Query 004462
Match_columns 752
No_of_seqs 247 out of 768
Neff 4.5
Searched_HMMs 29240
Date Tue Mar 26 01:53:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004462.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004462hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gia_A Uncharacterized protein 88.3 1.5 5.1E-05 46.6 9.4 63 345-414 297-359 (444)
2 3l1l_A Arginine/agmatine antip 78.4 12 0.0004 39.6 11.1 14 346-359 300-313 (445)
3 4djk_A Probable glutamate/gamm 72.3 53 0.0018 35.3 14.5 19 458-476 444-462 (511)
4 3rhw_A Avermectin-sensitive gl 21.3 1.5E+02 0.0052 30.9 6.8 48 368-419 216-263 (347)
5 2rdd_B UPF0092 membrane protei 16.2 2.1E+02 0.0073 21.0 4.6 30 457-486 1-30 (37)
6 1nrp_R Receptor based peptide 14.8 54 0.0019 22.4 0.9 17 298-314 4-20 (26)
7 2od6_A Hypothetical protein; m 12.7 1.9E+02 0.0064 25.4 4.0 26 558-584 46-71 (110)
8 3bkd_A Transmembrane domain of 12.5 58 0.002 22.6 0.6 15 127-141 8-22 (26)
9 3rko_A NADH-quinone oxidoreduc 12.0 3.5E+02 0.012 25.7 6.1 43 436-478 72-121 (147)
10 3lbw_A M2 protein; proton chan 11.9 63 0.0021 21.9 0.6 15 127-141 5-19 (23)
No 1
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=88.26 E-value=1.5 Score=46.58 Aligned_cols=63 Identities=8% Similarity=0.047 Sum_probs=30.8
Q ss_pred hHHHHHHHhCCCCceeEEecCCccCCceeechhHHHHHHHhhheeEEeCCchhhhhhhhcchhhHHHHHH
Q 004462 345 SCIKQAMALGCFPRLKIIHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSS 414 (752)
Q Consensus 345 Sii~Qai~Lg~fPr~kIvHTS~~~~GQIYIP~VNw~Lmi~~i~vv~~F~~s~~l~~AYGiAV~~vM~iTT 414 (752)
-+....-+-|.+|+.= -++++ ++ |...-++.....++...+-+-+.+.+.++++...+..++.
T Consensus 297 R~l~a~a~dg~lP~~f-~~~~~--~~----P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 359 (444)
T 3gia_A 297 NVAYSLAKDGELPEFF-ERKVW--FK----STEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVI 359 (444)
T ss_dssp HHHHHHHHHSSCCSSC-CTTSC--CS----CTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHH-hCCCC--CC----CcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 3444455778999631 12221 22 6533333322222222234566777777766655554443
No 2
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=78.43 E-value=12 Score=39.61 Aligned_cols=14 Identities=36% Similarity=0.494 Sum_probs=9.0
Q ss_pred HHHHHHHhCCCCce
Q 004462 346 CIKQAMALGCFPRL 359 (752)
Q Consensus 346 ii~Qai~Lg~fPr~ 359 (752)
+....-+-|.+||.
T Consensus 300 ~~~~~a~dg~lP~~ 313 (445)
T 3l1l_A 300 TAKAAADDGLFPPI 313 (445)
T ss_dssp HHHHHHHTTSSCGG
T ss_pred HHHHHHhCCCCcHH
Confidence 33455577899963
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=72.26 E-value=53 Score=35.30 Aligned_cols=19 Identities=11% Similarity=0.182 Sum_probs=11.3
Q ss_pred ccHHHHHHHHHHHHHHHHH
Q 004462 458 GWLPLAFASVFLCVMYIWN 476 (752)
Q Consensus 458 GW~pl~ia~v~~~iM~~W~ 476 (752)
.|...++++++.+....|-
T Consensus 444 ~~~~~~~~~~~~~~~i~~~ 462 (511)
T 4djk_A 444 MYVELLVVSFLVVLALPFI 462 (511)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6777666666555544443
No 4
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=21.34 E-value=1.5e+02 Score=30.94 Aligned_cols=48 Identities=25% Similarity=0.351 Sum_probs=24.3
Q ss_pred cCCceeechhHHHHHHHhhheeEEeCCchhhhhhhhcchhhHHHHHHHHHHH
Q 004462 368 RMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTI 419 (752)
Q Consensus 368 ~~GQIYIP~VNw~Lmi~~i~vv~~F~~s~~l~~AYGiAV~~vM~iTT~L~~~ 419 (752)
+.=|+|+|.+ ++++ +..+.-+=..++.+.==+++++..+.+|+++..+
T Consensus 216 y~~~l~iP~~--li~~--ls~~sF~lp~~~~~~Rv~lgit~lLt~tv~~~~~ 263 (347)
T 3rhw_A 216 YLLQLYIPSC--MLVI--VSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGI 263 (347)
T ss_dssp HHHHTHHHHH--HHHH--HHHTTTTSCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeehhHH--HHHH--HhheEEeccCCCCcceEEEEeehHHHHHHHHHHH
Confidence 4448999986 2222 2222222233333333456766666666666544
No 5
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=16.18 E-value=2.1e+02 Score=20.96 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=15.1
Q ss_pred CccHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004462 457 GGWLPLAFASVFLCVMYIWNYGSVLKYRSE 486 (752)
Q Consensus 457 GGW~pl~ia~v~~~iM~~W~~G~~~~~~~~ 486 (752)
|||..++.-++++++||..-.-..+|.+.+
T Consensus 1 ~~~~~~l~~v~~~~ifYFl~iRPQ~Kr~K~ 30 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYFMILRPQQKRTKE 30 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 456555555556666655443333333333
No 6
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=14.80 E-value=54 Score=22.44 Aligned_cols=17 Identities=18% Similarity=0.663 Sum_probs=14.5
Q ss_pred hhhhccCCCcccCcccc
Q 004462 298 AAYLMKYPDSANRIFYD 314 (752)
Q Consensus 298 gA~Ll~~p~~~~npFy~ 314 (752)
-+||++||++.-.||+.
T Consensus 4 rsfllrnpndkyepfwe 20 (26)
T 1nrp_R 4 RSFLLRNPNDKYEPFWE 20 (26)
T ss_pred hhhhhcCCCcccCcccc
Confidence 36899999999999985
No 7
>2od6_A Hypothetical protein; metagenomics target, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE OHA; 1.85A {Uncultured marine organism} SCOP: d.58.4.22
Probab=12.71 E-value=1.9e+02 Score=25.41 Aligned_cols=26 Identities=42% Similarity=0.672 Sum_probs=21.3
Q ss_pred eEEEEEecCCCCcEEEEEEEEeeeccc
Q 004462 558 RFLFRRVGPKDYHMFRCVTRYGYKDVR 584 (752)
Q Consensus 558 R~~v~~~~~~~~~~~r~v~ryGy~d~~ 584 (752)
+|...|+-.++ .+||++..|-|+|..
T Consensus 46 kfsmnrvwnkg-evfrvvmtyeykdra 71 (110)
T 2od6_A 46 KFSMNRVWNKG-EVFRVVMTYEYKDRA 71 (110)
T ss_dssp EEEEEEECSSS-SCEEEEEEEEESSHH
T ss_pred hhhhhhhccCC-cEEEEEEEEEeccch
Confidence 46778887765 699999999999863
No 8
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=12.52 E-value=58 Score=22.62 Aligned_cols=15 Identities=20% Similarity=0.698 Sum_probs=12.8
Q ss_pred ccceehhHHHHHHHH
Q 004462 127 EIDVLGALSLVMYTI 141 (752)
Q Consensus 127 ~~dilGvLSLIfWtL 141 (752)
..+|+|+|-||+|-+
T Consensus 8 aa~iiGilHLiLwIl 22 (26)
T 3bkd_A 8 AASIMGILHLILWIL 22 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 457899999999976
No 9
>3rko_A NADH-quinone oxidoreductase subunit A; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=12.02 E-value=3.5e+02 Score=25.68 Aligned_cols=43 Identities=30% Similarity=0.556 Sum_probs=25.5
Q ss_pred HHHHHH--HHHHHHHHHHhhccCCccHHHHHHHH-----HHHHHHHHHHh
Q 004462 436 PLVFGS--VELLYMSAVLSKIAEGGWLPLAFASV-----FLCVMYIWNYG 478 (752)
Q Consensus 436 ~~~F~~--ie~~f~sa~l~K~~~GGW~pl~ia~v-----~~~iM~~W~~G 478 (752)
.++|++ +|.+|+---...+.+-||..+....+ ++...+-|++|
T Consensus 72 AilFlIFDvEi~~L~Pwa~~~~~~~~~~~~~~~~Fl~iL~~Gl~yEW~~G 121 (147)
T 3rko_A 72 AMFFVIFDVEALYLFAWSTSIRESGWVGFVEAAIFIFVLLAGLVYLVRIG 121 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444 67888766666666677765443322 23345778887
No 10
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=11.90 E-value=63 Score=21.93 Aligned_cols=15 Identities=13% Similarity=0.563 Sum_probs=12.6
Q ss_pred ccceehhHHHHHHHH
Q 004462 127 EIDVLGALSLVMYTI 141 (752)
Q Consensus 127 ~~dilGvLSLIfWtL 141 (752)
..+|+|+|-||+|-+
T Consensus 5 aa~iigIlHLiLwIl 19 (23)
T 3lbw_A 5 AASIIAILHLILWIL 19 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 357899999999976
Done!