Query 004462
Match_columns 752
No_of_seqs 247 out of 768
Neff 4.5
Searched_HMMs 13730
Date Tue Mar 26 01:53:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004462.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004462hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 40.3 7.9 0.00058 35.6 3.2 120 287-419 11-132 (173)
2 d2h8pc1 f.14.1.1 (C:22-78) Pot 22.7 20 0.0015 27.3 2.3 41 287-329 14-54 (57)
3 d2e74h1 f.23.27.1 (H:3-29) Pet 15.3 47 0.0034 21.4 2.3 20 458-477 5-24 (27)
4 d2j5pa1 a.4.5.67 (A:1261-1329) 10.5 71 0.0052 25.1 2.6 13 203-215 36-48 (69)
5 d1xioa_ f.13.1.1 (A:) Sensory 9.5 5.7E+02 0.042 22.7 10.5 22 371-392 67-93 (226)
6 d2ve8a1 a.4.5.67 (A:745-811) D 7.7 1.1E+02 0.0081 23.7 2.6 13 203-215 33-45 (67)
7 d1iray2 b.1.1.4 (Y:102-204) Ty 7.4 94 0.0069 24.8 2.3 26 556-581 57-82 (103)
8 d1krha2 c.25.1.2 (A:206-338) B 7.4 1.4E+02 0.01 24.2 3.5 39 340-378 17-55 (133)
9 d1or7a2 a.177.1.1 (A:-1-111) S 6.5 1.3E+02 0.0098 23.8 2.8 23 711-733 74-96 (113)
10 d1f2qa2 b.1.1.4 (A:86-174) IgE 6.3 1.1E+02 0.0082 23.3 2.1 29 555-583 47-75 (89)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=40.30 E-value=7.9 Score=35.59 Aligned_cols=120 Identities=11% Similarity=0.103 Sum_probs=68.8
Q ss_pred HHHHHHhhhhh--hhhhccCCCcccCcccccccCcchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhCCCCceeEEec
Q 004462 287 FPCLLLAYMGQ--AAYLMKYPDSANRIFYDSVPDSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFPRLKIIHT 364 (752)
Q Consensus 287 ~PaLlL~Y~GQ--gA~Ll~~p~~~~npFy~siP~~l~wP~~vlAtlAtIIASQA~ISg~FSii~Qai~Lg~fPr~kIvHT 364 (752)
+|.|+++.+|+ +|+++.+=|+.-+.+-. =..|.|+ ++-.+.-+++|+.. ++-+++++|-+-+-. .
T Consensus 11 lpWL~i~l~~~~~~a~ii~~Fe~~l~~~~~---La~fiPl--i~~~gGN~G~Qs~t-----i~iR~La~g~i~~~~---~ 77 (173)
T d2yvxa3 11 VRWLVILILTGMVTSSILQGFESVLEAVTA---LAFYVPV--LLGTGGNTGNQSAT-----LIIRALATRDLDLRD---W 77 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTTTTTTS---CCCCSHH--HHHHHHHHHHHHHH-----HHHHHHHTTCSCSSS---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HhcCCchHHHHHHH-----HHHHHHhcccccchh---H
Confidence 35555666655 46677655544332221 2367776 67788889999874 888999999643211 1
Q ss_pred CCccCCceeechhHHHHHHHhhheeEEeCCchhhhhhhhcchhhHHHHHHHHHHH
Q 004462 365 SRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTI 419 (752)
Q Consensus 365 S~~~~GQIYIP~VNw~Lmi~~i~vv~~F~~s~~l~~AYGiAV~~vM~iTT~L~~~ 419 (752)
-+...-++++-.+|-+.+...+.+...++....++-+=|++...+|++.+++=++
T Consensus 78 ~~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G~~ 132 (173)
T d2yvxa3 78 RRVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAM 132 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122344566666766555554444445555555555555555555555554333
No 2
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=22.70 E-value=20 Score=27.25 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=28.1
Q ss_pred HHHHHHhhhhhhhhhccCCCcccCcccccccCcchHHHHHHHH
Q 004462 287 FPCLLLAYMGQAAYLMKYPDSANRIFYDSVPDSLFWPVFVLAA 329 (752)
Q Consensus 287 ~PaLlL~Y~GQgA~Ll~~p~~~~npFy~siP~~l~wP~~vlAt 329 (752)
+-++++--++=+.|+.++.. ++.-|.++|+.++|-++-+.|
T Consensus 14 ~~~i~i~~~s~~~y~~E~~~--~~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 14 LLVIVLLAGSYLAVLAERGA--PGAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHTTS--TTCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCC--CCccccccchhhhhheeeeec
Confidence 33445555666778887754 344599999999998776544
No 3
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=15.26 E-value=47 Score=21.40 Aligned_cols=20 Identities=25% Similarity=0.712 Sum_probs=15.3
Q ss_pred ccHHHHHHHHHHHHHHHHHH
Q 004462 458 GWLPLAFASVFLCVMYIWNY 477 (752)
Q Consensus 458 GW~pl~ia~v~~~iM~~W~~ 477 (752)
||+.|+.-+.-.+-|.+|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 78888877777777888854
No 4
>d2j5pa1 a.4.5.67 (A:1261-1329) DNA translocase FtsK {Escherichia coli [TaxId: 562]}
Probab=10.53 E-value=71 Score=25.06 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=10.1
Q ss_pred hHHHHHHHHHhhh
Q 004462 203 ERALQLKDILERT 215 (752)
Q Consensus 203 ~~~~~~k~~le~s 215 (752)
.||.+|-+.||..
T Consensus 36 nRAariid~LE~~ 48 (69)
T d2j5pa1 36 NRAARIIEQMEAQ 48 (69)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHC
Confidence 5788888888854
No 5
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=9.53 E-value=5.7e+02 Score=22.74 Aligned_cols=22 Identities=9% Similarity=0.363 Sum_probs=11.5
Q ss_pred ceee-chhHHHH----HHHhhheeEEe
Q 004462 371 QIYI-PVINWFL----MIMCVVVVSIF 392 (752)
Q Consensus 371 QIYI-P~VNw~L----mi~~i~vv~~F 392 (752)
|+|. =-++|++ |+..+.++.+.
T Consensus 67 ~v~~~RYiDW~lTtPlll~~l~l~~~~ 93 (226)
T d1xioa_ 67 IAHYARYIDWMVTTPLLLLSLSWTAMQ 93 (226)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eeeHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4444 4578874 44444444433
No 6
>d2ve8a1 a.4.5.67 (A:745-811) DNA translocase FtsK {Pseudomonas aeruginosa [TaxId: 287]}
Probab=7.66 E-value=1.1e+02 Score=23.71 Aligned_cols=13 Identities=23% Similarity=0.417 Sum_probs=9.9
Q ss_pred hHHHHHHHHHhhh
Q 004462 203 ERALQLKDILERT 215 (752)
Q Consensus 203 ~~~~~~k~~le~s 215 (752)
.||.++.+.||..
T Consensus 33 nRAariid~LE~~ 45 (67)
T d2ve8a1 33 NRAARMIEAMEMA 45 (67)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC
Confidence 5788888888853
No 7
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.41 E-value=94 Score=24.84 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=20.8
Q ss_pred CceEEEEEecCCCCcEEEEEEEEeee
Q 004462 556 EERFLFRRVGPKDYHMFRCVTRYGYK 581 (752)
Q Consensus 556 ~eR~~v~~~~~~~~~~~r~v~ryGy~ 581 (752)
+..+.|..+...+.|.|+|+|++.|.
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~n~~~ 82 (103)
T d1iray2 57 KDRLIVMNVAEKHRGNYTCHASYTYL 82 (103)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred CCEEEEcccccccCcEEEEEEEECcC
Confidence 34567888888888999999998764
No 8
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}
Probab=7.40 E-value=1.4e+02 Score=24.20 Aligned_cols=39 Identities=8% Similarity=0.157 Sum_probs=27.8
Q ss_pred hhhhhhHHHHHHHhCCCCceeEEecCCccCCceeechhH
Q 004462 340 ISATFSCIKQAMALGCFPRLKIIHTSRKRMGQIYIPVIN 378 (752)
Q Consensus 340 ISg~FSii~Qai~Lg~fPr~kIvHTS~~~~GQIYIP~VN 378 (752)
|+-..|+++++.+.+.-+++.++|..+...--+|--++.
T Consensus 17 ItP~~s~l~~~~~~~~~~~i~l~~~~r~~~d~~~~~el~ 55 (133)
T d1krha2 17 IAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQLD 55 (133)
T ss_dssp HHHHHHHHHHHHHHCCSSCEEEEEEESSGGGCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCceEEEEeecchhHHHHHHHHH
Confidence 555677888888888877888888888765555555543
No 9
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=6.50 E-value=1.3e+02 Score=23.75 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.3
Q ss_pred chhHHHHHHHHHHHHHHhccccc
Q 004462 711 FFLKKLVINYFYAFLRRNCRAGA 733 (752)
Q Consensus 711 ~~~Kki~in~~y~fLrkN~r~~~ 733 (752)
+++.++++|..+.++||+.|...
T Consensus 74 ~wl~~I~~n~~~d~~R~~~r~~~ 96 (113)
T d1or7a2 74 TWLYRIAVNTAKNYLVAQGRRPP 96 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCC
Confidence 68899999999999999988653
No 10
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.35 E-value=1.1e+02 Score=23.27 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=22.9
Q ss_pred CCceEEEEEecCCCCcEEEEEEEEeeecc
Q 004462 555 LEERFLFRRVGPKDYHMFRCVTRYGYKDV 583 (752)
Q Consensus 555 ~~eR~~v~~~~~~~~~~~r~v~ryGy~d~ 583 (752)
....+.+..+...+-|.|+|.++.++.+.
T Consensus 47 ~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~ 75 (89)
T d1f2qa2 47 ENHNISITNATVEDSGTYYCTGKVWQLDY 75 (89)
T ss_dssp CSSEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred ccceEEEeeeeeecCcEEEEEEEeCCCCe
Confidence 44567888888777899999999887554
Done!