Query 004461
Match_columns 752
No_of_seqs 357 out of 2437
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 23:47:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004461hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 8E-136 2E-140 1205.3 78.6 717 7-728 18-796 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 3E-109 7E-114 963.5 57.9 709 11-730 2-768 (769)
3 PRK03562 glutathione-regulated 100.0 1.5E-41 3.2E-46 393.1 42.3 364 31-418 4-411 (621)
4 PRK10669 putative cation:proto 100.0 9.8E-41 2.1E-45 385.1 41.4 374 33-431 7-437 (558)
5 PRK03659 glutathione-regulated 100.0 2.7E-40 5.8E-45 382.1 42.3 363 33-418 6-411 (601)
6 COG0475 KefB Kef-type K+ trans 100.0 5.9E-38 1.3E-42 344.4 39.3 338 32-388 6-389 (397)
7 PRK05326 potassium/proton anti 100.0 5E-33 1.1E-37 320.8 36.0 339 30-385 4-389 (562)
8 PF00999 Na_H_Exchanger: Sodiu 100.0 2.1E-33 4.6E-38 310.5 -3.0 332 39-383 3-378 (380)
9 TIGR00932 2a37 transporter, mo 100.0 1.3E-28 2.8E-33 259.5 26.2 228 42-287 2-273 (273)
10 COG4651 RosB Kef-type K+ trans 100.0 8E-28 1.7E-32 238.7 28.7 340 27-388 2-392 (408)
11 PRK11175 universal stress prot 99.9 1.3E-23 2.8E-28 225.4 18.1 282 408-725 4-299 (305)
12 TIGR00831 a_cpa1 Na+/H+ antipo 99.9 1.5E-21 3.1E-26 222.6 33.4 327 38-383 4-408 (525)
13 TIGR00844 c_cpa1 na(+)/h(+) an 99.9 2.3E-21 5.1E-26 221.4 34.9 323 20-355 3-386 (810)
14 COG0025 NhaP NhaP-type Na+/H+ 99.9 6.2E-20 1.4E-24 203.5 34.5 337 32-384 6-407 (429)
15 TIGR00840 b_cpa1 sodium/hydrog 99.8 1.6E-17 3.5E-22 189.4 32.8 342 31-384 8-417 (559)
16 COG3263 NhaP-type Na+/H+ and K 99.8 2.1E-18 4.6E-23 180.1 22.2 314 29-360 4-361 (574)
17 cd01988 Na_H_Antiporter_C The 99.7 2.8E-16 6.2E-21 146.2 12.2 131 409-563 1-131 (132)
18 PRK15456 universal stress prot 99.6 1.2E-15 2.5E-20 144.5 8.6 137 408-563 3-141 (142)
19 cd01989 STK_N The N-terminal d 99.6 1.7E-15 3.6E-20 144.1 9.5 140 409-563 1-143 (146)
20 PRK15005 universal stress prot 99.6 4.2E-15 9.1E-20 140.9 8.9 136 408-563 3-143 (144)
21 PRK15118 universal stress glob 99.6 1.5E-14 3.2E-19 137.2 10.0 134 408-564 4-138 (144)
22 PRK09982 universal stress prot 99.5 1.3E-14 2.8E-19 137.4 8.9 133 408-563 4-137 (142)
23 cd01987 USP_OKCHK USP domain i 99.5 1.8E-13 3.9E-18 126.2 9.7 122 409-563 1-123 (124)
24 KOG1965 Sodium/hydrogen exchan 99.4 2.4E-12 5.3E-17 141.5 17.7 346 34-388 37-459 (575)
25 PF00582 Usp: Universal stress 99.4 4.1E-13 8.8E-18 125.1 9.3 133 408-563 3-139 (140)
26 PRK10116 universal stress prot 99.4 8.3E-13 1.8E-17 124.8 11.2 136 408-565 4-139 (142)
27 PRK14853 nhaA pH-dependent sod 99.4 5.2E-10 1.1E-14 121.5 30.8 274 92-381 62-393 (423)
28 PRK11175 universal stress prot 99.3 2.2E-12 4.8E-17 138.3 8.8 143 407-568 152-303 (305)
29 cd00293 USP_Like Usp: Universa 99.2 1E-10 2.3E-15 107.4 11.1 129 409-562 1-129 (130)
30 KOG4505 Na+/H+ antiporter [Ino 99.1 7.7E-09 1.7E-13 105.5 21.1 292 49-351 31-382 (467)
31 COG0589 UspA Universal stress 99.1 4E-10 8.7E-15 107.2 10.8 144 407-564 5-151 (154)
32 cd01989 STK_N The N-terminal d 99.0 4E-09 8.7E-14 100.0 12.0 136 582-726 1-145 (146)
33 PRK15005 universal stress prot 98.9 5.7E-09 1.2E-13 98.7 11.2 133 580-725 2-144 (144)
34 PRK09982 universal stress prot 98.9 7E-09 1.5E-13 98.1 8.8 131 580-725 3-138 (142)
35 cd01988 Na_H_Antiporter_C The 98.8 3.1E-08 6.7E-13 91.8 11.9 131 582-725 1-132 (132)
36 TIGR00773 NhaA Na+/H+ antiport 98.8 9.6E-07 2.1E-11 94.5 23.6 240 92-352 52-344 (373)
37 PRK15456 universal stress prot 98.8 3.3E-08 7.1E-13 93.4 10.5 133 580-725 2-142 (142)
38 PF00582 Usp: Universal stress 98.8 1.8E-08 3.9E-13 93.5 8.4 132 580-724 2-139 (140)
39 PRK15118 universal stress glob 98.7 7.6E-08 1.7E-12 91.1 8.9 132 580-726 3-139 (144)
40 PRK10116 universal stress prot 98.7 5.6E-08 1.2E-12 91.7 7.6 129 580-725 3-138 (142)
41 cd01987 USP_OKCHK USP domain i 98.7 1.3E-07 2.9E-12 86.9 9.9 123 582-724 1-123 (124)
42 PRK14856 nhaA pH-dependent sod 98.6 6.4E-06 1.4E-10 89.6 23.9 268 92-380 68-428 (438)
43 PRK12652 putative monovalent c 98.6 1.9E-07 4.1E-12 100.8 10.6 110 407-532 5-125 (357)
44 PRK09560 nhaA pH-dependent sod 98.4 4E-05 8.6E-10 82.3 22.5 240 92-352 59-353 (389)
45 KOG1966 Sodium/hydrogen exchan 98.4 1E-07 2.2E-12 105.0 2.9 322 41-383 51-448 (670)
46 PRK14854 nhaA pH-dependent sod 98.4 5.3E-05 1.2E-09 80.9 22.5 259 92-370 56-366 (383)
47 PRK09561 nhaA pH-dependent sod 98.4 6.3E-05 1.4E-09 80.6 22.2 240 92-352 59-351 (388)
48 cd00293 USP_Like Usp: Universa 98.4 2.8E-06 6.2E-11 77.6 10.6 127 582-724 1-130 (130)
49 PRK12460 2-keto-3-deoxyglucona 98.3 0.00015 3.2E-09 75.7 23.4 254 101-386 51-307 (312)
50 PRK14855 nhaA pH-dependent sod 98.3 6.1E-05 1.3E-09 81.8 21.0 258 92-373 63-404 (423)
51 PRK12652 putative monovalent c 98.1 2.4E-05 5.1E-10 84.7 11.3 126 579-717 4-145 (357)
52 PF03812 KdgT: 2-keto-3-deoxyg 98.0 0.001 2.3E-08 69.1 21.8 258 101-384 51-311 (314)
53 PF06965 Na_H_antiport_1: Na+/ 98.0 1.7E-05 3.7E-10 84.9 8.2 248 91-356 54-355 (378)
54 COG0589 UspA Universal stress 97.9 9.8E-05 2.1E-09 69.8 12.1 138 579-726 4-152 (154)
55 COG3004 NhaA Na+/H+ antiporter 97.9 0.0015 3.3E-08 67.5 20.9 234 96-353 66-355 (390)
56 PRK10490 sensor protein KdpD; 97.8 6.9E-05 1.5E-09 91.8 11.1 125 405-564 248-373 (895)
57 COG0798 ACR3 Arsenite efflux p 97.7 0.026 5.7E-07 59.4 26.6 273 57-348 18-296 (342)
58 PF05684 DUF819: Protein of un 97.7 0.092 2E-06 57.7 30.8 274 55-358 24-352 (378)
59 TIGR00793 kdgT 2-keto-3-deoxyg 97.7 0.0034 7.4E-08 64.9 18.2 259 101-385 51-312 (314)
60 COG0385 Predicted Na+-dependen 97.4 0.081 1.8E-06 55.9 25.5 263 92-385 35-306 (319)
61 TIGR00832 acr3 arsenical-resis 97.4 0.059 1.3E-06 58.3 25.0 236 98-348 46-297 (328)
62 PF13593 DUF4137: SBF-like CPA 97.4 0.095 2.1E-06 56.3 25.4 226 94-341 30-269 (313)
63 COG2205 KdpD Osmosensitive K+ 97.3 0.0012 2.7E-08 76.2 10.7 121 405-558 246-366 (890)
64 PRK05274 2-keto-3-deoxyglucona 97.0 0.076 1.6E-06 56.9 20.5 258 103-388 55-317 (326)
65 TIGR00841 bass bile acid trans 97.0 0.65 1.4E-05 49.3 26.8 231 94-351 7-249 (286)
66 COG3493 CitS Na+/citrate sympo 96.9 0.18 3.9E-06 53.7 20.9 268 85-358 95-414 (438)
67 TIGR00698 conserved hypothetic 96.8 0.74 1.6E-05 49.7 25.5 144 51-213 26-173 (335)
68 PF03390 2HCT: 2-hydroxycarbox 96.8 0.12 2.6E-06 56.7 19.2 240 110-358 109-395 (414)
69 PF03601 Cons_hypoth698: Conse 96.7 0.69 1.5E-05 49.3 24.2 140 53-212 23-166 (305)
70 cd01984 AANH_like Adenine nucl 96.5 0.0069 1.5E-07 51.6 6.5 49 507-561 35-84 (86)
71 PRK10490 sensor protein KdpD; 96.0 0.037 8E-07 68.2 11.8 124 579-724 249-372 (895)
72 PF03956 DUF340: Membrane prot 95.7 0.11 2.4E-06 51.4 11.1 130 60-213 2-136 (191)
73 PRK03818 putative transporter; 95.7 0.33 7.2E-06 56.3 16.8 131 34-182 8-143 (552)
74 PF06826 Asp-Al_Ex: Predicted 95.4 0.35 7.6E-06 46.8 13.1 125 41-181 6-136 (169)
75 PF01758 SBF: Sodium Bile acid 95.3 0.84 1.8E-05 45.1 16.3 160 99-270 2-165 (187)
76 PRK03562 glutathione-regulated 95.3 0.54 1.2E-05 55.6 17.0 68 45-123 229-296 (621)
77 PRK03659 glutathione-regulated 95.1 0.73 1.6E-05 54.3 17.3 66 46-122 227-292 (601)
78 COG0786 GltS Na+/glutamate sym 94.5 5.9 0.00013 43.0 20.5 279 34-331 11-341 (404)
79 TIGR03802 Asp_Ala_antiprt aspa 94.5 0.28 6E-06 57.1 11.6 80 40-135 14-98 (562)
80 COG3180 AbrB Putative ammonia 94.4 8.9 0.00019 41.3 24.3 317 33-386 7-350 (352)
81 TIGR00930 2a30 K-Cl cotranspor 94.3 19 0.0004 44.9 43.3 131 405-564 573-708 (953)
82 PF03616 Glt_symporter: Sodium 94.1 11 0.00024 41.4 26.5 276 34-334 9-342 (368)
83 TIGR00783 ccs citrate carrier 93.9 4.3 9.4E-05 43.8 18.2 238 110-358 40-328 (347)
84 PRK04972 putative transporter; 93.8 0.43 9.3E-06 55.4 11.3 119 37-180 17-140 (558)
85 TIGR01625 YidE_YbjL_dupl AspT/ 93.5 0.43 9.2E-06 45.5 8.9 115 55-183 20-139 (154)
86 PRK10669 putative cation:proto 93.4 2.3 5E-05 49.7 16.8 58 52-120 244-301 (558)
87 PLN03159 cation/H(+) antiporte 92.4 4.7 0.0001 49.4 17.9 43 404-449 627-669 (832)
88 TIGR00210 gltS sodium--glutama 92.3 21 0.00047 39.6 25.1 103 32-146 7-118 (398)
89 TIGR03802 Asp_Ala_antiprt aspa 92.0 1.3 2.8E-05 51.7 11.9 116 53-182 412-531 (562)
90 TIGR03082 Gneg_AbrB_dup membra 91.9 2 4.3E-05 41.1 11.1 97 40-150 3-101 (156)
91 TIGR00698 conserved hypothetic 91.7 1.7 3.7E-05 46.9 11.6 103 34-146 218-331 (335)
92 COG2205 KdpD Osmosensitive K+ 91.2 0.57 1.2E-05 55.0 7.8 127 579-725 247-373 (890)
93 COG0475 KefB Kef-type K+ trans 91.0 9 0.0002 42.6 16.9 100 38-147 225-325 (397)
94 COG2985 Predicted permease [Ge 90.9 1.5 3.2E-05 48.6 10.0 118 44-184 16-146 (544)
95 COG2855 Predicted membrane pro 90.6 27 0.00059 37.4 26.0 103 50-169 31-133 (334)
96 TIGR03136 malonate_biotin Na+- 90.2 1 2.2E-05 48.1 7.8 132 270-414 103-237 (399)
97 PF03616 Glt_symporter: Sodium 89.3 17 0.00036 40.1 16.9 116 271-387 66-187 (368)
98 TIGR00210 gltS sodium--glutama 89.1 4.9 0.00011 44.6 12.6 167 35-211 222-393 (398)
99 cd01984 AANH_like Adenine nucl 88.6 1.4 3.1E-05 37.1 6.5 33 583-616 1-33 (86)
100 COG1346 LrgB Putative effector 88.0 32 0.00069 34.7 16.3 109 261-382 63-171 (230)
101 TIGR00946 2a69 he Auxin Efflux 87.7 15 0.00032 39.6 15.2 135 54-210 180-315 (321)
102 PF03977 OAD_beta: Na+-transpo 87.2 1.3 2.9E-05 46.7 6.2 112 271-390 68-181 (360)
103 PRK04972 putative transporter; 86.7 5.5 0.00012 46.4 11.7 132 37-182 386-526 (558)
104 TIGR00808 malonate_madM malona 86.5 6.2 0.00014 38.7 9.9 101 42-149 23-133 (254)
105 COG0786 GltS Na+/glutamate sym 85.3 19 0.0004 39.4 13.7 117 270-386 67-187 (404)
106 TIGR02432 lysidine_TilS_N tRNA 85.3 4.8 0.0001 39.6 9.1 37 582-618 1-37 (189)
107 PRK03818 putative transporter; 84.0 25 0.00053 41.0 15.4 106 59-178 403-513 (552)
108 PRK12460 2-keto-3-deoxyglucona 83.5 11 0.00025 39.9 11.1 75 59-146 169-243 (312)
109 PF05145 AmoA: Putative ammoni 83.2 7.5 0.00016 41.9 10.0 102 34-149 154-257 (318)
110 PRK04288 antiholin-like protei 81.9 64 0.0014 32.9 16.7 109 261-382 66-174 (232)
111 TIGR00932 2a37 transporter, mo 80.5 46 0.001 34.7 14.8 91 266-361 43-134 (273)
112 PRK03359 putative electron tra 80.3 6.6 0.00014 40.8 8.0 108 585-710 30-149 (256)
113 PRK05326 potassium/proton anti 79.5 8.3 0.00018 45.1 9.6 64 47-119 235-298 (562)
114 COG2855 Predicted membrane pro 78.6 12 0.00025 40.1 9.2 56 85-140 272-327 (334)
115 cd01992 PP-ATPase N-terminal d 78.6 10 0.00023 36.9 8.6 37 582-618 1-37 (185)
116 COG2431 Predicted membrane pro 78.6 49 0.0011 34.4 13.2 77 58-147 108-188 (297)
117 COG1346 LrgB Putative effector 77.1 67 0.0014 32.5 13.5 120 45-183 19-143 (230)
118 PRK15475 oxaloacetate decarbox 77.1 4.9 0.00011 43.0 5.8 131 271-414 133-270 (433)
119 PRK15477 oxaloacetate decarbox 76.3 5.3 0.00011 42.8 5.8 131 271-414 133-270 (433)
120 PRK15476 oxaloacetate decarbox 76.2 5.3 0.00011 42.8 5.8 131 271-414 133-270 (433)
121 PF03547 Mem_trans: Membrane t 75.7 42 0.0009 37.0 13.4 121 257-385 24-147 (385)
122 COG3180 AbrB Putative ammonia 75.3 12 0.00026 40.4 8.2 109 29-149 181-290 (352)
123 TIGR00659 conserved hypothetic 72.8 1.1E+02 0.0025 31.0 16.5 108 262-382 61-168 (226)
124 PF03601 Cons_hypoth698: Conse 71.4 39 0.00084 36.2 11.1 81 272-353 59-139 (305)
125 PF01171 ATP_bind_3: PP-loop f 70.8 13 0.00027 36.4 6.9 57 582-649 1-57 (182)
126 PRK06801 hypothetical protein; 70.6 17 0.00037 38.4 8.1 110 492-611 16-131 (286)
127 PF01012 ETF: Electron transfe 70.1 15 0.00032 35.2 7.1 27 591-617 15-41 (164)
128 PRK12342 hypothetical protein; 69.5 11 0.00023 39.2 6.2 35 584-619 28-62 (254)
129 PRK09903 putative transporter 68.9 87 0.0019 33.5 13.5 150 48-216 165-314 (314)
130 PRK05253 sulfate adenylyltrans 68.1 18 0.00039 38.6 7.8 41 581-621 28-68 (301)
131 cd01993 Alpha_ANH_like_II This 67.9 31 0.00067 33.4 9.1 38 582-619 1-40 (185)
132 COG2985 Predicted permease [Ge 67.5 20 0.00043 40.1 8.0 110 55-178 394-507 (544)
133 PRK10711 hypothetical protein; 66.9 1.5E+02 0.0034 30.2 15.0 106 264-382 64-169 (231)
134 TIGR01109 Na_pump_decarbB sodi 66.7 7 0.00015 41.3 4.1 113 270-390 61-181 (354)
135 PF05145 AmoA: Putative ammoni 66.2 1.9E+02 0.0042 31.1 26.5 73 279-354 214-287 (318)
136 PRK06806 fructose-bisphosphate 64.2 35 0.00076 36.0 8.9 112 491-611 15-131 (281)
137 TIGR02432 lysidine_TilS_N tRNA 62.6 41 0.00089 32.9 8.8 96 409-531 1-110 (189)
138 COG2086 FixA Electron transfer 62.3 24 0.00052 36.7 7.1 109 585-712 31-150 (260)
139 PRK08185 hypothetical protein; 61.0 33 0.00072 36.2 8.0 110 492-612 11-126 (283)
140 TIGR00844 c_cpa1 na(+)/h(+) an 60.8 1.9E+02 0.004 35.2 14.8 70 271-342 75-146 (810)
141 PF05982 DUF897: Domain of unk 59.2 69 0.0015 34.3 9.9 73 60-147 184-261 (327)
142 COG1883 OadB Na+-transporting 58.9 3.5 7.6E-05 42.5 0.3 130 271-414 83-214 (375)
143 TIGR02039 CysD sulfate adenyly 58.7 29 0.00064 36.8 7.2 55 582-649 21-75 (294)
144 PF01171 ATP_bind_3: PP-loop f 57.5 90 0.0019 30.4 10.1 95 409-530 1-106 (182)
145 PF00999 Na_H_Exchanger: Sodiu 57.1 3.8 8.3E-05 45.1 0.3 72 36-118 214-286 (380)
146 PRK12563 sulfate adenylyltrans 54.9 24 0.00051 37.8 5.7 43 581-623 38-80 (312)
147 PRK04288 antiholin-like protei 54.8 2.5E+02 0.0055 28.7 14.0 41 107-147 79-119 (232)
148 TIGR00831 a_cpa1 Na+/H+ antipo 54.5 1.1E+02 0.0025 35.3 11.8 72 271-344 52-124 (525)
149 TIGR02359 thiW thiW protein. L 54.0 2.1E+02 0.0045 27.5 12.9 48 58-110 34-84 (160)
150 COG1646 Predicted phosphate-bi 52.9 70 0.0015 32.5 8.2 85 495-593 15-100 (240)
151 COG0037 MesJ tRNA(Ile)-lysidin 52.9 1.1E+02 0.0024 32.3 10.6 57 580-649 21-77 (298)
152 COG3969 Predicted phosphoadeno 52.9 31 0.00067 36.9 6.0 39 579-617 26-65 (407)
153 KOG2310 DNA repair exonuclease 52.7 20 0.00044 40.4 4.9 59 507-568 39-100 (646)
154 PRK12857 fructose-1,6-bisphosp 52.7 46 0.001 35.1 7.5 112 492-612 16-132 (284)
155 COG3329 Predicted permease [Ge 52.4 1.9E+02 0.0041 30.7 11.4 71 297-367 71-141 (372)
156 PRK12737 gatY tagatose-bisphos 52.4 48 0.001 35.1 7.5 112 492-612 16-132 (284)
157 cd01992 PP-ATPase N-terminal d 51.7 74 0.0016 30.8 8.5 96 409-531 1-107 (185)
158 TIGR00783 ccs citrate carrier 51.4 1.3E+02 0.0029 32.6 10.7 95 48-148 195-292 (347)
159 KOG1288 Amino acid transporter 51.3 4.9E+02 0.011 31.0 21.3 121 381-531 537-663 (945)
160 PRK10660 tilS tRNA(Ile)-lysidi 50.7 96 0.0021 35.0 10.1 60 580-650 15-75 (436)
161 TIGR01521 FruBisAldo_II_B fruc 50.3 1.2E+02 0.0026 33.0 10.2 110 492-611 14-137 (347)
162 PF02355 SecD_SecF: Protein ex 48.4 2.8E+02 0.0061 27.3 15.5 18 235-252 172-189 (189)
163 cd06278 PBP1_LacI_like_2 Ligan 48.0 2.5E+02 0.0055 28.2 12.3 74 477-567 13-86 (266)
164 PF04172 LrgB: LrgB-like famil 47.7 3.1E+02 0.0068 27.7 15.0 108 262-382 51-158 (215)
165 TIGR01858 tag_bisphos_ald clas 47.4 64 0.0014 34.1 7.5 112 492-612 14-130 (282)
166 PF04172 LrgB: LrgB-like famil 46.0 3.3E+02 0.0072 27.5 16.4 86 109-207 65-150 (215)
167 PRK09195 gatY tagatose-bisphos 45.7 67 0.0015 33.9 7.3 111 492-612 16-132 (284)
168 PRK04125 murein hydrolase regu 45.3 1.8E+02 0.004 27.2 9.3 100 31-140 7-110 (141)
169 TIGR03082 Gneg_AbrB_dup membra 44.1 2.5E+02 0.0055 26.6 10.5 72 278-352 56-128 (156)
170 COG0679 Predicted permeases [G 43.1 4.4E+02 0.0096 28.1 16.2 180 22-212 121-307 (311)
171 PRK12569 hypothetical protein; 42.8 1.5E+02 0.0032 30.5 9.0 102 483-609 96-207 (245)
172 cd00947 TBP_aldolase_IIB Tagat 42.8 71 0.0015 33.6 7.0 111 492-612 11-127 (276)
173 PRK12738 kbaY tagatose-bisphos 41.7 91 0.002 33.0 7.6 110 492-611 16-131 (286)
174 PRK10696 tRNA 2-thiocytidine b 39.6 1.8E+02 0.0038 30.2 9.4 39 580-618 29-69 (258)
175 cd00946 FBP_aldolase_IIA Class 39.5 1E+02 0.0022 33.5 7.6 76 492-569 14-99 (345)
176 COG2035 Predicted membrane pro 38.3 4.9E+02 0.011 27.2 15.2 47 30-78 59-107 (276)
177 PF01884 PcrB: PcrB family; I 37.6 4.6E+02 0.01 26.8 16.0 91 498-604 10-108 (230)
178 PRK13399 fructose-1,6-bisphosp 37.6 1.1E+02 0.0024 33.2 7.6 112 492-612 16-140 (347)
179 PRK05835 fructose-bisphosphate 36.6 1.2E+02 0.0026 32.4 7.6 112 492-612 15-132 (307)
180 TIGR02057 PAPS_reductase phosp 36.0 1.5E+02 0.0033 30.1 8.1 40 581-623 26-65 (226)
181 PRK01658 holin-like protein; V 35.9 3.4E+02 0.0073 24.8 9.4 99 31-140 4-107 (122)
182 PF03652 UPF0081: Uncharacteri 35.8 68 0.0015 29.8 5.0 60 506-568 37-97 (135)
183 PF06939 DUF1286: Protein of u 35.7 75 0.0016 28.2 4.8 58 15-72 53-110 (114)
184 PRK09196 fructose-1,6-bisphosp 35.4 1.2E+02 0.0026 32.9 7.5 112 492-612 16-140 (347)
185 COG1540 Uncharacterized protei 35.2 1.2E+02 0.0026 30.8 6.7 108 483-610 93-207 (252)
186 TIGR01520 FruBisAldo_II_A fruc 34.9 1.5E+02 0.0032 32.4 8.0 89 478-569 12-111 (357)
187 KOG1650 Predicted K+/H+-antipo 34.5 3.8E+02 0.0083 32.7 12.3 40 408-450 615-654 (769)
188 TIGR00167 cbbA ketose-bisphosp 34.1 1.5E+02 0.0032 31.5 7.8 111 492-612 16-135 (288)
189 cd01993 Alpha_ANH_like_II This 33.6 2.6E+02 0.0056 26.8 9.1 38 409-447 1-38 (185)
190 TIGR01859 fruc_bis_ald_ fructo 33.6 2.1E+02 0.0045 30.2 8.8 109 493-610 15-130 (282)
191 PRK05406 LamB/YcsF family prot 33.6 3.1E+02 0.0067 28.3 9.6 105 483-609 93-206 (246)
192 cd01995 ExsB ExsB is a transcr 33.2 2.2E+02 0.0049 27.0 8.5 33 582-618 1-33 (169)
193 TIGR00840 b_cpa1 sodium/hydrog 32.9 2.8E+02 0.0061 32.4 10.5 73 36-112 239-311 (559)
194 PF03956 DUF340: Membrane prot 32.1 1.7E+02 0.0037 29.0 7.3 75 273-348 30-106 (191)
195 PF01507 PAPS_reduct: Phosphoa 32.1 1E+02 0.0022 29.3 5.8 51 582-649 1-51 (174)
196 COG0037 MesJ tRNA(Ile)-lysidin 31.7 3.7E+02 0.0079 28.2 10.6 37 407-448 21-57 (298)
197 KOG1278 Endosomal membrane pro 31.0 8.9E+02 0.019 28.1 16.4 30 257-287 485-514 (628)
198 PRK00109 Holliday junction res 30.8 1E+02 0.0022 28.7 5.3 58 508-568 42-99 (138)
199 PF02844 GARS_N: Phosphoribosy 30.6 45 0.00097 29.3 2.7 22 507-528 49-70 (100)
200 cd01713 PAPS_reductase This do 30.6 94 0.002 29.2 5.3 37 582-619 1-37 (173)
201 PRK07998 gatY putative fructos 30.1 1.5E+02 0.0033 31.2 7.0 109 493-611 17-131 (283)
202 cd01537 PBP1_Repressors_Sugar_ 29.7 5.4E+02 0.012 25.5 11.2 75 478-567 14-88 (264)
203 cd01536 PBP1_ABC_sugar_binding 29.7 4.3E+02 0.0094 26.4 10.5 73 478-566 14-88 (267)
204 PRK05812 secD preprotein trans 29.5 7.1E+02 0.015 28.7 12.8 24 125-148 358-381 (498)
205 COG3263 NhaP-type Na+/H+ and K 29.0 1.7E+02 0.0038 32.6 7.2 72 268-340 61-132 (574)
206 PRK09197 fructose-bisphosphate 28.8 2E+02 0.0043 31.3 7.7 88 479-569 7-104 (350)
207 PRK01821 hypothetical protein; 28.6 4.1E+02 0.0088 24.7 8.7 97 32-139 10-111 (133)
208 PF03812 KdgT: 2-keto-3-deoxyg 28.5 2.4E+02 0.0052 30.1 8.0 74 60-146 175-248 (314)
209 PF14362 DUF4407: Domain of un 28.3 7E+02 0.015 26.4 12.0 90 297-386 16-109 (301)
210 TIGR01625 YidE_YbjL_dupl AspT/ 28.3 2.6E+02 0.0057 26.6 7.7 63 266-328 51-116 (154)
211 TIGR00946 2a69 he Auxin Efflux 27.9 7.6E+02 0.016 26.3 27.9 115 260-382 203-319 (321)
212 PRK05274 2-keto-3-deoxyglucona 27.7 7.5E+02 0.016 26.7 11.9 44 103-146 207-250 (326)
213 cd00453 FTBP_aldolase_II Fruct 27.6 1.6E+02 0.0036 31.8 6.7 75 492-568 11-96 (340)
214 cd06320 PBP1_allose_binding Pe 27.6 5.1E+02 0.011 26.3 10.7 76 478-567 14-91 (275)
215 cd06274 PBP1_FruR Ligand bindi 27.2 4.3E+02 0.0093 26.6 10.0 109 478-615 14-123 (264)
216 PRK12933 secD preprotein trans 26.9 7.9E+02 0.017 29.0 12.5 56 125-183 465-522 (604)
217 COG4651 RosB Kef-type K+ trans 26.4 8.2E+02 0.018 26.2 14.6 59 52-121 244-302 (408)
218 COG1380 Putative effector of m 26.4 4.2E+02 0.0092 24.4 8.3 102 30-140 4-108 (128)
219 COG0385 Predicted Na+-dependen 26.4 5.4E+02 0.012 27.7 10.3 105 272-382 41-149 (319)
220 PRK07315 fructose-bisphosphate 26.2 2E+02 0.0043 30.6 7.2 110 492-611 16-133 (293)
221 TIGR00793 kdgT 2-keto-3-deoxyg 26.1 7.8E+02 0.017 26.3 11.1 75 59-146 174-248 (314)
222 cd01986 Alpha_ANH_like Adenine 26.1 2.5E+02 0.0053 24.3 6.7 32 583-618 1-32 (103)
223 PRK08610 fructose-bisphosphate 25.9 2.3E+02 0.005 30.0 7.5 111 493-612 17-135 (286)
224 PF02601 Exonuc_VII_L: Exonucl 25.8 1.2E+02 0.0027 32.4 5.7 49 638-687 28-85 (319)
225 TIGR00342 thiazole biosynthesi 25.7 1.9E+02 0.0041 31.8 7.2 40 576-619 168-207 (371)
226 cd04740 DHOD_1B_like Dihydroor 25.5 8E+02 0.017 25.7 11.9 68 638-710 219-292 (296)
227 COG0816 Predicted endonuclease 24.8 1.7E+02 0.0037 27.5 5.6 56 508-566 41-96 (141)
228 cd06319 PBP1_ABC_sugar_binding 24.6 7.4E+02 0.016 25.0 12.2 74 478-567 14-89 (277)
229 TIGR02230 ATPase_gene1 F0F1-AT 24.3 1.7E+02 0.0036 25.8 5.0 39 131-169 51-89 (100)
230 COG3371 Predicted membrane pro 24.2 4.6E+02 0.01 25.6 8.4 62 53-126 73-134 (181)
231 PRK10711 hypothetical protein; 24.1 7.9E+02 0.017 25.1 12.2 39 109-147 76-114 (231)
232 PRK07709 fructose-bisphosphate 24.1 2.6E+02 0.0055 29.7 7.4 112 492-612 16-135 (285)
233 PF03746 LamB_YcsF: LamB/YcsF 23.9 1.7E+02 0.0036 30.1 5.8 104 483-608 91-203 (242)
234 cd06301 PBP1_rhizopine_binding 23.8 3.7E+02 0.0079 27.3 8.7 112 478-615 14-130 (272)
235 PRK08578 preprotein translocas 23.3 5.5E+02 0.012 27.2 9.9 20 234-253 270-289 (292)
236 KOG2718 Na+-bile acid cotransp 23.2 1.3E+02 0.0028 33.0 5.2 47 99-146 117-163 (371)
237 PF03686 UPF0146: Uncharacteri 23.2 1.5E+02 0.0032 27.3 4.6 36 498-533 73-108 (127)
238 PF01116 F_bP_aldolase: Fructo 22.7 67 0.0014 34.0 2.8 110 493-612 16-131 (287)
239 PF10136 SpecificRecomb: Site- 22.5 2E+02 0.0043 34.1 6.8 27 20-47 460-486 (643)
240 PRK07084 fructose-bisphosphate 22.2 2.6E+02 0.0056 30.1 7.0 115 492-612 22-143 (321)
241 PF03547 Mem_trans: Membrane t 22.0 1E+03 0.022 25.8 13.4 64 49-118 237-300 (385)
242 PRK02261 methylaspartate mutas 22.0 6.4E+02 0.014 23.3 9.1 112 482-605 20-135 (137)
243 COG1570 XseA Exonuclease VII, 21.8 1.3E+02 0.0028 33.7 4.7 50 638-687 149-203 (440)
244 COG4605 CeuC ABC-type enteroch 21.3 1.1E+02 0.0024 32.0 3.9 56 32-88 103-158 (316)
245 COG3199 Predicted inorganic po 21.0 3.7E+02 0.008 29.1 7.7 99 596-714 34-138 (355)
246 PRK04148 hypothetical protein; 20.8 1.4E+02 0.0031 27.7 4.2 33 501-533 83-115 (134)
247 KOG2805 tRNA (5-methylaminomet 20.4 3.2E+02 0.0069 29.2 6.9 45 639-687 85-129 (377)
248 cd06310 PBP1_ABC_sugar_binding 20.3 6.9E+02 0.015 25.2 10.0 49 478-527 14-64 (273)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=7.8e-136 Score=1205.34 Aligned_cols=717 Identities=52% Similarity=0.914 Sum_probs=645.9
Q ss_pred CCCCCCcCCCCCcccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCchhhhhhccCC
Q 004461 7 ACPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFP 86 (752)
Q Consensus 7 ~c~~~~~~~~~~~~~~~~pl~~~~~~~l~~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp 86 (752)
+|+.+.+.+|+|+|+|+||++|++|++++|+++++++++++++++||+|||+++|||++|+++||+++|++..+.+.+||
T Consensus 18 ~c~~~~~~~s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp 97 (832)
T PLN03159 18 VCYAPMMITTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFP 97 (832)
T ss_pred ccccCCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCC
Confidence 59965578999999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhccChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHH
Q 004461 87 PKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVA 166 (752)
Q Consensus 87 ~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ 166 (752)
.++.+.+++++++|++|+||++|+|+|++.+|+++|+++.+|++++++|+++|+++++++.. ...........+++|++
T Consensus 98 ~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~-~~~~~~~~~~~l~~g~a 176 (832)
T PLN03159 98 LRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQ-VSRNVHQGTFILFLGVA 176 (832)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccchhHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999988887743 21112222457899999
Q ss_pred HhhccHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 004461 167 LSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTF 246 (752)
Q Consensus 167 ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~~~~~ 246 (752)
+|.||+|+++++|+|+|+++++.||+++++++++|+++|++++++..+...+......+|.++..+++++++.+++||++
T Consensus 177 lS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l~~~l~~~~f~~~~~~v~r~~~ 256 (832)
T PLN03159 177 LSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVVRPGI 256 (832)
T ss_pred HHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876654443334566777778888889999999999
Q ss_pred HHHHHhcCC-------------------------------------------CchHHHHHHHHHHHHHHhhHHHHHHHhh
Q 004461 247 KWMARQCHE-------------------------------------------GPFANALVEKVEDLVSGIFLPLYFVSSG 283 (752)
Q Consensus 247 ~~~~~~~~e-------------------------------------------g~~~~~l~~kl~~~~~~~~~piFFv~~G 283 (752)
.|+.++.++ +++++.+.+|++++++++|+|+||+++|
T Consensus 257 ~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~~~l~ekle~~~~~lflPlFFv~vG 336 (832)
T PLN03159 257 WWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEKLEDFVSGLLLPLFFAISG 336 (832)
T ss_pred HHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999998743 3567899999999999999999999999
Q ss_pred ccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCCHHHHHH
Q 004461 284 LKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAI 363 (752)
Q Consensus 284 l~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~l~~~~~~~~~i~~~~~~~ 363 (752)
+++|+..+.+...|..+++++++++++|+++++++++++|+|++|++.+|++|++||++++++++++.+.|+++++.|++
T Consensus 337 l~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f~~ 416 (832)
T PLN03159 337 LKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAV 416 (832)
T ss_pred heeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchhhhH
Confidence 99999888754456666777888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhhhhhhccccccccccCCCCCcceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEE
Q 004461 364 MILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYA 443 (752)
Q Consensus 364 lv~~~lv~t~i~~pl~~~l~~~~~~~~~~~~~~~~i~~~~~~~e~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~ 443 (752)
++++++++|.+++|++.++|+|+||+. .|++|++|+.++++|+|||+|+|++++++.++++++.++++ +++|.++|+
T Consensus 417 lVl~avl~T~i~~Plv~~ly~p~rk~~--~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t-~~sp~~vy~ 493 (832)
T PLN03159 417 MVLVAVAMTALITPVVTVVYRPARRLV--GYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPT-KRSPICIYV 493 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhc--cccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCC-CCCCceEEE
Confidence 999999999999999999999999998 99999999999999999999999999999999999999999 999999999
Q ss_pred EEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHHHHHhhhc-cceEEEEeEEecCCCChHHHHHHHHHhcCcc
Q 004461 444 LHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAFQQL-SRVSVRPMTAISSMSDMHEDICTTAESKRAA 522 (752)
Q Consensus 444 Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~v~v~~~~~v~~~~~~~~~I~~~A~e~~ad 522 (752)
+|++|+++|+++.+++|+.+++..+..++ ...++++++++|+.|+++ ++++++++++++|+++||+|||+.|+|++++
T Consensus 494 lhLveL~~r~~~~l~~h~~~~~~~~~~~~-~~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~s 572 (832)
T PLN03159 494 LHLVELTGRASAMLIVHNTRKSGRPALNR-TQAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVS 572 (832)
T ss_pred EEEEeecCCCccceeeeeccccccccccc-ccccccHHHHHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCCC
Confidence 99999999999999999865433321111 124579999999999976 5899999999999999999999999999999
Q ss_pred EEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEecCCCCCCcccccCCcceEEEEEccCCcchHHHHHHHHH
Q 004461 523 IIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGAR 602 (752)
Q Consensus 523 LIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv~rg~~~~~~~~~~~~~~~I~v~~~gg~ddreAL~~a~~ 602 (752)
+||+|||++|+.||.+++.+..+|.+|++||++||||||||||||..+..+.......+||+++|.|||||||||+||+|
T Consensus 573 lIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~~~~~~~~v~~~F~GG~DDREALa~a~r 652 (832)
T PLN03159 573 LIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLASNQVSHHVAVLFFGGPDDREALAYAWR 652 (832)
T ss_pred EEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCccccccccccceeEEEEecCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999976433334445678999999999999999999999
Q ss_pred HhhCCCeEEEEEEEeecccccCCcc--------------ccCCcCccccHHHHHHHHHhhcCCCCCeEEEEEEecChHHH
Q 004461 603 MAEHPGISFIVIRFLLAADAIGNTV--------------SVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAET 668 (752)
Q Consensus 603 ma~~~~~~ltvl~v~~~~~~~~~~~--------------~~~~~~~~~~d~~~l~e~~~~~~~~~~v~~~e~~v~~g~~~ 668 (752)
||+||++++||+||++.++...+.+ ..++++|+++||++++||+.++..++++.|.|++|+||+|+
T Consensus 653 ma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~E~~V~~~~e~ 732 (832)
T PLN03159 653 MSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEKVVSNGEET 732 (832)
T ss_pred HhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEEEEEecCCHHHH
Confidence 9999999999999997644321000 01235688899999999999988888999999999999999
Q ss_pred HHHHHhccC-CCEEEEccCC--CccccccccCCCCCCccccchhhhccCCCCc-eeEEEEEeec
Q 004461 669 IAVIREVSR-CNLLLVGRMP--DGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQQYS 728 (752)
Q Consensus 669 ~~~i~~~~~-~DLiivG~~~--~~~~~~gl~~w~e~peLG~igd~las~~~~~-~svLvvqq~~ 728 (752)
++++|++++ |||++|||+| ++++++||+||+||||||+|||+|||+||++ +||||||||+
T Consensus 733 ~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~~ 796 (832)
T PLN03159 733 VAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQYV 796 (832)
T ss_pred HHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCceeEEEEEeec
Confidence 999999998 9999999988 5899999999999999999999999999999 9999999998
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-109 Score=963.49 Aligned_cols=709 Identities=50% Similarity=0.779 Sum_probs=637.1
Q ss_pred CCcCCCCCcccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCch
Q 004461 11 PMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQ 90 (752)
Q Consensus 11 ~~~~~~~~~~~~~~pl~~~~~~~l~~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~ 90 (752)
+.+.++.|+|+|+||++|++|++++|+++++++++++++++||+|||+++++|++||++||+.+|++..+.+.+||.++.
T Consensus 2 ~~~~~~~g~~~~~~~~~~~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~ 81 (769)
T KOG1650|consen 2 WVKATSNGVFPGVNPLKYALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSM 81 (769)
T ss_pred CCccccCCcccCCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhhhhccC-Cc---hhHHHHHHHHH
Q 004461 91 TVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKG-VD---STSFLVFMGVA 166 (752)
Q Consensus 91 ~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~-~~---~~~~~l~l~~~ 166 (752)
..+++++.+|+++++|+.|+|+|.+.+++++|++..+|++++++|++.|.++...+....... +. ...+..++..+
T Consensus 82 ~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (769)
T KOG1650|consen 82 IVLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSA 161 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888877764332211 11 11256788899
Q ss_pred HhhccHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHHHHHHHHHHHHHH
Q 004461 167 LSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQ-SSLVPVWVFLSGCVFVICLTLFVPPT 245 (752)
Q Consensus 167 ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~v~~~~ 245 (752)
++.||||+++++|.|+|++++++||+++++++++|+.+|.++.+...+..... ++....|.+...+++.+++.++++|+
T Consensus 162 ~s~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~p~ 241 (769)
T KOG1650|consen 162 QSITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLVIGFVLFLFFVVRPL 241 (769)
T ss_pred hhcchhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHheeeehhhh
Confidence 99999999999999999999999999999999999999998887777665443 35567888889899999999999999
Q ss_pred HHHHHHhcCC---------------------------------------------CchHHHHHHHHHHHHHHhhHHHHHH
Q 004461 246 FKWMARQCHE---------------------------------------------GPFANALVEKVEDLVSGIFLPLYFV 280 (752)
Q Consensus 246 ~~~~~~~~~e---------------------------------------------g~~~~~l~~kl~~~~~~~~~piFFv 280 (752)
+.|+.+|+|| ||+++.+.+|+|++.+++|+|+||+
T Consensus 242 ~~wi~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~ 321 (769)
T KOG1650|consen 242 MKWIIKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFA 321 (769)
T ss_pred HHHHhhcCCCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999986 5789999999999999999999999
Q ss_pred HhhccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCCHHH
Q 004461 281 SSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQV 360 (752)
Q Consensus 281 ~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~l~~~~~~~~~i~~~~ 360 (752)
.+|+++|+..+.. |......+....++|++++..++.++|+|++|++.+|++|++||.++++.++.+.+.+.++.+.
T Consensus 322 ~~G~k~di~~i~~---~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~ 398 (769)
T KOG1650|consen 322 ISGLKTDISRINK---WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEG 398 (769)
T ss_pred hhccceeHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccch
Confidence 9999999998874 7777888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhhhhhccccccccccCCCCCcceEEEEeecCCChhHHHHHHHHhcCCCCCCCce
Q 004461 361 FAIMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLC 440 (752)
Q Consensus 361 ~~~lv~~~lv~t~i~~pl~~~l~~~~~~~~~~~~~~~~i~~~~~~~e~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~ 440 (752)
|++++++++++|.+++|+++.+|+|.+++. .|++|++|+.+++.++|||.|++++++.+.++++++++.++ +++|..
T Consensus 399 f~~~vl~alv~t~I~~~~l~~~y~p~~~~~--~y~~~~i~~~~~~~~Lril~cl~~~~~is~~i~~le~~~~~-~~~p~~ 475 (769)
T KOG1650|consen 399 FTVMVLMALVSTFITPPLLMFLYDPTRKYH--GYKKRGIQHLKPNSELRILTCLHGPENISGIINLLELSSGS-LESPLS 475 (769)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhcchhhhcC--ceEeehhhhcCCCCceEEEEEecCCCcchHHHHHHHHcCCC-CCCCcc
Confidence 999999999999999999999999999999 89999999999999999999999999999999999999988 667999
Q ss_pred EEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHHHHHhhhc--cceEEEEeEEecCCCChHHHHHHHHHh
Q 004461 441 VYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAFQQL--SRVSVRPMTAISSMSDMHEDICTTAES 518 (752)
Q Consensus 441 v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~v~v~~~~~v~~~~~~~~~I~~~A~e 518 (752)
++++|++|+.+|+.|++++|..++++.... ++..++++..+|+.|.+. .++.++++++++|+.+||||||..|.+
T Consensus 476 v~~lhlveL~~~~~~~li~h~~~~~~~~~~---~s~~~~~i~~aF~~f~~~~~~~v~v~~~Ta~s~~~~m~edic~la~~ 552 (769)
T KOG1650|consen 476 VYALHLVELVGRATPLLISHKLRKNGRVES---RSSSSDQINVAFEAFEKLSQEGVMVRTFTALSPEKLMHEDICTLALD 552 (769)
T ss_pred eeeeeeeecccccchhhhhhhhcccccccc---ccccchhhHHHHHHHHHhcCCcEEEEeehhhCChhhchhhhhHHHHh
Confidence 999999999999999999998766632211 124567889999999883 689999999999999999999999999
Q ss_pred cCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEecCCCCCCcccccCCcceEEEEEccCCcchHHHHH
Q 004461 519 KRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALA 598 (752)
Q Consensus 519 ~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv~rg~~~~~~~~~~~~~~~I~v~~~gg~ddreAL~ 598 (752)
++.++|++|+|++|+.++.+++.+..+|++|++|+++|||||||++|||.......+.....++|++.|.||+||||||+
T Consensus 553 ~~~~liilpfhk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg~~~~~~~~~~~~~~~v~~lF~GG~DDrEALa 632 (769)
T KOG1650|consen 553 KGVSLIILPFHKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRGLRRSGVTQKRGSSYKVVVLFLGGKDDREALA 632 (769)
T ss_pred hCCcEEEeehhhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecCcccccceecccceeEEEEEecCChhhHHHHH
Confidence 99999999999999966689999999999999999999999999999983211111223367899999999999999999
Q ss_pred HHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHH-HhhcCCCCCeEEE-EEEecChHHHHHHHHhcc
Q 004461 599 CGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEF-KLKTSRNGSVRYE-ERLVRNTAETIAVIREVS 676 (752)
Q Consensus 599 ~a~~ma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~~~~d~~~l~e~-~~~~~~~~~v~~~-e~~v~~g~~~~~~i~~~~ 676 (752)
+++||++|+++++||+|++++++... +....++++..|++..+++ +.....+.++.|. |+.+.++.||.++++++.
T Consensus 633 ~~~rm~~~~~v~lTVirf~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ek~v~~~~et~~~~~~~~ 710 (769)
T KOG1650|consen 633 LAKRMAENPRVTLTVIRFFPDESKYN--RKVLVEVGKMLDQEGLEDFVKSTRESNLDIIYAEEKIVLNGAETTALLRSIT 710 (769)
T ss_pred HHHHHhhCCceEEEEEEeeccchhhc--ccccchhhhhhhhhHHHHHHHHhhhchhhhhhhhHHHHhcchhHHHHHHHhc
Confidence 99999999999999999998655430 0002367778888888887 6555556677788 699999999999999999
Q ss_pred C-CCEEEEccCC--CccccccccCCCCCCccccchhhhccCCCCc-eeEEEEEeeccc
Q 004461 677 R-CNLLLVGRMP--DGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQQYSDR 730 (752)
Q Consensus 677 ~-~DLiivG~~~--~~~~~~gl~~w~e~peLG~igd~las~~~~~-~svLvvqq~~~~ 730 (752)
+ |||++|||.+ +++.++|+++|+||||||+|||.|+|+||++ .||||+|||...
T Consensus 711 ~~ydL~ivGr~~~~~~~~t~gl~~W~e~pELg~IGd~las~~~~~~~svlvvqq~~~~ 768 (769)
T KOG1650|consen 711 EDYDLFIVGRSHGMLSEATGGLSEWSECPELGVIGDLLASSDFSSKVSVLVVQQQLYS 768 (769)
T ss_pred cccceEEEecccccccchhcCchhcccCccccccCccccccccCccceEEEEEeeecC
Confidence 8 9999999998 8899999999999999999999999999988 999999999764
No 3
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=1.5e-41 Score=393.09 Aligned_cols=364 Identities=20% Similarity=0.298 Sum_probs=293.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 004461 31 PLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGL 110 (752)
Q Consensus 31 ~~~l~~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gl 110 (752)
+.+++++.+++.++.++..++||+|+|+++|||++|+++||+++|++. ..+.++.++++|++|+||.+|+
T Consensus 4 ~~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~----------~~~~i~~laelGvv~LlF~iGL 73 (621)
T PRK03562 4 SHTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT----------DVESILHFAEFGVVLMLFVIGL 73 (621)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCC----------CHHHHHHHHHHHHHHHHHHHHh
Confidence 358899999999999999999999999999999999999999999864 3456899999999999999999
Q ss_pred ccChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCchH
Q 004461 111 ELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVG 190 (752)
Q Consensus 111 e~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~g 190 (752)
|+|++.+|+.+|+++.+|..++++|+++++.++++++. +| ..++++|.+++.||++++.++|+|+|+++++.|
T Consensus 74 El~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~----~~---~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G 146 (621)
T PRK03562 74 ELDPQRLWKLRRSIFGGGALQMVACGGLLGLFCMLLGL----RW---QVALLIGLGLALSSTAIAMQAMNERNLMVTQMG 146 (621)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CH---HHHHHHHHHHHHHHHHHHHHHHHHhccccCchH
Confidence 99999999999999999999999999888877776653 23 568899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ChhHHH-HH----HHHHHHHHHHHHHHHHHHHHHHHhc-CC--------
Q 004461 191 RMAMSAAAVNDVAAWILLALAVALSGSGQS-SLVPVW-VF----LSGCVFVICLTLFVPPTFKWMARQC-HE-------- 255 (752)
Q Consensus 191 ~l~l~~a~i~D~~~~~ll~v~~~~~~~~~~-~~~~~~-~~----~~~v~~~~~~~~v~~~~~~~~~~~~-~e-------- 255 (752)
|.++++++++|+.+|++++++..+...+.. .....| .. +..++++++..++.+|+++|+.++. +|
T Consensus 147 ~~~l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~e~~~~~~l~ 226 (621)
T PRK03562 147 RSAFAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARSGLREVFTAVALF 226 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 999999999999999999887665542211 111222 11 2222333445667888888887754 34
Q ss_pred -----------------------------CchHHHHHHHHHHHHHHhhHHHHHHHhhccccchhhchhhhHHHHHHHHHH
Q 004461 256 -----------------------------GPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILT 306 (752)
Q Consensus 256 -----------------------------g~~~~~l~~kl~~~~~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~~~~ 306 (752)
.++++.++++++++ .++|+|+||+++||++|+..+.. .|+.++.++++
T Consensus 227 lv~~~a~la~~~Gls~~lGAFlAGl~l~~~~~~~~le~~i~pf-~~lll~lFFi~vG~~id~~~l~~--~~~~il~~~~~ 303 (621)
T PRK03562 227 LVFGFGLLMEEVGLSMALGAFLAGVLLASSEYRHALESDIEPF-KGLLLGLFFIAVGMSIDFGTLLE--NPLRILILLLG 303 (621)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHhcCCccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHHH--HHHHHHHHHHH
Confidence 35678899999999 79999999999999999988764 34445566667
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 004461 307 ACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPA 386 (752)
Q Consensus 307 ~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~l~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~pl~~~l~~~~ 386 (752)
.+++|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.+++++ +.|++.+|++..++++.
T Consensus 304 ~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v-~lS~~~tP~l~~~~~~~ 382 (621)
T PRK03562 304 FLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAV-ALSMAATPLLLVLLDRL 382 (621)
T ss_pred HHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHH-HHHHHHHHHHHHhhhHH
Confidence 89999999999999999999999999999999999999999999999999999999998755 55777888887777654
Q ss_pred hhhhhccccccccccCCCCCcceEEEEeecCC
Q 004461 387 RRARVADYKHRTVERKNSKAQFRILACFHSAR 418 (752)
Q Consensus 387 ~~~~~~~~~~~~i~~~~~~~e~rILv~v~~s~ 418 (752)
.... ..+.+. +...++.+.|+++|-+|.-
T Consensus 383 ~~~~--~~~~~~-~~~~~~~~~~vII~G~Gr~ 411 (621)
T PRK03562 383 EQSR--TEEARE-ADEIDEQQPRVIIAGFGRF 411 (621)
T ss_pred HHHH--hhhccc-ccccccccCcEEEEecChH
Confidence 2111 001111 1111223578998887654
No 4
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=9.8e-41 Score=385.13 Aligned_cols=374 Identities=21% Similarity=0.242 Sum_probs=291.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q 004461 33 AILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLEL 112 (752)
Q Consensus 33 ~l~~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~ 112 (752)
++..+.++++++.+++.++||+|+|+++|||++|+++||+++|.+. ..+.++.++++|++|+||.+|+|+
T Consensus 7 ~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~----------~~~~~~~la~lGli~llF~~Gle~ 76 (558)
T PRK10669 7 LITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVA----------DTKLAPELAELGVILLMFGVGLHF 76 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCcccccccc----------chHHHHHHHHHHHHHHHHHhHhcC
Confidence 3556788899999999999999999999999999999999998753 236789999999999999999999
Q ss_pred ChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCchHHH
Q 004461 113 DPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRM 192 (752)
Q Consensus 113 d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~g~l 192 (752)
|++.+|+.++..+..++.++++|+.+++++++.++. +. ..++++|++++.||+++++++|+|+|+++++.||+
T Consensus 77 d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~ 149 (558)
T PRK10669 77 SLKDLMAVKSIAIPGAIAQIAVATLLGMALSAVLGW------SL-MTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQI 149 (558)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCC------CH-HHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHH
Confidence 999999998877777888888998888877666642 22 56888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC---CCCCh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----C----
Q 004461 193 AMSAAAVNDVAAWILLALAVALSGS---GQSSL-----VPVWVFLSGCVFVICLTLFVPPTFKWMARQCH-----E---- 255 (752)
Q Consensus 193 ~l~~a~i~D~~~~~ll~v~~~~~~~---~~~~~-----~~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~-----e---- 255 (752)
++++++++|+.+|+++.++..+... +.... ...+.++..++++++..++.|++..|+.++.+ |
T Consensus 150 ~l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l 229 (558)
T PRK10669 150 AIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATGSRELFTL 229 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHH
Confidence 9999999999999998877654421 11111 12344455666667777888888888876542 2
Q ss_pred ----------------------------------CchHHHHHHHHHHHHHHhhHHHHHHHhhccccchhhchhhhHHHHH
Q 004461 256 ----------------------------------GPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLA 301 (752)
Q Consensus 256 ----------------------------------g~~~~~l~~kl~~~~~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~ 301 (752)
.++++.+.+...++ .++|+|+||+++|+++|+..+.. .+...+
T Consensus 230 ~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~~~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l~~--~~~~~~ 306 (558)
T PRK10669 230 SVLALALGIAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMILIQ--QPLAVL 306 (558)
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhCChhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHHHH--HHHHHH
Confidence 23445555566666 68999999999999999988764 333445
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 004461 302 LVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMA 381 (752)
Q Consensus 302 ~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~l~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~pl~~~ 381 (752)
.++++.+++|++++++.++++|+++|+++.+|++|++||+++++++..+.+.|+++++.|+.++++++++++++|++.++
T Consensus 307 ~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~ 386 (558)
T PRK10669 307 ATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTL 386 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677899999999999999999999999999999999999999999999999999999999988888877776666666
Q ss_pred Hhchhhhhhhccccc---ccccc---CCCCCcceEEEEeecCCChhHHHHHHHHhc
Q 004461 382 VYKPARRARVADYKH---RTVER---KNSKAQFRILACFHSARNIPSTINLLEALR 431 (752)
Q Consensus 382 l~~~~~~~~~~~~~~---~~i~~---~~~~~e~rILv~v~~s~~~~~~i~la~~la 431 (752)
..+..++... ..++ +..++ .+++.+.++++|-.+.- .. ++++.+.
T Consensus 387 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~hiiI~G~G~~-G~---~la~~L~ 437 (558)
T PRK10669 387 LERYLAKTET-LEEQTLEEAIEEEKQIPVDICNHALLVGYGRV-GS---LLGEKLL 437 (558)
T ss_pred hhHHHHHhhh-ccccccccccccccccccccCCCEEEECCChH-HH---HHHHHHH
Confidence 5544333220 1111 11111 12233578888877543 22 3555555
No 5
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=2.7e-40 Score=382.09 Aligned_cols=363 Identities=19% Similarity=0.309 Sum_probs=289.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q 004461 33 AILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLEL 112 (752)
Q Consensus 33 ~l~~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~ 112 (752)
++.++.+++.++.++..+++|+|+|+++|||++|+++||+++|.++ ..+.+..++++|++++||.+|+|+
T Consensus 6 ~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~----------~~~~i~~laelGvv~LLF~iGLel 75 (601)
T PRK03659 6 LLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFIS----------DVDEILHFSELGVVFLMFIIGLEL 75 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCC----------cHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5678888999999999999999999999999999999999999864 335688999999999999999999
Q ss_pred ChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCchHHH
Q 004461 113 DPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRM 192 (752)
Q Consensus 113 d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~g~l 192 (752)
|++.+|+.+|+++.+|..++++|+++++++.++++. +| ..++++|++++.||++++.++|+|+|+++++.||+
T Consensus 76 ~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~g~----~~---~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~ 148 (601)
T PRK03659 76 NPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLTDF----SW---QAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQL 148 (601)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----CH---HHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHH
Confidence 999999999999999999999998777666555432 23 56888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCC--h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-------------
Q 004461 193 AMSAAAVNDVAAWILLALAVALSGSGQSS--L-VPVWVFLSGCVFVICLTLFVPPTFKWMARQC-HE------------- 255 (752)
Q Consensus 193 ~l~~a~i~D~~~~~ll~v~~~~~~~~~~~--~-~~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~-~e------------- 255 (752)
+++.++++|+.++++++++..+....... + ...+.++..++++++..++.+|+++|+.+.. +|
T Consensus 149 ~l~vll~~Di~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~vl~~ 228 (601)
T PRK03659 149 GFSVLLFQDLAVIPALALVPLLAGSADEHFDWMKIGMKVLAFAGMLIGGRYLLRPLFRFIAASGVREVFTAAALLLVLGS 228 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 99999999999999998776655432221 1 1111122233333445577788888886653 34
Q ss_pred ------------------------CchHHHHHHHHHHHHHHhhHHHHHHHhhccccchhhchhhhHHHHHHHHHHHHHHH
Q 004461 256 ------------------------GPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGK 311 (752)
Q Consensus 256 ------------------------g~~~~~l~~kl~~~~~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K 311 (752)
.++++.++++++++ .++|+|+||+++||++|+..+.. .|..++.++++.+++|
T Consensus 229 a~l~~~~Gls~~LGAFlaGl~l~~s~~~~~l~~~i~pf-~~lll~lFFi~vGm~id~~~l~~--~~~~il~~~~~~l~~K 305 (601)
T PRK03659 229 ALFMDALGLSMALGTFIAGVLLAESEYRHELEIAIEPF-KGLLLGLFFISVGMALNLGVLYT--HLLWVLISVVVLVAVK 305 (601)
T ss_pred HHHHHHhCccHHHHHHHHHHHhcCCchHHHHHHHHHHH-HHHHHHHHHHHHhhhccHHHHHH--hHHHHHHHHHHHHHHH
Confidence 34678888999998 69999999999999999988864 4555666777788999
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhch--hhhh
Q 004461 312 IVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKP--ARRA 389 (752)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~l~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~pl~~~l~~~--~~~~ 389 (752)
++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.+++++++ |++.+|++..++++ .+++
T Consensus 306 ~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~l-s~~~tP~l~~~~~~~~~~~~ 384 (601)
T PRK03659 306 GLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTL-SMMTTPLLMKLIDKWLARRL 384 (601)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999666655 66778888887766 3333
Q ss_pred hhccccccccccCCCCCcceEEEEeecCC
Q 004461 390 RVADYKHRTVERKNSKAQFRILACFHSAR 418 (752)
Q Consensus 390 ~~~~~~~~~i~~~~~~~e~rILv~v~~s~ 418 (752)
.. ..+.+..+ ...+.+.++++|-.|.-
T Consensus 385 ~~-~~~~~~~~-~~~~~~~~vII~G~Gr~ 411 (601)
T PRK03659 385 NG-PEEEDEKP-WVEDDKPQVIIVGFGRF 411 (601)
T ss_pred cc-cccccccc-ccccccCCEEEecCchH
Confidence 20 10110101 11123568888876543
No 6
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-38 Score=344.37 Aligned_cols=338 Identities=29% Similarity=0.550 Sum_probs=277.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 004461 32 LAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLE 111 (752)
Q Consensus 32 ~~l~~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle 111 (752)
..+.|+.++++++.++++++||+|+|+++||+++|+++||.+++.. .++.+.++.++++|++|+||.+|+|
T Consensus 6 ~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~---------~~~~~~i~~laelGvi~LlF~~GLE 76 (397)
T COG0475 6 LILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLI---------IESSEIIELLAELGVVFLLFLIGLE 76 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCccccccc---------CCchHHHHHHHHHhHHHHHHHHHHC
Confidence 5788999999999999999999999999999999999999555433 3467889999999999999999999
Q ss_pred cChhhHHhcCch-hhHHHHHHHHHHHHHHHHHHHH-hhhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCch
Q 004461 112 LDPKSLRQTGKK-ALGIAIAGISLPFALGIGSSFL-LRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADV 189 (752)
Q Consensus 112 ~d~~~l~~~~~~-~~~i~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~ 189 (752)
+|++++|+++|+ +...+..++..|++++....+. ++. ++ ..++++|.+++.||+++++++|+|+|.++++.
T Consensus 77 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~----~~---~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~ 149 (397)
T COG0475 77 FDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGL----SL---IAALFLGAALALSSTAIVLKILMELGLLKTRE 149 (397)
T ss_pred cCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhcc----Ch---HHHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 999999999999 8888888888888877544443 322 22 56999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChh-HHHHHHHHHHHHHHH----HHHHHHHHHHHHHhc-CC--------
Q 004461 190 GRMAMSAAAVNDVAAWILLALAVALSGSGQSSLV-PVWVFLSGCVFVICL----TLFVPPTFKWMARQC-HE-------- 255 (752)
Q Consensus 190 g~l~l~~a~i~D~~~~~ll~v~~~~~~~~~~~~~-~~~~~~~~v~~~~~~----~~v~~~~~~~~~~~~-~e-------- 255 (752)
|++++++++++|+.++++++++..+..++..... .+..+....++.++. .++.+|+.+|+.+.. +|
T Consensus 150 g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~~~~e~~~~~~l~ 229 (397)
T COG0475 150 GQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKTESSELFILFVLL 229 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 9999999999999999999988887765443222 233333333333333 355566666666633 33
Q ss_pred ------------------C-----------chH-HHHHHHHHHHHHHhhHHHHHHHhhccccchhhchhhhHHHHHHHHH
Q 004461 256 ------------------G-----------PFA-NALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVIL 305 (752)
Q Consensus 256 ------------------g-----------~~~-~~l~~kl~~~~~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~~~ 305 (752)
| ..+ ++++++++++.+++|+|+||+.+|+++|+..+.. .+....+++.
T Consensus 230 i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~--~~~~~l~~~~ 307 (397)
T COG0475 230 LVLGAAYLAELLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLE--NLLLILLLVA 307 (397)
T ss_pred HHHHHHHHHHHhChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhc--cHHHHHHHHH
Confidence 1 245 6899999999877999999999999999999985 4555778888
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 004461 306 TACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKP 385 (752)
Q Consensus 306 ~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~l~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~pl~~~l~~~ 385 (752)
+..++|.+++++.++..|.+++++...|+.+.++|+++++.++.+.+ +.++++.+...+.+++++|.+.+++.+.++++
T Consensus 308 ~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~~~~~~ 386 (397)
T COG0475 308 LAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTPILLKR 386 (397)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999998877 68888888888888888777777777766655
Q ss_pred hhh
Q 004461 386 ARR 388 (752)
Q Consensus 386 ~~~ 388 (752)
..+
T Consensus 387 ~~~ 389 (397)
T COG0475 387 LLK 389 (397)
T ss_pred hhc
Confidence 433
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=5e-33 Score=320.82 Aligned_cols=339 Identities=18% Similarity=0.182 Sum_probs=271.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHh
Q 004461 30 LPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVG 109 (752)
Q Consensus 30 ~~~~l~~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~G 109 (752)
+..++++++++++++.+++.+++|+|+|.+++++++|+++||+++|.+. .++.+..+.++++|++++||..|
T Consensus 4 ~~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~--------~~~~~~~~~i~~l~L~~iLF~~G 75 (562)
T PRK05326 4 INSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQ--------FDNYPLAYLVGNLALAVILFDGG 75 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcc--------cCcHHHHHHHHHHHHHHHHHcCc
Confidence 4467889999999999999999999999999999999999999998653 12456789999999999999999
Q ss_pred hccChhhHHhcCchhhHHHHHHHHHHHHHHHH-HHHHhhhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHHccc-cCC
Q 004461 110 LELDPKSLRQTGKKALGIAIAGISLPFALGIG-SSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKL-LTA 187 (752)
Q Consensus 110 le~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~l-l~s 187 (752)
+|+|++.+|+++++++.+++.++++|++++.. +.++++. +| ..++++|+++++||++++.++++|.|+ +++
T Consensus 76 l~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~----~~---~~alllgai~s~Td~a~v~~iL~~~~l~l~~ 148 (562)
T PRK05326 76 LRTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLLGL----DW---LEGLLLGAIVGSTDAAAVFSLLRGKGLNLKE 148 (562)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CH---HHHHHHhhhhccCchHHHHHHHhccCCCcch
Confidence 99999999999999999999999999877544 3344432 23 678999999999999999999999995 799
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC-------
Q 004461 188 DVGRMAMSAAAVNDVAAWILLALAVALSGSGQS--SLVPVWVFLSGCVFVICLTLFVPPTFKWMARQC---HE------- 255 (752)
Q Consensus 188 ~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~---~e------- 255 (752)
++++++.+++++||.++++++.++..+...+.. .+..++.++..++++++.++++++++.|+.++. ++
T Consensus 149 ~v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~~~~~~~~i~~ 228 (562)
T PRK05326 149 RVASTLEIESGSNDPMAVFLTITLIELITGGETGLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIALPAEGLYPILV 228 (562)
T ss_pred hHHhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHH
Confidence 999999999999999999988877765543332 122334455556666777778888888877765 22
Q ss_pred --------------------------------CchHHHHHHHHHHHHHHhhHHHHHHHhhccccchhhchhhhHHHHHHH
Q 004461 256 --------------------------------GPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALV 303 (752)
Q Consensus 256 --------------------------------g~~~~~l~~kl~~~~~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~ 303 (752)
++..+...+++++...+++.|+||+++|+.+|+..+.+ ..+..+++.
T Consensus 229 l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~-~~~~~l~i~ 307 (562)
T PRK05326 229 LAGALLIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLD-IALPALLLA 307 (562)
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHH
Confidence 01122334455555578999999999999999988764 233333444
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCC-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004461 304 ILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLN-DQVFAIMILMAVVTTFMTTPLVMAV 382 (752)
Q Consensus 304 ~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~l~~~~~~~~~i~-~~~~~~lv~~~lv~t~i~~pl~~~l 382 (752)
+++.+++|+++++++++.++++++|+..+|| .++||+++++++..+...++.+ +..|.++.+++++++.+.++.++.+
T Consensus 308 ~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~-~g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~ 386 (562)
T PRK05326 308 LFLILVARPLAVFLSLLPFRFNLREKLFISW-VGLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWA 386 (562)
T ss_pred HHHHHHHHHHHHHHHHccCCCCHhhhheeee-ecchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHH
Confidence 5667889999999999999999999999999 5899999999999999999886 4567777777777777767777665
Q ss_pred hch
Q 004461 383 YKP 385 (752)
Q Consensus 383 ~~~ 385 (752)
.++
T Consensus 387 a~~ 389 (562)
T PRK05326 387 ARK 389 (562)
T ss_pred HHH
Confidence 543
No 8
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=99.97 E-value=2.1e-33 Score=310.53 Aligned_cols=332 Identities=33% Similarity=0.543 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccChhhHH
Q 004461 39 LVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLR 118 (752)
Q Consensus 39 lil~~~~~~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~ 118 (752)
++++++.+.+.++||+++|.+++|+++|+++||.+++..++ . ....+.++++|+.++||.+|+|+|++.+|
T Consensus 3 lli~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~-------~--~~~~~~l~~i~l~~llF~~G~~~d~~~l~ 73 (380)
T PF00999_consen 3 LLILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEP-------D--NPSFELLAEIGLAFLLFEAGLELDIKELR 73 (380)
T ss_dssp ------------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG---
T ss_pred EEeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccc-------h--hhHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 34455666677899999999999999999999998885431 1 46788999999999999999999999999
Q ss_pred hcCchhhHHHHHHHHHHHHH-HHHHHHHhhhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCchHHHHHHHH
Q 004461 119 QTGKKALGIAIAGISLPFAL-GIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAA 197 (752)
Q Consensus 119 ~~~~~~~~i~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a 197 (752)
+++|+++.+++.++++|+++ ++.+++++. .. +++. ..++++|.+++.||++++.++++|.+..+++.++++++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~-~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~ 149 (380)
T PF00999_consen 74 RNWRRALALGLVGFLLPFILVGFLLSFFLF-IL--GLSW-AEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSES 149 (380)
T ss_dssp --------------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTT
T ss_pred cccccccccccceeeehhhHHHHHHHHhhc-cc--hhhh-HHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhc
Confidence 99999999999999999988 666654321 11 2222 6789999999999999999999999989999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCC-CCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC-----------------
Q 004461 198 AVNDVAAWILLALAVALSGSG-QSS-LVPVWVFLSGCVFVICLTLFVPPTFKWMARQC---HE----------------- 255 (752)
Q Consensus 198 ~i~D~~~~~ll~v~~~~~~~~-~~~-~~~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~---~e----------------- 255 (752)
++||+++++++.+.......+ ... ......++..++.+++.+++.+++.+|+.++. ++
T Consensus 150 ~i~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a 229 (380)
T PF00999_consen 150 VINDIIAIILLSILISLAQASGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLALILLLYGLA 229 (380)
T ss_dssp TTTTTTTTTTT---------------------------------------------------------------------
T ss_pred hhhccchhhhhhhhhhhhcccccccccchhcchhhhhhhheeeecccchHHHHhhhhccccchhhHHHHHHHHhhhcccc
Confidence 999999999998877665111 111 11222333444445555666666666666652 22
Q ss_pred --------------------CchHHHHHHHHHHHHHHhhHHHHHHHhhccccchhhc-hhhhHHHHHHHHHHHHHHHHHH
Q 004461 256 --------------------GPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQ-GLQSWGLLALVILTACLGKIVG 314 (752)
Q Consensus 256 --------------------g~~~~~l~~kl~~~~~~~~~piFFv~~Gl~~d~~~l~-~~~~~~~~~~~~~~~~~~K~~~ 314 (752)
.+.++++.++++++.++++.|+||+++|+++|++.+. +...+...+.+++..+++|+++
T Consensus 230 ~~~g~s~~l~af~~Gl~~~~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~ 309 (380)
T PF00999_consen 230 EILGLSGILGAFIAGLILSNSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFIG 309 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccceeeeeehccccccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhce
Confidence 2345678899999988999999999999999998874 2245666677777788999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004461 315 TFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVY 383 (752)
Q Consensus 315 ~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~l~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~pl~~~l~ 383 (752)
+++.+++.|.+++++..+|+.+++||+++++++..+.+.|.++++.+++++.++++++.+.++.++.+.
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~ 378 (380)
T PF00999_consen 310 VYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPLL 378 (380)
T ss_dssp -------------HHHHTTTTSS--HHHHHHHHHHHHH-------------------------------
T ss_pred eehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998888887777777766554
No 9
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=99.97 E-value=1.3e-28 Score=259.52 Aligned_cols=228 Identities=28% Similarity=0.455 Sum_probs=186.8
Q ss_pred HHHHHHHHHHcccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccChhhHHhcC
Q 004461 42 LLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTG 121 (752)
Q Consensus 42 ~~~~~~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~ 121 (752)
+++.+++.++||+|+|++++++++|+++||+++|.++ ..+.++.++++|+++++|.+|+|+|++.+||++
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~----------~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~ 71 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLIS----------NVEGVNHLAEFGVILLMFLIGLELDLERLWKLR 71 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCC----------ChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4577789999999999999999999999999998754 335799999999999999999999999999999
Q ss_pred chhhHHHHHHHHHH-HHHHHHHHHHhhhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCchHHHHHHHHHHH
Q 004461 122 KKALGIAIAGISLP-FALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVN 200 (752)
Q Consensus 122 ~~~~~i~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~ 200 (752)
|+++.+++.++++| +++++.+.++++. ++ ..++++|++++.||++++.++++|+|+++++.|+++++++++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~ 144 (273)
T TIGR00932 72 KAAFGVGVLQVLVPGVLLGLLLGHLLGL----AL---GAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQ 144 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC----CH---HHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHH
Confidence 99999999999999 6677666665542 22 6789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----C-------------------
Q 004461 201 DVAAWILLALAVALSGSGQSS-LVPVWVFLSGCVFVICLTLFVPPTFKWMARQCH-----E------------------- 255 (752)
Q Consensus 201 D~~~~~ll~v~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~-----e------------------- 255 (752)
|+++++++.+......+.... ....+.+...++..++.+++.++..+|+.|+.+ |
T Consensus 145 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~la~~ 224 (273)
T TIGR00932 145 DIAVVPLLALLPLLATSASTEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRPSELFTAGSLLLMFGSAYFADL 224 (273)
T ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999998887665432222 122333444444445555666777777665442 2
Q ss_pred ------------------CchHHHHHHHHHHHHHHhhHHHHHHHhhcccc
Q 004461 256 ------------------GPFANALVEKVEDLVSGIFLPLYFVSSGLKTN 287 (752)
Q Consensus 256 ------------------g~~~~~l~~kl~~~~~~~~~piFFv~~Gl~~d 287 (752)
.+.++.+.++++++. ++|.|+||+++|+++|
T Consensus 225 ~g~s~~lgaf~aGl~~~~~~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 225 LGLSMALGAFLAGVVLSESEYRHKLESDLEPIG-GVLLPLFFISVGMSVD 273 (273)
T ss_pred hCCcHHHHHHHHHHHHcCCchHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence 234677899999998 9999999999999987
No 10
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=8e-28 Score=238.71 Aligned_cols=340 Identities=27% Similarity=0.372 Sum_probs=265.6
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHH
Q 004461 27 DFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMF 106 (752)
Q Consensus 27 ~~~~~~~l~~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF 106 (752)
.|+.|++-. +..-+.++++++.+..|+|+|+.+||+++|++.||.--|... +......++++|++++||
T Consensus 2 ~h~tpli~t-iv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFva----------d~~La~~LAelGViLLmF 70 (408)
T COG4651 2 HHDTPLITT-IVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVA----------DQTLAPELAELGVILLMF 70 (408)
T ss_pred CCCchHHHH-HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCccc----------chhHHHHHHHhhHHHHHH
Confidence 455555433 444567788999999999999999999999999998777653 344556899999999999
Q ss_pred HHhhccChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHHccccC
Q 004461 107 LVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLT 186 (752)
Q Consensus 107 ~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~ 186 (752)
.+|++++++.+...+.-++.-++.++.+....+.++.+.++..+ ...+.+|.++|..|+.+..|.|+|.++++
T Consensus 71 gvGLhfslkdLLavk~iAipgAl~qia~at~lg~gL~~~lgws~-------~~glvfGlaLS~aSTVvllraLqEr~lid 143 (408)
T COG4651 71 GVGLHFSLKDLLAVKAIAIPGALAQIALATLLGMGLSSLLGWSF-------GTGIVFGLALSVASTVVLLRALEERQLID 143 (408)
T ss_pred hcchheeHHHHhhHHHHhcchHHHHHHHHHHHHhHHHHHcCCCc-------ccceeeeehhhhHHHHHHHHHHHHhcccc
Confidence 99999999999877666666677777777777777777665433 44678999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CC-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----
Q 004461 187 ADVGRMAMSAAAVNDVAAWILLALAVALSGSGQ---SS-L----VPVWVFLSGCVFVICLTLFVPPTFKWMARQC----- 253 (752)
Q Consensus 187 s~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~~---~~-~----~~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~----- 253 (752)
++.||++++-.+++|+..++.+.+...+++--+ .. . ...+.+.+...|.++..++.|.+..|+..+.
T Consensus 144 t~rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~tGs 223 (408)
T COG4651 144 TQRGRIAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAATGS 223 (408)
T ss_pred ccCceEEEeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 999999999999999999998887776653211 11 1 1223455778889999999999999987764
Q ss_pred CC---------------------------Cch-----------HHHHHHHHHHHHHHhhHHHHHHHhhccccchhhchhh
Q 004461 254 HE---------------------------GPF-----------ANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQ 295 (752)
Q Consensus 254 ~e---------------------------g~~-----------~~~l~~kl~~~~~~~~~piFFv~~Gl~~d~~~l~~~~ 295 (752)
+| |++ .++..+..-++ .+-|.-+||+.+||..|+..+.+ +
T Consensus 224 rElf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~eselshraa~~slpL-rdaFaVlFFvsVGmlf~P~~l~~-~ 301 (408)
T COG4651 224 RELFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLAESELSHRAAEDSLPL-RDAFAVLFFVSVGMLFDPMILIQ-Q 301 (408)
T ss_pred HHHHHHHHHHHHHHHhhccceeeccchhHHHHHHHHHhcchhhhHHHHHhccCH-HHHHHHHHHHHhhhhcCcHHhhc-c
Confidence 23 121 12222222233 67888999999999999988775 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHH
Q 004461 296 SWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMT 375 (752)
Q Consensus 296 ~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~l~~~~~~~~~i~~~~~~~lv~~~lv~t~i~ 375 (752)
.+. +...+.+.+.+|-+..+...+.++.|.|.++.++..+.+.|+++++++..+.+.+++++.. --++++.-+.+++.
T Consensus 302 pl~-vlatllii~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~g-r~LvlagailsIl~ 379 (408)
T COG4651 302 PLA-VLATLLIILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAG-RDLVLAGAILSILL 379 (408)
T ss_pred hHH-HHHHHHHHHhhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHH-HHHHHHHHHHHHHH
Confidence 343 4455666778999999999999999999999999999999999999999999999998544 44556666778999
Q ss_pred HHHHHHHhchhhh
Q 004461 376 TPLVMAVYKPARR 388 (752)
Q Consensus 376 ~pl~~~l~~~~~~ 388 (752)
.|+.....++-++
T Consensus 380 nPllf~~~dr~~~ 392 (408)
T COG4651 380 NPLLFALLDRYQR 392 (408)
T ss_pred hHHHHHHHHHHhh
Confidence 9998776655433
No 11
>PRK11175 universal stress protein UspE; Provisional
Probab=99.91 E-value=1.3e-23 Score=225.39 Aligned_cols=282 Identities=13% Similarity=0.076 Sum_probs=180.6
Q ss_pred ceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHHHHH
Q 004461 408 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 487 (752)
Q Consensus 408 ~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 487 (752)
.|||+|+|+|+.+..+++.+..++ ++.+++++++|+++......+............+.. .+..++.++.+.+
T Consensus 4 ~~ILv~~D~s~~~~~al~~a~~lA---~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~ 76 (305)
T PRK11175 4 QNILVVIDPNQDDQPALRRAVYLA---QRNGGKITAFLPIYDFSYEMTTLLSPDEREAMRQGV----ISQRTAWIREQAK 76 (305)
T ss_pred ceEEEEcCCCccccHHHHHHHHHH---HhcCCCEEEEEeccCchhhhhcccchhHHHHHHHHH----HHHHHHHHHHHHH
Confidence 479999999999999999999999 457788999999864321111000000000000000 0011122222222
Q ss_pred hhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEecCC
Q 004461 488 FQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRG 567 (752)
Q Consensus 488 ~~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv~rg 567 (752)
.....+++++..+... ++++++|++.|+++++||||||+||+.++.+.+ +||+.+++++++||||.++.++.
T Consensus 77 ~~~~~~~~~~~~v~~~--g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~------~gs~~~~l~~~~~~pvlvv~~~~ 148 (305)
T PRK11175 77 PYLDAGIPIEIKVVWH--NRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVI------FTPTDWHLLRKCPCPVLMVKDQD 148 (305)
T ss_pred HHhhcCCceEEEEecC--CCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhc------cChhHHHHHhcCCCCEEEecccc
Confidence 2223567777766532 589999999999999999999999998887777 99999999999999997765431
Q ss_pred CCCCcccccCCcceEEEEEccCCcch-------HHHHHHHHHHhhCC-CeEEEEEEEeecccccCCcc--c-cCCcCccc
Q 004461 568 LGGTTQVSASNVSYTITVLFFGGRDD-------REALACGARMAEHP-GISFIVIRFLLAADAIGNTV--S-VDMAGNAS 636 (752)
Q Consensus 568 ~~~~~~~~~~~~~~~I~v~~~gg~dd-------reAL~~a~~ma~~~-~~~ltvl~v~~~~~~~~~~~--~-~~~~~~~~ 636 (752)
....++|++++++++++ +.|+++|.++|+.. +++++++++.+......... . ..++..++
T Consensus 149 ---------~~~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~ 219 (305)
T PRK11175 149 ---------WPEGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYNDA 219 (305)
T ss_pred ---------cCCCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHHHH
Confidence 11357999999998753 67999999999998 99999999985432110000 0 00111111
Q ss_pred c---HHHHHHHHHhhcCCCCCeEEEEEEecChHHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccccchhhhcc
Q 004461 637 M---DEEVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTS 713 (752)
Q Consensus 637 ~---d~~~l~e~~~~~~~~~~v~~~e~~v~~g~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las 713 (752)
. .++.++++..+.... ........++..+.+....+..++|||+||+|+ .+|+.+| .+|+.++.++.
T Consensus 220 ~~~~~~~~l~~~~~~~~~~--~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~----~~~~~~~----llGS~a~~v~~ 289 (305)
T PRK11175 220 IRGQHLLAMKALRQKFGID--EEQTHVEEGLPEEVIPDLAEHLDAELVILGTVG----RTGLSAA----FLGNTAEHVID 289 (305)
T ss_pred HHHHHHHHHHHHHHHhCCC--hhheeeccCCHHHHHHHHHHHhCCCEEEECCCc----cCCCcce----eecchHHHHHh
Confidence 1 123344444332111 111122234444444322222349999999999 7788877 79999999998
Q ss_pred CCCCceeEEEEE
Q 004461 714 LEFSTASVLIIQ 725 (752)
Q Consensus 714 ~~~~~~svLvvq 725 (752)
.-- +|||||.
T Consensus 290 ~~~--~pVLvv~ 299 (305)
T PRK11175 290 HLN--CDLLAIK 299 (305)
T ss_pred cCC--CCEEEEc
Confidence 432 7999995
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.90 E-value=1.5e-21 Score=222.63 Aligned_cols=327 Identities=17% Similarity=0.158 Sum_probs=220.1
Q ss_pred HHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccChhhH
Q 004461 38 CLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSL 117 (752)
Q Consensus 38 ~lil~~~~~~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l 117 (752)
.++++++.....+++|+++|.+++++++|+++||..++.. ++. +. +.+-.+++.+++|..|+++|++.+
T Consensus 4 ~~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~-------~~~-~~---~~~~~~~Lp~lLF~~g~~~~~~~l 72 (525)
T TIGR00831 4 IELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPE-------VPL-DR---EIVLFLFLPPLLFEAAMNTDLREL 72 (525)
T ss_pred HHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCC-------CCC-CH---HHHHHHHHHHHHHHHHhcCCHHHH
Confidence 3445555666789999999999999999999998644321 011 11 233458999999999999999999
Q ss_pred HhcCchhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCchHHHHHHHH
Q 004461 118 RQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAA 197 (752)
Q Consensus 118 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a 197 (752)
|++++.++.+++.++++|++++..+.+++. +.++ ..++++|+++++|+++++.+++++.+ .++++.+++.+++
T Consensus 73 ~~~~~~i~~la~~~vlit~~~v~~~~~~~~-----~l~~-~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gES 145 (525)
T TIGR00831 73 RENFRPIALIAFLLVVVTTVVVGFSLNWIL-----GIPL-ALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGES 145 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cccH-HHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhh
Confidence 999999999999999999887665555432 1222 67999999999999999999999988 5789999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-------------------
Q 004461 198 AVNDVAAWILLALAVALSGS-GQ-SSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQC-HE------------------- 255 (752)
Q Consensus 198 ~i~D~~~~~ll~v~~~~~~~-~~-~~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~-~e------------------- 255 (752)
++||..+++++.++..+..+ +. +.....+.++..++.++++++++..+..|+.++. .+
T Consensus 146 llND~~alvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~~~~~~~l~l~~~~~~y~lA 225 (525)
T TIGR00831 146 LLNDGAALVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDDPLVEIALTILAPFAGFLLA 225 (525)
T ss_pred hhcchHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999887776543 21 2122233334444444555555555555555432 22
Q ss_pred ---------------------Cch------HHHHHHHHHHHHHHhhHHHHHHHhhccccchhhc--h-hh-h-----HHH
Q 004461 256 ---------------------GPF------ANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQ--G-LQ-S-----WGL 299 (752)
Q Consensus 256 ---------------------g~~------~~~l~~kl~~~~~~~~~piFFv~~Gl~~d~~~l~--~-~~-~-----~~~ 299 (752)
++. .+...+.++.....++.+++|+++|+++...... . .. . +..
T Consensus 226 e~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~ 305 (525)
T TIGR00831 226 ERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILAL 305 (525)
T ss_pred HHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Confidence 010 1222345666667899999999999998742111 0 00 0 100
Q ss_pred ---HHHHHHHHHHHHHHHHHHHH--Hh-----cCCChHHHHHHHHHhhhhHHHHHHHHHhhhc----------cCCCCHH
Q 004461 300 ---LALVILTACLGKIVGTFVVS--LS-----FKVPLREALALGILMNTKGLVELIVLNIGKD----------RKVLNDQ 359 (752)
Q Consensus 300 ---~~~~~~~~~~~K~~~~~l~~--~~-----~~~~~~~~~~lgl~l~~rG~v~l~l~~~~~~----------~~~i~~~ 359 (752)
.+++.......|++.++... ++ .++++|+.+.++| .+.||.++++++..... +..+-.-
T Consensus 306 ~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~~p~~~~~g~~~p~r~~i~~~ 384 (525)
T TIGR00831 306 FTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALSFPNQLLSGMAFPARYELVFL 384 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHHccccccCCCCCchHHHHHHH
Confidence 11222233445655443321 11 2478999999999 79999999998864321 1223334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 004461 360 VFAIMILMAVVTTFMTTPLVMAVY 383 (752)
Q Consensus 360 ~~~~lv~~~lv~t~i~~pl~~~l~ 383 (752)
++.+++++.++.+...+|+++++-
T Consensus 385 ~~~vVl~TllvqG~tlp~l~r~l~ 408 (525)
T TIGR00831 385 AAGVILFSLLVQGISLPIFVKRKF 408 (525)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhcC
Confidence 455666677776766777777663
No 13
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.90 E-value=2.3e-21 Score=221.38 Aligned_cols=323 Identities=14% Similarity=0.200 Sum_probs=229.3
Q ss_pred ccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHc-ccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHH
Q 004461 20 FQGDSPLDFALPLAILQICLVILLTRGLAFILR-PLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLAN 98 (752)
Q Consensus 20 ~~~~~pl~~~~~~~l~~i~lil~~~~~~~~ll~-rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~ 98 (752)
|+.-++-+.. +.++.++..+++..++..+++ |+.+|.++.++++|+++||.++|.+.+.- +.......++ +++
T Consensus 3 w~~l~~~~~~--l~~~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~---~g~~d~i~le-Ite 76 (810)
T TIGR00844 3 WEQLEVTKAH--VAYSCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLS---WGNTDSITLE-ISR 76 (810)
T ss_pred cccccccchh--hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhh---cccchHHHHH-HHH
Confidence 5444444332 344555666666666666666 99999999999999999999988655310 0001223344 999
Q ss_pred HHHHHHHHHHhhccChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHhhccHHHHHHH
Q 004461 99 LGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARI 178 (752)
Q Consensus 99 lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~i 178 (752)
+++.+.+|.+|++++.+.+|+.++.++.+++.++.++++++.++++++...+ +| ..++++|+++++|++.....+
T Consensus 77 IvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL--~~---~~ALLLGAILAPTDPVLAssV 151 (810)
T TIGR00844 77 ILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGL--NF---PASLLMGACITATDPVLAQSV 151 (810)
T ss_pred HHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CH---HHHHHHHhhhcCCcHHHHHHH
Confidence 9999999999999999999999999999999999999888887777663322 33 679999999999998767777
Q ss_pred HH---HccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCh-------hHHHHHHHHHHHHHHHHHHHHHHH
Q 004461 179 LA---ELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSG--QSSL-------VPVWVFLSGCVFVICLTLFVPPTF 246 (752)
Q Consensus 179 L~---el~ll~s~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~--~~~~-------~~~~~~~~~v~~~~~~~~v~~~~~ 246 (752)
++ ..+ ++.++..++.+++.+||.++++++.+...+.... ...+ ..+|.++..++++++++++.++++
T Consensus 152 ~kg~~~~r-vP~rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll 230 (810)
T TIGR00844 152 VSGTFAQK-VPGHLRNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAI 230 (810)
T ss_pred Hhcccccc-CChHHHhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 234 5788999999999999999998876655443211 1111 122333444555556666666666
Q ss_pred HHHHHhcC---C-----------------------C---------------chHH-HHHHHHHHHHHHhhHHHHHHHhhc
Q 004461 247 KWMARQCH---E-----------------------G---------------PFAN-ALVEKVEDLVSGIFLPLYFVSSGL 284 (752)
Q Consensus 247 ~~~~~~~~---e-----------------------g---------------~~~~-~l~~kl~~~~~~~~~piFFv~~Gl 284 (752)
.|+.++.. + | .+.. .-...++.....++..++|+++|+
T Consensus 231 ~~l~rr~~i~~esfla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa 310 (810)
T TIGR00844 231 RFAEGKNIIDRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGS 310 (810)
T ss_pred HHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 66665531 2 0 0011 112235566678899999999999
Q ss_pred cccchhhch----hhhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHhhhhHHHHHHHHHhhhccCC
Q 004461 285 KTNIATIQG----LQSWGLLALVILTACLGKIVGTFVVSLSF--KVPLREALALGILMNTKGLVELIVLNIGKDRKV 355 (752)
Q Consensus 285 ~~d~~~l~~----~~~~~~~~~~~~~~~~~K~~~~~l~~~~~--~~~~~~~~~lgl~l~~rG~v~l~l~~~~~~~~~ 355 (752)
.+....+.. ...|..+++.+++.++.|+.++++...+. ..+++|++++|| .++||..++.++..+.+.+.
T Consensus 311 ~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 311 ILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred hhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 998776642 12466666777777888988888765443 468999999999 89999999999988876654
No 14
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.88 E-value=6.2e-20 Score=203.52 Aligned_cols=337 Identities=18% Similarity=0.206 Sum_probs=255.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 004461 32 LAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLE 111 (752)
Q Consensus 32 ~~l~~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle 111 (752)
..++++.+++++......+.+|+..|.+..+++.|++.||.+++...+ +....-+.+-.+.+..++|..|++
T Consensus 6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~--------~~~~~~el~~~l~l~ilLf~~g~~ 77 (429)
T COG0025 6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISP--------DLELDPELFLVLFLAILLFAGGLE 77 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccc--------cccCChHHHHHHHHHHHHHHhHhc
Confidence 467788888899999999999999999999999999999988876552 111112333399999999999999
Q ss_pred cChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCchHH
Q 004461 112 LDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGR 191 (752)
Q Consensus 112 ~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~g~ 191 (752)
+|.+.+|++++.++.+++.+++++.+......+++.+ ++++ ..++.+|+++|+|++.++.++.++.| .+.++.+
T Consensus 78 l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~----~i~~-~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~ 151 (429)
T COG0025 78 LDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLP----GIPL-AAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRT 151 (429)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ChhH-HHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHH
Confidence 9999999999999999999999997766666666633 3333 68999999999999999999999977 7899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--hhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhc---C--C-----
Q 004461 192 MAMSAAAVNDVAAWILLALAVALSGSGQSS--LVPV----WVFLSGCVFVICLTLFVPPTFKWMARQC---H--E----- 255 (752)
Q Consensus 192 l~l~~a~i~D~~~~~ll~v~~~~~~~~~~~--~~~~----~~~~~~v~~~~~~~~v~~~~~~~~~~~~---~--e----- 255 (752)
+..++|++||..+++++.+...+..+.... .... +..+..++++++.+++.+++.+++.++. + |
T Consensus 152 iL~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L 231 (429)
T COG0025 152 ILEGESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTL 231 (429)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHH
Confidence 999999999999999999888766543221 2222 2233444455666666677777776642 1 1
Q ss_pred ------------------------C------ch-------HHHHHHHHHHHHHHhhHHHHHHHhhccccchhhchhhhHH
Q 004461 256 ------------------------G------PF-------ANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWG 298 (752)
Q Consensus 256 ------------------------g------~~-------~~~l~~kl~~~~~~~~~piFFv~~Gl~~d~~~l~~~~~~~ 298 (752)
| .+ .+...+.++.....++.-+.|++.|++++...... ..+.
T Consensus 232 ~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~-~~~~ 310 (429)
T COG0025 232 LLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLA-LGLL 310 (429)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-hhHH
Confidence 1 00 12233446666678999999999999999987764 3466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC------CChHHHHHHHHHhhhhHHHHHHHHHhhhc------cCCCCHHHHHHHHH
Q 004461 299 LLALVILTACLGKIVGTFVVSLSFK------VPLREALALGILMNTKGLVELIVLNIGKD------RKVLNDQVFAIMIL 366 (752)
Q Consensus 299 ~~~~~~~~~~~~K~~~~~l~~~~~~------~~~~~~~~lgl~l~~rG~v~l~l~~~~~~------~~~i~~~~~~~lv~ 366 (752)
.+++.++..+++|+++++...+..+ .++++++.++| -++||.++++++..... ...+..-.+.+++.
T Consensus 311 ~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~al~~p~~~~~~~~~~i~~i~~~vIl~ 389 (429)
T COG0025 311 GLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLALALLIPLELPGPARELILFIVFLVILF 389 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHHHHHchhhccchhhhHHHHHHHHHHHH
Confidence 6778888899999999999998853 79999999999 79999999999876552 22333345556656
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 004461 367 MAVVTTFMTTPLVMAVYK 384 (752)
Q Consensus 367 ~~lv~t~i~~pl~~~l~~ 384 (752)
+.++.+...+|+.+++..
T Consensus 390 Sl~v~g~t~~~l~~~~~~ 407 (429)
T COG0025 390 SLLVQGLTLPPLAKKLEV 407 (429)
T ss_pred HHHHHhhhHHHHHHHhcc
Confidence 666666666677766543
No 15
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.81 E-value=1.6e-17 Score=189.36 Aligned_cols=342 Identities=12% Similarity=0.146 Sum_probs=220.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-ccc-CCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHH
Q 004461 31 PLAILQICLVILLTRGLAFIL-RPL-RQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLV 108 (752)
Q Consensus 31 ~~~l~~i~lil~~~~~~~~ll-~rl-~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~ 108 (752)
|..+.-+.++..++.+...+. |+. ++|..+..++.|+++|+...+... .+. ..-.-+.+-.+.+-.++|..
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~------~~~-~~l~~~lf~~~~LPpIlFe~ 80 (559)
T TIGR00840 8 PYEFILWILLASLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPH------IDP-PTLDSSYFFLYLLPPIVLDA 80 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCC------Ccc-CCcCHHHHHHHHHHHHHHHH
Confidence 333333333444444444444 344 599999999999999975432210 000 00112444556777899999
Q ss_pred hhccChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhhhhc---cCCchhHHHHHHHHHHhhccHHHHHHHHHHcccc
Q 004461 109 GLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETIS---KGVDSTSFLVFMGVALSITAFPVLARILAELKLL 185 (752)
Q Consensus 109 Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll 185 (752)
|+++|.+.++++.+.++.+++.+++++.++.....+.+..... .++++ ..++.+|+++|+|++.++..++++.+ .
T Consensus 81 g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~-~~allfGAiiSaTDPVAVlai~~~~~-v 158 (559)
T TIGR00840 81 GYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGL-LDNLLFGSLISAVDPVAVLAVFEEYH-V 158 (559)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCH-HHHHHHhHHhcCCchHHHHHHHHhcC-C
Confidence 9999999999999999999999999997665555554322111 12233 78999999999999999999999999 6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----
Q 004461 186 TADVGRMAMSAAAVNDVAAWILLALAVALSGSG--QSSLV----PVWVFLSGCVFVICLTLFVPPTFKWMARQCH----- 254 (752)
Q Consensus 186 ~s~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~--~~~~~----~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~----- 254 (752)
+.++-.++.++|++||..+++++.++..+...+ ..... ....++...+.+++++++++.+..++.++..
T Consensus 159 ~~~L~~ll~gESllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~~~~ 238 (559)
T TIGR00840 159 NEKLYIIIFGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHIRQI 238 (559)
T ss_pred CcchhhheehhhhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 899999999999999999999998777665421 11111 1111111111234444444555444444331
Q ss_pred C---------------------C------------c-----h---HHHHHHHHHHHHHHhhHHHHHHHhhccccchhhch
Q 004461 255 E---------------------G------------P-----F---ANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQG 293 (752)
Q Consensus 255 e---------------------g------------~-----~---~~~l~~kl~~~~~~~~~piFFv~~Gl~~d~~~l~~ 293 (752)
+ | . . .+.-.+.++.....++..+.|+++|+.+-... ..
T Consensus 239 e~~l~l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~-~~ 317 (559)
T TIGR00840 239 EPLFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTEN-HE 317 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-hh
Confidence 1 1 0 0 11122335555567888999999999763221 11
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh------cCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCCH-----HHHH
Q 004461 294 LQSWGLLALVILTACLGKIVGTFVVSLS------FKVPLREALALGILMNTKGLVELIVLNIGKDRKVLND-----QVFA 362 (752)
Q Consensus 294 ~~~~~~~~~~~~~~~~~K~~~~~l~~~~------~~~~~~~~~~lgl~l~~rG~v~l~l~~~~~~~~~i~~-----~~~~ 362 (752)
..|...++.++++++.|+++++..++. .+.+++|.+.++| .+.||.++++++....+.+.-.. .++.
T Consensus 318 -~~~~~i~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~ 395 (559)
T TIGR00840 318 -WNWAFVVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLLDEKIFPYKFLFVTTTLV 395 (559)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhCCCCCcchHHHHHHHHHe
Confidence 234444555666778899988876653 3579999999999 79999999999876544332222 3334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 004461 363 IMILMAVVTTFMTTPLVMAVYK 384 (752)
Q Consensus 363 ~lv~~~lv~t~i~~pl~~~l~~ 384 (752)
++++++++.....+|+++++.-
T Consensus 396 VVl~TvlvqG~T~~pl~~~L~l 417 (559)
T TIGR00840 396 VVFFTVIFQGGTIKPLVEVLKV 417 (559)
T ss_pred eehHHHHHHHhhHHHHHHHhCC
Confidence 4445556656666888887743
No 16
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.81 E-value=2.1e-18 Score=180.11 Aligned_cols=314 Identities=18% Similarity=0.197 Sum_probs=251.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHH
Q 004461 29 ALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLV 108 (752)
Q Consensus 29 ~~~~~l~~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~ 108 (752)
+...+++.-.+++.++.+.+.+..|+|.|..+-.+..|++.|--++|.++ .++...-..++++++++++|..
T Consensus 4 t~~~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~--------fdNy~~Ay~vg~lALaiILfdg 75 (574)
T COG3263 4 TINLILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIE--------FDNYPFAYMVGNLALAIILFDG 75 (574)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCcccccc--------cCccHHHHHHHHHHHHHHhhcC
Confidence 44445555557778888889999999999999999999999999998765 2456677889999999999999
Q ss_pred hhccChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCc
Q 004461 109 GLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTAD 188 (752)
Q Consensus 109 Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~ 188 (752)
|+.++++.+|...++++.++..+++++-.+...+++++... +| .+++++|++..+|+.+.+..+|.+.+ +|.+
T Consensus 76 G~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l---~w---le~~LiGAiVgSTDAAAVF~lL~~~n-l~er 148 (574)
T COG3263 76 GFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLNL---DW---LEGLLIGAIVGSTDAAAVFSLLGGKN-LNER 148 (574)
T ss_pred ccCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcc---HH---HHHHHHHHhhccccHHHHHHHHccCC-hhhh
Confidence 99999999999999999999999999966555444444321 33 78999999999999999999999888 6889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--C---------
Q 004461 189 VGRMAMSAAAVNDVAAWILLALAVALSGSGQSS--LVPVWVFLSGCVFVICLTLFVPPTFKWMARQCH--E--------- 255 (752)
Q Consensus 189 ~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~--e--------- 255 (752)
++.+..-++--||-.++++...++.+...+.+. +..+..++...+++++.++...++..|+++|.. +
T Consensus 149 v~stLEiESGtNDPmAvfLTitlieli~~get~l~~~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~nLd~GL~pil~la 228 (574)
T COG3263 149 VASTLEIESGSNDPMAVFLTITLIELIAGGETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRINLDSGLYPILALA 228 (574)
T ss_pred hhhhEEeecCCCCceeeehhHHHHHHHhccccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 999999999999999988876565554444332 233334567788888999999999999988872 2
Q ss_pred ---------------------------C--ch--HHHHHHHHHHHHHHhhHHHHHHHhhccccchhhchhhhHHHHHHHH
Q 004461 256 ---------------------------G--PF--ANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVI 304 (752)
Q Consensus 256 ---------------------------g--~~--~~~l~~kl~~~~~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~~ 304 (752)
| |+ .+.+..-.+.+ .++..-+.|...|+-++++++.. ...+.+++.+
T Consensus 229 ~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~-twlaQI~MFlvLGLLvtPsql~~-iavPailL~l 306 (574)
T COG3263 229 GGLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGL-AWLAQILMFLVLGLLVTPSQLLP-IAIPAILLSL 306 (574)
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccH-HHHHHHHHHHHHHHhcCHhhhhH-hhHHHHHHHH
Confidence 0 11 23344445555 57777788999999999998875 4566677788
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCCHHH
Q 004461 305 LTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQV 360 (752)
Q Consensus 305 ~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~l~~~~~~~~~i~~~~ 360 (752)
.+.+++|++++|+...-+|.+++|.+.++| .+-||.++++++..-+-.|+-+.+.
T Consensus 307 ~mifvaRP~aV~l~l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l 361 (574)
T COG3263 307 WMIFVARPLAVFLGLIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARL 361 (574)
T ss_pred HHHHHHhHHHHHHhhcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccceE
Confidence 888999999999999999999999999999 7999999999998777666655443
No 17
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.68 E-value=2.8e-16 Score=146.25 Aligned_cols=131 Identities=24% Similarity=0.352 Sum_probs=105.2
Q ss_pred eEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHHHHHh
Q 004461 409 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAF 488 (752)
Q Consensus 409 rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 488 (752)
|||+|+|++++++.+++++..+++ ..+.+++++|+++.+...... ... . . .+..++.++.+.+.
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~---~~~~~v~ll~v~~~~~~~~~~---~~~-~--~-------~~~~~~~~~~~~~~ 64 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALAR---AQNGEIIPLNVIEVPNHSSPS---QLE-V--N-------VQRARKLLRQAERI 64 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhh---cCCCeEEEEEEEecCCCCCcc---hhH-H--H-------HHHHHHHHHHHHHH
Confidence 699999999999999999999994 478899999999876433210 000 0 0 02345666666666
Q ss_pred hhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEE
Q 004461 489 QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 563 (752)
Q Consensus 489 ~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Il 563 (752)
..+.++++++.+..+ +++.++||+.|++.++|+||||+|+++++.+.+ +||++++|++++||||+|+
T Consensus 65 ~~~~g~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~------lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 65 AASLGVPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSLRDRL------FGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred hhhcCCceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCcccee------cCchHHHHHhcCCCCEEEe
Confidence 666778888888765 589999999999999999999999999887777 9999999999999999765
No 18
>PRK15456 universal stress protein UspG; Provisional
Probab=99.61 E-value=1.2e-15 Score=144.52 Aligned_cols=137 Identities=13% Similarity=0.133 Sum_probs=92.7
Q ss_pred ceEEEEeecCC--ChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHHH
Q 004461 408 FRILACFHSAR--NIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAF 485 (752)
Q Consensus 408 ~rILv~v~~s~--~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 485 (752)
.|||+|+|+|+ ++..+++.|..++. .. .+++++|+++...... . .... .....+.+. ..+..++.++.+
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la~---~~-~~l~llhv~~~~~~~~-~--~~~~-~~~~~~~~~-~~~~~~~~l~~~ 73 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLAQ---DD-GVIHLLHVLPGSASLS-L--HRFA-ADVRRFEEH-LQHEAEERLQTM 73 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHHh---cC-CeEEEEEEecCccccc-c--cccc-cchhhHHHH-HHHHHHHHHHHH
Confidence 47999999995 89999999999984 33 4799999997542110 0 0000 000000000 001122223223
Q ss_pred HHhhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEE
Q 004461 486 EAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 563 (752)
Q Consensus 486 ~~~~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Il 563 (752)
.+.....++++++.+..+ ++.++|+++|+++++||||||+||++ +.+.+ +||++++|++++||||.|+
T Consensus 74 ~~~~~~~~~~v~~~v~~G---~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~l------lGS~a~~v~~~a~~pVLvV 141 (142)
T PRK15456 74 VSHFTIDPSRIKQHVRFG---SVRDEVNELAEELGADVVVIGSRNPS-ISTHL------LGSNASSVIRHANLPVLVV 141 (142)
T ss_pred HHHhCCCCcceEEEEcCC---ChHHHHHHHHhhcCCCEEEEcCCCCC-cccee------cCccHHHHHHcCCCCEEEe
Confidence 222222567777777665 99999999999999999999999974 66667 9999999999999998764
No 19
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.61 E-value=1.7e-15 Score=144.06 Aligned_cols=140 Identities=10% Similarity=0.131 Sum_probs=98.1
Q ss_pred eEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHHHHHh
Q 004461 409 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAF 488 (752)
Q Consensus 409 rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 488 (752)
+||+|+|+|+++..+++.+..++. ..+.+++++|+++.+.................... .+..++.++.+.+.
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~---~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~ 73 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLA---TKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEE----DKEAKELLLPYRCF 73 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhcc---CCCCcEEEEEeccCcccCCCCccchHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 599999999999999999999994 46788999999875422110000000000000000 01233344444333
Q ss_pred hhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhH-HHHHHHhhcCC--CceEEE
Q 004461 489 QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFR-WVNQRVLKHAP--CSVGIL 563 (752)
Q Consensus 489 ~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~g-sv~~~Vl~~Ap--C~V~Il 563 (752)
.+..++.++..+..+ +++++.|+++|++.++|+||||.||++++.+.+ +| |++++|++++| |||.|+
T Consensus 74 ~~~~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~------~gssva~~Vi~~a~~~c~Vlvv 143 (146)
T cd01989 74 CSRKGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHFSMKF------KKSDVASSVLKEAPDFCTVYVV 143 (146)
T ss_pred HhhcCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCceeecc------cCCchhHHHHhcCCCCceEEEE
Confidence 334677777777654 489999999999999999999999999888777 77 69999999999 999654
No 20
>PRK15005 universal stress protein F; Provisional
Probab=99.58 E-value=4.2e-15 Score=140.87 Aligned_cols=136 Identities=19% Similarity=0.172 Sum_probs=93.4
Q ss_pred ceEEEEeecCCC--hhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHHH
Q 004461 408 FRILACFHSARN--IPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAF 485 (752)
Q Consensus 408 ~rILv~v~~s~~--~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 485 (752)
.|||+|+|+|++ +..+++.+..++ +..+.+++++|+++.............. .....+ +..++..+.+
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~la---~~~~~~l~ll~v~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~l 72 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEAEA---KIDDAEVHFLTVIPSLPYYASLGLAYSA---ELPAMD----DLKAEAKSQL 72 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHHHH---hccCCeEEEEEEEccCcccccccccccc---cchHHH----HHHHHHHHHH
Confidence 479999999998 578999999999 4477889999999753321110000000 000000 1112222333
Q ss_pred HHhhhc---cceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEE
Q 004461 486 EAFQQL---SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 562 (752)
Q Consensus 486 ~~~~~~---~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~I 562 (752)
+++.++ .+++++..+..+ ++.+.|+++|++.++||||||+|+ .++.+.+ +||++++|++++||||.|
T Consensus 73 ~~~~~~~~~~~~~~~~~v~~G---~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~~l------lGS~a~~vl~~a~cpVlv 142 (144)
T PRK15005 73 EEIIKKFKLPTDRVHVHVEEG---SPKDRILELAKKIPADMIIIASHR-PDITTYL------LGSNAAAVVRHAECSVLV 142 (144)
T ss_pred HHHHHHhCCCCCceEEEEeCC---CHHHHHHHHHHHcCCCEEEEeCCC-CCchhee------ecchHHHHHHhCCCCEEE
Confidence 333332 456677776655 899999999999999999999995 5677777 999999999999999876
Q ss_pred E
Q 004461 563 L 563 (752)
Q Consensus 563 l 563 (752)
+
T Consensus 143 V 143 (144)
T PRK15005 143 V 143 (144)
T ss_pred e
Confidence 4
No 21
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.55 E-value=1.5e-14 Score=137.21 Aligned_cols=134 Identities=7% Similarity=0.036 Sum_probs=89.7
Q ss_pred ceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHHHHH
Q 004461 408 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 487 (752)
Q Consensus 408 ~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 487 (752)
.|||+|+|+|+++..+++.+..++ +..+.+++++|+.+.......... +. ......+ ...++..+.+++
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la---~~~~a~l~ll~v~~~~~~~~~~~~--~~--~~~~~~~----~~~~~~~~~l~~ 72 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMA---RPYNAKVSLIHVDVNYSDLYTGLI--DV--NLGDMQK----RISEETHHALTE 72 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHH---HhhCCEEEEEEEccChhhhhhhhh--hc--chHHHHH----HHHHHHHHHHHH
Confidence 579999999999999999999999 446789999999532111110000 00 0000000 112333344555
Q ss_pred hhhccceEEE-EeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEe
Q 004461 488 FQQLSRVSVR-PMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILI 564 (752)
Q Consensus 488 ~~~~~~v~v~-~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv 564 (752)
+.++.++.+. ..+.. +++++.|+++|++.++||||||+||+ .. + . +||++++|+++|||||.|+.
T Consensus 73 ~~~~~~~~~~~~~~~~---G~p~~~I~~~a~~~~~DLIV~Gs~~~-~~-~-~------lgSva~~v~~~a~~pVLvv~ 138 (144)
T PRK15118 73 LSTNAGYPITETLSGS---GDLGQVLVDAIKKYDMDLVVCGHHQD-FW-S-K------LMSSARQLINTVHVDMLIVP 138 (144)
T ss_pred HHHhCCCCceEEEEEe---cCHHHHHHHHHHHhCCCEEEEeCccc-HH-H-H------HHHHHHHHHhhCCCCEEEec
Confidence 5554555543 33333 49999999999999999999999963 11 1 1 78999999999999987754
No 22
>PRK09982 universal stress protein UspD; Provisional
Probab=99.55 E-value=1.3e-14 Score=137.37 Aligned_cols=133 Identities=8% Similarity=0.060 Sum_probs=89.0
Q ss_pred ceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHHHHH
Q 004461 408 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 487 (752)
Q Consensus 408 ~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 487 (752)
.|||+|+|+|+++..+++.|..++ +..+++++++||++......+.....+. ....+ ...++..+.+++
T Consensus 4 k~ILvavD~S~~s~~al~~A~~lA---~~~~a~l~llhV~~~~~~~~~~~~~~~~----~~~~~----~~~~~~~~~l~~ 72 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALELA---RHNDAHLTLIHIDDGLSELYPGIYFPAT----EDILQ----LLKNKSDNKLYK 72 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHH---HHhCCeEEEEEEccCcchhchhhhccch----HHHHH----HHHHHHHHHHHH
Confidence 479999999999999999999999 4588999999998653211110000000 00000 111122222333
Q ss_pred hhhc-cceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEE
Q 004461 488 FQQL-SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 563 (752)
Q Consensus 488 ~~~~-~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Il 563 (752)
..++ ....++..+..+ ++++.|+++|++.++||||||+| ++++.+ + ++ ++++|+++++|||.|+
T Consensus 73 ~~~~~~~~~~~~~v~~G---~p~~~I~~~A~~~~aDLIVmG~~-~~~~~~-~------~~-va~~V~~~s~~pVLvv 137 (142)
T PRK09982 73 LTKNIQWPKTKLRIERG---EMPETLLEIMQKEQCDLLVCGHH-HSFINR-L------MP-AYRGMINKMSADLLIV 137 (142)
T ss_pred HHHhcCCCcceEEEEec---CHHHHHHHHHHHcCCCEEEEeCC-hhHHHH-H------HH-HHHHHHhcCCCCEEEe
Confidence 3322 223455666655 99999999999999999999976 655543 3 54 9999999999998765
No 23
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.47 E-value=1.8e-13 Score=126.19 Aligned_cols=122 Identities=18% Similarity=0.166 Sum_probs=95.2
Q ss_pred eEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHHHHHh
Q 004461 409 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAF 488 (752)
Q Consensus 409 rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 488 (752)
|||+|+|+++.+..+++.+..++. ..+.+++++|+++.... . . .+..++.++.+.+.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~---~~~~~l~ll~v~~~~~~--~-----------~-------~~~~~~~l~~~~~~ 57 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLAD---RLKAPWYVVYVETPRLN--R-----------L-------SEAERRRLAEALRL 57 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHH---HhCCCEEEEEEecCccc--c-----------C-------CHHHHHHHHHHHHH
Confidence 699999999999999999999994 47788999999863211 0 0 02234555555555
Q ss_pred hhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcC-CCceEEE
Q 004461 489 QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHA-PCSVGIL 563 (752)
Q Consensus 489 ~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~A-pC~V~Il 563 (752)
.++.++.. .+..+ +++.+.|+++|++.++|+||||+|+++.+.+.+ +||++++|+++| ||||.|.
T Consensus 58 ~~~~~~~~--~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~------~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 58 AEELGAEV--VTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRWRELF------RGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred HHHcCCEE--EEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHh------cccHHHHHHHhCCCCeEEEe
Confidence 55444443 33334 589999999999999999999999999888888 999999999999 9998764
No 24
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.44 E-value=2.4e-12 Score=141.52 Aligned_cols=346 Identities=16% Similarity=0.173 Sum_probs=219.9
Q ss_pred HHHHHHHHHHHHHHHHHHcccC---CChhHHHHHHHHhhCccccC----chhhhhh-ccCCCCchHHHHHHHHHHHHHHH
Q 004461 34 ILQICLVILLTRGLAFILRPLR---QPRVIAEITGGILLGPSALG----RSERFLQ-AVFPPKSQTVLDTLANLGLIFFM 105 (752)
Q Consensus 34 l~~i~lil~~~~~~~~ll~rl~---~P~iv~~IlaGiilGP~~lg----~~~~~~~-~lfp~~~~~~l~~l~~lgl~~ll 105 (752)
++-.+++++++.+..+++++-| +|.-+.-++.|+++|-.... ..+...+ ..|.++ .+-.+-+=-+.
T Consensus 37 l~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~------~ff~vLLPpii 110 (575)
T KOG1965|consen 37 LLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPD------LFFLVLLPPII 110 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEeccc------HHHHHhhchhh
Confidence 4444666777788899999888 99999999999999843211 1110000 011110 11111222378
Q ss_pred HHHhhccChhhHHhcCchhhHHHHHHHHHH-HHHHHHHHHHhhhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHHccc
Q 004461 106 FLVGLELDPKSLRQTGKKALGIAIAGISLP-FALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKL 184 (752)
Q Consensus 106 F~~Gle~d~~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~l 184 (752)
|..|.+++-+.++++......+++.|..++ +++|.++.++....+..++++ ..++++|+++|.|++..+..++.|++
T Consensus 111 f~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f-~d~L~fGaliSATDPVtvLaIfnel~- 188 (575)
T KOG1965|consen 111 FNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSF-KDCLAFGALISATDPVTVLAIFNELG- 188 (575)
T ss_pred hcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccH-HHHHHHhhHhcccCchHHHHHHHHhC-
Confidence 999999999999999999999999887777 455555555433222334555 78999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhH---HH----HHHHHHHHHHHHHHHHHHHHHHHH-HhcCC-
Q 004461 185 LTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVP---VW----VFLSGCVFVICLTLFVPPTFKWMA-RQCHE- 255 (752)
Q Consensus 185 l~s~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~~~~~~~---~~----~~~~~v~~~~~~~~v~~~~~~~~~-~~~~e- 255 (752)
....+=.++.+++++||..+++++..+..........+.. +. .+...++.++.++++...+.+.+. |++|.
T Consensus 189 vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l~~~~~l 268 (575)
T KOG1965|consen 189 VDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYLRRTPSL 268 (575)
T ss_pred CCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence 6778899999999999999999998777665554332222 22 122233334334433333333332 23332
Q ss_pred ------------------------------------------CchHHHHHHHHHHHHHHhhHHHHHHHhhc-cccchhhc
Q 004461 256 ------------------------------------------GPFANALVEKVEDLVSGIFLPLYFVSSGL-KTNIATIQ 292 (752)
Q Consensus 256 ------------------------------------------g~~~~~l~~kl~~~~~~~~~piFFv~~Gl-~~d~~~l~ 292 (752)
.+-.+.-.+.+......+..-+-|.++|+ -++.....
T Consensus 269 E~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k~~ 348 (575)
T KOG1965|consen 269 ESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQKHV 348 (575)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccee
Confidence 11122333444455567777888999996 33433332
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC----------CChHHHHHHHHHhhhhHHHHHHHHHhhh-cc-----CCC
Q 004461 293 GLQSWGLLALVILTACLGKIVGTFVVSLSFK----------VPLREALALGILMNTKGLVELIVLNIGK-DR-----KVL 356 (752)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~----------~~~~~~~~lgl~l~~rG~v~l~l~~~~~-~~-----~~i 356 (752)
. ....++....++.+++|..-.+..+.+.+ ++.++-..++|.-..||.++++++..-. +. ..+
T Consensus 349 ~-~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~~~~~q~i 427 (575)
T KOG1965|consen 349 Y-KSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSPHTGGQTI 427 (575)
T ss_pred e-echHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccccccccccEE
Confidence 1 11234556666777888877766665543 3455566777755589999999985322 21 233
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhchhhh
Q 004461 357 NDQVFAIMILMAVVTTFMTTPLVMAVYKPARR 388 (752)
Q Consensus 357 ~~~~~~~lv~~~lv~t~i~~pl~~~l~~~~~~ 388 (752)
-..+..+.++.+++....+.|+++++....++
T Consensus 428 ~tttl~vVlfT~lv~Gg~T~pml~~L~~~~~~ 459 (575)
T KOG1965|consen 428 FTTTLVVVLFTVLVFGGSTKPMLSYLMISVGV 459 (575)
T ss_pred EEeeeeeeeeeeeeeCCccHHHHHHhcccccc
Confidence 33444455567777788889999998654443
No 25
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.43 E-value=4.1e-13 Score=125.09 Aligned_cols=133 Identities=20% Similarity=0.282 Sum_probs=96.0
Q ss_pred ceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHHH--
Q 004461 408 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAF-- 485 (752)
Q Consensus 408 ~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-- 485 (752)
.|||+|+|+++++..+++.+..++ +..+.+++++|+++................. ..+......
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la---~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 68 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELA---KRSGAEITLLHVIPPPPQYSFSAAEDEESEE-----------EAEEEEQARQA 68 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHH---HHHTCEEEEEEEEESCHCHHHHHHHHHHHHH-----------HHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHH---HhhCCeEEEEEeecccccccccccccccccc-----------ccchhhhhhhH
Confidence 489999999999999999999999 4588899999999876544332111110000 000000000
Q ss_pred --HHhhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEE
Q 004461 486 --EAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 563 (752)
Q Consensus 486 --~~~~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Il 563 (752)
+................+ ++.++|++.|++.++|+||||.|++.++.+.+ +||+++++++++||||.|+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~------~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 69 EAEEAEAEGGIVIEVVIESG---DVADAIIEFAEEHNADLIVMGSRGRSGLERLL------FGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp HHHHHHHHTTSEEEEEEEES---SHHHHHHHHHHHTTCSEEEEESSSTTSTTTSS------SHHHHHHHHHHTSSEEEEE
T ss_pred HHHHHhhhccceeEEEEEee---ccchhhhhccccccceeEEEeccCCCCccCCC------cCCHHHHHHHcCCCCEEEe
Confidence 111122344444555444 99999999999999999999999988888887 9999999999999999775
No 26
>PRK10116 universal stress protein UspC; Provisional
Probab=99.43 E-value=8.3e-13 Score=124.82 Aligned_cols=136 Identities=10% Similarity=0.050 Sum_probs=93.1
Q ss_pred ceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHHHHH
Q 004461 408 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 487 (752)
Q Consensus 408 ~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 487 (752)
.|||+++|+++++..+++.+..++ +..+.+++++|+++.+........... ....+ ...++..+.+++
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA---~~~~a~l~ll~v~~~~~~~~~~~~~~~-----~~~~~----~~~~~~~~~l~~ 71 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIA---RPVNGKISLITLASDPEMYNQFAAPML-----EDLRS----VMQEETQSFLDK 71 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHH---HHhCCEEEEEEEccCcccchhhhHHHH-----HHHHH----HHHHHHHHHHHH
Confidence 589999999999999999999999 446788999999865422111100000 00000 112223334455
Q ss_pred hhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEec
Q 004461 488 FQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILID 565 (752)
Q Consensus 488 ~~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv~ 565 (752)
+.+..+++...... ..+++.+.|+++|++.++||||||.|+++++.+ ++|++++|++++||||.|+..
T Consensus 72 ~~~~~~~~~~~~~~--~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~--------~~s~a~~v~~~~~~pVLvv~~ 139 (142)
T PRK10116 72 LIQDADYPIEKTFI--AYGELSEHILEVCRKHHFDLVICGNHNHSFFSR--------ASCSAKRVIASSEVDVLLVPL 139 (142)
T ss_pred HHHhcCCCeEEEEE--ecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHH--------HHHHHHHHHhcCCCCEEEEeC
Confidence 44445554432222 235999999999999999999999999876543 348999999999999987654
No 27
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.38 E-value=5.2e-10 Score=121.47 Aligned_cols=274 Identities=17% Similarity=0.252 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhhHHh---cCchh---hHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHH
Q 004461 92 VLDTLANLGLIFFMFLVGLELDPKSLRQ---TGKKA---LGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV 165 (752)
Q Consensus 92 ~l~~l~~lgl~~llF~~Gle~d~~~l~~---~~~~~---~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~ 165 (752)
..+.+.+.=+.+|.|.+|+|+..+.+.. +.||+ ..-++.|+++|.++-. .+.... . ...--+|+
T Consensus 62 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPaliy~----~~n~~~---~---~~~~GW~I 131 (423)
T PRK14853 62 LGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPALIYV----AVNLAG---G---GALRGWAI 131 (423)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHHHHHH----HHhCCc---h---hhhhhhhh
Confidence 3455666667789999999997664431 22222 3568888888876433 232210 0 11222333
Q ss_pred HHhhccHHHHHHHHHHccc-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHH-HHHHHHHHHHHHH-----
Q 004461 166 ALSITAFPVLARILAELKL-LTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPV-WVFLSGCVFVICL----- 238 (752)
Q Consensus 166 ~ls~Ts~~vv~~iL~el~l-l~s~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~-~~~~~~v~~~~~~----- 238 (752)
-+.|+.+....+|..+|. .++..+...++.+++||+.++++++++. +++. .+..+ +.....+++.++.
T Consensus 132 -p~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY---t~~i-~~~~L~~a~~~~~~l~~l~~~~V~ 206 (423)
T PRK14853 132 -PTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY---TSEL-NLEALLLALVPLALFWLLVQKRVR 206 (423)
T ss_pred -hhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc---CCCC-CHHHHHHHHHHHHHHHHHHHcCCc
Confidence 345888889999999885 4889999999999999999999988765 2221 11111 1111111111110
Q ss_pred ---HHHHHHHHHHHHHhcCC-----------------------C-----chHHHHHHHHHHHHHHhhHHHH-HHHhhccc
Q 004461 239 ---TLFVPPTFKWMARQCHE-----------------------G-----PFANALVEKVEDLVSGIFLPLY-FVSSGLKT 286 (752)
Q Consensus 239 ---~~v~~~~~~~~~~~~~e-----------------------g-----~~~~~l~~kl~~~~~~~~~piF-Fv~~Gl~~ 286 (752)
.+++--+..|..-.... + +..+++++++++++..+++|+| |+.+|.++
T Consensus 207 ~~~~Y~ilg~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~V~~~ILPLFAFANaGV~l 286 (423)
T PRK14853 207 KWWLLLPLGVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPLSAGVAVPVFAFFSAGVAI 286 (423)
T ss_pred hhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 00000112232111110 0 3357899999999999999999 99999999
Q ss_pred cc-hhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhHHHHHHHHHhhhc-cC
Q 004461 287 NI-ATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGLVELIVLNIGKD-RK 354 (752)
Q Consensus 287 d~-~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl~l~~rG~v~l~l~~~~~~-~~ 354 (752)
|. ..+.+...-.....+++..+++|.+|.+..++.. +++|++-..+|++-+.-=++++-+++.+.+ ..
T Consensus 287 ~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~L~GIGFTmSlFI~~LAf~~~~ 366 (423)
T PRK14853 287 GGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVALLAGIGFTVSLLIGELAFGGGS 366 (423)
T ss_pred cCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Confidence 86 4342111112455777888899999988776653 357888888888555545788888888883 22
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 004461 355 -VLNDQVFAIMILMAVVTTFMTTPLVMA 381 (752)
Q Consensus 355 -~i~~~~~~~lv~~~lv~t~i~~pl~~~ 381 (752)
.++..-..++ +.+++...+..-+++.
T Consensus 367 ~~~~~aKigil-~~S~~s~~~G~~~l~~ 393 (423)
T PRK14853 367 ARDDAVKVGVL-TGSLIAALLASVLLRL 393 (423)
T ss_pred hhHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3343334444 5555544443344443
No 28
>PRK11175 universal stress protein UspE; Provisional
Probab=99.33 E-value=2.2e-12 Score=138.32 Aligned_cols=143 Identities=15% Similarity=0.102 Sum_probs=97.4
Q ss_pred cceEEEEeecCCCh-------hHHHHHHHHhcCCCCCC-CceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCc
Q 004461 407 QFRILACFHSARNI-------PSTINLLEALRGIQKSE-GLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNP 478 (752)
Q Consensus 407 e~rILv~v~~s~~~-------~~~i~la~~la~~~~~~-~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (752)
..|||+|+|+++.. ..+++.+..++.. . +.+++++|+.+............. ....+.+ ...
T Consensus 152 ~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~---~~~a~l~ll~v~~~~~~~~~~~~~~~---~~~~~~~----~~~ 221 (305)
T PRK11175 152 GGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQ---LNHAEVHLVNAYPVTPINIAIELPEF---DPSVYND----AIR 221 (305)
T ss_pred CCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhh---CcCCceEEEEEecCcchhcccccccc---chhhHHH----HHH
Confidence 46899999998754 5799999999943 5 678899999865432110000000 0000000 111
Q ss_pred chHHHHHHHhhhccceEEE-EeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCC
Q 004461 479 NHIVVAFEAFQQLSRVSVR-PMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAP 557 (752)
Q Consensus 479 ~~i~~~~~~~~~~~~v~v~-~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~Ap 557 (752)
++..+.++++.+..++... ..+.. +++.+.|+++|+++++||||||+||++++.+.+ +||++++|++++|
T Consensus 222 ~~~~~~l~~~~~~~~~~~~~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~l------lGS~a~~v~~~~~ 292 (305)
T PRK11175 222 GQHLLAMKALRQKFGIDEEQTHVEE---GLPEEVIPDLAEHLDAELVILGTVGRTGLSAAF------LGNTAEHVIDHLN 292 (305)
T ss_pred HHHHHHHHHHHHHhCCChhheeecc---CCHHHHHHHHHHHhCCCEEEECCCccCCCccee------ecchHHHHHhcCC
Confidence 2233344555444444432 33333 489999999999999999999999999999888 9999999999999
Q ss_pred CceEEEecCCC
Q 004461 558 CSVGILIDRGL 568 (752)
Q Consensus 558 C~V~Ilv~rg~ 568 (752)
|||.++..+|+
T Consensus 293 ~pVLvv~~~~~ 303 (305)
T PRK11175 293 CDLLAIKPDGY 303 (305)
T ss_pred CCEEEEcCCCC
Confidence 99988776655
No 29
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=99.20 E-value=1e-10 Score=107.44 Aligned_cols=129 Identities=24% Similarity=0.290 Sum_probs=96.6
Q ss_pred eEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHHHHHh
Q 004461 409 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAF 488 (752)
Q Consensus 409 rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 488 (752)
|||+|+++++.+..+++.+..++. ..+.+++++|+.+............. ....++.++.+...
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~---~~~~~i~~l~v~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~ 64 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLAR---RLGAELVLLHVVDPPPSSAAELAELL-------------EEEARALLEALREA 64 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHH---hcCCEEEEEEEecCCCCcchhHHHHH-------------HHHHHHHHHHHHHH
Confidence 699999999999999999999994 46788999999875543221000000 01123444444443
Q ss_pred hhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEE
Q 004461 489 QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 562 (752)
Q Consensus 489 ~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~I 562 (752)
....+++++.....+ +..++|++.+++.++|++|||++++..+.+.+ +|++.++++++++|||.+
T Consensus 65 ~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~~------~~~~~~~ll~~~~~pvli 129 (130)
T cd00293 65 LAEAGVKVETVVLEG---DPAEAILEAAEELGADLIVMGSRGRSGLRRLL------LGSVAERVLRHAPCPVLV 129 (130)
T ss_pred HhcCCCceEEEEecC---CCHHHHHHHHHHcCCCEEEEcCCCCCccceee------eccHHHHHHhCCCCCEEe
Confidence 334667777776655 56899999999999999999999988776667 999999999999999865
No 30
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.12 E-value=7.7e-09 Score=105.54 Aligned_cols=292 Identities=14% Similarity=0.220 Sum_probs=189.1
Q ss_pred HHHcccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccChhhHHhcCchhhHHH
Q 004461 49 FILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIA 128 (752)
Q Consensus 49 ~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~ 128 (752)
++=+++-+...+--.+.|+++||..+++..+.. =.+.......++.+-+-.=.|.++.|+....+.++++..+++-
T Consensus 31 yikekLllgEa~va~itGlI~Gphvlnlfdp~~----wgn~d~it~ei~RvvLcvqvfava~eLPr~Y~l~~w~Si~vll 106 (467)
T KOG4505|consen 31 YIKEKLLLGEATVAVITGLIFGPHVLNLFDPNS----WGNKDYITYEISRVVLCVQVFAVAMELPRAYMLEHWRSIFVLL 106 (467)
T ss_pred HHHHhHhccchHHhhhhheeechhhhhhcCCcc----ccCcchhhhhhhhhhHhHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 344556666666777899999999988765310 0122345566777778888999999999999999999877665
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHHcc---ccCCchHHHHHHHHHHHHHHHH
Q 004461 129 IAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELK---LLTADVGRMAMSAAAVNDVAAW 205 (752)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~---ll~s~~g~l~l~~a~i~D~~~~ 205 (752)
+.-++.-..+.++..|.+.+ ..++ ..++.++..++.|++.....+..+-+ ..+.++..+..+++..||..++
T Consensus 107 lpVmi~gwlvs~~fvy~l~p----~lnf-~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGcNDGMai 181 (467)
T KOG4505|consen 107 LPVMIIGWLVSFGFVYALIP----NLNF-LTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCNDGMAI 181 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhc----cccH-HHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCCCCCcch
Confidence 44444444444444455543 3344 67899999999999655555554433 3556788899999999999999
Q ss_pred HHHHHHHHHhcCCCC-----Ch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC-------------------
Q 004461 206 ILLALAVALSGSGQS-----SL---VPVWVFLSGCVFVICLTLFVPPTFKWMARQC---HE------------------- 255 (752)
Q Consensus 206 ~ll~v~~~~~~~~~~-----~~---~~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~---~e------------------- 255 (752)
.++.+..-+...+.. ++ ..+..-.-.++++.+++++.|..+++..+++ .|
T Consensus 182 pflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid~eSfl~~~vvl~lfc~gigti 261 (467)
T KOG4505|consen 182 PFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLIDRESFLIFYVVLALFCMGIGTI 261 (467)
T ss_pred hHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhhhhe
Confidence 998777665443221 11 1122222334556667777777777776655 22
Q ss_pred ------------Cc-------hH-HHHHHHHHHHHHHhhHHHHHHHhhccccchhhchh----hhHHHHHHHHHHHHHHH
Q 004461 256 ------------GP-------FA-NALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGL----QSWGLLALVILTACLGK 311 (752)
Q Consensus 256 ------------g~-------~~-~~l~~kl~~~~~~~~~piFFv~~Gl~~d~~~l~~~----~~~~~~~~~~~~~~~~K 311 (752)
|. +. ++-..++..++..++.-.||++.|..++.+.++.. ..|- .+++.+..++.|
T Consensus 262 iGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwr-lvilsi~iif~R 340 (467)
T KOG4505|consen 262 IGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWR-LVILSITIIFIR 340 (467)
T ss_pred echhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHH-HHHHHHHHHHhc
Confidence 11 11 12233566677778888999999999998887643 2343 334444444444
Q ss_pred -HHHHHHHHHhc--CCChHHHHHHHHHhhhhHHHHHHHHHhhh
Q 004461 312 -IVGTFVVSLSF--KVPLREALALGILMNTKGLVELIVLNIGK 351 (752)
Q Consensus 312 -~~~~~l~~~~~--~~~~~~~~~lgl~l~~rG~v~l~l~~~~~ 351 (752)
+-.+++.-.+. =.+|||++.+|. .+|.|.-++..+..+.
T Consensus 341 Rip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~allar 382 (467)
T KOG4505|consen 341 RIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLAR 382 (467)
T ss_pred ccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHHH
Confidence 33333221111 137999999999 8999988887776553
No 31
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=99.11 E-value=4e-10 Score=107.24 Aligned_cols=144 Identities=19% Similarity=0.215 Sum_probs=100.1
Q ss_pred cceEEEEee-cCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHHH
Q 004461 407 QFRILACFH-SARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAF 485 (752)
Q Consensus 407 e~rILv~v~-~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 485 (752)
..+|++++| +++.+..+.+.+...+.. ....++++|+++....................... .....++..+..
T Consensus 5 ~~~il~~~d~~s~~~~~a~~~a~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 79 (154)
T COG0589 5 YKKILVAVDVGSEAAEKALEEAVALAKR---LGAPLILLVVIDPLEPTALVSVALADAPIPLSEEE--LEEEAEELLAEA 79 (154)
T ss_pred cceEEEEeCCCCHHHHHHHHHHHHHHHh---cCCeEEEEEEecccccccccccccccchhhhhHHH--HHHHHHHHHHHH
Confidence 468999999 999999999999999944 66667888888654432211100000000000000 002235555556
Q ss_pred HHhhhccceE-EEEeEEecCCCCh-HHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEE
Q 004461 486 EAFQQLSRVS-VRPMTAISSMSDM-HEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 563 (752)
Q Consensus 486 ~~~~~~~~v~-v~~~~~v~~~~~~-~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Il 563 (752)
++..++.++. ++.....+ ++ .+.|++.|.+.++|+||||.+|++++++.+ +||++++|++++||||.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~g---~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~l------lGsvs~~v~~~~~~pVlvv 150 (154)
T COG0589 80 KALAEAAGVPVVETEVVEG---SPSAEEILELAEEEDADLIVVGSRGRSGLSRLL------LGSVAEKVLRHAPCPVLVV 150 (154)
T ss_pred HHHHHHcCCCeeEEEEecC---CCcHHHHHHHHHHhCCCEEEECCCCCcccccee------eehhHHHHHhcCCCCEEEE
Confidence 6655555555 46666555 66 799999999999999999999999998877 9999999999999998765
Q ss_pred e
Q 004461 564 I 564 (752)
Q Consensus 564 v 564 (752)
.
T Consensus 151 ~ 151 (154)
T COG0589 151 R 151 (154)
T ss_pred c
Confidence 4
No 32
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.99 E-value=4e-09 Score=100.04 Aligned_cols=136 Identities=15% Similarity=0.166 Sum_probs=87.3
Q ss_pred EEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccc---c---CCcCccccHHHHHHHHHhhcCCCCCe
Q 004461 582 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVS---V---DMAGNASMDEEVLSEFKLKTSRNGSV 655 (752)
Q Consensus 582 ~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~~~---~---~~~~~~~~d~~~l~e~~~~~~~~~~v 655 (752)
+|+++++|++.++.|+++|.++|+..++++++++++++......... . ..++.++..++.++++...... ..+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 79 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCSR-KGV 79 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCC
Confidence 48999999999999999999999999999999999875322100000 0 0001112234555555544322 223
Q ss_pred EEEEEEec--ChHHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccc-cchhhhccCCCCceeEEEEEe
Q 004461 656 RYEERLVR--NTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELG-PVGSLLTSLEFSTASVLIIQQ 726 (752)
Q Consensus 656 ~~~e~~v~--~g~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG-~igd~las~~~~~~svLvvqq 726 (752)
.+....+. +..+++....+..++||||||+|+ ..|+.++ .+| ++.+.++..--..+||||||.
T Consensus 80 ~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g----~~~l~~~----~~gssva~~Vi~~a~~~c~Vlvv~~ 145 (146)
T cd01989 80 QCEDVVLEDDDVAKAIVEYVADHGITKLVMGASS----DNHFSMK----FKKSDVASSVLKEAPDFCTVYVVSK 145 (146)
T ss_pred eEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccC----CCceeec----ccCCchhHHHHhcCCCCceEEEEeC
Confidence 33333332 445444333333349999999999 7787765 577 699999886421179999984
No 33
>PRK15005 universal stress protein F; Provisional
Probab=98.94 E-value=5.7e-09 Score=98.70 Aligned_cols=133 Identities=12% Similarity=0.082 Sum_probs=83.5
Q ss_pred ceEEEEEccCCcc--hHHHHHHHHHHhhCCCeEEEEEEEeecccccCCc---cccCC---cCccccHHHHHHHHHhhcCC
Q 004461 580 SYTITVLFFGGRD--DREALACGARMAEHPGISFIVIRFLLAADAIGNT---VSVDM---AGNASMDEEVLSEFKLKTSR 651 (752)
Q Consensus 580 ~~~I~v~~~gg~d--dreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~---~~~~~---~~~~~~d~~~l~e~~~~~~~ 651 (752)
+++|++|+||+++ ++.|+++|.++|+..++++++++++++....... ...+. ++.++..++.++++..+...
T Consensus 2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (144)
T PRK15005 2 NRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKL 81 (144)
T ss_pred CccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhCC
Confidence 4689999999998 4799999999999999999999999752211000 00000 01111122445555544322
Q ss_pred CC-CeEEEEEEecChHHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccccchhhhccCCCCc-eeEEEEE
Q 004461 652 NG-SVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQ 725 (752)
Q Consensus 652 ~~-~v~~~e~~v~~g~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~-~svLvvq 725 (752)
.+ .+ ......+++.+.+....+..++||||||+|+ .|+.+| .+|+..+.++.. + +|||||.
T Consensus 82 ~~~~~-~~~v~~G~p~~~I~~~a~~~~~DLIV~Gs~~-----~~~~~~----llGS~a~~vl~~---a~cpVlvVr 144 (144)
T PRK15005 82 PTDRV-HVHVEEGSPKDRILELAKKIPADMIIIASHR-----PDITTY----LLGSNAAAVVRH---AECSVLVVR 144 (144)
T ss_pred CCCce-EEEEeCCCHHHHHHHHHHHcCCCEEEEeCCC-----CCchhe----eecchHHHHHHh---CCCCEEEeC
Confidence 22 12 1222234555544333333349999999987 366665 689999999994 4 8999983
No 34
>PRK09982 universal stress protein UspD; Provisional
Probab=98.87 E-value=7e-09 Score=98.07 Aligned_cols=131 Identities=14% Similarity=0.098 Sum_probs=82.1
Q ss_pred ceEEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccc-cC--C--cCccccHHHHHHHHHhhcCCCCC
Q 004461 580 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVS-VD--M--AGNASMDEEVLSEFKLKTSRNGS 654 (752)
Q Consensus 580 ~~~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~~~-~~--~--~~~~~~d~~~l~e~~~~~~~~~~ 654 (752)
+++|++|.||+++++.|+++|.++|+.+++++++++++++......... .. + +..++..++.+++.+..... ..
T Consensus 3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~ 81 (142)
T PRK09982 3 YKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQW-PK 81 (142)
T ss_pred ceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhcCC-Cc
Confidence 5799999999999999999999999999999999999864321100000 00 0 01111222445555544321 22
Q ss_pred eEEEEEEecChHHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccccchhhhccCCCCceeEEEEE
Q 004461 655 VRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQ 725 (752)
Q Consensus 655 v~~~e~~v~~g~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvvq 725 (752)
+. .....+++.+++....+..++||||||+|+ +|+.+| +| +.+.++..-- .|||||-
T Consensus 82 ~~-~~v~~G~p~~~I~~~A~~~~aDLIVmG~~~-----~~~~~~-----~~-va~~V~~~s~--~pVLvv~ 138 (142)
T PRK09982 82 TK-LRIERGEMPETLLEIMQKEQCDLLVCGHHH-----SFINRL-----MP-AYRGMINKMS--ADLLIVP 138 (142)
T ss_pred ce-EEEEecCHHHHHHHHHHHcCCCEEEEeCCh-----hHHHHH-----HH-HHHHHHhcCC--CCEEEec
Confidence 22 222346666666555544459999999764 566666 35 7777777322 7888873
No 35
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=98.83 E-value=3.1e-08 Score=91.84 Aligned_cols=131 Identities=15% Similarity=0.146 Sum_probs=82.8
Q ss_pred EEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhcCCC-CCeEEEEE
Q 004461 582 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRN-GSVRYEER 660 (752)
Q Consensus 582 ~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~-~~v~~~e~ 660 (752)
||++|.+|+++++.++++|.+||+..+++++++++.++...... ...+..++..++.+++........ ..+.+...
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 77 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSP---SQLEVNVQRARKLLRQAERIAASLGVPVHTIIR 77 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCc---chhHHHHHHHHHHHHHHHHHhhhcCCceEEEEE
Confidence 68999999999999999999999999999999999975332100 001111222335555554433221 12222222
Q ss_pred EecChHHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccccchhhhccCCCCceeEEEEE
Q 004461 661 LVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQ 725 (752)
Q Consensus 661 ~v~~g~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvvq 725 (752)
.-++..+.+....+..++|||+||+++ .+++.+| .+|+..+.+...-- +|||||+
T Consensus 78 ~~~~~~~~I~~~a~~~~~dlIV~G~~~----~~~~~~~----~lGs~~~~v~~~~~--~pvlvv~ 132 (132)
T cd01988 78 IDHDIASGILRTAKERQADLIIMGWHG----STSLRDR----LFGGVIDQVLESAP--CDVAVVK 132 (132)
T ss_pred ecCCHHHHHHHHHHhcCCCEEEEecCC----CCCccce----ecCchHHHHHhcCC--CCEEEeC
Confidence 223443433333332339999999999 4444443 79999999997322 7999985
No 36
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=98.81 E-value=9.6e-07 Score=94.46 Aligned_cols=240 Identities=18% Similarity=0.287 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhhHHh---cCchh---hHHHHHHHHHHHHHHHHHHHHhhhh---hccCCchhHHHHH
Q 004461 92 VLDTLANLGLIFFMFLVGLELDPKSLRQ---TGKKA---LGIAIAGISLPFALGIGSSFLLRET---ISKGVDSTSFLVF 162 (752)
Q Consensus 92 ~l~~l~~lgl~~llF~~Gle~d~~~l~~---~~~~~---~~i~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~l~ 162 (752)
..+.+.+.=+.+|.|.+|+|+..+.+.. +.||+ ..-++.|+++|.++=. .+... ...+|
T Consensus 52 l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy~----~~n~~~~~~~~GW-------- 119 (373)
T TIGR00773 52 LLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIYL----AFNANDPITREGW-------- 119 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHh----heecCCCcccCcc--------
Confidence 3455666667789999999999887653 33333 3457788888876422 22211 11233
Q ss_pred HHHHHh-hccHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHH---
Q 004461 163 MGVALS-ITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICL--- 238 (752)
Q Consensus 163 l~~~ls-~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~--- 238 (752)
|+-++ -++|+.-+..+-..+ .+..+....++-+++||+.++++.++..+ ++ ....+...+.+++.++.
T Consensus 120 -~IP~ATDiAFalgvlallG~~-vP~~lr~FLl~LAIvDDlgaI~vIA~FYt---~~---i~~~~L~~a~~~~~~l~~~~ 191 (373)
T TIGR00773 120 -AIPAATDIAFALGVMALLGKR-VPLALKIFLLALAIIDDLGAIVIIALFYT---ND---LSMAALLVAAVAIAVLAVLN 191 (373)
T ss_pred -ccccHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhHhheeeecC---CC---CCHHHHHHHHHHHHHHHHHH
Confidence 22222 133333332222223 56777889999999999999988876542 11 22333333322221111
Q ss_pred --------HHHHHHHHHHHHHhcCC--------------C-------chHHHHHHHHHHHHHHhhHHHH-HHHhhccccc
Q 004461 239 --------TLFVPPTFKWMARQCHE--------------G-------PFANALVEKVEDLVSGIFLPLY-FVSSGLKTNI 288 (752)
Q Consensus 239 --------~~v~~~~~~~~~~~~~e--------------g-------~~~~~l~~kl~~~~~~~~~piF-Fv~~Gl~~d~ 288 (752)
.++.--+..|..-.... + .-.+++++.+++.+..+++|+| |+..|.++|.
T Consensus 192 ~~~v~~~~~y~~lgvllW~~~~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~lilPlFAFanAGv~l~~ 271 (373)
T TIGR00773 192 RCGVRRLGPYMLVGVILWFAVLKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLILPLFAFANAGVSLQG 271 (373)
T ss_pred HcCCchhhHHHHHHHHHHHHHHHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCeeeec
Confidence 11111122232222111 1 1135667777777888999999 9999999987
Q ss_pred hhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhHHHHHHHHHhhhc
Q 004461 289 ATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGLVELIVLNIGKD 352 (752)
Q Consensus 289 ~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl~l~~rG~v~l~l~~~~~~ 352 (752)
..+.. ........+++..+++|.+|++..++.. +++|++-..+|++-+.-=++++-+.+.+.+
T Consensus 272 ~~~~~-~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGFTmSlfI~~LAf~ 344 (373)
T TIGR00773 272 VSLNG-LTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGFTMSIFIASLAFG 344 (373)
T ss_pred Ccchh-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55432 2223466788888999999999887763 357888888888555544788888888874
No 37
>PRK15456 universal stress protein UspG; Provisional
Probab=98.79 E-value=3.3e-08 Score=93.42 Aligned_cols=133 Identities=14% Similarity=0.092 Sum_probs=81.3
Q ss_pred ceEEEEEccCCc--chHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccc-cC-Cc---CccccHHHHHHHHHhhcCCC
Q 004461 580 SYTITVLFFGGR--DDREALACGARMAEHPGISFIVIRFLLAADAIGNTVS-VD-MA---GNASMDEEVLSEFKLKTSRN 652 (752)
Q Consensus 580 ~~~I~v~~~gg~--ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~~~-~~-~~---~~~~~d~~~l~e~~~~~~~~ 652 (752)
++||++|+||++ .++.|+++|.++|+.. .+++++++.++......... .+ ++ ..++..++.++++..+....
T Consensus 2 ~~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (142)
T PRK15456 2 YKTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTID 80 (142)
T ss_pred CccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 479999999994 8999999999999875 69999999875321100000 00 00 11122234455555443221
Q ss_pred C-CeEEEEEEecChHHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccccchhhhccCCCCceeEEEEE
Q 004461 653 G-SVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQ 725 (752)
Q Consensus 653 ~-~v~~~e~~v~~g~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvvq 725 (752)
+ .+.. ....+++.+++....+..++||||||+|| . |+.++ .+|+.++.++..-- +|||||.
T Consensus 81 ~~~v~~-~v~~G~~~~~I~~~a~~~~~DLIVmG~~g----~-~~~~~----llGS~a~~v~~~a~--~pVLvV~ 142 (142)
T PRK15456 81 PSRIKQ-HVRFGSVRDEVNELAEELGADVVVIGSRN----P-SISTH----LLGSNASSVIRHAN--LPVLVVR 142 (142)
T ss_pred CcceEE-EEcCCChHHHHHHHHhhcCCCEEEEcCCC----C-Cccce----ecCccHHHHHHcCC--CCEEEeC
Confidence 1 2221 22234455444333333349999999998 4 35544 68999999999422 7999983
No 38
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.78 E-value=1.8e-08 Score=93.52 Aligned_cols=132 Identities=19% Similarity=0.221 Sum_probs=88.0
Q ss_pred ceEEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHH-----HHHhhcCCCCC
Q 004461 580 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLS-----EFKLKTSRNGS 654 (752)
Q Consensus 580 ~~~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~~~~d~~~l~-----e~~~~~~~~~~ 654 (752)
++||++++++++++++|+++|.++|+..+++++++++.+....................+.... +.... ....
T Consensus 2 ~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 79 (140)
T PF00582_consen 2 YKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAEA--EGGI 79 (140)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTS
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHhh--hccc
Confidence 4799999999999999999999999999999999999986443200000000000000000000 00111 1334
Q ss_pred eEEEEEEecChHHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccccchhhhccCCCCc-eeEEEE
Q 004461 655 VRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLII 724 (752)
Q Consensus 655 v~~~e~~v~~g~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~-~svLvv 724 (752)
..+.....++..+.+....+..++|||+||+++ ..++.+| .+|.+.+.++. .+ +|||||
T Consensus 80 ~~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~----~~~~~~~----~~gs~~~~l~~---~~~~pVlvv 139 (140)
T PF00582_consen 80 VIEVVIESGDVADAIIEFAEEHNADLIVMGSRG----RSGLERL----LFGSVAEKLLR---HAPCPVLVV 139 (140)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCSEEEEESSS----TTSTTTS----SSHHHHHHHHH---HTSSEEEEE
T ss_pred eeEEEEEeeccchhhhhccccccceeEEEeccC----CCCccCC----CcCCHHHHHHH---cCCCCEEEe
Confidence 555666667776665555554559999999999 6677776 59999999999 44 799998
No 39
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=98.67 E-value=7.6e-08 Score=91.06 Aligned_cols=132 Identities=11% Similarity=0.057 Sum_probs=79.6
Q ss_pred ceEEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeecccccCCc-cccC-CcCcccc---HHHHHHHHHhhcCCCCC
Q 004461 580 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNT-VSVD-MAGNASM---DEEVLSEFKLKTSRNGS 654 (752)
Q Consensus 580 ~~~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~-~~~~-~~~~~~~---d~~~l~e~~~~~~~~~~ 654 (752)
++||++|.||++.++.|+++|..+|+.++++++++++..+....... .... ++..++. .++.++++..+. .-.
T Consensus 3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~ 80 (144)
T PRK15118 3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELSTNA--GYP 80 (144)
T ss_pred ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHhC--CCC
Confidence 57999999999999999999999999999999999995331110000 0000 0001111 113333433221 111
Q ss_pred eEEEEEEecChHHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccccchhhhccCCCCceeEEEEEe
Q 004461 655 VRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQQ 726 (752)
Q Consensus 655 v~~~e~~v~~g~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvvqq 726 (752)
+.......+++.+++....+..++||||||+|+ . ++. .+|+..+.++..-- +|||||..
T Consensus 81 ~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~----~-~~~------~lgSva~~v~~~a~--~pVLvv~~ 139 (144)
T PRK15118 81 ITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQ----D-FWS------KLMSSARQLINTVH--VDMLIVPL 139 (144)
T ss_pred ceEEEEEecCHHHHHHHHHHHhCCCEEEEeCcc----c-HHH------HHHHHHHHHHhhCC--CCEEEecC
Confidence 111222245565544444333349999999998 2 222 27899999998432 79999985
No 40
>PRK10116 universal stress protein UspC; Provisional
Probab=98.66 E-value=5.6e-08 Score=91.70 Aligned_cols=129 Identities=11% Similarity=0.083 Sum_probs=79.0
Q ss_pred ceEEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeecccccCCcccc--CC--cCccccHHHHHHHHHhhcCCCCCe
Q 004461 580 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSV--DM--AGNASMDEEVLSEFKLKTSRNGSV 655 (752)
Q Consensus 580 ~~~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~~~~--~~--~~~~~~d~~~l~e~~~~~~~~~~v 655 (752)
+++|+++++++++++.|+++|.++|+..++++|++++.++.......... ++ +..++..+++++++..+. +-..
T Consensus 3 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~ 80 (142)
T PRK10116 3 YSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDA--DYPI 80 (142)
T ss_pred CceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCe
Confidence 57999999999999999999999999999999999998542110000000 00 011111234455544332 1111
Q ss_pred EEEEEEecChHHHHHHHHhcc--CCCEEEEccCCCccccccccCCCCCCccccchhhhccCCCCc-eeEEEEE
Q 004461 656 RYEERLVRNTAETIAVIREVS--RCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQ 725 (752)
Q Consensus 656 ~~~e~~v~~g~~~~~~i~~~~--~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~-~svLvvq 725 (752)
.......++..+ .+++... ++||||+|+|+ .+++.++ ++.++.++. .+ +|||||-
T Consensus 81 ~~~~~~~G~~~~--~I~~~a~~~~~DLiV~g~~~----~~~~~~~------~s~a~~v~~---~~~~pVLvv~ 138 (142)
T PRK10116 81 EKTFIAYGELSE--HILEVCRKHHFDLVICGNHN----HSFFSRA------SCSAKRVIA---SSEVDVLLVP 138 (142)
T ss_pred EEEEEecCCHHH--HHHHHHHHhCCCEEEEcCCc----chHHHHH------HHHHHHHHh---cCCCCEEEEe
Confidence 111222344444 3444333 49999999999 6677654 356777777 44 7999984
No 41
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.65 E-value=1.3e-07 Score=86.88 Aligned_cols=123 Identities=15% Similarity=0.088 Sum_probs=82.4
Q ss_pred EEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhcCCCCCeEEEEEE
Q 004461 582 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERL 661 (752)
Q Consensus 582 ~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~v~~~e~~ 661 (752)
||+++++|++.+++++.+|.++|++.+++++++++.+++... ..+..++.+++++...... .+.+....
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~----------~~~~~~~~l~~~~~~~~~~-~~~~~~~~ 69 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNR----------LSEAERRRLAEALRLAEEL-GAEVVTLP 69 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCcccc----------CCHHHHHHHHHHHHHHHHc-CCEEEEEe
Confidence 689999999999999999999999999999999999754321 1111234444444332211 12233222
Q ss_pred ecChHHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccccchhhhccCCCCceeEEEE
Q 004461 662 VRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLII 724 (752)
Q Consensus 662 v~~g~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvv 724 (752)
-.+..+.+....+..++|++++|+|+ ..++.++ .+|+..+.++..--. .+|||+
T Consensus 70 ~~~~~~~I~~~~~~~~~dllviG~~~----~~~~~~~----~~Gs~~~~v~~~a~~-~~v~v~ 123 (124)
T cd01987 70 GDDVAEAIVEFAREHNVTQIVVGKSR----RSRWREL----FRGSLVDRLLRRAGN-IDVHIV 123 (124)
T ss_pred CCcHHHHHHHHHHHcCCCEEEeCCCC----CchHHHH----hcccHHHHHHHhCCC-CeEEEe
Confidence 23444433333333349999999999 6667766 789999999986412 588886
No 42
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.65 E-value=6.4e-06 Score=89.61 Aligned_cols=268 Identities=18% Similarity=0.294 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhhHHh---cCchh---hHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHH
Q 004461 92 VLDTLANLGLIFFMFLVGLELDPKSLRQ---TGKKA---LGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV 165 (752)
Q Consensus 92 ~l~~l~~lgl~~llF~~Gle~d~~~l~~---~~~~~---~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~ 165 (752)
..+.+.+.-+.+|.|.+|+|+..+.+.. +.|++ ..-+++|+++|.++= +.+...- + ..--+|+
T Consensus 68 l~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY----~~~n~~~--~-----~~~GWgI 136 (438)
T PRK14856 68 LHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIY----FFLNADT--P-----SQHGFGI 136 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHH----hheecCC--C-----ccCcccc
Confidence 4455666677789999999999887653 33333 345777888887642 2222110 0 0112333
Q ss_pred HHhhccHHHHHHHHHHccc-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHH------
Q 004461 166 ALSITAFPVLARILAELKL-LTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICL------ 238 (752)
Q Consensus 166 ~ls~Ts~~vv~~iL~el~l-l~s~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~------ 238 (752)
-++ |+.+-...++.=+|- .++.+....++-+++||+.++++.+++.. .+ ....++.++.+++.++.
T Consensus 137 PmA-TDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~---i~~~~L~~a~~~~~~l~~ln~~~ 209 (438)
T PRK14856 137 PMA-TDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT---TN---LKFAWLLGALGVVLVLAVLNRLN 209 (438)
T ss_pred ccH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---CC---CcHHHHHHHHHHHHHHHHHHHcC
Confidence 222 333333333333332 56678888999999999999988876542 11 12223222222211111
Q ss_pred -----HHHHHHHHHHHHHhcCC-------------------C--------------------------------------
Q 004461 239 -----TLFVPPTFKWMARQCHE-------------------G-------------------------------------- 256 (752)
Q Consensus 239 -----~~v~~~~~~~~~~~~~e-------------------g-------------------------------------- 256 (752)
.|++--+..|+.-..+. .
T Consensus 210 v~~~~~Y~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (438)
T PRK14856 210 VRSLIPYLLLGVLLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGALLTKEQQEILHSIEEKA 289 (438)
T ss_pred CccccHHHHHHHHHHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccccccccchhhhhhhhhhcc
Confidence 01111112222111100 0
Q ss_pred ----chHHHHHHHHHHHHHHhhHHHH-HHHhhccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc---------
Q 004461 257 ----PFANALVEKVEDLVSGIFLPLY-FVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF--------- 322 (752)
Q Consensus 257 ----~~~~~l~~kl~~~~~~~~~piF-Fv~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~--------- 322 (752)
+-.+++++.+.+.+..+.+|+| |+-.|..++...... .-.....+++..++||.+|.+..++..
T Consensus 290 ~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~--~~pv~lGI~~GLvvGK~lGI~~~s~lavkl~~a~lP 367 (438)
T PRK14856 290 SALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLE--VDKVLLGVILGLCLGKPLGIFLITFISEKLKITARP 367 (438)
T ss_pred cccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhc--cCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCC
Confidence 0124566777788888999999 888999987542221 122344566777889999888777653
Q ss_pred -CCChHHHHHHHHHhhhhHHHHHHHHHhhhcc--C-CCCHHHHHHHHHHHHHHHHHHHHHHH
Q 004461 323 -KVPLREALALGILMNTKGLVELIVLNIGKDR--K-VLNDQVFAIMILMAVVTTFMTTPLVM 380 (752)
Q Consensus 323 -~~~~~~~~~lgl~l~~rG~v~l~l~~~~~~~--~-~i~~~~~~~lv~~~lv~t~i~~pl~~ 380 (752)
+++|++-.-+|++-+.-=++++-+++.+.+. . ..++.-..++ +.+++...+..-+++
T Consensus 368 ~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~~~aKigIL-~gS~lsai~G~~~L~ 428 (438)
T PRK14856 368 KGISWWHILGAGLLAGIGFTMSMFISNLAFTSEHKDAMEVAKIAIL-LGSLISGIIGALYLF 428 (438)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3578888888885454447888888888843 2 3444334444 455453333333333
No 43
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=98.60 E-value=1.9e-07 Score=100.78 Aligned_cols=110 Identities=13% Similarity=0.072 Sum_probs=76.4
Q ss_pred cceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHHHH
Q 004461 407 QFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFE 486 (752)
Q Consensus 407 e~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 486 (752)
-.|||+|+|+|+++.++++.|..+++. ...+.+++++||++....... .... . ...+++++..+
T Consensus 5 ykkILVavDGSe~S~~Al~~AielA~~-~g~~AeL~lL~Vv~~~~~~~~---~~~~----~--------~~~eelle~~~ 68 (357)
T PRK12652 5 ANRLLVPVADSVTVRQTVAYAVESAEE-AAETPTVHLVAAASGRAVDPE---GQDE----L--------AAAEELLERVE 68 (357)
T ss_pred cCeEEEEeCCCHHHHHHHHHHHHHHHh-cCCCCEEEEEEEecCcccccc---hhHH----H--------HHHHHHHHHHH
Confidence 468999999999999999999999943 113689999999974321111 0000 0 12334444444
Q ss_pred Hhhhc------cceEEEEeEEec-----CCCChHHHHHHHHHhcCccEEEecCCccc
Q 004461 487 AFQQL------SRVSVRPMTAIS-----SMSDMHEDICTTAESKRAAIIILPFHKHQ 532 (752)
Q Consensus 487 ~~~~~------~~v~v~~~~~v~-----~~~~~~~~I~~~A~e~~adLIImg~hg~~ 532 (752)
+..++ .++++++.+..+ ..+++++.|+++|+|+++||||||-.-+.
T Consensus 69 ~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~ 125 (357)
T PRK12652 69 VWATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNP 125 (357)
T ss_pred HHHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 44332 578888777652 12599999999999999999999965443
No 44
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=98.43 E-value=4e-05 Score=82.31 Aligned_cols=240 Identities=18% Similarity=0.248 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhhHHh---cCchh---hHHHHHHHHHHHHHHHHHHHHhhhh---hccCCchhHHHHH
Q 004461 92 VLDTLANLGLIFFMFLVGLELDPKSLRQ---TGKKA---LGIAIAGISLPFALGIGSSFLLRET---ISKGVDSTSFLVF 162 (752)
Q Consensus 92 ~l~~l~~lgl~~llF~~Gle~d~~~l~~---~~~~~---~~i~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~l~ 162 (752)
..+.+.+.=+.+|.|.+|+|+..+.+.. +.|++ ..-++.|+++|.++=+ .+... ...+|
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~----~~n~g~~~~~~GW-------- 126 (389)
T PRK09560 59 LLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYA----AFNYNNPETLRGW-------- 126 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHh----eeecCCCcccCcc--------
Confidence 3455556666779999999999887653 33333 3457788888876432 22211 01233
Q ss_pred HHHHHhhccHHHHHHHHHHcc-ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHH---
Q 004461 163 MGVALSITAFPVLARILAELK-LLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICL--- 238 (752)
Q Consensus 163 l~~~ls~Ts~~vv~~iL~el~-ll~s~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~--- 238 (752)
|+-++ |+.+-...++.=+| ..+..+....++-+++||+.++++.++... ++ ....++..+.+++.++.
T Consensus 127 -gIPmA-TDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt---~~---i~~~~L~~a~~~~~~l~~ln 198 (389)
T PRK09560 127 -AIPAA-TDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT---SD---LSLPALALAAIAIAVLFLLN 198 (389)
T ss_pred -ccccH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC---CC---CCHHHHHHHHHHHHHHHHHH
Confidence 22222 33333333333232 256677889999999999999988876542 11 22333333322222211
Q ss_pred --------HHHHHHHHHHHHHhcCC--------------------C---chHHHHHHHHHHHHHHhhHHHH-HHHhhccc
Q 004461 239 --------TLFVPPTFKWMARQCHE--------------------G---PFANALVEKVEDLVSGIFLPLY-FVSSGLKT 286 (752)
Q Consensus 239 --------~~v~~~~~~~~~~~~~e--------------------g---~~~~~l~~kl~~~~~~~~~piF-Fv~~Gl~~ 286 (752)
.|+.--+..|..-..+. + .-.+++++++++.+..+.+|+| |+-.|..+
T Consensus 199 ~~~v~~~~~Y~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~IlPlFAlaNAGV~l 278 (389)
T PRK09560 199 RLGVTKLTPYLIVGAILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFAILPLFAFANAGVSL 278 (389)
T ss_pred HcCCccchHHHHHHHHHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhhhHHHHHhhcCCeee
Confidence 11111223343322211 1 1146788889999888889999 78888888
Q ss_pred cchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhHHHHHHHHHhhhc
Q 004461 287 NIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGLVELIVLNIGKD 352 (752)
Q Consensus 287 d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl~l~~rG~v~l~l~~~~~~ 352 (752)
+-..+.. ..-.....+++..++||.+|.+..++.. +++|++-..+|++-+.-=++++-+++.+..
T Consensus 279 ~~~~~~~-~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~LAF~ 353 (389)
T PRK09560 279 AGISLSS-LTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCGIGFTMSLFIGSLAFG 353 (389)
T ss_pred cCCcHHh-ccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4322221 1112344666777889999888777653 357888888888555545788888888883
No 45
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=98.42 E-value=1e-07 Score=105.02 Aligned_cols=322 Identities=15% Similarity=0.236 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHcccC--CChhHHHHHHHHhhCccccCch--hh-------hhhccCCCCchHHHHHHHHHHHHHHHHHHh
Q 004461 41 ILLTRGLAFILRPLR--QPRVIAEITGGILLGPSALGRS--ER-------FLQAVFPPKSQTVLDTLANLGLIFFMFLVG 109 (752)
Q Consensus 41 l~~~~~~~~ll~rl~--~P~iv~~IlaGiilGP~~lg~~--~~-------~~~~lfp~~~~~~l~~l~~lgl~~llF~~G 109 (752)
.-++.+...+..+++ .|.-...|+.|+++|-...+.- .+ ++-.+.|+ ++|-+|
T Consensus 51 asLaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~~~~L~s~vFFlyLLPP----------------IvlDAG 114 (670)
T KOG1966|consen 51 ASLAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIAPFFLESDVFFLYLLPP----------------IVLDAG 114 (670)
T ss_pred HHHHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhccccccccccchhhhhcCH----------------HHhccc
Confidence 333444444444553 6888888888888885433221 10 11111222 678999
Q ss_pred hccChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhh--hhccCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCC
Q 004461 110 LELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRE--TISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTA 187 (752)
Q Consensus 110 le~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s 187 (752)
.-|.-+.+..+...++..|+.|.+.-.+...+..|.+.. .+...... ...++.|...|..++..+..+.+|.. .|.
T Consensus 115 YfMp~r~Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~~gl-ld~LlFgSLIsAVDPVAVLaVFEEih-VNe 192 (670)
T KOG1966|consen 115 YFMPNRAFFENLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMSIGL-LDILLFGSLISAVDPVAVLAVFEEIH-VNE 192 (670)
T ss_pred ccCccHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchH-HHHHHHHHHHHhcCchhhhhhhhhhc-ccc
Confidence 999999999999999999999999875543333333322 22212222 66788999999999999999999998 677
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCh------hHHHH--------HHHHHHHHHHHHHHHH---------H
Q 004461 188 DVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSL------VPVWV--------FLSGCVFVICLTLFVP---------P 244 (752)
Q Consensus 188 ~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~~~~~------~~~~~--------~~~~v~~~~~~~~v~~---------~ 244 (752)
-+=-++.+++++||.+.++++-+..++..-++... ..... ++..++|+.+..++.| |
T Consensus 193 ~LfI~VFGESLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~vrvieP 272 (670)
T KOG1966|consen 193 VLFIIVFGESLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKHVRVLEP 272 (670)
T ss_pred EEEeeeehhhhhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcceeeecc
Confidence 77888899999999999999987776654321110 00101 1111112222222211 1
Q ss_pred H----HHHHHHhcCC-------------Cc---------hHHHHHHHHHH---HHHHhhHHHHHHHhhccccchhhchhh
Q 004461 245 T----FKWMARQCHE-------------GP---------FANALVEKVED---LVSGIFLPLYFVSSGLKTNIATIQGLQ 295 (752)
Q Consensus 245 ~----~~~~~~~~~e-------------g~---------~~~~l~~kl~~---~~~~~~~piFFv~~Gl~~d~~~l~~~~ 295 (752)
+ +.|+.-.+.| |. ..........+ ..+..--++-|++.|..+--. ...+
T Consensus 273 vfif~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~--~h~w 350 (670)
T KOG1966|consen 273 VFIFLLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS--NHHW 350 (670)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC--ccee
Confidence 1 1111111222 10 01111111222 224455677788888876544 2224
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHhhhhHHHHHHHHHhhh-----ccCCCCHHHHHHH
Q 004461 296 SWGLLALVILTACLGKIVGTFVVSLSF------KVPLREALALGILMNTKGLVELIVLNIGK-----DRKVLNDQVFAIM 364 (752)
Q Consensus 296 ~~~~~~~~~~~~~~~K~~~~~l~~~~~------~~~~~~~~~lgl~l~~rG~v~l~l~~~~~-----~~~~i~~~~~~~l 364 (752)
+|.++.+-++.+++.|.+++...+++. +++..|.+.++. =+-||.++..+..... ..++.-..++.++
T Consensus 351 d~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsy-GGLRGAiaF~LV~lid~~~vp~K~~Fvttti~VI 429 (670)
T KOG1966|consen 351 DFAFICLTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSY-GGLRGAIAFGLVVLIDGAKVPAKNMFVTTTIAVI 429 (670)
T ss_pred ehhhhhhHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeec-CCcchhhheeEEEEeccccCCcccceEeeeeEEE
Confidence 566677777788888999988877765 357788888887 4889988877664333 2334444455556
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 004461 365 ILMAVVTTFMTTPLVMAVY 383 (752)
Q Consensus 365 v~~~lv~t~i~~pl~~~l~ 383 (752)
.+++.+..+..-|+++++.
T Consensus 430 fFTVflQGiTIkplvk~L~ 448 (670)
T KOG1966|consen 430 FFTVFLQGITIKPLVKFLK 448 (670)
T ss_pred eeeeeecccchHHHHHHHc
Confidence 5667777777889999984
No 46
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.40 E-value=5.3e-05 Score=80.91 Aligned_cols=259 Identities=16% Similarity=0.227 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhhHHh---cCchh---hHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHH
Q 004461 92 VLDTLANLGLIFFMFLVGLELDPKSLRQ---TGKKA---LGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV 165 (752)
Q Consensus 92 ~l~~l~~lgl~~llF~~Gle~d~~~l~~---~~~~~---~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~ 165 (752)
..+.+.+.=+.+|.|.+|+|+..+.+.. +.||+ ..-++.|+++|.++=..+.. +.....+| |+
T Consensus 56 l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~~n~--~~~~~~GW---------~I 124 (383)
T PRK14854 56 LMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLSINH--DIKVINGW---------AI 124 (383)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHhhcc--CCcccCcc---------cc
Confidence 3455566667779999999999887642 33333 34577888888764332221 11111233 22
Q ss_pred HHh-hccHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHH---H---
Q 004461 166 ALS-ITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVIC---L--- 238 (752)
Q Consensus 166 ~ls-~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~v~~~~~---~--- 238 (752)
-++ -++|++-+-.+-..+ .+..+.-..++-+++||+.++++.+++.+ ++ ....+.....+++.++ .
T Consensus 125 P~ATDIAFAlgvLallG~r-vP~~lrvFLlaLAIvDDlgAI~VIAlFYt---~~---i~~~~L~~A~~~~~~l~~~nr~~ 197 (383)
T PRK14854 125 PSATDIAFTLGILALLGTR-VPAKLKLLVITIAIFDDIAAIAIIAIFYT---KS---LSLLSLSLGTLFILAMIICNRIF 197 (383)
T ss_pred ccHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhhhHhheeeecC---CC---ccHHHHHHHHHHHHHHHHHHHhc
Confidence 222 133333332222223 56777888888899999999988876542 11 2222222222211111 1
Q ss_pred ------HHHHHHHHHHHHHhcCC-------------Cc--------hHHHHHHHHHHHHHHhhHHHH-HHHhhccccchh
Q 004461 239 ------TLFVPPTFKWMARQCHE-------------GP--------FANALVEKVEDLVSGIFLPLY-FVSSGLKTNIAT 290 (752)
Q Consensus 239 ------~~v~~~~~~~~~~~~~e-------------g~--------~~~~l~~kl~~~~~~~~~piF-Fv~~Gl~~d~~~ 290 (752)
.|++--+..|..-.... -| -.+++++++++.+..+.+|+| |+-.|..++-..
T Consensus 198 ~v~~~~~Y~~~G~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlFA~aNAGV~l~~~~ 277 (383)
T PRK14854 198 KINRSSVYVVLGFFAWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFILPVFAFANAGISFSGIS 277 (383)
T ss_pred CCceehHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhhHHHHHhhcCCeeeccCc
Confidence 01111123343322211 01 146788888999999999999 888888884222
Q ss_pred hchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhHHHHHHHHHhhhcc-CCCCHH
Q 004461 291 IQGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGLVELIVLNIGKDR-KVLNDQ 359 (752)
Q Consensus 291 l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl~l~~rG~v~l~l~~~~~~~-~~i~~~ 359 (752)
+.. ..-.....+++..++||.+|.+..++.. +++|++-..+|++-+.-=++++-+++.+.+. ...+..
T Consensus 278 ~~~-~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~LAF~~~~~~~~a 356 (383)
T PRK14854 278 FSI-LFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGFTMSLFIGVLAFNDTHLLNAI 356 (383)
T ss_pred HHh-hcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhHH
Confidence 221 1112344566777889999888777653 2578888888885555457888888888853 333433
Q ss_pred HHHHHHHHHHH
Q 004461 360 VFAIMILMAVV 370 (752)
Q Consensus 360 ~~~~lv~~~lv 370 (752)
-..++ +.+++
T Consensus 357 KigIL-~gS~~ 366 (383)
T PRK14854 357 KIGVV-VGSVL 366 (383)
T ss_pred HHHHH-HHHHH
Confidence 34444 44444
No 47
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=98.37 E-value=6.3e-05 Score=80.63 Aligned_cols=240 Identities=20% Similarity=0.292 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhhHHh---cCchh---hHHHHHHHHHHHHHHHHHHHHhhhh---hccCCchhHHHHH
Q 004461 92 VLDTLANLGLIFFMFLVGLELDPKSLRQ---TGKKA---LGIAIAGISLPFALGIGSSFLLRET---ISKGVDSTSFLVF 162 (752)
Q Consensus 92 ~l~~l~~lgl~~llF~~Gle~d~~~l~~---~~~~~---~~i~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~l~ 162 (752)
..+.+.+.=+.+|.|.+|+|+..+.+.. +.||+ ..-++.|+++|.++=. .+... ...+|
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy~----~~n~~~~~~~~GW-------- 126 (388)
T PRK09561 59 LLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIYL----LFNYADPVTREGW-------- 126 (388)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHHh----heecCCCcccCcc--------
Confidence 3455556666778999999999987753 33333 3457778888876422 22211 11233
Q ss_pred HHHHHhhccHHHHHHHHHHcc-ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHH---
Q 004461 163 MGVALSITAFPVLARILAELK-LLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICL--- 238 (752)
Q Consensus 163 l~~~ls~Ts~~vv~~iL~el~-ll~s~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~--- 238 (752)
|+-++ |+.+-...++.=+| ..+..+....++-+++||+.++++.+++.+ ++ ....+..++.+++.++.
T Consensus 127 -aIP~A-TDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~---i~~~~L~~a~~~~~~l~~ln 198 (388)
T PRK09561 127 -AIPAA-TDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT---SD---LSMVSLGVAAVAIAVLAVLN 198 (388)
T ss_pred -ccccH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---CC---ccHHHHHHHHHHHHHHHHHH
Confidence 22221 33333333333332 256677889999999999999988876542 11 22333333322221111
Q ss_pred --------HHHHHHHHHHHHHhcCC--------------C-------chHHHHHHHHHHHHHHhhHHHH-HHHhhccccc
Q 004461 239 --------TLFVPPTFKWMARQCHE--------------G-------PFANALVEKVEDLVSGIFLPLY-FVSSGLKTNI 288 (752)
Q Consensus 239 --------~~v~~~~~~~~~~~~~e--------------g-------~~~~~l~~kl~~~~~~~~~piF-Fv~~Gl~~d~ 288 (752)
.|+.--+..|..-..+. + .-.+++++++++.+..+.+|+| |+-.|..++-
T Consensus 199 ~~~v~~~~~Y~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlFAfaNAGV~l~~ 278 (388)
T PRK09561 199 LCGVRRTSVYILVGVVLWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLILPLFAFANAGVSLQG 278 (388)
T ss_pred HcCCccchHHHHHHHHHHHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhheeHHHHHhhcCCeeecc
Confidence 11111223343322211 1 1146788889999888899999 7788888832
Q ss_pred hhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhHHHHHHHHHhhhc
Q 004461 289 ATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGLVELIVLNIGKD 352 (752)
Q Consensus 289 ~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl~l~~rG~v~l~l~~~~~~ 352 (752)
..+.. ..-.....+++..++||.+|.+..++.. +++|++-..+|++-+.-=++++-+++.+.+
T Consensus 279 ~~~~~-~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~LAF~ 351 (388)
T PRK09561 279 VTLDG-LTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIGFTMSIFIASLAFG 351 (388)
T ss_pred CcHHh-hcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 22211 1112344566777889999888777653 357888888888545444788888888884
No 48
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.36 E-value=2.8e-06 Score=77.65 Aligned_cols=127 Identities=17% Similarity=0.192 Sum_probs=79.8
Q ss_pred EEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhcC-CCCCeEEEEE
Q 004461 582 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTS-RNGSVRYEER 660 (752)
Q Consensus 582 ~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~-~~~~v~~~e~ 660 (752)
+|++++++++..+.++..|.++|+..++++|++++.++...... ...+...+..++.++++..... .+..+.+. .
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~ 76 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAA---ELAELLEEEARALLEALREALAEAGVKVETV-V 76 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcch---hHHHHHHHHHHHHHHHHHHHHhcCCCceEEE-E
Confidence 58999999999999999999999999999999999865432100 0001122233466666665431 12223222 2
Q ss_pred EecCh-HHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccccchhhhccCCCCc-eeEEEE
Q 004461 661 LVRNT-AETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLII 724 (752)
Q Consensus 661 ~v~~g-~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~-~svLvv 724 (752)
..++. .+....+++ .++|++++|+++ ...+.++ ..|.+.+.++.. + .+||+|
T Consensus 77 ~~~~~~~~i~~~~~~-~~~dlvvig~~~----~~~~~~~----~~~~~~~~ll~~---~~~pvliv 130 (130)
T cd00293 77 LEGDPAEAILEAAEE-LGADLIVMGSRG----RSGLRRL----LLGSVAERVLRH---APCPVLVV 130 (130)
T ss_pred ecCCCHHHHHHHHHH-cCCCEEEEcCCC----CCcccee----eeccHHHHHHhC---CCCCEEeC
Confidence 22322 223333333 239999999998 4444333 579999988874 3 688764
No 49
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=98.33 E-value=0.00015 Score=75.71 Aligned_cols=254 Identities=15% Similarity=0.123 Sum_probs=152.4
Q ss_pred HHHHHHHHhhccChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHhhccHHHHHHHHH
Q 004461 101 LIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILA 180 (752)
Q Consensus 101 l~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~ 180 (752)
+..++|-.|-++|++...+..||...+-+.-+++..+++.+++.+++.. +. ...+.+.+-.+++.|.-..=..+..
T Consensus 51 l~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~---g~-~Gls~laiiaa~~~~Ng~ly~al~~ 126 (312)
T PRK12460 51 LGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAE---GI-FGLSGLAIVAAMSNSNGGLYAALMG 126 (312)
T ss_pred HHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCcc---cc-cchHHHHHHHHHhcCcHHHHHHHHH
Confidence 4458899999999999888888888888888888888888777777642 11 1245666777777777777788888
Q ss_pred HccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHH
Q 004461 181 ELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGPFAN 260 (752)
Q Consensus 181 el~ll~s~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~eg~~~~ 260 (752)
|.| -++|.|-. +...++|.--+.++++....... .++ ..+++ .++-++++.+.+-+...+.
T Consensus 127 ~yG-~~~d~gA~--~~~sl~~GPf~tm~aLga~gLA~--ip~---~~lv~-lilpILiGmilGNld~~~~---------- 187 (312)
T PRK12460 127 EFG-DERDVGAI--SILSLNDGPFFTMLALGAAGLAN--IPI---MALVA-ALLPLVLGMILGNLDPDMR---------- 187 (312)
T ss_pred HcC-CHhhhhHH--hhhhhccCcHHHHHHHHHHHHhc--CCh---HHHHH-HHHHHHHHHHHhccchhhH----------
Confidence 888 45566644 45557887666666554432221 111 12233 3333344444433222111
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH--HHhhh
Q 004461 261 ALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALG--ILMNT 338 (752)
Q Consensus 261 ~l~~kl~~~~~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg--l~l~~ 338 (752)
+.+++- ..+.+|+|-+..|.++|+.++.+. .+. .+++.+..++.-++.++...|++|.+.+-++.+| ..-+.
T Consensus 188 ---~~l~~G-i~f~I~f~~f~LG~~lnl~~I~~~-G~~-GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAI 261 (312)
T PRK12460 188 ---KFLTKG-GPLLIPFFAFALGAGINLSMLLQA-GLA-GILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAV 261 (312)
T ss_pred ---HHHhcc-ceEeHHHHHHHhcCCeeHHHHHHh-ChH-HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHH
Confidence 122221 345889999999999999988752 232 2333333444555566666688898888888877 43333
Q ss_pred hHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHhchh
Q 004461 339 KGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVM-AVYKPA 386 (752)
Q Consensus 339 rG~v~l~l~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~pl~~-~l~~~~ 386 (752)
-|-..++.+. ...+.. .+.-+..+.++++.|.+..|++. |.+|+.
T Consensus 262 cgpAAVaAad--P~~~~~-~~~Ataqvaa~vivTail~P~~t~~~~k~~ 307 (312)
T PRK12460 262 ATPLAIAAAD--PSLAPV-AAAATAQVAASVIVTAILTPLLTSWVAKKE 307 (312)
T ss_pred HHHHHHHHhc--hhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333332222 222222 24445555666666777766665 555543
No 50
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.32 E-value=6.1e-05 Score=81.75 Aligned_cols=258 Identities=20% Similarity=0.233 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhhHHh---cCchh---hHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHH
Q 004461 92 VLDTLANLGLIFFMFLVGLELDPKSLRQ---TGKKA---LGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV 165 (752)
Q Consensus 92 ~l~~l~~lgl~~llF~~Gle~d~~~l~~---~~~~~---~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~ 165 (752)
..+.+.+.-+.+|.|.+|+|+..+.+.. +.|++ ..-++.|+++|.++=. .+...- + ..--+|+
T Consensus 63 l~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy~----~~n~~~--~-----~~~GWgI 131 (423)
T PRK14855 63 LEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALYT----ALNAGG--P-----GASGWGV 131 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHHh----eeecCC--C-----ccCcccc
Confidence 3455566667779999999999987753 33333 3447778888865422 222110 0 0112333
Q ss_pred HHhhccHHHHHHHHHHccc-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHH------
Q 004461 166 ALSITAFPVLARILAELKL-LTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICL------ 238 (752)
Q Consensus 166 ~ls~Ts~~vv~~iL~el~l-l~s~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~------ 238 (752)
-++ |+.+-...+|+=+|- .+..+....++-+++||+.++++.+++.+ ++- ...++.++.+++.++.
T Consensus 132 PmA-TDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~i---~~~~L~~a~~~~~~l~~ln~~~ 204 (423)
T PRK14855 132 PMA-TDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT---SGL---NLLALLLAALTWALALLAGRLG 204 (423)
T ss_pred ccH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC---CCC---CHHHHHHHHHHHHHHHHHHHcC
Confidence 222 333333344333432 45667888999999999999887775542 111 1222222211111110
Q ss_pred -----HHHHHHHHHHHHHhcCC---------------------C---------------------------------chH
Q 004461 239 -----TLFVPPTFKWMARQCHE---------------------G---------------------------------PFA 259 (752)
Q Consensus 239 -----~~v~~~~~~~~~~~~~e---------------------g---------------------------------~~~ 259 (752)
.|++--+..|..-..+. + .-.
T Consensus 205 v~~~~~Y~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl 284 (423)
T PRK14855 205 VTSLKIYAVLGALLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGARLRDLEDLLERAQSPL 284 (423)
T ss_pred CccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhHHHHhhhhhccccCCHH
Confidence 01111111121111100 0 013
Q ss_pred HHHHHHHHHHHHHhhHHHH-HHHhhccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHH
Q 004461 260 NALVEKVEDLVSGIFLPLY-FVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLRE 328 (752)
Q Consensus 260 ~~l~~kl~~~~~~~~~piF-Fv~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~----------~~~~~~ 328 (752)
+++++++.+.+..+.+|+| |+-.|..++-.. .. .....+++..++||.+|.+..++.. +++|++
T Consensus 285 ~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~~----pv~lGI~~GLvvGK~lGI~~~s~lavkl~~a~lP~g~~w~~ 359 (423)
T PRK14855 285 HRLEHALHPWSTFLILPVFALFNAGVSVSGGG-LG----TVSLGVFLGLLLGKPLGVVGGAWLAVRLGLASLPRRVNWLH 359 (423)
T ss_pred HHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-CC----cHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHH
Confidence 4577778888888899999 788888885333 21 2334566677888988888777653 357888
Q ss_pred HHHHHHHhhhhHHHHHHHHHhhhccC-CCCHHHHHHHHHHHHHHHH
Q 004461 329 ALALGILMNTKGLVELIVLNIGKDRK-VLNDQVFAIMILMAVVTTF 373 (752)
Q Consensus 329 ~~~lgl~l~~rG~v~l~l~~~~~~~~-~i~~~~~~~lv~~~lv~t~ 373 (752)
-..+|++-+.-=++++-+++.+.+.. ..++.-..++ +++++...
T Consensus 360 l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~aKigIL-~~S~~aai 404 (423)
T PRK14855 360 MLGAGLLAGIGFTMSLFISNLAFADAALLTQAKLGVL-AASVLAAL 404 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHH-HHHHHHHH
Confidence 88888855554478888888888433 3333333433 44444333
No 51
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=98.06 E-value=2.4e-05 Score=84.69 Aligned_cols=126 Identities=14% Similarity=0.114 Sum_probs=80.0
Q ss_pred cceEEEEEccCCcchHHHHHHHHHHhhCC--CeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhcCC-----
Q 004461 579 VSYTITVLFFGGRDDREALACGARMAEHP--GISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSR----- 651 (752)
Q Consensus 579 ~~~~I~v~~~gg~ddreAL~~a~~ma~~~--~~~ltvl~v~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~----- 651 (752)
.++||++|+||++.++.|+++|..+|+.. ++++|++++++...... ..+...+..++.+++.+.....
T Consensus 4 ~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~-----~~~~~~~~~eelle~~~~~~~~~l~~~ 78 (357)
T PRK12652 4 AANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDP-----EGQDELAAAEELLERVEVWATEDLGDD 78 (357)
T ss_pred ccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccccc-----chhHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 46899999999999999999999999985 69999999997533220 0011112223344444332211
Q ss_pred CCCeEEEEEEe---------cChHHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccccchhhhccCCCC
Q 004461 652 NGSVRYEERLV---------RNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFS 717 (752)
Q Consensus 652 ~~~v~~~e~~v---------~~g~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~~~ 717 (752)
...+.+...++ ++..+++....+..++||||||..- .-| ..-|-|-++.-.|++.+.+
T Consensus 79 ~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~----~~~----~~~~~~~~~~~~~~~~~~~ 145 (357)
T PRK12652 79 ASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEY----NPG----GTAPMLQPLERELARAGIT 145 (357)
T ss_pred cCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCC----CCC----CCCcccchHHHHHHhcCCc
Confidence 12343433332 4667766655554459999999986 111 1245677788888887764
No 52
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=98.02 E-value=0.001 Score=69.10 Aligned_cols=258 Identities=16% Similarity=0.144 Sum_probs=143.9
Q ss_pred HHHHHHHHhhccChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhhhh-ccCCchhHHHHHHHHHHhhccHHHHHHHH
Q 004461 101 LIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETI-SKGVDSTSFLVFMGVALSITAFPVLARIL 179 (752)
Q Consensus 101 l~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL 179 (752)
+..++|-.|-++|++...+..||...+-+.-+++..+++.++..+++..- ..+.....+.+.+-++++.+....=..+.
T Consensus 51 ig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~ 130 (314)
T PF03812_consen 51 IGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALM 130 (314)
T ss_pred HHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHH
Confidence 45588999999999999999999988888888888888888887776431 00111225567777788888888888888
Q ss_pred HHccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 004461 180 AELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGPFA 259 (752)
Q Consensus 180 ~el~ll~s~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~eg~~~ 259 (752)
.|.| -++|.| +.+...++|.-.+.++.+-. .....-++ ..+++.++= ++.++++ |-+.
T Consensus 131 ~~yG-d~~D~g--A~~i~sl~~GPf~tMl~LG~--sG~a~ip~---~~lv~~llP-~iiG~iL-------------GNLD 188 (314)
T PF03812_consen 131 GQYG-DEEDVG--AFSILSLNDGPFFTMLALGA--SGLANIPW---MSLVAALLP-IIIGMIL-------------GNLD 188 (314)
T ss_pred HHhC-CHHHhH--HHHHHHhhhhHHHHHHHHhh--ccccCCCH---HHHHHHHHH-HHHHHHH-------------hcCC
Confidence 8888 355555 44555567765555554322 12112222 223333222 2223332 2222
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHhhh
Q 004461 260 NALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLS-FKVPLREALALGILMNT 338 (752)
Q Consensus 260 ~~l~~kl~~~~~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~-~~~~~~~~~~lgl~l~~ 338 (752)
+.+.+-+.+- ...++|+|-...|..+|+..+...-.-+++ +-+..++.-....++.-++ .|-+-.-+...+-.-+.
T Consensus 189 ~~~r~fl~~~-~~~lIPF~~f~lGa~inl~~i~~aGl~GIl--Lgv~~~~vtg~~~~~~dr~i~~~~g~aG~A~sstAGn 265 (314)
T PF03812_consen 189 PDFRKFLAPG-VPILIPFFGFALGAGINLSNIIKAGLSGIL--LGVIVVVVTGIPLYLADRLILKGNGVAGAAISSTAGN 265 (314)
T ss_pred HHHHHHHhcC-CCeeeehhhhhhcCCCCHHHHHHhCcchHH--HHHHHHHHHhHHHHHHHHHHcCCCCceeehHHhhhhh
Confidence 2333333332 578899999999999999988753222222 2222222223334555555 34333333333322222
Q ss_pred hHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHhc
Q 004461 339 KGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVM-AVYK 384 (752)
Q Consensus 339 rG~v~l~l~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~pl~~-~l~~ 384 (752)
--.+..+++..-.+..... +.-+.-+.++++.|.+.+|++. |.+|
T Consensus 266 avatPaaiA~~dP~~~~~~-~~ATaQvAaavIvTail~P~lt~~~~k 311 (314)
T PF03812_consen 266 AVATPAAIAAADPSFAPYA-ASATAQVAAAVIVTAILTPILTSWWAK 311 (314)
T ss_pred hhhhhHHHHHhChhhHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233344554444443333 3333444555555666666554 5544
No 53
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=97.98 E-value=1.7e-05 Score=84.87 Aligned_cols=248 Identities=20% Similarity=0.316 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhhHH---hcCchh---hHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHH
Q 004461 91 TVLDTLANLGLIFFMFLVGLELDPKSLR---QTGKKA---LGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMG 164 (752)
Q Consensus 91 ~~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~ 164 (752)
...+.+.+.=+.+|.|.+|+|+..+.+. ++.||+ ..-++.|+++|.++ +..+... .+ ...--+|
T Consensus 54 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalI----yl~~n~~--~~----~~~~GW~ 123 (378)
T PF06965_consen 54 SLHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALI----YLAFNAG--GP----EAAHGWA 123 (378)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH----HGGG--S--ST----THHHHTS
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHH----HheeecC--CC----CcCceEE
Confidence 3455566666778999999999988764 233433 34467777777653 2222211 00 0122233
Q ss_pred HHHhhccHHHHHHHHHHccc-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHH-----
Q 004461 165 VALSITAFPVLARILAELKL-LTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICL----- 238 (752)
Q Consensus 165 ~~ls~Ts~~vv~~iL~el~l-l~s~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~----- 238 (752)
+-+ .|+.+-...++.=+|- .+..+....++-+++||+.++++.+++.+ ++ ....+.....+++.+..
T Consensus 124 IP~-ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt---~~---i~~~~L~~a~~~~~~l~~l~r~ 196 (378)
T PF06965_consen 124 IPM-ATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT---DG---ISLLWLLLAAAALLLLFVLNRL 196 (378)
T ss_dssp SSS----HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS-----------HHHHHHHHHHHHHHHHHHHT
T ss_pred ecc-cccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC---CC---CCHHHHHHHHHHHHHHHHHHHC
Confidence 322 2444444455443432 45667889999999999999998886653 11 22233322222211111
Q ss_pred ------HHHHHHHHHHHHHhcCC-------------------------CchHHHHHHHHHHHHHHhhHHHH-HHHhhccc
Q 004461 239 ------TLFVPPTFKWMARQCHE-------------------------GPFANALVEKVEDLVSGIFLPLY-FVSSGLKT 286 (752)
Q Consensus 239 ------~~v~~~~~~~~~~~~~e-------------------------g~~~~~l~~kl~~~~~~~~~piF-Fv~~Gl~~ 286 (752)
.|++--+..|..-.... .+-.+++++++++.+..+.+|+| |+-.|..+
T Consensus 197 ~v~~~~~Y~~~G~~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~~IlPlFAlaNAGV~l 276 (378)
T PF06965_consen 197 GVRSLWPYLLLGILLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVAFVILPLFALANAGVSL 276 (378)
T ss_dssp T---THHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHHHTHHHHHHHHHS----
T ss_pred CCceehHHHHHHHHHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhhhhhHHhHhheeCceEE
Confidence 01111122233221111 11246788899999888999999 88899988
Q ss_pred cchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCC
Q 004461 287 NIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGLVELIVLNIGKDRKVL 356 (752)
Q Consensus 287 d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl~l~~rG~v~l~l~~~~~~~~~i 356 (752)
+-..+... .-.....+++..++||.+|.+..++.. +++|++-..+|++-+.-=++++-+++.+.+....
T Consensus 277 ~~~~~~~~-~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~ 355 (378)
T PF06965_consen 277 SGSSLGDL-TSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAGIGFTMSLFIAGLAFDDPAL 355 (378)
T ss_dssp SSS---TH-HHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT--HHHHHHHHHHHSTT-SS
T ss_pred ecCchHhh-hChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCChhh
Confidence 86654321 222334566677889999988776653 2466776777775444447888888988876433
No 54
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=97.95 E-value=9.8e-05 Score=69.84 Aligned_cols=138 Identities=22% Similarity=0.217 Sum_probs=90.3
Q ss_pred cceEEEEEcc-CCcchHHHHHHHHHHhhCCCeEEEEEEEeecccccCCcccc-CC-------cCccccHHHHHHHHHhhc
Q 004461 579 VSYTITVLFF-GGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSV-DM-------AGNASMDEEVLSEFKLKT 649 (752)
Q Consensus 579 ~~~~I~v~~~-gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~~~~-~~-------~~~~~~d~~~l~e~~~~~ 649 (752)
..++|+++++ |.+..+.|++.+..++...+..++++.+.+........... .. ...++..++.+++.+...
T Consensus 4 ~~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
T COG0589 4 MYKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALA 83 (154)
T ss_pred ccceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4579999999 99999999999999999999999988888653321000000 00 111233345555555443
Q ss_pred CCCCCe-EEEEEEecCh-HHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccccchhhhccCCCCceeEEEEEe
Q 004461 650 SRNGSV-RYEERLVRNT-AETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQQ 726 (752)
Q Consensus 650 ~~~~~v-~~~e~~v~~g-~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvvqq 726 (752)
...+.. .-.+...+++ .+.+....+..++|||+||+++ .+++.+ =.||.+.+.++..-- +||||+..
T Consensus 84 ~~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g----~~~l~~----~llGsvs~~v~~~~~--~pVlvv~~ 152 (154)
T COG0589 84 EAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRG----RSGLSR----LLLGSVAEKVLRHAP--CPVLVVRS 152 (154)
T ss_pred HHcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCC----Cccccc----eeeehhHHHHHhcCC--CCEEEEcc
Confidence 222222 2334444555 4555544444459999999998 566665 369999999999432 89999974
No 55
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=97.94 E-value=0.0015 Score=67.46 Aligned_cols=234 Identities=19% Similarity=0.268 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHhhccChhhHHh---cCchh---hHHHHHHHHHHHHHHHHHHHHhhhh---hccCCchhHHHHHHHHH
Q 004461 96 LANLGLIFFMFLVGLELDPKSLRQ---TGKKA---LGIAIAGISLPFALGIGSSFLLRET---ISKGVDSTSFLVFMGVA 166 (752)
Q Consensus 96 l~~lgl~~llF~~Gle~d~~~l~~---~~~~~---~~i~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~l~l~~~ 166 (752)
+-+-=..++.+.+|+|+..+.+.. ++|++ ..-++.|++.|.++ +..+... ...+|..
T Consensus 66 INDgLMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAli----y~~~n~~~p~~~~GWaI---------- 131 (390)
T COG3004 66 INDGLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALI----YLALNAGDPATLEGWAI---------- 131 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhH----hheeecCChhhhcCcCc----------
Confidence 333334557788999999998763 33333 23466677777543 2222211 1123322
Q ss_pred HhhccHHHHHHHHHHcc-ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHH---HHH-----
Q 004461 167 LSITAFPVLARILAELK-LLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVF---VIC----- 237 (752)
Q Consensus 167 ls~Ts~~vv~~iL~el~-ll~s~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~v~~---~~~----- 237 (752)
-+.|+.+-...+++=++ ..++.+.-..++-+++||+-++++.++... .+ .+..+..++.++. ...
T Consensus 132 P~ATDiAFAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt---~~---Ls~~al~~a~~~i~vL~~lN~~~v 205 (390)
T COG3004 132 PMATDIAFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT---TD---LSMAALGIAALAIAVLAVLNRLGV 205 (390)
T ss_pred ccHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc---CC---ccHHHHHHHHHHHHHHHHHHHhCc
Confidence 12244444444444343 367888889999999999999988876542 22 1222222221111 111
Q ss_pred ---HHHHHHHHHHHHHHhcCC---------------------CchHHHHHHHHHHHHHHhhHHHH-HHHhhcccc---ch
Q 004461 238 ---LTLFVPPTFKWMARQCHE---------------------GPFANALVEKVEDLVSGIFLPLY-FVSSGLKTN---IA 289 (752)
Q Consensus 238 ---~~~v~~~~~~~~~~~~~e---------------------g~~~~~l~~kl~~~~~~~~~piF-Fv~~Gl~~d---~~ 289 (752)
..|.+--...|+.-..+. .+.-+++++.+.+.+..+.+|+| |.-.|..++ ..
T Consensus 206 ~~l~~Y~~~gviLW~~vlkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPlFaFaNAGvsl~g~~~~ 285 (390)
T COG3004 206 RRLSPYLLVGVILWIAVLKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILPLFAFANAGVSLQGVSLS 285 (390)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHHHHHccCCccccccccc
Confidence 112222223344322211 13456788888888888999999 888888877 33
Q ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhHHHHHHHHHhhhcc
Q 004461 290 TIQGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGLVELIVLNIGKDR 353 (752)
Q Consensus 290 ~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl~l~~rG~v~l~l~~~~~~~ 353 (752)
.+.+ ...+.+++..+++|.+|.+..++.. +.+|++-..++++-+.-=++++-+...+.+.
T Consensus 286 ~l~s----~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMSlFI~~LAf~~ 355 (390)
T COG3004 286 GLTS----PLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFIASLAFGS 355 (390)
T ss_pred cccc----chHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 3332 2345566777889999888877653 3577777777774444446777888877765
No 56
>PRK10490 sensor protein KdpD; Provisional
Probab=97.84 E-value=6.9e-05 Score=91.81 Aligned_cols=125 Identities=13% Similarity=0.097 Sum_probs=90.8
Q ss_pred CCcceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHH
Q 004461 405 KAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVA 484 (752)
Q Consensus 405 ~~e~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 484 (752)
....|||||++++++++++++.+..+|. +.+++.+++||.....+..+ .+..+++.+.
T Consensus 248 ~~~eriLV~v~~~~~~~~lIr~~~rlA~---~~~a~~~~l~V~~~~~~~~~-------------------~~~~~~l~~~ 305 (895)
T PRK10490 248 HTRDAILLCIGHNTGSEKLVRTAARLAA---RLGSVWHAVYVETPRLHRLP-------------------EKKRRAILSA 305 (895)
T ss_pred CcCCeEEEEECCCcchHHHHHHHHHHHH---hcCCCEEEEEEecCCcCcCC-------------------HHHHHHHHHH
Confidence 3567899999999999999999999994 47788899998643211000 0122344455
Q ss_pred HHHhhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCC-CceEEE
Q 004461 485 FEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAP-CSVGIL 563 (752)
Q Consensus 485 ~~~~~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~Ap-C~V~Il 563 (752)
++ .+++-|.++... .+ +++++.|.++|++++++.||||-+++.++ .. -||+.+++++.+| ..|-|+
T Consensus 306 ~~-lA~~lGa~~~~~--~~--~dva~~i~~~A~~~~vt~IViG~s~~~~~--~~------~~s~~~~l~r~~~~idi~iv 372 (895)
T PRK10490 306 LR-LAQELGAETATL--SD--PAEEKAVLRYAREHNLGKIIIGRRASRRW--WR------RESFADRLARLGPDLDLVIV 372 (895)
T ss_pred HH-HHHHcCCEEEEE--eC--CCHHHHHHHHHHHhCCCEEEECCCCCCCC--cc------CCCHHHHHHHhCCCCCEEEE
Confidence 53 555544454332 23 69999999999999999999999887654 33 5799999999998 666655
Q ss_pred e
Q 004461 564 I 564 (752)
Q Consensus 564 v 564 (752)
-
T Consensus 373 ~ 373 (895)
T PRK10490 373 A 373 (895)
T ss_pred e
Confidence 3
No 57
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=97.75 E-value=0.026 Score=59.40 Aligned_cols=273 Identities=17% Similarity=0.217 Sum_probs=145.4
Q ss_pred ChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccChhhHHhcCchhhHHHHHHHHHHH
Q 004461 57 PRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPF 136 (752)
Q Consensus 57 P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~ 136 (752)
+-+.-.+++|+.+|-..-+..+ ..+ .-+...++.--.+|+++.|+-.=+++|.+++++..++.=.+ +.+..+-+
T Consensus 18 ~wv~l~i~~Gi~lG~~~p~~~~-~l~----~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L-~lsL~~Nw 91 (342)
T COG0798 18 LWVFLAIAIGILLGVHFPGLAQ-LLG----KLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPL-ILSLFVNW 91 (342)
T ss_pred HHHHHHHHHHHHHHhcccchhh-hcc----cceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHH-HHHHHHHH
Confidence 3356677788988844333111 000 01223355566788898999888999999998766553222 22222333
Q ss_pred HH----HHHHHHHhhhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 004461 137 AL----GIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAV 212 (752)
Q Consensus 137 ~~----~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll~v~~ 212 (752)
++ .+++++++.... .......+.+|++=| +|...+-. ++.+.+ -..++..-.+||++.+++++...
T Consensus 92 ii~P~lm~~la~~fl~~~---pey~~GlILlglApC-~aMVivw~-----~La~Gd-~~~tlv~Va~n~l~qiv~y~~~~ 161 (342)
T COG0798 92 IIGPLLMFALAWFFLPDE---PEYRAGLILLGLAPC-IAMVIVWS-----GLAKGD-RELTLVLVAFNSLLQIVLYAPLG 161 (342)
T ss_pred HHHHHHHHHHHHHHhCCC---HHHHHHHHHHHhhhh-HHHHHHHH-----hhccCc-HhhhhHHHHHHHHHHHHHHHHHH
Confidence 33 233333333211 111112222332222 22222222 333333 34455666789999999887655
Q ss_pred HHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHH-HhhHHHHHHHhhccccchh
Q 004461 213 ALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHE-GPFANALVEKVEDLVS-GIFLPLYFVSSGLKTNIAT 290 (752)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~e-g~~~~~l~~kl~~~~~-~~~~piFFv~~Gl~~d~~~ 290 (752)
.+.-+..+..-..+.++..+.+.+.+-++.+-+.+++..+... .-+.++...+++++.- +++.. -|+..+.+-|.-.
T Consensus 162 ~~~l~v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~kg~~~~~~~f~p~ispi~ligLl~T-ivliF~~qg~~Iv 240 (342)
T COG0798 162 KFFLGVISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKKKGREWYESRFLPKISPIALIGLLLT-IVLIFAFQGEQIV 240 (342)
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcChHHHHHHHHH-HHHHHHHhHHHHH
Confidence 4332222212345666766666666667777777766665432 1245666666665532 23322 2333344444211
Q ss_pred hchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHH
Q 004461 291 IQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLN 348 (752)
Q Consensus 291 l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~l~~ 348 (752)
........+.+-.+.-+...+..++..++..|.|.+++..+++....+ .++++++.
T Consensus 241 -~~p~~i~liAIpl~iy~~~~~~i~~~i~k~lgl~y~~~~~~~ft~aSN-nfeLAiAv 296 (342)
T COG0798 241 -EQPLDILLIAIPLLIYFLLMFFISYFIAKALGLPYEDAAALVFTGASN-NFELAIAV 296 (342)
T ss_pred -hChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhceeeeeccc-cHHHHHHH
Confidence 111233334445555566778888999999999999999888865443 35555543
No 58
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=97.66 E-value=0.092 Score=57.71 Aligned_cols=274 Identities=19% Similarity=0.191 Sum_probs=146.2
Q ss_pred CCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccChhhHHhcCchhhHHHHHHHHH
Q 004461 55 RQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISL 134 (752)
Q Consensus 55 ~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~ 134 (752)
.+|.++-.++.|+++.. +|.++ ++...+..+.+.+..+=+-+++.=++.|++.++|.++|.+..=+.+ .+
T Consensus 24 ~l~~~vl~~~~~~~lsn--lgli~-------~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~-~~ 93 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSN--LGLID-------SPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIG-AV 93 (378)
T ss_pred hcCHHHHHHHHHHHHHH--CCCcC-------CCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHH-HH
Confidence 46888888888898885 34331 1223355666766666666666667899999999998876443333 34
Q ss_pred HHHHHHHHHHHhhhhh-ccCCchhHHHHHHHHHHhhc------cHHHHHHHHHHccccCCchHHHHHHHHHH-HHHHHHH
Q 004461 135 PFALGIGSSFLLRETI-SKGVDSTSFLVFMGVALSIT------AFPVLARILAELKLLTADVGRMAMSAAAV-NDVAAWI 206 (752)
Q Consensus 135 ~~~~~~~~~~~l~~~~-~~~~~~~~~~l~l~~~ls~T------s~~vv~~iL~el~ll~s~~g~l~l~~a~i-~D~~~~~ 206 (752)
..++|..+++.+.... .+ +..-++.+++-| .+..+... ++ -+ .. .+++++. |.+..-+
T Consensus 94 g~viG~~va~~l~~~~l~~------~~wk~ag~l~gsyiGGs~N~~Av~~a---l~---~~-~~-~~~a~~aaDnv~~~~ 159 (378)
T PF05684_consen 94 GTVIGAVVAFLLFGGFLGP------EGWKIAGMLAGSYIGGSVNFVAVAEA---LG---VS-DS-LFAAALAADNVVMAL 159 (378)
T ss_pred HHHHHHHHHHHHHhhcccc------hHHHHHHHHHhcccCchhHHHHHHHH---HC---CC-HH-HHHHHHHHHHHHHHH
Confidence 4445555555554432 11 122223333222 22333333 23 22 23 3444444 4455444
Q ss_pred HHHHHHHHhcC----------CCCC-------h----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC-
Q 004461 207 LLALAVALSGS----------GQSS-------L----------VPVWVFLSGCVFVICLTLFVPPTFKWMARQC---HE- 255 (752)
Q Consensus 207 ll~v~~~~~~~----------~~~~-------~----------~~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~---~e- 255 (752)
.+.++..+... +... . .....+...+.....+..+...+..|+.... +.
T Consensus 160 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~a~~v~~~s~~la~~l~~~~~~~~~~ 239 (378)
T PF05684_consen 160 WFAFLLALPPFARKFDRWTKADTSSIEALEEEIEAEEAEWARKPISQDLAFLLAVAFAVVALSHALAAWLPPLFAGISSS 239 (378)
T ss_pred HHHHHHHHhhhhHHhhhccCCCccccchhhhhhhhhhhccccCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 45444444320 0000 0 0001111222222222223333334442111 11
Q ss_pred ----------------CchHHHHHHHHHHHHHHhhHHHHHHHhhccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004461 256 ----------------GPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVS 319 (752)
Q Consensus 256 ----------------g~~~~~l~~kl~~~~~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~ 319 (752)
+|..+.+ .--+.+ ..+++=+||+.+|++.|+..+.+ -+..+++.++.+..-.+..+..+
T Consensus 240 ~~~il~~tt~~l~~~~~~~~~~l-~g~~~l-g~~lly~ffa~IGa~a~i~~l~~---ap~~~l~~~i~l~iH~~l~l~~~ 314 (378)
T PF05684_consen 240 TWLILTVTTLGLATSFPPFRKLL-RGASEL-GTFLLYLFFAVIGASADISELLD---APSLFLFGFIILAIHLLLMLILG 314 (378)
T ss_pred HHHHHHHHHHHHHHhccchhhcC-CchHHH-HHHHHHHHHHHHccccCHHHHHH---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333 233444 46777789999999999998875 22334455666778888899999
Q ss_pred HhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCCH
Q 004461 320 LSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLND 358 (752)
Q Consensus 320 ~~~~~~~~~~~~lgl~l~~rG~v~l~l~~~~~~~~~i~~ 358 (752)
+++|.|..+-..-+. -|.-|-........++...+..+
T Consensus 315 kl~k~~l~~~~vAS~-AnIGGpaTA~a~A~a~~~~Lv~p 352 (378)
T PF05684_consen 315 KLFKIDLFELLVASN-ANIGGPATAPAVAAAKGPSLVPP 352 (378)
T ss_pred HHHCCCHHHHHHHhh-cccCCcchHHHHHHhcCCccHHH
Confidence 999999977766555 56656555555445544444443
No 59
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=97.66 E-value=0.0034 Score=64.93 Aligned_cols=259 Identities=12% Similarity=0.156 Sum_probs=143.1
Q ss_pred HHHHHHHHhhccChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhhhh-ccCCchhHHHHHHHHHHhhccHHHHHHHH
Q 004461 101 LIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETI-SKGVDSTSFLVFMGVALSITAFPVLARIL 179 (752)
Q Consensus 101 l~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL 179 (752)
+..++|-.|-++|++...+..||...+-+.-+++..+++.+++.+++..- ..+.-...+.+.+-.+++.|.-..=+.+.
T Consensus 51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~ 130 (314)
T TIGR00793 51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIM 130 (314)
T ss_pred HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHH
Confidence 34588899999999998888888887878888888888888887776421 00111124566666777777777777888
Q ss_pred HHccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Q 004461 180 AELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGPFA 259 (752)
Q Consensus 180 ~el~ll~s~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~eg~~~ 259 (752)
.|.| -++|.|-. +...++|.--+.++++-. .+.... .++.++..++=+ ++++++ |-+.
T Consensus 131 ~qyG-d~~D~gA~--~i~sl~~GPf~TMi~LG~----sGlA~i-p~~~lv~~ilPl-liG~il-------------GNLD 188 (314)
T TIGR00793 131 QQYG-TKEEAGAF--VLMSLESGPLMTMVILGT----AGIASF-EPHVFVGAVLPF-LVGFAL-------------GNLD 188 (314)
T ss_pred HHcC-CHhhhhhh--hhhhhccCcHHHHHHHhh----ccCCCC-CHHHHHHHHHHH-HHHHHH-------------hcCC
Confidence 8888 45566644 445577765555444321 111111 223334433222 222332 1222
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHhhh
Q 004461 260 NALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF-KVPLREALALGILMNT 338 (752)
Q Consensus 260 ~~l~~kl~~~~~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~-~~~~~~~~~lgl~l~~ 338 (752)
+.+.+-+.+- ...++|+|-...|..+|++.+...-..+++ +-+...+.--...++.-++. |-+..-+...|-.-+.
T Consensus 189 ~~~r~fl~~~-~~~lIpFf~FaLGaginl~~i~~aGl~GIl--LGl~v~~vtG~~~~~~dr~~~g~~g~aG~A~sstAGn 265 (314)
T TIGR00793 189 PELRDFFSKA-VQTLIPFFAFALGNTIDLGVIIQTGLLGIL--LGVSVIILTGIPLILADKFIGGGDGTAGIAASSSAGA 265 (314)
T ss_pred HHHHHHhccC-CCeeeehhhhhhcCCCCHHHHHHhCcchHH--HHHHHHHHHhHHHHHHHHHhcCCCCchhhHHHHHHHH
Confidence 2333333332 468899999999999999888542222222 11222223334455666665 3333334444332222
Q ss_pred hHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHhch
Q 004461 339 KGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVM-AVYKP 385 (752)
Q Consensus 339 rG~v~l~l~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~pl~~-~l~~~ 385 (752)
--....+++..-.+..... +.-+..+.++++.|.+..|++. |.+|+
T Consensus 266 AvatPaavA~adPs~~~~a-~~ATaqvAaavivTaiL~Pilta~~~kr 312 (314)
T TIGR00793 266 AVATPVLIAEMVPAFKPVA-PAATALVATSVIVTSLLVPIATVWWSKK 312 (314)
T ss_pred hhhhHHHHHHhChhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2233344444444433332 4445555666666777777665 55443
No 60
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=97.45 E-value=0.081 Score=55.94 Aligned_cols=263 Identities=14% Similarity=0.121 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHhh--
Q 004461 92 VLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSI-- 169 (752)
Q Consensus 92 ~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~-- 169 (752)
.++..-...+.++||..|+.+..+.+++..|+.. .-+.+.+.+|++.=++++.+...+.. +.-+..|..+..
T Consensus 35 ~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~-~vligl~~qfvlmPlla~~~~~~~~l-----~~~l~~Gl~ll~~~ 108 (319)
T COG0385 35 WLGSAIPIALALIMFGMGLTLSREDFLAGLKHPR-LVLIGLAAQFVLMPLLALLLAKLFPL-----PPELAVGLLLLGCC 108 (319)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHhHHheeeC
Confidence 3444557889999999999999999987555433 22333444444433344444433321 234455555422
Q ss_pred ---ccHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---ChhHHHHHHHHHHHHHHHHHHHH
Q 004461 170 ---TAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQS---SLVPVWVFLSGCVFVICLTLFVP 243 (752)
Q Consensus 170 ---Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~v~~ 243 (752)
|+. .+...+ .+.+ --++++.+.++.+++.++.-+...+..++.. .+..++.++..++.=++.+.++|
T Consensus 109 Pggv~S-~~~t~l-----AkGn-ValsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~r 181 (319)
T COG0385 109 PGGVAS-NAMTYL-----AKGN-VALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLR 181 (319)
T ss_pred CCchhH-HHHHHH-----hcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 333322 1222 3455667778888888887666654433322 23445555555555566677777
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHhhHHHHHHHhhccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004461 244 PTFKWMARQCHEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFK 323 (752)
Q Consensus 244 ~~~~~~~~~~~eg~~~~~l~~kl~~~~~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~ 323 (752)
+......++.. .....+.. ..+++-++-++.+..-+.... .. .+.+.+++-...-+..+|..++.+|
T Consensus 182 ~~~~~~~~~~~------~~l~~vs~--~~illIv~~~~s~~~~~~~~~----~~-~v~~~v~~~n~lg~~~gy~~ar~~g 248 (319)
T COG0385 182 PLLPKWVERLK------KALPPVSV--LSILLIVYAAFSAAVENGIWS----GL-LIFVAVILHNLLGLLLGYFGARLLG 248 (319)
T ss_pred HHHHHHHHHHh------hhcchhhH--HHHHHHHHHHHHHHHHhhhHH----HH-HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 76654433321 11112221 133333333333333322111 11 2233333334445778889999999
Q ss_pred CChHHHHHHHHHhhhhH-HHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 004461 324 VPLREALALGILMNTKG-LVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKP 385 (752)
Q Consensus 324 ~~~~~~~~lgl~l~~rG-~v~l~l~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~pl~~~l~~~ 385 (752)
++..|...+.+--+.|- .....++....+. +..--...+..++.. ++..++...|++
T Consensus 249 ~~~a~~iti~ie~g~qn~~lg~alA~~f~~~----~~~alP~aif~~~q~-~~~a~la~~~~~ 306 (319)
T COG0385 249 FDKADEITIAIEGGMQNLGLGAALAAAFFGN----PLMALPLAIFSVWQN-MSGAVLAGLYAR 306 (319)
T ss_pred CChhheeeEEEeeccccHHHHHHHHHhcCCC----chhHhHHHHHHHHHH-HHHHHHHHHHHh
Confidence 99999887776444432 2334444442222 333333334454544 444444444443
No 61
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=97.42 E-value=0.059 Score=58.25 Aligned_cols=236 Identities=17% Similarity=0.120 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHhhccChhhHHhcCchhhHHHHHHHHHHHH----HHHHHHHHhhhhhccCCchhHHHHHHHHHHhhccH-
Q 004461 98 NLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFA----LGIGSSFLLRETISKGVDSTSFLVFMGVALSITAF- 172 (752)
Q Consensus 98 ~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~- 172 (752)
.+++.++||-.|++++++++++..|+...+. .+.+..++ ++++++..+. +.+ ..+.+|..+....+
T Consensus 46 ~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~-~~~~~qfvi~Plla~~l~~l~~---~~~-----p~l~~GliLv~~~Pg 116 (328)
T TIGR00832 46 AIGLILMMYPPLAKVDYSALGDVFKDPKGLI-LSLFINWIIGPFLMFLLAWLFL---RDL-----FEYIAGLILLGLARC 116 (328)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHcCchHHH-HHHHHHHHHHHHHHHHHHHHHc---CCC-----HHHHHHHHHHHhcch
Confidence 3466789999999999999987666544332 22333333 3444444331 111 12445544422222
Q ss_pred HHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C-----CC-hhHHHHHHHHHHHHHHHHHHHHHH
Q 004461 173 PVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSG-Q-----SS-LVPVWVFLSGCVFVICLTLFVPPT 245 (752)
Q Consensus 173 ~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~-~-----~~-~~~~~~~~~~v~~~~~~~~v~~~~ 245 (752)
.+.+.++..+- +.+.. ++++...++.+++.+++.....+..+. . .. .-..+.+...+...++.-.+.+-+
T Consensus 117 g~~S~v~T~lA--kGnva-lsv~lt~~stLl~~~~~P~l~~ll~~~~~~~~~~~~v~v~~~~~~~~l~~~v~lPlvlG~~ 193 (328)
T TIGR00832 117 IAMVFVWNQLA--KGDPE-YTLVLVAVNSLFQVFLYAPLAWLLLGVSPIWLGLTVITVPWETIAKSVLIYLGIPLIAGIL 193 (328)
T ss_pred HHHHHHHHHHc--CCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceeeeCHHHHHHHHHHHHHHHHHHHHH
Confidence 22333444433 44433 555666778777777664443222111 0 00 012223333333333333333333
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHhhH--HHHHHHhhccccchhhchh-hhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004461 246 FKWMARQCHEGPFANALVEKVEDLVSGIFL--PLYFVSSGLKTNIATIQGL-QSWGLLALVILTACLGKIVGTFVVSLSF 322 (752)
Q Consensus 246 ~~~~~~~~~eg~~~~~l~~kl~~~~~~~~~--piFFv~~Gl~~d~~~l~~~-~~~~~~~~~~~~~~~~K~~~~~l~~~~~ 322 (752)
.++...+.. ++ +...+|+.+....+-. -++.+.+....+-..+... ..+..+...+++..+.-+...+..++.+
T Consensus 194 lr~~~~~~~-~~--~~~~~~~~~~~~~~~~l~l~~iv~~~~~~~~~~i~~~~~~i~~~~~~v~l~~~~~~~lg~~~~r~~ 270 (328)
T TIGR00832 194 TRYWLLKRK-GR--EWYEKVFLPKISPWSLIALLFTIVLLFAFQGETIIELPLDIALIAIPLLIYFYIMFFLTFALAKKL 270 (328)
T ss_pred HHHHHHHcc-ch--HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333222210 11 1111243332221111 1222222222222222211 1122222334445556677778888999
Q ss_pred CCChHHHHHHHHHhhhhH-HHHHHHHH
Q 004461 323 KVPLREALALGILMNTKG-LVELIVLN 348 (752)
Q Consensus 323 ~~~~~~~~~lgl~l~~rG-~v~l~l~~ 348 (752)
|.+.+|+..+.+--+.|- ..++.++.
T Consensus 271 ~l~~~~~~a~~~e~g~qN~~lai~lA~ 297 (328)
T TIGR00832 271 GLPYSITAPAAFTGASNNFELAIAVAI 297 (328)
T ss_pred CcChhhhhhheehhhhhhHHHHHHHHH
Confidence 999999988887666653 44444444
No 62
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=97.35 E-value=0.095 Score=56.25 Aligned_cols=226 Identities=16% Similarity=0.179 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHHhhccChhhHHhcCchh---hHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHH---
Q 004461 94 DTLANLGLIFFMFLVGLELDPKSLRQTGKKA---LGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVAL--- 167 (752)
Q Consensus 94 ~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~---~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~l--- 167 (752)
+.....++..++|..|+.++.+++++..|+. ...-...+++.-++++++...+.... ...+..|...
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~-------~~~l~~Gl~~~~~ 102 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFL-------PPELALGLLILAC 102 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccC-------CHHHHHHHHHHhh
Confidence 4667788888889999999999998755443 22222233333233444444443211 1123333332
Q ss_pred -hhc-cHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCC--h-hHHHHHHHHHHHHHHHHHH
Q 004461 168 -SIT-AFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSG-SGQSS--L-VPVWVFLSGCVFVICLTLF 241 (752)
Q Consensus 168 -s~T-s~~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll~v~~~~~~-~~~~~--~-~~~~~~~~~v~~~~~~~~v 241 (752)
-.| +..++.. .. .+.+ -..++..+.++.++++++.-+...+.. +.... . ..+.-++..+++=.+.+.+
T Consensus 103 lPtTv~S~v~~T---~~--AgGN-~a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~~~L~~~vllP~~~Gq~ 176 (313)
T PF13593_consen 103 LPTTVSSSVVLT---RL--AGGN-VALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVLIKLVLTVLLPLVLGQL 176 (313)
T ss_pred CCchhhHHHHHH---HH--cCCC-HHHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 222 3333333 21 2333 445667788889998888766665443 22211 1 1122233333333444555
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhHHHHHHHhhc-cccc-hhhchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004461 242 VPPTFKWMARQCHEGPFANALVEKVEDLVSGIFLPLYFVSSGL-KTNI-ATIQGLQSWGLLALVILTACLGKIVGTFVVS 319 (752)
Q Consensus 242 ~~~~~~~~~~~~~eg~~~~~l~~kl~~~~~~~~~piFFv~~Gl-~~d~-~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~ 319 (752)
+|+......+|. +....+++.. .+++-+|-.+++. .-+. ..... ..+.....+.+...+.-+..++..+
T Consensus 177 ~r~~~~~~~~~~------~~~~~~~~~~--~ll~iv~~~fs~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~ 247 (313)
T PF13593_consen 177 LRRWVPKWVARH------KKPLSLLSQL--ALLLIVYSAFSSAFAQGAWHSVSA-AALALIVAVSLLLLLVVLVLGWLAA 247 (313)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHH--HHHHHHHHHHHHHHhhchhhhCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554433222221 2234444433 2233334333332 1111 12221 1222233333444444556677888
Q ss_pred HhcCCChHHHHHHHHHhhhhHH
Q 004461 320 LSFKVPLREALALGILMNTKGL 341 (752)
Q Consensus 320 ~~~~~~~~~~~~lgl~l~~rG~ 341 (752)
+.++++++|...+-+.-++|..
T Consensus 248 r~~~~~~~d~iA~~F~gs~Ksl 269 (313)
T PF13593_consen 248 RLLGFSRPDRIAVLFCGSQKSL 269 (313)
T ss_pred hhcCCChhhEEEEEEEcCcCcc
Confidence 8999999999888876666653
No 63
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=97.30 E-value=0.0012 Score=76.23 Aligned_cols=121 Identities=14% Similarity=0.093 Sum_probs=87.7
Q ss_pred CCcceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHH
Q 004461 405 KAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVA 484 (752)
Q Consensus 405 ~~e~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 484 (752)
....|||||++++++++++++.+..+|.. ..+..+++||........+ +...+-++.
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~~---~~a~~~av~v~~~~~~~~~--------------------~~~~~~l~~ 302 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLASR---LHAKWTAVYVETPELHRLS--------------------EKEARRLHE 302 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHHHH---hCCCeEEEEEecccccccc--------------------HHHHHHHHH
Confidence 45579999999999999999999999954 6667799998743321111 111223333
Q ss_pred HHHhhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCC
Q 004461 485 FEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPC 558 (752)
Q Consensus 485 ~~~~~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC 558 (752)
..+.+++-+-.+.+ ..+ ++++++|.++|++.++.-||+|-+.++++...+ .|++.+++.+++|-
T Consensus 303 ~~~Lae~lGae~~~--l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~------~~~l~~~L~~~~~~ 366 (890)
T COG2205 303 NLRLAEELGAEIVT--LYG--GDVAKAIARYAREHNATKIVIGRSRRSRWRRLF------KGSLADRLAREAPG 366 (890)
T ss_pred HHHHHHHhCCeEEE--EeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHh------cccHHHHHHhcCCC
Confidence 33444443333333 334 699999999999999999999999888776666 69999999999875
No 64
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=97.04 E-value=0.076 Score=56.94 Aligned_cols=258 Identities=12% Similarity=0.091 Sum_probs=130.5
Q ss_pred HHHHHHhhccChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhhhh-ccCCchhHHHHHHHHHHhhccHHHHHHHHHH
Q 004461 103 FFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETI-SKGVDSTSFLVFMGVALSITAFPVLARILAE 181 (752)
Q Consensus 103 ~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~e 181 (752)
.++|-.|-.+|++...+..||...+.+.-+.+..+++.++..++.... ..+.......+....++..+...+-...+.+
T Consensus 55 ~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~~~~~~~~~~~g~~~i~~gl~~G~s~la~~a~l~~~N~~ly~~~~~~ 134 (326)
T PRK05274 55 VFLFCMGASINLRATGTVLKKGGTLLLTKFAVAALVGVIAGKFIGEEGIRLGGFAGLSTLAIIAAMDNTNGGLYAALMGQ 134 (326)
T ss_pred HHHHHcCCEEeccccchhhhhchhHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 688999999999998888888888877777777777776666665411 0000112345556667777777777777778
Q ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHH
Q 004461 182 LKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGPFANA 261 (752)
Q Consensus 182 l~ll~s~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~eg~~~~~ 261 (752)
.+. +.+.|..++-+ ++|.--..+..+.. ......+.. .+++.. +.++.+...+-+...+.+
T Consensus 135 ~g~-~~d~ga~i~ls--l~~Gp~~tM~lL~a--agla~~p~~---~li~al-lplliG~~lgnl~~~l~~---------- 195 (326)
T PRK05274 135 YGT-KEDAGAFVLMS--LEDGPFMTMLALGA--AGLASFPPP---ALVGAV-LPLLVGFILGNLDPELRQ---------- 195 (326)
T ss_pred hCC-CCCcchHHHHH--HhhhHHHHHHHHHh--hCcccCCCc---hhhHHH-HHHHHHHHHHhHHHhhHH----------
Confidence 773 46666665443 45554322222111 111111111 122222 233333333332211111
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH---HHHHHHHHhhh
Q 004461 262 LVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLR---EALALGILMNT 338 (752)
Q Consensus 262 l~~kl~~~~~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~---~~~~lgl~l~~ 338 (752)
.+...-.+++|++-...|.++|+.++... .+.- +++.+..++......+...|+++.... -+...+..-+.
T Consensus 196 ----~~~~Gi~~lLp~~~~~lG~~l~lq~i~~~-G~~G-ilL~~~~~~~t~~~~~~~~Rl~~~~~g~~g~a~~ttaG~ai 269 (326)
T PRK05274 196 ----FLGKAVPVLIPFFAFALGNGIDLGTIITA-GLSG-ILLGVAVVAVTGIPLYLADRLIGGGNGVAGAAAGSTAGNAV 269 (326)
T ss_pred ----HhcCCcEEEHHHHHHHHhcceeHhHHHhc-CCcc-hhhhhhHhhccchhhHhHhheeecCCCcchHHHHHHHHHHH
Confidence 11112345899999999999999887642 2322 222233333444444555577753222 22222221121
Q ss_pred hHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHhchhhh
Q 004461 339 KGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVM-AVYKPARR 388 (752)
Q Consensus 339 rG~v~l~l~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~pl~~-~l~~~~~~ 388 (752)
-|-.. ++......+-..+. .++-|.++++.|++..|++. +++|+.++
T Consensus 270 c~pAA--vaa~~p~~~~~~~~-at~~VA~~vivt~il~P~l~~~~~k~~~~ 317 (326)
T PRK05274 270 ATPAA--VAAADPSFAPFAPA-ATAQVAAAVIVTAILAPILTAWWSKRVGK 317 (326)
T ss_pred HHHHH--HHhhccccccchHh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 12222 22222222333333 33334445555666666654 55554333
No 65
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=96.96 E-value=0.65 Score=49.27 Aligned_cols=231 Identities=13% Similarity=0.133 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHhhccChhhHHhcCch--hhHHHHH-HH-HHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHH-h
Q 004461 94 DTLANLGLIFFMFLVGLELDPKSLRQTGKK--ALGIAIA-GI-SLPFALGIGSSFLLRETISKGVDSTSFLVFMGVAL-S 168 (752)
Q Consensus 94 ~~l~~lgl~~llF~~Gle~d~~~l~~~~~~--~~~i~~~-~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~l-s 168 (752)
..+....+.+.||..|+.++.+++++..|+ ....++. .+ +.|++. ++++..++. + .....|..+ +
T Consensus 7 ~~~~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla-~~l~~~~~l----~-----~~~~~glvL~~ 76 (286)
T TIGR00841 7 STILLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTG-FLLAKVFKL----P-----PELAVGVLIVG 76 (286)
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHH-HHHHHHhCC----C-----HHHHHHHHhee
Confidence 333344488899999999999999886653 3333333 33 344433 444443321 1 123333333 2
Q ss_pred hccHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCC-hhHHHHHHHH---HHHHHHHHHHH
Q 004461 169 ITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSG--QSS-LVPVWVFLSG---CVFVICLTLFV 242 (752)
Q Consensus 169 ~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~--~~~-~~~~~~~~~~---v~~~~~~~~v~ 242 (752)
.+..++.+.++.++- +. -..++.+...++-+++.+.+.+...+..+. ... ....+.+... ++.=+..+.+.
T Consensus 77 ~~P~~~~s~v~t~~~--~g-n~~la~~~~~~stlls~vt~Pl~l~~~~~~~~~~~~~v~~~~i~~~~~~v~vPl~lG~~~ 153 (286)
T TIGR00841 77 CCPGGTASNVFTYLL--KG-DMALSISMTTCSTLLALGMMPLLLYIYAKMWVDGTLVVPYLGIGLSLVAVLIPVSIGMLV 153 (286)
T ss_pred eCCCchHHHHHHHHh--CC-CHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecHHHHHHHHHHHHHHHHHHHHH
Confidence 222223334444443 22 245555666667777776665544333221 111 0112222222 22222333333
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhHHHHHHHhhccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004461 243 PPTFKWMARQCHEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF 322 (752)
Q Consensus 243 ~~~~~~~~~~~~eg~~~~~l~~kl~~~~~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~ 322 (752)
|....+.. +. .+++..+....+.-+.+..++.+.+ .+.. ..+. ..+..++..+.-+...|..++.+
T Consensus 154 r~~~p~~~---------~~-~~~~~~~s~~~l~liv~~~~~~~~~--~i~~-~~~~-~~~~~~ll~~~~~~~g~~~a~~~ 219 (286)
T TIGR00841 154 KHKLPQIA---------KI-ILKVGLISVFLLSVIIAVVGGINVE--NLAT-IGPL-LLLVGILLPLAGFLLGYLLAKLA 219 (286)
T ss_pred HHHhHHHH---------HH-HHhCchHHHHHHHHHHHHHHHhhHH--HHHH-hhHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33322221 11 2223333222222223333333333 2322 2232 23334444555667777788889
Q ss_pred CCChHHHHHHHHHhhhhH-HHHHHHHHhhh
Q 004461 323 KVPLREALALGILMNTKG-LVELIVLNIGK 351 (752)
Q Consensus 323 ~~~~~~~~~lgl~l~~rG-~v~l~l~~~~~ 351 (752)
|.+.+|+..+++-.+.|= ...+.++....
T Consensus 220 ~l~~~~~~t~~~~~g~qN~~lal~la~~~f 249 (286)
T TIGR00841 220 GLPWARCRTISIEVGMQNSQLCSTIAQLSF 249 (286)
T ss_pred CCCHhhheeeeeeeecccHHHHHHHHHHhc
Confidence 999888887777665543 45555555443
No 66
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=96.88 E-value=0.18 Score=53.66 Aligned_cols=268 Identities=15% Similarity=0.200 Sum_probs=134.9
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHh------hccChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhH
Q 004461 85 FPPKSQTVLDTLANLGLIFFMFLVG------LELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTS 158 (752)
Q Consensus 85 fp~~~~~~l~~l~~lgl~~llF~~G------le~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 158 (752)
+|.+..+....+.+=+=.+.+|.++ |.||.+.+-|...+-+...+.+++...+.|.+++..++..+.+..-..
T Consensus 95 lp~~~i~avt~fm~~snFL~fyIA~LI~GSILgmnRklLIk~~~~~i~~il~g~v~A~~~g~lVG~~~G~~~~d~~m~~- 173 (438)
T COG3493 95 LPSNVIKAVTNFMGKSNFLDFYIAALIVGSILGMNRKLLIKSLKRYIPPILAGMVGAAAVGILVGLLFGLSFQDTMMYV- 173 (438)
T ss_pred CCHHHHHHHHHHhcCCChHHHHHHHHHHhhhhhccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCChHHeeeeE-
Confidence 3444433333333333333455554 478888888888888888888888888888888887765432100000
Q ss_pred HHHHHHHHHhhccHH--HHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CC--------Ch
Q 004461 159 FLVFMGVALSITAFP--VLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSG------QS--------SL 222 (752)
Q Consensus 159 ~~l~l~~~ls~Ts~~--vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~------~~--------~~ 222 (752)
..-..|--...-+.| .++.- -.+....+.=..++.+..+.++++++.-+++--+.... +. ..
T Consensus 174 vlPIM~GG~GaGavPLS~iYs~--itg~s~~~~~s~lipal~igNvfAIi~aall~~iG~K~psltGnG~Lv~~~~~~~~ 251 (438)
T COG3493 174 VLPIMGGGMGAGAVPLSEIYSS--ITGGSQEEYFSQLIPALTIGNVFAIICAALLNKIGKKKPSLTGNGELVRSKSKEAT 251 (438)
T ss_pred EeeeccCCCCCCcccHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCccCCceEEeccccchh
Confidence 000000000001111 11211 12323445556677888888888888777665442210 00 00
Q ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hcCC-CchHHHHHHHHHHHHH-HhhH
Q 004461 223 ---------VPVWVFLSGCVFVICLTLFVPPTFKWMAR----------------QCHE-GPFANALVEKVEDLVS-GIFL 275 (752)
Q Consensus 223 ---------~~~~~~~~~v~~~~~~~~v~~~~~~~~~~----------------~~~e-g~~~~~l~~kl~~~~~-~~~~ 275 (752)
.....+... .+...+.|....++..+.. ...- ++--++=..++..|.+ .+.-
T Consensus 252 ~ee~~~~~k~d~~~~g~G-~llA~~lf~~g~il~kf~~~P~~va~MIil~a~lk~~nlvp~~i~~GA~~l~~F~sk~~t~ 330 (438)
T COG3493 252 EEELEKEGKLDLKLMGAG-MLLACTLFMAGGILGKFIGLPGPVAFMIILVAILKAANLVPKEIEEGAKQLSQFFSKNLTW 330 (438)
T ss_pred hhhhhhccCccHHHHHHH-HHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHhhHH
Confidence 011111111 1122222222222222111 1100 1111111223443333 3344
Q ss_pred HHHHHHhhcc-ccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH-HHhhhhH-HHHHHHHHhhhc
Q 004461 276 PLYFVSSGLK-TNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALG-ILMNTKG-LVELIVLNIGKD 352 (752)
Q Consensus 276 piFFv~~Gl~-~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg-l~l~~rG-~v~l~l~~~~~~ 352 (752)
| ..+.+|.. +|+..+.+..+|..+ ++.+..+++-..+.++.+|+.++-+-|+...+ +.|+.+| .=|+++.+.+-.
T Consensus 331 ~-Lm~giGv~ytdl~ev~~alt~~~v-ii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~GGtGDvaVLsAa~R 408 (438)
T COG3493 331 P-LMAGIGVAYTDLNEVAAALTWQNV-IIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMGGTGDVAVLSAADR 408 (438)
T ss_pred H-HHHhhhhccccHHHHHHHhchhHH-HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCCCCCchHHhhhcch
Confidence 4 44567776 888877665556543 34445556778888999999998776665544 8887665 556777776666
Q ss_pred cCCCCH
Q 004461 353 RKVLND 358 (752)
Q Consensus 353 ~~~i~~ 358 (752)
.++++.
T Consensus 409 M~LmpF 414 (438)
T COG3493 409 MELMPF 414 (438)
T ss_pred hccccH
Confidence 666654
No 67
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=96.79 E-value=0.74 Score=49.68 Aligned_cols=144 Identities=13% Similarity=0.156 Sum_probs=80.3
Q ss_pred HcccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccChhhHHhcCchhhHHHHH
Q 004461 51 LRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIA 130 (752)
Q Consensus 51 l~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~ 130 (752)
++..+++.++--|+.|+++|.......+. .. .+.-...-+.+=.+|+++ .|.++++.++.+.+.+.+.+...
T Consensus 26 ~~~~~l~~~~~AillG~~l~n~~~~~~~~---~~-~~Gi~f~~k~lLr~gIVL----lG~~l~~~~i~~~G~~~l~~~~~ 97 (335)
T TIGR00698 26 LADPALSALFLAILLGMVAGNTIYPQRDE---EK-KRGVLFAKPFLLRIGITL----YGFRLTFPYIADVGPNEIVADTL 97 (335)
T ss_pred hccCCCcHHHHHHHHHHHHhccccccchh---hc-cchHHHHHHHHHHHHHHH----HCccccHHHHHHhhHHHHHHHHH
Confidence 45568999999999999999754211111 00 011112334666777764 59999999999999988877766
Q ss_pred HHHHHHHHHHHHH-HHhhhhhccCCchhHHHHHHHHHHhh---ccHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHH
Q 004461 131 GISLPFALGIGSS-FLLRETISKGVDSTSFLVFMGVALSI---TAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWI 206 (752)
Q Consensus 131 ~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~l~l~~~ls~---Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ 206 (752)
.+..++.++..++ ..++. +. ..++++++-.++ ++...+.+++ | .+.+....+++.-.+-+.++.+
T Consensus 98 ~v~~~~~~~~~~g~k~l~l----~~---~~~~Lia~GtsICGaSAi~A~a~~i---~-A~~~~~a~ava~V~lfgt~am~ 166 (335)
T TIGR00698 98 ILTSTFFLTVFLGSSRLKL----DK---QMSILLGAGSSICGAAAVAAIEPVI---K-AEKEKVSVAIAIVVIFGTTGIF 166 (335)
T ss_pred HHHHHHHHHHHHHHHHhCC----Ch---hHHHHHHcchhHHHHHHHHHhcccc---C-CCccceeeeehHHHHHHHHHHH
Confidence 6666666555444 23321 22 234444433322 2222333332 2 2333344555555555666666
Q ss_pred HHHHHHH
Q 004461 207 LLALAVA 213 (752)
Q Consensus 207 ll~v~~~ 213 (752)
++-.+..
T Consensus 167 l~P~l~~ 173 (335)
T TIGR00698 167 LYPSIYH 173 (335)
T ss_pred HHHHHHH
Confidence 6654443
No 68
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=96.75 E-value=0.12 Score=56.65 Aligned_cols=240 Identities=15% Similarity=0.200 Sum_probs=143.0
Q ss_pred hccChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHH-----hhccHHHHHHHHHHccc
Q 004461 110 LELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVAL-----SITAFPVLARILAELKL 184 (752)
Q Consensus 110 le~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~l-----s~Ts~~vv~~iL~el~l 184 (752)
+.||.+.+.|...|-+...+.+.+..++++.+++.+++..+. ...+.+++-. ..-+.|...-.-+-++.
T Consensus 109 Lgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~------~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~ 182 (414)
T PF03390_consen 109 LGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGYSFK------DAIFYIVLPIMGGGMGAGAVPLSQIYAEALGQ 182 (414)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH------HHHHHHHhhhcCCCccccHhHHHHHHHHHhCC
Confidence 489999999999999888888988888888888888876431 1222233222 11122222211122343
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------C------C---C-------hhHHHHHHHHHHHHHHHHHHH
Q 004461 185 LTADVGRMAMSAAAVNDVAAWILLALAVALSGSG------Q------S---S-------LVPVWVFLSGCVFVICLTLFV 242 (752)
Q Consensus 185 l~s~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~------~------~---~-------~~~~~~~~~~v~~~~~~~~v~ 242 (752)
...+.=..++.+.++.++++++.-+++.-+.... + . . .... .-...-++..+.+|.+
T Consensus 183 ~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~~~~~~~~~~~~~~~~-~~~g~Gllla~~~y~~ 261 (414)
T PF03390_consen 183 DAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGDDEEEEAKKKEKPIDF-SDMGAGLLLACSFYIL 261 (414)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCccccccccccCCCCCH-HHHHHHHHHHHHHHHH
Confidence 4455666677889999999998888776553211 0 0 0 0011 1112222334444444
Q ss_pred HHHHHHHHHhcCC--------------CchHHHH---HHHHHHHHHHhhHHHHHHHhhcc-ccchhhchhhhHHHHHHHH
Q 004461 243 PPTFKWMARQCHE--------------GPFANAL---VEKVEDLVSGIFLPLYFVSSGLK-TNIATIQGLQSWGLLALVI 304 (752)
Q Consensus 243 ~~~~~~~~~~~~e--------------g~~~~~l---~~kl~~~~~~~~~piFFv~~Gl~-~d~~~l~~~~~~~~~~~~~ 304 (752)
..++..+. .-+. +-..+.+ .++...+...-+.+...+-+|+. +|+.++....++. .++++
T Consensus 262 G~ll~~~i-~ih~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~-~vv~~ 339 (414)
T PF03390_consen 262 GVLLSKLI-GIHAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQ-YVVIV 339 (414)
T ss_pred HHHHHHhc-CCcHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHH-HHHHH
Confidence 44444333 1121 1112223 33444555566667777888998 9998887655555 34555
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHH-HHHHHHhhhh-HHHHHHHHHhhhccCCCCH
Q 004461 305 LTACLGKIVGTFVVSLSFKVPLREA-LALGILMNTK-GLVELIVLNIGKDRKVLND 358 (752)
Q Consensus 305 ~~~~~~K~~~~~l~~~~~~~~~~~~-~~lgl~l~~r-G~v~l~l~~~~~~~~~i~~ 358 (752)
+..+++-.+++++.+++.|+.+-|+ +..|+.++.+ |.=|+++.+.+...+++.-
T Consensus 340 ~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~LmpF 395 (414)
T PF03390_consen 340 LATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVLSAANRMELMPF 395 (414)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchheehhhhcccccH
Confidence 6667778889999999999866665 5566566554 4567777777777776653
No 69
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.67 E-value=0.69 Score=49.32 Aligned_cols=140 Identities=22% Similarity=0.260 Sum_probs=81.4
Q ss_pred ccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccChhhHHhcCchhhHHHHHHH
Q 004461 53 PLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGI 132 (752)
Q Consensus 53 rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~ 132 (752)
..+++.++--|+.|+++|+..++..+.+ .+.....-+.+-.+|+++ .|.++++..+.+.+.+.+.+.+..+
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~~-----~~Gi~~~~k~~Lr~gIVL----lG~~l~~~~i~~~G~~~~~~~~~~v 93 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPARF-----KPGIKFSSKKLLRLGIVL----LGFRLSFSDILALGWKGLLIIIIVV 93 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHHH-----HhHHHHHHHHHHHHHHHH----HCccccHHHHHHhCccHHHHHHHHH
Confidence 4688999999999999996333332211 011111234666777764 5999999999999998888888777
Q ss_pred HHHHHHHHHHH-HHhhhhhccCCchhHHHHHHHHHHhh---ccHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHH
Q 004461 133 SLPFALGIGSS-FLLRETISKGVDSTSFLVFMGVALSI---TAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILL 208 (752)
Q Consensus 133 ~~~~~~~~~~~-~~l~~~~~~~~~~~~~~l~l~~~ls~---Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll 208 (752)
.+++.+++.++ ..++. +. ..+.+++.-.++ ++...+.+++ | .+.+.-..+++...+=..++.+++
T Consensus 94 ~~~~~~~~~lg~r~~~l----~~---~~~~Lia~GtsICG~SAi~A~a~~i---~-a~~~~~a~ava~V~lfg~vam~~~ 162 (305)
T PF03601_consen 94 ILTFLLTYWLGRRLFGL----DR---KLAILIAAGTSICGASAIAATAPVI---K-AKEEDVAYAVATVFLFGTVAMFLY 162 (305)
T ss_pred HHHHHHHHHHHHHHhCC----CH---HHHHHHHhhcccchHHHHHHHcccc---c-CCCCceeeeehHHHHHHHHHHHHH
Confidence 77777766555 44432 22 334455444433 3333334443 2 122334444455555555555555
Q ss_pred HHHH
Q 004461 209 ALAV 212 (752)
Q Consensus 209 ~v~~ 212 (752)
-.+.
T Consensus 163 P~l~ 166 (305)
T PF03601_consen 163 PLLG 166 (305)
T ss_pred HHHH
Confidence 5443
No 70
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=96.52 E-value=0.0069 Score=51.56 Aligned_cols=49 Identities=20% Similarity=0.031 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhH-HHHHHHhhcCCCceE
Q 004461 507 DMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFR-WVNQRVLKHAPCSVG 561 (752)
Q Consensus 507 ~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~g-sv~~~Vl~~ApC~V~ 561 (752)
.+.+.+.+.|++.++|.|++|.|+....+..+ .| ++..++.+.++|||.
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~------~~~~~~~~~~~~~~~~vl 84 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGRRL------GASANVLVVIKGAGIPVL 84 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhhcc------CchhhhhhcccccCCcee
Confidence 57788899999999999999999987776665 56 888999999999963
No 71
>PRK10490 sensor protein KdpD; Provisional
Probab=96.05 E-value=0.037 Score=68.17 Aligned_cols=124 Identities=9% Similarity=0.012 Sum_probs=83.6
Q ss_pred cceEEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhcCCCCCeEEE
Q 004461 579 VSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYE 658 (752)
Q Consensus 579 ~~~~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~v~~~ 658 (752)
...||+|...|+|.++..++.+.|||.+.++++++++|.+++... ..+.+++.-.+.+ ++..++.. . +.
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~------~~~~~~~~l~~~~-~lA~~lGa--~--~~ 317 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHR------LPEKKRRAILSAL-RLAQELGA--E--TA 317 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCc------CCHHHHHHHHHHH-HHHHHcCC--E--EE
Confidence 456899999999999999999999999999999999998764322 1111221122333 24444432 1 33
Q ss_pred EEEecChHHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccccchhhhccCCCCceeEEEE
Q 004461 659 ERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLII 724 (752)
Q Consensus 659 e~~v~~g~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvv 724 (752)
...-.|.++++....+..+.+.||||+++ ..+ | . --|++.|.|....-. ..|.||
T Consensus 318 ~~~~~dva~~i~~~A~~~~vt~IViG~s~----~~~---~--~-~~~s~~~~l~r~~~~-idi~iv 372 (895)
T PRK10490 318 TLSDPAEEKAVLRYAREHNLGKIIIGRRA----SRR---W--W-RRESFADRLARLGPD-LDLVIV 372 (895)
T ss_pred EEeCCCHHHHHHHHHHHhCCCEEEECCCC----CCC---C--c-cCCCHHHHHHHhCCC-CCEEEE
Confidence 33445666666655555569999999998 332 4 1 247999999886433 578888
No 72
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=95.69 E-value=0.11 Score=51.36 Aligned_cols=130 Identities=25% Similarity=0.398 Sum_probs=87.4
Q ss_pred HHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccCh-----hhHHhcCchhhHHHHHHHHH
Q 004461 60 IAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDP-----KSLRQTGKKALGIAIAGISL 134 (752)
Q Consensus 60 v~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~-----~~l~~~~~~~~~i~~~~~~~ 134 (752)
++.+++|+++|-..... ....+...+..+.+++|.+|+++-- +.+|+.+++++.+.+..++-
T Consensus 2 l~~li~Gi~lG~~~~~~-------------~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlG 68 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP-------------FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILG 68 (191)
T ss_pred eeeHHHHHHHHHHhccc-------------ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44577889988533211 1123678889999999999998744 45777889999999999999
Q ss_pred HHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 004461 135 PFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVA 213 (752)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll~v~~~ 213 (752)
+++.+.+++.++.... .+++.++.-+. =+.....++.|++ +.+.|.++.=+=++-+++++++.-++.-
T Consensus 69 Sllgg~l~~~ll~~~~-------~~~lav~sG~G--wYSlsg~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P~~~r 136 (191)
T PF03956_consen 69 SLLGGLLASLLLGLSL-------KESLAVASGFG--WYSLSGVLITQLY--GPELGTIAFLSNLFREILAIILIPLLAR 136 (191)
T ss_pred HHHHHHHHHHHhcCCH-------HHHHHHHccCc--HHHhHHHHHHhhh--CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888877774321 34444444331 1222223344443 5689999888888888888877765443
No 73
>PRK03818 putative transporter; Validated
Probab=95.68 E-value=0.33 Score=56.30 Aligned_cols=131 Identities=20% Similarity=0.289 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHH-HcccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q 004461 34 ILQICLVILLTRGLAFI-LRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLEL 112 (752)
Q Consensus 34 l~~i~lil~~~~~~~~l-l~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~ 112 (752)
++-+++.+.+..+++.+ ++.+++- +.|-+++|+++|...- . ++. + -+.....++.++|+.+|+|.+|++.
T Consensus 8 ~~~l~l~i~lG~~lG~i~i~g~~LG-~~g~L~~gl~~G~~~~----~-~~~--~-~~~~~~~~~~~~gl~lFv~~vGl~~ 78 (552)
T PRK03818 8 VSILALVAVVGLWIGNIKIRGVGLG-IGGVLFGGIIVGHFVS----Q-FGL--T-LDSDMLHFIQEFGLILFVYTIGIQV 78 (552)
T ss_pred HHHHHHHHHHHHhhcceEECCCccc-cHHHHHHHHHHhcccc----c-cCc--c-cChHHHHHHHHHHHHHHHHHHhhcc
Confidence 33344445544444442 2233444 4888999999995211 0 000 0 1335567799999999999999999
Q ss_pred ChhhH---HhcCchhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHH-HHhhccHHHHHHHHHHc
Q 004461 113 DPKSL---RQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV-ALSITAFPVLARILAEL 182 (752)
Q Consensus 113 d~~~l---~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~-~ls~Ts~~vv~~iL~el 182 (752)
-+..+ |+.+.+...+++.-.+++++++++..+++.. + .....|+ +-+.|++|.+.......
T Consensus 79 Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~G~~aGa~T~tp~l~aa~~~~ 143 (552)
T PRK03818 79 GPGFFSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGI----P-----LPVMLGIFSGAVTNTPALGAGQQIL 143 (552)
T ss_pred cHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC----C-----HHHHHHHhhccccccHHHHHHHHHH
Confidence 98765 4445555556666666666665555443332 1 1233333 44678888777665433
No 74
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=95.36 E-value=0.35 Score=46.81 Aligned_cols=125 Identities=25% Similarity=0.304 Sum_probs=78.3
Q ss_pred HHHHHHHHHH-H-cccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccChhh--
Q 004461 41 ILLTRGLAFI-L-RPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKS-- 116 (752)
Q Consensus 41 l~~~~~~~~l-l-~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~-- 116 (752)
+.+...++.+ . +++++-...|-+++|+++|.. +...+. + .+....+.+.++|+.+|++.+|++--++.
T Consensus 6 i~lG~llG~i~i~~~~~LG~a~G~L~vgL~~G~~--~~~~~~----~--~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~ 77 (169)
T PF06826_consen 6 IALGYLLGRIKIPGGFSLGAAGGVLFVGLILGAL--GRTGPI----F--LPISAPSFLRQLGLALFLAAVGLSAGPGFFS 77 (169)
T ss_pred HHHHHHhcceeeccceeccccHHHHHHHHHHHHh--hhccCC----C--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433 2 556667777999999999842 211111 1 13455678999999999999999988865
Q ss_pred -HHhcCchhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHH-HHhhccHHHHHHHHHH
Q 004461 117 -LRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV-ALSITAFPVLARILAE 181 (752)
Q Consensus 117 -l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~-~ls~Ts~~vv~~iL~e 181 (752)
+|+.+.+...+++.-.++|.++++..++.+.+ .+ .....|. +-+.|++|......+.
T Consensus 78 ~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~-----l~---~~~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 78 SLKRGGLKLLLLGVIITLVPLLIALVIGRYLFK-----LN---PGIAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CC---HHHHHHHHHccccCcHHHHHHHHh
Confidence 45566666666776666777776666653321 21 1233333 4466887877776555
No 75
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=95.34 E-value=0.84 Score=45.07 Aligned_cols=160 Identities=19% Similarity=0.252 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhhccChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHhh-hhhccCCchhHHHHHHHHHHhh-ccHHHHH
Q 004461 99 LGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLR-ETISKGVDSTSFLVFMGVALSI-TAFPVLA 176 (752)
Q Consensus 99 lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~l~l~~~ls~-Ts~~vv~ 176 (752)
+.+.+.||..|++++++++++..|+...+. .+.+..+++.=++++.+. ..+. . ...+..|..+.. +.-+..+
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~-~~l~~~~~i~Plla~~l~~~~~~-~----~~~~~~Gl~l~~~~P~~~~s 75 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLL-IGLLAQFLIMPLLAFGLAWLLLP-L----SPALALGLLLVAACPGGPAS 75 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHH-HHHHHHHHHHHHHHHHHH-HHTT-------HHHHHHHHHHHHS-B-THH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHH-HHHHHHHHHHHHHHHHHHHHHhc-C----CHHHHHHHHHHhcCCcHHHH
Confidence 457789999999999999998776654432 222233333222233332 1111 1 112333333322 1112234
Q ss_pred HHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004461 177 RILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLV--PVWVFLSGCVFVICLTLFVPPTFKWMARQCH 254 (752)
Q Consensus 177 ~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~ 254 (752)
.+...+- +.+. .++.+...++.+.+.++.-+...+..+...... ..+..+..+...+++-.+.+-+.++...+
T Consensus 76 ~~~t~l~--~Gd~-~ls~~lt~istll~~~~~P~~~~l~~~~~~~~~~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p~-- 150 (187)
T PF01758_consen 76 NVFTYLA--GGDV-ALSVSLTLISTLLAPFLMPLLLYLLSGGSVDVDSISPWDIIKSLLLIVILPLLLGMLLRKYLPR-- 150 (187)
T ss_dssp HHHHHHT--T--H-HHHHHHHHHHHHHHHHHHHHHHHHHH-GGGHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHG---
T ss_pred HHHHHHh--CCCc-ccccceeeHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHheehHHHhHHHHHHHHhhH--
Confidence 4444432 3333 366666777777777776655554433211111 13333343333333334444434433331
Q ss_pred CCchHHHHHHHHHHHH
Q 004461 255 EGPFANALVEKVEDLV 270 (752)
Q Consensus 255 eg~~~~~l~~kl~~~~ 270 (752)
..+.+.+.++++.+.
T Consensus 151 -~~~~~~~~~~~~~~s 165 (187)
T PF01758_consen 151 -EKFARRLKPFLKPLS 165 (187)
T ss_dssp -GGG-HHHHCCHHHHH
T ss_pred -HHHHHHHHHHhhHHH
Confidence 234445555555553
No 76
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.27 E-value=0.54 Score=55.55 Aligned_cols=68 Identities=18% Similarity=0.349 Sum_probs=44.0
Q ss_pred HHHHHHHcccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccChhhHHhcCch
Q 004461 45 RGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKK 123 (752)
Q Consensus 45 ~~~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~ 123 (752)
....++...+|++..+|-.++|++++.+-.. + .-...++.+..+=+.+|...+|+++|+..+...+..
T Consensus 229 ~~~a~la~~~Gls~~lGAFlAGl~l~~~~~~------~-----~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~~ 296 (621)
T PRK03562 229 FGFGLLMEEVGLSMALGAFLAGVLLASSEYR------H-----ALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLR 296 (621)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHhcCCccH------H-----HHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHH
Confidence 3345566677788888888888888742111 0 112345556666666777788999999988765443
No 77
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.07 E-value=0.73 Score=54.26 Aligned_cols=66 Identities=21% Similarity=0.323 Sum_probs=45.9
Q ss_pred HHHHHHcccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccChhhHHhcCc
Q 004461 46 GLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGK 122 (752)
Q Consensus 46 ~~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~ 122 (752)
...++...+|+...+|-.++|++++.+-.. + .-...++.+.++-+.+|...+|+++|+..+...+.
T Consensus 227 ~~a~l~~~~Gls~~LGAFlaGl~l~~s~~~------~-----~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~ 292 (601)
T PRK03659 227 GSALFMDALGLSMALGTFIAGVLLAESEYR------H-----ELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLL 292 (601)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHhcCCchH------H-----HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHH
Confidence 344566778888888888899888853111 1 11234666666777778888999999998876544
No 78
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=94.49 E-value=5.9 Score=43.03 Aligned_cols=279 Identities=15% Similarity=0.152 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHHHH---HHHcccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 004461 34 ILQICLVILLTRGLA---FILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGL 110 (752)
Q Consensus 34 l~~i~lil~~~~~~~---~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gl 110 (752)
+.-.++++++.+.+. .++||+.+|..|.-=+.+.+++|.+.+.... +.=|+.. +-+.=+..+.=.+|+
T Consensus 11 l~~a~lllllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~~--~~~fd~~-------l~~~fmliFFttigl 81 (404)
T COG0786 11 LILAILLLLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGGV--SLNFDTS-------LQDVFMLIFFATIGL 81 (404)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcceE--EEeCCcc-------cccHHHHHHHHHhcc
Confidence 333445555555553 3688899998766555556666654433221 1112211 111122223446799
Q ss_pred ccChhhHHhcCchhhHHHHHHHHHHH---HHHHHHHHHhhhhhccCCchhHHHHHHH-HHHhh--ccHHHHHHHHHHccc
Q 004461 111 ELDPKSLRQTGKKALGIAIAGISLPF---ALGIGSSFLLRETISKGVDSTSFLVFMG-VALSI--TAFPVLARILAELKL 184 (752)
Q Consensus 111 e~d~~~l~~~~~~~~~i~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~l~l~-~~ls~--Ts~~vv~~iL~el~l 184 (752)
..+++.+||-+|+..........+.. +++..++.+++- ++ ...+..| +.++- -..+.-.+.+.|+|.
T Consensus 82 sa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lgi----dp---l~gllagsIsl~GGHGtaAA~~~~f~~~G~ 154 (404)
T COG0786 82 SASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLGL----DP---LIGLLAGSISLVGGHGTAAAWGPTFEDLGA 154 (404)
T ss_pred ccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcCc----cH---HHHHHhcceeecCCCchHHHHHHHHHhcCC
Confidence 99999999999987655433333222 233333333322 11 1222221 11111 112456677788874
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHH-h-cCC-----C-CC----------------hhHHHHHHHHHHHHHHHHH
Q 004461 185 LTADVGRMAMSAAAVNDVAAWILLALAVAL-S-GSG-----Q-SS----------------LVPVWVFLSGCVFVICLTL 240 (752)
Q Consensus 185 l~s~~g~l~l~~a~i~D~~~~~ll~v~~~~-~-~~~-----~-~~----------------~~~~~~~~~~v~~~~~~~~ 240 (752)
..-..++++++-+.=+.+.++-.-+.-. . ... . .+ ....-.+...+.+++++..
T Consensus 155 --~~A~~va~A~ATfGlv~GgliGgpva~~li~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~i~i~~~ 232 (404)
T COG0786 155 --EGATEVAMASATFGLVAGGLIGGPVARWLIKKNKLKPDPTKDPDDDLVDVAFEGPKSTRLITAEPLIETLAIIAICLA 232 (404)
T ss_pred --cchHHHHHHHHHHHHHHhHhcCcHHHHHHHHhcCCCCCCCCCchhhcchhhhhcccccccccHHHHHHHHHHHHHHHH
Confidence 3457777787777666655543322211 1 110 0 00 0011123344455566666
Q ss_pred HHHHHHHHHHHhcCC----------CchHHH---------HHHHHHHHHHHhhHHHHHHHhhccccchhhchhhhHHHHH
Q 004461 241 FVPPTFKWMARQCHE----------GPFANA---------LVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLA 301 (752)
Q Consensus 241 v~~~~~~~~~~~~~e----------g~~~~~---------l~~kl~~~~~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~ 301 (752)
+...+-.|+....-+ |-..+. +..+.-+.+.++-+-+|.++.=|++.+..+.+ ...++++
T Consensus 233 vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~-l~lpl~v 311 (404)
T COG0786 233 VGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELAD-LALPLLV 311 (404)
T ss_pred HHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-ccccHHH
Confidence 666666666653322 111111 22222233457788888888888999888875 3445555
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 004461 302 LVILTACLGKIVGTFVVSLSFKVPLREALA 331 (752)
Q Consensus 302 ~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~ 331 (752)
++.+-..+.-+.+.++..|.++-+...+..
T Consensus 312 iL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~ 341 (404)
T COG0786 312 ILAVQTIVMALFAIFVTFRLMGKNYDAAVL 341 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcchhHHHH
Confidence 555666666777788888888877665554
No 79
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=94.45 E-value=0.28 Score=57.07 Aligned_cols=80 Identities=16% Similarity=0.341 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHc-----ccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccCh
Q 004461 40 VILLTRGLAFILR-----PLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDP 114 (752)
Q Consensus 40 il~~~~~~~~ll~-----rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~ 114 (752)
.++++..+++++- .+++-.+.|-+++|+++|...... -+.+.++|+++|+|.+|++.-+
T Consensus 14 ~lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~~i----------------~~~v~~~gl~lFvy~vG~~~Gp 77 (562)
T TIGR03802 14 ALFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGIQI----------------DPGVKAVFFALFIFAIGYEVGP 77 (562)
T ss_pred HHHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCCCC----------------ChHHHHHHHHHHHHHhhhccCH
Confidence 3444444555544 456777889999999999643321 1236789999999999999999
Q ss_pred hhHHhcCchhhHHHHHHHHHH
Q 004461 115 KSLRQTGKKALGIAIAGISLP 135 (752)
Q Consensus 115 ~~l~~~~~~~~~i~~~~~~~~ 135 (752)
..++..+|+.+...+.++++.
T Consensus 78 ~Ff~~l~~~g~~~~~~a~~~~ 98 (562)
T TIGR03802 78 QFFASLKKDGLREIILALVFA 98 (562)
T ss_pred HHHHHHHhccHHHHHHHHHHH
Confidence 887655555555544444333
No 80
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=94.37 E-value=8.9 Score=41.31 Aligned_cols=317 Identities=19% Similarity=0.210 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCCh--hHH-HHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHh
Q 004461 33 AILQICLVILLTRGLAFILRPLRQPR--VIA-EITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVG 109 (752)
Q Consensus 33 ~l~~i~lil~~~~~~~~ll~rl~~P~--iv~-~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~G 109 (752)
...|.++.++++...++++..+++|. ..| -+++|++.+-..... ..| ..+-.+|.+.+=-.+|
T Consensus 7 ~~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~l-------~~P-------~~l~~~~q~ilG~~ig 72 (352)
T COG3180 7 IILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLTL-------PLP-------RGLFKAGQVILGIMIG 72 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccccc-------cCC-------hHHHHHHHHHHHHHHh
Confidence 46788888999999999999998864 455 666677766221111 111 4566677777777889
Q ss_pred hccChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCch
Q 004461 110 LELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADV 189 (752)
Q Consensus 110 le~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~ 189 (752)
..+..+.+... ++-+.+.+...+++...+...+|++.+.- .++. ..+++-...-..+. ...+-+|.| .+.
T Consensus 73 ~~~t~s~l~~l-~~~w~~~~~v~~~tl~~s~l~g~ll~r~~--~~~~-~Ta~~gs~PGgas~---m~~iA~d~g---Ad~ 142 (352)
T COG3180 73 ASLTPSVLDTL-KSNWPIVLVVLLLTLLSSILLGWLLKRFS--ILPG-NTAFLGSSPGGASA---MVSIAQDYG---ADL 142 (352)
T ss_pred hhcCHHHHHHH-HHcccHHHHHHHHHHHHHHHHHHHHHHhc--CCCc-chhhHhcCCchHHH---HHHHHHHhC---CCh
Confidence 99999887543 33455555666667777777777775532 2221 22333222222222 222225555 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhcCCC---CC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----Cc
Q 004461 190 GRMAMSAAAVNDVAAWILLALAV-ALSGSGQ---SS----LVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHE----GP 257 (752)
Q Consensus 190 g~l~l~~a~i~D~~~~~ll~v~~-~~~~~~~---~~----~~~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~e----g~ 257 (752)
...++.-.+ =++.++++.-++ -...+++ .. +........ .++.....++..++.+.+ |-|. +|
T Consensus 143 ~~VAl~Q~l--Rvl~Vvl~vplv~~~~~~~~a~~~~~~~i~~~~~~~~~-~~~l~~~~~~~g~l~~~l--r~Pa~~ll~~ 217 (352)
T COG3180 143 RLVALMQYL--RVLFVVLLAPLVSRLFVGDGANGSGTPEIWLPPVDWLI-LLLLILAALLGGLLGKLL--RFPAPTLLGP 217 (352)
T ss_pred hHHHHHHHH--HHHHHHHHHHHHHHHhcCCCCCCCCCccccCchhhHHH-HHHHHHHHHHHHHHHHHH--cCCcHHHHHH
Confidence 444333322 111222221111 1111111 11 100000110 111112222222222222 1232 12
Q ss_pred hH-HHHHH-----HHH--HHHHHhhHHHHHHHhhccccchhhchhh-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 004461 258 FA-NALVE-----KVE--DLVSGIFLPLYFVSSGLKTNIATIQGLQ-SWGLLALVILTACLGKIVGTFVVSLSFKVPLRE 328 (752)
Q Consensus 258 ~~-~~l~~-----kl~--~~~~~~~~piFFv~~Gl~~d~~~l~~~~-~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~ 328 (752)
+. ....+ +++ .-...+-.-+.=..+|.++|-..+.... .....++.++..++.-....++..++.+.++.+
T Consensus 218 l~l~a~v~~~~~~~~~lP~wl~~va~~~iG~~IG~~f~~~~l~~~~r~~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~t 297 (352)
T COG3180 218 LLLGAIVHFGGGITIQLPAWLLAVAQALIGALIGSRFDRSILREAKRLLPAILVSIIALMAIAAGMAGLLSWLTGIDLNT 297 (352)
T ss_pred HHHHHHhhcccceeeeCCHHHHHHHHHHHHHHHcccccHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 10 00000 000 0001122223346788999977665322 222334555555556666777778888888866
Q ss_pred HHHHHHHhhhhHHHHHHHHHhhhccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 004461 329 ALALGILMNTKGLVELIVLNIGKDRK---VLNDQVFAIMILMAVVTTFMTTPLVMAVYKPA 386 (752)
Q Consensus 329 ~~~lgl~l~~rG~v~l~l~~~~~~~~---~i~~~~~~~lv~~~lv~t~i~~pl~~~l~~~~ 386 (752)
+. ++ .+|-|.-++.....+.+.. +.+-|..-.+ +...+.|++.|++.+++
T Consensus 298 a~-La--~sPGGl~~ma~~A~~l~ad~a~V~a~q~lRll-----~il~i~p~l~r~l~~~~ 350 (352)
T COG3180 298 AY-LA--TSPGGLDTMAAIAAALGADPAFVMALQVLRLL-----FILLLGPALARFLSKRA 350 (352)
T ss_pred HH-HH--cCCCcHHHHHHHHHHcCCChHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHc
Confidence 54 33 5888888887776665532 1122333333 22333466666665443
No 81
>TIGR00930 2a30 K-Cl cotransporter.
Probab=94.35 E-value=19 Score=44.89 Aligned_cols=131 Identities=8% Similarity=0.145 Sum_probs=77.9
Q ss_pred CCcceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHH
Q 004461 405 KAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVA 484 (752)
Q Consensus 405 ~~e~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 484 (752)
+-..++|+.+.+++..+.+++++..+.+ +.+. ..+.|+++.+.... . ++.++..+.
T Consensus 573 nwrPqiLvl~~~p~~~~~Ll~f~~~l~~---~~gl-~i~~~v~~~~~~~~-~-------------------~~~~~~~~~ 628 (953)
T TIGR00930 573 NWRPQCLVLTGPPVCRPALLDFASQFTK---GKGL-MICGSVIQGPRLEC-V-------------------KEAQAAEAK 628 (953)
T ss_pred ccCCeEEEEeCCCcCcHHHHHHHHHhcc---CCcE-EEEEEEecCchhhh-H-------------------HHHHHHHHH
Confidence 3447899999999999999999999993 3454 45668886432111 0 011222233
Q ss_pred HHHhhhccceEEEEeEEecCCCChHHHHHHHHHh-----cCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCc
Q 004461 485 FEAFQQLSRVSVRPMTAISSMSDMHEDICTTAES-----KRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCS 559 (752)
Q Consensus 485 ~~~~~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e-----~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~ 559 (752)
.+++.++.+++--..+..+ .++.+++..+..- .+.+.++|||...|..++.. ....+-.+.+... .+...
T Consensus 629 ~~~~~~~~~~~~f~~~~~~--~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~--~~~~y~~~i~~a~-~~~~~ 703 (953)
T TIGR00930 629 IQTWLEKNKVKAFYAVVVA--DDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAEPR--AWETYIGIIHDAF-DAHLA 703 (953)
T ss_pred HHHHHHHhCCCeEEEEecC--CCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhccch--hHHHHHHHHHHHH-HcCCc
Confidence 3334444444443334444 5899999888876 56899999998877643311 1112333444433 44555
Q ss_pred eEEEe
Q 004461 560 VGILI 564 (752)
Q Consensus 560 V~Ilv 564 (752)
|.|+.
T Consensus 704 v~i~r 708 (953)
T TIGR00930 704 VVVVR 708 (953)
T ss_pred EEEEc
Confidence 55543
No 82
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=94.10 E-value=11 Score=41.40 Aligned_cols=276 Identities=16% Similarity=0.187 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHH---HHHcccCCChhH-HHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHh
Q 004461 34 ILQICLVILLTRGLA---FILRPLRQPRVI-AEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVG 109 (752)
Q Consensus 34 l~~i~lil~~~~~~~---~ll~rl~~P~iv-~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~G 109 (752)
+.-.+++++++..+. .+++|+-+|..+ |-++ |.++.+ .++.... .+.-|. ..+.+.-++.+.=.+|
T Consensus 9 l~la~ilLliG~~Lr~ki~~lqk~~IPasvIgGli-~~il~~-~l~~~~~-~~~~f~-------~~l~~~lm~~fF~~ig 78 (368)
T PF03616_consen 9 LALASILLLIGKFLRAKIPFLQKLFIPASVIGGLI-FAILPL-ILGGFGG-ISISFD-------TSLQDFLMIIFFTTIG 78 (368)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHccCCchHHHHHH-HHHHHH-HHHhcCc-eEEEec-------hhHHHHHHHHHHHHHh
Confidence 344455566666654 468888898643 3333 333332 1111110 011111 1133333333444678
Q ss_pred hccChhhHHhcCchhhHHHHHHHH---HHHHHHHHHHHHhhhhhccCCchhHHHHHHHH-HH--hhccHHHHHHHHHHc-
Q 004461 110 LELDPKSLRQTGKKALGIAIAGIS---LPFALGIGSSFLLRETISKGVDSTSFLVFMGV-AL--SITAFPVLARILAEL- 182 (752)
Q Consensus 110 le~d~~~l~~~~~~~~~i~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~-~l--s~Ts~~vv~~iL~el- 182 (752)
+..+++.+||.+|+.......... +..++|..++.+++. ++ ...+..+. .+ .--..+...+.++|+
T Consensus 79 L~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl----~p---~~Gll~Gsi~f~GGhGTAaa~g~~fe~~~ 151 (368)
T PF03616_consen 79 LGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGL----DP---LFGLLAGSIGFTGGHGTAAAFGPTFEELY 151 (368)
T ss_pred hccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----Cc---hHHHHhccccccCCccHHHHHHHHHHHhc
Confidence 899999999988877655444332 334455555444432 11 12222221 11 111224556777777
Q ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHHHHH-hc-CC---CC---------------C----hhHHHHHHHHHHHHHHH
Q 004461 183 KLLTADVGRMAMSAAAVNDVAAWILLALAVAL-SG-SG---QS---------------S----LVPVWVFLSGCVFVICL 238 (752)
Q Consensus 183 ~ll~s~~g~l~l~~a~i~D~~~~~ll~v~~~~-~~-~~---~~---------------~----~~~~~~~~~~v~~~~~~ 238 (752)
+. ..-..+++++|-+.=+.+.++=..+... .. .. .. + ......++..+.++.++
T Consensus 152 G~--~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~i~~l~~i~i~ 229 (368)
T PF03616_consen 152 GW--EGATSVGMAAATFGLVVGGLIGGPIANWLIRKGKLKPKKEPDELKEYLRKGEERPSAGRPITSSSLIEHLALILIA 229 (368)
T ss_pred Ch--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccccccccccccccccccccCCCHHHHHHHHHHHHHH
Confidence 75 3345666677666655544443222222 11 10 00 0 00011122222222333
Q ss_pred HHHHHHHHHHHHHhc---CC--------------------CchHHHHHHHHHHHHHHhhHHHHHHHhhccccchhhchhh
Q 004461 239 TLFVPPTFKWMARQC---HE--------------------GPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQ 295 (752)
Q Consensus 239 ~~v~~~~~~~~~~~~---~e--------------------g~~~~~l~~kl~~~~~~~~~piFFv~~Gl~~d~~~l~~~~ 295 (752)
..+...+..|+.... |. ....+...+++ .++.+-+|.+..=+.+++..+.+ .
T Consensus 230 ~~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I----~~~sL~~fl~~almsl~l~~l~~-~ 304 (368)
T PF03616_consen 230 IGLGYIISALLKKIGLTLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRI----SGISLDLFLAMALMSLKLWVLAD-Y 304 (368)
T ss_pred HHHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHH----HHHHHHHHHHHHHHhccHHHHHH-H
Confidence 333333333443321 22 11222333333 45566666677777888888875 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 004461 296 SWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGI 334 (752)
Q Consensus 296 ~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl 334 (752)
..++++++++-.++.=+...++..+.++-++ |+..++.
T Consensus 305 a~Plliil~~q~i~~~~f~~fv~fr~~gkdy-daavm~~ 342 (368)
T PF03616_consen 305 ALPLLIILAVQTILMVLFAYFVTFRVMGKDY-DAAVMSA 342 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhCCCh-hHHHHhh
Confidence 4444444444444455566677777887775 6666544
No 83
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=93.90 E-value=4.3 Score=43.75 Aligned_cols=238 Identities=14% Similarity=0.185 Sum_probs=130.9
Q ss_pred hccChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHH-----hhccHHHHHHHHH-Hcc
Q 004461 110 LELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVAL-----SITAFPVLARILA-ELK 183 (752)
Q Consensus 110 le~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~l-----s~Ts~~vv~~iL~-el~ 183 (752)
+.||.+.+.|...|-+...+.+.+..++++.+++.+++..+.. ..+++..-. ..-+.|. +.+-+ -++
T Consensus 40 L~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~------~~~~i~lPIm~GG~GaGavPL-S~~Y~~~~g 112 (347)
T TIGR00783 40 LGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFGLGFDH------SLMYIVMPIMAGGVGAGIVPL-SIIYSAITG 112 (347)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhH------hhheeeehhcCCCcccchhhH-HHHHHHHhC
Confidence 4899999999988888888888888888888888887654311 111111111 1111121 11111 123
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCC--------C-----h--h---HHHHHHHHHHHHHHHH
Q 004461 184 LLTADVGRMAMSAAAVNDVAAWILLALAVALSGS------GQS--------S-----L--V---PVWVFLSGCVFVICLT 239 (752)
Q Consensus 184 ll~s~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~------~~~--------~-----~--~---~~~~~~~~v~~~~~~~ 239 (752)
...++.-..++.+.++.++++++.-+++.-+... ++. . . . ... ....-++..+.+
T Consensus 113 ~~~~~~~s~~ip~~~igni~AIi~agll~~lG~~~p~ltG~G~L~~~~~~~~~~~~~~~~~~~~~~~-~~g~Gl~~a~~~ 191 (347)
T TIGR00783 113 RSSEEIFSQLIPAVIIGNIFAIICAGLLSRIGKKRPKLNGHGELVRSEKREDAEKAKEITEIKIDVK-LMGSGVLFAVAL 191 (347)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCCceEeecCCcchhhhccccccCCCCHH-HHHHHHHHHHHH
Confidence 3344555566678888888888877766444211 000 0 0 0 111 111112233333
Q ss_pred HHHHHHHHHHH---------------HhcCCCchHHHHHHHHHH---HHHHhhHHHHHHHhhcc-ccchhhchhhhHHHH
Q 004461 240 LFVPPTFKWMA---------------RQCHEGPFANALVEKVED---LVSGIFLPLYFVSSGLK-TNIATIQGLQSWGLL 300 (752)
Q Consensus 240 ~v~~~~~~~~~---------------~~~~eg~~~~~l~~kl~~---~~~~~~~piFFv~~Gl~-~d~~~l~~~~~~~~~ 300 (752)
|.+.-+...+. +.. +-..+.++++... |...-+.+..++.+|+. +|+.++.+..++. .
T Consensus 192 y~~g~l~~~~~~Ih~~v~mII~~vi~k~~--gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~-~ 268 (347)
T TIGR00783 192 FMAGGLLKSFPGIPAYAFMILIAAALKAF--GLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQ-F 268 (347)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchh-H
Confidence 44333322111 111 2233455555443 33333444455566776 7888776533343 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HHHHhhhh-HHHHHHHHHhhhccCCCCH
Q 004461 301 ALVILTACLGKIVGTFVVSLSFKVPLREALA-LGILMNTK-GLVELIVLNIGKDRKVLND 358 (752)
Q Consensus 301 ~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~-lgl~l~~r-G~v~l~l~~~~~~~~~i~~ 358 (752)
+++++..+++=.+++++.+++.|+-+-|+.. -|+.++.+ |.=|+++.+.+...+++.-
T Consensus 269 vviiv~~Vlg~ii~s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmpf 328 (347)
T TIGR00783 269 VVICLSVVVAMILGGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIPF 328 (347)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhcccccH
Confidence 5566667778888999999999987766555 56566554 4567777777776676653
No 84
>PRK04972 putative transporter; Provisional
Probab=93.78 E-value=0.43 Score=55.45 Aligned_cols=119 Identities=25% Similarity=0.370 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHH-HcccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccChh
Q 004461 37 ICLVILLTRGLAFI-LRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPK 115 (752)
Q Consensus 37 i~lil~~~~~~~~l-l~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~ 115 (752)
+++.+.+..+++.+ ++.+++-...|-+++|+++|...... | ..+.++|+.+|+|.+|++.-+.
T Consensus 17 lf~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~~~---------~-------~~~~~~gl~lF~~~vG~~~Gp~ 80 (558)
T PRK04972 17 LFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFSI---------N-------TDALNLGFMLFIFCVGVEAGPN 80 (558)
T ss_pred HHHHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCCCC---------C-------hHHHHHHHHHHHHHHhhhhhHH
Confidence 34444444444443 45567777889999999999643221 1 1245899999999999999987
Q ss_pred hH---HhcCchhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHH-HHhhccHHHHHHHHH
Q 004461 116 SL---RQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV-ALSITAFPVLARILA 180 (752)
Q Consensus 116 ~l---~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~-~ls~Ts~~vv~~iL~ 180 (752)
.+ |+.+.+...+++.-.++++++++.++++++. ++ ....|+ +-+.|++|.+.....
T Consensus 81 F~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~~~~G~~aGa~T~tp~l~~a~~ 140 (558)
T PRK04972 81 FFSIFFRDGKNYLMLALVMVGSALVIALGLGKLFGW----DI-----GLTAGMLAGSMTSTPVLVGAGD 140 (558)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC----CH-----HHHHHHhhccccCcHHHHHHHH
Confidence 65 4445555556665555665555555544322 11 233333 346677777766544
No 85
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=93.53 E-value=0.43 Score=45.47 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=64.7
Q ss_pred CCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccChhhHHhcCch----hhHHHHH
Q 004461 55 RQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKK----ALGIAIA 130 (752)
Q Consensus 55 ~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~----~~~i~~~ 130 (752)
++-..-|-+++|+++|-. +...+..-. . +......+.++|+.+|++.+|++--++.+....+. ...++..
T Consensus 20 ~LG~~~G~L~vgL~~G~~--~~~~p~~~~-~---p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~ 93 (154)
T TIGR01625 20 KLGNAGGVLFVGLLLGHF--GATGPLTWY-I---PFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGAL 93 (154)
T ss_pred EecccHHHHHHHHHHHhc--cccCCccee-c---ChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHH
Confidence 333478999999999953 332221110 1 23457789999999999999999988765433332 2223333
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHH-HHhhccHHHHHHHHHHcc
Q 004461 131 GISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV-ALSITAFPVLARILAELK 183 (752)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~-~ls~Ts~~vv~~iL~el~ 183 (752)
-.++|.+++..+.. +.+ +.+ .....|+ +-+.|++|.+....+..+
T Consensus 94 v~~~~~~~~~~~~~---~~~--~~~---~~~~~G~~aGa~T~tpaL~aa~~~~~ 139 (154)
T TIGR01625 94 ITVVPTLLVAVALI---KLL--RIN---YALTAGMLAGATTNTPALDAANDTLR 139 (154)
T ss_pred HHHHHHHHHHHHHH---HHh--CCC---HHHHHHHHhccccChHHHHHHHHHhc
Confidence 33334333333332 222 111 1333443 457788888877765443
No 86
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=93.43 E-value=2.3 Score=49.70 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=34.0
Q ss_pred cccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccChhhHHhc
Q 004461 52 RPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQT 120 (752)
Q Consensus 52 ~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~ 120 (752)
..+|+..++|-.++|++++.+-++ +. ..+....+..+-+-+|....|+++|+..+.+.
T Consensus 244 ~~lGls~~lGAflaGl~l~~~~~~------~~-----~~~~~~~~~~~f~plFFv~~G~~~d~~~l~~~ 301 (558)
T PRK10669 244 ELFDVSFALGAFFAGMVLNESELS------HR-----AAHDTLPLRDAFAVLFFVSVGMLFDPMILIQQ 301 (558)
T ss_pred HHcCccHHHHHHHHHHHHhCChhH------HH-----HHHHHhhHHHHHHHHHHHHhhhhcCHHHHHHH
Confidence 566777777777777777632111 00 01112223344455677788999999988754
No 87
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=92.42 E-value=4.7 Score=49.38 Aligned_cols=43 Identities=5% Similarity=0.159 Sum_probs=35.5
Q ss_pred CCCcceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeec
Q 004461 404 SKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMEL 449 (752)
Q Consensus 404 ~~~e~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel 449 (752)
.+...||.++.-|-++-+.++.++..++ +...+++.++|.+..
T Consensus 627 ~~~~~~v~~~F~GG~DDREALa~a~rma---~~p~v~lTVirf~~~ 669 (832)
T PLN03159 627 NQVSHHVAVLFFGGPDDREALAYAWRMS---EHPGITLTVMRFIPG 669 (832)
T ss_pred cccceeEEEEecCCcchHHHHHHHHHHh---cCCCeEEEEEEEEcc
Confidence 3446799999977788899999999999 447889999999854
No 88
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=92.33 E-value=21 Score=39.58 Aligned_cols=103 Identities=27% Similarity=0.349 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHH---HHHcccCCChhH-HHHHH--HHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHH
Q 004461 32 LAILQICLVILLTRGLA---FILRPLRQPRVI-AEITG--GILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFM 105 (752)
Q Consensus 32 ~~l~~i~lil~~~~~~~---~ll~rl~~P~iv-~~Ila--GiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~ll 105 (752)
..+.-.++++++++.+. .+++|+.+|..+ |-+++ +..++|..++.. .-|+. .+.+.=+.++.
T Consensus 7 ~t~~la~~lLllG~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~~~~~~~~-----~~fd~-------~l~~~lm~~fF 74 (398)
T TIGR00210 7 ATLVVAILVLLLGRYLVKKIKFLKSFNIPEPVVGGVLVALALLLIYKIFGTE-----VNFDF-------SLRDPLMLIFF 74 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhccEE-----EEcCh-------hHHHHHHHHHH
Confidence 33444555566666553 358889998654 44443 455577665532 11221 12233344455
Q ss_pred HHHhhccChhhHHhcCchhhHHHHH---HHHHHHHHHHHHHHHh
Q 004461 106 FLVGLELDPKSLRQTGKKALGIAIA---GISLPFALGIGSSFLL 146 (752)
Q Consensus 106 F~~Gle~d~~~l~~~~~~~~~i~~~---~~~~~~~~~~~~~~~l 146 (752)
=.+|+..+.+.+||-+|+.+..... -....-++|..++..+
T Consensus 75 atigLga~~~~l~~gg~~l~~~~~~~~~l~~~Qn~vGv~la~~~ 118 (398)
T TIGR00210 75 TTIGLSANFKSLLKGGKPLLIFLATAVGFLVIQNAVGIGMASLL 118 (398)
T ss_pred HHhhhcCChHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5678889999999988888655555 3333445555555443
No 89
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=92.04 E-value=1.3 Score=51.66 Aligned_cols=116 Identities=22% Similarity=0.321 Sum_probs=73.4
Q ss_pred ccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccChhhH---HhcCchhhHHHH
Q 004461 53 PLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSL---RQTGKKALGIAI 129 (752)
Q Consensus 53 rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l---~~~~~~~~~i~~ 129 (752)
++.+-...|-+++|+++|- ++...+.... . +......+.++|+.+|++.+|++--++.+ ++.+.+...+++
T Consensus 412 p~~lg~~~g~l~~gl~~g~--~~~~~~~~~~-~---p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~ 485 (562)
T TIGR03802 412 PLTLGTGGGALISGLVFGW--LRSKHPTFGN-I---PSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGI 485 (562)
T ss_pred ceeehhhHHHHHHHHHHHH--hcccCCccee-c---CHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHH
Confidence 4555667789999999985 3322211000 1 23456779999999999999999888654 555566666666
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHH-HHHhhccHHHHHHHHHHc
Q 004461 130 AGISLPFALGIGSSFLLRETISKGVDSTSFLVFMG-VALSITAFPVLARILAEL 182 (752)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~-~~ls~Ts~~vv~~iL~el 182 (752)
.-.++|.++++.+++.+.+ . .....+| ++-+.|++|.+.......
T Consensus 486 ~~~~~~~~~~~~~~~~~~~-----~---~~~~~~G~~aG~~t~t~~l~~a~~~~ 531 (562)
T TIGR03802 486 VVTILPLIITMLIGKYVLK-----Y---DPALLLGALAGARTATPALGAVLERA 531 (562)
T ss_pred HHHHHHHHHHHHHHHHHhC-----C---CHHHHHHHhhccCCCcHHHHHHHHhc
Confidence 6666666666666633321 1 1234444 445778888887775544
No 90
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=91.86 E-value=2 Score=41.13 Aligned_cols=97 Identities=20% Similarity=0.234 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHcccCCC--hhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccChhhH
Q 004461 40 VILLTRGLAFILRPLRQP--RVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSL 117 (752)
Q Consensus 40 il~~~~~~~~ll~rl~~P--~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l 117 (752)
.++++.+.+++++++|+| ..+|-++++.++.- .+..+ ...-..+.+++.+++-..+|.+++.+.+
T Consensus 3 ~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~--~~~~~-----------~~~P~~~~~~~qviiG~~iG~~f~~~~l 69 (156)
T TIGR03082 3 LLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSL--AGGLE-----------ITLPPWLLALAQVVIGILIGSRFTREVL 69 (156)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHh--cCCcc-----------CCCCHHHHHHHHHHHHHHHHccCCHHHH
Confidence 456677888999999998 56666666665552 12111 1112356777888888899999999999
Q ss_pred HhcCchhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 004461 118 RQTGKKALGIAIAGISLPFALGIGSSFLLRETI 150 (752)
Q Consensus 118 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~ 150 (752)
++..+. +...+...++.++.+.+.++++.+..
T Consensus 70 ~~~~~~-~~~~l~~~~~~l~~~~~~~~~l~~~~ 101 (156)
T TIGR03082 70 AELKRL-WPAALLSTVLLLALSALLAWLLARLT 101 (156)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876654 44455556666666777777776543
No 91
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=91.74 E-value=1.7 Score=46.90 Aligned_cols=103 Identities=18% Similarity=0.245 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHcc-----------cCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHH
Q 004461 34 ILQICLVILLTRGLAFILRP-----------LRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLI 102 (752)
Q Consensus 34 l~~i~lil~~~~~~~~ll~r-----------l~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~ 102 (752)
+.+...+..+..+++++.+| .++|.++---++=.+++-. + .+|+.....++.++++-+.
T Consensus 218 l~Rvl~L~pv~~~la~~~~~~~~~~~~~~~~~~~P~FvlgFl~~~~l~S~--~--------~lp~~~~~~l~~~~~~ll~ 287 (335)
T TIGR00698 218 MLRVMMLAPFLLILSIIYSRSDGISENESSKITIPWFAVLFIGVAIFNSF--D--------LLPGEVVQALVPLDTFLLA 287 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccCCCCCChHHHHHHHHHHHHHh--h--------hCcHHHHHHHHHHHHHHHH
Confidence 34444444445555554432 3456655444443444321 1 2344456678899999999
Q ss_pred HHHHHHhhccChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHh
Q 004461 103 FFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLL 146 (752)
Q Consensus 103 ~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l 146 (752)
+=|+.+|+++|++.+|+.+.|.+..++...+.-.+.+..+.+++
T Consensus 288 ~AmaaiGl~t~~~~l~~~G~kp~~~g~i~~~~l~~~~~~l~~~~ 331 (335)
T TIGR00698 288 TAMAALGLTTNVSAVKKAGVKPLFASYAGYLWLVGGGFVLNYLI 331 (335)
T ss_pred HHHHHHhhcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887765555555544443
No 92
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=91.23 E-value=0.57 Score=55.00 Aligned_cols=127 Identities=15% Similarity=0.071 Sum_probs=80.8
Q ss_pred cceEEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhcCCCCCeEEE
Q 004461 579 VSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYE 658 (752)
Q Consensus 579 ~~~~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~v~~~ 658 (752)
...||+|...++|..+..++.|.|+|.+.++++|++++..++... ..+.+++.-++.+ ++.+++... ..
T Consensus 247 ~~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~------~~~~~~~~l~~~~-~Lae~lGae----~~ 315 (890)
T COG2205 247 ARERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHR------LSEKEARRLHENL-RLAEELGAE----IV 315 (890)
T ss_pred ccceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEecccccc------ccHHHHHHHHHHH-HHHHHhCCe----EE
Confidence 346999999999999999999999999999999999999876653 1222222222221 233333221 11
Q ss_pred EEEecChHHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccccchhhhccCCCCceeEEEEE
Q 004461 659 ERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQ 725 (752)
Q Consensus 659 e~~v~~g~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvvq 725 (752)
...-.|-++++....+..+..-||+|+++ . +.|-+. -.|.+.|.|++.--. ..|-+|-
T Consensus 316 ~l~~~dv~~~i~~ya~~~~~TkiViG~~~----~---~rw~~~-~~~~l~~~L~~~~~~-idv~ii~ 373 (890)
T COG2205 316 TLYGGDVAKAIARYAREHNATKIVIGRSR----R---SRWRRL-FKGSLADRLAREAPG-IDVHIVA 373 (890)
T ss_pred EEeCCcHHHHHHHHHHHcCCeeEEeCCCc----c---hHHHHH-hcccHHHHHHhcCCC-ceEEEee
Confidence 22224444455444554559999999997 1 145322 129999999985432 4555554
No 93
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=91.02 E-value=9 Score=42.65 Aligned_cols=100 Identities=21% Similarity=0.256 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHH-HHHHHHHHHHhhccChhh
Q 004461 38 CLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLAN-LGLIFFMFLVGLELDPKS 116 (752)
Q Consensus 38 ~lil~~~~~~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~-lgl~~llF~~Gle~d~~~ 116 (752)
..++.+.....++.+.+|++.++|--++|+++.-+-... .+-.+.++.+++ +=+-+|...+|+++|++.
T Consensus 225 ~~~l~i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~~----------~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~ 294 (397)
T COG0475 225 LFVLLLVLGAAYLAELLGLSMILGAFLAGLLLSESEYRK----------HELEEKIEPFGDGLFIPLFFISVGMSLDLGV 294 (397)
T ss_pred HHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcccccch----------HHHHHHHHhHHhHHHHHHHHHHhhHHcCHHH
Confidence 444455556778888999999999999999998643321 123456777777 777778889999999999
Q ss_pred HHhcCchhhHHHHHHHHHHHHHHHHHHHHhh
Q 004461 117 LRQTGKKALGIAIAGISLPFALGIGSSFLLR 147 (752)
Q Consensus 117 l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 147 (752)
+..+...++.+....++.=+...+..++.++
T Consensus 295 l~~~~~~~l~~~~~~i~~K~~~~~~~~~~~g 325 (397)
T COG0475 295 LLENLLLILLLVALAILGKILGAYLAARLLG 325 (397)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9887766444443333333444444444443
No 94
>COG2985 Predicted permease [General function prediction only]
Probab=90.87 E-value=1.5 Score=48.61 Aligned_cols=118 Identities=25% Similarity=0.403 Sum_probs=66.7
Q ss_pred HHHHHHHHcccC-CC-----hhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccChhh-
Q 004461 44 TRGLAFILRPLR-QP-----RVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKS- 116 (752)
Q Consensus 44 ~~~~~~ll~rl~-~P-----~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~- 116 (752)
...++..+-|+| .- -..+-++.|.+++.+.+.... +.+.+ ++|+++|.+.+|+|--+..
T Consensus 16 vl~lgl~~gkIr~fG~gigg~l~g~L~Vgl~l~~~~~~i~~------------~~l~f--~lGL~LFVy~iGl~aGP~FF 81 (544)
T COG2985 16 VLALGLGFGKIRGFGLGIGGVLFGVLFVGLFLGQYGFTINT------------DMLHF--ELGLILFVYTIGLEAGPGFF 81 (544)
T ss_pred HHHHHhhhceeEEeccccccchhhHhHHHHHhccccccccc------------chhhh--hhhhhHhhhhhhheecccHh
Confidence 334455566665 22 234455555555554443322 22233 9999999999999998864
Q ss_pred --HHhcCchhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHH-HHhhccHHHHH---HHHHHccc
Q 004461 117 --LRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV-ALSITAFPVLA---RILAELKL 184 (752)
Q Consensus 117 --l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~-~ls~Ts~~vv~---~iL~el~l 184 (752)
+|+.+++-..+++.- ++.+..+++.+...+ +++ ..+..|. +-+.||+|... .+|+|++.
T Consensus 82 ss~~~~Gl~~~~~alli----vi~~~~~a~~l~k~~--~~~---~~~~~Gm~sGAlTsTP~L~aa~~~L~~lg~ 146 (544)
T COG2985 82 SSFRKSGLNLNAFALLI----VIAALLLAWVLHKLF--GID---LGLIAGMFSGALTSTPGLGAAQDILRELGA 146 (544)
T ss_pred HHHHHhhhHHHHHHHHH----HHHHHHHHHHHHhhc--CCC---HHHhhhhhcccccCCchhHHHHHHHHhhcc
Confidence 577777776666544 344455556665554 232 1233332 23556666554 45777664
No 95
>COG2855 Predicted membrane protein [Function unknown]
Probab=90.57 E-value=27 Score=37.39 Aligned_cols=103 Identities=19% Similarity=0.200 Sum_probs=66.3
Q ss_pred HHcccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccChhhHHhcCchhhHHHH
Q 004461 50 ILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAI 129 (752)
Q Consensus 50 ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~ 129 (752)
.....+.|..+--|+.||++|... .... ... ..-...-..+=++|.++ .|.+++++.+...+.+.+.+-.
T Consensus 31 ~~~~~~l~al~lAIllGi~l~~l~--~~~~---~~~-~GI~fs~k~LLr~gIvL----lG~~ltl~~i~~~G~~~v~~~~ 100 (334)
T COG2855 31 FSIHLGLSALTLAILLGILLGILP--QIPA---QTS-AGITFSSKKLLRLGIVL----LGFRLTLSDIADVGGSGVLIIA 100 (334)
T ss_pred HhhhcCchHHHHHHHHHHHHhccc--cchh---hhc-cchhhhHHHHHHHHHHH----HcceeeHHHHHHcCccHHHHHH
Confidence 345568999999999999999322 1111 000 11112234555666664 5899999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHhh
Q 004461 130 AGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSI 169 (752)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~ 169 (752)
.....++++++.++.+++. ++ ..++++|+--|+
T Consensus 101 ~~l~~t~~~~~~lg~~lgl----d~---~~a~Lia~GssI 133 (334)
T COG2855 101 ITLSSTFLFAYFLGKLLGL----DK---KLALLIAAGSSI 133 (334)
T ss_pred HHHHHHHHHHHHHHHHhCC----CH---HHHHHHHccchh
Confidence 7777777777766665542 33 345555544433
No 96
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=90.19 E-value=1 Score=48.10 Aligned_cols=132 Identities=16% Similarity=0.196 Sum_probs=82.3
Q ss_pred HHHhhHHHHHHHhhccccchhhchhhhHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHH
Q 004461 270 VSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALV-ILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLN 348 (752)
Q Consensus 270 ~~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~-~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~l~~ 348 (752)
.++++=|+-|..+|..+|++-+... .+. .++ -..+-++-+ .+++.+..++++.+|+-.+|.+=+.-|-.++.+.+
T Consensus 103 ~~gl~P~LIFlGIGAMtDFgpllan-P~~--~ll~gaaAQ~GiF-~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s~ 178 (399)
T TIGR03136 103 SNSLVACILFFGIGAMSDISFILAR-PWA--SITVALFAEMGTF-ATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFASL 178 (399)
T ss_pred hcccHHHHHHHhccHHhcchHHHhC-hHH--HHHHHHHHHhhHH-HHHHHHHHcCCCHHHhhHHhhcccCCccHHHHHHH
Confidence 3678889999999999999977642 221 122 233444433 35566677899999999999988888887777765
Q ss_pred hhhc--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhccccccccccCCCCCcceEEEEe
Q 004461 349 IGKD--RKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACF 414 (752)
Q Consensus 349 ~~~~--~~~i~~~~~~~lv~~~lv~t~i~~pl~~~l~~~~~~~~~~~~~~~~i~~~~~~~e~rILv~v 414 (752)
..-. .+.|.-..|+-| ++ .-.+-||++|.+-.+++|..+-.|+.|++ .+..||+.|+
T Consensus 179 kLAp~Llg~IaVAAYsYM---aL-VPiiqPpimklLttkkER~I~M~~~~r~V-----Sk~eKilFpi 237 (399)
T TIGR03136 179 ILAKDLFVPISIIAYLYL---SL-TYAGYPYLIKLLVPKKYRGLEVEMEFPDV-----SQRAKFVFTI 237 (399)
T ss_pred hhhhHhHHHHHHHHHHHH---HH-HhcccchHHHhhcCHHHHcccCccCCCCC-----CccchhHHHH
Confidence 4321 133333444433 32 35677899998876655554112244432 2344676654
No 97
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=89.30 E-value=17 Score=40.07 Aligned_cols=116 Identities=9% Similarity=0.101 Sum_probs=66.7
Q ss_pred HHhhHHHHHHHhhccccchhhchhh-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH-HHhh-hhHHHHHHHH
Q 004461 271 SGIFLPLYFVSSGLKTNIATIQGLQ-SWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALG-ILMN-TKGLVELIVL 347 (752)
Q Consensus 271 ~~~~~piFFv~~Gl~~d~~~l~~~~-~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg-l~l~-~rG~v~l~l~ 347 (752)
.++|+-+||..+|+..++..+.... .......+.....+...+.....+.+++.++.-.+..| ..+. -.| .+.++.
T Consensus 66 ~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhG-TAaa~g 144 (368)
T PF03616_consen 66 QDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFTGGHG-TAAAFG 144 (368)
T ss_pred HHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhccccccCCcc-HHHHHH
Confidence 4667778999999999988775432 12222233333344566655666677788777666543 2222 222 344555
Q ss_pred Hhhhcc-CCCCHHHHHH--HHHHHHHHHHHHHHHHHHHhchhh
Q 004461 348 NIGKDR-KVLNDQVFAI--MILMAVVTTFMTTPLVMAVYKPAR 387 (752)
Q Consensus 348 ~~~~~~-~~i~~~~~~~--lv~~~lv~t~i~~pl~~~l~~~~~ 387 (752)
....+. |+-+.....+ -.+..+...++..|+.+|+.|+.+
T Consensus 145 ~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~~ 187 (368)
T PF03616_consen 145 PTFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWLIRKGK 187 (368)
T ss_pred HHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 566565 6554433322 223333445667899999887654
No 98
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=89.12 E-value=4.9 Score=44.58 Aligned_cols=167 Identities=12% Similarity=0.100 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHHHHcc--cCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q 004461 35 LQICLVILLTRGLAFILRP--LRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLEL 112 (752)
Q Consensus 35 ~~i~lil~~~~~~~~ll~r--l~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~ 112 (752)
..+.+.+.++..+...++. +.+|..++.+++|+++.... ... +. . .-..+.++.++++.+-+++-.+=..+
T Consensus 222 ~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~-~~~----~~-~-~~~~~~i~~I~~~sLdlfl~~AlmsL 294 (398)
T TIGR00210 222 ALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPL-SFK----KF-P-WVAERAVSVIGNVSLSLFLAIALMSL 294 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHH-HHh----Cc-c-ccchHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455555566666666664 67999999999999998531 111 10 0 11334899999999999998888899
Q ss_pred ChhhHHhcCchhhHHHHHHHHHHHHHHH-HHHHHhhhhhccCCchhHHHHHHHHHHhhccHHH--HHHHHHHccccCCch
Q 004461 113 DPKSLRQTGKKALGIAIAGISLPFALGI-GSSFLLRETISKGVDSTSFLVFMGVALSITAFPV--LARILAELKLLTADV 189 (752)
Q Consensus 113 d~~~l~~~~~~~~~i~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~v--v~~iL~el~ll~s~~ 189 (752)
++..+....-..+.+.+.+.++..+... .....+++.++.. ...+-.+|..+..|+.++ .-.+-++.|-.+...
T Consensus 295 ~L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg~~ydaa---V~~ag~~G~~lGatptaianm~av~~~yg~s~~af 371 (398)
T TIGR00210 295 QLWELADLAGPIALILLVQVMFMALYAIFVTFRLMGKDYDAA---VLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAF 371 (398)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccchHHHH---HHhcccccccccchHHHHHHHHHHHhccCCCCcce
Confidence 9999999999999999999988875544 3333343332100 012234555554444332 233444455434433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004461 190 GRMAMSAAAVNDVAAWILLALA 211 (752)
Q Consensus 190 g~l~l~~a~i~D~~~~~ll~v~ 211 (752)
=-.=+-.+.+-|+...++....
T Consensus 372 ~ivPlvgaf~id~~n~~~i~~f 393 (398)
T TIGR00210 372 IVVPLVGAFFIDIINALVIKQF 393 (398)
T ss_pred ehhhhHHHHHHHHhhHHHHHHH
Confidence 3444556777887776665543
No 99
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=88.59 E-value=1.4 Score=37.09 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=27.6
Q ss_pred EEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEE
Q 004461 583 ITVLFFGGRDDREALACGARMAEHPGISFIVIRF 616 (752)
Q Consensus 583 I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v 616 (752)
|++++.||+|+..++.++.+.+ ..+.+++.+++
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~ 33 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVV 33 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEe
Confidence 5789999999999999999987 44667777775
No 100
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=88.04 E-value=32 Score=34.74 Aligned_cols=109 Identities=13% Similarity=0.209 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhH
Q 004461 261 ALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKG 340 (752)
Q Consensus 261 ~l~~kl~~~~~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG 340 (752)
.+..-+.+-+-.+-.|+| =+...+. ..|..+..-+++..+.-++.+++.+++++.+.. +-..+.||.
T Consensus 63 ~i~~lLgPAtVAlAvPLY-------kq~~~ik--~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~----~~~Sl~PkS 129 (230)
T COG1346 63 WINFLLGPATVALAVPLY-------KQRHLIK--RHWKPILAGVLVGSVVAIISGVLLAKLFGLSPE----LILSLLPKS 129 (230)
T ss_pred HHHHHHHHHHHHHhhHHH-------HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----HHHHhcccc
Confidence 344445554445666665 2234444 367667777777777788888889999987654 334468999
Q ss_pred HHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004461 341 LVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAV 382 (752)
Q Consensus 341 ~v~l~l~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~pl~~~l 382 (752)
...=+...+..+.|-+.+-+-..++++-++.+.+.+++++++
T Consensus 130 vTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 130 VTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred cccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888889899998887777777777777777777777765
No 101
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=87.71 E-value=15 Score=39.63 Aligned_cols=135 Identities=19% Similarity=0.253 Sum_probs=78.0
Q ss_pred cCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccChhhHHhcCchhhHHHHHHHH
Q 004461 54 LRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGIS 133 (752)
Q Consensus 54 l~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~ 133 (752)
++.|.+++.++ |+++...... +|..-.+.++.+++...-+-||..|+.++.+.+++..+..+...+.-.+
T Consensus 180 ~~nP~iia~i~-Gl~~~~~~i~---------lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~kli 249 (321)
T TIGR00946 180 IKFPPLWAPLL-SVILSLVGFK---------MPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFL 249 (321)
T ss_pred HhCCChHHHHH-HHHHHHHhhc---------CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHH
Confidence 47788887665 4666533221 3434467799999999999999999999988887666666555555443
Q ss_pred -HHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHH
Q 004461 134 -LPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLAL 210 (752)
Q Consensus 134 -~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll~v 210 (752)
.|++. +++...+.. + ....-..+..+...+++...++.+.- +.+ .+.+-+...++-+++++.+.+
T Consensus 250 l~P~i~-~~~~~~~~l----~----~~~~~~~vl~aa~P~a~~~~i~A~~y--~~~-~~~aa~~v~~sT~ls~~tlp~ 315 (321)
T TIGR00946 250 VQPAVM-AGISKLIGL----R----GLELSVAILQAALPGGAVAAVLATEY--EVD-VELASTAVTLSTVLSLISLPL 315 (321)
T ss_pred HHHHHH-HHHHHHhCC----C----hHHHHHHHHHHcCChhhHHHHHHHHh--CCC-HHHHHHHHHHHHHHHHHHHHH
Confidence 44433 333333321 1 12233444455555555566655532 222 345545555555555555443
No 102
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=87.16 E-value=1.3 Score=46.70 Aligned_cols=112 Identities=21% Similarity=0.322 Sum_probs=73.8
Q ss_pred HHhhHHHHHHHhhccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhh
Q 004461 271 SGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIG 350 (752)
Q Consensus 271 ~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~l~~~~ 350 (752)
++++=|+-|.-+|..+|++-+... .+. .++-..+-++ +..++..+..++++.+|+..+|.+=+.-|-.++.+.+..
T Consensus 68 ~~l~P~LIF~GIGAmtDFgpllan-P~~--~llGaaAQ~G-if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~L 143 (360)
T PF03977_consen 68 NGLFPPLIFMGIGAMTDFGPLLAN-PKT--LLLGAAAQFG-IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSKL 143 (360)
T ss_pred cchhhHHHHHHHhHHHhhHHHHhC-HHH--HHHHHHHHHh-HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHhh
Confidence 578888999999999999977642 232 2222333333 334666777789999999999998888888777776543
Q ss_pred hc--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q 004461 351 KD--RKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRAR 390 (752)
Q Consensus 351 ~~--~~~i~~~~~~~lv~~~lv~t~i~~pl~~~l~~~~~~~~ 390 (752)
-. .+.+.-..|+-| + +.-.+-||++|.+-.+++|..
T Consensus 144 Ap~LlgpIaVaAYsYM---a-LvPiiqPpimklLttkkeR~I 181 (360)
T PF03977_consen 144 APHLLGPIAVAAYSYM---A-LVPIIQPPIMKLLTTKKERKI 181 (360)
T ss_pred hHHHHHHHHHHHHHHH---H-HHhhhhhHHHHHhcCHHHHhc
Confidence 21 123333344433 3 235677899988876655544
No 103
>PRK04972 putative transporter; Provisional
Probab=86.69 E-value=5.5 Score=46.40 Aligned_cols=132 Identities=18% Similarity=0.230 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHcc-----cCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 004461 37 ICLVILLTRGLAFILRP-----LRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLE 111 (752)
Q Consensus 37 i~lil~~~~~~~~ll~r-----l~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle 111 (752)
+++-+++..+++.+-=+ +++-.--|.+++|+++|- ++...+.... -+.....++.++|+.+|+..+|+.
T Consensus 386 ~~~Gi~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~--~~~~~~~~~~----~p~~a~~~l~~~GL~lFla~vGl~ 459 (558)
T PRK04972 386 FCAFFIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGF--LRANHPTFGY----IPQGALNMVKEFGLMVFMAGVGLS 459 (558)
T ss_pred HHHHHHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHh--ccccCCCcee----eCHHHHHHHHHHhHHHHHHHHHHh
Confidence 34444555555554333 345556789999999994 3333321111 134567889999999999999998
Q ss_pred cChhh---HHhcCchhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHH-HHHhhccHHHHHHHHHHc
Q 004461 112 LDPKS---LRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMG-VALSITAFPVLARILAEL 182 (752)
Q Consensus 112 ~d~~~---l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~-~~ls~Ts~~vv~~iL~el 182 (752)
--... +++.+.+.+.++..-.++|.++++.+++.+.+ . .....+| ++-+.|++|.........
T Consensus 460 aG~~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k-----~---~~~~~~G~~aG~~t~~~~l~~~~~~~ 526 (558)
T PRK04972 460 AGSGINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLR-----M---NRALLFGAIMGARTCAPAMEIISDTA 526 (558)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-----C---CHHHHHHHHhCCCCCcHHHHHHHhhc
Confidence 77754 45556666667777777777777766654432 1 1123444 455778888777765443
No 104
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=86.50 E-value=6.2 Score=38.68 Aligned_cols=101 Identities=19% Similarity=0.306 Sum_probs=64.1
Q ss_pred HHHHHHHHHHccc---CCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHH-------HHHHHHhhc
Q 004461 42 LLTRGLAFILRPL---RQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLI-------FFMFLVGLE 111 (752)
Q Consensus 42 ~~~~~~~~ll~rl---~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~-------~llF~~Gle 111 (752)
++-++-+++.||+ |++.----|+.|+++...+ |.... ..+....+..++.+|++ |-.-....|
T Consensus 23 ~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~g-G~~Tg------G~kGlaDi~lfsGiglmGGaMlRDfAIvaTAf~ 95 (254)
T TIGR00808 23 LMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVG-GVYTG------GEKGLADIAIFGGFGLMGGAMLRDLAIVATAFE 95 (254)
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHc-ccccC------CccccchhhhhcchhhhhhHHHHHHHHHHHhhc
Confidence 3334445555555 6666666777788875321 11110 01222233344444432 223356779
Q ss_pred cChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 004461 112 LDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRET 149 (752)
Q Consensus 112 ~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~ 149 (752)
.|.+++||.+..-..--+.+.++||+.+..+++.+++.
T Consensus 96 v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~ 133 (254)
T TIGR00808 96 VDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYR 133 (254)
T ss_pred CcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999888888899999999999999999763
No 105
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=85.29 E-value=19 Score=39.36 Aligned_cols=117 Identities=9% Similarity=0.016 Sum_probs=67.1
Q ss_pred HHHhhHHHHHHHhhccccchhhchhh-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH-HhhhhHHHHHHHH
Q 004461 270 VSGIFLPLYFVSSGLKTNIATIQGLQ-SWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGI-LMNTKGLVELIVL 347 (752)
Q Consensus 270 ~~~~~~piFFv~~Gl~~d~~~l~~~~-~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl-~l~~rG~v~l~l~ 347 (752)
..+.|+-+||+.+|+..++..+.... .............+..-......+.+.+.++.-++..|- .|.--=..+.+..
T Consensus 67 l~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GGHGtaAA~~ 146 (404)
T COG0786 67 LQDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHGTAAAWG 146 (404)
T ss_pred cccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCCCchHHHHH
Confidence 46789999999999999998886532 111112222222333444444556677887776666632 2221112355566
Q ss_pred HhhhccCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHhchh
Q 004461 348 NIGKDRKVLNDQVFA--IMILMAVVTTFMTTPLVMAVYKPA 386 (752)
Q Consensus 348 ~~~~~~~~i~~~~~~--~lv~~~lv~t~i~~pl~~~l~~~~ 386 (752)
....+.|.-+..... .-.+..+.-.++..|+.+|+.++.
T Consensus 147 ~~f~~~G~~~A~~va~A~ATfGlv~GgliGgpva~~li~k~ 187 (404)
T COG0786 147 PTFEDLGAEGATEVAMASATFGLVAGGLIGGPVARWLIKKN 187 (404)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHHhHhcCcHHHHHHHHhc
Confidence 677777665443322 222333444556789999988654
No 106
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=85.29 E-value=4.8 Score=39.57 Aligned_cols=37 Identities=22% Similarity=0.160 Sum_probs=33.0
Q ss_pred EEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEee
Q 004461 582 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLL 618 (752)
Q Consensus 582 ~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~ 618 (752)
||++.+.||.|+--++.++.+.++..+.+++++++..
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~ 37 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDH 37 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 5899999999999999999999888888899998864
No 107
>PRK03818 putative transporter; Validated
Probab=84.03 E-value=25 Score=41.02 Aligned_cols=106 Identities=21% Similarity=0.301 Sum_probs=67.4
Q ss_pred hHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccChhhHHh----cCchhhHHHHHHHHH
Q 004461 59 VIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQ----TGKKALGIAIAGISL 134 (752)
Q Consensus 59 iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~----~~~~~~~i~~~~~~~ 134 (752)
.-|-+++|+++|-. +...+.... . +......+.++|+.+|+..+|++--...+.. .+.+...+|..-.++
T Consensus 403 ~~G~L~~gl~~g~~--~~~~~~~~~-~---p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~ 476 (552)
T PRK03818 403 AGGPLIVALILGRI--GSIGKLYWF-M---PPSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAV 476 (552)
T ss_pred chHHHHHHHHHHhc--cCCCCceee-c---CHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHH
Confidence 56799999999952 332221111 1 2345678899999999999999988776543 345555666666667
Q ss_pred HHHHHHHHHHHhhhhhccCCchhHHHHHHH-HHHhhccHHHHHHH
Q 004461 135 PFALGIGSSFLLRETISKGVDSTSFLVFMG-VALSITAFPVLARI 178 (752)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~-~~ls~Ts~~vv~~i 178 (752)
|.++++.+++.+.+ .+ ....+| ++-+.|++|.....
T Consensus 477 ~~~~~~~~~~~~~~-----~~---~~~~~G~~aG~~t~tp~l~~a 513 (552)
T PRK03818 477 PLLIVGILARMLAK-----MN---YLTLCGMLAGSMTDPPALAFA 513 (552)
T ss_pred HHHHHHHHHHHHHc-----CC---HHHHHHHHhccCCCcHHHHHH
Confidence 77777666544332 11 133444 44577888887665
No 108
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=83.46 E-value=11 Score=39.86 Aligned_cols=75 Identities=19% Similarity=0.225 Sum_probs=53.9
Q ss_pred hHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccChhhHHhcCchhhHHHHHHHHHHHHH
Q 004461 59 VIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFAL 138 (752)
Q Consensus 59 iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~ 138 (752)
.+--|+.|+++|...- ..+ + .++.=..+++.|+.|..|.++|++.+.+.+.+.+.+++..+.+++.+
T Consensus 169 lilpILiGmilGNld~-~~~---~---------~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~ 235 (312)
T PRK12460 169 ALLPLVLGMILGNLDP-DMR---K---------FLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFF 235 (312)
T ss_pred HHHHHHHHHHHhccch-hhH---H---------HHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 5556677888886211 111 1 11111223888899999999999999999999999999888888888
Q ss_pred HHHHHHHh
Q 004461 139 GIGSSFLL 146 (752)
Q Consensus 139 ~~~~~~~l 146 (752)
++.+..++
T Consensus 236 ~~~i~rll 243 (312)
T PRK12460 236 NIFADRLV 243 (312)
T ss_pred HHHHHHHh
Confidence 87777655
No 109
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=83.17 E-value=7.5 Score=41.86 Aligned_cols=102 Identities=20% Similarity=0.177 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHcccCCC--hhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 004461 34 ILQICLVILLTRGLAFILRPLRQP--RVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLE 111 (752)
Q Consensus 34 l~~i~lil~~~~~~~~ll~rl~~P--~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle 111 (752)
..++.+++.++...+++++++|+| .++|-++++.++.-...... .-. +.+..++.+++=..+|.+
T Consensus 154 ~~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~----------~~P---~~l~~~aqv~iG~~iG~~ 220 (318)
T PF05145_consen 154 WLWLALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSF----------SLP---PWLVNAAQVLIGASIGSR 220 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCC----------CCC---HHHHHHHHHHHHHHHHcc
Confidence 344566667788889999999986 45566666555553211110 111 345666777777889999
Q ss_pred cChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 004461 112 LDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRET 149 (752)
Q Consensus 112 ~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~ 149 (752)
++.+.+|+..| .+..++...++-+.++.+.++.+...
T Consensus 221 f~~~~l~~~~~-~~~~~l~~~~~~l~~~~~~a~~l~~~ 257 (318)
T PF05145_consen 221 FTRETLRELRR-LLPPALLSTLLLLALCALFAWLLSRL 257 (318)
T ss_pred ccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887654 44455555555555566666666543
No 110
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=81.85 E-value=64 Score=32.90 Aligned_cols=109 Identities=12% Similarity=0.142 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhH
Q 004461 261 ALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKG 340 (752)
Q Consensus 261 ~l~~kl~~~~~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG 340 (752)
.+..-+.+-+-.+-.|+| =+...+. ..|..+++-+++..+.-+++++..+++++.+.. +-..+.||.
T Consensus 66 ~l~~lLgPAtVALAvPLY-------~q~~~lk--~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~----~~~Sl~pKS 132 (232)
T PRK04288 66 IISFFLEPATIAFAIPLY-------KKRDVLK--KYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA----VMASMLPQA 132 (232)
T ss_pred HHHHHHHHHHHHHHHHHH-------HhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhHh
Confidence 333344455555666665 2334444 355555666666667778888888889887663 444578999
Q ss_pred HHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004461 341 LVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAV 382 (752)
Q Consensus 341 ~v~l~l~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~pl~~~l 382 (752)
...=+...+..+.|-+..-+-...+++-++...+.+++++++
T Consensus 133 VTtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~~ 174 (232)
T PRK04288 133 ATTAIALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKLF 174 (232)
T ss_pred hhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888888888888888877776777677777677777777765
No 111
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=80.45 E-value=46 Score=34.72 Aligned_cols=91 Identities=18% Similarity=0.216 Sum_probs=54.6
Q ss_pred HHHHHHHhhHHHHHHHhhccccchhhchhhhHHHHHHHHHHHHHHH-HHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHH
Q 004461 266 VEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGK-IVGTFVVSLSFKVPLREALALGILMNTKGLVEL 344 (752)
Q Consensus 266 l~~~~~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K-~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l 344 (752)
++.+ ..+-+.++....|+++|++.+... +.....+....++.= ++.++..+++++.++.+++.+|..+++-. .-
T Consensus 43 ~~~l-~~igl~~llF~~Gl~~d~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~ 117 (273)
T TIGR00932 43 VNHL-AEFGVILLMFLIGLELDLERLWKL--RKAAFGVGVLQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSS--TA 117 (273)
T ss_pred HHHH-HHHHHHHHHHHHHhCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HH
Confidence 4444 455666788899999999988642 222222222233333 33344456778899999999999887542 23
Q ss_pred HHHHhhhccCCCCHHHH
Q 004461 345 IVLNIGKDRKVLNDQVF 361 (752)
Q Consensus 345 ~l~~~~~~~~~i~~~~~ 361 (752)
+.+....+.+..+.+.-
T Consensus 118 v~~~il~~~~~~~~~~g 134 (273)
T TIGR00932 118 VVVQVLKERGLLKTPFG 134 (273)
T ss_pred HHHHHHHHcCcccChHH
Confidence 34445555565554433
No 112
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=80.26 E-value=6.6 Score=40.80 Aligned_cols=108 Identities=8% Similarity=0.025 Sum_probs=62.1
Q ss_pred EEccCCcchHHHHHHHHHHhhCCC-eEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhcCCCCCeEEEEEE--
Q 004461 585 VLFFGGRDDREALACGARMAEHPG-ISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERL-- 661 (752)
Q Consensus 585 v~~~gg~ddreAL~~a~~ma~~~~-~~ltvl~v~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~v~~~e~~-- 661 (752)
+++.-.|.|+-|++.|.|+.++.+ .++|++.+-+++.. +++.+++.-.. .-++....+..
T Consensus 30 ~~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~---------------~~~~lr~aLAm--GaD~avli~d~~~ 92 (256)
T PRK03359 30 ADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALT---------------NAKGRKDVLSR--GPDELIVVIDDQF 92 (256)
T ss_pred CccccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchh---------------hHHHHHHHHHc--CCCEEEEEecCcc
Confidence 455667999999999999999864 89999999764322 12334433322 12222222111
Q ss_pred -ecChHHHHHH----HHhccCCCEEEEccCC----CccccccccCCCCCCccccchhh
Q 004461 662 -VRNTAETIAV----IREVSRCNLLLVGRMP----DGELALALSTRSDCLELGPVGSL 710 (752)
Q Consensus 662 -v~~g~~~~~~----i~~~~~~DLiivG~~~----~~~~~~gl~~w~e~peLG~igd~ 710 (752)
-.|...|..+ +++. +||||+-|++. .+.+---+.+|-..|-+..+-++
T Consensus 93 ~g~D~~~tA~~La~ai~~~-~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~l 149 (256)
T PRK03359 93 EQALPQQTASALAAAAQKA-GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSKI 149 (256)
T ss_pred cCcCHHHHHHHHHHHHHHh-CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEEE
Confidence 1233333333 3443 29999999987 22222224445555777666654
No 113
>PRK05326 potassium/proton antiporter; Reviewed
Probab=79.53 E-value=8.3 Score=45.10 Aligned_cols=64 Identities=22% Similarity=0.314 Sum_probs=40.6
Q ss_pred HHHHHcccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccChhhHHh
Q 004461 47 LAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQ 119 (752)
Q Consensus 47 ~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~ 119 (752)
.+.+.+.+|.+.+++-.++|+++|..-.... .......+.++.+...++.+..|+.+|+..+..
T Consensus 235 ~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~---------~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~ 298 (562)
T PRK05326 235 IFALTAALGGSGFLAVYLAGLVLGNRPIRHR---------HSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLD 298 (562)
T ss_pred HHHHHHHHCCcHHHHHHHHHHHHhCCcccch---------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3344455667777777778888874311100 112334566777777888889999999988764
No 114
>COG2855 Predicted membrane protein [Function unknown]
Probab=78.56 E-value=12 Score=40.14 Aligned_cols=56 Identities=27% Similarity=0.325 Sum_probs=46.6
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHhhccChhhHHhcCchhhHHHHHHHHHHHHHHH
Q 004461 85 FPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGI 140 (752)
Q Consensus 85 fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~ 140 (752)
.|......+..++.+-+..=|...|+++|++.++|.+.|.+..++..++.-.+.++
T Consensus 272 iP~~~~~~~~~lst~ll~~aMaAlGL~t~i~~l~~~G~kpl~la~~~~~~l~~~~l 327 (334)
T COG2855 272 IPAEVVSALVTLSTFLLAMAMAALGLTTHIKALKKAGGKPLLLALLLWVFLVVGGL 327 (334)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHcCccHHHHHHHHHHHHHHHHH
Confidence 35556778899999999999999999999999999999999888877765444444
No 115
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=78.55 E-value=10 Score=36.89 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=32.7
Q ss_pred EEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEee
Q 004461 582 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLL 618 (752)
Q Consensus 582 ~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~ 618 (752)
+|++.+.||.|+--++.++.+...+.+.+++++++..
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~ 37 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDH 37 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 5889999999999999999998877778899998864
No 116
>COG2431 Predicted membrane protein [Function unknown]
Probab=78.55 E-value=49 Score=34.37 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=50.9
Q ss_pred hhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccC---hhhH-HhcCchhhHHHHHHHH
Q 004461 58 RVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELD---PKSL-RQTGKKALGIAIAGIS 133 (752)
Q Consensus 58 ~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d---~~~l-~~~~~~~~~i~~~~~~ 133 (752)
.+.+..+.|+++|-..-... ...+...+..+.+++|.+|.++. ...- +.-.|+.+..++...+
T Consensus 108 k~~~~vl~g~~~G~l~~~~~-------------~~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Lnk~gl~l~~i~il 174 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSFL-------------NFPENASEYLLYLLLFLIGIQLGNSGISLRQVLLNKRGLILAFITLL 174 (297)
T ss_pred HHHHHHHHHHHHHHHhcccc-------------cCchhHHHHHHHHHHHHHHHHhccccchhhhHHhccchHHHHHHHHH
Confidence 67788888888884322211 11456788999999999999987 3211 1233777777777776
Q ss_pred HHHHHHHHHHHHhh
Q 004461 134 LPFALGIGSSFLLR 147 (752)
Q Consensus 134 ~~~~~~~~~~~~l~ 147 (752)
-..+.|.+.++++.
T Consensus 175 ssliGG~iaa~~l~ 188 (297)
T COG2431 175 SSLIGGLIAAFLLD 188 (297)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666555554
No 117
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=77.12 E-value=67 Score=32.52 Aligned_cols=120 Identities=15% Similarity=0.162 Sum_probs=63.1
Q ss_pred HHHHHHHcccCC----ChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccChhhHHhc
Q 004461 45 RGLAFILRPLRQ----PRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQT 120 (752)
Q Consensus 45 ~~~~~ll~rl~~----P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~ 120 (752)
.+..++.||.|- |-.++.++...++=. +|. ++-+.. +..++++.+ +|-.-.-|.+-+==+++.+||+
T Consensus 19 ~~a~~l~~r~~~~~l~PlLv~~~~li~~L~~--~~i--~Y~~Y~---~g~~~i~~l--LgPAtVAlAvPLYkq~~~ik~~ 89 (230)
T COG1346 19 FAAKRLYKRTKSPFLNPLLVATVLLIAFLLL--FGI--SYEDYM---KGGQWINFL--LGPATVALAVPLYKQRHLIKRH 89 (230)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHHH--cCC--CHHHHh---cccHHHHHH--HHHHHHHHhhHHHHHHHHHHHH
Confidence 344566777764 555555444444332 111 111111 133444444 2223333444555678889999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHH-HhhccHHHHHHHHHHcc
Q 004461 121 GKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVA-LSITAFPVLARILAELK 183 (752)
Q Consensus 121 ~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~-ls~Ts~~vv~~iL~el~ 183 (752)
++....-.+.+.++.++.+..++.+++.. ..+....+ -|+|. |+.+.+-+++|
T Consensus 90 w~~I~~g~~vGs~~ai~s~~llak~~g~~---------~~~~~Sl~PkSvTT-piAm~vs~~iG 143 (230)
T COG1346 90 WKPILAGVLVGSVVAIISGVLLAKLFGLS---------PELILSLLPKSVTT-PIAMEVSESIG 143 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------HHHHHHhccccccc-HHHHHHHHhcC
Confidence 98888777777777777777666666531 11222221 24444 67777666665
No 118
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=77.07 E-value=4.9 Score=43.04 Aligned_cols=131 Identities=18% Similarity=0.204 Sum_probs=77.8
Q ss_pred HHhhHHHHHHHhhccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChHHHHHHHHHhhhhHHHHHH
Q 004461 271 SGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLS-----FKVPLREALALGILMNTKGLVELI 345 (752)
Q Consensus 271 ~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~-----~~~~~~~~~~lgl~l~~rG~v~l~ 345 (752)
++++=|+-|..+|..+|++-+.... . ..++-..+-++-+.....+..+ .+++.+|+-.+|.+=+.-|-.++.
T Consensus 133 ~gi~P~LIF~GIGAMtDFgpLlanP-~--~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIf 209 (433)
T PRK15475 133 SGVAPLVIFMGVGAMTDFGPLLANP-R--TLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIY 209 (433)
T ss_pred cchHHHHHHHhccHHhcchHHhhCH-H--HHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHH
Confidence 6788889999999999998776422 1 2223333333333332222222 378999999999987888877777
Q ss_pred HHHhhhc--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhccccccccccCCCCCcceEEEEe
Q 004461 346 VLNIGKD--RKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACF 414 (752)
Q Consensus 346 l~~~~~~--~~~i~~~~~~~lv~~~lv~t~i~~pl~~~l~~~~~~~~~~~~~~~~i~~~~~~~e~rILv~v 414 (752)
+.+..-. .|.|.-..|+-| ++ .-.+-||+.|.+-.+++|..+ -++.|++ .+..||+.|+
T Consensus 210 vsskLAP~Llg~IaVAAYSYM---aL-VPiIQPpimklLTTkkER~I~-M~~lr~V-----Sk~eKIlFPi 270 (433)
T PRK15475 210 LSGKLAPELLGAIAVAAYSYM---AL-VPLIQPPIMKALTTETERKIR-MVQLRTV-----SKREKILFPV 270 (433)
T ss_pred hHhhhhhHhHHHHHHHHHHHH---HH-HhcccchHHHhccCHHHhCcc-CCCCCCC-----CccchhHHHH
Confidence 7654321 133344444444 32 356778888888665555441 1233322 2345777765
No 119
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=76.26 E-value=5.3 Score=42.80 Aligned_cols=131 Identities=18% Similarity=0.201 Sum_probs=77.5
Q ss_pred HHhhHHHHHHHhhccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChHHHHHHHHHhhhhHHHHHH
Q 004461 271 SGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLS-----FKVPLREALALGILMNTKGLVELI 345 (752)
Q Consensus 271 ~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~-----~~~~~~~~~~lgl~l~~rG~v~l~ 345 (752)
++++=|+-|..+|..+|++-+.... . ..++-..+-++-+.....+..+ .+++.+|+-.+|.+=+.-|-.++.
T Consensus 133 ~gi~P~LIF~GIGAMtDFgpLlanP-~--~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIf 209 (433)
T PRK15477 133 SGVAPLVIFMGVGAMTDFGPLLANP-R--TLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIY 209 (433)
T ss_pred cchHHHHHHHhccHHhcchHHhhCH-H--HHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHH
Confidence 5788889999999999998776422 1 2223333333433332222222 378999999999987888877777
Q ss_pred HHHhhhc--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhccccccccccCCCCCcceEEEEe
Q 004461 346 VLNIGKD--RKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACF 414 (752)
Q Consensus 346 l~~~~~~--~~~i~~~~~~~lv~~~lv~t~i~~pl~~~l~~~~~~~~~~~~~~~~i~~~~~~~e~rILv~v 414 (752)
+.+..-. .|.|.-..|+-| ++ .-.+-||+.|.+-.+++|..+ -++.|++ .+..||+.|+
T Consensus 210 vsskLAP~Llg~IaVAAYSYM---aL-VPiIQPpimklLTTkkER~I~-M~~lr~V-----Sk~eKIlFPi 270 (433)
T PRK15477 210 LSGKLAPELLGAIAVAAYSYM---AL-VPLIQPPIMKALTTEKERKIR-MVQLRTV-----SKREKILFPV 270 (433)
T ss_pred hHhhhhhHhHHHHHHHHHHHH---HH-HhcccchHHHhccCHHHhCcc-CCCCCCC-----CccchhHHHH
Confidence 7654321 133344444444 32 356678888887665555441 1233322 2345777765
No 120
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=76.24 E-value=5.3 Score=42.80 Aligned_cols=131 Identities=18% Similarity=0.201 Sum_probs=77.5
Q ss_pred HHhhHHHHHHHhhccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChHHHHHHHHHhhhhHHHHHH
Q 004461 271 SGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLS-----FKVPLREALALGILMNTKGLVELI 345 (752)
Q Consensus 271 ~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~-----~~~~~~~~~~lgl~l~~rG~v~l~ 345 (752)
++++=|+-|..+|..+|++-+.... . ..++-..+-++-+.....+..+ .+++.+|+-.+|.+=+.-|-.++.
T Consensus 133 ~gi~P~LIF~GIGAMtDFgpLlanP-~--~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIf 209 (433)
T PRK15476 133 SGVAPLVIFMGVGAMTDFGPLLANP-R--TLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIY 209 (433)
T ss_pred cchHHHHHHHhccHHhcchHHhhCH-H--HHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHH
Confidence 6788889999999999998776422 1 2223333333433332222222 378999999999987888877777
Q ss_pred HHHhhhc--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhccccccccccCCCCCcceEEEEe
Q 004461 346 VLNIGKD--RKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACF 414 (752)
Q Consensus 346 l~~~~~~--~~~i~~~~~~~lv~~~lv~t~i~~pl~~~l~~~~~~~~~~~~~~~~i~~~~~~~e~rILv~v 414 (752)
+.+..-. .|.|.-..|+-| ++ .-.+-||+.|.+-.+++|..+ -++.|++ .+..||+.|+
T Consensus 210 vsskLAP~Llg~IaVAAYSYM---aL-VPiIQPpimklLTTkkER~I~-M~~lr~V-----Sk~eKIlFPi 270 (433)
T PRK15476 210 LSGKLAPELLGAIAVAAYSYM---AL-VPLIQPPIMKALTTEKERKIR-MVQLRTV-----SKREKILFPV 270 (433)
T ss_pred hHhhhhhHhHHHHHHHHHHHH---HH-HhcccchHHHhccCHHHhCcc-CCCCCCC-----CccchhHHHH
Confidence 7654321 133344444444 32 356678888887665555441 1233322 2345777665
No 121
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=75.66 E-value=42 Score=36.99 Aligned_cols=121 Identities=17% Similarity=0.209 Sum_probs=63.5
Q ss_pred chHHHHHHHHHHHHHHhhHHHHHHH-hhccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHH--HHH
Q 004461 257 PFANALVEKVEDLVSGIFLPLYFVS-SGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREAL--ALG 333 (752)
Q Consensus 257 ~~~~~l~~kl~~~~~~~~~piFFv~-~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~--~lg 333 (752)
-+.++-.+.+..++..+++|.+... ++-..+...+. .++.+.+..++..+.-++..++..++++.+.++.. ..+
T Consensus 24 ~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (385)
T PF03547_consen 24 ILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLL---SLWFIPVFAFIIFILGLLLGFLLSRLFRLPKEWRGVFVLA 100 (385)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccceEEEec
Confidence 3445566778888889999988444 44334344343 23333333344444445566667777777765543 333
Q ss_pred HHhhhhHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 004461 334 ILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKP 385 (752)
Q Consensus 334 l~l~~rG~v~l~l~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~pl~~~l~~~ 385 (752)
...+.-|.+.+-+....... +.....++..++.+.+.-++...+..+
T Consensus 101 ~~~~N~~~lglpi~~~l~g~-----~~~~~~~~~~~~~~i~~~~~~~~l~~~ 147 (385)
T PF03547_consen 101 ASFGNTGFLGLPILQALFGE-----RGVAYAIIFDVVNNIILWSLGYFLLES 147 (385)
T ss_pred ccCCcchhhHHHHHHHHhcc-----hhhhhehHHHHhhHHHHHHHHHHhhcc
Confidence 33455566666665544333 222223333434444444444444443
No 122
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=75.26 E-value=12 Score=40.41 Aligned_cols=109 Identities=22% Similarity=0.183 Sum_probs=61.5
Q ss_pred cHHHHHHH-HHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHH
Q 004461 29 ALPLAILQ-ICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFL 107 (752)
Q Consensus 29 ~~~~~l~~-i~lil~~~~~~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~ 107 (752)
+++....+ +.+.+.++.+.+.+.|++|+|.. ++++.+++|-.+ +..+ .-..+.-..+..++..++.-.
T Consensus 181 ~~~~~~~~~~~~l~~~~~~~g~l~~~lr~Pa~--~ll~~l~l~a~v--------~~~~-~~~~~lP~wl~~va~~~iG~~ 249 (352)
T COG3180 181 WLPPVDWLILLLLILAALLGGLLGKLLRFPAP--TLLGPLLLGAIV--------HFGG-GITIQLPAWLLAVAQALIGAL 249 (352)
T ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHcCCcH--HHHHHHHHHHHh--------hccc-ceeeeCCHHHHHHHHHHHHHH
Confidence 34444444 56666667777888899999853 333444433210 0000 001122344557788889999
Q ss_pred HhhccChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 004461 108 VGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRET 149 (752)
Q Consensus 108 ~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~ 149 (752)
+|.++|...+++..|....+ +.+.+.-+..+..+++++...
T Consensus 250 IG~~f~~~~l~~~~r~~~~~-~v~ii~l~~~~~~~a~ll~~~ 290 (352)
T COG3180 250 IGSRFDRSILREAKRLLPAI-LVSIIALMAIAAGMAGLLSWL 290 (352)
T ss_pred HcccccHHHHHHhHhhcchH-HHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998766654433 333333334444455555543
No 123
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=72.75 E-value=1.1e+02 Score=30.99 Aligned_cols=108 Identities=13% Similarity=0.230 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHH
Q 004461 262 LVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGL 341 (752)
Q Consensus 262 l~~kl~~~~~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~ 341 (752)
+..-+.+-+-.+-.|+| =+...+. ..|..+...+.++.+.-++.++..++.++.+. .+.. .+.+|..
T Consensus 61 l~~lLgPAtVALAvPLY-------~~~~~lk--~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~--~i~~--Sl~pkSv 127 (226)
T TIGR00659 61 INDLLGPAVVALAIPLY-------KQLPQIK--KYWKEIILNVAVGSVIAIISGTLLALLLGLGP--EIIA--SLLPKSV 127 (226)
T ss_pred HHHhhHHHHHHHHHHHH-------HhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH--HHHH--HhhhHHh
Confidence 33344444455666665 2333444 34554555555566667778888888888863 3333 4689998
Q ss_pred HHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004461 342 VELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAV 382 (752)
Q Consensus 342 v~l~l~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~pl~~~l 382 (752)
..=+...+..+.|-..+-+-...+++-++.+.+.+++++++
T Consensus 128 TtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 128 TTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFGPMVLRYF 168 (226)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888888887766555666666666666666777665
No 124
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=71.43 E-value=39 Score=36.17 Aligned_cols=81 Identities=15% Similarity=0.164 Sum_probs=54.1
Q ss_pred HhhHHHHHHHhhccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhh
Q 004461 272 GIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGK 351 (752)
Q Consensus 272 ~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~l~~~~~ 351 (752)
..++.+=-++.|.++++.++.+ ..+......++...+.=.++.++..+.+|++++.+..++...+.=|.-+++...-..
T Consensus 59 k~~Lr~gIVLlG~~l~~~~i~~-~G~~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i 137 (305)
T PF03601_consen 59 KKLLRLGIVLLGFRLSFSDILA-LGWKGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVI 137 (305)
T ss_pred HHHHHHHHHHHCccccHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccc
Confidence 4566777889999999998875 233323333333333334444444499999999999999988777776666665444
Q ss_pred cc
Q 004461 352 DR 353 (752)
Q Consensus 352 ~~ 353 (752)
+.
T Consensus 138 ~a 139 (305)
T PF03601_consen 138 KA 139 (305)
T ss_pred cC
Confidence 43
No 125
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=70.77 E-value=13 Score=36.44 Aligned_cols=57 Identities=19% Similarity=0.242 Sum_probs=43.0
Q ss_pred EEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhc
Q 004461 582 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKT 649 (752)
Q Consensus 582 ~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~ 649 (752)
+|+|.+.||+|+--.+.+..++.+..+.+++++++...-. .+...+.++++++..++
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~-----------~~s~~~~~~v~~~~~~~ 57 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLR-----------EESDEEAEFVEEICEQL 57 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STS-----------CCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCC-----------cccchhHHHHHHHHHhc
Confidence 6899999999999999999999999999999999985322 22334557777777765
No 126
>PRK06801 hypothetical protein; Provisional
Probab=70.64 E-value=17 Score=38.44 Aligned_cols=110 Identities=16% Similarity=0.133 Sum_probs=72.5
Q ss_pred cceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEecCCCCCC
Q 004461 492 SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGT 571 (752)
Q Consensus 492 ~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv~rg~~~~ 571 (752)
++..|-.+-... ..+...|++.|++.++.+|+.-+.+.....+. ..+........++++.||.+=-|+|..-
T Consensus 16 ~~yaV~Afn~~n--~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~-----~~~~~~~~~~a~~~~vpV~lHlDH~~~~- 87 (286)
T PRK06801 16 HGYALGAFNVLD--SHFLRALFAAAKQERSPFIINIAEVHFKYISL-----ESLVEAVKFEAARHDIPVVLNLDHGLHF- 87 (286)
T ss_pred CCceEEEEeeCC--HHHHHHHHHHHHHHCCCEEEEeCcchhhcCCH-----HHHHHHHHHHHHHCCCCEEEECCCCCCH-
Confidence 444444554444 47899999999999999999998876543331 2378888899999999999988997530
Q ss_pred cccc--cCCcceEEEEEccCCcch-HHHHHHHHH---HhhCCCeEE
Q 004461 572 TQVS--ASNVSYTITVLFFGGRDD-REALACGAR---MAEHPGISF 611 (752)
Q Consensus 572 ~~~~--~~~~~~~I~v~~~gg~dd-reAL~~a~~---ma~~~~~~l 611 (752)
.... -...+.. +-++|+..+ +|-++..++ +|+..|+.+
T Consensus 88 e~i~~Ai~~GftS--Vm~D~S~l~~eeNi~~t~~v~~~a~~~gv~V 131 (286)
T PRK06801 88 EAVVRALRLGFSS--VMFDGSTLEYEENVRQTREVVKMCHAVGVSV 131 (286)
T ss_pred HHHHHHHHhCCcE--EEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 0000 0001223 345777655 777766644 477777754
No 127
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=70.12 E-value=15 Score=35.24 Aligned_cols=27 Identities=26% Similarity=0.198 Sum_probs=24.9
Q ss_pred cchHHHHHHHHHHhhCCCeEEEEEEEe
Q 004461 591 RDDREALACGARMAEHPGISFIVIRFL 617 (752)
Q Consensus 591 ~ddreAL~~a~~ma~~~~~~ltvl~v~ 617 (752)
+.++|+++.|+++++..|.+++++-+-
T Consensus 15 ~~~~e~l~~A~~La~~~g~~v~av~~G 41 (164)
T PF01012_consen 15 PVSLEALEAARRLAEALGGEVTAVVLG 41 (164)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEe
Confidence 778999999999999999999999876
No 128
>PRK12342 hypothetical protein; Provisional
Probab=69.51 E-value=11 Score=39.19 Aligned_cols=35 Identities=11% Similarity=0.001 Sum_probs=29.4
Q ss_pred EEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeec
Q 004461 584 TVLFFGGRDDREALACGARMAEHPGISFIVIRFLLA 619 (752)
Q Consensus 584 ~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~ 619 (752)
-+++.=.|.|+-|++.|.|+. ..|.++|++.+-++
T Consensus 28 ~~~~~iNp~D~~AlE~AlrLk-~~g~~Vtvls~Gp~ 62 (254)
T PRK12342 28 NAEAKISQFDLNAIEAASQLA-TDGDEIAALTVGGS 62 (254)
T ss_pred CCCccCChhhHHHHHHHHHHh-hcCCEEEEEEeCCC
Confidence 346666799999999999999 46899999999764
No 129
>PRK09903 putative transporter YfdV; Provisional
Probab=68.88 E-value=87 Score=33.54 Aligned_cols=150 Identities=16% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHcccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccChhhHHhcCchhhHH
Q 004461 48 AFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGI 127 (752)
Q Consensus 48 ~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i 127 (752)
..+.+-++-|.+++.+++ +++.-..+.. |..-.+.++.+++...-+-||..|..++...++...+..+..
T Consensus 165 ~~l~~~~~nP~iia~~~g-l~~~l~~i~l---------P~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~~~~~~~~ 234 (314)
T PRK09903 165 SALISAAKEPVVWAPVLA-TILVLVGVKI---------PAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAEIAYNT 234 (314)
T ss_pred HHHHHHHhchHHHHHHHH-HHHHHcCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHH
Q 004461 128 AIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWIL 207 (752)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~l 207 (752)
.+=-.+.|++. ++..+.+... ....-..+.++...+++...++.+.--.+.+.....+..+.+--++.+.+
T Consensus 235 ~~Kli~~P~i~-~~~~~~~~l~--------~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlpl 305 (314)
T PRK09903 235 FLKLILMPLAL-LLVGMACHLN--------SEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPL 305 (314)
T ss_pred HHHHHHHHHHH-HHHHHHcCCC--------cHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhc
Q 004461 208 LALAVALSG 216 (752)
Q Consensus 208 l~v~~~~~~ 216 (752)
...+..+.+
T Consensus 306 ~~~l~~~~~ 314 (314)
T PRK09903 306 WIYVSRLVS 314 (314)
T ss_pred HHHHHHhhC
No 130
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=68.06 E-value=18 Score=38.57 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=32.6
Q ss_pred eEEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeeccc
Q 004461 581 YTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAAD 621 (752)
Q Consensus 581 ~~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~ 621 (752)
.++++.|.||+|+--.|.++.+.-...+..+.++++.+...
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~ 68 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWK 68 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCC
Confidence 48899999999999999999876554466778888875443
No 131
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=67.94 E-value=31 Score=33.40 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=31.8
Q ss_pred EEEEEccCCcchHHHHHHHHHHhhCC--CeEEEEEEEeec
Q 004461 582 TITVLFFGGRDDREALACGARMAEHP--GISFIVIRFLLA 619 (752)
Q Consensus 582 ~I~v~~~gg~ddreAL~~a~~ma~~~--~~~ltvl~v~~~ 619 (752)
||++.+.||.|+--.+.++.+..++. +.+++.+++...
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~ 40 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEG 40 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECC
Confidence 58999999999999999988887665 778888888743
No 132
>COG2985 Predicted permease [General function prediction only]
Probab=67.52 E-value=20 Score=40.08 Aligned_cols=110 Identities=23% Similarity=0.270 Sum_probs=66.8
Q ss_pred CCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccChhh---HHhcCchhhHHHHHH
Q 004461 55 RQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKS---LRQTGKKALGIAIAG 131 (752)
Q Consensus 55 ~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~---l~~~~~~~~~i~~~~ 131 (752)
++-..-|.+++|++|| .+|.+.+.+- ..| ......+.++|+++||=.+|++---+. +-..+-.....|..-
T Consensus 394 ~LG~aGGpLivaLiLG--~ig~iGpl~w-~mP---~~An~~lrelGl~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~li 467 (544)
T COG2985 394 KLGNAGGPLIVALILG--FIGAIGPLTW-FMP---PGALLALRELGLALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALV 467 (544)
T ss_pred eecccccHHHHHHHHH--HhcccCceEE-EcC---hhHHHHHHHHHHHHHHHhhccccccchHhhhcccchhhhhHHHHH
Confidence 3445567888899988 4565554222 123 345788999999988888887654433 233444444445555
Q ss_pred HHHHHHHHHHHHHHhhhhhccCCchhHHHHHHH-HHHhhccHHHHHHH
Q 004461 132 ISLPFALGIGSSFLLRETISKGVDSTSFLVFMG-VALSITAFPVLARI 178 (752)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~-~~ls~Ts~~vv~~i 178 (752)
.++|.+.++.++.++.+- +| ....| ++-+.|++|...-.
T Consensus 468 t~vp~i~~~llg~~v~km---n~-----~~l~G~laGs~T~ppaLa~a 507 (544)
T COG2985 468 TLVPVIIVFLLGRYVLKM---NW-----LLLCGALAGSMTDPPALAFA 507 (544)
T ss_pred HHHHHHHHHHHHHHHHhc---cH-----HHHhhHHhcCCCChHHHHHH
Confidence 566767776666666431 22 33344 45577887776654
No 133
>PRK10711 hypothetical protein; Provisional
Probab=66.87 E-value=1.5e+02 Score=30.17 Aligned_cols=106 Identities=14% Similarity=0.262 Sum_probs=69.3
Q ss_pred HHHHHHHHHhhHHHHHHHhhccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHH
Q 004461 264 EKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVE 343 (752)
Q Consensus 264 ~kl~~~~~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~ 343 (752)
.-+.+-+-.+-.|+| =+...+. ..|..+..-+.+..+.-++.+++.++.++.+.. +-..|.||....
T Consensus 64 ~lLgPAtVALAvPLY-------~q~~~lk--~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~----~~~Sl~pkSVTt 130 (231)
T PRK10711 64 DLLQPAVVALAFPLY-------EQLHQIR--ARWKSIISICFIGSVVAMVTGTAVALWMGATPE----IAASILPKSVTT 130 (231)
T ss_pred hhhhHHHHHHHHHHH-------HhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhhhhhH
Confidence 334444445556665 2233343 345555566666677778888888989887654 334478999888
Q ss_pred HHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004461 344 LIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAV 382 (752)
Q Consensus 344 l~l~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~pl~~~l 382 (752)
=+...+..+.|-+.+-+-...+++-++...+.+++++++
T Consensus 131 PIAm~is~~iGG~~sLta~~ViitGi~Ga~~g~~llk~~ 169 (231)
T PRK10711 131 PIAMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLNAM 169 (231)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888888888887766666666666666666666777654
No 134
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=66.69 E-value=7 Score=41.31 Aligned_cols=113 Identities=20% Similarity=0.254 Sum_probs=70.0
Q ss_pred HHHhhHHHHHHHhhccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------ChHHHHHHHHHhhhhHHHH
Q 004461 270 VSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKV------PLREALALGILMNTKGLVE 343 (752)
Q Consensus 270 ~~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~------~~~~~~~lgl~l~~rG~v~ 343 (752)
.++++=|+-|.-+|..+|++-+.... + ..++-..+-++-+ .+++.+..+++ +.+|+-.+|.+=+.-|-.+
T Consensus 61 ~~~l~P~LIFlGIGAmtDFgpllanP-~--~~llGaaAQ~GiF-~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGPt~ 136 (354)
T TIGR01109 61 GSGIAPLLIFMGIGALTDFGPLLANP-R--TLLLGAAAQFGIF-ATVFGALTLNFFGIISFSLPQAAAIGIIGGADGPTA 136 (354)
T ss_pred hcchHHHHHHHhccHHhhhHHHHhCh-H--HHHHHHHHHhhHH-HHHHHHHHhCCCcccccChhhceeeeeeccCCCchh
Confidence 36788899999999999999776422 2 2233333333333 34555666677 6799999998877777777
Q ss_pred HHHHHhhhc--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q 004461 344 LIVLNIGKD--RKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRAR 390 (752)
Q Consensus 344 l~l~~~~~~--~~~i~~~~~~~lv~~~lv~t~i~~pl~~~l~~~~~~~~ 390 (752)
+.+.+..-. .+.+.-..|+-| + +.-.+-||++|.+-.+++|..
T Consensus 137 If~s~~lap~Llg~IaVAAYsYM---a-LvPiiqPpimklLttkkeR~I 181 (354)
T TIGR01109 137 IYLSGKLAPELLAAIAVAAYSYM---A-LVPIIQPPIMKALTSEKERKI 181 (354)
T ss_pred hhhHhhhhhHHHHHHHHHHHHHH---H-HHhcccchHHHhhcChHHhcc
Confidence 766653221 123333334433 3 235667888888766555544
No 135
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=66.17 E-value=1.9e+02 Score=31.05 Aligned_cols=73 Identities=16% Similarity=0.089 Sum_probs=51.5
Q ss_pred HHHhhccccchhhchhh-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccC
Q 004461 279 FVSSGLKTNIATIQGLQ-SWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRK 354 (752)
Q Consensus 279 Fv~~Gl~~d~~~l~~~~-~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~l~~~~~~~~ 354 (752)
=..+|.+++...+.... .+...++..+..+..-.+..++..++.++++.+.+. .+.|-|.-|+.+.....+.+
T Consensus 214 G~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~L---a~aPGGl~eM~l~A~~l~~d 287 (318)
T PF05145_consen 214 GASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSRLTGIDFLTALL---ATAPGGLAEMALIALALGAD 287 (318)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCccHHHHHHHHHHcCCC
Confidence 35788888877665432 344455566666667788888889999998866543 35898988888877666654
No 136
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=64.17 E-value=35 Score=36.04 Aligned_cols=112 Identities=16% Similarity=0.156 Sum_probs=69.6
Q ss_pred ccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEecCCCCC
Q 004461 491 LSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGG 570 (752)
Q Consensus 491 ~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv~rg~~~ 570 (752)
+++..|-.+-... ..+...|++.|++.+..+|+.-+.+.-...+. ..++.......+++++||.+=-|+|.+-
T Consensus 15 ~~~yaV~Afn~~n--~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~-----~~~~~~~~~~a~~~~vpv~lHlDH~~~~ 87 (281)
T PRK06806 15 QENYGVGAFSVAN--MEMVMGAIKAAEELNSPIILQIAEVRLNHSPL-----HLIGPLMVAAAKQAKVPVAVHFDHGMTF 87 (281)
T ss_pred HCCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhccCCh-----HHHHHHHHHHHHHCCCCEEEECCCCCCH
Confidence 3444554555444 57899999999999999999998765433221 2367778888999999999988997530
Q ss_pred Cccccc-CCcceEEEEEccCC-cchHHHHHHHHH---HhhCCCeEE
Q 004461 571 TTQVSA-SNVSYTITVLFFGG-RDDREALACGAR---MAEHPGISF 611 (752)
Q Consensus 571 ~~~~~~-~~~~~~I~v~~~gg-~ddreAL~~a~~---ma~~~~~~l 611 (752)
..... ...-.+. +-++++ .+.+|-++.+++ +++..|+.+
T Consensus 88 -e~i~~Al~~G~ts-Vm~d~s~~~~~eni~~t~~v~~~a~~~gv~v 131 (281)
T PRK06806 88 -EKIKEALEIGFTS-VMFDGSHLPLEENIQKTKEIVELAKQYGATV 131 (281)
T ss_pred -HHHHHHHHcCCCE-EEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 00000 0000112 234444 345677766654 456667664
No 137
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=62.65 E-value=41 Score=32.86 Aligned_cols=96 Identities=14% Similarity=0.117 Sum_probs=57.8
Q ss_pred eEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHHHHHh
Q 004461 409 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAF 488 (752)
Q Consensus 409 rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 488 (752)
||++++.|-..+..++.++...... .+.++.++|+-.-.. . ..++-.+.++++
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~---~~~~v~~v~vd~g~~--~----------------------~~~~~~~~~~~~ 53 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPK---LKIRLIAAHVDHGLR--P----------------------ESDEEAEFVQQF 53 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH---cCCCEEEEEeCCCCC--h----------------------hHHHHHHHHHHH
Confidence 6899999999999999999887632 455678888742110 0 012223344455
Q ss_pred hhccceEEEEeEEec------CCCChH--------HHHHHHHHhcCccEEEecCCcc
Q 004461 489 QQLSRVSVRPMTAIS------SMSDMH--------EDICTTAESKRAAIIILPFHKH 531 (752)
Q Consensus 489 ~~~~~v~v~~~~~v~------~~~~~~--------~~I~~~A~e~~adLIImg~hg~ 531 (752)
++.-+++......-. ...++- +.+.+.|++.+++.|+.|.|..
T Consensus 54 ~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~ 110 (189)
T TIGR02432 54 CKKLNIPLEIKKVDVKALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHAD 110 (189)
T ss_pred HHHcCCCEEEEEecchhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccH
Confidence 555444443322110 001122 4577799999999999998843
No 138
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=62.25 E-value=24 Score=36.66 Aligned_cols=109 Identities=17% Similarity=0.075 Sum_probs=65.9
Q ss_pred EEccCCcchHHHHHHHHHHhh-CCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhcCCCCCeEEEE---E
Q 004461 585 VLFFGGRDDREALACGARMAE-HPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEE---R 660 (752)
Q Consensus 585 v~~~gg~ddreAL~~a~~ma~-~~~~~ltvl~v~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~v~~~e---~ 660 (752)
+++.=.|.|+-|++.|.|+.+ ..+.++|++.+-++.. ++.+.+.... .-++....+ .
T Consensus 31 v~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~a-----------------~~~lr~aLAm--GaDraili~d~~~ 91 (260)
T COG2086 31 VPLSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQA-----------------EEALREALAM--GADRAILITDRAF 91 (260)
T ss_pred CCcccChhhHHHHHHHHHhhccCCCceEEEEEecchhh-----------------HHHHHHHHhc--CCCeEEEEecccc
Confidence 456667889999999999999 6999999999975432 2223332211 222222222 2
Q ss_pred EecChHHHHHHHHhcc---CCCEEEEccCC----CccccccccCCCCCCccccchhhhc
Q 004461 661 LVRNTAETIAVIREVS---RCNLLLVGRMP----DGELALALSTRSDCLELGPVGSLLT 712 (752)
Q Consensus 661 ~v~~g~~~~~~i~~~~---~~DLiivG~~~----~~~~~~gl~~w~e~peLG~igd~la 712 (752)
.-.++..+..++.+.. ++|||+.|... .+.+=-.+.+|-..|.++.+-++-.
T Consensus 92 ~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~i~~ 150 (260)
T COG2086 92 AGADPLATAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSKIEI 150 (260)
T ss_pred cCccHHHHHHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEEEEEE
Confidence 2234444555554422 29999999997 2222234445555577777776664
No 139
>PRK08185 hypothetical protein; Provisional
Probab=61.04 E-value=33 Score=36.20 Aligned_cols=110 Identities=20% Similarity=0.185 Sum_probs=71.9
Q ss_pred cceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEecCCCCCC
Q 004461 492 SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGT 571 (752)
Q Consensus 492 ~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv~rg~~~~ 571 (752)
++..|-.+-... ..+...|++.|++.+..+|+.-+.+.-...+. .+........++++.||.+=-|+|.+-
T Consensus 11 ~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~------~~~~~~~~~a~~~~vPV~lHLDHg~~~- 81 (283)
T PRK08185 11 HQFAVGAFNVAD--SCFLRAVVEEAEANNAPAIIAIHPNELDFLGD------NFFAYVRERAKRSPVPFVIHLDHGATI- 81 (283)
T ss_pred cCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEeCcchhhhccH------HHHHHHHHHHHHCCCCEEEECCCCCCH-
Confidence 344444444444 57899999999999999999998876543332 277888889999999999988997530
Q ss_pred ccc--ccCCcceEEEEEccCCcch-HHHHHHHHHH---hhCCCeEEE
Q 004461 572 TQV--SASNVSYTITVLFFGGRDD-REALACGARM---AEHPGISFI 612 (752)
Q Consensus 572 ~~~--~~~~~~~~I~v~~~gg~dd-reAL~~a~~m---a~~~~~~lt 612 (752)
... .-...+.. +.++|+..+ +|=++.++++ |...|+.+.
T Consensus 82 e~i~~ai~~Gf~S--VM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE 126 (283)
T PRK08185 82 EDVMRAIRCGFTS--VMIDGSLLPYEENVALTKEVVELAHKVGVSVE 126 (283)
T ss_pred HHHHHHHHcCCCE--EEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 000 00001122 577887544 4556665554 466677663
No 140
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=60.80 E-value=1.9e+02 Score=35.19 Aligned_cols=70 Identities=11% Similarity=0.142 Sum_probs=49.7
Q ss_pred HHhhHHHHHHHhhccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHH-h-cCCChHHHHHHHHHhhhhHHH
Q 004461 271 SGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSL-S-FKVPLREALALGILMNTKGLV 342 (752)
Q Consensus 271 ~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~-~-~~~~~~~~~~lgl~l~~rG~v 342 (752)
..+.+++-.+..|++++...+.. .|..+..+++.++..-++++.+.++ + .+++|..++.+|.++++-.-+
T Consensus 75 teIvL~I~LFa~Gl~L~~~~Lrr--~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 75 SRILLCLQVFAVSVELPRKYMLK--HWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 56778888889999999998874 4555444444444445554555544 3 499999999999999886643
No 141
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=59.18 E-value=69 Score=34.28 Aligned_cols=73 Identities=29% Similarity=0.525 Sum_probs=37.8
Q ss_pred HHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhcc--ChhhHHhcCchhhHHHHHHHHHHHH
Q 004461 60 IAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLEL--DPKSLRQTGKKALGIAIAGISLPFA 137 (752)
Q Consensus 60 v~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~--d~~~l~~~~~~~~~i~~~~~~~~~~ 137 (752)
+|-++.|.+-||.....+++++..+|. =-+.+||...|++- .++.+|+.+ +.+...+++.|.+
T Consensus 184 lGgliIG~~~g~~g~~~i~pf~~~lF~------------G~L~lFLLeMGl~A~~rL~~l~~~g---~~li~Fgi~~Pli 248 (327)
T PF05982_consen 184 LGGLIIGFLAGPEGVESIKPFFVDLFK------------GVLCLFLLEMGLVAARRLRDLRKVG---WFLIAFGILMPLI 248 (327)
T ss_pred HHHHHHhheeCccchhhccchhhccHH------------HHHHHHHHHhhHHHHHhhHHHHhhh---HHHHHHHHHHHHH
Confidence 444445555556555555554443332 12445666777753 344455544 4455556667765
Q ss_pred ---HHHHHHHHhh
Q 004461 138 ---LGIGSSFLLR 147 (752)
Q Consensus 138 ---~~~~~~~~l~ 147 (752)
++..++++++
T Consensus 249 ~a~ig~~lg~~~g 261 (327)
T PF05982_consen 249 NALIGIGLGWLLG 261 (327)
T ss_pred HHHHHHHHHHHhC
Confidence 4455555554
No 142
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=58.92 E-value=3.5 Score=42.54 Aligned_cols=130 Identities=22% Similarity=0.266 Sum_probs=74.7
Q ss_pred HHhhHHHHHHHhhccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhh
Q 004461 271 SGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIG 350 (752)
Q Consensus 271 ~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~l~~~~ 350 (752)
++++=++-|..+|..+|++-+.... ..+++-..+-++- ..+++.+...++...|+..+|.+=+.-|-.++.+.+..
T Consensus 83 ~~i~PllIFmGvGAmTDFgpllanP---ktllLGaAAQ~GI-F~t~~~A~~lgf~~~eAasIgIIGGADGPTaIy~t~~L 158 (375)
T COG1883 83 SGIFPLLIFMGVGAMTDFGPLLANP---KTLLLGAAAQFGI-FATVFGALALGFTPKEAASIGIIGGADGPTAIYLTNKL 158 (375)
T ss_pred cCcccHHHHhccchhcccchhhcCc---HHHHhhhHHHhch-HHHHHHHHHhCCCHhhhhheeeeccCCCCceEEecccc
Confidence 5788888899999999998775421 1112222233332 33556677788889999999987666666655544321
Q ss_pred -hc-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhccccccccccCCCCCcceEEEEe
Q 004461 351 -KD-RKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACF 414 (752)
Q Consensus 351 -~~-~~~i~~~~~~~lv~~~lv~t~i~~pl~~~l~~~~~~~~~~~~~~~~i~~~~~~~e~rILv~v 414 (752)
.+ .+.+.-..|+-| + +.-++-||+.+.+-.+.+|..+ -.|.|+ -.+..||+.|+
T Consensus 159 AP~Ll~~iAvAAYSYM---A-LVPiIQPpimkaLTt~~ERkIr-M~qlR~-----Vsk~EkIlFPi 214 (375)
T COG1883 159 APELLGAIAVAAYSYM---A-LVPIIQPPIMKALTTKEERKIR-MTQLRT-----VSKREKILFPI 214 (375)
T ss_pred CHHHHHHHHHHHHHHH---H-HhhhcccHHHHHhcCHHHHHhh-hhcccc-----ccchhhhhhhH
Confidence 11 122222333333 2 2255678888887666555441 112222 23445788766
No 143
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=58.65 E-value=29 Score=36.79 Aligned_cols=55 Identities=11% Similarity=0.001 Sum_probs=39.7
Q ss_pred EEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhc
Q 004461 582 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKT 649 (752)
Q Consensus 582 ~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~ 649 (752)
+.++.|.||+|+--.|.++.+.-...+..+.++++.+.-.+. + ..+|.+++..++
T Consensus 21 ~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F~------------E-t~efrd~~a~~~ 75 (294)
T TIGR02039 21 RPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKFR------------E-MIAFRDHMVAKY 75 (294)
T ss_pred CcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCCH------------H-HHHHHHHHHHHh
Confidence 557889999999999999988765446778889887654333 1 346666666654
No 144
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=57.51 E-value=90 Score=30.36 Aligned_cols=95 Identities=16% Similarity=0.190 Sum_probs=53.3
Q ss_pred eEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHHHHHh
Q 004461 409 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAF 488 (752)
Q Consensus 409 rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 488 (752)
||+|++.|-..+-.++.++..+. +..+.++.++|+=.-... .+++-.+..+++
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~---~~~~~~~~~~~vdh~~~~------------------------~s~~~~~~v~~~ 53 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELR---RRNGIKLIAVHVDHGLRE------------------------ESDEEAEFVEEI 53 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHH---TTTTTEEEEEEEE-STSC------------------------CHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHH---HhcCCCeEEEEEecCCCc------------------------ccchhHHHHHHH
Confidence 68999998888999999999999 446778899998532211 122223344555
Q ss_pred hhccceEEEEeEEec---CCCCh--------HHHHHHHHHhcCccEEEecCCc
Q 004461 489 QQLSRVSVRPMTAIS---SMSDM--------HEDICTTAESKRAAIIILPFHK 530 (752)
Q Consensus 489 ~~~~~v~v~~~~~v~---~~~~~--------~~~I~~~A~e~~adLIImg~hg 530 (752)
.++.+++......-- +..+. .+.+.+.|++.+++.|++|.|.
T Consensus 54 ~~~~~i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~ 106 (182)
T PF01171_consen 54 CEQLGIPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHL 106 (182)
T ss_dssp HHHTT-EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BH
T ss_pred HHhcCCceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcC
Confidence 555445443332210 11111 1335568999999999999884
No 145
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=57.07 E-value=3.8 Score=45.14 Aligned_cols=72 Identities=24% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHH-HHHHHHHHHHHhhccCh
Q 004461 36 QICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLA-NLGLIFFMFLVGLELDP 114 (752)
Q Consensus 36 ~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~-~lgl~~llF~~Gle~d~ 114 (752)
++...+.+......+.+.+|.+.+++-.++|++++..-.+ + +-.+.++.+. .+-..++....|+++|+
T Consensus 214 ~~~~~l~~~~~~~~~a~~~g~s~~l~af~~Gl~~~~~~~~--~---------~~~~~l~~~~~~~~~~lfF~~iG~~~~~ 282 (380)
T PF00999_consen 214 FILLVLALILLLYGLAEILGLSGILGAFIAGLILSNSPFA--E---------RLEEKLESFWYGFFIPLFFVFIGMSLDF 282 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHhhhccccccccccccceeeeeehcccccccc--c---------hhhhcccchhhHHHhhHHhhhhcccccc
Confidence 3344444555567888889999999999999999821111 1 1122344444 66666788889999998
Q ss_pred hhHH
Q 004461 115 KSLR 118 (752)
Q Consensus 115 ~~l~ 118 (752)
+.+.
T Consensus 283 ~~l~ 286 (380)
T PF00999_consen 283 SSLF 286 (380)
T ss_dssp ----
T ss_pred cccc
Confidence 8874
No 146
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=54.86 E-value=24 Score=37.75 Aligned_cols=43 Identities=12% Similarity=0.030 Sum_probs=34.1
Q ss_pred eEEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeeccccc
Q 004461 581 YTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAI 623 (752)
Q Consensus 581 ~~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~ 623 (752)
.++++.|.||+|+--.|.++.+.....+..+.++++.+...+.
T Consensus 38 ~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~Fp 80 (312)
T PRK12563 38 SKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWKFR 80 (312)
T ss_pred CCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCCCH
Confidence 4678999999999999999988875556678899887655443
No 147
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=54.77 E-value=2.5e+02 Score=28.67 Aligned_cols=41 Identities=15% Similarity=0.055 Sum_probs=26.4
Q ss_pred HHhhccChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHhh
Q 004461 107 LVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLR 147 (752)
Q Consensus 107 ~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 147 (752)
..-+=-+.+.+||+++..+.--+.+.++.++.+..++.+++
T Consensus 79 AvPLY~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lg 119 (232)
T PRK04288 79 AIPLYKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQ 119 (232)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 33344567778888777776666666666666666666554
No 148
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=54.50 E-value=1.1e+02 Score=35.34 Aligned_cols=72 Identities=21% Similarity=0.410 Sum_probs=48.1
Q ss_pred HHhhHHHHHHHhhccccchhhchhhhHHHHHHHHHHHH-HHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHH
Q 004461 271 SGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTAC-LGKIVGTFVVSLSFKVPLREALALGILMNTKGLVEL 344 (752)
Q Consensus 271 ~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~~~~~~-~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l 344 (752)
..+++|......|+++|...+.. .+.....+.+... +.-.+.++...+..++|+..++.+|.++++-..+..
T Consensus 52 ~~~~Lp~lLF~~g~~~~~~~l~~--~~~~i~~la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 52 LFLFLPPLLFEAAMNTDLRELRE--NFRPIALIAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 35788999999999999998874 3333333333332 333333444444678999999999999988765543
No 149
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=54.03 E-value=2.1e+02 Score=27.49 Aligned_cols=48 Identities=25% Similarity=0.299 Sum_probs=27.3
Q ss_pred hhHHHHHHHHhhCccc---cCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 004461 58 RVIAEITGGILLGPSA---LGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGL 110 (752)
Q Consensus 58 ~iv~~IlaGiilGP~~---lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gl 110 (752)
.-+..+++|+++||.. .+......+.+++... .++-.|.++--|.+|+
T Consensus 34 ~~i~~vlaavllGP~~g~~~a~i~~ll~~l~~~g~-----~~afpg~~~~a~laGl 84 (160)
T TIGR02359 34 QHFVNVIAGVLLGPWYALAVAFIIGLLRNTLGLGT-----VLAFPGGMPGALLAGL 84 (160)
T ss_pred hHHHHHHHHHHHchHHHHHHHHHHHHHHHHhCCCc-----hHHHHHHHHHHHHHHH
Confidence 5688999999999942 2222233333332111 1233366667777777
No 150
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=52.94 E-value=70 Score=32.49 Aligned_cols=85 Identities=15% Similarity=0.110 Sum_probs=56.9
Q ss_pred EEEEeEEecCCC-ChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEecCCCCCCcc
Q 004461 495 SVRPMTAISSMS-DMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQ 573 (752)
Q Consensus 495 ~v~~~~~v~~~~-~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv~rg~~~~~~ 573 (752)
...+++.+.|.+ ...++|.+.+.+-..|.|++|- ..+.+......+.+++-++...||.++... ..+
T Consensus 15 ~~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIGG--------S~gvt~~~~~~~v~~ik~~~~lPvilfP~~-~~~--- 82 (240)
T COG1646 15 GKRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIGG--------SDGVTEENVDNVVEAIKERTDLPVILFPGS-PSG--- 82 (240)
T ss_pred cceEEEEeCcccccccHHHHHHHHHcCCCEEEECC--------cccccHHHHHHHHHHHHhhcCCCEEEecCC-hhc---
Confidence 345778888888 8999999999999999999993 222222337788888888999998655433 111
Q ss_pred cccCCcceEEEEEccCCcch
Q 004461 574 VSASNVSYTITVLFFGGRDD 593 (752)
Q Consensus 574 ~~~~~~~~~I~v~~~gg~dd 593 (752)
-....+.+++|..=..+|
T Consensus 83 --is~~aDavff~svLNS~n 100 (240)
T COG1646 83 --ISPYADAVFFPSVLNSDN 100 (240)
T ss_pred --cCccCCeEEEEEEecCCC
Confidence 111345666665444444
No 151
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=52.86 E-value=1.1e+02 Score=32.29 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=43.7
Q ss_pred ceEEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhc
Q 004461 580 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKT 649 (752)
Q Consensus 580 ~~~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~ 649 (752)
.++|+|.+.||+|+--+|.+..++.++ .++.+++|...-. ...+.+.+..+++....
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~~~-----------~~~~~~~~~~~~~~~~~ 77 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHGLR-----------GYSDQEAELVEKLCEKL 77 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCCCC-----------CccchHHHHHHHHHHHh
Confidence 369999999999999999999999888 8999999875321 12244567777777664
No 152
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=52.85 E-value=31 Score=36.86 Aligned_cols=39 Identities=26% Similarity=0.234 Sum_probs=34.1
Q ss_pred cceEEEEEccCCcchHHHHHHHHHHhhCCCe-EEEEEEEe
Q 004461 579 VSYTITVLFFGGRDDREALACGARMAEHPGI-SFIVIRFL 617 (752)
Q Consensus 579 ~~~~I~v~~~gg~ddreAL~~a~~ma~~~~~-~ltvl~v~ 617 (752)
.+.+|+|-|.||+|+--.|.++.+.|+..+- +++|++..
T Consensus 26 ~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD 65 (407)
T COG3969 26 TFPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFID 65 (407)
T ss_pred cCCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEc
Confidence 4579999999999999999999999988766 88888774
No 153
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=52.74 E-value=20 Score=40.45 Aligned_cols=59 Identities=22% Similarity=0.373 Sum_probs=44.1
Q ss_pred ChHHHHHHHHHhcCccEEEec---CCcccccCCccccccchhHHHHHHHhhcCCCceEEEecCCC
Q 004461 507 DMHEDICTTAESKRAAIIILP---FHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGL 568 (752)
Q Consensus 507 ~~~~~I~~~A~e~~adLIImg---~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv~rg~ 568 (752)
.-.++||++|+|+++|+|++| ||........+ ...++..-++-+..-||..=++-|.+.
T Consensus 39 ~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L---~~~i~lLRryClgdkP~~le~lSD~s~ 100 (646)
T KOG2310|consen 39 VTFEEILEIAQENDVDMILLGGDLFHENKPSRKTL---HRCLELLRRYCLGDKPVQLEILSDQSV 100 (646)
T ss_pred HHHHHHHHHHHhcCCcEEEecCcccccCCccHHHH---HHHHHHHHHHccCCCceeeEEecccce
Confidence 356899999999999999999 66554332222 233677777888899999999888753
No 154
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=52.72 E-value=46 Score=35.15 Aligned_cols=112 Identities=17% Similarity=0.201 Sum_probs=68.9
Q ss_pred cceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEecCCCCCC
Q 004461 492 SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGT 571 (752)
Q Consensus 492 ~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv~rg~~~~ 571 (752)
++..|-.+-..+ ..+...+++.|++.+...|+.-+.+.-...+ -..+........+++++||.+=-|+|.+-.
T Consensus 16 ~~yaV~AfNv~n--~e~~~avi~AAee~~sPvIlq~~~~~~~~~g-----~~~~~~~~~~~A~~~~VPValHLDH~~~~e 88 (284)
T PRK12857 16 GGYAVGAFNCNN--MEIVQAIVAAAEAEKSPVIIQASQGAIKYAG-----IEYISAMVRTAAEKASVPVALHLDHGTDFE 88 (284)
T ss_pred cCCeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEechhHhhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCCHH
Confidence 333444454444 4889999999999999999999876543322 123677788888999999999989975300
Q ss_pred c-ccccCCcceEEEEEccCCcch-HHHHHHH---HHHhhCCCeEEE
Q 004461 572 T-QVSASNVSYTITVLFFGGRDD-REALACG---ARMAEHPGISFI 612 (752)
Q Consensus 572 ~-~~~~~~~~~~I~v~~~gg~dd-reAL~~a---~~ma~~~~~~lt 612 (752)
. ...-...+.. |.+||+.-+ +|=++.. .++|...|+++-
T Consensus 89 ~i~~ai~~GftS--VM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVE 132 (284)
T PRK12857 89 QVMKCIRNGFTS--VMIDGSKLPLEENIALTKKVVEIAHAVGVSVE 132 (284)
T ss_pred HHHHHHHcCCCe--EEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 0 0000011223 367777543 4444443 444555666543
No 155
>COG3329 Predicted permease [General function prediction only]
Probab=52.45 E-value=1.9e+02 Score=30.66 Aligned_cols=71 Identities=14% Similarity=0.011 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCCHHHHHHHHHH
Q 004461 297 WGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILM 367 (752)
Q Consensus 297 ~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~l~~~~~~~~~i~~~~~~~lv~~ 367 (752)
+..+.+-+.+.++.-++..++..++.|++..|+..++-.-+.-..+.++.+...++.--+..+.|...++.
T Consensus 71 v~~~~~~~aL~~li~~ia~f~l~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~A~la 141 (372)
T COG3329 71 VLPVALGVALGFLIVFIAYFLLRKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMPAMLA 141 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 33444555666667777888888888999999999998888888888888877777666777776554333
No 156
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=52.44 E-value=48 Score=35.06 Aligned_cols=112 Identities=11% Similarity=0.057 Sum_probs=69.0
Q ss_pred cceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEecCCCCCC
Q 004461 492 SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGT 571 (752)
Q Consensus 492 ~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv~rg~~~~ 571 (752)
++..|-.+-... ..+...|++.|++.++..||.-+.+.-...+ ...+........+++++||.+=-|+|.+-.
T Consensus 16 ~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~~~~~g-----~~~~~~~~~~~a~~~~VPValHLDH~~~~e 88 (284)
T PRK12737 16 EGYAVPAFNIHN--LETLQVVVETAAELRSPVILAGTPGTFSYAG-----TDYIVAIAEVAARKYNIPLALHLDHHEDLD 88 (284)
T ss_pred cCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCccHHhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCCHH
Confidence 344444555444 4889999999999999999988776543322 123778888999999999999999975300
Q ss_pred c-ccccCCcceEEEEEccCCcch-HHHHHH---HHHHhhCCCeEEE
Q 004461 572 T-QVSASNVSYTITVLFFGGRDD-REALAC---GARMAEHPGISFI 612 (752)
Q Consensus 572 ~-~~~~~~~~~~I~v~~~gg~dd-reAL~~---a~~ma~~~~~~lt 612 (752)
. ...-...+.. |.+||+..+ +|-++. +.++|...|+.+-
T Consensus 89 ~i~~ai~~GftS--VMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVE 132 (284)
T PRK12737 89 DIKKKVRAGIRS--VMIDGSHLSFEENIAIVKEVVEFCHRYDASVE 132 (284)
T ss_pred HHHHHHHcCCCe--EEecCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 0 0000011222 467777543 344433 3445555565543
No 157
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=51.68 E-value=74 Score=30.80 Aligned_cols=96 Identities=14% Similarity=0.185 Sum_probs=57.8
Q ss_pred eEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHHHHHh
Q 004461 409 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAF 488 (752)
Q Consensus 409 rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 488 (752)
||++++.|-..+.-++.++...... .+.++.++|+-. +.. ..+.+..+.++++
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~---~~~~v~~v~id~--~~~----------------------~~~~~~~~~~~~~ 53 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPR---LGLRLVAVHVDH--GLR----------------------PESDEEAAFVADL 53 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH---cCCcEEEEEecC--CCC----------------------chHHHHHHHHHHH
Confidence 6899999999999999999888743 356678888842 110 0012233334444
Q ss_pred hhccceEEEEeE-EecC-CCC---------hHHHHHHHHHhcCccEEEecCCcc
Q 004461 489 QQLSRVSVRPMT-AISS-MSD---------MHEDICTTAESKRAAIIILPFHKH 531 (752)
Q Consensus 489 ~~~~~v~v~~~~-~v~~-~~~---------~~~~I~~~A~e~~adLIImg~hg~ 531 (752)
.+..+++.+... ...+ ... +.+.+.+.|++.++|.|+.|.|..
T Consensus 54 ~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~d 107 (185)
T cd01992 54 CAKLGIPLYILVVALAPKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHAD 107 (185)
T ss_pred HHHcCCcEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcH
Confidence 444445444331 1111 011 123455789999999999998743
No 158
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=51.40 E-value=1.3e+02 Score=32.63 Aligned_cols=95 Identities=14% Similarity=0.049 Sum_probs=54.0
Q ss_pred HHHHccc-CCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhc-cChhhHHhcC-chh
Q 004461 48 AFILRPL-RQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLE-LDPKSLRQTG-KKA 124 (752)
Q Consensus 48 ~~ll~rl-~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle-~d~~~l~~~~-~~~ 124 (752)
+.+++.+ ++|..+-.|+.|+++-- +|.+++-.+ ......-+++..--...+|+-+|+. +|++++.+.. .+.
T Consensus 195 g~l~~~~~~Ih~~v~mII~~vi~k~--~gllp~~i~----~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~ 268 (347)
T TIGR00783 195 GGLLKSFPGIPAYAFMILIAAALKA--FGLVPKEIE----EGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQF 268 (347)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHH--hCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhH
Confidence 3444444 78999999999999873 444432000 0111222233333334455557886 8999998877 444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Q 004461 125 LGIAIAGISLPFALGIGSSFLLRE 148 (752)
Q Consensus 125 ~~i~~~~~~~~~~~~~~~~~~l~~ 148 (752)
+.+.+.+++.-.+.++.++.+++.
T Consensus 269 vviiv~~Vlg~ii~s~lvGKllG~ 292 (347)
T TIGR00783 269 VVICLSVVVAMILGGAFLGKLMGM 292 (347)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCC
Confidence 444444444445555566666654
No 159
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=51.32 E-value=4.9e+02 Score=31.00 Aligned_cols=121 Identities=17% Similarity=0.180 Sum_probs=69.2
Q ss_pred HHhchhhhhhhccccccccccCCCCCcceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEE-EeeeccCCchhHHHH
Q 004461 381 AVYKPARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYAL-HLMELSERSSAILMV 459 (752)
Q Consensus 381 ~l~~~~~~~~~~~~~~~~i~~~~~~~e~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~L-hvvel~~~~~~~~~~ 459 (752)
.+|+--|||...-..|+ +|-+-. .-+||.=+++|..+..++++...+.+ .+. |++ ||. +.+..+..
T Consensus 537 LiyHQVRKYLL~ld~rk--dhVKfW-RPQILLlV~nPrss~~Lirf~N~LKK----ggL--YilGHV~-~gd~~~~~--- 603 (945)
T KOG1288|consen 537 LIYHQVRKYLLRLDVRK--DHVKFW-RPQILLLVSNPRSSCNLIRFCNDLKK----GGL--YILGHVI-VGDDFSAS--- 603 (945)
T ss_pred HHHHHHHHHHHhcchhh--hhcccc-cceEEEEecCCcccchHHHHHHhhcc----cce--EEEEEEE-eccccccc---
Confidence 45666677763111222 222222 23799999999999999999998883 344 777 554 43322210
Q ss_pred hhhhcCCCCCCCCCCCCCcchHHHHHHHhhhccceEEEEeEEecCCCChHHHHHHHHHh-----cCccEEEecCCcc
Q 004461 460 HKARRNGLPFWNRGRQSNPNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAES-----KRAAIIILPFHKH 531 (752)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e-----~~adLIImg~hg~ 531 (752)
. +..++...+.-++.+..+++.-.....+ .+...+|-++.+- .+.+.+|+|||..
T Consensus 604 ------~---------d~l~~q~~~W~s~vd~~~iKAFvelt~s--psir~Giq~Lir~SGLGgMKPNt~VlgF~d~ 663 (945)
T KOG1288|consen 604 ------M---------DELQQQQRAWLSFVDDAGIKAFVELTIS--PSIRWGIQHLIRLSGLGGMKPNTAVLGFYDL 663 (945)
T ss_pred ------c---------chhhHHHHHHHHHHHHhhhhhheeeccC--hhHHHHHHHHhhhcccCCcCCceEEEEeecC
Confidence 0 1122233334444444444433333444 3777787777664 5788999999864
No 160
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=50.68 E-value=96 Score=35.04 Aligned_cols=60 Identities=23% Similarity=0.190 Sum_probs=43.9
Q ss_pred ceEEEEEccCCcchHHHHHHHHHHh-hCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhcC
Q 004461 580 SYTITVLFFGGRDDREALACGARMA-EHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTS 650 (752)
Q Consensus 580 ~~~I~v~~~gg~ddreAL~~a~~ma-~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~ 650 (752)
.++|++.+.||+|+--.+.+..++. ..++.+++++++...-. .+.+.++++.+++..++.
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr-----------~~s~~~~~~~~~~~~~l~ 75 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLS-----------PNADSWVKHCEQVCQQWQ 75 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCC-----------cchHHHHHHHHHHHHHcC
Confidence 3689999999999988887777776 45688999999974322 122334577888877653
No 161
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=50.32 E-value=1.2e+02 Score=32.95 Aligned_cols=110 Identities=14% Similarity=0.117 Sum_probs=70.1
Q ss_pred cceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCC-CceEEEecCCCCC
Q 004461 492 SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAP-CSVGILIDRGLGG 570 (752)
Q Consensus 492 ~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~Ap-C~V~Ilv~rg~~~ 570 (752)
.+..|-.+-... ..+...|++.|++.+..+|+.-+.+.-..-+. ..+..+.....++++ +||++=.|+|.+-
T Consensus 14 ~~yAV~AfN~~n--~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~-----~~~~~~~~~~ae~~~~VPValHLDHg~~~ 86 (347)
T TIGR01521 14 FGYGVPAFNVNN--MEQMRAIMEAADKTDSPVILQASRGARSYAGA-----PFLRHLILAAIEEYPHIPVVMHQDHGNSP 86 (347)
T ss_pred cCceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEECCcchhhhCCH-----HHHHHHHHHHHHhCCCCcEEEECCCCCCH
Confidence 334444555444 57899999999999999999998876443331 237778888889997 9999999997530
Q ss_pred Cccc--ccCCcceEEEEEccCCcc--------hHHHHHHH---HHHhhCCCeEE
Q 004461 571 TTQV--SASNVSYTITVLFFGGRD--------DREALACG---ARMAEHPGISF 611 (752)
Q Consensus 571 ~~~~--~~~~~~~~I~v~~~gg~d--------dreAL~~a---~~ma~~~~~~l 611 (752)
... .-...+.. |.+||+.. -+|-++.. .++|...|+.+
T Consensus 87 -e~i~~Ai~~GFtS--VMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsV 137 (347)
T TIGR01521 87 -ATCQRAIQLGFTS--VMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASV 137 (347)
T ss_pred -HHHHHHHHcCCCE--EeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 000 00001222 47888852 35555444 44555566653
No 162
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=48.39 E-value=2.8e+02 Score=27.34 Aligned_cols=18 Identities=11% Similarity=0.477 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004461 235 VICLTLFVPPTFKWMARQ 252 (752)
Q Consensus 235 ~~~~~~v~~~~~~~~~~~ 252 (752)
....+++.+|+..|+.++
T Consensus 172 ~~ss~~ia~~l~~~l~~~ 189 (189)
T PF02355_consen 172 TYSSLFIARPLLYWLVKK 189 (189)
T ss_dssp HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 344567788888887653
No 163
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=47.97 E-value=2.5e+02 Score=28.24 Aligned_cols=74 Identities=11% Similarity=-0.001 Sum_probs=42.5
Q ss_pred CcchHHHHHHHhhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcC
Q 004461 477 NPNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHA 556 (752)
Q Consensus 477 ~~~~i~~~~~~~~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~A 556 (752)
....+.+.+++..++.+..+.....-. ....++.++.+.++++|-||+-.... + ... -+.++++
T Consensus 13 ~~~~~~~~i~~~~~~~g~~~~~~~~~~--~~~~~~~i~~~~~~~vdgiii~~~~~---~----------~~~-~~~~~~~ 76 (266)
T cd06278 13 FYSELLEALSRALQARGYQPLLINTDD--DEDLDAALRQLLQYRVDGVIVTSGTL---S----------SEL-AEECRRN 76 (266)
T ss_pred hHHHHHHHHHHHHHHCCCeEEEEcCCC--CHHHHHHHHHHHHcCCCEEEEecCCC---C----------HHH-HHHHhhc
Confidence 346677777777776666654433221 22345567777889999777632100 0 011 2445667
Q ss_pred CCceEEEecCC
Q 004461 557 PCSVGILIDRG 567 (752)
Q Consensus 557 pC~V~Ilv~rg 567 (752)
..|| |++++.
T Consensus 77 ~ipv-V~~~~~ 86 (266)
T cd06278 77 GIPV-VLINRY 86 (266)
T ss_pred CCCE-EEECCc
Confidence 8887 677774
No 164
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=47.70 E-value=3.1e+02 Score=27.68 Aligned_cols=108 Identities=12% Similarity=0.252 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHH
Q 004461 262 LVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGL 341 (752)
Q Consensus 262 l~~kl~~~~~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~ 341 (752)
+..-+.+-+-.+-.|+| =+...+. ..|..++.-++...+.-++.++..++.++.+.. +...+.+|..
T Consensus 51 l~~lLgPatVALAvPLY-------~~~~~l~--~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~----~~~Sl~pkSV 117 (215)
T PF04172_consen 51 LSFLLGPATVALAVPLY-------RQRRLLK--KNWIPILVGVLVGSLVSIFSAVLLARLLGLSPE----IILSLAPKSV 117 (215)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHHHHHh
Confidence 33334444444555555 1233333 345555566666666777788888888888654 3334688988
Q ss_pred HHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004461 342 VELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAV 382 (752)
Q Consensus 342 v~l~l~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~pl~~~l 382 (752)
..=+...+..+.|-...-+-...+++-++...+.+++++++
T Consensus 118 TtpiAi~is~~iGG~~sLta~~VvitGi~Ga~~g~~llk~~ 158 (215)
T PF04172_consen 118 TTPIAIEISEQIGGIPSLTAVFVVITGILGAVLGPPLLKLL 158 (215)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhHHHHhHHHHHhHc
Confidence 77777788888787766666666666666666666777664
No 165
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=47.42 E-value=64 Score=34.05 Aligned_cols=112 Identities=8% Similarity=0.021 Sum_probs=69.6
Q ss_pred cceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEecCCCCCC
Q 004461 492 SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGT 571 (752)
Q Consensus 492 ~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv~rg~~~~ 571 (752)
++..|-.+-... ..+...|++.|++.++.+|+.-+.+.-...+ ...+........+++++||.+=-|+|.+-.
T Consensus 14 ~~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~s~~~~~~~~-----~~~~~~~~~~~a~~~~VPValHLDHg~~~e 86 (282)
T TIGR01858 14 GGYAVPAFNIHN--LETIQAVVETAAEMRSPVILAGTPGTFKHAG-----TEYIVALCSAASTTYNMPLALHLDHHESLD 86 (282)
T ss_pred cCCeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEeCccHHhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCCHH
Confidence 334444454444 4889999999999999999998876643322 122778888999999999999989975300
Q ss_pred c-ccccCCcceEEEEEccCCcch-HHHHHH---HHHHhhCCCeEEE
Q 004461 572 T-QVSASNVSYTITVLFFGGRDD-REALAC---GARMAEHPGISFI 612 (752)
Q Consensus 572 ~-~~~~~~~~~~I~v~~~gg~dd-reAL~~---a~~ma~~~~~~lt 612 (752)
. ...-...+.. |.+||+.-+ +|-++. +.++|...|+.+-
T Consensus 87 ~i~~ai~~GFtS--VM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VE 130 (282)
T TIGR01858 87 DIRQKVHAGVRS--AMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVE 130 (282)
T ss_pred HHHHHHHcCCCE--EeecCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 0 0000001223 467777544 344443 3445555665543
No 166
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=45.98 E-value=3.3e+02 Score=27.49 Aligned_cols=86 Identities=13% Similarity=0.084 Sum_probs=48.5
Q ss_pred hhccChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCc
Q 004461 109 GLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTAD 188 (752)
Q Consensus 109 Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~ 188 (752)
-+-=+++.+||+++..+.--+.+.++.++.+..+++.++. ...+..+.+-=+...|+...+-+++|=
T Consensus 65 PLY~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl---------~~~~~~Sl~pkSVTtpiAi~is~~iGG---- 131 (215)
T PF04172_consen 65 PLYRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGL---------SPEIILSLAPKSVTTPIAIEISEQIGG---- 131 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc---------CHHHHHHHHHHHhhHHHHHHHHHHhCC----
Confidence 3334677888888887776677777777666666666653 123333333322334777777766662
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 004461 189 VGRMAMSAAAVNDVAAWIL 207 (752)
Q Consensus 189 ~g~l~l~~a~i~D~~~~~l 207 (752)
...++....+++-+++.++
T Consensus 132 ~~sLta~~VvitGi~Ga~~ 150 (215)
T PF04172_consen 132 IPSLTAVFVVITGILGAVL 150 (215)
T ss_pred hHHHHHHHHHHHhhHHHHh
Confidence 2234434444555444443
No 167
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=45.65 E-value=67 Score=33.94 Aligned_cols=111 Identities=10% Similarity=0.056 Sum_probs=68.5
Q ss_pred cceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEecCCCCCC
Q 004461 492 SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGT 571 (752)
Q Consensus 492 ~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv~rg~~~~ 571 (752)
++..+-.+-... ..+...|++.|++.+..+|+.-+.+.-..-+. ..+........+++++||.+=-|+|.+-
T Consensus 16 ~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~-----~~~~~~~~~~A~~~~VPV~lHLDHg~~~- 87 (284)
T PRK09195 16 GGYAVPAFNIHN--LETMQVVVETAAELHSPVIIAGTPGTFSYAGT-----EYLLAIVSAAAKQYHHPLALHLDHHEKF- 87 (284)
T ss_pred cCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcChhHHhhCCH-----HHHHHHHHHHHHHCCCCEEEECCCCCCH-
Confidence 333444444444 48899999999999999999988765433221 1267788889999999999988997530
Q ss_pred ccc--ccCCcceEEEEEccCCcch-HHHHHH---HHHHhhCCCeEEE
Q 004461 572 TQV--SASNVSYTITVLFFGGRDD-REALAC---GARMAEHPGISFI 612 (752)
Q Consensus 572 ~~~--~~~~~~~~I~v~~~gg~dd-reAL~~---a~~ma~~~~~~lt 612 (752)
... .-...+.. |.+||+.-+ +|=++. +.++|...|+.+-
T Consensus 88 e~i~~Ai~~GftS--VM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VE 132 (284)
T PRK09195 88 DDIAQKVRSGVRS--VMIDGSHLPFAQNISLVKEVVDFCHRFDVSVE 132 (284)
T ss_pred HHHHHHHHcCCCE--EEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 000 00001223 467777544 333333 4455566665443
No 168
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=45.34 E-value=1.8e+02 Score=27.22 Aligned_cols=100 Identities=16% Similarity=0.040 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCh---hHHHHHHHHhhCccccCchhhhhhccCCCCc-hHHHHHHHHHHHHHHHH
Q 004461 31 PLAILQICLVILLTRGLAFILRPLRQPR---VIAEITGGILLGPSALGRSERFLQAVFPPKS-QTVLDTLANLGLIFFMF 106 (752)
Q Consensus 31 ~~~l~~i~lil~~~~~~~~ll~rl~~P~---iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~-~~~l~~l~~lgl~~llF 106 (752)
..++.|+++++.+..+...+.+-+++|- ++|.++-=+.+. ++.... ..- ...--.+.++++.|+=-
T Consensus 7 ~~~l~ql~ill~~~~lGe~i~~ll~lPiPGsViGMlLL~l~L~---~~~vk~-------~~v~~~a~~LL~~m~LfFVPa 76 (141)
T PRK04125 7 YSFLHQAFIFAAIMLISNIIASFLPIPMPASVIGLVLLFVLLC---TKVVKL-------EQVESLGTALTNNIGFLFVPS 76 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH---hCCcCH-------HHHHHHHHHHHHHHHHHHhhh
Confidence 3567888888888877777777777653 344443222211 222210 000 01112345555555555
Q ss_pred HHhhccChhhHHhcCchhhHHHHHHHHHHHHHHH
Q 004461 107 LVGLELDPKSLRQTGKKALGIAIAGISLPFALGI 140 (752)
Q Consensus 107 ~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~ 140 (752)
.+|+=..++.+++++...+..-+.+.++.++...
T Consensus 77 gVGim~~~~ll~~~~~~Il~~ivvSTllvl~vtg 110 (141)
T PRK04125 77 GISVINSLGVMSQYPVQIIGVIIVATILLLACTG 110 (141)
T ss_pred HhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666667777777766665555555555544433
No 169
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=44.08 E-value=2.5e+02 Score=26.63 Aligned_cols=72 Identities=14% Similarity=0.093 Sum_probs=51.0
Q ss_pred HHHHhhccccchhhchhh-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhc
Q 004461 278 YFVSSGLKTNIATIQGLQ-SWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKD 352 (752)
Q Consensus 278 FFv~~Gl~~d~~~l~~~~-~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~l~~~~~~ 352 (752)
.=..+|.+++...+.... .+...+..++..++.-++..++..+..++++.+++ ++ ..|-|.-++.+...-.+
T Consensus 56 iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~-La--~~PGGl~~m~~~A~~~g 128 (156)
T TIGR03082 56 IGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLTGVDPLTAF-LA--TSPGGASEMAALAAELG 128 (156)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HH--hCCchHHHHHHHHHHhC
Confidence 346889999987776432 34445566666667778888889999999988875 34 57888888777665443
No 170
>COG0679 Predicted permeases [General function prediction only]
Probab=43.10 E-value=4.4e+02 Score=28.11 Aligned_cols=180 Identities=19% Similarity=0.174 Sum_probs=0.0
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHHHHcccCCCh--hHHHHHHHHhhCccc----cCchhhhhhccCCCCchHHHHH
Q 004461 22 GDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPR--VIAEITGGILLGPSA----LGRSERFLQAVFPPKSQTVLDT 95 (752)
Q Consensus 22 ~~~pl~~~~~~~l~~i~lil~~~~~~~~ll~rl~~P~--iv~~IlaGiilGP~~----lg~~~~~~~~lfp~~~~~~l~~ 95 (752)
|++-+.+ ..++.....+.......+.+.+-+... -....+--++--|.. +|..-...+.-+|..-.+..+.
T Consensus 121 G~~gl~~---~~i~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~ 197 (311)
T COG0679 121 GEKGLAY---AVIFLIIGLFLMFTLGVILLARSGGGTNKSLLSVLKKLLTNPLIIALILGLLLNLLGISLPAPLDTAVDL 197 (311)
T ss_pred CcchHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHhCcHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhccChhhHHhcCchhhHHHHH-HHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHhhccHHH
Q 004461 96 LANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIA-GISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPV 174 (752)
Q Consensus 96 l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~v 174 (752)
+++...-+-|+..|+.++....++...+....+.. -.++--+++..+.+.++.. ......+..++..-+++
T Consensus 198 l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~~~~~~~l~--------~~~~~v~vl~~a~P~A~ 269 (311)
T COG0679 198 LASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPLVALLVAKLLGLS--------GLALQVLVLLSAMPTAV 269 (311)
T ss_pred HHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHcCCC--------hHHHHHHHHHhhCcHHh
Q ss_pred HHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 004461 175 LARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAV 212 (752)
Q Consensus 175 v~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll~v~~ 212 (752)
..-++.+.--.+.+...-....+.+--++.+.......
T Consensus 270 ~~~v~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l 307 (311)
T COG0679 270 NAYVLARQYGGDPRLAASTILLSTLLSLLTLPLLILLL 307 (311)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
No 171
>PRK12569 hypothetical protein; Provisional
Probab=42.83 E-value=1.5e+02 Score=30.52 Aligned_cols=102 Identities=12% Similarity=0.134 Sum_probs=61.3
Q ss_pred HHHHHhhhccceEEEEeEEec-------CCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhc
Q 004461 483 VAFEAFQQLSRVSVRPMTAIS-------SMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKH 555 (752)
Q Consensus 483 ~~~~~~~~~~~v~v~~~~~v~-------~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ 555 (752)
.+++.+.+..+.+++....=+ .....++.|++..++.+.+|++++-.+. .-.+.-+.
T Consensus 96 gaL~~~~~~~g~~l~hVKPHGALYN~~~~d~~la~av~~ai~~~~~~l~l~~~~~s----------------~~~~~A~~ 159 (245)
T PRK12569 96 GALREFARAHGVRLQHVKPHGALYMHAARDEALARLLVEALARLDPLLILYCMDGS----------------ATERAARE 159 (245)
T ss_pred HHHHHHHHHcCCeeEEecCCHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecCCc----------------HHHHHHHH
Confidence 456777777777777654322 2235567799999999999999986432 22233333
Q ss_pred CCCceE--EEecCCCCCCcccccCCcceEEEEEccCCc-chHHHHHHHHHHhhCCCe
Q 004461 556 APCSVG--ILIDRGLGGTTQVSASNVSYTITVLFFGGR-DDREALACGARMAEHPGI 609 (752)
Q Consensus 556 ApC~V~--Ilv~rg~~~~~~~~~~~~~~~I~v~~~gg~-ddreAL~~a~~ma~~~~~ 609 (752)
.-.++. +|.||++.......+.... |+ |.+++++.+.+|+++-.+
T Consensus 160 ~Gl~~~~E~FADR~Y~~dG~Lv~R~~~---------gAvd~~~~~~~~~~m~~~g~v 207 (245)
T PRK12569 160 LGQPVVREFYADRDYDDSGSIVFTRRV---------GALDPQQVAAKVLRACREGKV 207 (245)
T ss_pred cCCCeEEEEEecCccCCCCCEecCCCC---------CCCCHHHHHHHHHHHHHcCCE
Confidence 323321 5789987422111111111 12 778899999999987544
No 172
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=42.80 E-value=71 Score=33.60 Aligned_cols=111 Identities=16% Similarity=0.144 Sum_probs=69.1
Q ss_pred cceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEecCCCCCC
Q 004461 492 SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGT 571 (752)
Q Consensus 492 ~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv~rg~~~~ 571 (752)
.+..|-.+-... ..+...+++.|++.++.+|+.-+.+.-...+ -..+.....+..+++++||.+-.|+|.+-
T Consensus 11 ~~yaV~AfN~~n--~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~-----~~~~~~~~~~~a~~~~VPV~lHLDH~~~~- 82 (276)
T cd00947 11 GGYAVGAFNINN--LETLKAILEAAEETRSPVILQISEGAIKYAG-----LELLVAMVKAAAERASVPVALHLDHGSSF- 82 (276)
T ss_pred CCceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCCH-
Confidence 344444454444 4799999999999999999988776543322 12377888889999999999999998530
Q ss_pred ccc--ccCCcceEEEEEccCCcch-HHHHHHH---HHHhhCCCeEEE
Q 004461 572 TQV--SASNVSYTITVLFFGGRDD-REALACG---ARMAEHPGISFI 612 (752)
Q Consensus 572 ~~~--~~~~~~~~I~v~~~gg~dd-reAL~~a---~~ma~~~~~~lt 612 (752)
... .-...+.. +.+||+..+ +|-++.. .++|...|+.+-
T Consensus 83 ~~i~~ai~~GftS--VMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VE 127 (276)
T cd00947 83 ELIKRAIRAGFSS--VMIDGSHLPFEENVAKTKEVVELAHAYGVSVE 127 (276)
T ss_pred HHHHHHHHhCCCE--EEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 000 00001223 366777543 4555444 344555565543
No 173
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=41.68 E-value=91 Score=32.99 Aligned_cols=110 Identities=7% Similarity=0.020 Sum_probs=67.5
Q ss_pred cceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEecCCCCCC
Q 004461 492 SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGT 571 (752)
Q Consensus 492 ~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv~rg~~~~ 571 (752)
++..|-.+-... ..+...|++.|++.+..+|+.-+.+.-..-+ ...+........+++++||.+=.|+|.+-
T Consensus 16 ~~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~s~~~~~~~~-----~~~~~~~~~~~a~~~~VPValHLDHg~~~- 87 (286)
T PRK12738 16 NGYAVPAFNIHN--AETIQAILEVCSEMRSPVILAGTPGTFKHIA-----LEEIYALCSAYSTTYNMPLALHLDHHESL- 87 (286)
T ss_pred CCceEEEEEeCC--HHHHHHHHHHHHHHCCCEEEEcCcchhhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCCH-
Confidence 333444444444 5889999999999999999997765532212 22367888899999999999999997530
Q ss_pred ccc--ccCCcceEEEEEccCCcch-HHHHHHH---HHHhhCCCeEE
Q 004461 572 TQV--SASNVSYTITVLFFGGRDD-REALACG---ARMAEHPGISF 611 (752)
Q Consensus 572 ~~~--~~~~~~~~I~v~~~gg~dd-reAL~~a---~~ma~~~~~~l 611 (752)
... .-...+.. |.+||+..+ +|-++.. .++|...|+.+
T Consensus 88 e~i~~ai~~GFtS--VM~DgS~lp~eeNi~~T~evv~~Ah~~gv~V 131 (286)
T PRK12738 88 DDIRRKVHAGVRS--AMIDGSHFPFAENVKLVKSVVDFCHSQDCSV 131 (286)
T ss_pred HHHHHHHHcCCCe--EeecCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 000 00001223 467777544 4444443 34455555544
No 174
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=39.56 E-value=1.8e+02 Score=30.20 Aligned_cols=39 Identities=13% Similarity=0.238 Sum_probs=30.2
Q ss_pred ceEEEEEccCCcchHHHHHHHHHHhhCC--CeEEEEEEEee
Q 004461 580 SYTITVLFFGGRDDREALACGARMAEHP--GISFIVIRFLL 618 (752)
Q Consensus 580 ~~~I~v~~~gg~ddreAL~~a~~ma~~~--~~~ltvl~v~~ 618 (752)
..+|++++.||+|+--.|.++.++.+.. +.++..+++..
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~ 69 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQ 69 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecC
Confidence 4589999999999988888888877654 45777777653
No 175
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=39.49 E-value=1e+02 Score=33.53 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=51.7
Q ss_pred cceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCccccc-CCc-cccc--------cchhHHHHHHHhhcCCCceE
Q 004461 492 SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRL-DGS-LETT--------RSDFRWVNQRVLKHAPCSVG 561 (752)
Q Consensus 492 ~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~-~g~-~~~~--------~~~~gsv~~~Vl~~ApC~V~ 561 (752)
.+..|-.+-... ..+...|++.|++.+...||.-+.+.... .+. ++.. ...+........+++++||+
T Consensus 14 ~~yAV~AfN~~n--~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPVa 91 (345)
T cd00946 14 NGFAIPAVNCTS--SSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYGVPVV 91 (345)
T ss_pred CCceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEE
Confidence 333443444433 47889999999999999999998774322 111 0000 00267778889999999999
Q ss_pred EEecCCCC
Q 004461 562 ILIDRGLG 569 (752)
Q Consensus 562 Ilv~rg~~ 569 (752)
+=.|+|..
T Consensus 92 lHLDHg~~ 99 (345)
T cd00946 92 LHTDHCAK 99 (345)
T ss_pred EECCCCCC
Confidence 98899754
No 176
>COG2035 Predicted membrane protein [Function unknown]
Probab=38.26 E-value=4.9e+02 Score=27.25 Aligned_cols=47 Identities=26% Similarity=0.475 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhC--ccccCchh
Q 004461 30 LPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLG--PSALGRSE 78 (752)
Q Consensus 30 ~~~~l~~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGiilG--P~~lg~~~ 78 (752)
.|+..--+..+..+++++.++++. .|.++-.-.+|+++| |+.++.++
T Consensus 59 i~l~~G~~~~i~~~a~ii~~ll~~--yp~~t~~fF~GlI~~sVp~llk~i~ 107 (276)
T COG2035 59 IPLGIGMLLGIFLFAKIIEYLLEN--YPVPTLAFFAGLILGSVPSLLKEIN 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555666677777777765 677788888999998 56555443
No 177
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=37.60 E-value=4.6e+02 Score=26.77 Aligned_cols=91 Identities=16% Similarity=0.009 Sum_probs=53.1
Q ss_pred EeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEecCCCCCCcccccC
Q 004461 498 PMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQVSAS 577 (752)
Q Consensus 498 ~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv~rg~~~~~~~~~~ 577 (752)
..+.+.|.+...++..+.+.+..+|.|++|-.- .+..+-.+.+.+-+..+.||.++... .. +. .
T Consensus 10 h~~liDPdK~~~~~~~~~~~~~gtDai~VGGS~----------~~~~~d~vv~~ik~~~~lPvilfPg~-~~---~v--s 73 (230)
T PF01884_consen 10 HATLIDPDKPNPEEALEAACESGTDAIIVGGSD----------TGVTLDNVVALIKRVTDLPVILFPGS-PS---QV--S 73 (230)
T ss_dssp EEEEE-TTSS-HHHHHHHHHCTT-SEEEEE-ST----------HCHHHHHHHHHHHHHSSS-EEEETST-CC---G----
T ss_pred eEEEECCCCCCcHHHHHHHHhcCCCEEEECCCC----------CccchHHHHHHHHhcCCCCEEEeCCC-hh---hc--C
Confidence 567788988889999999999999999999431 11225556666666688887554322 21 11 2
Q ss_pred CcceEEEEEccCCcch--------HHHHHHHHHHh
Q 004461 578 NVSYTITVLFFGGRDD--------REALACGARMA 604 (752)
Q Consensus 578 ~~~~~I~v~~~gg~dd--------reAL~~a~~ma 604 (752)
...+.+++|..-..++ .++....+++.
T Consensus 74 ~~aDail~~svlNs~n~~~iig~~~~aa~~~~~~~ 108 (230)
T PF01884_consen 74 PGADAILFPSVLNSRNPYWIIGAQVEAAPLIKKLG 108 (230)
T ss_dssp TTSSEEEEEEETTBSSTTTTTHHHHHHHHHCHHHH
T ss_pred cCCCEEEEEEEecCCCcchHhhHHHHHHHHHHhhc
Confidence 2345677665554444 34555555555
No 178
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=37.58 E-value=1.1e+02 Score=33.23 Aligned_cols=112 Identities=16% Similarity=0.146 Sum_probs=70.7
Q ss_pred cceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCC-CceEEEecCCCCC
Q 004461 492 SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAP-CSVGILIDRGLGG 570 (752)
Q Consensus 492 ~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~Ap-C~V~Ilv~rg~~~ 570 (752)
.+..|-.+-... ..+...|++.|++.++.+|+.-+.+....-+. ..+........++++ +||.+=.|+|.+-
T Consensus 16 ~~yaV~AfN~~n--~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~-----~~~~~~v~~~ae~~~~VPVaLHLDHg~~~ 88 (347)
T PRK13399 16 NGYGVPAFNVNN--MEQILAIMEAAEATDSPVILQASRGARKYAGD-----AMLRHMVLAAAEMYPDIPICLHQDHGNSP 88 (347)
T ss_pred CCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEECCcchhhhCCH-----HHHHHHHHHHHHhcCCCcEEEECCCCCCH
Confidence 344444554444 47899999999999999999998876544332 227778888888996 9999999997530
Q ss_pred Cc-ccccCCcceEEEEEccCCcc--------hHHHHHHHH---HHhhCCCeEEE
Q 004461 571 TT-QVSASNVSYTITVLFFGGRD--------DREALACGA---RMAEHPGISFI 612 (752)
Q Consensus 571 ~~-~~~~~~~~~~I~v~~~gg~d--------dreAL~~a~---~ma~~~~~~lt 612 (752)
.. ...-...+.. |.+||+.. -+|-++..+ ++|...|+.+-
T Consensus 89 e~i~~Ai~~GFtS--VMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVE 140 (347)
T PRK13399 89 ATCQSAIRSGFTS--VMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVE 140 (347)
T ss_pred HHHHHHHhcCCCE--EEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 00 0000011223 47888855 355555544 44555665544
No 179
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=36.57 E-value=1.2e+02 Score=32.39 Aligned_cols=112 Identities=14% Similarity=0.148 Sum_probs=69.9
Q ss_pred cceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCC-CceEEEecCCCCC
Q 004461 492 SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAP-CSVGILIDRGLGG 570 (752)
Q Consensus 492 ~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~Ap-C~V~Ilv~rg~~~ 570 (752)
++..|-.+-... ..+..+|++.|++.+..+|+.-+.+....-+. ..+........++++ .||.+=.|+|.+-
T Consensus 15 ~~yaV~AfN~~n--~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~-----~~~~~~~~~~a~~~~~VPValHLDHg~~~ 87 (307)
T PRK05835 15 EGYGVGAFNFVN--FEMLNAIFEAGNEENSPLFIQASEGAIKYMGI-----DMAVGMVKIMCERYPHIPVALHLDHGTTF 87 (307)
T ss_pred CCceEEEEEECC--HHHHHHHHHHHHHHCCCEEEEcCccHHhhCCh-----HHHHHHHHHHHHhcCCCeEEEECCCCCCH
Confidence 344454555544 48899999999999999999988765433221 226777888889997 9999988997530
Q ss_pred Cc-ccccCCcceEEEEEccCCcc-hHHHHHHH---HHHhhCCCeEEE
Q 004461 571 TT-QVSASNVSYTITVLFFGGRD-DREALACG---ARMAEHPGISFI 612 (752)
Q Consensus 571 ~~-~~~~~~~~~~I~v~~~gg~d-dreAL~~a---~~ma~~~~~~lt 612 (752)
.. ...-...+.. |.|||+.. -+|=++.. .++|...|+.+-
T Consensus 88 e~i~~ai~~GftS--VM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VE 132 (307)
T PRK05835 88 ESCEKAVKAGFTS--VMIDASHHAFEENLELTSKVVKMAHNAGVSVE 132 (307)
T ss_pred HHHHHHHHcCCCE--EEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 00 0000001223 47888873 35555444 445555665543
No 180
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=36.04 E-value=1.5e+02 Score=30.09 Aligned_cols=40 Identities=15% Similarity=-0.083 Sum_probs=30.3
Q ss_pred eEEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeeccccc
Q 004461 581 YTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAI 623 (752)
Q Consensus 581 ~~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~ 623 (752)
.++++.+.||+|+--.|.++.+..+ + .+.++.+.+...+.
T Consensus 26 ~~~~~s~S~Gkds~VlL~l~~~~~~-~--~i~vv~vDTg~~fp 65 (226)
T TIGR02057 26 HGLVQTSAFGIQALVTLHLLSSISE-P--MIPVIFIDTLYHFP 65 (226)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhC-C--CCCEEEEeCCCCCH
Confidence 4789999999999999999988762 2 36677777655443
No 181
>PRK01658 holin-like protein; Validated
Probab=35.90 E-value=3.4e+02 Score=24.76 Aligned_cols=99 Identities=18% Similarity=0.107 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCh---hHHHHHH--HHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHH
Q 004461 31 PLAILQICLVILLTRGLAFILRPLRQPR---VIAEITG--GILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFM 105 (752)
Q Consensus 31 ~~~l~~i~lil~~~~~~~~ll~rl~~P~---iv~~Ila--GiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~ll 105 (752)
..++.|+.+++.+..+...+.+-+++|- ++|.++- ....|..-..+++ ...--.++++++.|.=
T Consensus 4 ~~~l~~l~il~~~~~~G~~i~~~l~lpiPGsViGmlLL~~~L~~~~ik~~~v~-----------~~a~~Ll~~m~llFVP 72 (122)
T PRK01658 4 VKLLVQIALLYVFALVGTWIQEQLHLPIPGSIIGIFLLLLLLSFKILKLKWIE-----------LGAETLLAELPLFFIP 72 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCCcCHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 3567888888877777777777666653 3444432 1112211111111 1112234555665555
Q ss_pred HHHhhccChhhHHhcCchhhHHHHHHHHHHHHHHH
Q 004461 106 FLVGLELDPKSLRQTGKKALGIAIAGISLPFALGI 140 (752)
Q Consensus 106 F~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~ 140 (752)
-.+|+=-..+.+++++.+.+..-+.+.++.++...
T Consensus 73 a~VGi~~~~~ll~~~~~~il~~ivvsT~l~l~vtg 107 (122)
T PRK01658 73 SAVGVMNYGDFLSSKGISLFLVVVISTFVVMIVTG 107 (122)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677677777777776666666666655555443
No 182
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=35.82 E-value=68 Score=29.77 Aligned_cols=60 Identities=22% Similarity=0.214 Sum_probs=45.0
Q ss_pred CChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcC-CCceEEEecCCC
Q 004461 506 SDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHA-PCSVGILIDRGL 568 (752)
Q Consensus 506 ~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~A-pC~V~Ilv~rg~ 568 (752)
....+.|.+++++++++.||+|...+. +|..+......+..++++-++. ++|| .++|-.+
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~--~G~~~~~~~~v~~f~~~L~~~~~~ipV-~~~DEr~ 97 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNM--DGSESEQARRVRKFAEELKKRFPGIPV-ILVDERL 97 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBC--TSSC-CCHHHHHHHHHHHHHHH-TSEE-EEEECSC
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCccc--CCCccHHHHHHHHHHHHHHHhcCCCcE-EEECCCh
Confidence 578899999999999999999976432 3443333344788888888886 9998 6777644
No 183
>PF06939 DUF1286: Protein of unknown function (DUF1286); InterPro: IPR009705 This entry is represented by Sulfolobus virus STSV1, Orf8. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical archaeal proteins of around 120 residues in length. All members of this family seem to be Sulfolobus species specific. The function of this family is unknown.
Probab=35.65 E-value=75 Score=28.22 Aligned_cols=58 Identities=24% Similarity=0.307 Sum_probs=32.0
Q ss_pred CCCCcccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCcc
Q 004461 15 TSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPS 72 (752)
Q Consensus 15 ~~~~~~~~~~pl~~~~~~~l~~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGiilGP~ 72 (752)
+..|.-.-..|++|++|.-.+-=.+..+-..++-.++....--.+.-.++.|++.||+
T Consensus 53 ~~~g~i~~RTPlTHT~pRSv~WGli~slp~i~~l~~~~~~~~~~il~~Ll~Gvl~GPS 110 (114)
T PF06939_consen 53 TRYGYIPVRTPLTHTLPRSVLWGLIPSLPLIILLYYYYGYFNYIILLALLSGVLVGPS 110 (114)
T ss_pred cCCCcceecCCCccCcchhhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhhhccchH
Confidence 3445555688999999854331111111111122223333445566778899999996
No 184
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=35.43 E-value=1.2e+02 Score=32.93 Aligned_cols=112 Identities=16% Similarity=0.147 Sum_probs=70.3
Q ss_pred cceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCC-CceEEEecCCCCC
Q 004461 492 SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAP-CSVGILIDRGLGG 570 (752)
Q Consensus 492 ~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~Ap-C~V~Ilv~rg~~~ 570 (752)
.+..|-.+-... ..+...|++.|++.++.+|+.-+.+.....+. ..+..+.....++++ +||.+=.|+|.+-
T Consensus 16 ~~yAVgAfN~~n--~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~-----~~~~~~~~~~a~~~~~VPValHLDHg~~~ 88 (347)
T PRK09196 16 HGYGVPAFNVNN--LEQVQAIMEAADETDSPVILQASAGARKYAGE-----PFLRHLILAAVEEYPHIPVVMHQDHGNSP 88 (347)
T ss_pred cCceEEEeeeCC--HHHHHHHHHHHHHhCCCEEEECCccHhhhCCH-----HHHHHHHHHHHHhCCCCcEEEECCCCCCH
Confidence 344444555444 58999999999999999999998876443332 227788888888997 9999999997530
Q ss_pred Cc-ccccCCcceEEEEEccCCcc--------hHHHHHHH---HHHhhCCCeEEE
Q 004461 571 TT-QVSASNVSYTITVLFFGGRD--------DREALACG---ARMAEHPGISFI 612 (752)
Q Consensus 571 ~~-~~~~~~~~~~I~v~~~gg~d--------dreAL~~a---~~ma~~~~~~lt 612 (752)
.. ...-...+.. |.+||+.. -+|-++.. .++|...|+.+-
T Consensus 89 e~i~~ai~~GftS--VMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VE 140 (347)
T PRK09196 89 ATCQRAIQLGFTS--VMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVE 140 (347)
T ss_pred HHHHHHHHcCCCE--EEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 00 0000001222 47888843 34444443 445555666544
No 185
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=35.25 E-value=1.2e+02 Score=30.83 Aligned_cols=108 Identities=18% Similarity=0.243 Sum_probs=65.1
Q ss_pred HHHHHhhhccceEEEEeEEec-------CCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhc
Q 004461 483 VAFEAFQQLSRVSVRPMTAIS-------SMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKH 555 (752)
Q Consensus 483 ~~~~~~~~~~~v~v~~~~~v~-------~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ 555 (752)
-+++.+.+..+..+++...-+ .....++.|++...+.+.+|++|+.-+..-.+. ..+..+...++-.-.+
T Consensus 93 GAL~a~~~a~G~~~~hVKpHGALYN~~a~D~~la~av~~av~~~dp~L~l~~Lags~~~~~---a~~~GL~~~~EvFADR 169 (252)
T COG1540 93 GALQAFARAQGGVVQHVKPHGALYNQAAKDRALADAVAEAVAAFDPSLILMGLAGSELLRA---AKRAGLPVAEEVFADR 169 (252)
T ss_pred HHHHHHHHhcCCeEEEecccHHHHHHhhcCHHHHHHHHHHHHHhCCCceEEecCcHHHHHH---HHHcCchhHHHHhccc
Confidence 356777777677766654322 112445669999999999999999876522110 1111244444444444
Q ss_pred CCCceEEEecCCCCCCcccccCCcceEEEEEccCCcchHHHHHHHHHHhhCCCeE
Q 004461 556 APCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGIS 610 (752)
Q Consensus 556 ApC~V~Ilv~rg~~~~~~~~~~~~~~~I~v~~~gg~ddreAL~~a~~ma~~~~~~ 610 (752)
+=-|=|-||.|+..+ -+ -.|.+++++.+.+|++.-.++
T Consensus 170 ~Y~~dG~Lv~R~~pg-----------A~------i~d~~~a~~qvl~m~~~g~v~ 207 (252)
T COG1540 170 AYQPDGTLVPRSLPG-----------AV------IHDEEEALAQVLQMVREGKVT 207 (252)
T ss_pred ccCCCCcEecCCCCC-----------cc------ccCHHHHHHHHHHHHhcCceE
Confidence 444445555553321 11 168899999999999986543
No 186
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=34.90 E-value=1.5e+02 Score=32.36 Aligned_cols=89 Identities=12% Similarity=0.104 Sum_probs=58.7
Q ss_pred cchHHHHHHHhhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCccccc-CCc-ccc---------ccchhH
Q 004461 478 PNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRL-DGS-LET---------TRSDFR 546 (752)
Q Consensus 478 ~~~i~~~~~~~~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~-~g~-~~~---------~~~~~g 546 (752)
.+++.+.++...+ .+..|-.+-... ..+...+++.|++.+..+|+.-+.+.-.. .+. ++. +...+.
T Consensus 12 ~~~~~~lL~~A~~-~~yAVgAfNv~n--~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 88 (357)
T TIGR01520 12 GDDVHKLFQYAKE-NNFAIPAINCTS--SSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGA 88 (357)
T ss_pred HHHHHHHHHHHHH-CCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHH
Confidence 4555555544333 334444444444 57899999999999999999998876432 210 110 011156
Q ss_pred HHHHHHhhcCCCceEEEecCCCC
Q 004461 547 WVNQRVLKHAPCSVGILIDRGLG 569 (752)
Q Consensus 547 sv~~~Vl~~ApC~V~Ilv~rg~~ 569 (752)
.......+++++||.+=.|+|.+
T Consensus 89 ~~v~~~Ae~a~VPValHLDHg~~ 111 (357)
T TIGR01520 89 HHVHSIAEHYGVPVVLHTDHCAK 111 (357)
T ss_pred HHHHHHHHHCCCCEEEECCCCCC
Confidence 67788899999999999999764
No 187
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=34.51 E-value=3.8e+02 Score=32.71 Aligned_cols=40 Identities=5% Similarity=0.260 Sum_probs=26.0
Q ss_pred ceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeecc
Q 004461 408 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELS 450 (752)
Q Consensus 408 ~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~ 450 (752)
.+|-+-.-+-+.-..++.++..++ .+..+.+.+++.++..
T Consensus 615 ~~v~~lF~GG~DDrEALa~~~rm~---~~~~v~lTVirf~~~~ 654 (769)
T KOG1650|consen 615 YKVVVLFLGGKDDREALALAKRMA---ENPRVTLTVIRFFPDE 654 (769)
T ss_pred eEEEEEecCChhhHHHHHHHHHHh---hCCceEEEEEEeeccc
Confidence 343333334444455889999998 4577888888888643
No 188
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=34.14 E-value=1.5e+02 Score=31.47 Aligned_cols=111 Identities=12% Similarity=0.153 Sum_probs=69.0
Q ss_pred cceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCccccc-CCccccccchhHHHHHHHhhcC--CCceEEEecCCC
Q 004461 492 SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRL-DGSLETTRSDFRWVNQRVLKHA--PCSVGILIDRGL 568 (752)
Q Consensus 492 ~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~-~g~~~~~~~~~gsv~~~Vl~~A--pC~V~Ilv~rg~ 568 (752)
.+..|-.+-... ..+...|++.|++.++.+|+.-+.+.-.. .+ -..+........+++ .+||.+--|+|.
T Consensus 16 ~~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g-----~~~~~~~~~~~a~~~~~~VPV~lHLDHg~ 88 (288)
T TIGR00167 16 EGYAIPAFNINN--LETINAVLEAAAEEKSPVIIQFSNGAAKYIAG-----LGAISAMVKAMSEAYPYGVPVALHLDHGA 88 (288)
T ss_pred CCceEEEEEECC--HHHHHHHHHHHHHHCCCEEEECCcchhhccCC-----HHHHHHHHHHHHHhccCCCcEEEECCCCC
Confidence 333444554444 47889999999999999999987765433 22 123777888888999 899999889975
Q ss_pred CCCccc--ccCCcceEEEEEccCCcch-HHHHHHHH---HHhhCCCeEEE
Q 004461 569 GGTTQV--SASNVSYTITVLFFGGRDD-REALACGA---RMAEHPGISFI 612 (752)
Q Consensus 569 ~~~~~~--~~~~~~~~I~v~~~gg~dd-reAL~~a~---~ma~~~~~~lt 612 (752)
+- ... .-...+.. +.+||+..+ +|-++..+ ++|...|+.+-
T Consensus 89 ~~-e~i~~ai~~GftS--VMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VE 135 (288)
T TIGR00167 89 SE-EDCAQAVKAGFSS--VMIDGSHEPFEENIELTKKVVERAHKMGVSVE 135 (288)
T ss_pred CH-HHHHHHHHcCCCE--EEecCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 30 000 00001223 467777544 45554443 44555566544
No 189
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=33.61 E-value=2.6e+02 Score=26.80 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=27.4
Q ss_pred eEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEee
Q 004461 409 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLM 447 (752)
Q Consensus 409 rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvv 447 (752)
||++++.|-..+..++.++...... ..-+..++++|+-
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~-~~~~~~~~~~~~d 38 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRR-YPYGFELEALTVD 38 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhh-cCCCeEEEEEEEE
Confidence 6888998888888888888877633 1125667777774
No 190
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=33.60 E-value=2.1e+02 Score=30.25 Aligned_cols=109 Identities=17% Similarity=0.165 Sum_probs=65.8
Q ss_pred ceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCC-CceEEEecCCCCCC
Q 004461 493 RVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAP-CSVGILIDRGLGGT 571 (752)
Q Consensus 493 ~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~Ap-C~V~Ilv~rg~~~~ 571 (752)
+..|-.+-..+ ..+.+.+++.|++.++..|+.-+.+.-...+. -..+......+.++++ .||.+=-|+|.. .
T Consensus 15 ~yav~Afn~~n--~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~----~~~~~~~~~~~a~~~~~vpv~lhlDH~~~-~ 87 (282)
T TIGR01859 15 GYAVGAFNFNN--LEWTQAILEAAEEENSPVIIQVSEGAIKYMGG----YKMAVAMVKTLIERMSIVPVALHLDHGSS-Y 87 (282)
T ss_pred CceEEEEEECC--HHHHHHHHHHHHHhCCCEEEEcCcchhhccCc----HHHHHHHHHHHHHHCCCCeEEEECCCCCC-H
Confidence 33444454444 57899999999999999999988766443221 1237777888889998 898776677642 0
Q ss_pred cccc--cCCcceEEEEEccCCcch-HHHHHHHHH---HhhCCCeE
Q 004461 572 TQVS--ASNVSYTITVLFFGGRDD-REALACGAR---MAEHPGIS 610 (752)
Q Consensus 572 ~~~~--~~~~~~~I~v~~~gg~dd-reAL~~a~~---ma~~~~~~ 610 (752)
.... -...+ .. +-++++..+ +|-++.+++ ++...|++
T Consensus 88 e~i~~ai~~Gf-~s-Vmid~s~l~~~eni~~t~~v~~~a~~~gv~ 130 (282)
T TIGR01859 88 ESCIKAIKAGF-SS-VMIDGSHLPFEENLALTKKVVEIAHAKGVS 130 (282)
T ss_pred HHHHHHHHcCC-CE-EEECCCCCCHHHHHHHHHHHHHHHHHcCCE
Confidence 0000 00011 11 456666444 445555544 44666764
No 191
>PRK05406 LamB/YcsF family protein; Provisional
Probab=33.57 E-value=3.1e+02 Score=28.32 Aligned_cols=105 Identities=12% Similarity=0.147 Sum_probs=61.8
Q ss_pred HHHHHhhhccceEEEEeEEec-------CCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhc
Q 004461 483 VAFEAFQQLSRVSVRPMTAIS-------SMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKH 555 (752)
Q Consensus 483 ~~~~~~~~~~~v~v~~~~~v~-------~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ 555 (752)
.+++.+.+..+.+++...-=+ .....++.|++..++.+.+|++++-.+ |.-++..+.
T Consensus 93 gAL~~~a~~~g~~l~hVKPHGALYN~~~~d~~~a~av~~ai~~~~~~l~l~~~~~----------------s~~~~~A~~ 156 (246)
T PRK05406 93 GALQAIARAAGGRVSHVKPHGALYNMAAKDPALADAVAEAVAAVDPSLILVGLAG----------------SELIRAAEE 156 (246)
T ss_pred HHHHHHHHHcCCeeEEeCccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecCC----------------hHHHHHHHH
Confidence 456777777777777654322 113456668898999999999998643 333344444
Q ss_pred CCCceE--EEecCCCCCCcccccCCcceEEEEEccCCcchHHHHHHHHHHhhCCCe
Q 004461 556 APCSVG--ILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGI 609 (752)
Q Consensus 556 ApC~V~--Ilv~rg~~~~~~~~~~~~~~~I~v~~~gg~ddreAL~~a~~ma~~~~~ 609 (752)
.-.++. .|.||++......-+.....-++ .|..++.+.+.+|++.-.+
T Consensus 157 ~Gl~~~~E~FADR~Y~~dG~Lv~R~~~gAvi------~d~~~v~~~~~~~~~~g~v 206 (246)
T PRK05406 157 AGLRTASEVFADRAYTADGTLVPRSQPGAVI------HDEEEAAAQVLQMVQEGRV 206 (246)
T ss_pred cCCcEEEEEEecCCcCCCCCCcCCCCCCCcc------CCHHHHHHHHHHHHHcCCE
Confidence 444432 57899864211111111111111 4667899999999987543
No 192
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=33.25 E-value=2.2e+02 Score=27.02 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=25.0
Q ss_pred EEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEee
Q 004461 582 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLL 618 (752)
Q Consensus 582 ~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~ 618 (752)
++++.+.||.|+--++.++.+. +-++..+++..
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~----~~~v~~~~~~~ 33 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE----GYEVHALSFDY 33 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc----CCcEEEEEEEC
Confidence 5789999999999888877653 44566677653
No 193
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=32.86 E-value=2.8e+02 Score=32.44 Aligned_cols=73 Identities=18% Similarity=0.226 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q 004461 36 QICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLEL 112 (752)
Q Consensus 36 ~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~ 112 (752)
+..++++++.+.+.+.+.++...+++-+.+|+++|.+.-....+-.+ .......+.++.+.-.++....|+++
T Consensus 239 e~~l~l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~----~~~~~f~~~ls~l~e~~IFvlLGl~l 311 (559)
T TIGR00840 239 EPLFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQ----TTIKYFMKMLSSLSETLIFIFLGVSL 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666777788889999999999998654322211000 01124566777777777777888875
No 194
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=32.12 E-value=1.7e+02 Score=29.00 Aligned_cols=75 Identities=24% Similarity=0.386 Sum_probs=48.8
Q ss_pred hhHHHHHHHhhccccchhhchh--hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHH
Q 004461 273 IFLPLYFVSSGLKTNIATIQGL--QSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLN 348 (752)
Q Consensus 273 ~~~piFFv~~Gl~~d~~~l~~~--~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~l~~ 348 (752)
+..-+|++-+.+.-|-..+.+- ..+ ..+.+-+...++-++++++.+++.++|++|++.++..++=-..-...+..
T Consensus 30 L~lLLF~VGi~lG~~~~~l~~l~~~g~-~~Llipl~tIlGSllgg~l~~~ll~~~~~~~lav~sG~GwYSlsg~~i~~ 106 (191)
T PF03956_consen 30 LYLLLFLVGIDLGSNREILRQLRSLGK-RALLIPLATILGSLLGGLLASLLLGLSLKESLAVASGFGWYSLSGVLITQ 106 (191)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccCcHHHhHHHHHHh
Confidence 3344455555555553333211 122 34566777788999999999999999999999998877655544444443
No 195
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=32.06 E-value=1e+02 Score=29.32 Aligned_cols=51 Identities=20% Similarity=0.178 Sum_probs=33.5
Q ss_pred EEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhc
Q 004461 582 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKT 649 (752)
Q Consensus 582 ~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~ 649 (752)
|+++.|.||+|+.-.|.++.+..... .++.+.+..+.. .-.++++++..++
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~----~vv~~dtg~e~p-------------~t~~~~~~~~~~~ 51 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV----PVVFIDTGYEFP-------------ETYEFVDELAKRY 51 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC----EEEEEE-STB-H-------------HHHHHHHHHHHHT
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC----cEEEEecCccCH-------------HHHHHHHHHHhhh
Confidence 57899999999999999999888874 566665433322 2246666666654
No 196
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=31.65 E-value=3.7e+02 Score=28.20 Aligned_cols=37 Identities=22% Similarity=0.434 Sum_probs=31.4
Q ss_pred cceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeee
Q 004461 407 QFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLME 448 (752)
Q Consensus 407 e~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvve 448 (752)
..||+|++.|-..+..++.++..+. ++ ..+.++||-.
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~---~~--~~~~a~~Vd~ 57 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELG---RR--IEVEAVHVDH 57 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhc---cC--ceEEEEEecC
Confidence 6799999999999999999999988 33 7788888853
No 197
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.02 E-value=8.9e+02 Score=28.09 Aligned_cols=30 Identities=27% Similarity=0.541 Sum_probs=22.4
Q ss_pred chHHHHHHHHHHHHHHhhHHHHHHHhhcccc
Q 004461 257 PFANALVEKVEDLVSGIFLPLYFVSSGLKTN 287 (752)
Q Consensus 257 ~~~~~l~~kl~~~~~~~~~piFFv~~Gl~~d 287 (752)
|.-..+..-+-+++ .+|+=+||++..+=.+
T Consensus 485 ~~~~ili~GilPFg-~ifIELfFI~~SiW~~ 514 (628)
T KOG1278|consen 485 PIPSILIAGILPFG-AIFIELFFILSSIWLN 514 (628)
T ss_pred hhhHHHhhcccchH-HHHHHHHHHHHHHHhh
Confidence 45566777777774 7888899998877666
No 198
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=30.76 E-value=1e+02 Score=28.73 Aligned_cols=58 Identities=14% Similarity=0.165 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEecCCC
Q 004461 508 MHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGL 568 (752)
Q Consensus 508 ~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv~rg~ 568 (752)
..+.|.+++++++++.||+|.... .+|.........+..++++-++-++|| +++|--+
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~--~~G~~~~~~~~v~~f~~~L~~~~~~~v-~~~DEr~ 99 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLN--MDGTEGPRTERARKFANRLEGRFGLPV-VLVDERL 99 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCC--CCCCcCHHHHHHHHHHHHHHHHhCCCE-EEEcCCc
Confidence 468899999999999999997643 244432233347788888877778998 6777644
No 199
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=30.63 E-value=45 Score=29.28 Aligned_cols=22 Identities=9% Similarity=0.228 Sum_probs=19.7
Q ss_pred ChHHHHHHHHHhcCccEEEecC
Q 004461 507 DMHEDICTTAESKRAAIIILPF 528 (752)
Q Consensus 507 ~~~~~I~~~A~e~~adLIImg~ 528 (752)
+-+++|++.|+++++||+|+|-
T Consensus 49 ~d~~~l~~~a~~~~idlvvvGP 70 (100)
T PF02844_consen 49 TDPEELADFAKENKIDLVVVGP 70 (100)
T ss_dssp T-HHHHHHHHHHTTESEEEESS
T ss_pred CCHHHHHHHHHHcCCCEEEECC
Confidence 6679999999999999999996
No 200
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=30.60 E-value=94 Score=29.18 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=27.5
Q ss_pred EEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeec
Q 004461 582 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLA 619 (752)
Q Consensus 582 ~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~ 619 (752)
+|++.|.||+|+--.+.++.+...+. -+++++.+.+.
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~dtg 37 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLDTG 37 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeCCC
Confidence 57899999999988888887765542 45677776543
No 201
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=30.09 E-value=1.5e+02 Score=31.24 Aligned_cols=109 Identities=15% Similarity=0.124 Sum_probs=69.1
Q ss_pred ceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEecCCCCCCc
Q 004461 493 RVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTT 572 (752)
Q Consensus 493 ~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv~rg~~~~~ 572 (752)
+..|-.+-..+ -.+..+|++.|++.++.+|+.-+.+.-...+ -..+........+++..||.+=.|+|.+- .
T Consensus 17 ~yaV~AfN~~n--~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g-----~~~~~~~~~~~A~~~~vPV~lHLDH~~~~-e 88 (283)
T PRK07998 17 HVLAGAFNTTN--LETTISILNAIERSGLPNFIQIAPTNAQLSG-----YDYIYEIVKRHADKMDVPVSLHLDHGKTF-E 88 (283)
T ss_pred CCEEEEEeeCC--HHHHHHHHHHHHHhCCCEEEECcHhHHhhCC-----HHHHHHHHHHHHHHCCCCEEEECcCCCCH-H
Confidence 34444444443 4788999999999999999998776533222 12377788889999999999998987530 0
Q ss_pred cc--ccCCcceEEEEEccCCcchH-HHHHH---HHHHhhCCCeEE
Q 004461 573 QV--SASNVSYTITVLFFGGRDDR-EALAC---GARMAEHPGISF 611 (752)
Q Consensus 573 ~~--~~~~~~~~I~v~~~gg~ddr-eAL~~---a~~ma~~~~~~l 611 (752)
.. .-...+..| .+||+..+- |-++. +.++|...|+.+
T Consensus 89 ~i~~Ai~~GftSV--M~DgS~l~~eeNi~~T~~vve~Ah~~gv~V 131 (283)
T PRK07998 89 DVKQAVRAGFTSV--MIDGAALPFEENIAFTKEAVDFAKSYGVPV 131 (283)
T ss_pred HHHHHHHcCCCEE--EEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 00 000112333 458876553 44443 455666677665
No 202
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=29.74 E-value=5.4e+02 Score=25.45 Aligned_cols=75 Identities=12% Similarity=0.097 Sum_probs=42.4
Q ss_pred cchHHHHHHHhhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCC
Q 004461 478 PNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAP 557 (752)
Q Consensus 478 ~~~i~~~~~~~~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~Ap 557 (752)
.+.+.+.+++..++.++.+.....-.. .+-..+.++.+...++|.||....... . .. .-..++++.
T Consensus 14 ~~~~~~g~~~~~~~~g~~l~~~~~~~~-~~~~~~~~~~~~~~~~d~ii~~~~~~~-----~------~~--~~~~l~~~~ 79 (264)
T cd01537 14 FAQVLKGIEEAAKAAGYQVLLANSQND-AEKQLSALENLIARGVDGIIIAPSDLT-----A------PT--IVKLARKAG 79 (264)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEeCCCC-HHHHHHHHHHHHHcCCCEEEEecCCCc-----c------hh--HHHHhhhcC
Confidence 456777777777777776654433221 011344555556668998888642111 0 11 235667788
Q ss_pred CceEEEecCC
Q 004461 558 CSVGILIDRG 567 (752)
Q Consensus 558 C~V~Ilv~rg 567 (752)
.|+ |+.+..
T Consensus 80 ip~-v~~~~~ 88 (264)
T cd01537 80 IPV-VLVDRD 88 (264)
T ss_pred CCE-EEeccC
Confidence 887 556653
No 203
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=29.70 E-value=4.3e+02 Score=26.36 Aligned_cols=73 Identities=14% Similarity=0.008 Sum_probs=40.1
Q ss_pred cchHHHHHHHhhhccceEEEEeEEecCCCChH--HHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhc
Q 004461 478 PNHIVVAFEAFQQLSRVSVRPMTAISSMSDMH--EDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKH 555 (752)
Q Consensus 478 ~~~i~~~~~~~~~~~~v~v~~~~~v~~~~~~~--~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ 555 (752)
..++.+.+++..++.++.+.....-. +.. .+.++.....++|-||+...... . ..... +.++.
T Consensus 14 ~~~~~~~~~~~a~~~g~~~~~~~~~~---~~~~~~~~~~~l~~~~vdgvi~~~~~~~-----~------~~~~~-~~l~~ 78 (267)
T cd01536 14 WQAMNKGAEAAAKELGVELIVLDAQN---DVSKQIQQIEDLIAQGVDGIIISPVDSA-----A------LTPAL-KKANA 78 (267)
T ss_pred HHHHHHHHHHHHHhcCceEEEECCCC---CHHHHHHHHHHHHHcCCCEEEEeCCCch-----h------HHHHH-HHHHH
Confidence 45677777777776666655543322 332 34555555668998877532110 0 11122 34566
Q ss_pred CCCceEEEecC
Q 004461 556 APCSVGILIDR 566 (752)
Q Consensus 556 ApC~V~Ilv~r 566 (752)
..+|+ |+.++
T Consensus 79 ~~ip~-V~~~~ 88 (267)
T cd01536 79 AGIPV-VTVDS 88 (267)
T ss_pred CCCcE-EEecC
Confidence 78887 55666
No 204
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=29.53 E-value=7.1e+02 Score=28.68 Aligned_cols=24 Identities=21% Similarity=0.005 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Q 004461 125 LGIAIAGISLPFALGIGSSFLLRE 148 (752)
Q Consensus 125 ~~i~~~~~~~~~~~~~~~~~~l~~ 148 (752)
-.++....++.+++++++..+++.
T Consensus 358 glia~iaL~~~v~~~l~~~~l~g~ 381 (498)
T PRK05812 358 GLIANIALVANLVLILAVLSLLGA 381 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
Confidence 334555555556666655555554
No 205
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=29.04 E-value=1.7e+02 Score=32.64 Aligned_cols=72 Identities=14% Similarity=0.246 Sum_probs=52.3
Q ss_pred HHHHHhhHHHHHHHhhccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhH
Q 004461 268 DLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKG 340 (752)
Q Consensus 268 ~~~~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG 340 (752)
+++..+.+.+-..--|++++++.+.. ..|+.+.+-.+..++.-.+....+.+.++.+|.|++.+|.+.+.--
T Consensus 61 y~vg~lALaiILfdgG~~T~lss~r~-a~~palsLATlGVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTD 132 (574)
T COG3263 61 YMVGNLALAIILFDGGFGTQLSSFRV-AAGPALSLATLGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTD 132 (574)
T ss_pred HHHHHHHHHHHhhcCccCCcHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhhcccc
Confidence 34455566666677899999888765 3555555556666666667777788889999999999999876543
No 206
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=28.84 E-value=2e+02 Score=31.33 Aligned_cols=88 Identities=11% Similarity=0.088 Sum_probs=56.8
Q ss_pred chHHHHHHHhhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCccccc-CCc-ccc--------ccchhHHH
Q 004461 479 NHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRL-DGS-LET--------TRSDFRWV 548 (752)
Q Consensus 479 ~~i~~~~~~~~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~-~g~-~~~--------~~~~~gsv 548 (752)
++..+.++... +.+..|-.+-... -.+...|++.|++.+..+|+.-+.+.... .+. ++. +...+...
T Consensus 7 ~~~k~~L~~A~-~~~yAV~AfNv~n--~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (350)
T PRK09197 7 EDYQEMFDRAK-ENGFALPAVNVVG--TDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKH 83 (350)
T ss_pred HHHHHHHHHHH-HCCceEEEEEeCC--HHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHH
Confidence 34444444433 3344444555444 47899999999999999999988765432 210 100 00015567
Q ss_pred HHHHhhcCCCceEEEecCCCC
Q 004461 549 NQRVLKHAPCSVGILIDRGLG 569 (752)
Q Consensus 549 ~~~Vl~~ApC~V~Ilv~rg~~ 569 (752)
.....+++++||++=.|+|..
T Consensus 84 v~~~A~~~~VPValHLDHg~~ 104 (350)
T PRK09197 84 VHEVAEHYGVPVILHTDHCAK 104 (350)
T ss_pred HHHHHHHCCCCEEEECCCCCC
Confidence 778889999999998899754
No 207
>PRK01821 hypothetical protein; Provisional
Probab=28.61 E-value=4.1e+02 Score=24.67 Aligned_cols=97 Identities=13% Similarity=-0.003 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCh---hHHHHHH--HHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHH
Q 004461 32 LAILQICLVILLTRGLAFILRPLRQPR---VIAEITG--GILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMF 106 (752)
Q Consensus 32 ~~l~~i~lil~~~~~~~~ll~rl~~P~---iv~~Ila--GiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF 106 (752)
.++.|+.+++.+..+...+.+-+++|- ++|.++- ....|..-..+++ ...--.++++++.|+=-
T Consensus 10 ~~l~~l~ill~~~~~Ge~i~~~l~lpiPGsViGmlLLf~~L~~~~vk~~~v~-----------~~a~~LL~~m~LfFVPa 78 (133)
T PRK01821 10 QYLRAFVLIYACLYAGIFIASLLPITIPGSIIGMLILFVLLALQILPAKWVK-----------PGCSLLIRYMALLFVPI 78 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhCCcCHHHHH-----------HHHHHHHHHHHHHHhhh
Confidence 467788887777777677777677643 3343332 2222211111111 01112335555555555
Q ss_pred HHhhccChhhHHhcCchhhHHHHHHHHHHHHHH
Q 004461 107 LVGLELDPKSLRQTGKKALGIAIAGISLPFALG 139 (752)
Q Consensus 107 ~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~ 139 (752)
.+|+=...+.+++++.+....-+.+.++.++.+
T Consensus 79 ~VGim~~~~ll~~~~~~il~~ivvST~lvl~vt 111 (133)
T PRK01821 79 GVGVMQYYDLLRAQFGPIVVSCIVSTLVVLLVV 111 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666655555555555444433
No 208
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=28.48 E-value=2.4e+02 Score=30.10 Aligned_cols=74 Identities=16% Similarity=0.239 Sum_probs=47.7
Q ss_pred HHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccChhhHHhcCchhhHHHHHHHHHHHHHH
Q 004461 60 IAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALG 139 (752)
Q Consensus 60 v~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~ 139 (752)
+--++.|+++|.. .+.+.+.+-|. ..+-+-|+-|..|-.+|+..+.+.+-.-+.+++..++++....
T Consensus 175 llP~iiG~iLGNL----D~~~r~fl~~~---------~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~ 241 (314)
T PF03812_consen 175 LLPIIIGMILGNL----DPDFRKFLAPG---------VPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPL 241 (314)
T ss_pred HHHHHHHHHHhcC----CHHHHHHHhcC---------CCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHH
Confidence 4456688998852 22222222221 2233456889999999999999999888888887777665555
Q ss_pred HHHHHHh
Q 004461 140 IGSSFLL 146 (752)
Q Consensus 140 ~~~~~~l 146 (752)
+.+..++
T Consensus 242 ~~~dr~i 248 (314)
T PF03812_consen 242 YLADRLI 248 (314)
T ss_pred HHHHHHH
Confidence 5444443
No 209
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=28.33 E-value=7e+02 Score=26.37 Aligned_cols=90 Identities=16% Similarity=0.332 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhh-hHHHHHHHHHhhhccCCCCHHHHHH---HHHHHHHHH
Q 004461 297 WGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNT-KGLVELIVLNIGKDRKVLNDQVFAI---MILMAVVTT 372 (752)
Q Consensus 297 ~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~-rG~v~l~l~~~~~~~~~i~~~~~~~---lv~~~lv~t 372 (752)
..+..++++.++++=+.+++....+++.++.-++.+|+.++. ..-++-.+.+.-...+....+.... +++++++.-
T Consensus 16 ~~~G~~vl~ta~la~~s~~~a~~~~~~~~~~~ai~~glvwgl~I~~lDR~ivss~~~~~~~~~~~~~~~~R~~lAvliai 95 (301)
T PF14362_consen 16 AGIGAAVLFTALLAGLSGGYALYTVFGGPVWAAIPFGLVWGLVIFNLDRFIVSSIRKSDGSRKRLLQALPRLLLAVLIAI 95 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777888888888888887666666654322 1112222222222222211122111 335555555
Q ss_pred HHHHHHHHHHhchh
Q 004461 373 FMTTPLVMAVYKPA 386 (752)
Q Consensus 373 ~i~~pl~~~l~~~~ 386 (752)
.++.|+.-.++++.
T Consensus 96 vIs~pl~l~iF~~e 109 (301)
T PF14362_consen 96 VISEPLELKIFEKE 109 (301)
T ss_pred HHHHHHHHHHHHHH
Confidence 66778888888763
No 210
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=28.28 E-value=2.6e+02 Score=26.61 Aligned_cols=63 Identities=10% Similarity=0.069 Sum_probs=39.1
Q ss_pred HHHHHHHhhHHHHHHHhhccccchhhchh--hh-HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 004461 266 VEDLVSGIFLPLYFVSSGLKTNIATIQGL--QS-WGLLALVILTACLGKIVGTFVVSLSFKVPLRE 328 (752)
Q Consensus 266 l~~~~~~~~~piFFv~~Gl~~d~~~l~~~--~~-~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~ 328 (752)
...+..++-+-+|...+|++.=...+... .. +.......++.++.-.+..++..+++|+++..
T Consensus 51 ~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~ 116 (154)
T TIGR01625 51 ANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVAVALIKLLRINYAL 116 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 44445677888999999999886544322 12 22233334444444566677777889998753
No 211
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=27.93 E-value=7.6e+02 Score=26.28 Aligned_cols=115 Identities=16% Similarity=0.157 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHH--HHHHHHhh
Q 004461 260 NALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREA--LALGILMN 337 (752)
Q Consensus 260 ~~l~~kl~~~~~~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~--~~lgl~l~ 337 (752)
+.+.+-++.+ .+...|+-...+|+.++...+.. .+.......+..++.-++.++.....++.+.... ..+-. ..
T Consensus 203 ~~l~~~l~~l-g~~~~plaLl~lG~~l~~~~~~~--~~~~~~~~~~~klil~P~i~~~~~~~~~l~~~~~~~~vl~a-a~ 278 (321)
T TIGR00946 203 GLILKSISIL-SGATTPMALFSLGLALSPRKIKL--GVRDAILALIVRFLVQPAVMAGISKLIGLRGLELSVAILQA-AL 278 (321)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhhChhhhcc--ChHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH-cC
Confidence 3445556655 57788999999999998776643 3334445556666666666777777777754332 22222 24
Q ss_pred hhHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004461 338 TKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAV 382 (752)
Q Consensus 338 ~rG~v~l~l~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~pl~~~l 382 (752)
|-+....+++.. .| .+++..+..+..+.+.+.++-|+.-++
T Consensus 279 P~a~~~~i~A~~---y~-~~~~~aa~~v~~sT~ls~~tlp~~~~l 319 (321)
T TIGR00946 279 PGGAVAAVLATE---YE-VDVELASTAVTLSTVLSLISLPLFIIL 319 (321)
T ss_pred ChhhHHHHHHHH---hC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445544444433 33 245555555555556677777766554
No 212
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=27.70 E-value=7.5e+02 Score=26.72 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=33.0
Q ss_pred HHHHHHhhccChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHh
Q 004461 103 FFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLL 146 (752)
Q Consensus 103 ~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l 146 (752)
+..|..|..++...+.+.+-....+++...+++..+++.+..++
T Consensus 207 ~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~~Rl~ 250 (326)
T PRK05274 207 FFAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLADRLI 250 (326)
T ss_pred HHHHHHhcceeHhHHHhcCCcchhhhhhHhhccchhhHhHhhee
Confidence 35666899999999988888888888877777766655555444
No 213
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=27.59 E-value=1.6e+02 Score=31.75 Aligned_cols=75 Identities=12% Similarity=0.135 Sum_probs=51.9
Q ss_pred cceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCC-cccccCC-cccc---------ccchhHHHHHHHhhcCCCce
Q 004461 492 SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFH-KHQRLDG-SLET---------TRSDFRWVNQRVLKHAPCSV 560 (752)
Q Consensus 492 ~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~h-g~~~~~g-~~~~---------~~~~~gsv~~~Vl~~ApC~V 560 (752)
++..|-.+-..+ ..+...+++.|++.++..|+.-+. +.....+ ...+ +-..+........+++.+||
T Consensus 11 ~~yAV~AfN~~n--~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~VPV 88 (340)
T cd00453 11 NNFALPAVNCVG--TDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPV 88 (340)
T ss_pred CCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHHHCCCCE
Confidence 334444444444 478899999999999999999887 3322222 0000 02236777888899999999
Q ss_pred EEEecCCC
Q 004461 561 GILIDRGL 568 (752)
Q Consensus 561 ~Ilv~rg~ 568 (752)
.+=.|+|.
T Consensus 89 ~lHLDH~~ 96 (340)
T cd00453 89 ILHTDHCA 96 (340)
T ss_pred EEEcCCCC
Confidence 99999986
No 214
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=27.56 E-value=5.1e+02 Score=26.26 Aligned_cols=76 Identities=14% Similarity=0.009 Sum_probs=40.9
Q ss_pred cchHHHHHHHhhhccceEEEEeEEecCCCCh--HHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhc
Q 004461 478 PNHIVVAFEAFQQLSRVSVRPMTAISSMSDM--HEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKH 555 (752)
Q Consensus 478 ~~~i~~~~~~~~~~~~v~v~~~~~v~~~~~~--~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ 555 (752)
..++.+.+++..++.+..+.....-+ ..+. ..+..+...++++|-||+....... ..... +.+++
T Consensus 14 ~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~-----------~~~~~-~~~~~ 80 (275)
T cd06320 14 WRSLKEGYENEAKKLGVSVDIQAAPS-EGDQQGQLSIAENMINKGYKGLLFSPISDVN-----------LVPAV-ERAKK 80 (275)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEccCC-CCCHHHHHHHHHHHHHhCCCEEEECCCChHH-----------hHHHH-HHHHH
Confidence 45666777777776666554332111 1233 2345666777889976664321100 12222 34567
Q ss_pred CCCceEEEecCC
Q 004461 556 APCSVGILIDRG 567 (752)
Q Consensus 556 ApC~V~Ilv~rg 567 (752)
+.+|| |++++.
T Consensus 81 ~~iPv-V~~~~~ 91 (275)
T cd06320 81 KGIPV-VNVNDK 91 (275)
T ss_pred CCCeE-EEECCC
Confidence 78898 567773
No 215
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=27.22 E-value=4.3e+02 Score=26.64 Aligned_cols=109 Identities=12% Similarity=0.075 Sum_probs=56.2
Q ss_pred cchHHHHHHHhhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCC
Q 004461 478 PNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAP 557 (752)
Q Consensus 478 ~~~i~~~~~~~~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~Ap 557 (752)
..++.+.+++..++.+..+.....-. ..+-.+++++...++++|-||+-.... +. .. -+-++++.
T Consensus 14 ~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~i~~l~~~~vdgiii~~~~~---~~-------~~----~~~~~~~~ 78 (264)
T cd06274 14 FARIAKRLEALARERGYQLLIACSDD-DPETERETVETLIARQVDALIVAGSLP---PD-------DP----YYLCQKAG 78 (264)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEcCCCC---ch-------HH----HHHHHhcC
Confidence 45666667766666565554433211 112234677778889999666643210 00 01 12345677
Q ss_pred CceEEEecCCCCCCcccccCCcceEEEEEccCCcchHHH-HHHHHHHhhCCCeEEEEEE
Q 004461 558 CSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREA-LACGARMAEHPGISFIVIR 615 (752)
Q Consensus 558 C~V~Ilv~rg~~~~~~~~~~~~~~~I~v~~~gg~ddreA-L~~a~~ma~~~~~~ltvl~ 615 (752)
.|| |+++|.... .. +++.+. |+.++ -..+..+.++..-++.++.
T Consensus 79 ipv-V~~~~~~~~-------~~-----~~~V~~-d~~~~g~~~~~~l~~~g~~~i~~i~ 123 (264)
T cd06274 79 LPV-VALDRPGDP-------SR-----FPSVVS-DNRDGAAELTRELLAAPPEEVLFLG 123 (264)
T ss_pred CCE-EEecCccCC-------CC-----CCEEEE-ccHHHHHHHHHHHHHCCCCcEEEEe
Confidence 887 678884320 01 122333 44443 4556667765545555443
No 216
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=26.86 E-value=7.9e+02 Score=28.97 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh-hhhhccCCchhHHHHHHHHHHhhccHHHHHH-HHHHcc
Q 004461 125 LGIAIAGISLPFALGIGSSFLL-RETISKGVDSTSFLVFMGVALSITAFPVLAR-ILAELK 183 (752)
Q Consensus 125 ~~i~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~-iL~el~ 183 (752)
-.++..+..+.+++.+++..++ +..+. . ....++.+++-+++=+..++.. +-+|++
T Consensus 465 glva~iAL~~~l~l~l~vmsll~G~tLt--L-pgIAGiILtIGmaVDanIVI~ERIrEel~ 522 (604)
T PRK12933 465 GWVANVALIANMVCLFGLLALIPGAVLT--L-PGIAGLVLTVGMAVDTNVLIFERIKDKLK 522 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccc--H-HHHHHHHHHHHhhccCcEEEehHHHHHHH
Confidence 3344555555555555555444 33221 1 1134445555555544444443 434444
No 217
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=26.44 E-value=8.2e+02 Score=26.17 Aligned_cols=59 Identities=22% Similarity=0.321 Sum_probs=33.0
Q ss_pred cccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccChhhHHhcC
Q 004461 52 RPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTG 121 (752)
Q Consensus 52 ~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~ 121 (752)
+-+|...-.|-.++|+++.-+=+. +...+..+ .+.+.-.+++.-.+|+-.|+..+-+..
T Consensus 244 ~LfgvsfaLGAffaGMvL~esels--hraa~~sl---------pLrdaFaVlFFvsVGmlf~P~~l~~~p 302 (408)
T COG4651 244 ELFGVSFALGAFFAGMVLAESELS--HRAAEDSL---------PLRDAFAVLFFVSVGMLFDPMILIQQP 302 (408)
T ss_pred eeeccchhHHHHHHHHHhcchhhh--HHHHHhcc---------CHHHHHHHHHHHHhhhhcCcHHhhcch
Confidence 334566666666666666643221 11112222 244444555666789999998876654
No 218
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=26.41 E-value=4.2e+02 Score=24.40 Aligned_cols=102 Identities=20% Similarity=0.116 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCh---hHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHH
Q 004461 30 LPLAILQICLVILLTRGLAFILRPLRQPR---VIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMF 106 (752)
Q Consensus 30 ~~~~l~~i~lil~~~~~~~~ll~rl~~P~---iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF 106 (752)
...++.|+.++..+..+..++.+-+++|- ++|.++-=..+. ++.++. +++ ....-..++++++.|.==
T Consensus 4 ~~~~~~q~~ii~~~~~~G~~i~~~l~lplPGsIiGmvLLfllL~---~~iv~l--~wv----~~~a~~Ll~~m~llFVPa 74 (128)
T COG1380 4 VMQILRQLAIILGFLFLGEWIASLLHLPLPGSIIGMVLLFLLLA---LKIVKL--EWV----ERGATFLLRNMALLFVPA 74 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHH---hCCccH--HHH----HHHHHHHHHHHHHHHhcc
Confidence 34678899999988888888888777763 344433222221 222220 000 011223345555555444
Q ss_pred HHhhccChhhHHhcCchhhHHHHHHHHHHHHHHH
Q 004461 107 LVGLELDPKSLRQTGKKALGIAIAGISLPFALGI 140 (752)
Q Consensus 107 ~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~ 140 (752)
.+|+=-..+.+...+.+.+...+.+.++.+....
T Consensus 75 ~VgVm~y~~~l~~~~~~Il~~~iiST~lv~~vtg 108 (128)
T COG1380 75 GVGVMNYFDLLAADGLPILVVIIISTLLVLLVTG 108 (128)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5565556666777777666666565555544433
No 219
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=26.35 E-value=5.4e+02 Score=27.66 Aligned_cols=105 Identities=16% Similarity=0.211 Sum_probs=63.5
Q ss_pred HhhHHHHHHHhhccccchhhchh-hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh---hhhHHHHHHHH
Q 004461 272 GIFLPLYFVSSGLKTNIATIQGL-QSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILM---NTKGLVELIVL 347 (752)
Q Consensus 272 ~~~~piFFv~~Gl~~d~~~l~~~-~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l---~~rG~v~l~l~ 347 (752)
..++.+.|...|+++...++... ..|...++.++.-++.=.+.++..++.+++| ..++.|+.+ +|-|..+.++.
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~--~~l~~Gl~ll~~~Pggv~S~~~t 118 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLP--PELAVGLLLLGCCPGGVASNAMT 118 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHhHHheeeCCCchhHHHHH
Confidence 44566778889999998877542 3566666667777777788888888888754 456666654 66777775555
Q ss_pred HhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004461 348 NIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAV 382 (752)
Q Consensus 348 ~~~~~~~~i~~~~~~~lv~~~lv~t~i~~pl~~~l 382 (752)
..+ .|-..-..-... ++. +.+.+.+|++.++
T Consensus 119 ~lA--kGnValsV~~ts-vSt-ll~~f~tPllv~l 149 (319)
T COG0385 119 YLA--KGNVALSVCSTS-VST-LLGPFLTPLLVGL 149 (319)
T ss_pred HHh--cCcHHHHHHHHH-HHH-HHHHHHHHHHHHH
Confidence 544 333322222211 222 2244556666555
No 220
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=26.20 E-value=2e+02 Score=30.58 Aligned_cols=110 Identities=18% Similarity=0.215 Sum_probs=66.8
Q ss_pred cceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcC--CCceEEEecCCCC
Q 004461 492 SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHA--PCSVGILIDRGLG 569 (752)
Q Consensus 492 ~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~A--pC~V~Ilv~rg~~ 569 (752)
++..|-.+-... ..+...+++.|++.+...|+.-+.+.-...+.. ..+........+++ ..||.+=.|+| +
T Consensus 16 ~~yav~AfN~~n--~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~----~~~~~~~~~~a~~~~~~vPV~lHLDH~-~ 88 (293)
T PRK07315 16 NGYAVGGFNTNN--LEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGY----KVCKNLIENLVESMGITVPVAIHLDHG-H 88 (293)
T ss_pred CCceEEEEEECC--HHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcH----HHHHHHHHHHHHHcCCCCcEEEECCCC-C
Confidence 333444555444 488999999999999999999887654332211 12667777888888 66998888987 3
Q ss_pred CCcccc--cCCcceEEEEEccCCc-chHHHHHHH---HHHhhCCCeEE
Q 004461 570 GTTQVS--ASNVSYTITVLFFGGR-DDREALACG---ARMAEHPGISF 611 (752)
Q Consensus 570 ~~~~~~--~~~~~~~I~v~~~gg~-ddreAL~~a---~~ma~~~~~~l 611 (752)
..... -...+.. +-++++. +.+|-++.+ .++|...++.+
T Consensus 89 -~~~i~~ai~~GftS--Vm~d~S~l~~eEni~~t~~v~~~a~~~gv~v 133 (293)
T PRK07315 89 -YEDALECIEVGYTS--IMFDGSHLPVEENLKLAKEVVEKAHAKGISV 133 (293)
T ss_pred -HHHHHHHHHcCCCE--EEEcCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 10000 0001111 3455554 335555554 45566777776
No 221
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=26.14 E-value=7.8e+02 Score=26.29 Aligned_cols=75 Identities=21% Similarity=0.231 Sum_probs=48.2
Q ss_pred hHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccChhhHHhcCchhhHHHHHHHHHHHHH
Q 004461 59 VIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFAL 138 (752)
Q Consensus 59 iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~ 138 (752)
.+--++.|+++|.. .+-++.++.+. ...-.-|+-|..|-.+|++.+.+.+-.-+.+|+...+++...
T Consensus 174 ~ilPlliG~ilGNL-----D~~~r~fl~~~--------~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~ 240 (314)
T TIGR00793 174 AVLPFLVGFALGNL-----DPELRDFFSKA--------VQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIP 240 (314)
T ss_pred HHHHHHHHHHHhcC-----CHHHHHHhccC--------CCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 34456688998852 22222222211 122345688999999999999998888888888777766666
Q ss_pred HHHHHHHh
Q 004461 139 GIGSSFLL 146 (752)
Q Consensus 139 ~~~~~~~l 146 (752)
.+....++
T Consensus 241 ~~~~dr~~ 248 (314)
T TIGR00793 241 LILADKFI 248 (314)
T ss_pred HHHHHHHh
Confidence 55555544
No 222
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=26.10 E-value=2.5e+02 Score=24.27 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=24.8
Q ss_pred EEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEee
Q 004461 583 ITVLFFGGRDDREALACGARMAEHPGISFIVIRFLL 618 (752)
Q Consensus 583 I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~ 618 (752)
+++.+.||.|+--.+.++.+... ++..+++..
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~~----~~~~~~~~~ 32 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLGY----QVIAVTVDH 32 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhCC----CEEEEEEcC
Confidence 57899999999888888877632 677777764
No 223
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=25.88 E-value=2.3e+02 Score=29.99 Aligned_cols=111 Identities=14% Similarity=0.109 Sum_probs=67.1
Q ss_pred ceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCC--CceEEEecCCCCC
Q 004461 493 RVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAP--CSVGILIDRGLGG 570 (752)
Q Consensus 493 ~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~Ap--C~V~Ilv~rg~~~ 570 (752)
+..|-.+-... ..+...+++.|++.++.+|+.-+.+.-...+. -..+....+...++++ .||.+=.|+|.+-
T Consensus 17 ~yAV~AfN~~n--~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~----~~~~~~~~~~~A~~~~~~vPV~lHLDHg~~~ 90 (286)
T PRK08610 17 GYAVGQYNLNN--LEFTQAILEASQEENAPVILGVSEGAARYMSG----FYTVVKMVEGLMHDLNITIPVAIHLDHGSSF 90 (286)
T ss_pred CceEEEEEECC--HHHHHHHHHHHHHHCCCEEEEcCccHHhhcCc----HHHHHHHHHHHHHHcCCCCCEEEECCCCCCH
Confidence 33443444443 47889999999999999999998766443221 1126777788888887 6998888987530
Q ss_pred Cccc--ccCCcceEEEEEccCCcch-HHHHHH---HHHHhhCCCeEEE
Q 004461 571 TTQV--SASNVSYTITVLFFGGRDD-REALAC---GARMAEHPGISFI 612 (752)
Q Consensus 571 ~~~~--~~~~~~~~I~v~~~gg~dd-reAL~~---a~~ma~~~~~~lt 612 (752)
... .-...+.. |.+||+..+ +|=++. +.++|...|+.+-
T Consensus 91 -e~i~~ai~~GftS--VM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VE 135 (286)
T PRK08610 91 -EKCKEAIDAGFTS--VMIDASHSPFEENVATTKKVVEYAHEKGVSVE 135 (286)
T ss_pred -HHHHHHHHcCCCE--EEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 000 00001223 467777544 344444 3445555666543
No 224
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=25.78 E-value=1.2e+02 Score=32.44 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEEEe---cChHHHHHHHHhcc------CCCEEEEccCC
Q 004461 638 DEEVLSEFKLKTSRNGSVRYEERLV---RNTAETIAVIREVS------RCNLLLVGRMP 687 (752)
Q Consensus 638 d~~~l~e~~~~~~~~~~v~~~e~~v---~~g~~~~~~i~~~~------~~DLiivG~~~ 687 (752)
-.+++..++.+.... .+.+-...| +...+++.+++..+ +||+||++|+|
T Consensus 28 ~~D~~~~~~~r~~~~-~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGG 85 (319)
T PF02601_consen 28 IQDFLRTLKRRNPIV-EIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGG 85 (319)
T ss_pred HHHHHHHHHHhCCCc-EEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCC
Confidence 356777777664332 333334444 55667777777765 28999999999
No 225
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=25.67 E-value=1.9e+02 Score=31.84 Aligned_cols=40 Identities=18% Similarity=0.237 Sum_probs=31.9
Q ss_pred cCCcceEEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeec
Q 004461 576 ASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLA 619 (752)
Q Consensus 576 ~~~~~~~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~ 619 (752)
|..+..++++.+.||.|+--|+.++.+ .|.+++.++|..+
T Consensus 168 P~g~~~kvlvllSGGiDS~vaa~ll~k----rG~~V~av~~~~~ 207 (371)
T TIGR00342 168 PVGTQGKVLALLSGGIDSPVAAFMMMK----RGCRVVAVHFFNE 207 (371)
T ss_pred CcCcCCeEEEEecCCchHHHHHHHHHH----cCCeEEEEEEeCC
Confidence 445567999999999999988877754 2788999999743
No 226
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=25.47 E-value=8e+02 Score=25.73 Aligned_cols=68 Identities=9% Similarity=0.033 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEEEecChHHHHHHHHhccCCCEEEEccCC------CccccccccCCCCCCccccchhh
Q 004461 638 DEEVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMP------DGELALALSTRSDCLELGPVGSL 710 (752)
Q Consensus 638 d~~~l~e~~~~~~~~~~v~~~e~~v~~g~~~~~~i~~~~~~DLiivG~~~------~~~~~~gl~~w~e~peLG~igd~ 710 (752)
.-+++.+++... +-.+.. .=-+.++++..+.++ .+ +|++.+||.- -..+.+|+.+|.+..-...+.|+
T Consensus 219 ~~~~i~~i~~~~--~ipii~-~GGI~~~~da~~~l~-~G-Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g~~~~~~~ 292 (296)
T cd04740 219 ALRMVYQVYKAV--EIPIIG-VGGIASGEDALEFLM-AG-ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGIKSIEEL 292 (296)
T ss_pred HHHHHHHHHHhc--CCCEEE-ECCCCCHHHHHHHHH-cC-CCEEEEchhhhcChHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 346777777653 222322 223567777777775 33 9999999996 24557888888766555566554
No 227
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=24.84 E-value=1.7e+02 Score=27.46 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=42.0
Q ss_pred hHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEecC
Q 004461 508 MHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDR 566 (752)
Q Consensus 508 ~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv~r 566 (752)
-.+.|.++.++++++.||+|...+ .+|.-+..........+++-++-++|| ++.|.
T Consensus 41 ~~~~l~~li~~~~~~~vVVGlP~~--m~g~~~~~~~~~~~f~~~L~~r~~lpv-~l~DE 96 (141)
T COG0816 41 DFNALLKLVKEYQVDTVVVGLPLN--MDGTEGPRAELARKFAERLKKRFNLPV-VLWDE 96 (141)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcC--CCCCcchhHHHHHHHHHHHHHhcCCCE-EEEcC
Confidence 568899999999999999998643 233333333347788889999999998 67776
No 228
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.58 E-value=7.4e+02 Score=25.01 Aligned_cols=74 Identities=14% Similarity=0.036 Sum_probs=40.3
Q ss_pred cchHHHHHHHhhhccceEEEEeEEecCCCChH--HHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhc
Q 004461 478 PNHIVVAFEAFQQLSRVSVRPMTAISSMSDMH--EDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKH 555 (752)
Q Consensus 478 ~~~i~~~~~~~~~~~~v~v~~~~~v~~~~~~~--~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ 555 (752)
...+.+.+++..++.+..+...... .+.. .+..+.+...++|-||+....... .-... +.+++
T Consensus 14 ~~~~~~~i~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~~~~~~~dgiii~~~~~~~-----------~~~~l-~~~~~ 78 (277)
T cd06319 14 WQIMGRGVKSKAKALGYDAVELSAE---NSAKKELENLRTAIDKGVSGIIISPTNSSA-----------AVTLL-KLAAQ 78 (277)
T ss_pred HHHHHHHHHHHHHhcCCeEEEecCC---CCHHHHHHHHHHHHhcCCCEEEEcCCchhh-----------hHHHH-HHHHH
Confidence 4566677777777666665443221 2332 234455567889988765321100 01111 34667
Q ss_pred CCCceEEEecCC
Q 004461 556 APCSVGILIDRG 567 (752)
Q Consensus 556 ApC~V~Ilv~rg 567 (752)
+.+|| |++++.
T Consensus 79 ~~ipv-V~~~~~ 89 (277)
T cd06319 79 AKIPV-VIADIG 89 (277)
T ss_pred CCCCE-EEEecC
Confidence 78998 667773
No 229
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=24.32 E-value=1.7e+02 Score=25.76 Aligned_cols=39 Identities=18% Similarity=0.364 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHhh
Q 004461 131 GISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSI 169 (752)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~ 169 (752)
++++|.++|..++.++...++.+..+....+++|++.+.
T Consensus 51 ~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~ 89 (100)
T TIGR02230 51 SVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGC 89 (100)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH
Confidence 455677777777777766664333333445556665543
No 230
>COG3371 Predicted membrane protein [Function unknown]
Probab=24.16 E-value=4.6e+02 Score=25.64 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=42.3
Q ss_pred ccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccChhhHHhcCchhhH
Q 004461 53 PLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALG 126 (752)
Q Consensus 53 rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ 126 (752)
|.+-+.-.-++++|+.+. ..| +||++. .-+.+....+.+++|.+.+-+.....+++.+....
T Consensus 73 k~~~~g~~ll~is~lfLa--LVG--------VFpEgt--~pH~~vs~~ffll~fi~~~i~si~~~~~~~~~~~~ 134 (181)
T COG3371 73 KIENYGGALLIISGLFLA--LVG--------VFPEGT--PPHVFVSILFFLLSFIAMLIYSIGRLLRNRSGFGL 134 (181)
T ss_pred HhhhcchHHHHHHHHHHH--hee--------eCCCCC--CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 566666667778887776 223 245433 45677788888899999999999888775554433
No 231
>PRK10711 hypothetical protein; Provisional
Probab=24.08 E-value=7.9e+02 Score=25.15 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=22.6
Q ss_pred hhccChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHhh
Q 004461 109 GLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLR 147 (752)
Q Consensus 109 Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 147 (752)
-+==+.+.+||+++....--+.+.++.++.+..++..++
T Consensus 76 PLY~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg 114 (231)
T PRK10711 76 PLYEQLHQIRARWKSIISICFIGSVVAMVTGTAVALWMG 114 (231)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 333466677777776665555555555555555555554
No 232
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=24.06 E-value=2.6e+02 Score=29.65 Aligned_cols=112 Identities=13% Similarity=0.139 Sum_probs=67.2
Q ss_pred cceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCccccc-CCccccccchhHHHHHHHhhcCC--CceEEEecCCC
Q 004461 492 SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRL-DGSLETTRSDFRWVNQRVLKHAP--CSVGILIDRGL 568 (752)
Q Consensus 492 ~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~-~g~~~~~~~~~gsv~~~Vl~~Ap--C~V~Ilv~rg~ 568 (752)
++..|-.+-... ..+...+++.|++.++.+||.-+.+.-.. .+. ..+....+...+++. .||.+=.|+|.
T Consensus 16 ~~yAV~AfN~~n--~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~-----~~~~~~~~~~a~~~~~~VPV~lHLDHg~ 88 (285)
T PRK07709 16 GKYAVGQFNMNN--LEWTQAILAAAEEEKSPVILGVSEGAARHMTGF-----KTVVAMVKALIEEMNITVPVAIHLDHGS 88 (285)
T ss_pred CCceEEEEEECC--HHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCH-----HHHHHHHHHHHHHcCCCCcEEEECCCCC
Confidence 334444554444 47889999999999999999998765433 221 126777888888876 69988888875
Q ss_pred CCCc-ccccCCcceEEEEEccCCcch-HHHHHHH---HHHhhCCCeEEE
Q 004461 569 GGTT-QVSASNVSYTITVLFFGGRDD-REALACG---ARMAEHPGISFI 612 (752)
Q Consensus 569 ~~~~-~~~~~~~~~~I~v~~~gg~dd-reAL~~a---~~ma~~~~~~lt 612 (752)
+-.. ...-...+.. |.+||+..+ +|-++.. .++|...|+.+-
T Consensus 89 ~~e~i~~ai~~GftS--VM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VE 135 (285)
T PRK07709 89 SFEKCKEAIDAGFTS--VMIDASHHPFEENVETTKKVVEYAHARNVSVE 135 (285)
T ss_pred CHHHHHHHHHcCCCE--EEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 3000 0000001222 467787544 3444443 444555566543
No 233
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=23.95 E-value=1.7e+02 Score=30.13 Aligned_cols=104 Identities=12% Similarity=0.096 Sum_probs=53.1
Q ss_pred HHHHHhhhccceEEEEeEEec-------CCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhc
Q 004461 483 VAFEAFQQLSRVSVRPMTAIS-------SMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKH 555 (752)
Q Consensus 483 ~~~~~~~~~~~v~v~~~~~v~-------~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ 555 (752)
.+++.+.+..+.+++....=+ .....++.|++..++.+.+|++++-.+ |.-.+.-++
T Consensus 91 gaL~~~a~~~g~~l~hVKPHGALYn~~~~d~~lA~~i~~ai~~~~~~l~l~~~ag----------------s~~~~~A~~ 154 (242)
T PF03746_consen 91 GALQAIAAAEGVPLHHVKPHGALYNMAAKDEELARAIAEAIKAFDPDLPLYGLAG----------------SELEKAAKE 154 (242)
T ss_dssp HHHHHHHHHTT--EEEE---HHHHHHHHH-HHHHHHHHHHHHHH-TT-EEEEETT----------------SHHHHHHHH
T ss_pred HHHHHHHHHcCCeeEEecccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEEcCC----------------cHHHHHHHH
Confidence 456667777777777655332 112345569999999999999998642 223333343
Q ss_pred CCCceE--EEecCCCCCCcccccCCcceEEEEEccCCcchHHHHHHHHHHhhCCC
Q 004461 556 APCSVG--ILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPG 608 (752)
Q Consensus 556 ApC~V~--Ilv~rg~~~~~~~~~~~~~~~I~v~~~gg~ddreAL~~a~~ma~~~~ 608 (752)
.-.++. .|.||++.......+.....-++ .|-+++++.+.+|++.-.
T Consensus 155 ~Gl~~~~E~FADR~Y~~dG~Lv~R~~~gAvi------~d~~~~~~q~~~~~~~g~ 203 (242)
T PF03746_consen 155 LGLPVVFEAFADRAYDDDGSLVPRSQPGAVI------HDPEEAAEQVLQMVKEGS 203 (242)
T ss_dssp CT--EEEEEETTBEB-TTSSBEETTSTTCB---------HHHHHHHHHHHHHCSE
T ss_pred CCCcEEEEEEEcccCcCCCCEeecCCCCCcc------CCHHHHHHHHHHHHhCCc
Confidence 333332 57788764211111111111111 366889999999998743
No 234
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=23.77 E-value=3.7e+02 Score=27.29 Aligned_cols=112 Identities=10% Similarity=0.051 Sum_probs=56.7
Q ss_pred cchHHHHHHHhhhc-cceEEEEeEEecCCCChH--HHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhh
Q 004461 478 PNHIVVAFEAFQQL-SRVSVRPMTAISSMSDMH--EDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLK 554 (752)
Q Consensus 478 ~~~i~~~~~~~~~~-~~v~v~~~~~v~~~~~~~--~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~ 554 (752)
..++.+.+++..++ .++.+..... ..+.. ....+...++++|-||+..+... . ..... +-++
T Consensus 14 ~~~~~~gi~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiii~~~~~~-----~------~~~~~-~~l~ 78 (272)
T cd06301 14 LTLLRNAMKEHAKVLGGVELQFEDA---KNDVATQLSQVENFIAQGVDAIIVVPVDTA-----A------TAPIV-KAAN 78 (272)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEecCchh-----h------hHHHH-HHHH
Confidence 45666677777666 6666554332 12332 23455566778998876432110 0 11222 3357
Q ss_pred cCCCceEEEecCCCCCCcccccCCcceEEEEEccCCcchHHHHHHHHHHhhCC--CeEEEEEE
Q 004461 555 HAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHP--GISFIVIR 615 (752)
Q Consensus 555 ~ApC~V~Ilv~rg~~~~~~~~~~~~~~~I~v~~~gg~ddreAL~~a~~ma~~~--~~~ltvl~ 615 (752)
+...|| |++++... .. ..+ +.+.+..+..-+-..+..+.++. ..++.++.
T Consensus 79 ~~~iPv-v~~~~~~~------~~--~~~--~~~V~~d~~~~g~~~~~~l~~~~~~~~~i~~i~ 130 (272)
T cd06301 79 AAGIPL-VYVNRRPE------NA--PKG--VAYVGSDEVVAGRLQAEYVADKLGGKGNVAILM 130 (272)
T ss_pred HCCCeE-EEecCCCC------CC--CCe--eEEEecChHHHHHHHHHHHHHHhCCCccEEEEE
Confidence 788898 56777321 00 012 23444444344445556676662 24555543
No 235
>PRK08578 preprotein translocase subunit SecF; Reviewed
Probab=23.32 E-value=5.5e+02 Score=27.24 Aligned_cols=20 Identities=10% Similarity=0.217 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 004461 234 FVICLTLFVPPTFKWMARQC 253 (752)
Q Consensus 234 ~~~~~~~v~~~~~~~~~~~~ 253 (752)
-.+...++..|+..|+.++.
T Consensus 270 s~~~tl~~~~~~l~~~~~~~ 289 (292)
T PRK08578 270 DLMNTWLLNAGILRWYKTEG 289 (292)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 34455678889999987653
No 236
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=23.23 E-value=1.3e+02 Score=32.98 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhccChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHh
Q 004461 99 LGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLL 146 (752)
Q Consensus 99 lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l 146 (752)
.|+.+.|+..|.+.|++.+++..++...++++-+. .+.+.-..++.+
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~-q~~i~pl~~f~~ 163 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVP-QYLIMPLLGFLL 163 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHH-HHHHHHHHHHhh
Confidence 67888999999999999999988888766543332 454444444443
No 237
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=23.20 E-value=1.5e+02 Score=27.30 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=25.4
Q ss_pred EeEEecCCCChHHHHHHHHHhcCccEEEecCCcccc
Q 004461 498 PMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQR 533 (752)
Q Consensus 498 ~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~ 533 (752)
...++-|...++..|.++|++.++|+||-|..+..-
T Consensus 73 lIYSiRPP~El~~~il~lA~~v~adlii~pL~~e~~ 108 (127)
T PF03686_consen 73 LIYSIRPPPELQPPILELAKKVGADLIIRPLGGESP 108 (127)
T ss_dssp EEEEES--TTSHHHHHHHHHHHT-EEEEE-BTTB--
T ss_pred EEEEeCCChHHhHHHHHHHHHhCCCEEEECCCCCCC
Confidence 344455778999999999999999999999876653
No 238
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=22.73 E-value=67 Score=34.04 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=65.8
Q ss_pred ceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEecCCCCCCc
Q 004461 493 RVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTT 572 (752)
Q Consensus 493 ~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv~rg~~~~~ 572 (752)
+..|-.+-..+ ..+...|++.|++.+...|+.-+.+....-+ -..+.....+..+++++||.+=.|+|.+- .
T Consensus 16 ~yAV~AfN~~n--~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~-----~~~~~~~~~~~a~~~~vPValHLDH~~~~-e 87 (287)
T PF01116_consen 16 GYAVPAFNVYN--LETARAVIEAAEELNSPVILQISPSEVKYMG-----LEYLAAMVKAAAEEASVPVALHLDHGKDF-E 87 (287)
T ss_dssp T-BEEEEE-SS--HHHHHHHHHHHHHTTS-EEEEEEHHHHHHHH-----HHHHHHHHHHHHHHSTSEEEEEEEEE-SH-H
T ss_pred CCeEEEEeeCC--HHHHHHHHHHHHHhCCCEEEEcchhhhhhhh-----HHHHHHHHHHHHHHcCCCEEeecccCCCH-H
Confidence 33444444443 4889999999999999999998876543321 12377888999999999999999997530 0
Q ss_pred cc--ccCCcceEEEEEccCCcch-HHHHH---HHHHHhhCCCeEEE
Q 004461 573 QV--SASNVSYTITVLFFGGRDD-REALA---CGARMAEHPGISFI 612 (752)
Q Consensus 573 ~~--~~~~~~~~I~v~~~gg~dd-reAL~---~a~~ma~~~~~~lt 612 (752)
.. .-...+.. |.+||+..+ +|-++ -+.++|...|+.+-
T Consensus 88 ~i~~ai~~GftS--VM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VE 131 (287)
T PF01116_consen 88 DIKRAIDAGFTS--VMIDGSALPFEENIAITREVVEYAHAYGVSVE 131 (287)
T ss_dssp HHHHHHHHTSSE--EEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHhCccc--ccccCCcCCHHHHHHHHHHHHHhhhhhCCEEE
Confidence 00 00001223 378888655 34443 34556666776654
No 239
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=22.45 E-value=2e+02 Score=34.09 Aligned_cols=27 Identities=11% Similarity=0.073 Sum_probs=14.7
Q ss_pred ccCCCCCCccHHHHHHHHHHHHHHHHHH
Q 004461 20 FQGDSPLDFALPLAILQICLVILLTRGL 47 (752)
Q Consensus 20 ~~~~~pl~~~~~~~l~~i~lil~~~~~~ 47 (752)
++.-||+ ...+.+--..++.++++.++
T Consensus 460 L~sl~p~-s~al~~AAiaGV~LF~SglI 486 (643)
T PF10136_consen 460 LHSLDPF-SPALLYAAIAGVWLFLSGLI 486 (643)
T ss_pred HHhcCcc-ccHHHHHHHHHHHHHHHHHH
Confidence 4567888 34444444455555555544
No 240
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=22.19 E-value=2.6e+02 Score=30.11 Aligned_cols=115 Identities=10% Similarity=0.044 Sum_probs=64.6
Q ss_pred cceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcC--CCceEEEecCCCC
Q 004461 492 SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHA--PCSVGILIDRGLG 569 (752)
Q Consensus 492 ~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~A--pC~V~Ilv~rg~~ 569 (752)
.+..|-.+-... ..+...|++.|++.++.+|+.-+.+.....+.- . -..+........+++ ++||.+=.|+|.+
T Consensus 22 ~~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~-~-~~~~~~~~~~~a~~a~~~VPV~lHLDHg~~ 97 (321)
T PRK07084 22 GGYAIPAYNFNN--MEQLQAIIQACVETKSPVILQVSKGARKYANAT-L-LRYMAQGAVEYAKELGCPIPIVLHLDHGDS 97 (321)
T ss_pred CCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEechhHHhhCCch-H-HHHHHHHHHHHHHHcCCCCcEEEECCCCCC
Confidence 344444554444 488999999999999999999987664433310 0 011333345556666 7899988898753
Q ss_pred CCc-ccccCCcceEEEEEccCCcch-HHHHHH---HHHHhhCCCeEEE
Q 004461 570 GTT-QVSASNVSYTITVLFFGGRDD-REALAC---GARMAEHPGISFI 612 (752)
Q Consensus 570 ~~~-~~~~~~~~~~I~v~~~gg~dd-reAL~~---a~~ma~~~~~~lt 612 (752)
-.. ...-...+.. |.+||+..+ +|=++. ..++|...|+.+-
T Consensus 98 ~e~i~~ai~~GftS--VMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVE 143 (321)
T PRK07084 98 FELCKDCIDSGFSS--VMIDGSHLPYEENVALTKKVVEYAHQFDVTVE 143 (321)
T ss_pred HHHHHHHHHcCCCE--EEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 100 0000011223 366777533 344433 3455666666543
No 241
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=22.04 E-value=1e+03 Score=25.79 Aligned_cols=64 Identities=23% Similarity=0.397 Sum_probs=42.2
Q ss_pred HHHcccCCChhHHHHHHHHhhCccccCchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHhhccChhhHH
Q 004461 49 FILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLR 118 (752)
Q Consensus 49 ~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~ 118 (752)
.+.+.+..|.+++.++ |++++-. ....+.++|.--.+.++.++....-+-||..|..+.....+
T Consensus 237 ~~~~~~~nP~~~a~~l-gli~~~~-----~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~ 300 (385)
T PF03547_consen 237 SILKLFKNPPLIAIIL-GLIIGLI-----PPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRK 300 (385)
T ss_pred HHHHHHhCcHHHHHHH-HHHHHHH-----HHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcc
Confidence 3455667888887664 5776621 11122233333457789999999999999999988766544
No 242
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=21.97 E-value=6.4e+02 Score=23.34 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=65.1
Q ss_pred HHHHHHhhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceE
Q 004461 482 VVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVG 561 (752)
Q Consensus 482 ~~~~~~~~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~ 561 (752)
++.+..+.+..+..+...-. ..+.+++.+.|.+.++|+|.+.+.-.. ....++.+.+.+-+.-+-.+-
T Consensus 20 ~~iv~~~lr~~G~eVi~LG~----~vp~e~i~~~a~~~~~d~V~lS~~~~~--------~~~~~~~~~~~L~~~~~~~~~ 87 (137)
T PRK02261 20 NKILDRALTEAGFEVINLGV----MTSQEEFIDAAIETDADAILVSSLYGH--------GEIDCRGLREKCIEAGLGDIL 87 (137)
T ss_pred HHHHHHHHHHCCCEEEECCC----CCCHHHHHHHHHHcCCCEEEEcCcccc--------CHHHHHHHHHHHHhcCCCCCe
Confidence 34455666667777655332 467899999999999999999875332 222366777666555221233
Q ss_pred EEecCCC-CCCcccc-cCCcce--EEEEEccCCcchHHHHHHHHHHhh
Q 004461 562 ILIDRGL-GGTTQVS-ASNVSY--TITVLFFGGRDDREALACGARMAE 605 (752)
Q Consensus 562 Ilv~rg~-~~~~~~~-~~~~~~--~I~v~~~gg~ddreAL~~a~~ma~ 605 (752)
|++--.. .+..... .....+ -+...|.+|.+.++.+.+.++.++
T Consensus 88 i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 88 LYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred EEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 3332211 0000000 000111 245678888899999988887654
No 243
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=21.77 E-value=1.3e+02 Score=33.75 Aligned_cols=50 Identities=14% Similarity=0.239 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEEE--ecChHHHHHHHHhccC---CCEEEEccCC
Q 004461 638 DEEVLSEFKLKTSRNGSVRYEERL--VRNTAETIAVIREVSR---CNLLLVGRMP 687 (752)
Q Consensus 638 d~~~l~e~~~~~~~~~~v~~~e~~--v~~g~~~~~~i~~~~~---~DLiivG~~~ 687 (752)
-.+.+..++.+.+.-+.+.|-..+ .+.+.|++.+|+.++. +|.+||||+|
T Consensus 149 irDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGG 203 (440)
T COG1570 149 LRDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGG 203 (440)
T ss_pred HHHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCc
Confidence 456677777776544445554333 2446777888877765 9999999998
No 244
>COG4605 CeuC ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
Probab=21.33 E-value=1.1e+02 Score=32.04 Aligned_cols=56 Identities=18% Similarity=0.280 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCchhhhhhccCCCC
Q 004461 32 LAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPK 88 (752)
Q Consensus 32 ~~l~~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp~~ 88 (752)
.|+.+..+.++.+..++..+.+-+=-.+.-.++.|+++|. +++.++.+++.+.+|+
T Consensus 103 ~Fl~~l~~mvlFsl~Ly~~lf~~~~r~l~~~lLiGlv~G~-lFrSiSsfmq~liDPn 158 (316)
T COG4605 103 NFLLELVVMVLFSLLLYYWLFSGGGRDLHLLLLIGLVLGT-LFRSISSFMQRLIDPN 158 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHH-HHHHHHHHHHHHcChH
Confidence 5788888888888888877777766667778899999995 3444555555554443
No 245
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=20.96 E-value=3.7e+02 Score=29.11 Aligned_cols=99 Identities=20% Similarity=0.262 Sum_probs=56.2
Q ss_pred HHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhcCCCCCeEEEEEEe-cChHHHHHHHHh
Q 004461 596 ALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLV-RNTAETIAVIRE 674 (752)
Q Consensus 596 AL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~~~v~~~e~~v-~~g~~~~~~i~~ 674 (752)
|....+|+-+..+... ..+|+.+.... .+..+..+..++ +.+.|.|..- ....||+.++++
T Consensus 34 a~~~v~rfL~~l~~~~-~~~flt~p~~m--------------G~~~~~~~~~~~---~v~~~~~~~~~tTa~DT~~~~r~ 95 (355)
T COG3199 34 AIVRVKRFLKKLDANG-DVEFLTPPGPM--------------GESLAEASGFKY---RVIRFQESTPRTTAEDTINAVRR 95 (355)
T ss_pred HHHHHHHHHHhccccC-ceEEEeCCccc--------------chhHHHhhcCcc---eEEeecccCCCccHHHHHHHHHH
Confidence 4555666666666222 35555554332 133333333332 1222777665 778899999999
Q ss_pred ccC--CCEEEEccCC--CccccccccCCCCCCccc-cchhhhccC
Q 004461 675 VSR--CNLLLVGRMP--DGELALALSTRSDCLELG-PVGSLLTSL 714 (752)
Q Consensus 675 ~~~--~DLiivG~~~--~~~~~~gl~~w~e~peLG-~igd~las~ 714 (752)
|.+ .|||+..-+. ..-+++++ -.+-|.|| +.|-...|.
T Consensus 96 ~~~~gVdlIvfaGGDGTarDVa~av--~~~vPvLGipaGvk~~Sg 138 (355)
T COG3199 96 MVERGVDLIVFAGGDGTARDVAEAV--GADVPVLGIPAGVKNYSG 138 (355)
T ss_pred HHhcCceEEEEeCCCccHHHHHhhc--cCCCceEeeccccceecc
Confidence 998 9999885543 23334444 34677777 344444443
No 246
>PRK04148 hypothetical protein; Provisional
Probab=20.80 E-value=1.4e+02 Score=27.67 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=28.1
Q ss_pred EecCCCChHHHHHHHHHhcCccEEEecCCcccc
Q 004461 501 AISSMSDMHEDICTTAESKRAAIIILPFHKHQR 533 (752)
Q Consensus 501 ~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~ 533 (752)
++-|...++..|.++|++.++|++|-|..+...
T Consensus 83 sirpp~el~~~~~~la~~~~~~~~i~~l~~e~~ 115 (134)
T PRK04148 83 SIRPPRDLQPFILELAKKINVPLIIKPLSGEEP 115 (134)
T ss_pred EeCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 344667999999999999999999999987653
No 247
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=20.41 E-value=3.2e+02 Score=29.17 Aligned_cols=45 Identities=9% Similarity=0.108 Sum_probs=22.3
Q ss_pred HHHHHHHHhhcCCCCCeEEEEEEecChHHHHHHHHhccCCCEEEEccCC
Q 004461 639 EEVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMP 687 (752)
Q Consensus 639 ~~~l~e~~~~~~~~~~v~~~e~~v~~g~~~~~~i~~~~~~DLiivG~~~ 687 (752)
+.++++.+...-.+..+.+... ++=|.=-..++..++ || .++|+|
T Consensus 85 s~~L~~Y~~G~TPNPDI~CN~~-IKFg~~~~~a~en~~-~d--~latGH 129 (377)
T KOG2805|consen 85 SPFLEEYENGRTPNPDILCNKH-IKFGKFFKHAIENLG-YD--WLATGH 129 (377)
T ss_pred HHHHHHHhcCCCCCCCccccce-eeccHHHHHHHHhcC-CC--eEEeee
Confidence 4566666543323344544432 344422234455554 99 666666
No 248
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.30 E-value=6.9e+02 Score=25.21 Aligned_cols=49 Identities=18% Similarity=0.111 Sum_probs=27.2
Q ss_pred cchHHHHHHHhhhccceEEEEeEEecCCCChH--HHHHHHHHhcCccEEEec
Q 004461 478 PNHIVVAFEAFQQLSRVSVRPMTAISSMSDMH--EDICTTAESKRAAIIILP 527 (752)
Q Consensus 478 ~~~i~~~~~~~~~~~~v~v~~~~~v~~~~~~~--~~I~~~A~e~~adLIImg 527 (752)
..++.+.+++..++.+..+.....-+ ..+.. .+..+....+++|-||+.
T Consensus 14 ~~~~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~i~~l~~~~vdgvii~ 64 (273)
T cd06310 14 WQAVKAGAEAAAKELGVKVTFQGPAS-ETDVAGQVNLLENAIARGPDAILLA 64 (273)
T ss_pred HHHHHHHHHHHHHHcCCEEEEecCcc-CCCHHHHHHHHHHHHHhCCCEEEEc
Confidence 35666777777666666554432111 12333 234444566789977774
Done!