Query 004461
Match_columns 752
No_of_seqs 357 out of 2437
Neff 8.3
Searched_HMMs 29240
Date Tue Mar 26 01:51:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mt0_A Uncharacterized protein 99.9 2.1E-24 7.1E-29 228.2 20.6 263 407-727 7-277 (290)
2 3olq_A Universal stress protei 99.9 3E-24 1E-28 229.9 13.2 284 408-728 8-307 (319)
3 3loq_A Universal stress protei 99.9 6.9E-24 2.4E-28 224.6 14.9 269 407-728 22-292 (294)
4 3cis_A Uncharacterized protein 99.9 3.9E-23 1.3E-27 220.4 18.9 280 406-726 18-306 (309)
5 3ab8_A Putative uncharacterize 99.9 2.9E-22 9.8E-27 209.0 17.4 257 409-724 2-267 (268)
6 1zcd_A Na(+)/H(+) antiporter 1 99.7 4.7E-18 1.6E-22 182.3 9.1 274 91-383 58-384 (388)
7 3s3t_A Nucleotide-binding prot 99.6 9.2E-16 3.1E-20 144.0 8.5 137 407-563 5-145 (146)
8 1mjh_A Protein (ATP-binding do 99.6 8.3E-15 2.8E-19 140.2 13.6 144 407-564 5-158 (162)
9 3fdx_A Putative filament prote 99.6 2.6E-15 9E-20 140.3 9.4 136 408-563 2-142 (143)
10 3hgm_A Universal stress protei 99.6 1E-15 3.4E-20 143.8 5.3 141 408-562 3-146 (147)
11 1tq8_A Hypothetical protein RV 99.6 4.8E-15 1.6E-19 142.4 9.6 140 405-564 15-157 (163)
12 2dum_A Hypothetical protein PH 99.5 1.7E-14 6E-19 139.1 11.0 146 408-566 6-157 (170)
13 2z08_A Universal stress protei 99.5 6.7E-15 2.3E-19 136.7 7.3 133 408-563 3-136 (137)
14 3tnj_A Universal stress protei 99.5 4.7E-15 1.6E-19 139.9 6.1 141 407-565 6-147 (150)
15 3dlo_A Universal stress protei 99.5 2.7E-14 9.4E-19 135.9 11.3 130 407-563 24-154 (155)
16 3fg9_A Protein of universal st 99.5 4.7E-15 1.6E-19 141.0 5.7 138 406-563 14-155 (156)
17 2gm3_A Unknown protein; AT3G01 99.5 4.1E-14 1.4E-18 137.3 10.5 145 407-566 5-164 (175)
18 3idf_A USP-like protein; unive 99.5 2.9E-14 9.9E-19 132.4 7.1 134 408-563 2-137 (138)
19 1jmv_A USPA, universal stress 99.5 7.9E-14 2.7E-18 130.0 9.9 135 408-566 3-139 (141)
20 3mt0_A Uncharacterized protein 99.3 1.5E-12 5.1E-17 137.0 7.8 137 406-566 133-277 (290)
21 1q77_A Hypothetical protein AQ 99.3 5.2E-12 1.8E-16 117.1 9.7 131 407-563 4-137 (138)
22 3olq_A Universal stress protei 99.2 2.9E-12 1E-16 136.5 4.0 144 406-568 155-308 (319)
23 3loq_A Universal stress protei 99.2 3.3E-11 1.1E-15 126.9 9.2 122 405-564 168-289 (294)
24 3cis_A Uncharacterized protein 99.1 1.8E-10 6.3E-15 122.1 9.8 133 407-564 171-305 (309)
25 3s3t_A Nucleotide-binding prot 99.1 2E-10 6.9E-15 107.2 8.7 136 579-725 4-146 (146)
26 3dlo_A Universal stress protei 99.0 3.9E-10 1.3E-14 106.9 7.7 130 578-725 22-155 (155)
27 3hgm_A Universal stress protei 99.0 4.7E-10 1.6E-14 104.8 8.0 134 580-724 2-147 (147)
28 1mjh_A Protein (ATP-binding do 99.0 1.4E-09 4.7E-14 103.6 10.6 137 579-726 4-159 (162)
29 3idf_A USP-like protein; unive 99.0 1.5E-09 5.1E-14 100.2 10.4 131 580-724 1-137 (138)
30 1tq8_A Hypothetical protein RV 99.0 1.3E-09 4.4E-14 104.2 10.0 138 577-726 14-158 (163)
31 2dum_A Hypothetical protein PH 98.9 1.7E-09 5.9E-14 103.8 8.9 139 579-727 4-157 (170)
32 3fdx_A Putative filament prote 98.9 2.3E-09 7.9E-14 99.5 9.1 132 581-724 2-142 (143)
33 2z08_A Universal stress protei 98.9 2.4E-09 8.3E-14 98.8 8.9 134 580-725 2-137 (137)
34 3ab8_A Putative uncharacterize 98.9 1.2E-09 4E-14 113.2 6.3 114 407-563 154-267 (268)
35 3tnj_A Universal stress protei 98.9 2.9E-09 9.9E-14 99.8 8.4 136 579-727 5-148 (150)
36 3fg9_A Protein of universal st 98.9 3.6E-09 1.2E-13 100.0 8.1 137 577-725 12-156 (156)
37 2gm3_A Unknown protein; AT3G01 98.8 3.2E-08 1.1E-12 95.4 11.6 138 579-727 4-164 (175)
38 1jmv_A USPA, universal stress 98.7 8.1E-08 2.8E-12 88.8 10.6 132 580-726 2-138 (141)
39 1q77_A Hypothetical protein AQ 98.6 6.1E-08 2.1E-12 89.3 7.8 107 579-687 3-119 (138)
40 3zux_A Transporter, ASBTNM; tr 98.0 0.0025 8.6E-08 67.6 27.9 234 96-351 44-282 (332)
41 3g40_A Na-K-CL cotransporter; 96.4 0.11 3.9E-06 52.7 17.3 218 408-687 21-254 (294)
42 1zun_A Sulfate adenylyltransfe 69.8 7.8 0.00027 40.4 7.1 56 581-649 47-102 (325)
43 3a2k_A TRNA(Ile)-lysidine synt 59.1 31 0.0011 37.6 9.8 60 580-649 18-77 (464)
44 1iv0_A Hypothetical protein; r 55.2 26 0.00089 29.4 6.4 56 507-566 38-93 (98)
45 1ni5_A Putative cell cycle pro 50.2 25 0.00085 38.1 7.0 59 580-649 13-72 (433)
46 1sur_A PAPS reductase; assimil 49.2 66 0.0023 30.7 9.3 52 581-649 45-96 (215)
47 1efp_B ETF, protein (electron 45.8 62 0.0021 32.1 8.5 32 586-618 32-65 (252)
48 1wy5_A TILS, hypothetical UPF0 44.2 25 0.00086 36.2 5.6 59 580-649 24-83 (317)
49 1o97_C Electron transferring f 43.5 45 0.0015 33.4 7.2 34 585-618 31-66 (264)
50 3gxq_A Putative regulator of t 42.8 15 0.0005 25.5 2.2 28 492-523 10-37 (54)
51 1efv_B Electron transfer flavo 42.7 60 0.002 32.3 7.9 33 585-618 34-68 (255)
52 2wsi_A FAD synthetase; transfe 42.7 50 0.0017 33.8 7.5 90 581-687 54-167 (306)
53 2l0e_A Sodium/hydrogen exchang 38.6 9.7 0.00033 25.1 0.8 26 159-184 5-30 (33)
54 3zux_A Transporter, ASBTNM; tr 37.3 2.5E+02 0.0085 28.8 12.0 106 272-383 46-155 (332)
55 3fwk_A FMN adenylyltransferase 32.7 52 0.0018 33.7 5.6 90 581-687 59-170 (308)
56 3qk7_A Transcriptional regulat 32.2 3.1E+02 0.011 26.8 11.6 73 478-567 25-97 (294)
57 2oq2_A Phosphoadenosine phosph 30.9 47 0.0016 33.1 4.9 55 581-649 42-96 (261)
58 1xw8_A UPF0271 protein YBGL; N 30.9 53 0.0018 32.4 5.0 103 483-607 87-198 (252)
59 1b35_D CRPV, protein (cricket 28.1 26 0.00087 25.0 1.6 20 688-707 18-37 (57)
60 2x5e_A UPF0271 protein PA4511; 27.3 61 0.0021 31.9 4.7 108 483-609 98-214 (252)
61 1vhx_A Putative holliday junct 27.0 50 0.0017 30.0 3.9 59 505-566 40-98 (150)
62 3g1w_A Sugar ABC transporter; 26.2 4.6E+02 0.016 25.5 12.0 76 478-568 19-96 (305)
63 4b4t_W RPN10, 26S proteasome r 26.0 1.3E+02 0.0043 30.1 7.0 37 580-618 107-146 (268)
64 1v6t_A Hypothetical UPF0271 pr 25.8 50 0.0017 32.6 3.9 104 483-608 92-204 (255)
65 2k4m_A TR8_protein, UPF0146 pr 25.4 1E+02 0.0034 28.0 5.4 38 497-534 91-128 (153)
66 2dfa_A Hypothetical UPF0271 pr 24.9 50 0.0017 32.6 3.6 105 483-609 92-205 (250)
67 3h75_A Periplasmic sugar-bindi 24.4 2.7E+02 0.0091 28.1 9.7 73 479-568 20-96 (350)
68 1nu0_A Hypothetical protein YQ 23.9 60 0.002 29.0 3.7 57 507-566 40-96 (138)
69 3hut_A Putative branched-chain 22.1 5.9E+02 0.02 25.3 12.0 85 510-615 62-146 (358)
70 3egc_A Putative ribose operon 21.3 5.5E+02 0.019 24.7 12.9 74 479-568 24-97 (291)
71 3m9w_A D-xylose-binding peripl 20.8 2.5E+02 0.0085 27.8 8.4 76 477-568 16-93 (313)
72 3rot_A ABC sugar transporter, 20.4 3.2E+02 0.011 26.7 9.0 77 478-568 18-96 (297)
No 1
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.92 E-value=2.1e-24 Score=228.19 Aligned_cols=263 Identities=12% Similarity=0.060 Sum_probs=190.3
Q ss_pred cceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHHHH
Q 004461 407 QFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFE 486 (752)
Q Consensus 407 e~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 486 (752)
-.|||+|+|+++.+..+++.|..++. ..+.+++++|+++. . + .++.++.+.
T Consensus 7 ~~~ILv~~D~s~~s~~al~~A~~la~---~~~a~l~ll~v~~~-----------------~--------~-~~~~l~~~~ 57 (290)
T 3mt0_A 7 IRSILVVIEPDQLEGLALKRAQLIAG---VTQSHLHLLVCEKR-----------------R--------D-HSAALNDLA 57 (290)
T ss_dssp CCEEEEECCSSCSCCHHHHHHHHHHH---HHCCEEEEEEECSS-----------------S--------C-CHHHHHHHH
T ss_pred hceEEEEeCCCccchHHHHHHHHHHH---hcCCeEEEEEeeCc-----------------H--------H-HHHHHHHHH
Confidence 35899999999999999999999994 47788999999861 0 0 133444444
Q ss_pred HhhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEecC
Q 004461 487 AFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDR 566 (752)
Q Consensus 487 ~~~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv~r 566 (752)
+.....+++++.....+ +++++.|++.|++.++||||||+||+.++++.+ +||+.++|++++||||.++...
T Consensus 58 ~~~~~~~~~~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~------~gs~~~~vl~~~~~PVlvv~~~ 129 (290)
T 3mt0_A 58 QELREEGYSVSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAI------LTPDDWKLLRFAPCPVLMTKTA 129 (290)
T ss_dssp HHHHHTTCCEEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTS------CCHHHHHHHHHCSSCEEEECCC
T ss_pred HHHhhCCCeEEEEEEeC--CCHHHHHHHHHHhcCCCEEEEecccCCchhhcc------cCHHHHHHHhcCCCCEEEecCC
Confidence 44345678888877644 589999999999999999999999998888887 9999999999999998765322
Q ss_pred CCCCCcccccCCcceEEEEEccCCcc-------hHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccc-cCCcCccccH
Q 004461 567 GLGGTTQVSASNVSYTITVLFFGGRD-------DREALACGARMAEHPGISFIVIRFLLAADAIGNTVS-VDMAGNASMD 638 (752)
Q Consensus 567 g~~~~~~~~~~~~~~~I~v~~~gg~d-------dreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~~~-~~~~~~~~~d 638 (752)
. +. ..++|+++++|+++ ++.|+++|.++|+..+++++++++.++......... ...+..++..
T Consensus 130 -~-------~~-~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~ 200 (290)
T 3mt0_A 130 -R-------PW-TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARY 200 (290)
T ss_dssp -S-------CS-TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHH
T ss_pred -C-------CC-CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHH
Confidence 1 12 57899999999998 899999999999999999999999875332100000 0001112223
Q ss_pred HHHHHHHHhhcCCCCCeEEEEEEecChHHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccccchhhhccCCCCc
Q 004461 639 EEVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST 718 (752)
Q Consensus 639 ~~~l~e~~~~~~~~~~v~~~e~~v~~g~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~ 718 (752)
++.++++..++... .+. .....++..+.+....+..++|||+||+|+ .+|+.+| .+|++.+.++..--
T Consensus 201 ~~~l~~~~~~~g~~-~~~-~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g----~~~~~~~----~~Gsv~~~vl~~~~-- 268 (290)
T 3mt0_A 201 REACRTFQAEYGFS-DEQ-LHIEEGPADVLIPRTAQKLDAVVTVIGTVA----RTGLSGA----LIGNTAEVVLDTLE-- 268 (290)
T ss_dssp HHHHHHHHHHHTCC-TTT-EEEEESCHHHHHHHHHHHHTCSEEEEECCS----SCCGGGC----CSCHHHHHHHTTCS--
T ss_pred HHHHHHHHHHcCCC-cce-EEEeccCHHHHHHHHHHhcCCCEEEECCCC----CcCCcce----ecchHHHHHHhcCC--
Confidence 45555665554221 111 122345666655544444459999999999 7888887 79999999998432
Q ss_pred eeEEEEEee
Q 004461 719 ASVLIIQQY 727 (752)
Q Consensus 719 ~svLvvqq~ 727 (752)
+|||||..+
T Consensus 269 ~pVLvv~~~ 277 (290)
T 3mt0_A 269 SDVLVLKPD 277 (290)
T ss_dssp SEEEEECCH
T ss_pred CCEEEECCC
Confidence 799999754
No 2
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.91 E-value=3e-24 Score=229.89 Aligned_cols=284 Identities=12% Similarity=0.065 Sum_probs=190.1
Q ss_pred ceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCc-hhHHHHhhhhcCCCCCCCCCCCCCcchHHHHHH
Q 004461 408 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERS-SAILMVHKARRNGLPFWNRGRQSNPNHIVVAFE 486 (752)
Q Consensus 408 ~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 486 (752)
.|||+|+|+|+++..+++.|..++. ..+.+++++|+++..... ................. +..++.++.+.
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA~---~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~ 79 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIVQ---RNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVI-----NQKTAWIKQQA 79 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHHH---HHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred ceEEEEECCCcccHHHHHHHHHHHH---HcCCeEEEEEEecccchhhccccChhhHHHHHHHHH-----HHHHHHHHHHH
Confidence 5899999999999999999999994 477899999998642110 00000000000000000 11233333333
Q ss_pred HhhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEecC
Q 004461 487 AFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDR 566 (752)
Q Consensus 487 ~~~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv~r 566 (752)
+.....+++++..+... +++.+.|++.|++.++||||||+||+.++++.+ +||++++|++++||||.|+..+
T Consensus 80 ~~~~~~~v~~~~~~~~~--g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~------~Gs~~~~vl~~~~~PVlvv~~~ 151 (319)
T 3olq_A 80 RYYLEAGIQIDIKVIWH--NRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLI------FTPLDWQLLRKCPAPVWMVKDK 151 (319)
T ss_dssp HHHHHTTCCEEEEEEEC--SCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCB------CCHHHHHHHHHCSSCEEEEESS
T ss_pred HHHhhcCCeEEEEEEec--CChHHHHHHHHHhcCCCEEEEecCcCchhhccc------ccccHHHHHhcCCCCEEEecCc
Confidence 33334678888887722 499999999999999999999999998888887 9999999999999999765543
Q ss_pred CCCCCcccccCCcceEEEEEccCCcc-------hHHHHHHHHHHhhCC--CeEEEEEEEeecccccCCccccCC------
Q 004461 567 GLGGTTQVSASNVSYTITVLFFGGRD-------DREALACGARMAEHP--GISFIVIRFLLAADAIGNTVSVDM------ 631 (752)
Q Consensus 567 g~~~~~~~~~~~~~~~I~v~~~gg~d-------dreAL~~a~~ma~~~--~~~ltvl~v~~~~~~~~~~~~~~~------ 631 (752)
. ....++|+++++|+++ ++.|+++|.++|+.. +++++++++.++............
T Consensus 152 ~---------~~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~ 222 (319)
T 3olq_A 152 E---------WPEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYN 222 (319)
T ss_dssp C---------CCTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHH
T ss_pred c---------cccCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHH
Confidence 1 1246899999999995 599999999999988 999999999875432100000000
Q ss_pred cCccccHHHHHHHHHhhcCCCCCeEEEEEEecChHHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccccchhhh
Q 004461 632 AGNASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLL 711 (752)
Q Consensus 632 ~~~~~~d~~~l~e~~~~~~~~~~v~~~e~~v~~g~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~l 711 (752)
++.++..++.++++..++... .+.+ ....++..+.+....+..++||++||+|+ .+|+.+| .+|++.+.+
T Consensus 223 ~~~~~~~~~~l~~~~~~~~~~-~~~~-~v~~g~~~~~I~~~a~~~~~dLiV~G~~g----~~~~~~~----~~Gsv~~~v 292 (319)
T 3olq_A 223 NALRGQHLIAMKELRQKFSIP-EEKT-HVKEGLPEQVIPQVCEELNAGIVVLGILG----RTGLSAA----FLGNTAEQL 292 (319)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC-GGGE-EEEESCHHHHHHHHHHHTTEEEEEEECCS----CCSTHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCC-cccE-EEecCCcHHHHHHHHHHhCCCEEEEeccC----ccCCccc----cccHHHHHH
Confidence 011122245566666554321 2211 22345665554444333349999999998 7788777 689999999
Q ss_pred ccCCCCceeEEEEEeec
Q 004461 712 TSLEFSTASVLIIQQYS 728 (752)
Q Consensus 712 as~~~~~~svLvvqq~~ 728 (752)
+..-- +|||||..+.
T Consensus 293 l~~~~--~pVLvv~~~~ 307 (319)
T 3olq_A 293 IDHIK--CDLLAIKPDG 307 (319)
T ss_dssp HTTCC--SEEEEECCTT
T ss_pred HhhCC--CCEEEECCCC
Confidence 98432 7999997654
No 3
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.90 E-value=6.9e-24 Score=224.58 Aligned_cols=269 Identities=12% Similarity=0.067 Sum_probs=187.1
Q ss_pred cceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHHHH
Q 004461 407 QFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFE 486 (752)
Q Consensus 407 e~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 486 (752)
-.|||+|+|+++++..+++.|..++ +..+.+++++|+++.+...... .. .......+ ...+..++.++.+.
T Consensus 22 ~~~ILv~vD~s~~s~~al~~A~~lA---~~~~a~l~ll~v~~~~~~~~~~---~~--~~~~~~~~-~~~~~~~~~l~~~~ 92 (294)
T 3loq_A 22 SNAMLLPTDLSENSFKVLEYLGDFK---KVGVEEIGVLFVINLTKLSTVS---GG--IDIDHYID-EMSEKAEEVLPEVA 92 (294)
T ss_dssp TCEEEEECCSCTGGGGGGGGHHHHH---HTTCCEEEEECCEECTTC--------C--CCTTHHHH-HHHHHHHHHHHHHH
T ss_pred hccEEEecCCCHHHHHHHHHHHHHH---hhcCCEEEEEEEecCccccccc---cc--ccHHHHHH-HHHHHHHHHHHHHH
Confidence 3589999999999999999999999 4478899999999865422100 00 00000000 00022344455555
Q ss_pred HhhhccceEEEE-eEE-ecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEe
Q 004461 487 AFQQLSRVSVRP-MTA-ISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILI 564 (752)
Q Consensus 487 ~~~~~~~v~v~~-~~~-v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv 564 (752)
+..++.+++++. .+. .+ ++.+.| .|++.++||||||+||+.++.+.+ +||++++|++++||||.|+.
T Consensus 93 ~~~~~~g~~~~~~~v~~~g---~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~------~Gs~~~~vl~~~~~PVlvv~ 161 (294)
T 3loq_A 93 QKIEAAGIKAEVIKPFPAG---DPVVEI--IKASENYSFIAMGSRGASKFKKIL------LGSVSEGVLHDSKVPVYIFK 161 (294)
T ss_dssp HHHHHTTCEEEECSSCCEE---CHHHHH--HHHHTTSSEEEEECCCCCHHHHHH------HCCHHHHHHHHCSSCEEEEC
T ss_pred HHHHHcCCCcceeEeeccC---ChhHhe--eeccCCCCEEEEcCCCCcccccee------eccHHHHHHhcCCCCEEEec
Confidence 554557888887 555 44 899999 999999999999999998777666 89999999999999997654
Q ss_pred cCCCCCCcccccCCcceEEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHH
Q 004461 565 DRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSE 644 (752)
Q Consensus 565 ~rg~~~~~~~~~~~~~~~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~~~~d~~~l~e 644 (752)
.. .. .....++|+++++|++.+++|+++|.++++..+++++++++.++.. .++..+++.+.
T Consensus 162 ~~-~~------~~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~------------~~~~l~~~~~~ 222 (294)
T 3loq_A 162 HD-MV------VNSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD------------KTADLRVMEEV 222 (294)
T ss_dssp CC-TT------TTCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC------------CHHHHHHHHHH
T ss_pred Cc-cc------cCccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch------------HHHHHHHHHHH
Confidence 33 11 1245689999999999999999999999999999999999985321 11222333333
Q ss_pred HHhhcCCCCCeEEEEEEecChHHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccccchhhhccCCCCceeEEEE
Q 004461 645 FKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLII 724 (752)
Q Consensus 645 ~~~~~~~~~~v~~~e~~v~~g~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvv 724 (752)
++.. +-.+. .+...++..+.+....+..++||++||+++ .+++.+| .+|++.+.++..-- .|||||
T Consensus 223 l~~~---~~~~~-~~~~~g~~~~~I~~~a~~~~~dLlV~G~~~----~~~~~~~----~~Gs~~~~vl~~~~--~pvLvv 288 (294)
T 3loq_A 223 IGAE---GIEVH-VHIESGTPHKAILAKREEINATTIFMGSRG----AGSVMTM----ILGSTSESVIRRSP--VPVFVC 288 (294)
T ss_dssp HHHT---TCCEE-EEEECSCHHHHHHHHHHHTTCSEEEEECCC----CSCHHHH----HHHCHHHHHHHHCS--SCEEEE
T ss_pred HHHc---CCcEE-EEEecCCHHHHHHHHHHhcCcCEEEEeCCC----CCCccce----eeCcHHHHHHhcCC--CCEEEE
Confidence 3322 11232 233334554444433333349999999999 7778877 68999999988322 799999
Q ss_pred Eeec
Q 004461 725 QQYS 728 (752)
Q Consensus 725 qq~~ 728 (752)
.+..
T Consensus 289 ~~~~ 292 (294)
T 3loq_A 289 KRGD 292 (294)
T ss_dssp CSCT
T ss_pred CCCC
Confidence 7653
No 4
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.90 E-value=3.9e-23 Score=220.45 Aligned_cols=280 Identities=15% Similarity=0.135 Sum_probs=185.1
Q ss_pred CcceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhH-HHHhhhhcCCCCCCCCCCCCCcchHHHH
Q 004461 406 AQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAI-LMVHKARRNGLPFWNRGRQSNPNHIVVA 484 (752)
Q Consensus 406 ~e~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 484 (752)
...|||+|+|+++.+..+++.|..++. ..+.+++++|+++......+. ..+.+.... . .+..++.++.
T Consensus 18 ~~~~ILv~~D~s~~s~~al~~A~~lA~---~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~l~~ 86 (309)
T 3cis_A 18 SSLGIIVGIDDSPAAQVAVRWAARDAE---LRKIPLTLVHAVSPEVATWLEVPLPPGVLRW---Q-----QDHGRHLIDD 86 (309)
T ss_dssp CTTEEEEECCSSHHHHHHHHHHHHHHH---HHTCCEEEEEECCCCCCCTTCCCCCHHHHHH---H-----HHHHHHHHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHHHHHH---hcCCcEEEEEEecCcccccccCCCCchhhHH---H-----HHHHHHHHHH
Confidence 357899999999999999999999994 467789999999732110000 000000000 0 0112333333
Q ss_pred HHHhhhc-----cceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCc
Q 004461 485 FEAFQQL-----SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCS 559 (752)
Q Consensus 485 ~~~~~~~-----~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~ 559 (752)
+.+..++ .+++++..+..+ ++++.|++.|+ ++||||||+||++++.+.+ +||++++|++++|||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~------~Gs~~~~vl~~~~~P 155 (309)
T 3cis_A 87 ALKVVEQASLRAGPPTVHSEIVPA---AAVPTLVDMSK--DAVLMVVGCLGSGRWPGRL------LGSVSSGLLRHAHCP 155 (309)
T ss_dssp HHHHHHHHCSSSCCSCEEEEEESS---CHHHHHHHHGG--GEEEEEEESSCTTCCTTCC------SCHHHHHHHHHCSSC
T ss_pred HHHHHHHhcccCCCceEEEEEecC---CHHHHHHHHhc--CCCEEEECCCCCccccccc------cCcHHHHHHHhCCCC
Confidence 3333222 277888777655 89999999997 8999999999998888888 999999999999999
Q ss_pred eEEEecCCCCCCcccccCCcceEEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHH
Q 004461 560 VGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDE 639 (752)
Q Consensus 560 V~Ilv~rg~~~~~~~~~~~~~~~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~~~~d~ 639 (752)
|.|+...... ......++|+++++|++.++.|+++|.++|+..+++++++++.++.... .....+.+..++..+
T Consensus 156 Vlvv~~~~~~-----~~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~-~~~~~~~~~~~~~~~ 229 (309)
T 3cis_A 156 VVIIHDEDSV-----MPHPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVS-EWPGIDWPATQSMAE 229 (309)
T ss_dssp EEEECTTCCC-----SCSSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCT-TCSSCCHHHHHHHHH
T ss_pred EEEEcCCccc-----CCCCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeeccccc-CCCcccHHHHHHHHH
Confidence 9765433110 1123467999999999999999999999999999999999998653221 000000011111223
Q ss_pred HHHHHHHhhcC---CCCCeEEEEEEecChHHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccccchhhhccCCC
Q 004461 640 EVLSEFKLKTS---RNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEF 716 (752)
Q Consensus 640 ~~l~e~~~~~~---~~~~v~~~e~~v~~g~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~~ 716 (752)
+.+++...+.. .+-.+.+ +...++..+.+.... .++||+|||+++ .+++.+| .+|++.+.++..--
T Consensus 230 ~~l~~~~~~~~~~~~~~~~~~-~~~~g~~~~~I~~~a--~~adliV~G~~~----~~~~~~~----l~Gsv~~~vl~~~~ 298 (309)
T 3cis_A 230 QVLAERLAGWQERYPNVAITR-VVVRDQPARQLVQRS--EEAQLVVVGSRG----RGGYAGM----LVGSVGETVAQLAR 298 (309)
T ss_dssp HHHHHHHTTHHHHCTTSCEEE-EEESSCHHHHHHHHH--TTCSEEEEESSC----SSCCTTC----SSCHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhhCCCCcEEE-EEEcCCHHHHHHHhh--CCCCEEEECCCC----CCCcccc----ccCcHHHHHHhcCC
Confidence 34444433221 1122332 233344544433333 369999999999 6777776 78999999987432
Q ss_pred CceeEEEEEe
Q 004461 717 STASVLIIQQ 726 (752)
Q Consensus 717 ~~~svLvvqq 726 (752)
.|||||..
T Consensus 299 --~pVlvv~~ 306 (309)
T 3cis_A 299 --TPVIVARE 306 (309)
T ss_dssp --SCEEEECC
T ss_pred --CCEEEeCC
Confidence 79999964
No 5
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.88 E-value=2.9e-22 Score=209.03 Aligned_cols=257 Identities=15% Similarity=0.068 Sum_probs=172.4
Q ss_pred eEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCC-------CCCCCCCCcchH
Q 004461 409 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPF-------WNRGRQSNPNHI 481 (752)
Q Consensus 409 rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~i 481 (752)
|||+|+|+|+++..+++.|..++. ..+.+++++|+++.............. ..... .+ ...+..++.
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~---~~~a~l~ll~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~ 75 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAY---KLSAPLTVLFVVDTRLARIPELLDFGA--LTVPVPVLRTELER-ALALRGEAV 75 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHH---HHTCCEEEEEEEEHHHHTHHHHC---------CHHHHHHHHHH-HHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHH---HhCCcEEEEEEeccCCcccccccCchH--HHHHHHHHHHHHHH-HHHHHHHHH
Confidence 799999999999999999999994 467789999999754211000000000 00000 00 000112344
Q ss_pred HHHHHHhhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCccc-ccCCccccccchhHHHHHHHhhcCCCce
Q 004461 482 VVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQ-RLDGSLETTRSDFRWVNQRVLKHAPCSV 560 (752)
Q Consensus 482 ~~~~~~~~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~-~~~g~~~~~~~~~gsv~~~Vl~~ApC~V 560 (752)
++.+.+..++.+++++..+..+ ++.+.|+++ +.++||||||+||++ ++++.+ +||++++|++++||||
T Consensus 76 l~~~~~~~~~~g~~~~~~~~~g---~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~------~Gs~~~~v~~~a~~PV 144 (268)
T 3ab8_A 76 LERVRQSALAAGVAVEAVLEEG---VPHEAILRR--ARAADLLVLGRSGEAHGDGFGG------LGSTADRVLRASPVPV 144 (268)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEE---CHHHHHHHH--HTTCSEEEEESSCTTSCTTCCS------CCHHHHHHHHHCSSCE
T ss_pred HHHHHHHHHhCCCCeEEEEecC---CHHHHHHhh--ccCCCEEEEeccCCCccccccc------cchhHHHHHHhCCCCE
Confidence 4444444444678888877765 899999999 999999999999998 888877 9999999999999999
Q ss_pred EEEecCCCCCCcccccCCcceEEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHH
Q 004461 561 GILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEE 640 (752)
Q Consensus 561 ~Ilv~rg~~~~~~~~~~~~~~~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~~~~d~~ 640 (752)
.|+... . . ..++|+++++|+++++.|+++|.++++..+++++++++.++... .++
T Consensus 145 lvv~~~-~-------~--~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~~---------------~~~ 199 (268)
T 3ab8_A 145 LLAPGE-P-------V--ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPAR---------------AEA 199 (268)
T ss_dssp EEECSS-C-------C--CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHHH---------------HHH
T ss_pred EEECCC-C-------C--CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcHHH---------------HHH
Confidence 664322 1 1 45799999999999999999999999999999999999854211 122
Q ss_pred HHHHHHhhcCC-CCCeEEEEEEecChHHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccccchhhhccCCCCce
Q 004461 641 VLSEFKLKTSR-NGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTA 719 (752)
Q Consensus 641 ~l~e~~~~~~~-~~~v~~~e~~v~~g~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~ 719 (752)
.+++++..... +-.+.+. ...++. ...+++...++||++||+ + +.+| .+|++.+.+...-- .
T Consensus 200 ~l~~~~~~l~~~~~~~~~~-~~~g~~--~~~i~~~a~~~dliV~G~-~-------~~~~----~~Gs~~~~vl~~~~--~ 262 (268)
T 3ab8_A 200 WALEAEAYLRDHGVEASAL-VLGGDA--ADHLLRLQGPGDLLALGA-P-------VRRL----VFGSTAERVIRNAQ--G 262 (268)
T ss_dssp HHHHHHHHHHHTTCCEEEE-EECSCH--HHHHHHHCCTTEEEEEEC-C-------CSCC----SSCCHHHHHHHHCS--S
T ss_pred HHHHHHHHHHHcCCceEEE-EeCCCh--HHHHHHHHHhCCEEEECC-c-------cccc----EeccHHHHHHhcCC--C
Confidence 33333322211 1123222 222333 334444444479999999 3 3444 57888888887321 6
Q ss_pred eEEEE
Q 004461 720 SVLII 724 (752)
Q Consensus 720 svLvv 724 (752)
|||||
T Consensus 263 pvlvv 267 (268)
T 3ab8_A 263 PVLTA 267 (268)
T ss_dssp CEEEE
T ss_pred CEEEe
Confidence 88887
No 6
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.72 E-value=4.7e-18 Score=182.25 Aligned_cols=274 Identities=18% Similarity=0.192 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhhH----HhcCc--hhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHH
Q 004461 91 TVLDTLANLGLIFFMFLVGLELDPKSL----RQTGK--KALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMG 164 (752)
Q Consensus 91 ~~l~~l~~lgl~~llF~~Gle~d~~~l----~~~~~--~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~ 164 (752)
...+.+.+-.+.++||.+|+|+|.+.+ ++.+| .....++.|+++|+++.. .+.. +. ..+....
T Consensus 58 ~l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~----~~~~----~~---~~~~~gw 126 (388)
T 1zcd_A 58 NMLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYL----AFNY----AD---PITREGW 126 (388)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG----GGCC----SS---TTHHHHT
T ss_pred cHHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHH----HHhc----CC---hhhhhhh
Confidence 356778889999999999999999977 55555 377889999999998732 2221 11 2244555
Q ss_pred HHHhhccHHHHHHHHHHccc-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 004461 165 VALSITAFPVLARILAELKL-LTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVP 243 (752)
Q Consensus 165 ~~ls~Ts~~vv~~iL~el~l-l~s~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~~ 243 (752)
.+.+.|+.+....++..++. .++..+..+++.+++||+.+|++++++.. ++.+ . .+... .+++.+...++.|
T Consensus 127 ~ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~~~-~--~~l~~-~~~~~~~~~~l~r 199 (388)
T 1zcd_A 127 AIPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---NDLS-M--ASLGV-AAVAIAVLAVLNL 199 (388)
T ss_dssp SSSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CCCC-H--HHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CCcc-H--HHHHH-HHHHHHHHHHHHH
Confidence 56677999999999999865 45667799999999999999999987743 2211 1 11111 1111111121111
Q ss_pred H------------HHHHHHHhcCC---------------------CchHHHHHHHHHHHHHHhhHHHH-HHHhhccccch
Q 004461 244 P------------TFKWMARQCHE---------------------GPFANALVEKVEDLVSGIFLPLY-FVSSGLKTNIA 289 (752)
Q Consensus 244 ~------------~~~~~~~~~~e---------------------g~~~~~l~~kl~~~~~~~~~piF-Fv~~Gl~~d~~ 289 (752)
+ +..|..-.... .+..+++++++++++..+++|+| |+..|+++|..
T Consensus 200 ~~v~~~~~y~~lgl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilPlFaFanaGv~l~~~ 279 (388)
T 1zcd_A 200 CGARRTGVYILVGVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGVSLQGV 279 (388)
T ss_dssp TTCCCTHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHHHHHHHHCCCCCSSS
T ss_pred hcchhHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCeeeccc
Confidence 1 12233211111 13468899999999989999999 99999999975
Q ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhHHHHHHHHHhhhccCC--CC
Q 004461 290 TIQGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGLVELIVLNIGKDRKV--LN 357 (752)
Q Consensus 290 ~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl~l~~rG~v~l~l~~~~~~~~~--i~ 357 (752)
....... .....+++..+++|++|++..++.. +++|+|...+|++++.++++++++++.+.+.+. +.
T Consensus 280 ~~~~l~~-~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~Ia~laf~~~~~~~~ 358 (388)
T 1zcd_A 280 TLDGLTS-ILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFIASLAFGSVDPELI 358 (388)
T ss_dssp CCCTHHH-HSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHHHHHHHSTTSSCSSH
T ss_pred chhhccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHHHHHHHhccCCchhhH
Confidence 3221101 1122445556889999955555554 899999999999999999999999999998876 35
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004461 358 DQVFAIMILMAVVTTFMTTPLVMAVY 383 (752)
Q Consensus 358 ~~~~~~lv~~~lv~t~i~~pl~~~l~ 383 (752)
++.+..+++++++++.+.+.++++.+
T Consensus 359 ~~ak~~il~~s~~s~i~g~~~L~~~~ 384 (388)
T 1zcd_A 359 NWAKLGILVGSISSAVIGYSWLRVRL 384 (388)
T ss_dssp HHHHHHHHHHHHTTTSTTTGGGTTTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66788887888876666665555433
No 7
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.60 E-value=9.2e-16 Score=144.01 Aligned_cols=137 Identities=12% Similarity=0.129 Sum_probs=104.7
Q ss_pred cceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHH--HHhhhhcCCCCCCCCCCCCCcchHHHH
Q 004461 407 QFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAIL--MVHKARRNGLPFWNRGRQSNPNHIVVA 484 (752)
Q Consensus 407 e~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~ 484 (752)
-.|||+|+|+++++..+++.|..++. ..+.+++++|+++.+....... ...+..... .+..++.++.
T Consensus 5 ~~~ILv~~D~s~~s~~al~~A~~la~---~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~ 73 (146)
T 3s3t_A 5 YTNILVPVDSSDAAQAAFTEAVNIAQ---RHQANLTALYVVDDSAYHTPALDPVLSELLDAE--------AAHAKDAMRQ 73 (146)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHH---HHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHH--------HHHHHHHHHH
T ss_pred cceEEEEcCCCHHHHHHHHHHHHHHH---hcCCEEEEEEEecCccccccccccccHHHHHHH--------HHHHHHHHHH
Confidence 35899999999999999999999994 4678899999998754322111 001100000 0223455555
Q ss_pred HHHhhhccce-EEEEeEEecCCCChHHHHHH-HHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEE
Q 004461 485 FEAFQQLSRV-SVRPMTAISSMSDMHEDICT-TAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 562 (752)
Q Consensus 485 ~~~~~~~~~v-~v~~~~~v~~~~~~~~~I~~-~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~I 562 (752)
+.+..++.++ .++..+..+ ++.+.|++ +|++.++||||||.||++++.+.+ +||++++|++++||||.|
T Consensus 74 ~~~~~~~~g~~~~~~~~~~g---~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlv 144 (146)
T 3s3t_A 74 RQQFVATTSAPNLKTEISYG---IPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVA------VGSTTSYVVDHAPCNVIV 144 (146)
T ss_dssp HHHHHTTSSCCCCEEEEEEE---CHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCS------SCHHHHHHHHHCSSEEEE
T ss_pred HHHHHHhcCCcceEEEEecC---ChHHHHHHHHHhhcCCCEEEECCCCCCCcceEE------EcchHHHHhccCCCCEEE
Confidence 5555555677 888877776 89999999 999999999999999999988888 999999999999999876
Q ss_pred E
Q 004461 563 L 563 (752)
Q Consensus 563 l 563 (752)
+
T Consensus 145 V 145 (146)
T 3s3t_A 145 I 145 (146)
T ss_dssp E
T ss_pred e
Confidence 4
No 8
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.59 E-value=8.3e-15 Score=140.16 Aligned_cols=144 Identities=17% Similarity=0.171 Sum_probs=100.7
Q ss_pred cceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccC----CchhHH-----H-HhhhhcCCCCCCCCCCCC
Q 004461 407 QFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSE----RSSAIL-----M-VHKARRNGLPFWNRGRQS 476 (752)
Q Consensus 407 e~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~----~~~~~~-----~-~~~~~~~~~~~~~~~~~~ 476 (752)
-.|||+|+|+++.+..+++.+..++ +..+.+++++|+++... ...... . +..... .....++ ..+
T Consensus 5 ~~~ILv~vD~s~~s~~al~~a~~la---~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~ 79 (162)
T 1mjh_A 5 YKKILYPTDFSETAEIALKHVKAFK---TLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEF-ENELKNK-LTE 79 (162)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHTC---CSSCCEEEEEEEEEGGGTC-----------------CHHH-HHHHHHH-HHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHH---hhcCCeEEEEEEecCccccccccccccccccccccchhhh-HHHHHHH-HHH
Confidence 3589999999999999999999999 44788999999997541 000000 0 000000 0000000 001
Q ss_pred CcchHHHHHHHhhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcC
Q 004461 477 NPNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHA 556 (752)
Q Consensus 477 ~~~~i~~~~~~~~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~A 556 (752)
..++.++.+.+..+..+++++..+..+ ++++.|+++|++.++||||||+||++++.+.+ +||++++|++++
T Consensus 80 ~~~~~l~~~~~~~~~~g~~~~~~v~~G---~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~------~GSv~~~vl~~~ 150 (162)
T 1mjh_A 80 EAKNKMENIKKELEDVGFKVKDIIVVG---IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEIL------LGSVTENVIKKS 150 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCSSCCTTCS------SCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCceEEEEcCC---CHHHHHHHHHHHcCCCEEEEcCCCCCCccceE------ecchHHHHHHhC
Confidence 123344444443344678888777666 89999999999999999999999999888888 999999999999
Q ss_pred CCceEEEe
Q 004461 557 PCSVGILI 564 (752)
Q Consensus 557 pC~V~Ilv 564 (752)
||||.|+.
T Consensus 151 ~~pVlvv~ 158 (162)
T 1mjh_A 151 NKPVLVVK 158 (162)
T ss_dssp CSCEEEEC
T ss_pred CCCEEEEe
Confidence 99997653
No 9
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.58 E-value=2.6e-15 Score=140.32 Aligned_cols=136 Identities=18% Similarity=0.158 Sum_probs=98.5
Q ss_pred ceEEEEeecCCC--hhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHHH
Q 004461 408 FRILACFHSARN--IPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAF 485 (752)
Q Consensus 408 ~rILv~v~~s~~--~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 485 (752)
.|||+|+|+++. +..+++.+..++ +..+.+++++|+++.............. . ....+ +..++..+.+
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la---~~~~a~l~ll~v~~~~~~~~~~~~~~~~--~-~~~~~----~~~~~~~~~l 71 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEA---RIDDAEVHFLTVIPSLPYYASLGMAYTA--E-LPGMD----ELREGSETQL 71 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHH---HHHTCEEEEEEEECC-------------------CHH----HHHHHHHHHH
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHH---HhcCCeEEEEEEecCCcccccccccccc--h-hhhHH----HHHHHHHHHH
Confidence 589999999999 999999999999 4477899999999865322111100000 0 00000 2234566666
Q ss_pred HHhhhcc---ceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEE
Q 004461 486 EAFQQLS---RVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 562 (752)
Q Consensus 486 ~~~~~~~---~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~I 562 (752)
+++.++. ++.++..+..+ ++.+.|+++|++.++||||||.|| .++.+.+ +||++++|++++||||.|
T Consensus 72 ~~~~~~~~~~~~~v~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~------~Gs~~~~v~~~~~~pVlv 141 (143)
T 3fdx_A 72 KEIAKKFSIPEDRMHFHVAEG---SPKDKILALAKSLPADLVIIASHR-PDITTYL------LGSNAAAVVRHAECSVLV 141 (143)
T ss_dssp HHHHTTSCCCGGGEEEEEEES---CHHHHHHHHHHHTTCSEEEEESSC-TTCCSCS------SCHHHHHHHHHCSSEEEE
T ss_pred HHHHHHcCCCCCceEEEEEec---ChHHHHHHHHHHhCCCEEEEeCCC-CCCeeee------eccHHHHHHHhCCCCEEE
Confidence 6666653 35567777766 999999999999999999999996 7777777 999999999999999876
Q ss_pred E
Q 004461 563 L 563 (752)
Q Consensus 563 l 563 (752)
+
T Consensus 142 v 142 (143)
T 3fdx_A 142 V 142 (143)
T ss_dssp E
T ss_pred e
Confidence 4
No 10
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.57 E-value=1e-15 Score=143.83 Aligned_cols=141 Identities=16% Similarity=0.123 Sum_probs=100.1
Q ss_pred ceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHHHHH
Q 004461 408 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 487 (752)
Q Consensus 408 ~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 487 (752)
.|||+|+|+++++..+++.+..++. ..+.+++++|+++.+............... ....+ ...+..++.++.+.+
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~---~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~l~~~~~ 77 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQ---LTGAELYILCVFKHHSLLEASLSMARPEQL-DIPDD-ALKDYATEIAVQAKT 77 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHH---HHCCEEEEEEEECCHHHHHHTBSSCCCGGG-CCCTT-HHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHH---hcCCEEEEEEEecCcccccccccccChhhh-hhHHH-HHHHHHHHHHHHHHH
Confidence 4899999999999999999999994 467899999999754211110000000000 00000 000223444445554
Q ss_pred hhhccceEE---EEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEE
Q 004461 488 FQQLSRVSV---RPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 562 (752)
Q Consensus 488 ~~~~~~v~v---~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~I 562 (752)
..++.++++ +..+..+ ++++.|+++|++.++||||||.||++++.+.+ +||++++|++++||||.|
T Consensus 78 ~~~~~g~~~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlv 146 (147)
T 3hgm_A 78 RATELGVPADKVRAFVKGG---RPSRTIVRFARKRECDLVVIGAQGTNGDKSLL------LGSVAQRVAGSAHCPVLV 146 (147)
T ss_dssp HHHHTTCCGGGEEEEEEES---CHHHHHHHHHHHTTCSEEEECSSCTTCCSCCC------CCHHHHHHHHHCSSCEEE
T ss_pred HHHhcCCCccceEEEEecC---CHHHHHHHHHHHhCCCEEEEeCCCCcccccee------eccHHHHHHhhCCCCEEE
Confidence 444466666 7777665 89999999999999999999999999888888 999999999999999865
No 11
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.57 E-value=4.8e-15 Score=142.41 Aligned_cols=140 Identities=10% Similarity=0.069 Sum_probs=101.2
Q ss_pred CCcceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEE--EeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHH
Q 004461 405 KAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYAL--HLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIV 482 (752)
Q Consensus 405 ~~e~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~L--hvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 482 (752)
....|||+|+|+++.+..+++.|..++ + .+.+++++ |+++.+....+.....+ .. .... .+..++.+
T Consensus 15 ~~~~~ILv~vD~s~~s~~al~~A~~lA---~-~~a~l~ll~a~v~~~~~~~~~~~~~~~-~~-~~~~-----~~~~~~~l 83 (163)
T 1tq8_A 15 SAYKTVVVGTDGSDSSMRAVDRAAQIA---G-ADAKLIIASAYLPQHEDARAADILKDE-SY-KVTG-----TAPIYEIL 83 (163)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHH---T-TTSEEEEEEECCC---------------------------CCTHHHHH
T ss_pred ccCCEEEEEcCCCHHHHHHHHHHHHHh---C-CCCEEEEEEeeeccCcccccccccccH-HH-HHHH-----HHHHHHHH
Confidence 345789999999999999999999999 6 78899999 88865431011100000 00 0000 13455666
Q ss_pred HHHHHhhhccceE-EEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceE
Q 004461 483 VAFEAFQQLSRVS-VRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVG 561 (752)
Q Consensus 483 ~~~~~~~~~~~v~-v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~ 561 (752)
+.+.+..++.+++ ++..+..+ ++.+.|+++|++.++||||||+||++++.+.+ +||++++|++++||||.
T Consensus 84 ~~~~~~~~~~gv~~v~~~v~~G---~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~------lGSva~~vl~~a~~PVl 154 (163)
T 1tq8_A 84 HDAKERAHNAGAKNVEERPIVG---APVDALVNLADEEKADLLVVGNVGLSTIAGRL------LGSVPANVSRRAKVDVL 154 (163)
T ss_dssp HHHHHHHHTTTCCEEEEEEECS---SHHHHHHHHHHHTTCSEEEEECCCCCSHHHHH------TBBHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCeEEEEEecC---CHHHHHHHHHHhcCCCEEEECCCCCCccccee------eccHHHHHHHhCCCCEE
Confidence 6665555556777 87777655 89999999999999999999999998887777 99999999999999997
Q ss_pred EEe
Q 004461 562 ILI 564 (752)
Q Consensus 562 Ilv 564 (752)
|+.
T Consensus 155 vV~ 157 (163)
T 1tq8_A 155 IVH 157 (163)
T ss_dssp EEC
T ss_pred EEe
Confidence 654
No 12
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.54 E-value=1.7e-14 Score=139.13 Aligned_cols=146 Identities=14% Similarity=0.086 Sum_probs=97.7
Q ss_pred ceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhH-HHH--h-hhhcCCCCCCCCCCCCCcchHHH
Q 004461 408 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAI-LMV--H-KARRNGLPFWNRGRQSNPNHIVV 483 (752)
Q Consensus 408 ~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~-~~~--~-~~~~~~~~~~~~~~~~~~~~i~~ 483 (752)
.|||+|+|+++.+..+++.|..++ +..+.+++++|+++........ ... + ..........++ ..+..++.++
T Consensus 6 ~~ILv~vD~s~~s~~al~~A~~la---~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ 81 (170)
T 2dum_A 6 RKVLFPTDFSEGAYRAVEVFEKRN---KMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEK-LKEEASRKLQ 81 (170)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHC---CSCCSEEEEEEEEETTGGGCCC------------CCTTSHHH-HHHHHHHHHH
T ss_pred ceEEEEecCCHHHHHHHHHHHHHH---HhcCCEEEEEEEecCccccccccccccccccccccHHHHHHH-HHHHHHHHHH
Confidence 589999999999999999999999 4578899999999753211000 000 0 000000000000 0011233333
Q ss_pred HHHHhhhccceEEEE--eEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceE
Q 004461 484 AFEAFQQLSRVSVRP--MTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVG 561 (752)
Q Consensus 484 ~~~~~~~~~~v~v~~--~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~ 561 (752)
.+.+..+..+++++. .+..+ ++++.|+++|++.++||||||.||++++.+.+ +||++++|++++||||.
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~g---~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~------~Gsv~~~vl~~~~~PVl 152 (170)
T 2dum_A 82 EKAEEVKRAFRAKNVRTIIRFG---IPWDEIVKVAEEENVSLIILPSRGKLSLSHEF------LGSTVMRVLRKTKKPVL 152 (170)
T ss_dssp HHHHHHHHHTTCSEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCCCC--TTC------CCHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHcCCceeeeeEEecC---ChHHHHHHHHHHcCCCEEEECCCCCCccccce------echHHHHHHHhCCCCEE
Confidence 333333334666666 56555 89999999999999999999999999888888 99999999999999997
Q ss_pred EEecC
Q 004461 562 ILIDR 566 (752)
Q Consensus 562 Ilv~r 566 (752)
|+..+
T Consensus 153 vv~~~ 157 (170)
T 2dum_A 153 IIKEV 157 (170)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 76544
No 13
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.53 E-value=6.7e-15 Score=136.69 Aligned_cols=133 Identities=17% Similarity=0.168 Sum_probs=94.8
Q ss_pred ceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHHHHH
Q 004461 408 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 487 (752)
Q Consensus 408 ~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 487 (752)
.|||+|+|+++.+..+++.+..++. ..+.+++++|+++.... .. ... ......+ +..++..+.+++
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~---~~~a~l~ll~v~~~~~~--~~---~~~--~~~~~~~----~~~~~~~~~l~~ 68 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAE---AHGARLIVVHAYEPVPD--YL---GEP--FFEEALR----RRLERAEGVLEE 68 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHH---HHTCEEEEEEEECC---------------------C----HHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHh---hcCCEEEEEEEecCCCc--cc---ccc--chHHHHH----HHHHHHHHHHHH
Confidence 4899999999999999999999994 46788999999873211 11 000 0000000 112233334444
Q ss_pred hhhccce-EEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEE
Q 004461 488 FQQLSRV-SVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 563 (752)
Q Consensus 488 ~~~~~~v-~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Il 563 (752)
+.+..++ +++..+..+ ++.+.|+++|++.++||||||+||++++.+.+ +||++++|++++||||.|+
T Consensus 69 ~~~~~g~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 69 ARALTGVPKEDALLLEG---VPAEAILQAARAEKADLIVMGTRGLGALGSLF------LGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp HHHHHCCCGGGEEEEES---SHHHHHHHHHHHTTCSEEEEESSCTTCCSCSS------SCHHHHHHHHHCSSCEEEE
T ss_pred HHHHcCCCccEEEEEec---CHHHHHHHHHHHcCCCEEEECCCCCchhhhhh------hccHHHHHHhcCCCCEEEe
Confidence 4433455 555555544 89999999999999999999999999888887 9999999999999999764
No 14
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.53 E-value=4.7e-15 Score=139.88 Aligned_cols=141 Identities=13% Similarity=0.113 Sum_probs=89.6
Q ss_pred cceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHHHH
Q 004461 407 QFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFE 486 (752)
Q Consensus 407 e~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 486 (752)
-.|||+|+|+++++..+++.|..++. ..+.+++++|+++......... ............+ +..++..+.++
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~---~~~a~l~ll~v~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~l~ 77 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLAS---QIGARLSLIHVLDNIPMPDTPY-GTAIPLDTETTYD----AMLDVEKQKLS 77 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHH---HHTCEEEEEEEEC--------C-TTCCCSSSCCCHH----HHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHh---hcCCEEEEEEEEcCcccccccc-ccccCcCHHHHHH----HHHHHHHHHHH
Confidence 35899999999999999999999994 4678899999997543210000 0000000000000 11233444455
Q ss_pred HhhhccceE-EEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEec
Q 004461 487 AFQQLSRVS-VRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILID 565 (752)
Q Consensus 487 ~~~~~~~v~-v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv~ 565 (752)
++.++.++. ++..+..+ ++.+.|+++|++.++||||||.||++++. .+ +||++++|++++||||.|+..
T Consensus 78 ~~~~~~~~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~------~Gs~~~~vl~~~~~pVlvv~~ 147 (150)
T 3tnj_A 78 QIGNTLGIDPAHRWLVWG---EPREEIIRIAEQENVDLIVVGSHGRHGLA-LL------LGSTANSVLHYAKCDVLAVRL 147 (150)
T ss_dssp HHHHHHTCCGGGEEEEES---CHHHHHHHHHHHTTCSEEEEEEC---------------CCCHHHHHHHHCSSEEEEEEC
T ss_pred HHHHHcCCCcceEEEecC---CHHHHHHHHHHHcCCCEEEEecCCCCCcC-eE------ecchHHHHHHhCCCCEEEEeC
Confidence 555443444 34445444 99999999999999999999999998887 77 999999999999999977644
No 15
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.53 E-value=2.7e-14 Score=135.86 Aligned_cols=130 Identities=13% Similarity=0.124 Sum_probs=99.9
Q ss_pred cceEEEEeec-CCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHHH
Q 004461 407 QFRILACFHS-ARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAF 485 (752)
Q Consensus 407 e~rILv~v~~-s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 485 (752)
-.|||+|+|+ ++.+..+++.|..++. ..+.+++++|+++.+..... ... +..++.++.+
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~---~~~a~l~llhV~~~~~~~~~-----~~~------------~~~~~~l~~~ 83 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEAR---LRGVPVYVVHSLPGGGRTKD-----EDI------------IEAKETLSWA 83 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHH---HHTCCEEEEEEECCSTTSCH-----HHH------------HHHHHHHHHH
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHH---hcCCEEEEEEEEcCCCcccH-----HHH------------HHHHHHHHHH
Confidence 4689999999 9999999999999994 46778899999975432110 000 1234555555
Q ss_pred HHhhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEE
Q 004461 486 EAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 563 (752)
Q Consensus 486 ~~~~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Il 563 (752)
.+..++.++.++..+.+ ..+++.+.|+++|++.++||||||.||+.++.+.+ +||++++|++++||||.|+
T Consensus 84 ~~~~~~~g~~~~~~~~v-~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~------lGSv~~~vl~~a~~PVLvV 154 (155)
T 3dlo_A 84 VSIIRKEGAEGEEHLLV-RGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLI------FGSVARDVILKANKPVICI 154 (155)
T ss_dssp HHHHHHTTCCEEEEEEE-SSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEE------CCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHhcCCCceEEEEe-cCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEE------eccHHHHHHHhCCCCEEEe
Confidence 55555556666554433 22599999999999999999999999999888888 9999999999999998764
No 16
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.53 E-value=4.7e-15 Score=141.02 Aligned_cols=138 Identities=12% Similarity=0.124 Sum_probs=100.1
Q ss_pred CcceEEEEee--cCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHH
Q 004461 406 AQFRILACFH--SARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVV 483 (752)
Q Consensus 406 ~e~rILv~v~--~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 483 (752)
.-.|||+|+| +++.+..+++.+..++. ..+.+++++|+++............+.... . .+..++.++
T Consensus 14 ~~~~ILv~vD~~~s~~s~~al~~a~~la~---~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~l~ 82 (156)
T 3fg9_A 14 VYRRILLTVDEDDNTSSERAFRYATTLAH---DYDVPLGICSVLESEDINIFDSLTPSKIQA---K-----RKHVEDVVA 82 (156)
T ss_dssp CCC-EEEECCSCCCHHHHHHHHHHHHHHH---HHTCCEEEEEEECCCCTTCCCSSHHHHHHH---H-----HHHHHHHHH
T ss_pred cCceEEEEECCCCCHHHHHHHHHHHHHHH---hcCCEEEEEEEEeCCCccccccCCHHHHHH---H-----HHHHHHHHH
Confidence 4468999999 99999999999999994 467889999999865321100000000000 0 022344555
Q ss_pred HHHHhhhccce-EEEEeEEecCCCChHHHHHHH-HHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceE
Q 004461 484 AFEAFQQLSRV-SVRPMTAISSMSDMHEDICTT-AESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVG 561 (752)
Q Consensus 484 ~~~~~~~~~~v-~v~~~~~v~~~~~~~~~I~~~-A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~ 561 (752)
.+.+..++.++ .+++.+..+ +++.+.|+++ |++.++||||||+||+++++ .+ +||++++|++++||||.
T Consensus 83 ~~~~~~~~~g~~~~~~~v~~~--g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~------~Gs~~~~vl~~a~~PVl 153 (156)
T 3fg9_A 83 EYVQLAEQRGVNQVEPLVYEG--GDVDDVILEQVIPEFKPDLLVTGADTEFPHS-KI------AGAIGPRLARKAPISVI 153 (156)
T ss_dssp HHHHHHHHHTCSSEEEEEEEC--SCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-SS------CSCHHHHHHHHCSSEEE
T ss_pred HHHHHHHHcCCCceEEEEEeC--CCHHHHHHHHHHHhcCCCEEEECCCCCCccc-ee------ecchHHHHHHhCCCCEE
Confidence 55544445667 477777772 3999999999 99999999999999998886 46 99999999999999987
Q ss_pred EE
Q 004461 562 IL 563 (752)
Q Consensus 562 Il 563 (752)
|+
T Consensus 154 vV 155 (156)
T 3fg9_A 154 VV 155 (156)
T ss_dssp EE
T ss_pred Ee
Confidence 64
No 17
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.51 E-value=4.1e-14 Score=137.27 Aligned_cols=145 Identities=12% Similarity=0.139 Sum_probs=93.1
Q ss_pred cceEEEEeecCC---------ChhHHHHHHHHhcCCCC-CCCceEEEEEeeeccCCchh-H----HHHhhhhcCCCCCCC
Q 004461 407 QFRILACFHSAR---------NIPSTINLLEALRGIQK-SEGLCVYALHLMELSERSSA-I----LMVHKARRNGLPFWN 471 (752)
Q Consensus 407 e~rILv~v~~s~---------~~~~~i~la~~la~~~~-~~~~~v~~Lhvvel~~~~~~-~----~~~~~~~~~~~~~~~ 471 (752)
..|||+|+|+++ .+..+++.+..++.. . ..+.+++++|+++....... . .............
T Consensus 5 ~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~-~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 81 (175)
T 2gm3_A 5 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVR-SNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSN-- 81 (175)
T ss_dssp CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTT-TCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSH--
T ss_pred ccEEEEEECCCcccccccccHHHHHHHHHHHHHhhc-ccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHH--
Confidence 368999999999 999999999997632 1 25789999999864321000 0 0000000000000
Q ss_pred CCCCCCcchHHHHHHHhhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHH
Q 004461 472 RGRQSNPNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQR 551 (752)
Q Consensus 472 ~~~~~~~~~i~~~~~~~~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~ 551 (752)
.+..++.++.+.+..+..+++++..+..+ ++.+.|+++|++.++||||||+||++++.+.+ +||++++
T Consensus 82 ---~~~~~~~l~~~~~~~~~~g~~~~~~v~~G---~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~------~Gsva~~ 149 (175)
T 2gm3_A 82 ---KAKGLHLLEFFVNKCHEIGVGCEAWIKTG---DPKDVICQEVKRVRPDFLVVGSRGLGRFQKVF------VGTVSAF 149 (175)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTCEEEEEEEES---CHHHHHHHHHHHHCCSEEEEEECCCC--------------CHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHCCCceEEEEecC---CHHHHHHHHHHHhCCCEEEEeCCCCChhhhhh------cCchHHH
Confidence 01123344444444444678887777665 89999999999999999999999999888888 9999999
Q ss_pred HhhcCCCceEEEecC
Q 004461 552 VLKHAPCSVGILIDR 566 (752)
Q Consensus 552 Vl~~ApC~V~Ilv~r 566 (752)
|++++||||.|+...
T Consensus 150 vl~~a~~pVlvv~~~ 164 (175)
T 2gm3_A 150 CVKHAECPVMTIKRN 164 (175)
T ss_dssp HHHHCSSCEEEEECC
T ss_pred HHhCCCCCEEEEcCC
Confidence 999999999876544
No 18
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.48 E-value=2.9e-14 Score=132.41 Aligned_cols=134 Identities=10% Similarity=0.063 Sum_probs=98.4
Q ss_pred ceEEEEeecCCChhHHHHHHHHhc-CCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCC-CCcchHHHHH
Q 004461 408 FRILACFHSARNIPSTINLLEALR-GIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQ-SNPNHIVVAF 485 (752)
Q Consensus 408 ~rILv~v~~s~~~~~~i~la~~la-~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~ 485 (752)
.|||+|+|+++++..+++.+..++ .. .+.+++++|+++.+.............. ... . +..++.++.+
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~---~~a~l~ll~v~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~l~~~ 71 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKD---ADCTLTLIHVKPEFMLYGEAVLAAYDEI--EMK-----EEEKAKLLTQKF 71 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTC---TTEEEEEEEEECCCCCCHHHHHHHHHHH--HHH-----HHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccC---CCCEEEEEEEecCCCcccccccCcHHHH--HHH-----HHHHHHHHHHHH
Confidence 489999999999999999999999 55 6789999999987653322111100000 000 0 1134455555
Q ss_pred HHhhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEE
Q 004461 486 EAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 563 (752)
Q Consensus 486 ~~~~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Il 563 (752)
.+..++.+++++..+..+ ++++.|+++|+ ++||||||+||++++++. +||++++|++++||||.|+
T Consensus 72 ~~~~~~~g~~~~~~v~~g---~~~~~I~~~a~--~~dliV~G~~~~~~~~~~-------~Gs~~~~vl~~~~~pVlvv 137 (138)
T 3idf_A 72 STFFTEKGINPFVVIKEG---EPVEMVLEEAK--DYNLLIIGSSENSFLNKI-------FASHQDDFIQKAPIPVLIV 137 (138)
T ss_dssp HHHHHTTTCCCEEEEEES---CHHHHHHHHHT--TCSEEEEECCTTSTTSSC-------CCCTTCHHHHHCSSCEEEE
T ss_pred HHHHHHCCCCeEEEEecC---ChHHHHHHHHh--cCCEEEEeCCCcchHHHH-------hCcHHHHHHhcCCCCEEEe
Confidence 555555778888877776 89999999999 999999999998776543 4899999999999998764
No 19
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.48 E-value=7.9e-14 Score=129.96 Aligned_cols=135 Identities=9% Similarity=0.091 Sum_probs=94.3
Q ss_pred ceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeec-cCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHHHH
Q 004461 408 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMEL-SERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFE 486 (752)
Q Consensus 408 ~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 486 (752)
.|||+|+|+++.+..+++.+..++. ..+.+++++|+++. +............... . +..++..+.++
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~---~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~l~ 70 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAK---RHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQ-D--------RISTETQKALL 70 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHH---HHTCEEEEEEEEECCGGGCCCCEEHHHHHHT-T--------CCCCHHHHHHH
T ss_pred ceEEEEecCchhhHHHHHHHHHHHH---hcCCEEEEEEEecCchhhhccccccchHHHH-H--------HHHHHHHHHHH
Confidence 4899999999999999999999994 46788999999843 2211110000000000 0 22344555566
Q ss_pred HhhhccceEE-EEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEec
Q 004461 487 AFQQLSRVSV-RPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILID 565 (752)
Q Consensus 487 ~~~~~~~v~v-~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv~ 565 (752)
++.++.++.+ +..+..+ ++.+.|+++|++.++||||||+| ++++++ +||++++|++++||||.|+..
T Consensus 71 ~~~~~~~~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~-~~~~~~--------lgs~~~~vl~~~~~pVlvv~~ 138 (141)
T 1jmv_A 71 DLAESVDYPISEKLSGSG---DLGQVLSDAIEQYDVDLLVTGHH-QDFWSK--------LMSSTRQVMNTIKIDMLVVPL 138 (141)
T ss_dssp HHHHHSSSCCCCEEEEEE---CHHHHHHHHHHHTTCCEEEEEEC-CCCHHH--------HHHHHHHHHTTCCSEEEEEEC
T ss_pred HHHHHcCCCceEEEEecC---CHHHHHHHHHHhcCCCEEEEeCC-Cchhhh--------hcchHHHHHhcCCCCEEEeeC
Confidence 6655545554 3444444 89999999999999999999999 654321 689999999999999987654
Q ss_pred C
Q 004461 566 R 566 (752)
Q Consensus 566 r 566 (752)
+
T Consensus 139 ~ 139 (141)
T 1jmv_A 139 R 139 (141)
T ss_dssp C
T ss_pred C
Confidence 3
No 20
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.32 E-value=1.5e-12 Score=137.02 Aligned_cols=137 Identities=18% Similarity=0.058 Sum_probs=97.5
Q ss_pred CcceEEEEeecCCC-------hhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCc
Q 004461 406 AQFRILACFHSARN-------IPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNP 478 (752)
Q Consensus 406 ~e~rILv~v~~s~~-------~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (752)
...|||+|+|+++. +..+++.+..++. ..+.+++++|+++.+...... +.. ...+ +..
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~---~~~a~l~ll~v~~~~~~~~~~--~~~------~~~~----~~~ 197 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAG---LAKATLHVISAHPSPMLSSAD--PTF------QLSE----TIE 197 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHH---HTTCEEEEEEEEC-----------CH------HHHH----HHH
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHH---HcCCeEEEEEEecCccccccC--chh------HHHH----HHH
Confidence 45799999999999 8999999999994 467899999999764321110 000 0000 111
Q ss_pred chHHHHHHHhhhccceE-EEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCC
Q 004461 479 NHIVVAFEAFQQLSRVS-VRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAP 557 (752)
Q Consensus 479 ~~i~~~~~~~~~~~~v~-v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~Ap 557 (752)
++..+.++++.++.++. ++..+..+ ++.+.|+++|++.++||||||.||++++.+.+ +||++++|++++|
T Consensus 198 ~~~~~~l~~~~~~~g~~~~~~~v~~g---~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~------~Gsv~~~vl~~~~ 268 (290)
T 3mt0_A 198 ARYREACRTFQAEYGFSDEQLHIEEG---PADVLIPRTAQKLDAVVTVIGTVARTGLSGAL------IGNTAEVVLDTLE 268 (290)
T ss_dssp HHHHHHHHHHHHHHTCCTTTEEEEES---CHHHHHHHHHHHHTCSEEEEECCSSCCGGGCC------SCHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHcCCCcceEEEecc---CHHHHHHHHHHhcCCCEEEECCCCCcCCccee------cchHHHHHHhcCC
Confidence 23334444554444442 33444444 89999999999999999999999999998888 9999999999999
Q ss_pred CceEEEecC
Q 004461 558 CSVGILIDR 566 (752)
Q Consensus 558 C~V~Ilv~r 566 (752)
|||.|+..+
T Consensus 269 ~pVLvv~~~ 277 (290)
T 3mt0_A 269 SDVLVLKPD 277 (290)
T ss_dssp SEEEEECCH
T ss_pred CCEEEECCC
Confidence 999876544
No 21
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.30 E-value=5.2e-12 Score=117.07 Aligned_cols=131 Identities=8% Similarity=-0.013 Sum_probs=85.8
Q ss_pred cceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEee-ec-cCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHH
Q 004461 407 QFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLM-EL-SERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVA 484 (752)
Q Consensus 407 e~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvv-el-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 484 (752)
-.|||+|+|+++.+..+++.+..++ +..+.+++++|++ +. +.. +... .... .......++. .+..++.++.
T Consensus 4 ~~~ILv~~D~s~~s~~al~~a~~la---~~~~a~l~ll~v~~~~~~~~-~~~~-~~~~-~~~~~~~~~~-~~~~~~~l~~ 76 (138)
T 1q77_A 4 MKVLLVLTDAYSDCEKAITYAVNFS---EKLGAELDILAVLEDVYNLE-RANV-TFGL-PFPPEIKEES-KKRIERRLRE 76 (138)
T ss_dssp CEEEEEEESTTCCCHHHHHHHHHHH---TTTCCEEEEEEECHHHHHHH-HHHH-HHCC-CCCTHHHHHH-HHHHHHHHHH
T ss_pred ccEEEEEccCCHhHHHHHHHHHHHH---HHcCCeEEEEEEeccccccc-cccc-ccCC-CCChHHHHHH-HHHHHHHHHH
Confidence 3589999999999999999999999 4478899999998 63 110 0000 0000 0000000000 0112333333
Q ss_pred HHHh-hhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEE
Q 004461 485 FEAF-QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 563 (752)
Q Consensus 485 ~~~~-~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Il 563 (752)
++.+ ....+ +++..+..+ ++.+.|+++|++.++||||||+||+ |++++|++++||||.|+
T Consensus 77 ~~~~~~~~~~-~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~g~---------------sv~~~vl~~a~~PVlvv 137 (138)
T 1q77_A 77 VWEKLTGSTE-IPGVEYRIG---PLSEEVKKFVEGKGYELVVWACYPS---------------AYLCKVIDGLNLASLIV 137 (138)
T ss_dssp HHHHHHSCCC-CCCEEEECS---CHHHHHHHHHTTSCCSEEEECSCCG---------------GGTHHHHHHSSSEEEEC
T ss_pred HHHHhhccCC-cceEEEEcC---CHHHHHHHHHHhcCCCEEEEeCCCC---------------chHHHHHHhCCCceEee
Confidence 3221 22344 566655544 8999999999999999999999965 67899999999998653
No 22
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.23 E-value=2.9e-12 Score=136.50 Aligned_cols=144 Identities=14% Similarity=0.113 Sum_probs=99.6
Q ss_pred CcceEEEEeecCCC-------hhHHHHHHHHhcCCCCCC--CceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCC
Q 004461 406 AQFRILACFHSARN-------IPSTINLLEALRGIQKSE--GLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQS 476 (752)
Q Consensus 406 ~e~rILv~v~~s~~-------~~~~i~la~~la~~~~~~--~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (752)
...|||+|+|+++. +..+++.+..++.. . +.+++++|+.+..........+.. ......+ +
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~---~~~~a~l~ll~v~~~~~~~~~~~~~~~---~~~~~~~----~ 224 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHR---IQKDPDVHLLSAYPVAPINIAIELPDF---DPNLYNN----A 224 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHH---HCSSCCEEEEEEECCCSCSCCTTCTTC---CHHHHHH----H
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHh---ccCCCeEEEEEeecCcchhhhccCCcc---cHHHHHH----H
Confidence 35789999999994 58899999999843 4 678899999976543210000000 0000000 1
Q ss_pred CcchHHHHHHHhhhccce-EEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhc
Q 004461 477 NPNHIVVAFEAFQQLSRV-SVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKH 555 (752)
Q Consensus 477 ~~~~i~~~~~~~~~~~~v-~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ 555 (752)
..++..+.++++.++.++ .++..+..+ ++.+.|+++|++.++||||||.||++++.+.+ +||++++|+++
T Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~v~~g---~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~------~Gsv~~~vl~~ 295 (319)
T 3olq_A 225 LRGQHLIAMKELRQKFSIPEEKTHVKEG---LPEQVIPQVCEELNAGIVVLGILGRTGLSAAF------LGNTAEQLIDH 295 (319)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEES---CHHHHHHHHHHHTTEEEEEEECCSCCSTHHHH------HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEecC---CcHHHHHHHHHHhCCCEEEEeccCccCCcccc------ccHHHHHHHhh
Confidence 122334445555544333 233334444 89999999999999999999999999988888 99999999999
Q ss_pred CCCceEEEecCCC
Q 004461 556 APCSVGILIDRGL 568 (752)
Q Consensus 556 ApC~V~Ilv~rg~ 568 (752)
+||||.|+..+|+
T Consensus 296 ~~~pVLvv~~~~~ 308 (319)
T 3olq_A 296 IKCDLLAIKPDGF 308 (319)
T ss_dssp CCSEEEEECCTTC
T ss_pred CCCCEEEECCCCC
Confidence 9999988776654
No 23
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.18 E-value=3.3e-11 Score=126.91 Aligned_cols=122 Identities=12% Similarity=0.116 Sum_probs=98.8
Q ss_pred CCcceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHH
Q 004461 405 KAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVA 484 (752)
Q Consensus 405 ~~e~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 484 (752)
....|||+|+|+++.+..+++.+..++. ..+.+++++|+.+... .++.++.
T Consensus 168 ~~~~~Ilv~~d~s~~s~~al~~a~~la~---~~~~~l~ll~v~~~~~--------------------------~~~~l~~ 218 (294)
T 3loq_A 168 SLFDRVLVAYDFSKWADRALEYAKFVVK---KTGGELHIIHVSEDGD--------------------------KTADLRV 218 (294)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHHHH---HHTCEEEEEEECSSSC--------------------------CHHHHHH
T ss_pred ccCCEEEEEECCCHHHHHHHHHHHHHhh---hcCCEEEEEEEccCch--------------------------HHHHHHH
Confidence 3457999999999999999999999994 4678899999986432 1233444
Q ss_pred HHHhhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEe
Q 004461 485 FEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILI 564 (752)
Q Consensus 485 ~~~~~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv 564 (752)
+.++.++.+++++..+..+ ++.+.|+++|++.++||||||.||++++.+.+ +||++++|++++||||.|+.
T Consensus 219 ~~~~l~~~~~~~~~~~~~g---~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pvLvv~ 289 (294)
T 3loq_A 219 MEEVIGAEGIEVHVHIESG---TPHKAILAKREEINATTIFMGSRGAGSVMTMI------LGSTSESVIRRSPVPVFVCK 289 (294)
T ss_dssp HHHHHHHTTCCEEEEEECS---CHHHHHHHHHHHTTCSEEEEECCCCSCHHHHH------HHCHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHcCCcEEEEEecC---CHHHHHHHHHHhcCcCEEEEeCCCCCCcccee------eCcHHHHHHhcCCCCEEEEC
Confidence 4444444567777766544 99999999999999999999999999888877 99999999999999997654
No 24
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.09 E-value=1.8e-10 Score=122.10 Aligned_cols=133 Identities=14% Similarity=0.135 Sum_probs=94.1
Q ss_pred cceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcch-HHHHH
Q 004461 407 QFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNH-IVVAF 485 (752)
Q Consensus 407 e~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~ 485 (752)
..+||+|+|+++.+..+++.+..++. ..+.+++++|+.+..... .. ......+ . .+..++ +.+.+
T Consensus 171 ~~~Ilv~~D~s~~s~~al~~a~~la~---~~~a~l~ll~v~~~~~~~-~~--------~~~~~~~-~-~~~~~~~l~~~~ 236 (309)
T 3cis_A 171 QAPVLVGVDGSSASELATAIAFDEAS---RRNVDLVALHAWSDVDVS-EW--------PGIDWPA-T-QSMAEQVLAERL 236 (309)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHHH---HTTCCEEEEEESCSSCCT-TC--------SSCCHHH-H-HHHHHHHHHHHH
T ss_pred CCeEEEEeCCChHHHHHHHHHHHHHH---hcCCEEEEEEEeeccccc-CC--------CcccHHH-H-HHHHHHHHHHHH
Confidence 45899999999999999999999994 366788999998753211 00 0000000 0 000111 11222
Q ss_pred HHhhhc-cceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEe
Q 004461 486 EAFQQL-SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILI 564 (752)
Q Consensus 486 ~~~~~~-~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv 564 (752)
+.+.+. .++.++..+..+ ++.+.|+++|+ ++||||||.||++++.+.+ +||++++|++++||||.|+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~g---~~~~~I~~~a~--~adliV~G~~~~~~~~~~l------~Gsv~~~vl~~~~~pVlvv~ 305 (309)
T 3cis_A 237 AGWQERYPNVAITRVVVRD---QPARQLVQRSE--EAQLVVVGSRGRGGYAGML------VGSVGETVAQLARTPVIVAR 305 (309)
T ss_dssp TTHHHHCTTSCEEEEEESS---CHHHHHHHHHT--TCSEEEEESSCSSCCTTCS------SCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHhhCCCCcEEEEEEcC---CHHHHHHHhhC--CCCEEEECCCCCCCccccc------cCcHHHHHHhcCCCCEEEeC
Confidence 222222 467777766654 89999999997 9999999999999998888 99999999999999997653
No 25
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.08 E-value=2e-10 Score=107.22 Aligned_cols=136 Identities=10% Similarity=0.106 Sum_probs=91.8
Q ss_pred cceEEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeecccccCCcc--cc--CCcCccccHHHHHHHHHhhcCCCC-
Q 004461 579 VSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTV--SV--DMAGNASMDEEVLSEFKLKTSRNG- 653 (752)
Q Consensus 579 ~~~~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~~--~~--~~~~~~~~d~~~l~e~~~~~~~~~- 653 (752)
.+++|+++++|+++++.|+++|.++|+..+++++++++.++........ .. ..+..++..++.++++.......+
T Consensus 4 ~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 83 (146)
T 3s3t_A 4 RYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVATTSA 83 (146)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred ccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4689999999999999999999999999999999999997643220000 00 001122333466666666543322
Q ss_pred -CeEEEEEEecChHHHHHH-HHhccCCCEEEEccCCCccccccccCCCCCCccccchhhhccCCCCceeEEEEE
Q 004461 654 -SVRYEERLVRNTAETIAV-IREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQ 725 (752)
Q Consensus 654 -~v~~~e~~v~~g~~~~~~-i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvvq 725 (752)
.+.. +...++..+.+.. ..+..++||||||+|+ ..++.+| .+|++.+.++..-- +|||||.
T Consensus 84 ~~~~~-~~~~g~~~~~I~~~~a~~~~~dliV~G~~~----~~~~~~~----~~Gs~~~~vl~~~~--~pVlvV~ 146 (146)
T 3s3t_A 84 PNLKT-EISYGIPKHTIEDYAKQHPEIDLIVLGATG----TNSPHRV----AVGSTTSYVVDHAP--CNVIVIR 146 (146)
T ss_dssp CCCEE-EEEEECHHHHHHHHHHHSTTCCEEEEESCC----SSCTTTC----SSCHHHHHHHHHCS--SEEEEEC
T ss_pred cceEE-EEecCChHHHHHHHHHhhcCCCEEEECCCC----CCCcceE----EEcchHHHHhccCC--CCEEEeC
Confidence 2322 3334555554444 3333349999999999 6677776 68999999998432 7999984
No 26
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.01 E-value=3.9e-10 Score=106.93 Aligned_cols=130 Identities=15% Similarity=0.092 Sum_probs=89.6
Q ss_pred CcceEEEEEccC-CcchHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhcCCC-CCe
Q 004461 578 NVSYTITVLFFG-GRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRN-GSV 655 (752)
Q Consensus 578 ~~~~~I~v~~~g-g~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~~~~-~~v 655 (752)
-.+++|+++++| ++.++.|+++|.++|+..+++++++++.++.... .+..++..++.++++....... ..+
T Consensus 22 mm~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~g~~~ 94 (155)
T 3dlo_A 22 MIYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRT-------KDEDIIEAKETLSWAVSIIRKEGAEG 94 (155)
T ss_dssp CCCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTS-------CHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred cccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcc-------cHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 356899999999 9999999999999999999999999998753321 1122233345555555443221 222
Q ss_pred EEEEEEe--cChHHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccccchhhhccCCCCceeEEEEE
Q 004461 656 RYEERLV--RNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQ 725 (752)
Q Consensus 656 ~~~e~~v--~~g~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvvq 725 (752)
.. +..+ ++..+.+....+..++||||||+|+ ..++.++ .+|++.+.++..-- +|||||+
T Consensus 95 ~~-~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g----~~~~~~~----~lGSv~~~vl~~a~--~PVLvVr 155 (155)
T 3dlo_A 95 EE-HLLVRGKEPPDDIVDFADEVDAIAIVIGIRK----RSPTGKL----IFGSVARDVILKAN--KPVICIK 155 (155)
T ss_dssp EE-EEEESSSCHHHHHHHHHHHTTCSEEEEECCE----ECTTSCE----ECCHHHHHHHHHCS--SCEEEEC
T ss_pred eE-EEEecCCCHHHHHHHHHHHcCCCEEEECCCC----CCCCCCE----EeccHHHHHHHhCC--CCEEEeC
Confidence 22 2223 5555544444333359999999999 6677765 68999999998422 7999984
No 27
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.01 E-value=4.7e-10 Score=104.78 Aligned_cols=134 Identities=16% Similarity=0.195 Sum_probs=89.4
Q ss_pred ceEEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeeccc-cc-CC---c-cccC--CcCccccHHHHHHHHHhhcCC
Q 004461 580 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAAD-AI-GN---T-VSVD--MAGNASMDEEVLSEFKLKTSR 651 (752)
Q Consensus 580 ~~~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~-~~-~~---~-~~~~--~~~~~~~d~~~l~e~~~~~~~ 651 (752)
+++|+++++|++.++.|+++|.++|++.+++++++++.++.. .. .. . ...+ .+..++..++.++++......
T Consensus 2 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (147)
T 3hgm_A 2 FNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATE 81 (147)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999999999999999999999999997543 10 00 0 0000 111123334556665544321
Q ss_pred CC-Ce---EEEEEEecChHHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccccchhhhccCCCCceeEEEE
Q 004461 652 NG-SV---RYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLII 724 (752)
Q Consensus 652 ~~-~v---~~~e~~v~~g~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvv 724 (752)
.+ .+ . .+...++..+.+....+..++||||||+|+ ..++.+| .+|++.+.++..-- +|||||
T Consensus 82 ~g~~~~~~~-~~~~~g~~~~~I~~~a~~~~~dliV~G~~~----~~~~~~~----~~Gs~~~~vl~~~~--~pVlvV 147 (147)
T 3hgm_A 82 LGVPADKVR-AFVKGGRPSRTIVRFARKRECDLVVIGAQG----TNGDKSL----LLGSVAQRVAGSAH--CPVLVV 147 (147)
T ss_dssp TTCCGGGEE-EEEEESCHHHHHHHHHHHTTCSEEEECSSC----TTCCSCC----CCCHHHHHHHHHCS--SCEEEC
T ss_pred cCCCccceE-EEEecCCHHHHHHHHHHHhCCCEEEEeCCC----Cccccce----eeccHHHHHHhhCC--CCEEEC
Confidence 11 12 3 334456666655444443359999999999 7777776 78999999998432 799986
No 28
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=98.99 E-value=1.4e-09 Score=103.56 Aligned_cols=137 Identities=15% Similarity=0.080 Sum_probs=89.9
Q ss_pred cceEEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeecc-----cc-cCC-cc--c-cCC--------cCccccHHH
Q 004461 579 VSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAA-----DA-IGN-TV--S-VDM--------AGNASMDEE 640 (752)
Q Consensus 579 ~~~~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~-----~~-~~~-~~--~-~~~--------~~~~~~d~~ 640 (752)
.+++|+++++|+++++.|+++|.++|+..+++++++++.++. .. ... .. . ..+ +..++..++
T Consensus 4 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (162)
T 1mjh_A 4 MYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN 83 (162)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHH
Confidence 367999999999999999999999999999999999999754 11 100 00 0 000 001122345
Q ss_pred HHHHHHhhcCCCC-CeEEEEEEecChHHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccccchhhhccCCCCce
Q 004461 641 VLSEFKLKTSRNG-SVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTA 719 (752)
Q Consensus 641 ~l~e~~~~~~~~~-~v~~~e~~v~~g~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~ 719 (752)
.++++.......+ .+.. +...++..+.+....+..++||||||+|+ ..++.+| .+|++.+.++..-- +
T Consensus 84 ~l~~~~~~~~~~g~~~~~-~v~~G~~~~~I~~~a~~~~~dlIV~G~~g----~~~~~~~----~~GSv~~~vl~~~~--~ 152 (162)
T 1mjh_A 84 KMENIKKELEDVGFKVKD-IIVVGIPHEEIVKIAEDEGVDIIIMGSHG----KTNLKEI----LLGSVTENVIKKSN--K 152 (162)
T ss_dssp HHHHHHHHHHHTTCEEEE-EEEEECHHHHHHHHHHHTTCSEEEEESCC----SSCCTTC----SSCHHHHHHHHHCC--S
T ss_pred HHHHHHHHHHHcCCceEE-EEcCCCHHHHHHHHHHHcCCCEEEEcCCC----CCCccce----EecchHHHHHHhCC--C
Confidence 5666655432222 2222 23345665555444433359999999999 6777776 79999999998432 7
Q ss_pred eEEEEEe
Q 004461 720 SVLIIQQ 726 (752)
Q Consensus 720 svLvvqq 726 (752)
|||||..
T Consensus 153 pVlvv~~ 159 (162)
T 1mjh_A 153 PVLVVKR 159 (162)
T ss_dssp CEEEECC
T ss_pred CEEEEeC
Confidence 9999964
No 29
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.99 E-value=1.5e-09 Score=100.24 Aligned_cols=131 Identities=12% Similarity=0.026 Sum_probs=88.1
Q ss_pred ceEEEEEccCCcchHHHHHHHHHHh-hCCCeEEEEEEEeecccccCCcc---ccCCcCcc-ccHHHHHHHHHhhcCCCC-
Q 004461 580 SYTITVLFFGGRDDREALACGARMA-EHPGISFIVIRFLLAADAIGNTV---SVDMAGNA-SMDEEVLSEFKLKTSRNG- 653 (752)
Q Consensus 580 ~~~I~v~~~gg~ddreAL~~a~~ma-~~~~~~ltvl~v~~~~~~~~~~~---~~~~~~~~-~~d~~~l~e~~~~~~~~~- 653 (752)
.++|+++++|++.++.|+++|.++| +..+++++++++.++........ ....+..+ +..++.++++.......+
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 80 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTEKGI 80 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3699999999999999999999999 99999999999997643210000 00001111 333455666655543222
Q ss_pred CeEEEEEEecChHHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccccchhhhccCCCCceeEEEE
Q 004461 654 SVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLII 724 (752)
Q Consensus 654 ~v~~~e~~v~~g~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvv 724 (752)
.+. .+...++..+.+....+ ++||||||+|+ ..++.+| . |++.+.++..-- +|||||
T Consensus 81 ~~~-~~v~~g~~~~~I~~~a~--~~dliV~G~~~----~~~~~~~----~-Gs~~~~vl~~~~--~pVlvv 137 (138)
T 3idf_A 81 NPF-VVIKEGEPVEMVLEEAK--DYNLLIIGSSE----NSFLNKI----F-ASHQDDFIQKAP--IPVLIV 137 (138)
T ss_dssp CCE-EEEEESCHHHHHHHHHT--TCSEEEEECCT----TSTTSSC----C-CCTTCHHHHHCS--SCEEEE
T ss_pred CeE-EEEecCChHHHHHHHHh--cCCEEEEeCCC----cchHHHH----h-CcHHHHHHhcCC--CCEEEe
Confidence 222 33344666665554444 69999999999 6677766 4 999999988432 799998
No 30
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=98.98 E-value=1.3e-09 Score=104.24 Aligned_cols=138 Identities=19% Similarity=0.210 Sum_probs=88.4
Q ss_pred CCcceEEEEEccCCcchHHHHHHHHHHhhCCCeEEEEE--EEeecccc-cC-Cc-cccCCcCccccHHHHHHHHHhhcCC
Q 004461 577 SNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVI--RFLLAADA-IG-NT-VSVDMAGNASMDEEVLSEFKLKTSR 651 (752)
Q Consensus 577 ~~~~~~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl--~v~~~~~~-~~-~~-~~~~~~~~~~~d~~~l~e~~~~~~~ 651 (752)
....++|+++++|++.++.|+++|.++|+ .+++++++ ++.++... .. .. ...-.+..++..++.++++......
T Consensus 14 ~~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 92 (163)
T 1tq8_A 14 LSAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHN 92 (163)
T ss_dssp CCCCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHT
T ss_pred cccCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999 99999999 88764322 10 00 0000112233445667766655432
Q ss_pred CC-C-eEEEEEEecChHHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccccchhhhccCCCCceeEEEEEe
Q 004461 652 NG-S-VRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQQ 726 (752)
Q Consensus 652 ~~-~-v~~~e~~v~~g~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvvqq 726 (752)
.+ . +.. +...++..+.+....+..++||||||+|+ ..++.+| .+|++.+.++..-- +|||||..
T Consensus 93 ~gv~~v~~-~v~~G~~~~~I~~~a~~~~~DLIV~G~~g----~~~~~~~----~lGSva~~vl~~a~--~PVlvV~~ 158 (163)
T 1tq8_A 93 AGAKNVEE-RPIVGAPVDALVNLADEEKADLLVVGNVG----LSTIAGR----LLGSVPANVSRRAK--VDVLIVHT 158 (163)
T ss_dssp TTCCEEEE-EEECSSHHHHHHHHHHHTTCSEEEEECCC----CCSHHHH----HTBBHHHHHHHHTT--CEEEEECC
T ss_pred cCCCeEEE-EEecCCHHHHHHHHHHhcCCCEEEECCCC----CCcccce----eeccHHHHHHHhCC--CCEEEEeC
Confidence 22 2 322 33345555544433333349999999999 6677766 68999999998432 79999974
No 31
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=98.93 E-value=1.7e-09 Score=103.81 Aligned_cols=139 Identities=12% Similarity=-0.032 Sum_probs=89.0
Q ss_pred cceEEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeecccccCCc---c-------ccCCc---CccccHHHHHHHH
Q 004461 579 VSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNT---V-------SVDMA---GNASMDEEVLSEF 645 (752)
Q Consensus 579 ~~~~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~---~-------~~~~~---~~~~~d~~~l~e~ 645 (752)
.+++|+++++|+++++.|+++|.++|+..+++|+++++.++....... . ....+ ..++..++.++++
T Consensus 4 m~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (170)
T 2dum_A 4 MFRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEK 83 (170)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHH
T ss_pred ccceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 367999999999999999999999999999999999998753321000 0 00001 1112233555555
Q ss_pred HhhcCC-CCCeEE-EEEEecChHHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccccchhhhccCCCCceeEEE
Q 004461 646 KLKTSR-NGSVRY-EERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLI 723 (752)
Q Consensus 646 ~~~~~~-~~~v~~-~e~~v~~g~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLv 723 (752)
...... +-.+.. .....++..+.+....+..++||||||+|+ ..++.++ .+|++.+.++..-- +||||
T Consensus 84 ~~~~~~~g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g----~~~~~~~----~~Gsv~~~vl~~~~--~PVlv 153 (170)
T 2dum_A 84 AEEVKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRG----KLSLSHE----FLGSTVMRVLRKTK--KPVLI 153 (170)
T ss_dssp HHHHHHHTTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCC----CCC--TT----CCCHHHHHHHHHCS--SCEEE
T ss_pred HHHHHHcCCceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCC----CCccccc----eechHHHHHHHhCC--CCEEE
Confidence 543211 122332 123345655554444333359999999999 6677666 68999999998422 79999
Q ss_pred EEee
Q 004461 724 IQQY 727 (752)
Q Consensus 724 vqq~ 727 (752)
|...
T Consensus 154 v~~~ 157 (170)
T 2dum_A 154 IKEV 157 (170)
T ss_dssp ECCC
T ss_pred EccC
Confidence 9754
No 32
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=98.92 E-value=2.3e-09 Score=99.53 Aligned_cols=132 Identities=13% Similarity=0.101 Sum_probs=83.4
Q ss_pred eEEEEEccCCcc--hHHHHHHHHHHhhCCCeEEEEEEEeecccccCCc--ccc-CCcCccccHH---HHHHHHHhhcCCC
Q 004461 581 YTITVLFFGGRD--DREALACGARMAEHPGISFIVIRFLLAADAIGNT--VSV-DMAGNASMDE---EVLSEFKLKTSRN 652 (752)
Q Consensus 581 ~~I~v~~~gg~d--dreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~--~~~-~~~~~~~~d~---~~l~e~~~~~~~~ 652 (752)
++|+++++|+++ ++.|+++|.++|+..+++++++++.++....... ... ..+..++..+ +.++++..+....
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIP 81 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCCC
Confidence 699999999999 9999999999999999999999999763311000 000 0011112222 3334444333211
Q ss_pred C-CeEEEEEEecChHHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccccchhhhccCCCCceeEEEE
Q 004461 653 G-SVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLII 724 (752)
Q Consensus 653 ~-~v~~~e~~v~~g~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvv 724 (752)
+ .+. .....++..+.+....+..++||||||+|+ .|+.+| .+|++.+.++..-- +|||||
T Consensus 82 ~~~v~-~~~~~g~~~~~I~~~a~~~~~dliV~G~~~-----~~~~~~----~~Gs~~~~v~~~~~--~pVlvv 142 (143)
T 3fdx_A 82 EDRMH-FHVAEGSPKDKILALAKSLPADLVIIASHR-----PDITTY----LLGSNAAAVVRHAE--CSVLVV 142 (143)
T ss_dssp GGGEE-EEEEESCHHHHHHHHHHHTTCSEEEEESSC-----TTCCSC----SSCHHHHHHHHHCS--SEEEEE
T ss_pred CCceE-EEEEecChHHHHHHHHHHhCCCEEEEeCCC-----CCCeee----eeccHHHHHHHhCC--CCEEEe
Confidence 1 222 233456666655554443359999999997 355555 68999999998432 799998
No 33
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=98.92 E-value=2.4e-09 Score=98.81 Aligned_cols=134 Identities=20% Similarity=0.158 Sum_probs=87.1
Q ss_pred ceEEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccC--CcCccccHHHHHHHHHhhcCCCCCeEE
Q 004461 580 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVD--MAGNASMDEEVLSEFKLKTSRNGSVRY 657 (752)
Q Consensus 580 ~~~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~~~~~--~~~~~~~d~~~l~e~~~~~~~~~~v~~ 657 (752)
+++|+++++|+++++.|+++|.++|+..+++++++++.++..........+ .+..++..++.++++..+. +-..+.+
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~ 80 (137)
T 2z08_A 2 FKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALT-GVPKEDA 80 (137)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHHH-CCCGGGE
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHHc-CCCccEE
Confidence 469999999999999999999999999999999999987432110000000 0111223346666665541 1102222
Q ss_pred EEEEecChHHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccccchhhhccCCCCceeEEEEE
Q 004461 658 EERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQ 725 (752)
Q Consensus 658 ~e~~v~~g~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvvq 725 (752)
. ...++..+.+....+..++||||||+|+ ..++.++ .+|++.+.++..-- .|||||.
T Consensus 81 ~-~~~g~~~~~I~~~a~~~~~dliV~G~~~----~~~~~~~----~~Gs~~~~vl~~~~--~pVlvv~ 137 (137)
T 2z08_A 81 L-LLEGVPAEAILQAARAEKADLIVMGTRG----LGALGSL----FLGSQSQRVVAEAP--CPVLLVR 137 (137)
T ss_dssp E-EEESSHHHHHHHHHHHTTCSEEEEESSC----TTCCSCS----SSCHHHHHHHHHCS--SCEEEEC
T ss_pred E-EEecCHHHHHHHHHHHcCCCEEEECCCC----Cchhhhh----hhccHHHHHHhcCC--CCEEEeC
Confidence 2 2345665555444433359999999999 6677665 68999999998422 7999983
No 34
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=98.89 E-value=1.2e-09 Score=113.20 Aligned_cols=114 Identities=15% Similarity=0.153 Sum_probs=87.8
Q ss_pred cceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHHHH
Q 004461 407 QFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFE 486 (752)
Q Consensus 407 e~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 486 (752)
..|||+|+|+++.+..+++.+..++.. .+.+++++|+.+..+ + .++.++.+.
T Consensus 154 ~~~ilv~~d~s~~~~~al~~a~~la~~---~~a~l~ll~v~~~~~---------~----------------~~~~l~~~~ 205 (268)
T 3ab8_A 154 LEGALLGYDASESAVRALHALAPLARA---LGLGVRVVSVHEDPA---------R----------------AEAWALEAE 205 (268)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHHHHH---HTCCEEEEEECSSHH---------H----------------HHHHHHHHH
T ss_pred CCEEEEEECCCHHHHHHHHHHHHhhhc---CCCEEEEEEEcCcHH---------H----------------HHHHHHHHH
Confidence 358999999999999999999999843 566789999985321 0 122333344
Q ss_pred HhhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEE
Q 004461 487 AFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 563 (752)
Q Consensus 487 ~~~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Il 563 (752)
++.++.+++++..+.. +++.+.|+++|++. ||||||. ++.+.+ +||++++|++++||||.|+
T Consensus 206 ~~l~~~~~~~~~~~~~---g~~~~~i~~~a~~~--dliV~G~----~~~~~~------~Gs~~~~vl~~~~~pvlvv 267 (268)
T 3ab8_A 206 AYLRDHGVEASALVLG---GDAADHLLRLQGPG--DLLALGA----PVRRLV------FGSTAERVIRNAQGPVLTA 267 (268)
T ss_dssp HHHHHTTCCEEEEEEC---SCHHHHHHHHCCTT--EEEEEEC----CCSCCS------SCCHHHHHHHHCSSCEEEE
T ss_pred HHHHHcCCceEEEEeC---CChHHHHHHHHHhC--CEEEECC----cccccE------eccHHHHHHhcCCCCEEEe
Confidence 4444456777766654 48999999999999 9999998 566777 9999999999999998764
No 35
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=98.89 E-value=2.9e-09 Score=99.82 Aligned_cols=136 Identities=16% Similarity=0.103 Sum_probs=83.9
Q ss_pred cceEEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeeccccc---CCc--cccCC---cCccccHHHHHHHHHhhcC
Q 004461 579 VSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAI---GNT--VSVDM---AGNASMDEEVLSEFKLKTS 650 (752)
Q Consensus 579 ~~~~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~---~~~--~~~~~---~~~~~~d~~~l~e~~~~~~ 650 (752)
.+++|+++++|++.++.|+++|.++|+..+++++++++.++.... ... ....+ +..++..++.++++..+..
T Consensus 5 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 84 (150)
T 3tnj_A 5 VYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLG 84 (150)
T ss_dssp CCSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 367999999999999999999999999999999999998753220 000 00001 1112223456666655542
Q ss_pred CCCCeEEEEEEecChHHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccccchhhhccCCCCceeEEEEEee
Q 004461 651 RNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQQY 727 (752)
Q Consensus 651 ~~~~v~~~e~~v~~g~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvvqq~ 727 (752)
.. .+. .+...++..+.+....+..++||||||+|+ .+++. + .+|++.+.++..-- +|||||...
T Consensus 85 ~~-~~~-~~~~~g~~~~~I~~~a~~~~~dliV~G~~~----~~~~~-~----~~Gs~~~~vl~~~~--~pVlvv~~~ 148 (150)
T 3tnj_A 85 ID-PAH-RWLVWGEPREEIIRIAEQENVDLIVVGSHG----RHGLA-L----LLGSTANSVLHYAK--CDVLAVRLR 148 (150)
T ss_dssp CC-GGG-EEEEESCHHHHHHHHHHHTTCSEEEEEEC-----------------CCCHHHHHHHHCS--SEEEEEECC
T ss_pred CC-cce-EEEecCCHHHHHHHHHHHcCCCEEEEecCC----CCCcC-e----EecchHHHHHHhCC--CCEEEEeCC
Confidence 21 111 233346666655444443359999999998 66666 5 79999999998432 799999753
No 36
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.86 E-value=3.6e-09 Score=100.03 Aligned_cols=137 Identities=15% Similarity=0.152 Sum_probs=87.5
Q ss_pred CCcceEEEEEcc--CCcchHHHHHHHHHHhhCCCeEEEEEEEeecccccCCcccc--CCcCccccHHHHHHHHHhhcCCC
Q 004461 577 SNVSYTITVLFF--GGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSV--DMAGNASMDEEVLSEFKLKTSRN 652 (752)
Q Consensus 577 ~~~~~~I~v~~~--gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~~~~--~~~~~~~~d~~~l~e~~~~~~~~ 652 (752)
...+++|+++++ |+++++.|+++|.++|+..+++++++++.++.......... ..+..++..++.+++++......
T Consensus 12 ~~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 91 (156)
T 3fg9_A 12 PLVYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQR 91 (156)
T ss_dssp CCCCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345789999999 99999999999999999999999999999764321000000 00111223345555554443221
Q ss_pred C--CeEEEEEEe-cChHHHHHHH-HhccCCCEEEEccCCCccccccccCCCCCCccccchhhhccCCCCceeEEEEE
Q 004461 653 G--SVRYEERLV-RNTAETIAVI-REVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQ 725 (752)
Q Consensus 653 ~--~v~~~e~~v-~~g~~~~~~i-~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvvq 725 (752)
+ .+. ..... ++..+.+... .+..++||||||+|+ ..++. + .+|++.+.++..-- +|||||.
T Consensus 92 g~~~~~-~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g----~~~~~-~----~~Gs~~~~vl~~a~--~PVlvV~ 156 (156)
T 3fg9_A 92 GVNQVE-PLVYEGGDVDDVILEQVIPEFKPDLLVTGADT----EFPHS-K----IAGAIGPRLARKAP--ISVIVVR 156 (156)
T ss_dssp TCSSEE-EEEEECSCHHHHHHHTHHHHHCCSEEEEETTC----CCTTS-S----SCSCHHHHHHHHCS--SEEEEEC
T ss_pred CCCceE-EEEEeCCCHHHHHHHHHHHhcCCCEEEECCCC----CCccc-e----eecchHHHHHHhCC--CCEEEeC
Confidence 2 232 23333 5555544433 222349999999998 66664 3 59999999998432 7999983
No 37
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=98.77 E-value=3.2e-08 Score=95.36 Aligned_cols=138 Identities=11% Similarity=0.064 Sum_probs=79.8
Q ss_pred cceEEEEEccCCc---------chHHHHHHHHHHh-hC--CCeEEEEEEEeecccccCC---c---ccc--C--CcCccc
Q 004461 579 VSYTITVLFFGGR---------DDREALACGARMA-EH--PGISFIVIRFLLAADAIGN---T---VSV--D--MAGNAS 636 (752)
Q Consensus 579 ~~~~I~v~~~gg~---------ddreAL~~a~~ma-~~--~~~~ltvl~v~~~~~~~~~---~---~~~--~--~~~~~~ 636 (752)
..++|+++++|++ .++.|+++|.+++ +. .+++|+++++.++...... . ... + .+..++
T Consensus 4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (175)
T 2gm3_A 4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKA 83 (175)
T ss_dssp -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHH
T ss_pred CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHH
Confidence 4689999999999 9999999999986 54 6999999999854321100 0 000 0 011112
Q ss_pred cHHHHHHHHHhhcCC-CCCeEEEEEEecChHHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccccchhhhccCC
Q 004461 637 MDEEVLSEFKLKTSR-NGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLE 715 (752)
Q Consensus 637 ~d~~~l~e~~~~~~~-~~~v~~~e~~v~~g~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~ 715 (752)
..++.++++...... +-.+.+ +...++..+.+....+..++||||||+|+ ..++.+| .+|++.+.++..-
T Consensus 84 ~~~~~l~~~~~~~~~~g~~~~~-~v~~G~~~~~I~~~a~~~~~DLIVmG~~g----~~~~~~~----~~Gsva~~vl~~a 154 (175)
T 2gm3_A 84 KGLHLLEFFVNKCHEIGVGCEA-WIKTGDPKDVICQEVKRVRPDFLVVGSRG----LGRFQKV----FVGTVSAFCVKHA 154 (175)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEE-EEEESCHHHHHHHHHHHHCCSEEEEEECC----CC------------CHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCCceEE-EEecCCHHHHHHHHHHHhCCCEEEEeCCC----CChhhhh----hcCchHHHHHhCC
Confidence 234566665544321 112222 23345555544443333349999999999 7777776 6899999999843
Q ss_pred CCceeEEEEEee
Q 004461 716 FSTASVLIIQQY 727 (752)
Q Consensus 716 ~~~~svLvvqq~ 727 (752)
- ++||||...
T Consensus 155 ~--~pVlvv~~~ 164 (175)
T 2gm3_A 155 E--CPVMTIKRN 164 (175)
T ss_dssp S--SCEEEEECC
T ss_pred C--CCEEEEcCC
Confidence 2 799999754
No 38
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=98.67 E-value=8.1e-08 Score=88.78 Aligned_cols=132 Identities=11% Similarity=0.039 Sum_probs=84.9
Q ss_pred ceEEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeec-cc-ccCCcc-c--cCCcCccccHHHHHHHHHhhcCCCCC
Q 004461 580 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLA-AD-AIGNTV-S--VDMAGNASMDEEVLSEFKLKTSRNGS 654 (752)
Q Consensus 580 ~~~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~-~~-~~~~~~-~--~~~~~~~~~d~~~l~e~~~~~~~~~~ 654 (752)
+++|+++++|+++++.|+++|.++|+..+++++++++.++ .. ...... . ...+..++..++.++++..+... .
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~ 79 (141)
T 1jmv_A 2 YKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDY--P 79 (141)
T ss_dssp CSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHSSS--C
T ss_pred CceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHHHHcCC--C
Confidence 4699999999999999999999999999999999999843 11 110000 0 00111223345667777655421 1
Q ss_pred eEEEEEEecChHHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccccchhhhccCCCCceeEEEEEe
Q 004461 655 VRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQQ 726 (752)
Q Consensus 655 v~~~e~~v~~g~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~~svLvvqq 726 (752)
+.......++..+.+....+..++||||||+|+ + ++.+ +|++.+.++..-- .|||||..
T Consensus 80 ~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~-~----~~~~------lgs~~~~vl~~~~--~pVlvv~~ 138 (141)
T 1jmv_A 80 ISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHHQ-D----FWSK------LMSSTRQVMNTIK--IDMLVVPL 138 (141)
T ss_dssp CCCEEEEEECHHHHHHHHHHHTTCCEEEEEECC-C----CHHH------HHHHHHHHHTTCC--SEEEEEEC
T ss_pred ceEEEEecCCHHHHHHHHHHhcCCCEEEEeCCC-c----hhhh------hcchHHHHHhcCC--CCEEEeeC
Confidence 111223345665555444443449999999984 3 3332 6899999988422 79999974
No 39
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=98.61 E-value=6.1e-08 Score=89.31 Aligned_cols=107 Identities=15% Similarity=0.084 Sum_probs=65.2
Q ss_pred cceEEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEe-ec---cc-ccC-CccccC--CcCccccHHHHHHHHHhh--
Q 004461 579 VSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFL-LA---AD-AIG-NTVSVD--MAGNASMDEEVLSEFKLK-- 648 (752)
Q Consensus 579 ~~~~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~-~~---~~-~~~-~~~~~~--~~~~~~~d~~~l~e~~~~-- 648 (752)
.+++|+++++|++.++.|+++|.++|+..+++++++++. +. .. ... ...... .+..++..++.++++ .+
T Consensus 3 ~~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 81 (138)
T 1q77_A 3 AMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREV-WEKL 81 (138)
T ss_dssp CCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHH-HHHH
T ss_pred cccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHH-HHHh
Confidence 467999999999999999999999999999999999998 52 11 000 000000 001112234555665 43
Q ss_pred cCCCCCeEEEEEEecChHHHHHHHHhccCCCEEEEccCC
Q 004461 649 TSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMP 687 (752)
Q Consensus 649 ~~~~~~v~~~e~~v~~g~~~~~~i~~~~~~DLiivG~~~ 687 (752)
....+.+.+. ...++..+.+....+..++||||||+|+
T Consensus 82 ~~~~~~~~~~-~~~g~~~~~I~~~a~~~~~dliV~G~~g 119 (138)
T 1q77_A 82 TGSTEIPGVE-YRIGPLSEEVKKFVEGKGYELVVWACYP 119 (138)
T ss_dssp HSCCCCCCEE-EECSCHHHHHHHHHTTSCCSEEEECSCC
T ss_pred hccCCcceEE-EEcCCHHHHHHHHHHhcCCCEEEEeCCC
Confidence 1221133332 3345555544433333349999999998
No 40
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=98.04 E-value=0.0025 Score=67.56 Aligned_cols=234 Identities=15% Similarity=0.074 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHhhccChhhHHhcCch---hhHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHhhccH
Q 004461 96 LANLGLIFFMFLVGLELDPKSLRQTGKK---ALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAF 172 (752)
Q Consensus 96 l~~lgl~~llF~~Gle~d~~~l~~~~~~---~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~ 172 (752)
....++.+.||..|++++++++++..|+ .....+..+++-=+++++++..+.. +... ...+.+ ...+++..
T Consensus 44 ~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l----~~~~-~~Glil-~~~~P~~~ 117 (332)
T 3zux_A 44 YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNL----PAEI-AVGVIL-VGCCPGGT 117 (332)
T ss_dssp GHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTC----CHHH-HHHHHH-HHHSCCCT
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCC----ChHH-HHHHHH-HhcCCchh
Confidence 4456788899999999999999854433 2222333443222234444443321 1111 111111 22222221
Q ss_pred HHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004461 173 PVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQ 252 (752)
Q Consensus 173 ~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~~~ 252 (752)
.+.++..+ .+.+ ..++.+...++.+++.+.+-+...+..+.... ...+.+...++..++.-++.+.+.++...+
T Consensus 118 --~s~v~t~~--a~Gd-~~la~~~~~~stll~~~~~Pl~~~l~~g~~~~-v~~~~~~~~l~~~vllP~~lG~l~r~~~~~ 191 (332)
T 3zux_A 118 --ASNVMTYL--ARGN-VALSVAVTSVSTLTSPLLTPAIFLMLAGEMLE-IQAAGMLMSIVKMVLLPIVLGLIVHKVLGS 191 (332)
T ss_dssp --HHHHHHHH--TTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTHHHHHHHHHHHHHHGG
T ss_pred --HHHHHHHH--hCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223332 2344 36777888889999888877665544332111 122223333333333333333333332222
Q ss_pred cCCCchHHHHHHHHHHHHH-HhhHHHHHHHhhccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 004461 253 CHEGPFANALVEKVEDLVS-GIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALA 331 (752)
Q Consensus 253 ~~eg~~~~~l~~kl~~~~~-~~~~piFFv~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~ 331 (752)
. .+.....+..+.. .+++-++.+.. . +...+.. ..+ .+....++..+.-+..++..++.+|.+.+|+..
T Consensus 192 ~-----~~~~~~~l~~~s~~~illiv~~~~~-~--~~~~~~~-~~~-~v~~~~~l~~~~~~~lg~~~~r~~~~~~~~~~t 261 (332)
T 3zux_A 192 K-----TEKLTDALPLVSVAAIVLIIGAVVG-A--SKGKIME-SGL-LIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKA 261 (332)
T ss_dssp G-----GHHHHTTHHHHHHHHHHHHHHHHHH-H--THHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred H-----HHHHHHhhhHHHHHHHHHHhHHHHH-h--hhHHHHh-ccH-HHHHHHHHHHHHHHHHHHHHHHHhCCCHhHhhh
Confidence 1 1222222222211 12222222222 1 2222322 122 223334444556677788889999999999999
Q ss_pred HHHHhh-hhHHHHHHHHHhhh
Q 004461 332 LGILMN-TKGLVELIVLNIGK 351 (752)
Q Consensus 332 lgl~l~-~rG~v~l~l~~~~~ 351 (752)
+++..+ .+....+.++....
T Consensus 262 i~~e~G~qNs~lai~lA~~~F 282 (332)
T 3zux_A 262 LTIEVGMQNSGLAAALAAAHF 282 (332)
T ss_dssp HHHHHHCCCHHHHHHHHHHHS
T ss_pred hhhhhhhccHHHHHHHHHHHc
Confidence 888444 34556666665544
No 41
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=96.45 E-value=0.11 Score=52.65 Aligned_cols=218 Identities=13% Similarity=0.093 Sum_probs=139.3
Q ss_pred ceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCC-cchHHHHHH
Q 004461 408 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSN-PNHIVVAFE 486 (752)
Q Consensus 408 ~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~ 486 (752)
-.|||+...|..-..++.++..+... . ..+.+.++.....+ +. .++ ++.++
T Consensus 21 P~iLV~sg~p~~~~~li~la~~lt~~---~-G~ltv~~i~p~~~~-----------------------~~l~~q-l~~l~ 72 (294)
T 3g40_A 21 ANLLVPVEDPRELMGTFDFLRDITYP---K-GSVKLLGLAGNTDK-----------------------ENLLSQ-LPSIS 72 (294)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHTT---T-CEEEEEECC---CT-----------------------TCHHHH-HHHHH
T ss_pred CcEEEecCCchhhhhHHHHHHHhccC---c-eeEEEEEEccCCCc-----------------------cHHHHH-HHHHH
Confidence 47999999998899999999999954 3 34677777421110 11 223 37778
Q ss_pred HhhhccceEEEEeEEecCCCChHHHHHHHHHhc-----CccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceE
Q 004461 487 AFQQLSRVSVRPMTAISSMSDMHEDICTTAESK-----RAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVG 561 (752)
Q Consensus 487 ~~~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~-----~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~ 561 (752)
+|.++.++..-..+..+ .++.+++....+.. +.+-|+||+..+.. ....+..+..+.. ++...|.
T Consensus 73 ~~l~~r~v~a~~~vi~a--~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e-------~~~~y~~~i~~~~-~~~~nVl 142 (294)
T 3g40_A 73 EGFQEEGVFSSWTIIDT--AEFEENLVVGMEALTGSFFRPSILFLRLPENRD-------RDEEIREIIRKAS-MYRMGVL 142 (294)
T ss_dssp HHHHHTTCEEEEEEC-------CHHHHHHHHHHTTCSSCSCEEEEECCSSGG-------GHHHHHHHHHHHH-HTTCEEE
T ss_pred HHHHhCCceeEEEEEec--CChhHHHHHHHHHcCCCCCCCCEEEeCCCCChh-------hhHHHHHHHHHHH-HhCceEE
Confidence 88888777766655555 47889999888775 57899999864431 2223777777654 4578887
Q ss_pred EEecCCCCCCcccccCCcceEEEEEccC--------C--cchHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCC
Q 004461 562 ILIDRGLGGTTQVSASNVSYTITVLFFG--------G--RDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDM 631 (752)
Q Consensus 562 Ilv~rg~~~~~~~~~~~~~~~I~v~~~g--------g--~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~~~~~~ 631 (752)
+|-+.... .....++|=+=..| + .+-.-++-+|-.+..+.++++.++.+++ +
T Consensus 143 il~~~~~~------~fg~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~------------d 204 (294)
T 3g40_A 143 LFSKHPQA------GLGRQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAP------------T 204 (294)
T ss_dssp EEECCTTT------TTTTSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECS------------S
T ss_pred EEecCCcc------CCCCCceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecC------------C
Confidence 77543211 11123456554222 2 3445688888888888899999999985 3
Q ss_pred cCccccHHHHHHHHHhhcCCCCCeEEEEEEecChHHHHHHHHhccCCCEEEEccCC
Q 004461 632 AGNASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMP 687 (752)
Q Consensus 632 ~~~~~~d~~~l~e~~~~~~~~~~v~~~e~~v~~g~~~~~~i~~~~~~DLiivG~~~ 687 (752)
++.++..+.+++++....+-.... + ++. .+-.+++++..++||+++|-..
T Consensus 205 e~a~~~a~~~l~~Lv~~~Ri~a~~-~--vv~---~~F~~il~~s~~ADL~flGl~~ 254 (294)
T 3g40_A 205 AIQAQAAENFLQSLAELARIPNVK-M--QVL---RENPIKSSKLPFASLHIFSLDP 254 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSCE-E--EEE---SSCTTTSSSCCCCSEEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHhcCCceE-E--Eec---CchHHHHhhCcCCCEEEEcCCC
Confidence 444566788888888776432222 2 122 2234556665449999999876
No 42
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=69.83 E-value=7.8 Score=40.38 Aligned_cols=56 Identities=11% Similarity=-0.015 Sum_probs=41.8
Q ss_pred eEEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhc
Q 004461 581 YTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKT 649 (752)
Q Consensus 581 ~~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~ 649 (752)
.++++.|.||+|+--.|.++.+.....+.++.++++.+...+ ....++++++..++
T Consensus 47 ~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~-------------~et~~~v~~~~~~~ 102 (325)
T 1zun_A 47 DNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKF-------------QEMYRFRDQMVEEM 102 (325)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCC-------------HHHHHHHHHHHHTT
T ss_pred CCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCC-------------HHHHHHHHHHHHHc
Confidence 478999999999999999998887655566778888654322 22467888887765
No 43
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=59.14 E-value=31 Score=37.64 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=46.2
Q ss_pred ceEEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhc
Q 004461 580 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKT 649 (752)
Q Consensus 580 ~~~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~ 649 (752)
..+++|.+.||+|+--.+.++.++.+..+.+++.+++...-. ..+.+.+.++++++..++
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglr----------g~~s~~~~~~v~~~~~~l 77 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFR----------GRESEEEMEFVKRFCVER 77 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTC----------THHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCC----------ccccHHHHHHHHHHHHHc
Confidence 358999999999999999999999888899999999974321 011234567888887765
No 44
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=55.21 E-value=26 Score=29.37 Aligned_cols=56 Identities=9% Similarity=0.014 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEecC
Q 004461 507 DMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDR 566 (752)
Q Consensus 507 ~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv~r 566 (752)
...+.|.++++|++++.||+|.-.+. +|.-+......+..++++-++ +.|| .++|-
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~m--dGt~~~~~~~~~~f~~~L~~~-~lpV-~~~DE 93 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRT--DLKESAQAGKVLPLVEALRAR-GVEV-ELWDE 93 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCC--CSSSCCCSSTTHHHHHHHHHT-TCEE-EEECC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCC--CCCcCHHHHHHHHHHHHHhcC-CCCE-EEECC
Confidence 45678999999999999999976442 233222233377888888777 8998 57775
No 45
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=50.19 E-value=25 Score=38.08 Aligned_cols=59 Identities=22% Similarity=0.163 Sum_probs=45.3
Q ss_pred ceEEEEEccCCcchHHHHHHHHHHhhC-CCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhc
Q 004461 580 SYTITVLFFGGRDDREALACGARMAEH-PGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKT 649 (752)
Q Consensus 580 ~~~I~v~~~gg~ddreAL~~a~~ma~~-~~~~ltvl~v~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~ 649 (752)
..+|+|.+.||+|+--.+.++.++.+. .+.+++.+++...-. .+.+.+.++.+++..++
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr-----------~~s~~~~~~v~~~~~~l 72 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLS-----------ANADAWVTHCENVCQQW 72 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCC-----------SSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCC-----------cccHHHHHHHHHHHHHc
Confidence 358999999999999999999988877 889999999964321 12234567788877765
No 46
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=49.16 E-value=66 Score=30.68 Aligned_cols=52 Identities=12% Similarity=-0.137 Sum_probs=37.0
Q ss_pred eEEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhc
Q 004461 581 YTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKT 649 (752)
Q Consensus 581 ~~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~ 649 (752)
.+|+|.|.||+|+--.|.++.+.. -++.++++.+.... ..+.++++++..++
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----~~v~~v~vd~g~~~-------------~e~~~~v~~~~~~~ 96 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTGYLF-------------PETYRFIDELTDKL 96 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----TTCEEEEEECSCBC-------------HHHHHHHHHHHHHT
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----CCCeEEEeeCCCCC-------------HHHHHHHHHHHHHh
Confidence 389999999999998888888774 24667777643221 22457778877765
No 47
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=45.80 E-value=62 Score=32.11 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=26.0
Q ss_pred EccCCcchHHHHHHHHHHhhCCCe--EEEEEEEee
Q 004461 586 LFFGGRDDREALACGARMAEHPGI--SFIVIRFLL 618 (752)
Q Consensus 586 ~~~gg~ddreAL~~a~~ma~~~~~--~ltvl~v~~ 618 (752)
++.-.|.|.+|++.|.|+++. +. +++++.+-+
T Consensus 32 ~~~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~ 65 (252)
T 1efp_B 32 KMSMNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGV 65 (252)
T ss_dssp CEEECHHHHHHHHHHHHHHTT-TSCSEEEEEEEES
T ss_pred CccCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCC
Confidence 444568899999999999987 66 899887764
No 48
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=44.25 E-value=25 Score=36.20 Aligned_cols=59 Identities=19% Similarity=0.200 Sum_probs=44.1
Q ss_pred ceEEEEEccCCcchHHHHHHHHHHhhCCCeE-EEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhc
Q 004461 580 SYTITVLFFGGRDDREALACGARMAEHPGIS-FIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKT 649 (752)
Q Consensus 580 ~~~I~v~~~gg~ddreAL~~a~~ma~~~~~~-ltvl~v~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~ 649 (752)
..++++.+.||+|+--.+.++.+..+..+.+ ++.+++...-. .+.+.+.++++++..++
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r-----------~~s~~~~~~v~~~a~~l 83 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLR-----------ESAERDEEFCKEFAKER 83 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSS-----------THHHHHHHHHHHHHHHH
T ss_pred CCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCC-----------cccHHHHHHHHHHHHHc
Confidence 3589999999999999999998888777888 99998864321 11233567777777665
No 49
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=43.49 E-value=45 Score=33.38 Aligned_cols=34 Identities=12% Similarity=0.098 Sum_probs=27.3
Q ss_pred EEccCCcchHHHHHHHHHHhhCCCe--EEEEEEEee
Q 004461 585 VLFFGGRDDREALACGARMAEHPGI--SFIVIRFLL 618 (752)
Q Consensus 585 v~~~gg~ddreAL~~a~~ma~~~~~--~ltvl~v~~ 618 (752)
++..-.|.|.+|++.|.|+++..+. +++++.+-+
T Consensus 31 ~~~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~ 66 (264)
T 1o97_C 31 MMYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGP 66 (264)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEESC
T ss_pred CCCccCHHHHHHHHHHHHHHHhcCCCceEEEEEeCc
Confidence 4555668999999999999987666 888887753
No 50
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=42.81 E-value=15 Score=25.48 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=20.7
Q ss_pred cceEEEEeEEecCCCChHHHHHHHHHhcCccE
Q 004461 492 SRVSVRPMTAISSMSDMHEDICTTAESKRAAI 523 (752)
Q Consensus 492 ~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adL 523 (752)
..|+.+. .+.| +|.++|+.+|.|++.|=
T Consensus 10 kkvslhl--lvdp--dmkdeiikyaqekdfdn 37 (54)
T 3gxq_A 10 KKVSLHL--LVDP--DMKDEIIKYAQEKDFDN 37 (54)
T ss_dssp CCEEEEE--EECH--HHHHHHHHHHHHHSTTC
T ss_pred ceeEEEE--eeCC--chhHHHHHHHHHccchh
Confidence 4455544 4454 89999999999998763
No 51
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=42.72 E-value=60 Score=32.30 Aligned_cols=33 Identities=15% Similarity=-0.008 Sum_probs=26.6
Q ss_pred EEccCCcchHHHHHHHHHHhhCCCe--EEEEEEEee
Q 004461 585 VLFFGGRDDREALACGARMAEHPGI--SFIVIRFLL 618 (752)
Q Consensus 585 v~~~gg~ddreAL~~a~~ma~~~~~--~ltvl~v~~ 618 (752)
+++.-.|.|.+|++.|.|+++. +. +++++.+-+
T Consensus 34 ~~~~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~ 68 (255)
T 1efv_B 34 VKHSMNPFCEIAVEEAVRLKEK-KLVKEVIAVSCGP 68 (255)
T ss_dssp CCEEECHHHHHHHHHHHHHHHT-TSCSEEEEEEEES
T ss_pred CCccCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCC
Confidence 3555568999999999999987 66 899887763
No 52
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=42.67 E-value=50 Score=33.84 Aligned_cols=90 Identities=14% Similarity=0.077 Sum_probs=54.9
Q ss_pred eEEEEEccCCcchHHHHHHHHHHh-h-----------------CCCeEEEEEEEeecccccCCccccCCcCccccHHHHH
Q 004461 581 YTITVLFFGGRDDREALACGARMA-E-----------------HPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVL 642 (752)
Q Consensus 581 ~~I~v~~~gg~ddreAL~~a~~ma-~-----------------~~~~~ltvl~v~~~~~~~~~~~~~~~~~~~~~d~~~l 642 (752)
.++++.|.||+|+--.|.++.+.. + .++.++.++++.+...+ ....+|+
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~f-------------pet~~fv 120 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETF-------------PTLENFV 120 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCC-------------HHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCC-------------HHHHHHH
Confidence 489999999999999888887753 1 12456778887654333 3356888
Q ss_pred HHHHhhcCCCCCeEEEEEEe-----cChHHHHHHHHhccC-CCEEEEccCC
Q 004461 643 SEFKLKTSRNGSVRYEERLV-----RNTAETIAVIREVSR-CNLLLVGRMP 687 (752)
Q Consensus 643 ~e~~~~~~~~~~v~~~e~~v-----~~g~~~~~~i~~~~~-~DLiivG~~~ 687 (752)
+++..++. +....... ..-.+......+... .+.+++|+|.
T Consensus 121 ~~~~~~yg----l~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rr 167 (306)
T 2wsi_A 121 LETSERYC----LSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRH 167 (306)
T ss_dssp HHHHHHTT----EEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCC
T ss_pred HHHHHHcC----CCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEec
Confidence 88887752 11111110 111222222333333 8899999998
No 53
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=38.60 E-value=9.7 Score=25.13 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHccc
Q 004461 159 FLVFMGVALSITAFPVLARILAELKL 184 (752)
Q Consensus 159 ~~l~l~~~ls~Ts~~vv~~iL~el~l 184 (752)
.++++|+++|.|++..+..++++++.
T Consensus 5 ~~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 5 DNLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCCChHHHHHHHHHcCC
Confidence 36788999999999999999999884
No 54
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=37.29 E-value=2.5e+02 Score=28.83 Aligned_cols=106 Identities=12% Similarity=0.206 Sum_probs=59.1
Q ss_pred HhhHHHHHHHhhccccchhhchh-hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH---hhhhHHHHHHHH
Q 004461 272 GIFLPLYFVSSGLKTNIATIQGL-QSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGIL---MNTKGLVELIVL 347 (752)
Q Consensus 272 ~~~~piFFv~~Gl~~d~~~l~~~-~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~---l~~rG~v~l~l~ 347 (752)
...+++-+...|++++..++... ..+.......+.-++...+.++..++.++.+.. ...|+. ..|-|..+.++.
T Consensus 46 ~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l~~~--~~~Glil~~~~P~~~~s~v~t 123 (332)
T 3zux_A 46 PWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAE--IAVGVILVGCCPGGTASNVMT 123 (332)
T ss_dssp HHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHH--HHHHHHHHHHSCCCTHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCCChH--HHHHHHHHhcCCchhHHHHHH
Confidence 34566778899999998887632 234434445555666777778888877766653 333332 244455555444
Q ss_pred HhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004461 348 NIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVY 383 (752)
Q Consensus 348 ~~~~~~~~i~~~~~~~lv~~~lv~t~i~~pl~~~l~ 383 (752)
..+. | |.+.-..++....+.+.++.|+.-.++
T Consensus 124 ~~a~--G--d~~la~~~~~~stll~~~~~Pl~~~l~ 155 (332)
T 3zux_A 124 YLAR--G--NVALSVAVTSVSTLTSPLLTPAIFLML 155 (332)
T ss_dssp HHTT--C--CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhC--C--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 2 233333333333344555566665554
No 55
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=32.69 E-value=52 Score=33.71 Aligned_cols=90 Identities=19% Similarity=0.119 Sum_probs=53.5
Q ss_pred eEEEEEccCCcchHHHHHHHHHHh-h-----------------CCCeEEEEEEEeecccccCCccccCCcCccccHHHHH
Q 004461 581 YTITVLFFGGRDDREALACGARMA-E-----------------HPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVL 642 (752)
Q Consensus 581 ~~I~v~~~gg~ddreAL~~a~~ma-~-----------------~~~~~ltvl~v~~~~~~~~~~~~~~~~~~~~~d~~~l 642 (752)
.++++.|.||+|+--.|.++.+.- + .+...+.++.+.+...+. .-.+|+
T Consensus 59 ~~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~Fp-------------ET~ef~ 125 (308)
T 3fwk_A 59 GEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFK-------------TLENFI 125 (308)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTCCH-------------HHHHHH
T ss_pred CCEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCCCH-------------HHHHHH
Confidence 479999999999999999887742 1 123567788887655544 235788
Q ss_pred HHHHhhcCCCCCeEEEEEEec---ChHHHHHHHHhcc-CCCEEEEccCC
Q 004461 643 SEFKLKTSRNGSVRYEERLVR---NTAETIAVIREVS-RCNLLLVGRMP 687 (752)
Q Consensus 643 ~e~~~~~~~~~~v~~~e~~v~---~g~~~~~~i~~~~-~~DLiivG~~~ 687 (752)
+++..++.- .+ ...... .-.+....+++.+ .+|.+++|.|+
T Consensus 126 d~~~~~ygL--~L--~v~~p~~~~~~~~~cc~~~K~~P~~~AwitG~RR 170 (308)
T 3fwk_A 126 EETSLRYSL--SL--YESDRDKCETMAEAFETFLQVFPETKAIVIGIRH 170 (308)
T ss_dssp HHHHHHTTE--EE--EECCTTSCCCHHHHHHHHHHHCTTCCEEECCCCT
T ss_pred HHHHHHhCC--cE--EEeCCCCCHHHHHHHHHHHHhCCCCCEEEEEeec
Confidence 888877521 11 110000 1123334444444 39999999998
No 56
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=32.17 E-value=3.1e+02 Score=26.81 Aligned_cols=73 Identities=7% Similarity=0.104 Sum_probs=45.2
Q ss_pred cchHHHHHHHhhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCC
Q 004461 478 PNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAP 557 (752)
Q Consensus 478 ~~~i~~~~~~~~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~Ap 557 (752)
..++.+.+++..++.+..+.....-. ..-...+.+...++++|-||+-..... . .. -+-++.+.
T Consensus 25 ~~~~~~gi~~~a~~~g~~~~~~~~~~--~~~~~~~~~~l~~~~vdGiIi~~~~~~---------~----~~-~~~l~~~~ 88 (294)
T 3qk7_A 25 FLEMISWIGIELGKRGLDLLLIPDEP--GEKYQSLIHLVETRRVDALIVAHTQPE---------D----FR-LQYLQKQN 88 (294)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECT--TCCCHHHHHHHHHTCCSEEEECSCCSS---------C----HH-HHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCC--hhhHHHHHHHHHcCCCCEEEEeCCCCC---------h----HH-HHHHHhCC
Confidence 35667777777777666655544322 344567888888899998877542110 0 11 13456778
Q ss_pred CceEEEecCC
Q 004461 558 CSVGILIDRG 567 (752)
Q Consensus 558 C~V~Ilv~rg 567 (752)
.|| |++++.
T Consensus 89 iPv-V~~~~~ 97 (294)
T 3qk7_A 89 FPF-LALGRS 97 (294)
T ss_dssp CCE-EEESCC
T ss_pred CCE-EEECCC
Confidence 898 678874
No 57
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=30.92 E-value=47 Score=33.10 Aligned_cols=55 Identities=7% Similarity=-0.152 Sum_probs=40.8
Q ss_pred eEEEEEccCCcchHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccccCCcCccccHHHHHHHHHhhc
Q 004461 581 YTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKT 649 (752)
Q Consensus 581 ~~I~v~~~gg~ddreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~~~~d~~~l~e~~~~~ 649 (752)
.++++.|.||+|+--.|.++.+.... +.++.++++.+...+. ...++++++..++
T Consensus 42 ~~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg~~~~-------------et~~~v~~~~~~~ 96 (261)
T 2oq2_A 42 PHLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTLHHFP-------------QTLTLKNEIEKKY 96 (261)
T ss_dssp SSEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCSCBCH-------------HHHHHHHHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCCCCCH-------------HHHHHHHHHHHHh
Confidence 37999999999999999999888765 5667788876543322 2467777777765
No 58
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP: c.6.2.5
Probab=30.87 E-value=53 Score=32.39 Aligned_cols=103 Identities=16% Similarity=0.174 Sum_probs=62.7
Q ss_pred HHHHHhhhccceEEEEeEEec-------CCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhc
Q 004461 483 VAFEAFQQLSRVSVRPMTAIS-------SMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKH 555 (752)
Q Consensus 483 ~~~~~~~~~~~v~v~~~~~v~-------~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ 555 (752)
.+++.+.+..+.+++....=+ .....++.|++...+.+.+|++++-. ||.-.+.-+.
T Consensus 87 GAL~a~a~~~G~~l~hVKPHGALYN~~a~d~~~A~av~~av~~~d~~L~l~~l~----------------gs~~~~~A~~ 150 (252)
T 1xw8_A 87 GALATIARAQGGVMRHVKPHGMLYNQAAKEAQLADAIARAVYACDPALILVGLA----------------GSELIRAGKQ 150 (252)
T ss_dssp HHHHHHHHHTTCCEEEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCEEEEET----------------TSHHHHHHHH
T ss_pred HHHHHHHHHcCCEeEEeCcCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecC----------------ChHHHHHHHH
Confidence 466777777788877654322 22356777999999999999999953 3334455555
Q ss_pred CCCceE--EEecCCCCCCcccccCCcceEEEEEccCCcchHHHHHHHHHHhhCC
Q 004461 556 APCSVG--ILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHP 607 (752)
Q Consensus 556 ApC~V~--Ilv~rg~~~~~~~~~~~~~~~I~v~~~gg~ddreAL~~a~~ma~~~ 607 (752)
+-++|. +|.||++.......+.....-+. .|.+++++.+.+|++.-
T Consensus 151 ~Gl~~~~E~FADR~Y~~dG~LvpR~~~gAvi------~d~~~~~~rv~~m~~~g 198 (252)
T 1xw8_A 151 YGLTTREEVFADRGYQADGSLVPRSQSGALI------ENEEQALAQTLEMVQHG 198 (252)
T ss_dssp TTCCEEEEECTTSCBCTTSSBCCTTTCC-----------CTTHHHHHHHHHHHS
T ss_pred cCCcEEEEEeeccccCCCCCEeccCCCCCcc------CCHHHHHHHHHHHHHCC
Confidence 555553 46688764221112222222221 46678999999999764
No 59
>1b35_D CRPV, protein (cricket paralysis virus, VP4); insect picorna-like virus, icosahedral virus; 2.40A {Cricket paralysis virus} SCOP: b.121.4.1
Probab=28.13 E-value=26 Score=25.03 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=17.6
Q ss_pred CccccccccCCCCCCccccc
Q 004461 688 DGELALALSTRSDCLELGPV 707 (752)
Q Consensus 688 ~~~~~~gl~~w~e~peLG~i 707 (752)
-+.+.+||+..+..|+||.+
T Consensus 18 ~gqiseglst~s~ipilgn~ 37 (57)
T 1b35_D 18 LGQISEGLTTLSHIPVLGNI 37 (57)
T ss_dssp CCCCGGGCCCTTCCCCSCCS
T ss_pred hhhhhhhhhhhhcccccccc
Confidence 46778999999999999976
No 60
>2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A {Pseudomonas aeruginosa} PDB: 2xu2_A*
Probab=27.30 E-value=61 Score=31.92 Aligned_cols=108 Identities=9% Similarity=0.086 Sum_probs=64.1
Q ss_pred HHHHHhhhccceEEEEeEEec-------CCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhc
Q 004461 483 VAFEAFQQLSRVSVRPMTAIS-------SMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKH 555 (752)
Q Consensus 483 ~~~~~~~~~~~v~v~~~~~v~-------~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ 555 (752)
.+++.+.+..+.+++....=+ .....++.|++...+.+.+|++++-.- - =||.-.+.-+.
T Consensus 98 GAL~a~a~~~G~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~~---~----------~gs~~~~~A~~ 164 (252)
T 2x5e_A 98 GALDAFCRSLGTQVAYVKPHGALYNDLVGDDELLRAVLDACAAYRKGLPLMVLAL---A----------DNGRELELADE 164 (252)
T ss_dssp HHHHHHHHHTTCCCCEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCCEEEECC---S----------CCHHHHHHHHH
T ss_pred HHHHHHHHHcCCEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEEeCC---C----------CCCHHHHHHHH
Confidence 456777777777665544222 223567779999999999999999530 0 03334444555
Q ss_pred CCCceE--EEecCCCCCCcccccCCcceEEEEEccCCcchHHHHHHHHHHhhCCCe
Q 004461 556 APCSVG--ILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGI 609 (752)
Q Consensus 556 ApC~V~--Ilv~rg~~~~~~~~~~~~~~~I~v~~~gg~ddreAL~~a~~ma~~~~~ 609 (752)
+-+++. +|.||++.......+.....-+. .|.+++++.+.+|++.-.+
T Consensus 165 ~Gl~~~~E~FADR~Y~~dG~LvpR~~~gAvi------~D~~~~~~rv~~m~~~g~V 214 (252)
T 2x5e_A 165 ADVPLLFEAFADRAYLPDGRLAPRRLGGAVH------HDPQRIIEQALAIARGEAF 214 (252)
T ss_dssp HTCCEEEEEESSBCBCTTSSBCCTTSTTSBC------CCHHHHHHHHHHHHHTCEE
T ss_pred cCCcEEEEEeeccccCCCCCEecCCCCCCcc------CCHHHHHHHHHHHHHCCCE
Confidence 545543 57799864221111111111111 4778999999999987543
No 61
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=27.01 E-value=50 Score=29.95 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=39.8
Q ss_pred CCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEecC
Q 004461 505 MSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDR 566 (752)
Q Consensus 505 ~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv~r 566 (752)
.....+.|.++.++++++.|++|.-.. .+|.-.......+.++..+.++.++|| +++|-
T Consensus 40 ~~~~~~~l~~li~~~~~~~ivVGlP~~--~nGt~~~~~~~ar~f~~~L~~~~~lpV-~~vDE 98 (150)
T 1vhx_A 40 GDYGLSRLSELIKDYTIDKIVLGFPKN--MNGTVGPRGEASQTFAKVLETTYNVPV-VLWDE 98 (150)
T ss_dssp TBCCHHHHHHHHTTSEEEEEEEECCCC--BTTBCCHHHHHHHHHHHHHHHHHCSCE-EEECC
T ss_pred hHHHHHHHHHHHHHcCCCEEEEeeeec--CCcchhHHHHHHHHHHHHHHHhhCCCE-EEecC
Confidence 346789999999999999999996532 223221111124667777777778998 45665
No 62
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=26.24 E-value=4.6e+02 Score=25.48 Aligned_cols=76 Identities=20% Similarity=0.110 Sum_probs=42.0
Q ss_pred cchHHHHHHHhhhccceEEEEeEEecCCCChH--HHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhc
Q 004461 478 PNHIVVAFEAFQQLSRVSVRPMTAISSMSDMH--EDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKH 555 (752)
Q Consensus 478 ~~~i~~~~~~~~~~~~v~v~~~~~v~~~~~~~--~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ 555 (752)
..++.+.+++..++.+..+..... ...+.. ...++.+.++++|-||+-..... . ..... +-++.
T Consensus 19 ~~~~~~gi~~~a~~~g~~~~~~~~--~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~-----~------~~~~~-~~~~~ 84 (305)
T 3g1w_A 19 WKRCLKGFEDAAQALNVTVEYRGA--AQYDIQEQITVLEQAIAKNPAGIAISAIDPV-----E------LTDTI-NKAVD 84 (305)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEC--SSSCHHHHHHHHHHHHHHCCSEEEECCSSTT-----T------THHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEEeCC--CcCCHHHHHHHHHHHHHhCCCEEEEcCCCHH-----H------HHHHH-HHHHH
Confidence 356677777777776666654221 112332 34566677789997776432111 0 12222 23456
Q ss_pred CCCceEEEecCCC
Q 004461 556 APCSVGILIDRGL 568 (752)
Q Consensus 556 ApC~V~Ilv~rg~ 568 (752)
+..|| |++++..
T Consensus 85 ~~iPv-V~~~~~~ 96 (305)
T 3g1w_A 85 AGIPI-VLFDSGA 96 (305)
T ss_dssp TTCCE-EEESSCC
T ss_pred CCCcE-EEECCCC
Confidence 78887 6788743
No 63
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.99 E-value=1.3e+02 Score=30.15 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=25.5
Q ss_pred ceEEEEEccCCc---chHHHHHHHHHHhhCCCeEEEEEEEee
Q 004461 580 SYTITVLFFGGR---DDREALACGARMAEHPGISFIVIRFLL 618 (752)
Q Consensus 580 ~~~I~v~~~gg~---ddreAL~~a~~ma~~~~~~ltvl~v~~ 618 (752)
.+||++ |.+|+ +..+...+++++.++ ++.++++.|-.
T Consensus 107 ~~rIIl-f~ds~~~~~~~~l~~lak~lkk~-gI~v~vIgFG~ 146 (268)
T 4b4t_W 107 HQRIVA-FVCSPISDSRDELIRLAKTLKKN-NVAVDIINFGE 146 (268)
T ss_dssp EEEEEE-EECSCCSSCHHHHHHHHHHHHHH-TEEEEEEEESS
T ss_pred ceEEEE-EECCCCCCCHHHHHHHHHHHHHc-CCEEEEEEeCC
Confidence 345554 44443 556677778777776 99999999964
No 64
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii} SCOP: c.6.2.5
Probab=25.78 E-value=50 Score=32.61 Aligned_cols=104 Identities=12% Similarity=0.139 Sum_probs=61.7
Q ss_pred HHHHHhhhccceEEEEeEEec-------CCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhc
Q 004461 483 VAFEAFQQLSRVSVRPMTAIS-------SMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKH 555 (752)
Q Consensus 483 ~~~~~~~~~~~v~v~~~~~v~-------~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ 555 (752)
.+++.+.+..+.+++....=+ .....++.|++...+.+.+|++++-.| |.-.+.-+.
T Consensus 92 GAL~a~a~~~G~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~g----------------s~~~~~A~~ 155 (255)
T 1v6t_A 92 GALYAFAKAEGLELQHVKPHGALYNAMVKEEDLARAVIEGILDFDKDLILVTLSN----------------SRVADIAEE 155 (255)
T ss_dssp HHHHHHHHHTTCCEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCEEEEETT----------------CHHHHHHHH
T ss_pred HHHHHHHHHcCCEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecCC----------------hHHHHHHHH
Confidence 466777777788877654222 123456779999999999999999542 223344444
Q ss_pred CCCceE--EEecCCCCCCcccccCCcceEEEEEccCCcchHHHHHHHHHHhhCCC
Q 004461 556 APCSVG--ILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPG 608 (752)
Q Consensus 556 ApC~V~--Ilv~rg~~~~~~~~~~~~~~~I~v~~~gg~ddreAL~~a~~ma~~~~ 608 (752)
+-+++. +|.||++......-+.....-+. .|.+++++.+.+|++.-.
T Consensus 156 ~Gl~~~~E~FADR~Y~~dG~LvpR~~~gAvi------~d~~~~~~rv~~m~~~g~ 204 (255)
T 1v6t_A 156 MGLKVAHEVFADRAYNPDGTLVPRGRPGAVI------EDKEEIAERVISMVKDGG 204 (255)
T ss_dssp HTCCEEEEECTTBCBCTTSCBCC-----CBC------CCHHHHHHHHHHHHHHSE
T ss_pred cCCcEEEEEeeccccCCCCCEecCCCCCCcc------CCHHHHHHHHHHHHHCCC
Confidence 444442 46688764211111111111111 477899999999997643
No 65
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=25.39 E-value=1e+02 Score=28.00 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=31.5
Q ss_pred EEeEEecCCCChHHHHHHHHHhcCccEEEecCCccccc
Q 004461 497 RPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRL 534 (752)
Q Consensus 497 ~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~ 534 (752)
+....+-|...++..|.++|++.+||+||-|..+..-.
T Consensus 91 DLIYsirPP~El~~~i~~lA~~v~adliI~pL~~E~~~ 128 (153)
T 2k4m_A 91 ALIYSIRPPAEIHSSLMRVADAVGARLIIKPLTGEDIV 128 (153)
T ss_dssp EEEEEESCCTTTHHHHHHHHHHHTCEEEEECBTTBCCC
T ss_pred CEEEEcCCCHHHHHHHHHHHHHcCCCEEEEcCCCCcCC
Confidence 34445668889999999999999999999999776543
No 66
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} SCOP: c.6.2.5
Probab=24.87 E-value=50 Score=32.59 Aligned_cols=105 Identities=13% Similarity=0.111 Sum_probs=63.1
Q ss_pred HHHHHhhhccceEEEEeEEec-------CCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhc
Q 004461 483 VAFEAFQQLSRVSVRPMTAIS-------SMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKH 555 (752)
Q Consensus 483 ~~~~~~~~~~~v~v~~~~~v~-------~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ 555 (752)
.+++.+.+..+.+++....=+ .....++.|++...+.+.+|++++-. ||.-.+.-+.
T Consensus 92 GAL~a~a~~~G~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~----------------gs~~~~~A~~ 155 (250)
T 2dfa_A 92 GALSAFLKAEGLPLHHVKPHGALYLKACRDRETARAIALAVKAFDPGLPLVVLP----------------GTVYEEEARK 155 (250)
T ss_dssp HHHHHHHHHTTCCCCCBCCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCCEEECT----------------TSHHHHHHHH
T ss_pred HHHHHHHHHcCCEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecC----------------ChHHHHHHHH
Confidence 456777776666665543221 12345677999999999999999953 3334455555
Q ss_pred CCCceE--EEecCCCCCCcccccCCcceEEEEEccCCcchHHHHHHHHHHhhCCCe
Q 004461 556 APCSVG--ILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGI 609 (752)
Q Consensus 556 ApC~V~--Ilv~rg~~~~~~~~~~~~~~~I~v~~~gg~ddreAL~~a~~ma~~~~~ 609 (752)
+-+++. +|.||++.......+.....-+. .|.+++++.+.+|++.-.+
T Consensus 156 ~Gl~~~~E~FADR~Y~~dG~LvpR~~~gAvi------~d~~~~~~rv~~m~~~g~V 205 (250)
T 2dfa_A 156 AGLRVVLEAFPERAYLRSGQLAPRSMPGSWI------TDPEEAARRALRMVLEGKV 205 (250)
T ss_dssp TTCCEEEEECTTBCBCTTSSBCCTTSTTCBC------CCHHHHHHHHHHHHHTSEE
T ss_pred cCCcEEEEEeeccccCCCCCEecCCCCCCcc------CCHHHHHHHHHHHHHCCCE
Confidence 555543 46688764211111111111111 4778999999999987543
No 67
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=24.44 E-value=2.7e+02 Score=28.14 Aligned_cols=73 Identities=10% Similarity=0.068 Sum_probs=40.4
Q ss_pred chHHHHHHHhhhccceEEEEeEEecCCCChH---HHHHHHHHh-cCccEEEecCCcccccCCccccccchhHHHHHHHhh
Q 004461 479 NHIVVAFEAFQQLSRVSVRPMTAISSMSDMH---EDICTTAES-KRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLK 554 (752)
Q Consensus 479 ~~i~~~~~~~~~~~~v~v~~~~~v~~~~~~~---~~I~~~A~e-~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~ 554 (752)
..+.+.+++..++.++.+.....- .+.. +.|-++..+ +++|-||+-.. ... ..... +-++
T Consensus 20 ~~~~~g~~~~a~~~g~~~~~~~~~---~~~~~~~~~i~~~i~~~~~vDgiIi~~~------~~~------~~~~~-~~~~ 83 (350)
T 3h75_A 20 VSYSQFMQAAARDLGLDLRILYAE---RDPQNTLQQARELFQGRDKPDYLMLVNE------QYV------APQIL-RLSQ 83 (350)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECT---TCHHHHHHHHHHHHHSSSCCSEEEEECC------SSH------HHHHH-HHHT
T ss_pred HHHHHHHHHHHHHcCCeEEEEECC---CCHHHHHHHHHHHHhcCCCCCEEEEeCc------hhh------HHHHH-HHHH
Confidence 456666777776666666554321 2333 234444444 79998777421 001 12222 3456
Q ss_pred cCCCceEEEecCCC
Q 004461 555 HAPCSVGILIDRGL 568 (752)
Q Consensus 555 ~ApC~V~Ilv~rg~ 568 (752)
.+..|| |++++..
T Consensus 84 ~~giPv-V~~~~~~ 96 (350)
T 3h75_A 84 GSGIKL-FIVNSPL 96 (350)
T ss_dssp TSCCEE-EEEESCC
T ss_pred hCCCcE-EEEcCCC
Confidence 788998 6777754
No 68
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=23.92 E-value=60 Score=28.98 Aligned_cols=57 Identities=18% Similarity=0.113 Sum_probs=39.6
Q ss_pred ChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEecC
Q 004461 507 DMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDR 566 (752)
Q Consensus 507 ~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv~r 566 (752)
...+.|.+++++++++.||+|...+ .+|.-+......+..++++-++-+.|| .++|-
T Consensus 40 ~~~~~l~~li~e~~v~~iVvGlP~~--mdGt~~~~~~~~~~f~~~L~~~~~lpV-~~~DE 96 (138)
T 1nu0_A 40 PDWNIIERLLKEWQPDEIIVGLPLN--MDGTEQPLTARARKFANRIHGRFGVEV-KLHDE 96 (138)
T ss_dssp ECHHHHHHHHHHHCCSEEEEEEEEC--TTSCBCHHHHHHHHHHHHHHHHHCCCE-EEEEE
T ss_pred hHHHHHHHHHHHcCCCEEEEecccC--CCcCcCHHHHHHHHHHHHHHHHhCCCE-EEEcC
Confidence 4578999999999999999996543 233322222235677777766668998 56765
No 69
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=22.09 E-value=5.9e+02 Score=25.30 Aligned_cols=85 Identities=9% Similarity=-0.110 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEecCCCCCCcccccCCcceEEEEEccC
Q 004461 510 EDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFG 589 (752)
Q Consensus 510 ~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv~rg~~~~~~~~~~~~~~~I~v~~~g 589 (752)
+.+.++.++.++|.||.|.... ...-...++++...|+ |......... .... .. +....
T Consensus 62 ~~~~~l~~~~~v~~iig~~~s~-------------~~~~~~~~~~~~~iP~-v~~~~~~~~~---~~~~--~~--~~~~~ 120 (358)
T 3hut_A 62 TIARAFVDDPRVVGVLGDFSST-------------VSMAAGSIYGKEGMPQ-LSPTAAHPDY---IKIS--PW--QFRAI 120 (358)
T ss_dssp HHHHHHHHCTTEEEEEECSSHH-------------HHHHHHHHHHHHTCCE-EESSCCCGGG---TTSC--TT--EEESS
T ss_pred HHHHHHhccCCcEEEEcCCCcH-------------HHHHHHHHHHHCCCcE-EecCCCCccc---ccCC--Ce--EEEec
Confidence 3456667689999999775311 1112235667778886 3443321100 0010 11 11122
Q ss_pred CcchHHHHHHHHHHhhCCCeEEEEEE
Q 004461 590 GRDDREALACGARMAEHPGISFIVIR 615 (752)
Q Consensus 590 g~ddreAL~~a~~ma~~~~~~ltvl~ 615 (752)
..+..++-..+..+.+.-.-++.+++
T Consensus 121 ~~~~~~~~~~~~~l~~~g~~~ia~i~ 146 (358)
T 3hut_A 121 TTPAFEGPNNAAWMIGDGFTSVAVIG 146 (358)
T ss_dssp CCGGGHHHHHHHHHHHTTCCEEEEEE
T ss_pred CChHHHHHHHHHHHHHcCCCEEEEEe
Confidence 23344455555555665445666665
No 70
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=21.32 E-value=5.5e+02 Score=24.67 Aligned_cols=74 Identities=12% Similarity=0.019 Sum_probs=42.8
Q ss_pred chHHHHHHHhhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCC
Q 004461 479 NHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPC 558 (752)
Q Consensus 479 ~~i~~~~~~~~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC 558 (752)
.++.+.+++..++.+..+.....-. ...-....++...++++|-||+-.... .+ .. -+-++.+..
T Consensus 24 ~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~-----------~~-~~~~~~~~i 88 (291)
T 3egc_A 24 AEVASGVESEARHKGYSVLLANTAE-DIVREREAVGQFFERRVDGLILAPSEG--EH-----------DY-LRTELPKTF 88 (291)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECCCSS--CC-----------HH-HHHSSCTTS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHHCCCCEEEEeCCCC--Ch-----------HH-HHHhhccCC
Confidence 4566677777777676665443211 012233477778889999887754311 00 11 134567788
Q ss_pred ceEEEecCCC
Q 004461 559 SVGILIDRGL 568 (752)
Q Consensus 559 ~V~Ilv~rg~ 568 (752)
|| |++++..
T Consensus 89 Pv-V~~~~~~ 97 (291)
T 3egc_A 89 PI-VAVNREL 97 (291)
T ss_dssp CE-EEESSCC
T ss_pred CE-EEEeccc
Confidence 98 6788743
No 71
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=20.83 E-value=2.5e+02 Score=27.76 Aligned_cols=76 Identities=12% Similarity=-0.015 Sum_probs=46.0
Q ss_pred CcchHHHHHHHhhhccceEEEEeEEecCCCChH--HHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhh
Q 004461 477 NPNHIVVAFEAFQQLSRVSVRPMTAISSMSDMH--EDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLK 554 (752)
Q Consensus 477 ~~~~i~~~~~~~~~~~~v~v~~~~~v~~~~~~~--~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~ 554 (752)
...++.+.+++..++.++.+..... ..+.. .+.++...++++|-||+....... .....+ -++
T Consensus 16 ~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~-----------~~~~~~-~~~ 80 (313)
T 3m9w_A 16 RWQKDRDIFVKKAESLGAKVFVQSA---NGNEETQMSQIENMINRGVDVLVIIPYNGQV-----------LSNVVK-EAK 80 (313)
T ss_dssp TTHHHHHHHHHHHHHTSCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEEECSSTTS-----------CHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChhh-----------hHHHHH-HHH
Confidence 3567788888888777776655432 12333 356777788899987775421110 222233 356
Q ss_pred cCCCceEEEecCCC
Q 004461 555 HAPCSVGILIDRGL 568 (752)
Q Consensus 555 ~ApC~V~Ilv~rg~ 568 (752)
.+..|| |++++..
T Consensus 81 ~~~iPv-V~~~~~~ 93 (313)
T 3m9w_A 81 QEGIKV-LAYDRMI 93 (313)
T ss_dssp TTTCEE-EEESSCC
T ss_pred HCCCeE-EEECCcC
Confidence 678898 6788743
No 72
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=20.38 E-value=3.2e+02 Score=26.74 Aligned_cols=77 Identities=10% Similarity=0.054 Sum_probs=42.5
Q ss_pred cchHHHHHHHhhhccceEEEEeEEecCCCChHH--HHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhc
Q 004461 478 PNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHE--DICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKH 555 (752)
Q Consensus 478 ~~~i~~~~~~~~~~~~v~v~~~~~v~~~~~~~~--~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ 555 (752)
...+.+.+++..++.++.+.....- .+.+..+ ..++.+.++++|-||+....... ..... +-++.
T Consensus 18 ~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~-----------~~~~~-~~~~~ 84 (297)
T 3rot_A 18 WTSLFQGAKKAAEELKVDLQILAPP-GANDVPKQVQFIESALATYPSGIATTIPSDTA-----------FSKSL-QRANK 84 (297)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEECCS-SSCCHHHHHHHHHHHHHTCCSEEEECCCCSST-----------THHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHhCcEEEEECCC-CcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHH-----------HHHHH-HHHHH
Confidence 3566677777776666666543321 1123333 46666777899988774321110 22222 23455
Q ss_pred CCCceEEEecCCC
Q 004461 556 APCSVGILIDRGL 568 (752)
Q Consensus 556 ApC~V~Ilv~rg~ 568 (752)
+..|| |++++..
T Consensus 85 ~giPv-V~~~~~~ 96 (297)
T 3rot_A 85 LNIPV-IAVDTRP 96 (297)
T ss_dssp HTCCE-EEESCCC
T ss_pred CCCCE-EEEcCCC
Confidence 67888 6788743
Done!