T 1x4h_A 93 LKVDLAVT 100 (111)
T ss_dssp EEEECCCC
T ss_pred EEEEECCC
Confidence 99998764
No 39
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.57 E-value=1.3e-14 Score=130.20 Aligned_cols=80 Identities=18% Similarity=0.241 Sum_probs=76.6
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||+.+++.+|..+|+.||.|..+.++.++ +|.++|||||+|.+.++|..||..||+..|+|+.|.|.++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 457899999999999999999999999999999999996 9999999999999999999999999999999999999987
Q ss_pred c
Q 004460 132 Q 132 (752)
Q Consensus 132 ~ 132 (752)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 40
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=9.1e-15 Score=130.14 Aligned_cols=82 Identities=21% Similarity=0.359 Sum_probs=78.2
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||..+++++|..+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||..||+..|+|+.|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 90 ~~ 91 (102)
T 2cqb_A 90 KP 91 (102)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 41
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.4e-14 Score=129.82 Aligned_cols=83 Identities=20% Similarity=0.417 Sum_probs=78.3
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeec-CCCCCCccEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEE
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQY-PSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELML 128 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d-~~tGk~kGfgFVeF~~~esA~~Al~~L-ng~~I~Gr~L~V 128 (752)
..+.++|||+|||..+++++|+.+|+.||.|..|.++.+ +.+|.++|||||+|.+.++|..||..| |+..|+|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 345789999999999999999999999999999999998 679999999999999999999999999 999999999999
Q ss_pred Eeecc
Q 004460 129 KVDQA 133 (752)
Q Consensus 129 ~~a~s 133 (752)
.|+..
T Consensus 92 ~~a~~ 96 (107)
T 2cph_A 92 EWADS 96 (107)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 98865
No 42
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.56 E-value=1.1e-14 Score=130.62 Aligned_cols=83 Identities=17% Similarity=0.281 Sum_probs=78.2
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee---CCeEEE
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI---DGQELM 127 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I---~Gr~L~ 127 (752)
..+.++|||+|||..+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||..||+..+ +|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999988 899999
Q ss_pred EEeecc
Q 004460 128 LKVDQA 133 (752)
Q Consensus 128 V~~a~s 133 (752)
|.++..
T Consensus 90 v~~a~~ 95 (106)
T 2dgp_A 90 VKPADS 95 (106)
T ss_dssp EEECCC
T ss_pred EEECCc
Confidence 998864
No 43
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-14 Score=129.16 Aligned_cols=82 Identities=18% Similarity=0.361 Sum_probs=78.1
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..||+..|+|+.|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 90 ~~ 91 (102)
T 1x5s_A 90 GK 91 (102)
T ss_dssp EC
T ss_pred CC
Confidence 64
No 44
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.5e-14 Score=131.29 Aligned_cols=83 Identities=19% Similarity=0.331 Sum_probs=78.1
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCee--------EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVK--------SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~--------~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~ 122 (752)
..+.++|||+|||+.+++++|+.+|+.||.|. .+.++.++.+|.++|||||+|.+.++|..||..||+..|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 44589999999999999999999999999999 6999999889999999999999999999999999999999
Q ss_pred CeEEEEEeecc
Q 004460 123 GQELMLKVDQA 133 (752)
Q Consensus 123 Gr~L~V~~a~s 133 (752)
|+.|.|.++..
T Consensus 92 g~~l~V~~a~~ 102 (113)
T 2cpe_A 92 GSKLKVSLARK 102 (113)
T ss_dssp TEECEEECSSC
T ss_pred CCEEEEEECCC
Confidence 99999998764
No 45
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.55 E-value=3e-15 Score=133.52 Aligned_cols=80 Identities=20% Similarity=0.424 Sum_probs=73.8
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP-SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~-~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
...++|||||||+++++++|+.+|+.|| |..+.++.++ .+|.++|||||+|.+.++|..|| .|||..|+|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 3478999999999999999999999999 9999999987 58999999999999999999999 7999999999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 95 a~~ 97 (100)
T 2j76_E 95 ADQ 97 (100)
T ss_dssp CCC
T ss_pred ccC
Confidence 864
No 46
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.55 E-value=1.2e-14 Score=134.44 Aligned_cols=82 Identities=17% Similarity=0.187 Sum_probs=78.1
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||+.+++++|..+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 34789999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 100 ~~ 101 (126)
T 3ex7_B 100 FV 101 (126)
T ss_dssp EE
T ss_pred cC
Confidence 64
No 47
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.5e-14 Score=128.12 Aligned_cols=82 Identities=21% Similarity=0.368 Sum_probs=77.6
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCee-EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeE----E
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVK-SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE----L 126 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~-~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~----L 126 (752)
.+.++|||+|||+++++++|+.+|+.||.|. .+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3578999999999999999999999999999 9999999889999999999999999999999999999999999 9
Q ss_pred EEEeecc
Q 004460 127 MLKVDQA 133 (752)
Q Consensus 127 ~V~~a~s 133 (752)
.|.|+..
T Consensus 87 ~v~~a~~ 93 (99)
T 2div_A 87 KLNYATY 93 (99)
T ss_dssp CEEETTC
T ss_pred EEeecCC
Confidence 9988754
No 48
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.55 E-value=1.4e-14 Score=131.56 Aligned_cols=83 Identities=20% Similarity=0.322 Sum_probs=74.2
Q ss_pred CCCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
...+.++|||+|||+.+++++|..+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||..+ +..|+|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3455789999999999999999999999999999999999889999999999999999999999965 599999999999
Q ss_pred eecc
Q 004460 130 VDQA 133 (752)
Q Consensus 130 ~a~s 133 (752)
++..
T Consensus 100 ~a~~ 103 (109)
T 2rs2_A 100 VAFP 103 (109)
T ss_dssp ECCC
T ss_pred EccC
Confidence 8764
No 49
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.55 E-value=2.5e-14 Score=127.91 Aligned_cols=81 Identities=21% Similarity=0.359 Sum_probs=76.7
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC---eEEEE
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG---QELML 128 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~G---r~L~V 128 (752)
.+.++|||+|||..+++++|..+|+.||.|..|.++.++ +|.++|||||+|.+.++|..||..||+..|.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 457999999999999999999999999999999999996 89999999999999999999999999999998 99999
Q ss_pred Eeecc
Q 004460 129 KVDQA 133 (752)
Q Consensus 129 ~~a~s 133 (752)
.++..
T Consensus 92 ~~a~~ 96 (105)
T 2dnh_A 92 KFADT 96 (105)
T ss_dssp EESCS
T ss_pred EECcc
Confidence 98865
No 50
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.3e-14 Score=128.14 Aligned_cols=82 Identities=20% Similarity=0.405 Sum_probs=76.5
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCC---CCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPS---NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~---tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (752)
.+.++|||+|||+.+++++|+.+|+.||.|..|.++.++. +|.++|||||+|.+.++|..||..||+..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3578999999999999999999999999999999998865 6689999999999999999999999999999999999
Q ss_pred Eeecc
Q 004460 129 KVDQA 133 (752)
Q Consensus 129 ~~a~s 133 (752)
.++..
T Consensus 83 ~~a~~ 87 (98)
T 2cpf_A 83 RISER 87 (98)
T ss_dssp ECSSC
T ss_pred EEccC
Confidence 98764
No 51
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=5e-14 Score=125.69 Aligned_cols=81 Identities=21% Similarity=0.311 Sum_probs=75.0
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
..+.++|||+|||+.+++++|+.+|+.||.|..|.++.++ +.++|||||+|.+.++|..||..||+..|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 4457999999999999999999999999999999999884 34789999999999999999999999999999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 90 a~~ 92 (103)
T 2cqi_A 90 ATT 92 (103)
T ss_dssp CCC
T ss_pred CCC
Confidence 865
No 52
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.54 E-value=2e-14 Score=124.41 Aligned_cols=79 Identities=24% Similarity=0.417 Sum_probs=75.6
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeecc
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~s 133 (752)
.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+ .|||..|+|+.|.|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 579999999999999999999999999999999999889999999999999999999999 8999999999999998754
No 53
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.54 E-value=4e-14 Score=132.61 Aligned_cols=81 Identities=21% Similarity=0.356 Sum_probs=76.6
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
..+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34589999999999999999999999999999999999988999999999999999999999999999999999999987
Q ss_pred e
Q 004460 131 D 131 (752)
Q Consensus 131 a 131 (752)
+
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 54
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.54 E-value=1.1e-13 Score=127.95 Aligned_cols=82 Identities=16% Similarity=0.224 Sum_probs=77.8
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
..+.++|||+|||..+++++|+.+|+.||.|..|.++.++ +|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3457899999999999999999999999999999999997 999999999999999999999999999999999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 111 a~~ 113 (124)
T 2kt5_A 111 VAS 113 (124)
T ss_dssp ECC
T ss_pred eCC
Confidence 864
No 55
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.54 E-value=1.8e-14 Score=124.24 Aligned_cols=81 Identities=25% Similarity=0.430 Sum_probs=75.9
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCC-CccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGT-PKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk-~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
..++|||+|||.++++++|..+|+.||.|..+.++.+..++. ++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999876665 9999999999999999999999999999999999987
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 56
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.2e-14 Score=131.17 Aligned_cols=80 Identities=18% Similarity=0.160 Sum_probs=74.8
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
...++|||||||+.+++++|..+|+.||.|.+|.++.++. |.++|||||+|.+.++|..||. +|+..|+|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3468999999999999999999999999999999999975 9999999999999999999999 9999999999999876
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 53
No 57
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=6.2e-15 Score=131.54 Aligned_cols=83 Identities=29% Similarity=0.536 Sum_probs=78.7
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||..+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cch
Q 004460 132 QAT 134 (752)
Q Consensus 132 ~s~ 134 (752)
...
T Consensus 86 ~~~ 88 (104)
T 1p1t_A 86 ASE 88 (104)
T ss_dssp TCT
T ss_pred CCc
Confidence 764
No 58
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.54 E-value=3.5e-14 Score=126.90 Aligned_cols=80 Identities=18% Similarity=0.321 Sum_probs=75.8
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||+.+++++|+.+|+.|| |..|.++.++.+|.++|||||+|.+.++|..|| .||+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3478999999999999999999999997 999999999889999999999999999999999 79999999999999987
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 91 ~~ 92 (103)
T 2dng_A 91 EG 92 (103)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 59
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.53 E-value=2.6e-14 Score=138.91 Aligned_cols=83 Identities=22% Similarity=0.235 Sum_probs=78.4
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
..+.++|||+|||+.+++..|..+|+.||.|..|.|+.++.+|.++|||||+|.+.+.|..||..|||..|+|+.|.|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 149 a~~ 151 (165)
T 1rk8_A 149 CFV 151 (165)
T ss_dssp SEE
T ss_pred ecC
Confidence 865
No 60
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.53 E-value=9.3e-15 Score=131.63 Aligned_cols=82 Identities=13% Similarity=0.255 Sum_probs=74.8
Q ss_pred CCCCEEEEccCCCCC------CHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCe-
Q 004460 52 KPQTKVYVGKIAPTA------DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ- 124 (752)
Q Consensus 52 ~~~~tVfVgNLp~~v------te~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr- 124 (752)
...++|||||||+.+ +...|..+|+.||.|..|.++ ..+|.++|||||+|.+.++|..||..|||..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 347899999999999 678999999999999999988 36899999999999999999999999999999998
Q ss_pred EEEEEeecchH
Q 004460 125 ELMLKVDQATR 135 (752)
Q Consensus 125 ~L~V~~a~s~k 135 (752)
.|.|.++....
T Consensus 91 ~l~V~~a~~~~ 101 (105)
T 2nlw_A 91 TFRVNLFTDFD 101 (105)
T ss_dssp EEEEECSCCCC
T ss_pred eEEEEEcchHh
Confidence 99999876543
No 61
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.53 E-value=1.3e-14 Score=136.10 Aligned_cols=83 Identities=16% Similarity=0.221 Sum_probs=78.6
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
..+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 123 a~~ 125 (129)
T 2kxn_B 123 SIT 125 (129)
T ss_dssp CSS
T ss_pred ecC
Confidence 764
No 62
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.53 E-value=2.5e-14 Score=131.45 Aligned_cols=81 Identities=15% Similarity=0.322 Sum_probs=77.1
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||.++++++|..+|+.||.|..|.++.+. +|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 457899999999999999999999999999999999996 9999999999999999999999999999999999999987
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 84 ~~ 85 (116)
T 2fy1_A 84 KK 85 (116)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 63
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.1e-14 Score=130.34 Aligned_cols=81 Identities=19% Similarity=0.243 Sum_probs=75.0
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
....++|||+|||..+++++|+.+|+.||.|..+.++.+. +.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999883 45899999999999999999999999999999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 104 a~~ 106 (109)
T 2err_A 104 ATA 106 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 64
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.3e-14 Score=128.95 Aligned_cols=83 Identities=18% Similarity=0.285 Sum_probs=77.7
Q ss_pred CCCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
...+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||..||+ .|+|+.|.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 345689999999999999999999999999999999999988999999999999999999999999998 8999999999
Q ss_pred eecc
Q 004460 130 VDQA 133 (752)
Q Consensus 130 ~a~s 133 (752)
++..
T Consensus 92 ~a~~ 95 (116)
T 2cqd_A 92 LAYL 95 (116)
T ss_dssp ESTT
T ss_pred Eccc
Confidence 8753
No 65
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.53 E-value=9e-15 Score=136.89 Aligned_cols=81 Identities=16% Similarity=0.358 Sum_probs=76.6
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeE--EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCc----eeCCeE
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF----NIDGQE 125 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~--~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~----~I~Gr~ 125 (752)
.+.++|||||||+.+++++|+.+|+.||.|.. |.|+.++.+|.++|||||+|.+. +|..||..|||. .|+|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45789999999999999999999999999977 99999988999999999999999 999999999999 999999
Q ss_pred EEEEeecc
Q 004460 126 LMLKVDQA 133 (752)
Q Consensus 126 L~V~~a~s 133 (752)
|.|.++..
T Consensus 100 l~V~~a~~ 107 (131)
T 2m2b_A 100 INVEFAKG 107 (131)
T ss_dssp CCCEECCC
T ss_pred EEEEECCC
Confidence 99998865
No 66
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.5e-14 Score=127.08 Aligned_cols=79 Identities=23% Similarity=0.454 Sum_probs=75.0
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC-CCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN-GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~t-Gk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
+.++|||+|||+.+++++|+.+|+.|| |..|.++.++.+ |.++|||||+|.+.++|..|| .||+..|+|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEc
Confidence 468999999999999999999999999 999999999877 999999999999999999999 89999999999999988
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 92 ~~ 93 (104)
T 1wi8_A 92 DQ 93 (104)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 67
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.2e-14 Score=130.87 Aligned_cols=81 Identities=21% Similarity=0.336 Sum_probs=76.6
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||.. |+..|+|+.|.|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3468999999999999999999999999999999999988999999999999999999999996 999999999999987
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 104 ~~ 105 (116)
T 1x4b_A 104 VA 105 (116)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 68
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.53 E-value=1.5e-14 Score=133.34 Aligned_cols=80 Identities=19% Similarity=0.370 Sum_probs=76.2
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
..++|||+|||.++++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..|| .|||..|+|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999999889999999999999999999999 799999999999999876
Q ss_pred c
Q 004460 133 A 133 (752)
Q Consensus 133 s 133 (752)
.
T Consensus 114 ~ 114 (124)
T 2jwn_A 114 T 114 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 69
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.4e-14 Score=126.81 Aligned_cols=81 Identities=25% Similarity=0.341 Sum_probs=76.6
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
..+.++|||+|||+.+++++|+.+|+.||.|..|.++.+ +|.++|||||+|.+.++|..||..||+..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 345889999999999999999999999999999999987 899999999999999999999999999999999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 90 a~~ 92 (103)
T 2d9p_A 90 AQR 92 (103)
T ss_dssp CSS
T ss_pred ecc
Confidence 864
No 70
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.5e-14 Score=128.07 Aligned_cols=83 Identities=19% Similarity=0.295 Sum_probs=77.7
Q ss_pred CCCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
...+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||.. |+..|+|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 345579999999999999999999999999999999999988999999999999999999999997 9999999999998
Q ss_pred eecc
Q 004460 130 VDQA 133 (752)
Q Consensus 130 ~a~s 133 (752)
++..
T Consensus 91 ~a~~ 94 (105)
T 2dh8_A 91 PCTP 94 (105)
T ss_dssp CSCC
T ss_pred EccC
Confidence 7754
No 71
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=2.1e-14 Score=126.88 Aligned_cols=81 Identities=21% Similarity=0.227 Sum_probs=76.2
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
...++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..||+..|+|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34689999999999999999999999999998888888889999999999999999999999999999999999999987
Q ss_pred c
Q 004460 132 Q 132 (752)
Q Consensus 132 ~ 132 (752)
.
T Consensus 93 ~ 93 (98)
T 2cqp_A 93 S 93 (98)
T ss_dssp S
T ss_pred C
Confidence 5
No 72
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.52 E-value=3.2e-14 Score=124.04 Aligned_cols=80 Identities=25% Similarity=0.423 Sum_probs=75.3
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||..+++++|+.+|+.||.|..+.++.+ +|.++|||||+|.+.++|..|+..||+..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35789999999999999999999999999999999874 8999999999999999999999999999999999999987
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 84 ~~ 85 (92)
T 2dgv_A 84 RN 85 (92)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 73
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5.9e-15 Score=127.03 Aligned_cols=81 Identities=17% Similarity=0.289 Sum_probs=76.0
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||+++++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999888654
Q ss_pred c
Q 004460 132 Q 132 (752)
Q Consensus 132 ~ 132 (752)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 74
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2e-14 Score=128.35 Aligned_cols=81 Identities=21% Similarity=0.359 Sum_probs=76.7
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhh-cCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce-eCCeEEEEE
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKV-CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN-IDGQELMLK 129 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~-~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~-I~Gr~L~V~ 129 (752)
.+.++|||+|||+++++++|..+|+. ||.|..+.++.++ +|.++|||||+|.+.++|..||..||+.. |+|+.|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 45789999999999999999999999 9999999999997 99999999999999999999999999999 999999998
Q ss_pred eecc
Q 004460 130 VDQA 133 (752)
Q Consensus 130 ~a~s 133 (752)
++..
T Consensus 86 ~a~~ 89 (104)
T 2dhg_A 86 VAIP 89 (104)
T ss_dssp BCCC
T ss_pred EccC
Confidence 8754
No 75
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=9.7e-14 Score=123.82 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=74.9
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
..+.++|||+|||+.+++++|+.+|+.||.|..|.++.++ +.++|||||+|.+.++|..||..||+..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT--TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457999999999999999999999999999999999874 34899999999999999999999999999999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 90 a~~ 92 (103)
T 2cq3_A 90 ATA 92 (103)
T ss_dssp CCS
T ss_pred ccc
Confidence 764
No 76
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.52 E-value=1.4e-14 Score=121.77 Aligned_cols=75 Identities=21% Similarity=0.313 Sum_probs=71.9
Q ss_pred EEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 56 tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
+|||+|||+++++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+. ||+..|+|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998899999999999999999999998 9999999999999864
No 77
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=6.2e-14 Score=127.24 Aligned_cols=81 Identities=17% Similarity=0.293 Sum_probs=76.4
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||+.+++++|+.+|+.||.|..|.++.++ +|.++|||||+|.+.++|..||..||+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 457899999999999999999999999999999999985 7999999999999999999999999999999999999987
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 92 ~~ 93 (114)
T 2do0_A 92 ER 93 (114)
T ss_dssp SC
T ss_pred cc
Confidence 53
No 78
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=9.1e-14 Score=124.00 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=75.5
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
..+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||. ++..|+|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3457899999999999999999999999999999999998899999999999999999999999 57899999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 90 a~~ 92 (103)
T 2cqg_A 90 PNS 92 (103)
T ss_dssp CCT
T ss_pred cCC
Confidence 764
No 79
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.51 E-value=1.7e-14 Score=126.63 Aligned_cols=81 Identities=21% Similarity=0.219 Sum_probs=75.5
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..||+..|+|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 46899999999999999999999999999988888888899999999999999999999999999999999999998865
Q ss_pred c
Q 004460 133 A 133 (752)
Q Consensus 133 s 133 (752)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 80
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=8.1e-14 Score=121.57 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=75.4
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
....++|||+|||+.+++++|+.+|+.| .|..+.++.+ .+|.++|||||+|.+.++|..||. ||+..|+|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3457899999999999999999999999 8999999999 799999999999999999999999 999999999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 84 a~~ 86 (91)
T 2dgw_A 84 EKS 86 (91)
T ss_dssp ESS
T ss_pred CCc
Confidence 764
No 81
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.51 E-value=6.8e-14 Score=134.22 Aligned_cols=82 Identities=18% Similarity=0.281 Sum_probs=78.4
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 148 ~~ 149 (158)
T 2kn4_A 148 RY 149 (158)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 82
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=7.1e-14 Score=123.67 Aligned_cols=78 Identities=14% Similarity=0.206 Sum_probs=72.9
Q ss_pred CCCEEEEccCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004460 53 PQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~----~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (752)
+.++|||+|||+.+++++|+ .+|+.||.|..|.++.++.+ +|||||+|.+.++|..||..|||..|+|+.|.|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 47899999999999999999 99999999999999988544 889999999999999999999999999999999
Q ss_pred Eeecc
Q 004460 129 KVDQA 133 (752)
Q Consensus 129 ~~a~s 133 (752)
.++..
T Consensus 85 ~~a~~ 89 (96)
T 2dgx_A 85 SLATG 89 (96)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 98864
No 83
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=1.4e-14 Score=122.12 Aligned_cols=76 Identities=22% Similarity=0.359 Sum_probs=73.0
Q ss_pred CEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
++|||+|||+++++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..++ ..|+|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999998899999999999999999999999899 9999999999876
No 84
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=4.9e-14 Score=132.22 Aligned_cols=84 Identities=12% Similarity=0.260 Sum_probs=74.4
Q ss_pred CCCCEEEEccCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004460 52 KPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~----~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~ 127 (752)
.+.++|||||||+.+++++|+ .+|++||.|..|.+. .+|.++|||||+|.+.++|..|+..|||..|.|+.|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 347899999999999998765 799999999998774 3789999999999999999999999999999999999
Q ss_pred EEeecchHHHH
Q 004460 128 LKVDQATREYL 138 (752)
Q Consensus 128 V~~a~s~kk~l 138 (752)
|.|+......+
T Consensus 104 V~~a~~~~~~~ 114 (127)
T 2a3j_A 104 ITFSETPQSQV 114 (127)
T ss_dssp EEECCCCCHHH
T ss_pred EEEccCcchhc
Confidence 99987654433
No 85
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.51 E-value=7.3e-14 Score=134.16 Aligned_cols=82 Identities=21% Similarity=0.307 Sum_probs=78.6
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||..+++++|..+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..||+..|+|+.|.|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 117 ~~ 118 (156)
T 1h2v_Z 117 AG 118 (156)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 86
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.6e-14 Score=130.69 Aligned_cols=81 Identities=21% Similarity=0.250 Sum_probs=74.3
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
...++|||+|||+.+++++|..+|+.||.|..+.++.+..+|.++|||||+|.+.++|..||. ||+..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 456899999999999999999999999999886666666799999999999999999999999 9999999999999987
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 64
No 87
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.50 E-value=5.9e-14 Score=129.33 Aligned_cols=81 Identities=17% Similarity=0.150 Sum_probs=75.1
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCC---eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGT---VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~---I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~ 127 (752)
....++|||+|||+++++++|+.+|+.||. |..|.|+.++ .|+++|||||+|.+.++|..||. ||+..|+|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~-~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTR-EGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECS-SSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECC-CCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345789999999999999999999999999 8999999986 49999999999999999999999 999999999999
Q ss_pred EEeecc
Q 004460 128 LKVDQA 133 (752)
Q Consensus 128 V~~a~s 133 (752)
|.++..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 988753
No 88
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.2e-13 Score=122.86 Aligned_cols=79 Identities=19% Similarity=0.365 Sum_probs=73.1
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||+.+++++|+.+|+.||.|..|.+.. ++.++|||||+|.+.++|..||..||+..|+|+.|.|.|+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 3578999999999999999999999999999999854 4668999999999999999999999999999999999987
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 97 ~~ 98 (109)
T 1x4a_A 97 RS 98 (109)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 89
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.6e-13 Score=124.62 Aligned_cols=82 Identities=26% Similarity=0.356 Sum_probs=76.3
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee--------C
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI--------D 122 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I--------~ 122 (752)
..+.++|||+|||+.+++++|+.+|+.||.|..+.++.++ +|.++|||||+|.+.++|..||..|||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4457899999999999999999999999999999999997 999999999999999999999999999999 5
Q ss_pred CeEEEEEeecc
Q 004460 123 GQELMLKVDQA 133 (752)
Q Consensus 123 Gr~L~V~~a~s 133 (752)
++.|.|.|+..
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 78899998764
No 90
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=6.4e-14 Score=127.97 Aligned_cols=80 Identities=16% Similarity=0.184 Sum_probs=75.2
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCe-eEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTV-KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I-~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
.+.++|||+|||+.+++++|+.+|+.||.| ..|.|+.++ +|.++|||||+|.+.++|..||.. |+..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 357899999999999999999999999999 899999997 999999999999999999999996 99999999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 91 a~~ 93 (114)
T 2cpy_A 91 VTL 93 (114)
T ss_dssp ECH
T ss_pred CCH
Confidence 764
No 91
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.49 E-value=1.3e-14 Score=126.27 Aligned_cols=79 Identities=25% Similarity=0.404 Sum_probs=73.9
Q ss_pred CEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeecch
Q 004460 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 134 (752)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~s~ 134 (752)
++|||+|||..+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.+ |..|+..|||..|+|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999889999999999999999 99999999999999999999988653
No 92
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=6.2e-14 Score=126.21 Aligned_cols=81 Identities=17% Similarity=0.277 Sum_probs=75.8
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCC-eeEEEEe-ecCCCCCCccEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEE
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRA-QYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELML 128 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~-I~~~ki~-~d~~tGk~kGfgFVeF~~~esA~~Al~~Ln--g~~I~Gr~L~V 128 (752)
+.++|||+|||+.+++++|+.+|+.||. |..+.++ .+..+|.++|||||+|.+.++|..|+..|| ++.|+|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4789999999999999999999999998 9999998 777889999999999999999999999996 59999999999
Q ss_pred Eeecc
Q 004460 129 KVDQA 133 (752)
Q Consensus 129 ~~a~s 133 (752)
.|+..
T Consensus 87 ~~a~~ 91 (109)
T 2dis_A 87 DWAEP 91 (109)
T ss_dssp EESCS
T ss_pred EEcCC
Confidence 98864
No 93
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.49 E-value=3.6e-14 Score=145.79 Aligned_cols=82 Identities=18% Similarity=0.284 Sum_probs=77.2
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G--~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
..++|||+||++.+++++|+.+|+.|| .|..|.|+.++.+|+++|||||+|.+.++|.+||..||+..|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 578999999999999999999999999 999999999989999999999999999999999999999999999999999
Q ss_pred ecch
Q 004460 131 DQAT 134 (752)
Q Consensus 131 a~s~ 134 (752)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8754
No 94
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.49 E-value=1.3e-14 Score=129.10 Aligned_cols=80 Identities=21% Similarity=0.363 Sum_probs=73.5
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||+++++++|+.+|+.||.|.. .++.+..+|.++|||||+|.+.++|..||. ||+..|+|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35789999999999999999999999999888 666666789999999999999999999999 9999999999999987
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 93 ~~ 94 (101)
T 1fj7_A 93 KG 94 (101)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 95
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.49 E-value=3.4e-14 Score=125.08 Aligned_cols=83 Identities=13% Similarity=0.306 Sum_probs=75.1
Q ss_pred CCCCCEEEEccCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 004460 51 EKPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~----~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L 126 (752)
..+.++|||+|||..+++++|+ .+|+.||.|..+.++. +|.++|||||+|.+.++|..|+..|||..|+|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3457899999999999999999 9999999999998863 67889999999999999999999999999999999
Q ss_pred EEEeecchHH
Q 004460 127 MLKVDQATRE 136 (752)
Q Consensus 127 ~V~~a~s~kk 136 (752)
.|.++.....
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999876543
No 96
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.48 E-value=3.8e-13 Score=140.35 Aligned_cols=78 Identities=12% Similarity=0.209 Sum_probs=71.6
Q ss_pred CCCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEE
Q 004460 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELML 128 (752)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~-Gr~L~V 128 (752)
...+.++|||+|||..+++++|+.+|+.||.|..+.++.+. +|||||+|.+.++|..|+..|||..|+ |+.|.|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 34567899999999999999999999999999999998652 589999999999999999999999999 999999
Q ss_pred Eeec
Q 004460 129 KVDQ 132 (752)
Q Consensus 129 ~~a~ 132 (752)
.|+.
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9874
No 97
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.48 E-value=3.2e-14 Score=121.71 Aligned_cols=73 Identities=15% Similarity=0.324 Sum_probs=67.9
Q ss_pred CCEEEEccCCCCC------CHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCe-EE
Q 004460 54 QTKVYVGKIAPTA------DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-EL 126 (752)
Q Consensus 54 ~~tVfVgNLp~~v------te~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr-~L 126 (752)
.++|||||||..+ +.++|+.+|+.||.|..+.++ +.+|.++|||||+|.+.++|..|+..|||..|+|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4789999999999 679999999999999999987 36899999999999999999999999999999999 88
Q ss_pred EE
Q 004460 127 ML 128 (752)
Q Consensus 127 ~V 128 (752)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 98
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.48 E-value=1.4e-13 Score=125.25 Aligned_cols=80 Identities=14% Similarity=0.269 Sum_probs=74.1
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
+.++|||+|||+.+++.+|..+|+.||.|..+.++.+ +.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 4789999999999999999999999999999999864 5669999999999999999999999999999999999987
Q ss_pred chH
Q 004460 133 ATR 135 (752)
Q Consensus 133 s~k 135 (752)
...
T Consensus 84 ~~~ 86 (115)
T 3lqv_A 84 ANR 86 (115)
T ss_dssp HHH
T ss_pred CCh
Confidence 643
No 99
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=5.3e-14 Score=127.86 Aligned_cols=82 Identities=20% Similarity=0.322 Sum_probs=71.1
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||+.+++++|..+|+.||.|..+.+..+..+|.++|||||+|.+.++|..||..||+..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 35789999999999999999999999999843322222237899999999999999999999999999999999999988
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 103 ~~ 104 (115)
T 2cpx_A 103 KN 104 (115)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 100
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.47 E-value=2.8e-13 Score=133.79 Aligned_cols=84 Identities=15% Similarity=0.221 Sum_probs=78.7
Q ss_pred CCCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
...+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|..||..||+..|+|+.|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34557899999999999999999999999999999999996 99999999999999999999999999999999999999
Q ss_pred eecch
Q 004460 130 VDQAT 134 (752)
Q Consensus 130 ~a~s~ 134 (752)
|+...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 98653
No 101
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.47 E-value=1.9e-13 Score=120.09 Aligned_cols=73 Identities=12% Similarity=0.237 Sum_probs=69.4
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.-||||||++.++++.|+.+|.+||+|.++.++. ++|||||+|.+.++|..|+..||+..|+|++|.|+++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 477899999999999999999999999999999865 6799999999999999999999999999999999988
No 102
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.47 E-value=3.7e-14 Score=126.11 Aligned_cols=75 Identities=20% Similarity=0.348 Sum_probs=69.8
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
..++|||||||.++++++|+.+|+.||.|..+.++ .++|||||+|.+.++|..|+..|||..|+|+.|.|.|+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 46899999999999999999999999999999987 356999999999999999999999999999999998875
Q ss_pred c
Q 004460 133 A 133 (752)
Q Consensus 133 s 133 (752)
.
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 103
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.2e-13 Score=129.31 Aligned_cols=89 Identities=12% Similarity=0.222 Sum_probs=77.3
Q ss_pred CEEEEccC----CCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCC----HHH----HHHHHH--HhCCce
Q 004460 55 TKVYVGKI----APTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES----AEG----VLRALR--LLNKFN 120 (752)
Q Consensus 55 ~tVfVgNL----p~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~----~es----A~~Al~--~Lng~~ 120 (752)
+.|||||| |+.+++..|+.+|+.||.|.+|.++.|+.||.++|||||+|.+ +.. |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 433 788887 789999
Q ss_pred eCCeEEEEEeecch--HHHHHHHHH
Q 004460 121 IDGQELMLKVDQAT--REYLERYVD 143 (752)
Q Consensus 121 I~Gr~L~V~~a~s~--kk~le~~k~ 143 (752)
|+|++|.|.++... .++++....
T Consensus 83 I~Gr~irV~ln~~g~~~~~~~~~i~ 107 (136)
T 2j8a_A 83 IMGFKFEVILNKHSILNNIISKFVE 107 (136)
T ss_dssp ETTEEEEEEECCTTHHHHHHHHHHH
T ss_pred ecCcEEEEEECcccHHHHHHHHHHH
Confidence 99999999998755 345555544
No 104
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.47 E-value=3.6e-14 Score=119.02 Aligned_cols=75 Identities=21% Similarity=0.345 Sum_probs=71.5
Q ss_pred EEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 56 tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
+|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+. +++..|+|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999998899999999999999999999999 5999999999999874
No 105
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.46 E-value=2.5e-13 Score=120.71 Aligned_cols=74 Identities=16% Similarity=0.390 Sum_probs=69.1
Q ss_pred CCCCEEEEccCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 52 KPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 52 ~~~~tVfVgNLp~-~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
.+.++|||||||+ ++++++|+.+|+.||.|..+.+. +|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3578999999998 99999999999999999999883 58999999999999999999999999999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 92 a~~ 94 (97)
T 2xnq_A 92 SSS 94 (97)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 106
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.46 E-value=5.1e-14 Score=132.97 Aligned_cols=83 Identities=18% Similarity=0.270 Sum_probs=78.5
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
..+.++|||+|||..+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..||+..|+|+.|.|.|
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 124 a~~ 126 (135)
T 2lea_A 124 ARY 126 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 107
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.6e-13 Score=123.20 Aligned_cols=79 Identities=15% Similarity=0.111 Sum_probs=73.3
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeE-EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~-~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
...++|||+|||+.+++++|+.+|+.||.|.. |.|+.+ .+|.++|||||+|.+.++|..||.. |+..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 45789999999999999999999999999987 888888 7999999999999999999999996 99999999999976
Q ss_pred ec
Q 004460 131 DQ 132 (752)
Q Consensus 131 a~ 132 (752)
+.
T Consensus 91 ~~ 92 (104)
T 1wg5_A 91 SS 92 (104)
T ss_dssp EC
T ss_pred CC
Confidence 64
No 108
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=9.8e-14 Score=126.14 Aligned_cols=81 Identities=19% Similarity=0.284 Sum_probs=74.5
Q ss_pred CCCEEEEccCCCCCCHHHHH---HHHhhcCCeeEEEEeecCCCC---CCccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 004460 53 PQTKVYVGKIAPTADSDFVL---SVLKVCGTVKSWKRAQYPSNG---TPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~---~lFs~~G~I~~~ki~~d~~tG---k~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L 126 (752)
..++|||+|||+.+++++|. .+|+.||.|..+.++.+..+| .++|||||+|.+.++|..||..|||..|+|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 46899999999999999999 999999999999999886544 566999999999999999999999999999999
Q ss_pred EEEeecc
Q 004460 127 MLKVDQA 133 (752)
Q Consensus 127 ~V~~a~s 133 (752)
.|.++..
T Consensus 94 ~V~~a~~ 100 (111)
T 2cpi_A 94 KASLGTT 100 (111)
T ss_dssp EEESCCC
T ss_pred EEEeccc
Confidence 9998764
No 109
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.4e-13 Score=125.17 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=69.9
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEE
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELML 128 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Ln--g~~I~Gr~L~V 128 (752)
+.+.++|||+|||+.+++++|+.+|+.||.|..+.++.+ +|||||+|.+.++|..|+..|+ +..|+|+.|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345789999999999999999999999999999999865 6999999999999999999886 47899999999
Q ss_pred Eeecc
Q 004460 129 KVDQA 133 (752)
Q Consensus 129 ~~a~s 133 (752)
.|+..
T Consensus 87 ~~A~~ 91 (105)
T 1sjq_A 87 QFSNH 91 (105)
T ss_dssp CCCSS
T ss_pred EEcCC
Confidence 88764
No 110
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.45 E-value=2.6e-13 Score=136.71 Aligned_cols=82 Identities=20% Similarity=0.349 Sum_probs=77.5
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
+.+||||||||+++++++|+.+|+.||.|.+|.|+.++.+|.++|||||+|.+.++|..||..||+..+.|+.|.|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred ch
Q 004460 133 AT 134 (752)
Q Consensus 133 s~ 134 (752)
..
T Consensus 94 ~~ 95 (213)
T 4f02_A 94 RD 95 (213)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 111
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.45 E-value=1.8e-13 Score=124.27 Aligned_cols=76 Identities=22% Similarity=0.327 Sum_probs=70.8
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
..+.++|||||||.++++++|+.+|+.||.|..+.++ +|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4457999999999999999999999999999999987 58999999999999999999999999999999998
Q ss_pred ecch
Q 004460 131 DQAT 134 (752)
Q Consensus 131 a~s~ 134 (752)
+...
T Consensus 100 a~~~ 103 (108)
T 2jvo_A 100 SKLP 103 (108)
T ss_dssp CSCC
T ss_pred ecCC
Confidence 8653
No 112
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=3.1e-13 Score=120.10 Aligned_cols=79 Identities=25% Similarity=0.391 Sum_probs=72.5
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
..+.++|||+|||+.+++++|+.+|+.||.| .++.+ .+|.++|||||+|.+.++|..||..||+..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3458999999999999999999999999977 56666 6899999999999999999999999999999999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 88 a~~ 90 (101)
T 2fc9_A 88 QGP 90 (101)
T ss_dssp CSS
T ss_pred cCC
Confidence 864
No 113
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=5.3e-13 Score=120.59 Aligned_cols=74 Identities=22% Similarity=0.277 Sum_probs=70.1
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC-----eEEE
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-----QELM 127 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~G-----r~L~ 127 (752)
..++|||+|||+++++++|+.+|+.||.|..|.|+.+ |||||+|.+.++|..||..||+..|+| +.|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 4789999999999999999999999999999999876 899999999999999999999999999 9999
Q ss_pred EEeecc
Q 004460 128 LKVDQA 133 (752)
Q Consensus 128 V~~a~s 133 (752)
|.++..
T Consensus 87 V~~a~~ 92 (108)
T 1x4c_A 87 VKVDGP 92 (108)
T ss_dssp EEESSC
T ss_pred EEeCCC
Confidence 998765
No 114
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=4.6e-13 Score=120.62 Aligned_cols=77 Identities=13% Similarity=0.167 Sum_probs=69.7
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh--CCceeCCeEEEE
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL--NKFNIDGQELML 128 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~L--ng~~I~Gr~L~V 128 (752)
..+.++|||+|||+.+++++|+.+|+.||.|..+.++.+ +|||||+|.+.++|..|+..| ++..|+|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 345789999999999999999999999999999988754 699999999999999999876 578899999999
Q ss_pred Eeecc
Q 004460 129 KVDQA 133 (752)
Q Consensus 129 ~~a~s 133 (752)
.|+..
T Consensus 86 ~~a~~ 90 (101)
T 2cq1_A 86 QYSNH 90 (101)
T ss_dssp EECSC
T ss_pred EEcCc
Confidence 99864
No 115
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.44 E-value=8.2e-14 Score=125.82 Aligned_cols=81 Identities=14% Similarity=0.121 Sum_probs=75.1
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCC---eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGT---VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~---I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~ 127 (752)
....++|||+|||+.+++++|+.+|+.||. |..|.++.++. |.++|||||+|.+.++|..||. ||+..|+|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 345889999999999999999999999998 89999999965 9999999999999999999999 999999999999
Q ss_pred EEeecc
Q 004460 128 LKVDQA 133 (752)
Q Consensus 128 V~~a~s 133 (752)
|.++..
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 987754
No 116
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=3.7e-13 Score=119.70 Aligned_cols=79 Identities=20% Similarity=0.359 Sum_probs=72.6
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||+.+++++|+.+|+.|+ .+.++.++.+|.++|||||+|.+.++|..||..||+..|+|+.|.|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 3578999999999999999999999874 6777788789999999999999999999999999999999999999988
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 90 ~~ 91 (102)
T 2fc8_A 90 KP 91 (102)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 117
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.43 E-value=2.2e-13 Score=129.30 Aligned_cols=80 Identities=15% Similarity=0.124 Sum_probs=74.9
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCC---eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGT---VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~---I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~ 127 (752)
....++|||+|||+++++++|+.+|+.||. |..|.++.++. |+++|||||+|.+.++|..||. ||+..|+|+.|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 445789999999999999999999999999 88999999965 9999999999999999999999 999999999999
Q ss_pred EEeec
Q 004460 128 LKVDQ 132 (752)
Q Consensus 128 V~~a~ 132 (752)
|.++.
T Consensus 119 V~~a~ 123 (136)
T 2hgl_A 119 VFKSH 123 (136)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 98764
No 118
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=5e-13 Score=114.71 Aligned_cols=75 Identities=21% Similarity=0.301 Sum_probs=69.7
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEE
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMLK 129 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~L-ng~~I~Gr~L~V~ 129 (752)
..+.++|||+|||..+++++|+.+|+.||.|..+.++.+ +|||||+|.+.++|..|+..| |+..|+|+.|.|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 345789999999999999999999999999999999864 689999999999999999988 9999999999998
Q ss_pred ee
Q 004460 130 VD 131 (752)
Q Consensus 130 ~a 131 (752)
|+
T Consensus 83 ~a 84 (85)
T 2ytc_A 83 WG 84 (85)
T ss_dssp EC
T ss_pred ec
Confidence 86
No 119
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.8e-13 Score=123.07 Aligned_cols=78 Identities=15% Similarity=0.134 Sum_probs=71.9
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
...++|||+|||+.+++++|+.+|+.|| +..|.|+.++ +|+++|||||+|.+.++|.+||. +|+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 3468999999999999999999999999 4599999996 99999999999999999999996 8999999999999766
Q ss_pred c
Q 004460 132 Q 132 (752)
Q Consensus 132 ~ 132 (752)
.
T Consensus 90 ~ 90 (102)
T 1wez_A 90 S 90 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 120
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=5.3e-13 Score=117.99 Aligned_cols=77 Identities=17% Similarity=0.285 Sum_probs=69.9
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
...++|||+|||+.+++++|+.+|+.||.|. +.++. +.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3478999999999999999999999999996 66654 468899999999999999999999999999999999988
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 92 ~~ 93 (97)
T 2e5j_A 92 RQ 93 (97)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 121
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=3.8e-13 Score=122.80 Aligned_cols=78 Identities=17% Similarity=0.110 Sum_probs=72.1
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
..++|||+|||+.+++++|+.+|+.| .|..|.|+.++ +|.++|||||+|.+.++|.+|| .||+..|+|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 36799999999999999999999999 89999999995 5999999999999999999999 599999999999997664
Q ss_pred c
Q 004460 133 A 133 (752)
Q Consensus 133 s 133 (752)
.
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 122
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=7.1e-13 Score=117.05 Aligned_cols=76 Identities=16% Similarity=0.395 Sum_probs=70.3
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEE
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID--GQELMLK 129 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~--Gr~L~V~ 129 (752)
.+.++|||+|||..+++++|+.+|+.||.|..+.+..+ +|||||+|.+.++|..|+..||+..|+ |+.|.|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 34689999999999999999999999999999988754 689999999999999999999999999 9999999
Q ss_pred eecc
Q 004460 130 VDQA 133 (752)
Q Consensus 130 ~a~s 133 (752)
|+..
T Consensus 89 ~a~~ 92 (97)
T 1why_A 89 FAKS 92 (97)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9864
No 123
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.43 E-value=4.9e-13 Score=120.48 Aligned_cols=77 Identities=14% Similarity=0.155 Sum_probs=70.0
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce--eCCeEEEE
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN--IDGQELML 128 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~--I~Gr~L~V 128 (752)
..++++|||+|||+.+++++|..+|++||.|.++.++. .+|||||+|.+.++|..|+..|++.. |+|++|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 34688999999999999999999999999999999875 35899999999999999999998875 88999999
Q ss_pred Eeecc
Q 004460 129 KVDQA 133 (752)
Q Consensus 129 ~~a~s 133 (752)
.|+..
T Consensus 92 ~~S~~ 96 (100)
T 3r27_A 92 NYSTS 96 (100)
T ss_dssp EECSC
T ss_pred Eeccc
Confidence 99865
No 124
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=5e-13 Score=116.40 Aligned_cols=74 Identities=19% Similarity=0.399 Sum_probs=69.5
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||.++++++|+.+|+.||.|..+.++ +|||||+|.+.++|..|+..||+..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 457899999999999999999999999999999987 479999999999999999999999999999999987
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 78 ~~ 79 (90)
T 2dnq_A 78 KN 79 (90)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 125
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.42 E-value=7.9e-14 Score=132.00 Aligned_cols=83 Identities=16% Similarity=0.262 Sum_probs=72.8
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEE------EEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW------KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ 124 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~------ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr 124 (752)
..+.++|||+|||+.+++++|..+|+.||.|..+ .+.. ..+|.++|||||+|.+.++|..||..|||..|+|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 3457899999999999999999999999998774 1111 24799999999999999999999999999999999
Q ss_pred EEEEEeecch
Q 004460 125 ELMLKVDQAT 134 (752)
Q Consensus 125 ~L~V~~a~s~ 134 (752)
.|.|.++...
T Consensus 121 ~l~V~~a~~~ 130 (143)
T 3egn_A 121 PMVVQFARSA 130 (143)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998653
No 126
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=5.5e-13 Score=120.43 Aligned_cols=77 Identities=19% Similarity=0.311 Sum_probs=71.7
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
....++|||+|||..+++++|+.+|+.||.|..|.++.+ +|||||+|.+.++|..|+..|||..|+|+.|.|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 345789999999999999999999999999999999875 68999999999999999999999999999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 96 a~~ 98 (109)
T 1x4g_A 96 GKE 98 (109)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 127
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.42 E-value=1.9e-13 Score=120.28 Aligned_cols=78 Identities=17% Similarity=0.249 Sum_probs=71.2
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
..+.++|||+|||+.+++++|+.+|+.||.|..+ ..+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4457899999999999999999999999988766 25789999999999999999999999999999999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 88 a~~ 90 (96)
T 1fjc_A 88 TGE 90 (96)
T ss_dssp CSS
T ss_pred cCC
Confidence 754
No 128
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.42 E-value=1.5e-13 Score=122.34 Aligned_cols=79 Identities=27% Similarity=0.391 Sum_probs=74.7
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
..++|||+|||+.+++++|..+|+.||.|..+.++.++ +|.++|||||+|.+.++|..|+. ++..|+|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 46899999999999999999999999999999999997 99999999999999999999999 9999999999998886
Q ss_pred ch
Q 004460 133 AT 134 (752)
Q Consensus 133 s~ 134 (752)
..
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 53
No 129
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1e-12 Score=114.95 Aligned_cols=75 Identities=24% Similarity=0.426 Sum_probs=69.7
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
..+.++|||+|||+.+++++|+.+|+.||.|..+.++. +||||+|.+.++|..|+..||+..|+|+.|.|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 34578999999999999999999999999999999874 3999999999999999999999999999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 79 a~~ 81 (92)
T 2dgt_A 79 STS 81 (92)
T ss_dssp SSC
T ss_pred ccC
Confidence 864
No 130
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.41 E-value=9.6e-13 Score=125.01 Aligned_cols=82 Identities=17% Similarity=0.319 Sum_probs=78.0
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
..+.++|||+|||..++.++|..+|+.||.|..+.++.++.+|.++|||||.|.+.++|..|+..|||..|+|+.|.|.|
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred ec
Q 004460 131 DQ 132 (752)
Q Consensus 131 a~ 132 (752)
+.
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 74
No 131
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.41 E-value=5.2e-13 Score=122.41 Aligned_cols=77 Identities=16% Similarity=0.172 Sum_probs=70.9
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G-~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
..++|||+|||+++++++|+.+|+.|| .|..+.+.. +.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 468999999999999999999999999 899998753 358899999999999999999999999999999999987
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 103 ~~ 104 (111)
T 2jvr_A 103 DN 104 (111)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 132
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=2.7e-13 Score=122.57 Aligned_cols=76 Identities=12% Similarity=0.114 Sum_probs=69.4
Q ss_pred CCCCEEEEccCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEE
Q 004460 52 KPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK--FNIDGQELML 128 (752)
Q Consensus 52 ~~~~tVfVgNLp~-~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng--~~I~Gr~L~V 128 (752)
.+.++|||+|||+ .+++++|+.+|+.||.|.++.++.+ +|||||+|.+.++|..||..||+ ..|+|++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3578999999999 9999999999999999999999865 38999999999999999998885 4699999999
Q ss_pred Eeecc
Q 004460 129 KVDQA 133 (752)
Q Consensus 129 ~~a~s 133 (752)
.++..
T Consensus 87 ~~a~~ 91 (102)
T 1x4d_A 87 HLSQK 91 (102)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 99874
No 133
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.40 E-value=9.7e-13 Score=125.10 Aligned_cols=80 Identities=16% Similarity=0.320 Sum_probs=76.9
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeecc
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~s 133 (752)
.++|||+|||+.+++++|..+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..++|+.|.|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 68999999999999999999999999999999999988999999999999999999999999999999999999998764
No 134
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=6.2e-13 Score=123.47 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=69.7
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEE
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMLK 129 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Ln--g~~I~Gr~L~V~ 129 (752)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.+ +|||||+|.+.++|..|+..|+ +..|+|+.|.|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 45789999999999999999999999999999999875 6999999999999999999887 468999999999
Q ss_pred eecc
Q 004460 130 VDQA 133 (752)
Q Consensus 130 ~a~s 133 (752)
|+..
T Consensus 103 ~a~~ 106 (119)
T 2ad9_A 103 FSNH 106 (119)
T ss_dssp ECSS
T ss_pred EccC
Confidence 8864
No 135
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.39 E-value=8.3e-13 Score=125.96 Aligned_cols=78 Identities=24% Similarity=0.382 Sum_probs=72.7
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
..+.++|||||||+.+++++|+.+|+.||.|..+.++.+ ++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345789999999999999999999999999999999875 579999999999999999999999999999999999
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 145 a~~ 147 (150)
T 2i2y_A 145 SNG 147 (150)
T ss_dssp CCC
T ss_pred cCC
Confidence 865
No 136
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=3.8e-13 Score=122.53 Aligned_cols=76 Identities=12% Similarity=0.073 Sum_probs=70.3
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
...++|||+|||+.+++++|+.+|+.||.|..|.++. ++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3468999999999999999999999999999998864 5689999999999999999999999999999999998
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 82 ~~ 83 (111)
T 1whx_A 82 PI 83 (111)
T ss_dssp ET
T ss_pred CC
Confidence 64
No 137
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.39 E-value=4.2e-13 Score=119.24 Aligned_cols=74 Identities=27% Similarity=0.408 Sum_probs=70.2
Q ss_pred CEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeecc
Q 004460 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (752)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~s 133 (752)
++|||+|||+++++++|+.+|+.||.|..+.++.+ ++|||||+|.+.++|..|+..||+..|+|+.|.|.++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 58999999999999999999999999999999875 789999999999999999999999999999999998865
No 138
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.09 E-value=2.9e-14 Score=130.29 Aligned_cols=82 Identities=13% Similarity=0.220 Sum_probs=77.3
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeE--------EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 123 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~--------~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~G 123 (752)
.+.++|||+|||..+++++|+.+|+.||.|.. +.++.++.+|.++|||||+|.+.++|..||..||+..|+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45789999999999999999999999999998 8899988899999999999999999999999999999999
Q ss_pred eEEEEEeecc
Q 004460 124 QELMLKVDQA 133 (752)
Q Consensus 124 r~L~V~~a~s 133 (752)
+.|.|.++..
T Consensus 85 ~~l~V~~a~~ 94 (116)
T 2lcw_A 85 NPIKVSFATR 94 (116)
Confidence 9999988764
No 139
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.39 E-value=9.8e-13 Score=125.62 Aligned_cols=81 Identities=16% Similarity=0.343 Sum_probs=77.4
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
+.++|||+|||.++++++|..+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 47899999999999999999999999999999999998899999999999999999999999999999999999999876
Q ss_pred c
Q 004460 133 A 133 (752)
Q Consensus 133 s 133 (752)
.
T Consensus 82 ~ 82 (168)
T 1b7f_A 82 P 82 (168)
T ss_dssp C
T ss_pred C
Confidence 4
No 140
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.39 E-value=2.2e-12 Score=116.61 Aligned_cols=73 Identities=18% Similarity=0.309 Sum_probs=68.4
Q ss_pred CCCEEEEccCCCC-CCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 53 PQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 53 ~~~tVfVgNLp~~-vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
..++|||+|||+. +++++|+.+|+.||.|..|.+ ++|||||+|.+.++|..||..||+..|+|+.|.|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4689999999999 999999999999999999988 4689999999999999999999999999999999987
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 98 ~~ 99 (110)
T 1wf1_A 98 GE 99 (110)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 141
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1e-12 Score=115.50 Aligned_cols=78 Identities=19% Similarity=0.215 Sum_probs=70.4
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEE-EEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~-ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
...++|||+|||+.+++++|+.+|+.||.|..+ .++.++.+|. |||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346899999999999999999999999999999 5877754443 99999999999999999999999999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 89 a~~ 91 (96)
T 2e44_A 89 IPD 91 (96)
T ss_dssp CCC
T ss_pred cCc
Confidence 764
No 142
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.4e-12 Score=113.48 Aligned_cols=74 Identities=18% Similarity=0.325 Sum_probs=69.1
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++. +||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 4578999999999999999999999999999999874 39999999999999999999999999999999987
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 79 ~~ 80 (90)
T 2dnp_A 79 TK 80 (90)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 143
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=1.1e-12 Score=116.21 Aligned_cols=76 Identities=18% Similarity=0.333 Sum_probs=70.7
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.+ +|||||+|.+.++|..|+..||+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 45789999999999999999999999999999998754 689999999999999999999999999999999987
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 87 ~~ 88 (99)
T 2cpj_A 87 CH 88 (99)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 144
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.38 E-value=1.4e-12 Score=125.15 Aligned_cols=79 Identities=22% Similarity=0.447 Sum_probs=76.1
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
..++|||+|||..+++++|+.+|+.||.|..+.++.++.+|.++|||||.|.+.++|.+|+..|||..|+|+.|.|.|+
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 4789999999999999999999999999999999999889999999999999999999999999999999999999886
No 145
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=1.2e-12 Score=118.48 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=68.5
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEEE
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK--FNIDGQELMLK 129 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng--~~I~Gr~L~V~ 129 (752)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.+ +|||||+|.+.++|..|+..|++ ..|+|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45789999999999999999999999999999988753 69999999999999999998865 46999999999
Q ss_pred eecc
Q 004460 130 VDQA 133 (752)
Q Consensus 130 ~a~s 133 (752)
|+..
T Consensus 87 ~a~~ 90 (104)
T 1wex_A 87 YSTS 90 (104)
T ss_dssp ECSS
T ss_pred EccC
Confidence 8864
No 146
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=1.7e-12 Score=119.28 Aligned_cols=77 Identities=13% Similarity=0.218 Sum_probs=69.1
Q ss_pred CCCCCEEEEccCCCC-CCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC--CceeCCeEEE
Q 004460 51 EKPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELM 127 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~-vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Ln--g~~I~Gr~L~ 127 (752)
..+.++|||+|||+. +++++|+.+|+.||.|..+.++. ++|||||+|.+.++|..|+..|| +..|+|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345889999999998 99999999999999999999864 36999999999999999999885 5679999999
Q ss_pred EEeecc
Q 004460 128 LKVDQA 133 (752)
Q Consensus 128 V~~a~s 133 (752)
|.++..
T Consensus 96 V~~a~~ 101 (112)
T 1x4f_A 96 VDLSEK 101 (112)
T ss_dssp EEEECS
T ss_pred EEECcc
Confidence 999864
No 147
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.37 E-value=2.3e-12 Score=115.10 Aligned_cols=74 Identities=15% Similarity=0.404 Sum_probs=69.1
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||+++++++|+.+|+.||.|..|.++. +||||+|.+.++|..||..||+..|+|+.|.|.|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 3478999999999999999999999999999998863 59999999999999999999999999999999988
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 81 ~~ 82 (103)
T 2dgu_A 81 KP 82 (103)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 148
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.37 E-value=1e-12 Score=116.12 Aligned_cols=75 Identities=17% Similarity=0.407 Sum_probs=68.9
Q ss_pred CCCCCEEEEccCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 51 EKPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 51 ~~~~~tVfVgNLp~-~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
..+.++|||+|||+ .+++++|..+|+.||.|..+.+. +|||||+|.+.++|..|+..|||..|+|+.|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34588999999999 99999999999999999999884 5899999999999999999999999999999999
Q ss_pred eecc
Q 004460 130 VDQA 133 (752)
Q Consensus 130 ~a~s 133 (752)
++..
T Consensus 79 ~a~~ 82 (96)
T 2kvi_A 79 VSSS 82 (96)
T ss_dssp EEEC
T ss_pred EcCc
Confidence 9864
No 149
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.36 E-value=1.7e-12 Score=127.30 Aligned_cols=82 Identities=20% Similarity=0.353 Sum_probs=76.9
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
....++|||+|||+++++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||. +++..|+|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeeec
Confidence 3457899999999999999999999999999999999998899999999999999999999998 499999999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 89 ~~~ 91 (196)
T 1l3k_A 89 AVS 91 (196)
T ss_dssp CCC
T ss_pred ccC
Confidence 765
No 150
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.36 E-value=4e-12 Score=124.83 Aligned_cols=82 Identities=21% Similarity=0.443 Sum_probs=78.3
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||+.++.++|..+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 46799999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 192 ~~ 193 (198)
T 2yh0_A 192 SV 193 (198)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 151
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=5.2e-12 Score=111.85 Aligned_cols=74 Identities=18% Similarity=0.388 Sum_probs=68.5
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhc--CCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVC--GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~--G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
.+.++|||+|||+.+++++|+.+|+.| |.|..+.+. +|||||+|.+.++|..||..||+..|+|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 457899999999999999999999999 999998765 4699999999999999999999999999999999
Q ss_pred eecc
Q 004460 130 VDQA 133 (752)
Q Consensus 130 ~a~s 133 (752)
++..
T Consensus 85 ~a~~ 88 (99)
T 2cpd_A 85 LAKP 88 (99)
T ss_dssp CCCC
T ss_pred ECCC
Confidence 8764
No 152
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.9e-12 Score=113.82 Aligned_cols=74 Identities=18% Similarity=0.240 Sum_probs=67.1
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
..++|||+|||+.+++++|+.+|+.||.|..| +.++.+|. ||||+|.+.++|..||. ||+..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 46799999999999999999999999999987 55555666 99999999999999999 99999999999997654
No 153
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.34 E-value=2.7e-12 Score=127.76 Aligned_cols=82 Identities=29% Similarity=0.497 Sum_probs=78.0
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
...++|||+|||..+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 203 ~~ 204 (216)
T 2qfj_A 203 VT 204 (216)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 154
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.33 E-value=1.4e-12 Score=122.32 Aligned_cols=78 Identities=15% Similarity=0.115 Sum_probs=70.8
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCee--EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVK--SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~--~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
...++|||+|||+.+++++|+.+|+.| .|. .|.|+.++. |.++|||||+|.+.++|.+||. +++..|+|+.|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEE
Confidence 347899999999999999999999999 576 899999965 9999999999999999999998 57899999999987
Q ss_pred eec
Q 004460 130 VDQ 132 (752)
Q Consensus 130 ~a~ 132 (752)
.+.
T Consensus 117 ~a~ 119 (126)
T 2hgm_A 117 KSS 119 (126)
T ss_dssp EEC
T ss_pred ECC
Confidence 664
No 155
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=2.6e-12 Score=112.42 Aligned_cols=75 Identities=15% Similarity=0.332 Sum_probs=67.1
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCC-eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCC-ceeCCeEEEEE
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK-FNIDGQELMLK 129 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~-I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng-~~I~Gr~L~V~ 129 (752)
.+.++|||+|||+++++++|+.+|+.||. |..+.+. ++|||||+|.+.++|..|+..||| ..|+|+.|.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 34789999999999999999999999999 5555552 368999999999999999999999 99999999999
Q ss_pred eecc
Q 004460 130 VDQA 133 (752)
Q Consensus 130 ~a~s 133 (752)
++..
T Consensus 79 ~a~~ 82 (93)
T 2cqh_A 79 YSVS 82 (93)
T ss_dssp ECCC
T ss_pred EccC
Confidence 8864
No 156
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=7.4e-12 Score=110.61 Aligned_cols=74 Identities=15% Similarity=0.284 Sum_probs=67.8
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|| .+++++|+.+|+.||.|..|.+. .++|||||+|.+.++|..||..||+..|+|+.|.|.|+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 35789999996 89999999999999999999884 46789999999999999999999999999999999987
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 85 ~~ 86 (97)
T 1x5p_A 85 RK 86 (97)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 157
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=1.4e-12 Score=121.66 Aligned_cols=79 Identities=22% Similarity=0.212 Sum_probs=71.8
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCe----eEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTV----KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I----~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~ 127 (752)
...++|||+|||+.+++++|+.+|+.||.| ..|.|+.+ .+|+++|||||+|.+.++|..||.. |+..|+|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 457899999999999999999999999975 68999998 5999999999999999999999994 99999999988
Q ss_pred EEeec
Q 004460 128 LKVDQ 132 (752)
Q Consensus 128 V~~a~ 132 (752)
|..+.
T Consensus 99 V~~a~ 103 (123)
T 2dha_A 99 LFRST 103 (123)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 87653
No 158
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.33 E-value=2.6e-12 Score=111.64 Aligned_cols=75 Identities=15% Similarity=0.298 Sum_probs=69.3
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
...++|||+|||+.+++++|+.+|+.| .|..+.+. .++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 347899999999999999999999999 99999884 57899999999999999999999999999999999987
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 76 ~~ 77 (88)
T 1wg1_A 76 PT 77 (88)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 159
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=2.1e-12 Score=117.83 Aligned_cols=77 Identities=21% Similarity=0.333 Sum_probs=68.4
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC---CCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN---GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~t---Gk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (752)
...++|||||||+.+++++|+.+|+.||.|. +.++.+..+ |.++|||||+|.+.++|..||..|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4578999999999999999999999999999 888887666 8999999999999999999999885 478888887
Q ss_pred Eee
Q 004460 129 KVD 131 (752)
Q Consensus 129 ~~a 131 (752)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 160
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.32 E-value=1.9e-12 Score=123.63 Aligned_cols=80 Identities=21% Similarity=0.382 Sum_probs=76.1
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
+.++|||+|||+.++.++|..+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+. +|+..|+|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 46799999999999999999999999999999999998899999999999999999999999 89999999999999986
Q ss_pred c
Q 004460 133 A 133 (752)
Q Consensus 133 s 133 (752)
.
T Consensus 165 p 165 (167)
T 2cjk_A 165 P 165 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 161
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.32 E-value=5.7e-12 Score=126.91 Aligned_cols=80 Identities=18% Similarity=0.360 Sum_probs=74.6
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
..++|||+|||+.+++++|+.+|+.||.|..+.|+.+ .+.++|||||+|.+.++|.+||..|||..|+|+.|.|.++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d--~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE--TTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeecc--CCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 4579999999999999999999999999999999988 35589999999999999999999999999999999999987
Q ss_pred ch
Q 004460 133 AT 134 (752)
Q Consensus 133 s~ 134 (752)
..
T Consensus 180 ~~ 181 (213)
T 4f02_A 180 SR 181 (213)
T ss_dssp CH
T ss_pred CC
Confidence 63
No 162
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.32 E-value=5.2e-12 Score=123.81 Aligned_cols=82 Identities=15% Similarity=0.331 Sum_probs=75.5
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||.|.+.++|.+||.. ++..|+|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 3468999999999999999999999999999999999988999999999999999999999984 899999999999998
Q ss_pred cch
Q 004460 132 QAT 134 (752)
Q Consensus 132 ~s~ 134 (752)
...
T Consensus 181 ~~k 183 (196)
T 1l3k_A 181 LSK 183 (196)
T ss_dssp C--
T ss_pred CCh
Confidence 764
No 163
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.31 E-value=2.3e-12 Score=118.01 Aligned_cols=66 Identities=21% Similarity=0.281 Sum_probs=61.8
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 125 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~ 125 (752)
..++|||+|||+++++++|+.+|+.||.|..|.|+.+ |||||+|.+.++|..||..||+..|+|+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 4689999999999999999999999999999999765 89999999999999999999999999988
No 164
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.31 E-value=6.9e-12 Score=119.68 Aligned_cols=80 Identities=21% Similarity=0.366 Sum_probs=75.7
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEE
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLK 129 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~G--r~L~V~ 129 (752)
.+.++|||+|||..+++++|+.+|+.||.|..+.++.+..+|.++|||||+|.+.++|..|+..|||..|+| ++|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 457899999999999999999999999999999999997799999999999999999999999999999988 999998
Q ss_pred ee
Q 004460 130 VD 131 (752)
Q Consensus 130 ~a 131 (752)
|+
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 165
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.31 E-value=5.7e-12 Score=110.30 Aligned_cols=74 Identities=16% Similarity=0.220 Sum_probs=62.0
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce--eCCeEEEEE
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN--IDGQELMLK 129 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~--I~Gr~L~V~ 129 (752)
.+.++|||||||+++++++|+.+|++||.|.+|.++.+ ++|||||+|.+.++|.. |++.. +.|+.|.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 45789999999999999999999999999999998864 78999999999999873 45554 559999998
Q ss_pred eecch
Q 004460 130 VDQAT 134 (752)
Q Consensus 130 ~a~s~ 134 (752)
++...
T Consensus 80 ~a~~k 84 (89)
T 3d2w_A 80 NAEPK 84 (89)
T ss_dssp ECC--
T ss_pred EcCCC
Confidence 87653
No 166
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.30 E-value=5.4e-12 Score=119.80 Aligned_cols=78 Identities=19% Similarity=0.290 Sum_probs=72.8
Q ss_pred CEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeecc
Q 004460 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (752)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~s 133 (752)
++|||+|||.++++++|..+|+.||.|.++.++.++ +|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 589999999999999999999999999999999984 688999999999999999999999999999999999988753
No 167
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.30 E-value=5.6e-12 Score=108.43 Aligned_cols=71 Identities=24% Similarity=0.418 Sum_probs=65.8
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhc----C-------CeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVC----G-------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 120 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~----G-------~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~ 120 (752)
.+.++|||+|||+++++++|+.+|+.| | .|..+.+..+ +|||||+|.+.++|..|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 357899999999999999999999999 8 8999988754 699999999999999999 899999
Q ss_pred eCCeEEEEE
Q 004460 121 IDGQELMLK 129 (752)
Q Consensus 121 I~Gr~L~V~ 129 (752)
|+|+.|.|.
T Consensus 77 ~~g~~l~V~ 85 (87)
T 2hzc_A 77 FQGQSLKIR 85 (87)
T ss_dssp ETTEECEEE
T ss_pred ECCeEEEEe
Confidence 999999986
No 168
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.30 E-value=8.9e-13 Score=125.58 Aligned_cols=79 Identities=14% Similarity=0.127 Sum_probs=72.1
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
...++|||+|||+++++++|+.+|+.|| |..|.|+.++ +|+++|||||+|.+.++|..|| .+|+..|+|+.|.|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 4578999999999999999999999999 7799999996 5999999999999999999999 69999999999999776
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 121 ~~ 122 (139)
T 2hgn_A 121 ST 122 (139)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 169
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.30 E-value=5.3e-12 Score=125.64 Aligned_cols=82 Identities=24% Similarity=0.336 Sum_probs=74.7
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
+.++|||+|||.++++++|+.+|+.||.|..+.++.++.+|.++|||||.|.+.++|..|+..||+..|+|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999998865
Q ss_pred ch
Q 004460 133 AT 134 (752)
Q Consensus 133 s~ 134 (752)
..
T Consensus 107 ~~ 108 (216)
T 2qfj_A 107 NI 108 (216)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 170
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.29 E-value=8.9e-12 Score=118.40 Aligned_cols=80 Identities=18% Similarity=0.276 Sum_probs=74.3
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeE--EEEE
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE--LMLK 129 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~--L~V~ 129 (752)
...++|||+|||..++.++|+.+|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|+..|||..|+|+. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 34689999999999999999999999999999999998889999999999999999999999999999999975 7777
Q ss_pred ee
Q 004460 130 VD 131 (752)
Q Consensus 130 ~a 131 (752)
|+
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 171
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=6.8e-12 Score=111.44 Aligned_cols=71 Identities=17% Similarity=0.289 Sum_probs=63.8
Q ss_pred CCE-EEEccCCCCCCHHH----HHHHHhhc-CCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004460 54 QTK-VYVGKIAPTADSDF----VLSVLKVC-GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (752)
Q Consensus 54 ~~t-VfVgNLp~~vte~~----L~~lFs~~-G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~ 127 (752)
..| |||+|||+.++.+. |..+|+.| |.|..+ +| |||||.|.+.++|.+|+..|||..|.|+.|.
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 445 99999999999887 56899999 599988 34 9999999999999999999999999999999
Q ss_pred EEeecch
Q 004460 128 LKVDQAT 134 (752)
Q Consensus 128 V~~a~s~ 134 (752)
|.++...
T Consensus 78 v~~A~~~ 84 (96)
T 2diu_A 78 VSFTPKN 84 (96)
T ss_dssp EESSCCS
T ss_pred EEecCCC
Confidence 9988754
No 172
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.28 E-value=8.1e-12 Score=119.81 Aligned_cols=79 Identities=14% Similarity=0.344 Sum_probs=73.6
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC---CeEEEEE
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELMLK 129 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~---Gr~L~V~ 129 (752)
..++|||+|||+.+++++|+.+|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|+..|||..+. |++|.|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 57899999999999999999999999999999999984 7999999999999999999999999998776 4999999
Q ss_pred eec
Q 004460 130 VDQ 132 (752)
Q Consensus 130 ~a~ 132 (752)
|++
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 173
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=9.7e-12 Score=114.57 Aligned_cols=76 Identities=22% Similarity=0.340 Sum_probs=68.2
Q ss_pred CCCCEEEE--ccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee-----CCe
Q 004460 52 KPQTKVYV--GKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI-----DGQ 124 (752)
Q Consensus 52 ~~~~tVfV--gNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I-----~Gr 124 (752)
.+.++||| |||++++++++|+.+|++||.|..+.++. .+|||||+|.+.++|..|+..|||..| .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 34788999 88999999999999999999999988753 268999999999999999999999998 688
Q ss_pred EEEEEeecc
Q 004460 125 ELMLKVDQA 133 (752)
Q Consensus 125 ~L~V~~a~s 133 (752)
.|.|.++..
T Consensus 97 ~l~v~~a~~ 105 (114)
T 2cq2_A 97 TLYLNFVEK 105 (114)
T ss_dssp ECEEEEESC
T ss_pred EEEEEeccc
Confidence 999988764
No 174
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.27 E-value=7.3e-12 Score=119.57 Aligned_cols=79 Identities=24% Similarity=0.408 Sum_probs=73.8
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
+.++|||+|||+++++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+. ++..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46899999999999999999999999999999999998899999999999999999999999 4678999999998876
Q ss_pred c
Q 004460 133 A 133 (752)
Q Consensus 133 s 133 (752)
.
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 5
No 175
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.27 E-value=1.3e-11 Score=120.63 Aligned_cols=78 Identities=14% Similarity=0.113 Sum_probs=70.2
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEE
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLK 129 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~G--r~L~V~ 129 (752)
....+|||+||++.++++.|+.+|+.||.|..+.+... .++|||||+|.+.++|..|+..|||..|.| +.|.|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 34678999999999999999999999999999998653 257899999999999999999999999965 999999
Q ss_pred eecc
Q 004460 130 VDQA 133 (752)
Q Consensus 130 ~a~s 133 (752)
|+..
T Consensus 120 ~Ak~ 123 (164)
T 1sjr_A 120 FSKL 123 (164)
T ss_dssp ECSS
T ss_pred EecC
Confidence 8864
No 176
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.26 E-value=1.2e-11 Score=124.66 Aligned_cols=76 Identities=22% Similarity=0.240 Sum_probs=70.9
Q ss_pred CCCEEEEccCC-CCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 53 PQTKVYVGKIA-PTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 53 ~~~tVfVgNLp-~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
++++|||+||| +.++++.|..+|+.||.|.+|+++.+ .+|||||+|.+.++|..||..|||..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999865 3799999999999999999999999999999999987
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 78 ~~ 79 (205)
T 3tyt_A 78 KQ 79 (205)
T ss_dssp SC
T ss_pred cC
Confidence 53
No 177
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.26 E-value=2.5e-11 Score=109.96 Aligned_cols=82 Identities=17% Similarity=0.083 Sum_probs=72.5
Q ss_pred CCCCEEEEccCCC-----CCCHHHHHHHHhhcCCeeEEEEeecCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 004460 52 KPQTKVYVGKIAP-----TADSDFVLSVLKVCGTVKSWKRAQYPS-NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 125 (752)
Q Consensus 52 ~~~~tVfVgNLp~-----~vte~~L~~lFs~~G~I~~~ki~~d~~-tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~ 125 (752)
.++++|+|.||.. ..+.++|+.+|++||.|.++.|+.++. +|.++|||||+|.+.++|.+|+..|||..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3578999999973 236789999999999999999998864 4689999999999999999999999999999999
Q ss_pred EEEEeecc
Q 004460 126 LMLKVDQA 133 (752)
Q Consensus 126 L~V~~a~s 133 (752)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 178
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.26 E-value=1.7e-11 Score=127.75 Aligned_cols=84 Identities=13% Similarity=0.305 Sum_probs=76.0
Q ss_pred CCCCCCEEEEccCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 004460 50 AEKPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 125 (752)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~----~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~ 125 (752)
...+.++|||+|||+.+++++|+ .+|+.||.|..|.++. +|+++|||||+|.+.++|..||..|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34568999999999999999966 8999999999998875 7899999999999999999999999999999999
Q ss_pred EEEEeecchHH
Q 004460 126 LMLKVDQATRE 136 (752)
Q Consensus 126 L~V~~a~s~kk 136 (752)
|.|.|+.....
T Consensus 82 l~v~~a~~~~~ 92 (282)
T 3pgw_A 82 MRIQYAKTDSD 92 (282)
T ss_pred EEEEEeccCcc
Confidence 99999865543
No 179
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.25 E-value=1.5e-11 Score=117.97 Aligned_cols=80 Identities=19% Similarity=0.274 Sum_probs=72.2
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCC--CCccEEEEEeCCHHHHHHHHHHhCCceeC---CeEEE
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNG--TPKGFGFCEFESAEGVLRALRLLNKFNID---GQELM 127 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tG--k~kGfgFVeF~~~esA~~Al~~Lng~~I~---Gr~L~ 127 (752)
+.++|||+|||+++++++|..+|+.||.|..+.++.++.+| .++|||||+|.+.++|..|+..||+..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 47899999999999999999999999999999999997776 89999999999999999999999998776 56677
Q ss_pred EEeec
Q 004460 128 LKVDQ 132 (752)
Q Consensus 128 V~~a~ 132 (752)
+.++.
T Consensus 82 ~~~~~ 86 (175)
T 3nmr_A 82 MKPAD 86 (175)
T ss_dssp EEECG
T ss_pred Ecccc
Confidence 76554
No 180
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.25 E-value=1.6e-11 Score=122.70 Aligned_cols=78 Identities=18% Similarity=0.173 Sum_probs=71.5
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
..++|||+|||+.++.++|+.+|+.||.|..+.++.+. +|.++|||||+|.+.++|..||..+ +..|+|+.|.|.+..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 35899999999999999999999999999999999984 6999999999999999999999855 459999999998754
No 181
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.24 E-value=2.3e-11 Score=114.55 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=69.5
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccE-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEE
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGF-GFCEFESAEGVLRALRLLNKFNIDG--QELML 128 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGf-gFVeF~~~esA~~Al~~Lng~~I~G--r~L~V 128 (752)
.....|||+||++.++++.|..+|+.||.|.++.++.. .+|| |||+|.+.++|..|+..|||..|.| ..|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 34668999999999999999999999999999988764 2578 9999999999999999999999988 88999
Q ss_pred Eeecc
Q 004460 129 KVDQA 133 (752)
Q Consensus 129 ~~a~s 133 (752)
.|+..
T Consensus 101 ~~ak~ 105 (130)
T 3zzy_A 101 DFSKL 105 (130)
T ss_dssp EECSC
T ss_pred EecCC
Confidence 98865
No 182
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.23 E-value=6.7e-11 Score=110.51 Aligned_cols=74 Identities=20% Similarity=0.177 Sum_probs=66.0
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccE-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEe
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGF-GFCEFESAEGVLRALRLLNKFNIDG--QELMLKV 130 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGf-gFVeF~~~esA~~Al~~Lng~~I~G--r~L~V~~ 130 (752)
...|||+||++.++++.|..+|+.||.|..+.++.. + || |||+|.+.++|..|+..|||..|.| +.|.|.+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~----Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--N----GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--S----SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--C----CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 456789999999999999999999999999998652 2 76 9999999999999999999999987 5899988
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 99 Ak~ 101 (124)
T 2e5i_A 99 ARP 101 (124)
T ss_dssp CSC
T ss_pred ecC
Confidence 764
No 183
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.23 E-value=1.8e-11 Score=113.40 Aligned_cols=74 Identities=15% Similarity=0.284 Sum_probs=68.0
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||||| ++++++|+.+|+.||.|..|.+. .++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45789999996 69999999999999999999885 46799999999999999999999999999999999998
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 109 ~~ 110 (121)
T 2bz2_A 109 RK 110 (121)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 184
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.20 E-value=3.4e-11 Score=116.14 Aligned_cols=77 Identities=17% Similarity=0.260 Sum_probs=71.1
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
.+.++|||+|||+.+++++|+.+|+.||.|..+ ..+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 457899999999999999999999999988766 368999999999999999999999999999999999999998
Q ss_pred cc
Q 004460 132 QA 133 (752)
Q Consensus 132 ~s 133 (752)
..
T Consensus 172 ~~ 173 (175)
T 1fje_B 172 GE 173 (175)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 185
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=1.3e-11 Score=106.90 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=63.4
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
+.++|||+|||+++++++|+.+|+.||.|..+.++.+ ++|||||+|.+.++|..|+. ..+.++|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 4789999999999999999999999999999998764 78999999999999975433 2455689999998765
Q ss_pred c
Q 004460 133 A 133 (752)
Q Consensus 133 s 133 (752)
.
T Consensus 77 ~ 77 (88)
T 1wf0_A 77 P 77 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 186
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.20 E-value=2.9e-11 Score=123.10 Aligned_cols=77 Identities=14% Similarity=0.241 Sum_probs=71.9
Q ss_pred CCCCEEEEccCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 52 KPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 52 ~~~~tVfVgNLp~-~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
.+.++|||+|||+ .+++++|+.+|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3578999999999 99999999999999999999998873 78999999999999999999999999999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 107 a~~ 109 (229)
T 2adc_A 107 SKH 109 (229)
T ss_dssp CSC
T ss_pred ecC
Confidence 764
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.19 E-value=6.4e-11 Score=123.54 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=77.4
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
..++|||+|||+.+++++|..+|+.||.|..+.++.++.+|.++|||||.|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999886
Q ss_pred c
Q 004460 133 A 133 (752)
Q Consensus 133 s 133 (752)
.
T Consensus 174 ~ 174 (284)
T 3smz_A 174 A 174 (284)
T ss_dssp G
T ss_pred C
Confidence 4
No 188
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.19 E-value=3.9e-11 Score=125.73 Aligned_cols=82 Identities=12% Similarity=0.235 Sum_probs=75.0
Q ss_pred CCCCCEEEEccCCCC-CCHHHHHHHHhhcCCeeEEEEeecCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004460 51 EKPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPS-NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~-vte~~L~~lFs~~G~I~~~ki~~d~~-tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (752)
..+.++|||+|||+. ++.++|+.+|+.||.|..+.++.+.. ||.++|||||.|.+.++|.+|+ .|||..|+|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 345789999999999 99999999999999999999999864 5999999999999999999999 99999999999999
Q ss_pred Eeecc
Q 004460 129 KVDQA 133 (752)
Q Consensus 129 ~~a~s 133 (752)
.|+..
T Consensus 286 ~~a~~ 290 (292)
T 2ghp_A 286 SLADK 290 (292)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99865
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.15 E-value=8.8e-11 Score=122.50 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=76.9
Q ss_pred CCCCEEEEccCCCCC-CHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 52 KPQTKVYVGKIAPTA-DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 52 ~~~~tVfVgNLp~~v-te~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
.+.++|||+|||+.+ ++++|+.+|+.||.|..+.++.++ +|.++|||||.|.+.++|.+|+..|||..|+|+.|.|.|
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 457899999999995 899999999999999999999985 899999999999999999999999999999999999999
Q ss_pred ecch
Q 004460 131 DQAT 134 (752)
Q Consensus 131 a~s~ 134 (752)
+...
T Consensus 261 a~~~ 264 (284)
T 3smz_A 261 CAPG 264 (284)
T ss_dssp CCSS
T ss_pred ecCC
Confidence 8754
No 190
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.15 E-value=1.9e-11 Score=118.00 Aligned_cols=81 Identities=21% Similarity=0.365 Sum_probs=71.6
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
..+.++|||+|||..+++++|+.+|..||.+..+ ++.+..+|.++|||||+|.+.++|..||. |||..|+|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 4568999999999999999999999999987663 33444689999999999999999999995 999999999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 88 ~~~ 90 (175)
T 1fje_B 88 PKG 90 (175)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 191
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.13 E-value=9e-11 Score=118.29 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=70.0
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCe--eEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCe----E
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTV--KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ----E 125 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I--~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr----~ 125 (752)
.+.++|||+|||+.+++++|+.+|+.||.| ..+.++.+. |..+|||||+|.+.++|..||..|||..|+|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 457899999999999999999999999999 899988763 66679999999999999999999999999876 5
Q ss_pred EEEEee
Q 004460 126 LMLKVD 131 (752)
Q Consensus 126 L~V~~a 131 (752)
+.|+|+
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777765
No 192
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.13 E-value=6.8e-11 Score=122.29 Aligned_cols=79 Identities=19% Similarity=0.278 Sum_probs=70.9
Q ss_pred CCCCCCEEEEccCCCCC---------CHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce
Q 004460 50 AEKPQTKVYVGKIAPTA---------DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 120 (752)
Q Consensus 50 ~~~~~~tVfVgNLp~~v---------te~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~ 120 (752)
.....++||||||+..+ ++..|+.+|+.||.|.+|.|+.+ +|||||+|.+.++|..|+..|||..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 35568999999999998 68999999999999999999864 6999999999999999999999999
Q ss_pred e------------CCeEEEEEeecch
Q 004460 121 I------------DGQELMLKVDQAT 134 (752)
Q Consensus 121 I------------~Gr~L~V~~a~s~ 134 (752)
| +|+.|.|.|+...
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred EeccccccccccCCCCEEEEEEccCC
Confidence 9 8999999998754
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.11 E-value=8.2e-11 Score=116.09 Aligned_cols=75 Identities=15% Similarity=0.256 Sum_probs=70.7
Q ss_pred CCEEEEccCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeec
Q 004460 54 QTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (752)
Q Consensus 54 ~~tVfVgNLp~-~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (752)
.++|||+|||+ .+++++|..+|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 68999999999 99999999999999999999998763 7899999999999999999999999999999999876
Q ss_pred c
Q 004460 133 A 133 (752)
Q Consensus 133 s 133 (752)
.
T Consensus 78 ~ 78 (198)
T 1qm9_A 78 H 78 (198)
T ss_dssp C
T ss_pred C
Confidence 5
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.10 E-value=2.4e-10 Score=118.62 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=70.5
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (752)
..+.++|||||||+++++++|..+|+.||.|..|.+..+ +|||||.|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 345789999999999999999999999999999988643 69999999999999999999999999999999998
Q ss_pred ecc
Q 004460 131 DQA 133 (752)
Q Consensus 131 a~s 133 (752)
+..
T Consensus 93 a~~ 95 (261)
T 3sde_A 93 ATH 95 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 753
No 195
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=2.5e-10 Score=103.74 Aligned_cols=78 Identities=12% Similarity=0.136 Sum_probs=67.5
Q ss_pred CCCCEEEEccCCCCCC-----------HHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce
Q 004460 52 KPQTKVYVGKIAPTAD-----------SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 120 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vt-----------e~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~ 120 (752)
.+.++|+|.||..... +++|+.+|++||.|..|.| .++ .++|||||+|.+.++|..|+..|||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 3578999999955433 4799999999999999965 442 389999999999999999999999999
Q ss_pred eCCeEEEEEeecc
Q 004460 121 IDGQELMLKVDQA 133 (752)
Q Consensus 121 I~Gr~L~V~~a~s 133 (752)
|+|+.|.|.++..
T Consensus 89 ~~gr~l~v~~a~~ 101 (112)
T 2dit_A 89 FGGRQITAQAWDG 101 (112)
T ss_dssp ETTEECEEEECCS
T ss_pred ECCcEEEEEEeCC
Confidence 9999999998765
No 196
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.07 E-value=4.6e-10 Score=101.57 Aligned_cols=82 Identities=17% Similarity=0.078 Sum_probs=70.4
Q ss_pred CCCCEEEEccCCC--CCC--------HHHHHHHHhhcCCeeEEEEeecCCC--CCCccEEEEEeCCHHHHHHHHHHhCCc
Q 004460 52 KPQTKVYVGKIAP--TAD--------SDFVLSVLKVCGTVKSWKRAQYPSN--GTPKGFGFCEFESAEGVLRALRLLNKF 119 (752)
Q Consensus 52 ~~~~tVfVgNLp~--~vt--------e~~L~~lFs~~G~I~~~ki~~d~~t--Gk~kGfgFVeF~~~esA~~Al~~Lng~ 119 (752)
.+++.|.|.|+-. .+. .++|+..|++||.|.++.|+.++.+ +.++|||||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 4578899999833 333 2589999999999999999988644 468999999999999999999999999
Q ss_pred eeCCeEEEEEeecc
Q 004460 120 NIDGQELMLKVDQA 133 (752)
Q Consensus 120 ~I~Gr~L~V~~a~s 133 (752)
.++|+.|.|.+...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998764
No 197
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.07 E-value=6.4e-10 Score=109.62 Aligned_cols=78 Identities=18% Similarity=0.299 Sum_probs=71.5
Q ss_pred CCCCCEEEEccCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEE
Q 004460 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELML 128 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lFs~~G-~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~-Gr~L~V 128 (752)
..+.++|||+|||..+++++|+.+|+.|| .|..+.++.+ .+|||||+|.+.++|..|+..|||..|+ |+.|.|
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 191 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 191 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEE
Confidence 34589999999999999999999999999 9999998654 2689999999999999999999999999 999999
Q ss_pred Eeecc
Q 004460 129 KVDQA 133 (752)
Q Consensus 129 ~~a~s 133 (752)
.|+..
T Consensus 192 ~~a~~ 196 (198)
T 1qm9_A 192 SFSKS 196 (198)
T ss_dssp EEECC
T ss_pred Eeecc
Confidence 99864
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.07 E-value=2.6e-10 Score=119.36 Aligned_cols=81 Identities=17% Similarity=0.280 Sum_probs=70.7
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G-~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (752)
..++|||+|||+.++..+|..+|+.|| .|..+.++.+. .|.++|||||.|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 99999999885 5889999999999999999999999999999999999988
Q ss_pred cch
Q 004460 132 QAT 134 (752)
Q Consensus 132 ~s~ 134 (752)
...
T Consensus 195 ~~~ 197 (292)
T 2ghp_A 195 NPL 197 (292)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 199
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.06 E-value=3.6e-10 Score=117.31 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=73.3
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC-CceeC---CeEEE
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN-KFNID---GQELM 127 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Ln-g~~I~---Gr~L~ 127 (752)
.+.++|||+|||+.++...|..+|+.||.|..+.++.+ .+|.++|||||+|.+.++|.+|+..|| +..+. +++|.
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 45789999999999999999999999999999999999 699999999999999999999999994 54544 89999
Q ss_pred EEeecc
Q 004460 128 LKVDQA 133 (752)
Q Consensus 128 V~~a~s 133 (752)
|.++..
T Consensus 173 v~~~~~ 178 (261)
T 3sde_A 173 VEPMEQ 178 (261)
T ss_dssp EEECCC
T ss_pred Eeeccc
Confidence 987763
No 200
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.03 E-value=1.3e-10 Score=104.85 Aligned_cols=72 Identities=14% Similarity=0.139 Sum_probs=64.3
Q ss_pred EccCCCCCCHHHHHHHH------------hhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 004460 59 VGKIAPTADSDFVLSVL------------KVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126 (752)
Q Consensus 59 VgNLp~~vte~~L~~lF------------s~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L 126 (752)
++||+..+++..|+.+| ++||.|.++.++.+. +|.++|||||.|.+.++|.+|+..|||..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 66777888887777666 999999999999884 68999999999999999999999999999999999
Q ss_pred EEEee
Q 004460 127 MLKVD 131 (752)
Q Consensus 127 ~V~~a 131 (752)
.|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99876
No 201
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.01 E-value=7.6e-10 Score=112.52 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=70.8
Q ss_pred CCCCEEEEccCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 004460 52 KPQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLK 129 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lFs~~G-~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~-Gr~L~V~ 129 (752)
.+.++|||+|||..+++++|+.+|+.|| .|..+.++.. .+|||||+|.+.++|..|+..|||..|+ |+.|.|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4579999999999999999999999999 9999998653 3689999999999999999999999999 9999999
Q ss_pred eecc
Q 004460 130 VDQA 133 (752)
Q Consensus 130 ~a~s 133 (752)
|+..
T Consensus 224 ~a~~ 227 (229)
T 2adc_A 224 FSKS 227 (229)
T ss_dssp ECSS
T ss_pred EecC
Confidence 9864
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.00 E-value=8.7e-10 Score=102.02 Aligned_cols=81 Identities=17% Similarity=0.080 Sum_probs=70.6
Q ss_pred CCCEEEEccCCCC-----CCHHHHHHHHhhcCCeeEEEEeecCC----CCCCccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 004460 53 PQTKVYVGKIAPT-----ADSDFVLSVLKVCGTVKSWKRAQYPS----NGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 123 (752)
Q Consensus 53 ~~~tVfVgNLp~~-----vte~~L~~lFs~~G~I~~~ki~~d~~----tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~G 123 (752)
++++|+|.|+-.. -..++|+..|++||.|.++.|+.++. ++.++||+||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 5789999998532 23578999999999999999998753 45778999999999999999999999999999
Q ss_pred eEEEEEeecc
Q 004460 124 QELMLKVDQA 133 (752)
Q Consensus 124 r~L~V~~a~s 133 (752)
+.|.|.+...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998764
No 203
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.99 E-value=9.1e-10 Score=105.48 Aligned_cols=73 Identities=22% Similarity=0.402 Sum_probs=64.8
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhc----C-------CeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVC----G-------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 121 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~----G-------~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I 121 (752)
+.++|||+|||+.+++++|+.+|+.| | .|..+.+. .++|||||+|.+.++|..|+ .|||..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 66666553 45799999999999999999 7999999
Q ss_pred CCeEEEEEeec
Q 004460 122 DGQELMLKVDQ 132 (752)
Q Consensus 122 ~Gr~L~V~~a~ 132 (752)
+|+.|.|.++.
T Consensus 76 ~g~~i~v~~~~ 86 (172)
T 2g4b_A 76 QGQSLKIRRPH 86 (172)
T ss_dssp TTEECEEECCS
T ss_pred cCceeeecCCc
Confidence 99999998654
No 204
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.96 E-value=1.4e-09 Score=106.63 Aligned_cols=74 Identities=22% Similarity=0.385 Sum_probs=64.5
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhc----C-------CeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVC----G-------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 121 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~----G-------~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I 121 (752)
..++|||+|||+.+++++|..+|+.| | .|..+.+ +.++|||||+|.+.++|..|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 47899999999999999999999999 4 4555543 456799999999999999999 7999999
Q ss_pred CCeEEEEEeecc
Q 004460 122 DGQELMLKVDQA 133 (752)
Q Consensus 122 ~Gr~L~V~~a~s 133 (752)
+|+.|.|.++..
T Consensus 76 ~g~~i~v~~~~~ 87 (198)
T 2yh0_A 76 QGQSLKIRRPHD 87 (198)
T ss_dssp TTEEEEEECCCC
T ss_pred cCceEEEeCCCC
Confidence 999999987654
No 205
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.85 E-value=4.3e-09 Score=114.28 Aligned_cols=76 Identities=24% Similarity=0.361 Sum_probs=65.1
Q ss_pred CCCCCEEEEcc--CCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC---Ce-
Q 004460 51 EKPQTKVYVGK--IAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQ- 124 (752)
Q Consensus 51 ~~~~~tVfVgN--Lp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~---Gr- 124 (752)
..++.+||||| |++.+++++|+.+|++||.|.++.+.. ++|||||+|.+.++|.+|+..|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45688999999 589999999999999999999887643 4699999999999999999999999883 44
Q ss_pred -EEEEEeec
Q 004460 125 -ELMLKVDQ 132 (752)
Q Consensus 125 -~L~V~~a~ 132 (752)
.|.|.+..
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 57777664
No 206
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=3.5e-08 Score=88.59 Aligned_cols=73 Identities=15% Similarity=0.122 Sum_probs=60.6
Q ss_pred CCEEEEccCC-------CCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 004460 54 QTKVYVGKIA-------PTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126 (752)
Q Consensus 54 ~~tVfVgNLp-------~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L 126 (752)
...|.|.-.. ..+++++|+.+|++||.|..|.|+ +.++|||||+|.+.++|..||..+++ +.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 3455555433 568999999999999999999987 47889999999999999999997554 679999
Q ss_pred EEEeecc
Q 004460 127 MLKVDQA 133 (752)
Q Consensus 127 ~V~~a~s 133 (752)
.|.|+..
T Consensus 83 ~V~~a~~ 89 (100)
T 2d9o_A 83 KISWLEG 89 (100)
T ss_dssp EEECSSC
T ss_pred EEEEccC
Confidence 9998754
No 207
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.74 E-value=4.6e-08 Score=89.91 Aligned_cols=82 Identities=12% Similarity=0.082 Sum_probs=66.6
Q ss_pred CCCEEEEccCCCCCC----------HHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC
Q 004460 53 PQTKVYVGKIAPTAD----------SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (752)
Q Consensus 53 ~~~tVfVgNLp~~vt----------e~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~ 122 (752)
+++.|.+.|+-.... .++|+..|++||.|.++.+..+. ++|||||.|.+.++|.+|+..|||..++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 366788888744222 24789999999999999886652 5899999999999999999999999999
Q ss_pred CeEEEEEeecchHHHHH
Q 004460 123 GQELMLKVDQATREYLE 139 (752)
Q Consensus 123 Gr~L~V~~a~s~kk~le 139 (752)
|+.|.|.+... ..|..
T Consensus 82 GR~i~v~~~~~-~~y~~ 97 (114)
T 3s6e_A 82 GKMITAAYVPL-PTYHN 97 (114)
T ss_dssp TEECEEEEECH-HHHHH
T ss_pred CEEEEEEEEcH-HHHHH
Confidence 99999998863 34443
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=5.5e-08 Score=90.37 Aligned_cols=89 Identities=13% Similarity=0.132 Sum_probs=75.6
Q ss_pred CCCCCEEEEccCCCC-CCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCC-HHHHHHHHHHh--CCceeCCeEE
Q 004460 51 EKPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES-AEGVLRALRLL--NKFNIDGQEL 126 (752)
Q Consensus 51 ~~~~~tVfVgNLp~~-vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~-~esA~~Al~~L--ng~~I~Gr~L 126 (752)
-.+++.|||+||+.. ++.++|+.+|+.||.|..|.++.+.. +|||.|.+ ..+|..|+..| +++.|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 356899999999999 99999999999999999999988752 69999999 89999999999 4788999888
Q ss_pred EEEeec--chHHHHHHHHHHh
Q 004460 127 MLKVDQ--ATREYLERYVDKK 145 (752)
Q Consensus 127 ~V~~a~--s~kk~le~~k~kk 145 (752)
.+.+.. .-+.|+.+..+.+
T Consensus 89 ~~evL~GeeE~~yw~Ki~ed~ 109 (121)
T 1owx_A 89 TWEVLEGEVEKEALKKIIEDQ 109 (121)
T ss_dssp EEEECCHHHHHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHH
Confidence 887754 4466777766543
No 209
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.62 E-value=8.8e-08 Score=84.35 Aligned_cols=72 Identities=15% Similarity=0.128 Sum_probs=61.5
Q ss_pred CCCCEEEEccCCC----CCCH----HHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 004460 52 KPQTKVYVGKIAP----TADS----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 123 (752)
Q Consensus 52 ~~~~tVfVgNLp~----~vte----~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~G 123 (752)
++..||+|..++. +... ..|...|++||.|..++++.+ .+||+|.+.++|.+|+. |||+.|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeCC
Confidence 3467899988762 3333 578999999999999999887 38999999999999999 99999999
Q ss_pred eEEEEEeec
Q 004460 124 QELMLKVDQ 132 (752)
Q Consensus 124 r~L~V~~a~ 132 (752)
+.|+|.++.
T Consensus 76 r~LkV~lkt 84 (91)
T 2dnr_A 76 RTITIALKS 84 (91)
T ss_dssp EEEEEEECC
T ss_pred eEEEEEeCC
Confidence 999998764
No 210
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.40 E-value=5.4e-07 Score=79.81 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=60.9
Q ss_pred CCCCEEEEccCCCC------CCH---HHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC
Q 004460 52 KPQTKVYVGKIAPT------ADS---DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (752)
Q Consensus 52 ~~~~tVfVgNLp~~------vte---~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~ 122 (752)
++..||+|..++.. ..+ ..|.+.|..||.|..++++.+. +||+|.+.++|++||. |||+.|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 34779999988743 332 4688999999999999999873 9999999999999999 9999999
Q ss_pred CeEEEEEee
Q 004460 123 GQELMLKVD 131 (752)
Q Consensus 123 Gr~L~V~~a 131 (752)
|+.|.|.+-
T Consensus 84 Gr~L~V~~k 92 (95)
T 1ufw_A 84 GRAVKISGP 92 (95)
T ss_dssp TEEEEEECC
T ss_pred CeEEEEecc
Confidence 999999753
No 211
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.19 E-value=2.6e-06 Score=85.90 Aligned_cols=67 Identities=19% Similarity=0.075 Sum_probs=59.9
Q ss_pred CHHHHHHHHhhcCCeeEEEEeecC----CCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeecc
Q 004460 67 DSDFVLSVLKVCGTVKSWKRAQYP----SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (752)
Q Consensus 67 te~~L~~lFs~~G~I~~~ki~~d~----~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~s 133 (752)
...+|...|++||.|.++.++.+. .+|.++||+||+|.+.++|.+|+..|||..++|+.|.|.+...
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 456899999999999999998553 4558999999999999999999999999999999999998764
No 212
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.00043 Score=62.76 Aligned_cols=71 Identities=10% Similarity=0.071 Sum_probs=65.7
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhc-----CCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVC-----GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~-----G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~ 127 (752)
..++|-+-|||..++...|+.|+..+ |.+..+.++.+. +-|+|+|.+...|-+|.-.|+|..|+|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 46789999999999999999999999 999999998874 5699999999999999988999999999999
Q ss_pred EE
Q 004460 128 LK 129 (752)
Q Consensus 128 V~ 129 (752)
|.
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 85
No 213
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.56 E-value=0.0055 Score=55.10 Aligned_cols=74 Identities=14% Similarity=0.020 Sum_probs=63.3
Q ss_pred CCEEEEccCCCCCCH-----HHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004460 54 QTKVYVGKIAPTADS-----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (752)
Q Consensus 54 ~~tVfVgNLp~~vte-----~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (752)
.++|+|.||+..+-. ..++.+|..|+.+..|..... -.-..|.|.++++|.+|-..||+..++|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 578999999886632 478999999999999887654 235789999999999999999999999999999
Q ss_pred Eeecc
Q 004460 129 KVDQA 133 (752)
Q Consensus 129 ~~a~s 133 (752)
-+++.
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 88873
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.88 E-value=0.12 Score=45.92 Aligned_cols=54 Identities=11% Similarity=0.102 Sum_probs=44.9
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 116 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~L 116 (752)
...++| +.|......+|..+|+.||.| .|..+.| .-|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhc
Confidence 445566 999999999999999999843 4555666 38999999999999999866
No 215
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=94.73 E-value=0.096 Score=45.98 Aligned_cols=68 Identities=10% Similarity=0.120 Sum_probs=55.8
Q ss_pred CEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCC--CccEEEEEeCCHHHHHHHHHHhCCceeC
Q 004460 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGT--PKGFGFCEFESAEGVLRALRLLNKFNID 122 (752)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk--~kGfgFVeF~~~esA~~Al~~Lng~~I~ 122 (752)
++|.|.+||+++|++.+...++..+.+..+..+.+..+.+ ..+-|+|.|.+.+.+......++|..+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 5789999999999999999999988876666655543333 3467999999999999999999998763
No 216
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.17 E-value=0.25 Score=44.27 Aligned_cols=68 Identities=22% Similarity=0.349 Sum_probs=55.8
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhh----c-CCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKV----C-GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~----~-G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~ 127 (752)
...+|.|.|||+.+..+.|.-+|.+ . |.|..|.... +-|+|+|.+...|.+.|. -..+.|.|..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEEE
Confidence 4689999999999999999999986 2 5788877532 478999999999998887 336778888888
Q ss_pred EE
Q 004460 128 LK 129 (752)
Q Consensus 128 V~ 129 (752)
|.
T Consensus 78 V~ 79 (104)
T 2dhx_A 78 LR 79 (104)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 217
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=93.81 E-value=0.18 Score=46.38 Aligned_cols=70 Identities=13% Similarity=0.089 Sum_probs=55.6
Q ss_pred CCCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC-eEEEEEe
Q 004460 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-QELMLKV 130 (752)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~G-r~L~V~~ 130 (752)
..+-|.|-+.|+.. ...|...|++||.|...... ....+-.|.|.+..+|.+||. .||..|+| -.|-|..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 36778888888875 56788899999999988752 124689999999999999999 89999985 4445543
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.07 E-value=0.18 Score=47.17 Aligned_cols=86 Identities=15% Similarity=0.095 Sum_probs=56.8
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeec-------------CCCC-CCccEEEEEeCCHHHHHHHHHHhCCc
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQY-------------PSNG-TPKGFGFCEFESAEGVLRALRLLNKF 119 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d-------------~~tG-k~kGfgFVeF~~~esA~~Al~~Lng~ 119 (752)
.+.|.|-+.|+... ..+...|++||.|..-.-... ...+ ...++-.|.|.++.+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 45567777776654 566678999999876211110 0011 135678999999999999999 9999
Q ss_pred eeCCeEEEEEeecchHHHHHHHHH
Q 004460 120 NIDGQELMLKVDQATREYLERYVD 143 (752)
Q Consensus 120 ~I~Gr~L~V~~a~s~kk~le~~k~ 143 (752)
.|+|..|-|. ...+..++....
T Consensus 85 ii~G~mIGV~--Py~~~~ve~l~~ 106 (132)
T 3p3d_A 85 VFNGVLLGVI--PYTKDAVERLQK 106 (132)
T ss_dssp EETTEECEEE--ECCHHHHHHHC-
T ss_pred EeCcEEEEEE--ECCHHHHHHHhc
Confidence 9999754444 445555655443
No 219
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=90.77 E-value=0.25 Score=43.95 Aligned_cols=53 Identities=11% Similarity=0.033 Sum_probs=44.8
Q ss_pred EEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 004460 57 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 117 (752)
Q Consensus 57 VfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Ln 117 (752)
||+-+.|......+|..+|+.|| -..|..+.| .-|||.|.+++.|..|+..+.
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEEeCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 44449999999999999999999 456666777 489999999999999998764
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=88.06 E-value=0.42 Score=44.67 Aligned_cols=36 Identities=19% Similarity=0.051 Sum_probs=29.2
Q ss_pred EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce
Q 004460 83 SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 120 (752)
Q Consensus 83 ~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~ 120 (752)
.++++.+. ..++|||||+|.+...|.+|+..+++..
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccC
Confidence 45666663 4799999999999999999998887643
No 221
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=85.78 E-value=0.43 Score=53.54 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=41.8
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHH
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALR 114 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~ 114 (752)
.++|||. .|..++...|..+|++||.|.++.+..+ .| .|+.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~--~g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES--FG---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS--SS---EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc--CC---eEEEEEeCCHHHHHHHHh
Confidence 4799997 7999999999999999999999987654 22 899999999999887765
No 222
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=85.27 E-value=0.46 Score=44.19 Aligned_cols=40 Identities=23% Similarity=0.182 Sum_probs=35.6
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEEeec
Q 004460 92 NGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMLKVDQ 132 (752)
Q Consensus 92 tGk~kGfgFVeF~~~esA~~Al~~L-ng~~I~Gr~L~V~~a~ 132 (752)
..+.+|+++++|.+.+.|.+|+..| ||..|+| .|.|.++.
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~ 49 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDAT 49 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceeccccc
Confidence 4578999999999999999999999 9999999 88887554
No 223
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=85.04 E-value=0.95 Score=40.12 Aligned_cols=69 Identities=7% Similarity=0.048 Sum_probs=49.5
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCC--CccEEEEEeCCHHHHHHHHHHhCCceeC
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGT--PKGFGFCEFESAEGVLRALRLLNKFNID 122 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk--~kGfgFVeF~~~esA~~Al~~Lng~~I~ 122 (752)
+-+|.|..||+++|++.+...++.+-.+.....+.+..+-+ .-+-|+|.|.+.+++......++|..+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 56799999999999999887777654432222222221212 2356899999999999999999998763
No 224
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=71.38 E-value=5 Score=27.05 Aligned_cols=6 Identities=83% Similarity=1.996 Sum_probs=2.2
Q ss_pred CCCCCC
Q 004460 8 PRPPGP 13 (752)
Q Consensus 8 P~pP~p 13 (752)
|+||+|
T Consensus 3 pgppgp 8 (31)
T 4gyx_A 3 PGPPGP 8 (31)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 333333
No 225
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=61.10 E-value=18 Score=40.79 Aligned_cols=55 Identities=11% Similarity=0.067 Sum_probs=45.2
Q ss_pred CCEEEEccCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 004460 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 117 (752)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lFs~~G~I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Ln 117 (752)
...++|+ .|..+...+|..+|+.||. ..+.++.+ ..+||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 3456665 8888899999999999994 46666665 479999999999999998884
No 226
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=58.02 E-value=3.6 Score=30.87 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Q 004460 709 ASQMLELLQTILDDEAEMFVLKM 731 (752)
Q Consensus 709 p~~l~~~l~~~ld~~a~~fv~~l 731 (752)
-..|++++..+|+.+|+.||...
T Consensus 16 ~D~lLDeId~vLE~NAeeFV~~f 38 (44)
T 3m91_B 16 TDDLLDEIDDVLEENAEDFVRAY 38 (44)
T ss_dssp HHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Confidence 35899999999999999999754
No 227
>2v75_A Nuclear polyadenylated RNA-binding protein NAB2; metal-binding, nucleus, zinc-finger, nuclear PR; 1.8A {Saccharomyces cerevisiae} PDB: 2jps_A 3lcn_A
Probab=55.26 E-value=32 Score=30.24 Aligned_cols=61 Identities=15% Similarity=0.247 Sum_probs=47.6
Q ss_pred hhhhhhhhHHHHHHHhhCCchh--HHHHHHHHhhhcCCCHHHHHHHHHHhhhHH-H---HHHHHHHH
Q 004460 672 LHERMRPWISKKITEFLGEEET--TLVDYIVSSTQDHVKASQMLELLQTILDDE-A---EMFVLKMW 732 (752)
Q Consensus 672 ~~~~~~pwi~kki~e~lG~ee~--~lvd~i~~~l~~~~~p~~l~~~l~~~ld~~-a---~~fv~~lW 732 (752)
+-+-||--|.+|...+=.+-|+ .|-+||+=.+....+|..++.+|...+|.= . ..||.-.+
T Consensus 6 i~~nLK~ivaekL~~~~NF~EDv~YVAEyIvlLisNg~s~~sivqELssLFd~v~~~a~~~vVqt~F 72 (104)
T 2v75_A 6 YTENLKVIVAEKLAGIPNFNEDIKYVAEYIVLLIVNGGTVESVVDELASLFDSVSRDTLANVVQTAF 72 (104)
T ss_dssp CHHHHHHHHHHHHTTSTTCCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccCccccHHHHHHHhheeeeCCCChHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 3456788899998888566555 488999999999999999999999999843 2 35665444
No 228
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=42.79 E-value=31 Score=23.24 Aligned_cols=16 Identities=44% Similarity=0.762 Sum_probs=8.2
Q ss_pred CCCCCCCCCCCCCCCC
Q 004460 4 PAFPPRPPGPVGVLPS 19 (752)
Q Consensus 4 P~~PP~pP~p~g~~P~ 19 (752)
|+-||+|-+.++++--
T Consensus 2 ppgppgprgqpgvmgf 17 (31)
T 4gyx_A 2 PPGPPGPRGQPGVMGF 17 (31)
T ss_dssp CCCCCCCCCCCCCCCC
T ss_pred CCCCCCCCCCCccccC
Confidence 4445555555555443
No 229
>3qks_C DNA double-strand break repair protein MRE11; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_C* 3qku_C*
Probab=36.99 E-value=16 Score=25.74 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=16.2
Q ss_pred HHHHHHHhhCCchhHHHHHHHHhhh
Q 004460 680 ISKKITEFLGEEETTLVDYIVSSTQ 704 (752)
Q Consensus 680 i~kki~e~lG~ee~~lvd~i~~~l~ 704 (752)
+..||+++||+.+=.=+|+|++.+.
T Consensus 7 ~ElKiI~l~Gek~~e~~d~vi~l~~ 31 (34)
T 3qks_C 7 FELKIIDILGEKDFDDFDYIIKLIT 31 (34)
T ss_dssp HHHHHHHHC------CHHHHHHHTT
T ss_pred HHHHHHHHHccchHHHHHHHHHHHH
Confidence 4689999999988888899998875
No 230
>3m9d_G Prokaryotic ubiquitin-like protein PUP; alpha helix coil COIL, 5 beta-strand barrel, ATP-binding, CH nucleotide-binding, proteasome; 4.50A {Mycobacterium tuberculosis}
Probab=28.57 E-value=8.1 Score=31.60 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHH
Q 004460 708 KASQMLELLQTILDDEAEMFVLKM 731 (752)
Q Consensus 708 ~p~~l~~~l~~~ld~~a~~fv~~l 731 (752)
+-..||+++..||..+|+.||..+
T Consensus 39 ~~D~lLDeId~vLe~NAeefV~~f 62 (68)
T 3m9d_G 39 ETDDLLDEIDDVLEENAEDFVRAY 62 (68)
T ss_dssp TTTTHHHHHTTTSSSCC-------
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHH
Confidence 445789999999999999999754
No 231
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=28.27 E-value=1.1e+02 Score=24.79 Aligned_cols=67 Identities=9% Similarity=0.139 Sum_probs=40.4
Q ss_pred EEEEc-cCCCCCCHHHHHHHHhhcCC-----eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004460 56 KVYVG-KIAPTADSDFVLSVLKVCGT-----VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (752)
Q Consensus 56 tVfVg-NLp~~vte~~L~~lFs~~G~-----I~~~ki~~d~~tGk~kGfgFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (752)
++||+ +--..+...+|..+++.-+. |-.+.+.. .|.||+-... .+..++..|++..+.|+.+.|.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 56663 23446666777777775543 34555533 3888887654 4667888899999999999886
Q ss_pred ee
Q 004460 130 VD 131 (752)
Q Consensus 130 ~a 131 (752)
.+
T Consensus 73 ~~ 74 (76)
T 2g0c_A 73 KA 74 (76)
T ss_dssp EC
T ss_pred EC
Confidence 54
No 232
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=20.57 E-value=26 Score=30.68 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=0.0
Q ss_pred CCCCEEEEccCCCCCCHHH
Q 004460 52 KPQTKVYVGKIAPTADSDF 70 (752)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~ 70 (752)
...++|||+|||+.+|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 3456899999999998753
Done!