Query 004463
Match_columns 752
No_of_seqs 465 out of 4799
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 23:49:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004463.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004463hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00409 recombination and DNA 100.0 9E-111 2E-115 995.7 71.1 665 12-752 114-782 (782)
2 TIGR01069 mutS2 MutS2 family p 100.0 1E-108 3E-113 974.7 72.9 659 12-752 109-771 (771)
3 COG1193 Mismatch repair ATPase 100.0 1.9E-92 4.1E-97 823.0 50.9 638 17-751 112-753 (753)
4 TIGR01070 mutS1 DNA mismatch r 100.0 1E-59 2.2E-64 562.3 37.5 399 13-455 372-781 (840)
5 PRK05399 DNA mismatch repair p 100.0 9.9E-58 2.1E-62 548.0 37.2 398 13-455 386-796 (854)
6 COG0249 MutS Mismatch repair A 100.0 4.5E-52 9.8E-57 492.0 33.1 392 22-457 397-798 (843)
7 KOG0218 Mismatch repair MSH3 [ 100.0 8.4E-44 1.8E-48 393.7 28.6 328 87-453 686-1025(1070)
8 KOG0219 Mismatch repair ATPase 100.0 5.6E-40 1.2E-44 370.3 29.2 395 19-454 423-833 (902)
9 PF00488 MutS_V: MutS domain V 100.0 2.2E-40 4.9E-45 343.8 12.4 227 190-454 1-231 (235)
10 KOG0221 Mismatch repair ATPase 100.0 5.4E-39 1.2E-43 351.3 22.9 388 25-456 385-794 (849)
11 KOG0220 Mismatch repair ATPase 100.0 4.8E-38 1E-42 349.7 29.2 393 14-453 392-809 (867)
12 cd03285 ABC_MSH2_euk MutS2 hom 100.0 3.4E-37 7.3E-42 317.7 16.6 196 257-454 18-220 (222)
13 cd03286 ABC_MSH6_euk MutS6 hom 100.0 1.8E-37 3.9E-42 318.2 13.1 190 257-448 18-218 (218)
14 KOG0217 Mismatch repair ATPase 100.0 5.6E-36 1.2E-40 344.2 25.6 373 43-453 705-1087(1125)
15 cd03280 ABC_MutS2 MutS2 homolo 100.0 3.5E-37 7.6E-42 312.8 13.9 185 256-440 16-200 (200)
16 cd03287 ABC_MSH3_euk MutS3 hom 100.0 1E-36 2.2E-41 313.4 13.9 188 259-448 23-222 (222)
17 cd03284 ABC_MutS1 MutS1 homolo 100.0 1.6E-35 3.4E-40 304.2 15.7 194 257-451 19-215 (216)
18 cd03281 ABC_MSH5_euk MutS5 hom 100.0 8.8E-35 1.9E-39 298.0 14.6 184 256-440 16-213 (213)
19 cd03282 ABC_MSH4_euk MutS4 hom 100.0 1.5E-34 3.3E-39 294.1 14.7 179 259-439 21-203 (204)
20 smart00534 MUTSac ATPase domai 100.0 2E-34 4.4E-39 289.1 11.6 181 270-451 1-184 (185)
21 cd03243 ABC_MutS_homologs The 100.0 1.2E-33 2.5E-38 287.3 12.8 182 257-440 19-202 (202)
22 PRK10636 putative ABC transpor 100.0 2.9E-30 6.4E-35 304.0 30.2 169 240-414 309-511 (638)
23 cd03283 ABC_MutS-like MutS-lik 100.0 3.4E-31 7.3E-36 268.8 15.0 181 257-440 15-199 (199)
24 COG0488 Uup ATPase components 100.0 3.4E-30 7.4E-35 293.8 21.1 299 62-415 188-520 (530)
25 COG1120 FepC ABC-type cobalami 100.0 2.1E-30 4.5E-35 269.1 15.3 167 243-411 2-220 (258)
26 COG1126 GlnQ ABC-type polar am 100.0 1.4E-29 3E-34 252.1 16.0 166 243-411 2-217 (240)
27 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.6E-29 3.5E-34 261.2 14.8 166 242-410 3-218 (254)
28 COG1127 Ttg2A ABC-type transpo 100.0 5.5E-29 1.2E-33 251.3 15.5 167 242-411 7-227 (263)
29 PRK11147 ABC transporter ATPas 100.0 4.9E-28 1.1E-32 285.5 26.0 172 240-417 316-525 (635)
30 COG1116 TauB ABC-type nitrate/ 100.0 8.5E-28 1.8E-32 245.6 16.4 162 243-406 3-207 (248)
31 COG1131 CcmA ABC-type multidru 100.0 7.8E-28 1.7E-32 258.0 15.0 167 243-412 4-219 (293)
32 COG4555 NatA ABC-type Na+ tran 99.9 7.8E-28 1.7E-32 236.5 11.8 159 243-411 1-214 (245)
33 PRK13536 nodulation factor exp 99.9 2.1E-27 4.5E-32 259.7 15.5 170 240-411 38-253 (340)
34 PRK13537 nodulation ABC transp 99.9 2.2E-27 4.8E-32 256.3 15.2 168 242-411 6-219 (306)
35 COG3638 ABC-type phosphate/pho 99.9 5.2E-27 1.1E-31 236.5 16.4 169 242-412 2-230 (258)
36 COG1125 OpuBA ABC-type proline 99.9 3E-27 6.5E-32 239.8 13.8 167 243-411 1-217 (309)
37 COG1136 SalX ABC-type antimicr 99.9 4.3E-27 9.3E-32 240.0 14.6 164 243-407 1-219 (226)
38 TIGR00960 3a0501s02 Type II (G 99.9 5.1E-27 1.1E-31 240.6 15.0 164 243-408 1-216 (216)
39 cd03259 ABC_Carb_Solutes_like 99.9 6.4E-27 1.4E-31 239.4 14.8 164 245-410 2-211 (213)
40 TIGR01288 nodI ATP-binding ABC 99.9 7.4E-27 1.6E-31 251.9 15.4 168 242-411 3-216 (303)
41 COG4152 ABC-type uncharacteriz 99.9 4.9E-27 1.1E-31 236.8 12.8 166 243-411 2-211 (300)
42 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 1.2E-26 2.6E-31 238.0 15.0 162 244-407 1-217 (218)
43 cd03226 ABC_cobalt_CbiO_domain 99.9 9.2E-27 2E-31 236.9 13.8 161 246-408 2-204 (205)
44 cd03266 ABC_NatA_sodium_export 99.9 1.3E-26 2.9E-31 237.7 14.9 166 243-410 1-216 (218)
45 cd03265 ABC_DrrA DrrA is the A 99.9 1.6E-26 3.6E-31 237.6 15.1 166 244-411 1-213 (220)
46 TIGR02673 FtsE cell division A 99.9 1.6E-26 3.6E-31 236.4 15.0 163 243-407 1-214 (214)
47 PRK11247 ssuB aliphatic sulfon 99.9 1.9E-26 4.1E-31 243.1 15.6 170 241-411 10-215 (257)
48 cd03293 ABC_NrtD_SsuB_transpor 99.9 1.9E-26 4.2E-31 237.1 15.0 165 245-410 2-214 (220)
49 cd03261 ABC_Org_Solvent_Resist 99.9 2E-26 4.4E-31 239.3 15.0 166 244-411 1-218 (235)
50 cd03301 ABC_MalK_N The N-termi 99.9 2.2E-26 4.8E-31 235.2 14.8 165 245-410 2-211 (213)
51 cd03258 ABC_MetN_methionine_tr 99.9 2.6E-26 5.5E-31 238.1 15.3 168 243-411 1-222 (233)
52 cd03214 ABC_Iron-Siderophores_ 99.9 2.9E-26 6.3E-31 228.9 15.1 154 246-409 2-177 (180)
53 cd03269 ABC_putative_ATPase Th 99.9 2.4E-26 5.2E-31 234.6 14.8 165 244-410 1-208 (210)
54 cd03268 ABC_BcrA_bacitracin_re 99.9 2.2E-26 4.7E-31 234.6 14.4 164 244-409 1-205 (208)
55 PRK11248 tauB taurine transpor 99.9 3.1E-26 6.7E-31 241.2 15.6 168 243-411 1-212 (255)
56 cd03225 ABC_cobalt_CbiO_domain 99.9 2.7E-26 6E-31 234.2 14.3 159 246-406 2-210 (211)
57 cd03218 ABC_YhbG The ABC trans 99.9 3.2E-26 6.9E-31 237.2 14.7 166 244-411 1-214 (232)
58 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 3.9E-26 8.4E-31 237.4 15.4 167 243-411 1-213 (236)
59 COG2884 FtsE Predicted ATPase 99.9 5E-26 1.1E-30 222.2 15.0 167 243-412 1-219 (223)
60 COG1122 CbiO ABC-type cobalt t 99.9 2.4E-26 5.2E-31 238.0 13.4 168 242-411 2-220 (235)
61 PRK10908 cell division protein 99.9 3.9E-26 8.4E-31 235.2 14.9 165 243-409 1-216 (222)
62 cd03296 ABC_CysA_sulfate_impor 99.9 4.4E-26 9.5E-31 237.5 15.4 167 243-411 2-218 (239)
63 cd03298 ABC_ThiQ_thiamine_tran 99.9 4.4E-26 9.5E-31 232.9 14.9 165 245-410 2-209 (211)
64 COG3840 ThiQ ABC-type thiamine 99.9 3.5E-26 7.6E-31 221.6 13.3 160 243-411 1-211 (231)
65 TIGR03522 GldA_ABC_ATP gliding 99.9 4.5E-26 9.8E-31 245.6 15.2 166 243-411 2-213 (301)
66 PRK09536 btuD corrinoid ABC tr 99.9 4.7E-26 1E-30 253.4 15.6 167 243-411 3-220 (402)
67 PRK13638 cbiO cobalt transport 99.9 4.6E-26 9.9E-31 241.9 14.8 167 243-411 1-217 (271)
68 cd03262 ABC_HisP_GlnQ_permease 99.9 5.4E-26 1.2E-30 232.2 14.7 161 245-407 2-212 (213)
69 TIGR02211 LolD_lipo_ex lipopro 99.9 7E-26 1.5E-30 232.9 15.5 163 244-408 2-219 (221)
70 PRK11153 metN DL-methionine tr 99.9 5.3E-26 1.2E-30 249.2 15.5 168 243-411 1-222 (343)
71 PRK09493 glnQ glutamine ABC tr 99.9 6.2E-26 1.4E-30 236.4 15.2 167 243-411 1-217 (240)
72 PRK11831 putative ABC transpor 99.9 7.4E-26 1.6E-30 240.1 15.9 168 242-411 6-225 (269)
73 TIGR02314 ABC_MetN D-methionin 99.9 6E-26 1.3E-30 248.1 15.3 167 243-411 1-222 (343)
74 COG3839 MalK ABC-type sugar tr 99.9 5.7E-26 1.2E-30 244.4 14.8 168 242-410 2-214 (338)
75 TIGR02315 ABC_phnC phosphonate 99.9 1.1E-25 2.4E-30 234.7 16.5 168 243-411 1-227 (243)
76 PRK10771 thiQ thiamine transpo 99.9 8E-26 1.7E-30 234.5 15.3 168 243-411 1-211 (232)
77 COG0411 LivG ABC-type branched 99.9 4.8E-26 1E-30 231.1 13.1 159 243-411 4-231 (250)
78 cd03292 ABC_FtsE_transporter F 99.9 6.9E-26 1.5E-30 231.7 14.3 161 245-407 2-213 (214)
79 PRK10584 putative ABC transpor 99.9 1E-25 2.2E-30 232.9 15.6 167 242-409 5-225 (228)
80 cd03224 ABC_TM1139_LivF_branch 99.9 8.4E-26 1.8E-30 232.3 14.9 166 244-411 1-213 (222)
81 PRK11264 putative amino-acid A 99.9 1E-25 2.3E-30 236.0 15.7 167 243-411 3-225 (250)
82 COG3842 PotA ABC-type spermidi 99.9 7.2E-26 1.6E-30 244.8 14.6 159 242-409 4-216 (352)
83 PRK10895 lipopolysaccharide AB 99.9 1.1E-25 2.3E-30 234.8 15.5 167 243-411 3-218 (241)
84 PRK11629 lolD lipoprotein tran 99.9 1.5E-25 3.1E-30 232.7 15.9 167 242-410 4-225 (233)
85 PRK11650 ugpC glycerol-3-phosp 99.9 9.7E-26 2.1E-30 248.0 15.3 168 243-411 3-216 (356)
86 PRK13647 cbiO cobalt transport 99.9 1.1E-25 2.5E-30 239.3 15.3 167 243-411 4-219 (274)
87 cd03216 ABC_Carb_Monos_I This 99.9 4.7E-26 1E-30 223.9 11.1 154 245-410 2-162 (163)
88 TIGR01188 drrA daunorubicin re 99.9 9.8E-26 2.1E-30 243.1 14.5 158 252-411 2-205 (302)
89 cd03263 ABC_subfamily_A The AB 99.9 1.3E-25 2.8E-30 230.7 14.7 165 244-411 1-213 (220)
90 PRK11231 fecE iron-dicitrate t 99.9 1.6E-25 3.4E-30 235.6 15.6 167 243-411 2-219 (255)
91 PRK11000 maltose/maltodextrin 99.9 1.2E-25 2.5E-30 248.7 15.3 168 243-411 3-215 (369)
92 cd03235 ABC_Metallic_Cations A 99.9 1.2E-25 2.5E-30 230.1 14.2 159 246-406 2-208 (213)
93 PRK13644 cbiO cobalt transport 99.9 1.4E-25 3.1E-30 238.7 15.3 167 243-411 1-216 (274)
94 TIGR03265 PhnT2 putative 2-ami 99.9 1.2E-25 2.6E-30 247.1 15.1 168 243-411 4-216 (353)
95 cd03219 ABC_Mj1267_LivG_branch 99.9 2.1E-25 4.5E-30 231.6 16.0 165 245-411 2-224 (236)
96 PRK11614 livF leucine/isoleuci 99.9 1.2E-25 2.6E-30 233.8 14.2 168 242-411 4-218 (237)
97 COG1135 AbcC ABC-type metal io 99.9 1.2E-25 2.6E-30 234.3 14.0 167 243-411 1-223 (339)
98 PRK11432 fbpC ferric transport 99.9 1.5E-25 3.2E-30 246.0 15.4 169 242-411 5-218 (351)
99 TIGR03740 galliderm_ABC gallid 99.9 1.6E-25 3.6E-30 230.7 14.7 166 244-411 1-205 (223)
100 PRK13548 hmuV hemin importer A 99.9 2E-25 4.4E-30 235.4 15.7 168 243-411 2-222 (258)
101 PRK11300 livG leucine/isoleuci 99.9 3.8E-25 8.3E-30 232.4 17.8 168 242-411 4-235 (255)
102 COG1137 YhbG ABC-type (unclass 99.9 3.4E-26 7.4E-31 224.8 9.0 168 242-411 3-220 (243)
103 cd03257 ABC_NikE_OppD_transpor 99.9 2E-25 4.4E-30 230.3 15.1 166 243-409 1-225 (228)
104 cd03256 ABC_PhnC_transporter A 99.9 3.2E-25 7E-30 230.8 16.6 165 245-411 2-226 (241)
105 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 1.5E-25 3.3E-30 231.4 13.8 165 244-410 23-222 (224)
106 PRK13650 cbiO cobalt transport 99.9 2.7E-25 5.9E-30 237.1 15.8 167 243-411 4-221 (279)
107 PRK14250 phosphate ABC transpo 99.9 3.4E-25 7.4E-30 231.2 15.9 167 243-411 3-213 (241)
108 PRK13643 cbiO cobalt transport 99.9 2.4E-25 5.2E-30 238.6 15.0 167 243-411 1-225 (288)
109 PRK13637 cbiO cobalt transport 99.9 2.9E-25 6.3E-30 237.8 15.5 166 244-411 3-226 (287)
110 PRK10575 iron-hydroxamate tran 99.9 3.5E-25 7.6E-30 234.4 15.9 169 241-411 9-229 (265)
111 TIGR03411 urea_trans_UrtD urea 99.9 3.7E-25 8E-30 230.8 15.8 166 243-411 2-223 (242)
112 PRK09544 znuC high-affinity zi 99.9 3.4E-25 7.3E-30 232.8 15.6 166 242-409 3-199 (251)
113 PRK13641 cbiO cobalt transport 99.9 3E-25 6.5E-30 237.7 15.3 167 243-411 2-226 (287)
114 COG1124 DppF ABC-type dipeptid 99.9 3E-25 6.5E-30 225.2 14.4 169 242-411 2-223 (252)
115 PRK13651 cobalt transporter AT 99.9 3.3E-25 7.2E-30 239.1 15.8 167 243-411 2-246 (305)
116 cd03264 ABC_drug_resistance_li 99.9 2.9E-25 6.3E-30 226.8 14.5 163 244-410 1-209 (211)
117 PRK13635 cbiO cobalt transport 99.9 3.6E-25 7.7E-30 236.2 15.7 168 242-411 4-221 (279)
118 TIGR03410 urea_trans_UrtE urea 99.9 2.7E-25 5.9E-30 230.0 14.4 166 244-411 1-213 (230)
119 cd03295 ABC_OpuCA_Osmoprotecti 99.9 3.5E-25 7.5E-30 231.1 15.1 165 245-411 2-217 (242)
120 PRK09452 potA putrescine/sperm 99.9 3.1E-25 6.8E-30 245.2 15.4 169 242-411 13-226 (375)
121 PRK13640 cbiO cobalt transport 99.9 3.9E-25 8.5E-30 236.2 15.6 169 241-411 3-224 (282)
122 PRK11124 artP arginine transpo 99.9 4.9E-25 1.1E-29 229.9 16.0 167 243-411 2-222 (242)
123 TIGR03258 PhnT 2-aminoethylpho 99.9 3.2E-25 7E-30 244.2 15.3 168 242-411 4-220 (362)
124 PRK13538 cytochrome c biogenes 99.9 4E-25 8.7E-30 224.9 14.7 154 243-398 1-196 (204)
125 cd03260 ABC_PstB_phosphate_tra 99.9 4.2E-25 9.1E-30 228.1 14.9 165 244-411 1-221 (227)
126 PRK10253 iron-enterobactin tra 99.9 4.4E-25 9.5E-30 233.7 15.4 169 241-411 5-225 (265)
127 TIGR01277 thiQ thiamine ABC tr 99.9 5E-25 1.1E-29 225.6 15.1 166 245-411 2-210 (213)
128 PRK13543 cytochrome c biogenes 99.9 4.5E-25 9.7E-30 226.3 14.8 163 240-404 8-211 (214)
129 PRK11144 modC molybdate transp 99.9 4.4E-25 9.6E-30 242.8 15.7 167 243-411 1-210 (352)
130 PRK10247 putative ABC transpor 99.9 5.8E-25 1.2E-29 227.2 15.5 162 242-404 6-211 (225)
131 PRK13652 cbiO cobalt transport 99.9 5.2E-25 1.1E-29 234.7 15.5 167 243-411 3-219 (277)
132 PRK10851 sulfate/thiosulfate t 99.9 5.2E-25 1.1E-29 242.0 16.0 168 243-411 2-218 (353)
133 PRK10619 histidine/lysine/argi 99.9 6.7E-25 1.4E-29 231.1 16.1 168 242-411 4-233 (257)
134 TIGR03608 L_ocin_972_ABC putat 99.9 4.6E-25 1E-29 224.3 14.1 154 246-401 1-204 (206)
135 PRK13634 cbiO cobalt transport 99.9 5.5E-25 1.2E-29 236.0 15.3 166 244-411 3-227 (290)
136 PRK11607 potG putrescine trans 99.9 8.3E-25 1.8E-29 242.1 17.2 170 241-411 17-231 (377)
137 PRK09984 phosphonate/organopho 99.9 1.1E-24 2.3E-29 230.3 17.2 169 242-411 3-234 (262)
138 cd03294 ABC_Pro_Gly_Bertaine T 99.9 4.8E-25 1E-29 233.9 14.5 165 246-411 27-242 (269)
139 cd03297 ABC_ModC_molybdenum_tr 99.9 6.7E-25 1.5E-29 224.7 15.1 161 248-410 5-212 (214)
140 TIGR00972 3a0107s01c2 phosphat 99.9 6.6E-25 1.4E-29 229.7 15.2 166 243-411 1-224 (247)
141 PRK13639 cbiO cobalt transport 99.9 6.4E-25 1.4E-29 233.7 15.4 167 243-411 1-218 (275)
142 PRK13636 cbiO cobalt transport 99.9 7E-25 1.5E-29 234.4 15.6 168 242-411 4-223 (283)
143 PRK15112 antimicrobial peptide 99.9 6.1E-25 1.3E-29 232.9 14.9 169 242-411 3-231 (267)
144 TIGR03873 F420-0_ABC_ATP propo 99.9 7.1E-25 1.5E-29 230.8 15.3 166 244-411 2-218 (256)
145 PLN03073 ABC transporter F fam 99.9 1.8E-24 3.9E-29 256.7 20.3 162 242-409 507-703 (718)
146 cd03245 ABCC_bacteriocin_expor 99.9 7.4E-25 1.6E-29 225.1 14.8 164 244-410 3-218 (220)
147 PRK13631 cbiO cobalt transport 99.9 1.2E-24 2.5E-29 236.4 17.1 170 240-411 18-257 (320)
148 PRK13633 cobalt transporter AT 99.9 7.8E-25 1.7E-29 233.6 15.5 168 242-411 3-225 (280)
149 COG0488 Uup ATPase components 99.9 4.2E-24 9.1E-29 244.0 21.8 166 242-414 2-234 (530)
150 PRK13632 cbiO cobalt transport 99.9 9.3E-25 2E-29 232.0 15.3 168 242-411 6-223 (271)
151 PRK13649 cbiO cobalt transport 99.9 8.7E-25 1.9E-29 233.2 15.1 166 244-411 3-226 (280)
152 TIGR03005 ectoine_ehuA ectoine 99.9 1.2E-24 2.5E-29 228.5 15.7 167 244-411 1-228 (252)
153 TIGR01978 sufC FeS assembly AT 99.9 8.7E-25 1.9E-29 227.8 14.5 166 244-411 1-226 (243)
154 PRK10938 putative molybdenum t 99.9 7.7E-25 1.7E-29 251.2 15.4 167 243-411 3-216 (490)
155 PRK13539 cytochrome c biogenes 99.9 1.1E-24 2.4E-29 222.3 14.8 159 243-404 2-199 (207)
156 PRK13648 cbiO cobalt transport 99.9 1E-24 2.3E-29 231.3 15.1 168 242-411 6-223 (269)
157 TIGR02769 nickel_nikE nickel i 99.9 1.2E-24 2.5E-29 230.4 15.4 168 243-411 2-232 (265)
158 PRK13645 cbiO cobalt transport 99.9 1.1E-24 2.3E-29 233.6 15.3 169 242-411 5-232 (289)
159 TIGR02323 CP_lyasePhnK phospho 99.9 1.4E-24 3.1E-29 227.9 15.9 169 242-411 2-230 (253)
160 cd03230 ABC_DR_subfamily_A Thi 99.9 1.7E-24 3.6E-29 214.8 15.4 152 245-407 2-172 (173)
161 PRK15439 autoinducer 2 ABC tra 99.9 8.6E-25 1.9E-29 251.9 15.4 168 242-411 10-221 (510)
162 cd03246 ABCC_Protease_Secretio 99.9 1.4E-24 3E-29 215.4 14.7 151 245-407 2-172 (173)
163 COG1117 PstB ABC-type phosphat 99.9 1.5E-24 3.2E-29 215.4 14.8 165 243-411 7-229 (253)
164 COG1118 CysA ABC-type sulfate/ 99.9 1.2E-24 2.6E-29 226.4 14.5 166 243-410 2-218 (345)
165 PRK13540 cytochrome c biogenes 99.9 1.3E-24 2.9E-29 220.4 14.5 156 243-400 1-196 (200)
166 PRK13547 hmuV hemin importer A 99.9 1.4E-24 2.9E-29 230.8 15.2 167 243-411 1-236 (272)
167 PRK13646 cbiO cobalt transport 99.9 1.4E-24 2.9E-29 232.5 15.3 166 244-411 3-227 (286)
168 PRK11701 phnK phosphonate C-P 99.9 2.8E-24 6.1E-29 226.5 17.4 169 242-411 5-233 (258)
169 cd03215 ABC_Carb_Monos_II This 99.9 2.7E-24 5.8E-29 215.1 16.3 152 241-408 2-182 (182)
170 PRK10070 glycine betaine trans 99.9 1.5E-24 3.1E-29 241.3 15.7 166 244-410 29-245 (400)
171 PRK10762 D-ribose transporter 99.9 1.1E-24 2.5E-29 250.4 15.4 168 242-411 3-222 (501)
172 TIGR02982 heterocyst_DevA ABC 99.9 1.7E-24 3.8E-29 222.7 15.0 164 244-408 2-219 (220)
173 cd03300 ABC_PotA_N PotA is an 99.9 1.7E-24 3.7E-29 224.7 15.0 165 245-411 2-212 (232)
174 PRK15056 manganese/iron transp 99.9 1.9E-24 4.1E-29 229.7 15.7 167 242-411 5-222 (272)
175 cd03267 ABC_NatA_like Similar 99.9 1.6E-24 3.5E-29 225.5 14.7 159 251-410 29-234 (236)
176 TIGR00968 3a0106s01 sulfate AB 99.9 2E-24 4.3E-29 224.9 15.1 165 245-411 2-212 (237)
177 cd03229 ABC_Class3 This class 99.9 1.3E-24 2.9E-29 216.5 13.1 152 245-406 2-177 (178)
178 cd03248 ABCC_TAP TAP, the Tran 99.9 2.4E-24 5.1E-29 222.4 15.4 164 241-407 9-225 (226)
179 cd03231 ABC_CcmA_heme_exporter 99.9 1.7E-24 3.7E-29 219.8 14.1 157 244-402 1-197 (201)
180 PRK10636 putative ABC transpor 99.9 1.3E-24 2.9E-29 256.2 14.9 164 243-411 1-227 (638)
181 PRK14268 phosphate ABC transpo 99.9 2.6E-24 5.7E-29 226.8 15.3 167 242-411 11-234 (258)
182 PRK14273 phosphate ABC transpo 99.9 2.7E-24 6E-29 226.0 15.4 169 240-411 4-230 (254)
183 PRK14274 phosphate ABC transpo 99.9 6E-24 1.3E-28 224.1 17.9 169 240-411 9-235 (259)
184 PRK09580 sufC cysteine desulfu 99.9 2.4E-24 5.2E-29 225.3 14.7 167 243-411 1-227 (248)
185 PRK13549 xylose transporter AT 99.9 1.9E-24 4.2E-29 248.8 15.3 168 242-411 4-224 (506)
186 PRK10419 nikE nickel transport 99.9 3.1E-24 6.7E-29 227.6 15.7 168 243-411 3-233 (268)
187 PRK14248 phosphate ABC transpo 99.9 3E-24 6.4E-29 227.6 15.5 169 240-411 18-244 (268)
188 TIGR02142 modC_ABC molybdenum 99.9 2.2E-24 4.8E-29 237.5 14.9 163 248-411 4-213 (354)
189 PRK11022 dppD dipeptide transp 99.9 4.2E-24 9E-29 232.7 16.8 167 243-411 3-235 (326)
190 PRK10418 nikD nickel transport 99.9 3.5E-24 7.6E-29 225.3 15.5 168 243-411 4-222 (254)
191 PRK09700 D-allose transporter 99.9 3.8E-24 8.1E-29 246.7 17.2 168 242-411 4-226 (510)
192 cd03254 ABCC_Glucan_exporter_l 99.9 3.5E-24 7.6E-29 221.4 15.2 166 243-411 2-218 (229)
193 COG4604 CeuD ABC-type enteroch 99.9 9.3E-25 2E-29 214.1 10.1 167 243-411 1-217 (252)
194 PRK13541 cytochrome c biogenes 99.9 2.9E-24 6.4E-29 217.1 14.0 155 243-399 1-191 (195)
195 PRK14247 phosphate ABC transpo 99.9 3.6E-24 7.7E-29 224.5 15.0 166 243-411 3-226 (250)
196 PRK14242 phosphate transporter 99.9 3.9E-24 8.4E-29 224.6 15.3 167 242-411 5-229 (253)
197 PRK14245 phosphate ABC transpo 99.9 8.5E-24 1.9E-28 221.7 17.8 167 242-411 2-226 (250)
198 PRK13642 cbiO cobalt transport 99.9 4.2E-24 9.2E-29 227.6 15.6 167 243-411 4-221 (277)
199 cd03251 ABCC_MsbA MsbA is an e 99.9 2.9E-24 6.3E-29 222.8 14.0 164 245-411 2-217 (234)
200 PRK10744 pstB phosphate transp 99.9 4.8E-24 1E-28 225.1 15.9 169 240-411 10-236 (260)
201 cd03252 ABCC_Hemolysin The ABC 99.9 2.9E-24 6.2E-29 223.3 14.0 164 245-411 2-217 (237)
202 PRK13545 tagH teichoic acids e 99.9 3.2E-24 6.9E-29 242.2 15.2 168 242-411 20-224 (549)
203 PRK14275 phosphate ABC transpo 99.9 9.3E-24 2E-28 226.1 18.1 169 240-411 36-262 (286)
204 cd03247 ABCC_cytochrome_bd The 99.9 4.9E-24 1.1E-28 212.4 14.8 155 245-410 2-176 (178)
205 PRK14267 phosphate ABC transpo 99.9 6.6E-24 1.4E-28 222.9 16.4 167 242-411 3-229 (253)
206 COG4586 ABC-type uncharacteriz 99.9 2.9E-24 6.2E-29 220.0 12.9 144 259-411 42-238 (325)
207 TIGR01189 ccmA heme ABC export 99.9 4.3E-24 9.2E-29 216.3 14.0 147 244-392 1-188 (198)
208 cd03228 ABCC_MRP_Like The MRP 99.9 5.9E-24 1.3E-28 210.5 14.7 149 245-406 2-170 (171)
209 cd03217 ABC_FeS_Assembly ABC-t 99.9 2.2E-24 4.8E-29 219.0 11.9 157 245-411 2-186 (200)
210 PRK14235 phosphate transporter 99.9 6.2E-24 1.3E-28 225.2 15.8 169 240-411 16-243 (267)
211 cd03299 ABC_ModC_like Archeal 99.9 5.7E-24 1.2E-28 221.2 15.0 166 245-411 2-211 (235)
212 PRK11308 dppF dipeptide transp 99.9 6E-24 1.3E-28 231.5 15.8 169 242-411 4-236 (327)
213 PRK11288 araG L-arabinose tran 99.9 4.3E-24 9.4E-29 245.7 15.3 166 243-410 4-220 (501)
214 PRK15079 oligopeptide ABC tran 99.9 6.7E-24 1.5E-28 231.4 16.0 168 242-411 7-243 (331)
215 PRK14256 phosphate ABC transpo 99.9 1.1E-23 2.4E-28 221.1 17.1 167 242-411 3-228 (252)
216 cd03250 ABCC_MRP_domain1 Domai 99.9 6.2E-24 1.3E-28 216.0 14.6 161 244-406 1-203 (204)
217 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 4.7E-24 1E-28 221.9 14.0 164 245-411 2-218 (238)
218 COG4559 ABC-type hemin transpo 99.9 2.7E-24 5.9E-29 213.2 11.4 167 243-411 1-222 (259)
219 cd03232 ABC_PDR_domain2 The pl 99.9 1E-23 2.2E-28 212.7 15.9 158 243-410 3-190 (192)
220 PRK14269 phosphate ABC transpo 99.9 7.2E-24 1.6E-28 221.9 15.3 166 243-411 2-222 (246)
221 PRK14262 phosphate ABC transpo 99.9 1.3E-23 2.8E-28 220.3 17.1 166 243-411 3-226 (250)
222 CHL00131 ycf16 sulfate ABC tra 99.9 8.9E-24 1.9E-28 221.7 15.9 168 242-411 6-233 (252)
223 TIGR03269 met_CoM_red_A2 methy 99.9 8.3E-24 1.8E-28 244.4 17.1 166 244-410 1-249 (520)
224 PRK14240 phosphate transporter 99.9 1.4E-23 3.1E-28 220.0 17.3 167 242-411 2-226 (250)
225 cd03213 ABCG_EPDR ABCG transpo 99.9 9.7E-24 2.1E-28 213.3 15.3 158 243-410 3-192 (194)
226 cd03244 ABCC_MRP_domain2 Domai 99.9 7.7E-24 1.7E-28 217.7 14.8 166 243-411 2-218 (221)
227 TIGR02324 CP_lyasePhnL phospho 99.9 9.8E-24 2.1E-28 217.5 15.6 159 243-403 1-222 (224)
228 cd03223 ABCD_peroxisomal_ALDP 99.9 1E-23 2.2E-28 208.0 14.7 148 245-406 2-163 (166)
229 TIGR01186 proV glycine betaine 99.9 6.2E-24 1.3E-28 233.7 14.6 158 252-410 2-210 (363)
230 PRK14255 phosphate ABC transpo 99.9 1.5E-23 3.3E-28 220.0 16.9 168 241-411 3-228 (252)
231 PRK15093 antimicrobial peptide 99.9 1.7E-23 3.6E-28 228.4 17.6 167 243-411 3-240 (330)
232 cd03253 ABCC_ATM1_transporter 99.9 7.4E-24 1.6E-28 220.0 14.1 164 245-411 2-216 (236)
233 PRK14270 phosphate ABC transpo 99.9 1.2E-23 2.7E-28 220.6 15.8 167 242-411 3-227 (251)
234 PRK14241 phosphate transporter 99.9 1.1E-23 2.4E-28 222.0 15.4 166 243-411 4-234 (258)
235 PRK13549 xylose transporter AT 99.9 1E-23 2.3E-28 242.8 16.5 170 240-411 256-486 (506)
236 PRK14239 phosphate transporter 99.9 1.2E-23 2.7E-28 220.6 15.6 167 242-411 4-228 (252)
237 TIGR01184 ntrCD nitrate transp 99.9 8E-24 1.7E-28 219.4 14.0 152 259-411 3-196 (230)
238 KOG0927 Predicted transporter 99.9 1.1E-23 2.5E-28 232.0 15.8 160 242-414 388-590 (614)
239 PRK14237 phosphate transporter 99.9 1.3E-23 2.9E-28 222.6 15.8 168 241-411 18-243 (267)
240 PRK15064 ABC transporter ATP-b 99.9 8.4E-24 1.8E-28 244.9 15.1 161 243-409 1-231 (530)
241 PRK14251 phosphate ABC transpo 99.9 1.3E-23 2.8E-28 220.4 15.1 166 243-411 4-227 (251)
242 PRK14272 phosphate ABC transpo 99.9 1.4E-23 3E-28 220.2 15.4 166 243-411 4-228 (252)
243 TIGR02633 xylG D-xylose ABC tr 99.9 1.4E-23 3E-28 241.4 16.7 167 243-411 1-222 (500)
244 PRK14271 phosphate ABC transpo 99.9 1.9E-23 4.2E-28 222.5 16.6 169 240-411 18-243 (276)
245 COG0410 LivF ABC-type branched 99.9 1.4E-23 3.1E-28 211.7 14.6 168 242-411 2-218 (237)
246 PRK15064 ABC transporter ATP-b 99.9 9E-24 1.9E-28 244.6 14.9 164 241-409 317-514 (530)
247 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 7.1E-24 1.5E-28 204.4 11.5 139 245-407 2-144 (144)
248 PRK11147 ABC transporter ATPas 99.9 8.5E-24 1.9E-28 249.6 14.6 162 243-411 3-234 (635)
249 cd03234 ABCG_White The White s 99.9 1.4E-23 3E-28 216.9 14.1 165 244-410 4-224 (226)
250 PRK14265 phosphate ABC transpo 99.9 4.6E-23 9.9E-28 219.4 18.4 161 241-404 18-234 (274)
251 PRK14254 phosphate ABC transpo 99.9 2.1E-23 4.5E-28 223.3 15.8 169 240-411 36-261 (285)
252 PRK14259 phosphate ABC transpo 99.9 2.1E-23 4.5E-28 221.4 15.6 163 240-405 10-228 (269)
253 PRK10938 putative molybdenum t 99.9 1.6E-23 3.4E-28 240.4 15.9 170 241-412 258-485 (490)
254 PRK14249 phosphate ABC transpo 99.9 2.2E-23 4.8E-28 218.7 15.6 167 242-411 3-227 (251)
255 PRK15134 microcin C ABC transp 99.9 2E-23 4.3E-28 241.7 16.7 168 242-411 4-238 (529)
256 PRK14253 phosphate ABC transpo 99.9 2E-23 4.4E-28 218.7 15.2 166 243-411 3-225 (249)
257 PRK14238 phosphate transporter 99.9 1.9E-23 4.1E-28 221.9 15.1 169 240-411 21-247 (271)
258 PRK10982 galactose/methyl gala 99.9 1.1E-23 2.4E-28 241.7 14.3 162 247-410 2-214 (491)
259 PRK13546 teichoic acids export 99.9 2E-23 4.3E-28 221.0 15.0 151 259-411 42-224 (264)
260 cd03288 ABCC_SUR2 The SUR doma 99.9 2.4E-23 5.2E-28 219.4 15.5 167 242-411 18-235 (257)
261 PRK14246 phosphate ABC transpo 99.9 2.7E-23 5.8E-28 219.2 15.8 167 242-411 9-233 (257)
262 cd03233 ABC_PDR_domain1 The pl 99.9 3.7E-23 8E-28 210.4 16.1 164 243-410 3-200 (202)
263 PRK14261 phosphate ABC transpo 99.9 4.6E-23 1E-27 216.6 17.2 167 242-411 5-229 (253)
264 cd03222 ABC_RNaseL_inhibitor T 99.9 6.1E-24 1.3E-28 211.6 9.7 143 247-408 4-150 (177)
265 TIGR02633 xylG D-xylose ABC tr 99.9 1.6E-23 3.4E-28 241.0 14.5 169 241-411 255-484 (500)
266 PRK09473 oppD oligopeptide tra 99.9 3.7E-23 8E-28 225.6 16.5 169 241-411 10-243 (330)
267 PRK14258 phosphate ABC transpo 99.9 3.9E-23 8.5E-28 218.3 16.1 169 242-411 6-237 (261)
268 PRK11819 putative ABC transpor 99.9 2.4E-23 5.1E-28 242.4 15.8 162 242-409 5-239 (556)
269 cd03238 ABC_UvrA The excision 99.9 2.5E-23 5.4E-28 207.0 13.7 146 259-410 13-168 (176)
270 cd03369 ABCC_NFT1 Domain 2 of 99.9 3.5E-23 7.6E-28 210.9 14.7 162 242-410 5-203 (207)
271 PRK13409 putative ATPase RIL; 99.9 2.7E-23 5.8E-28 242.4 15.6 164 241-405 338-529 (590)
272 PRK14236 phosphate transporter 99.9 4.3E-23 9.3E-28 219.3 15.8 168 241-411 23-248 (272)
273 TIGR03269 met_CoM_red_A2 methy 99.9 3.7E-23 8.1E-28 239.0 16.4 170 241-411 277-509 (520)
274 PRK09700 D-allose transporter 99.9 5.1E-23 1.1E-27 237.3 16.9 167 241-410 263-489 (510)
275 PRK14244 phosphate ABC transpo 99.9 4.5E-23 9.7E-28 216.4 15.0 164 245-411 7-229 (251)
276 TIGR01166 cbiO cobalt transpor 99.9 2.9E-23 6.3E-28 208.7 12.7 133 259-393 10-189 (190)
277 PRK10261 glutathione transport 99.9 5.5E-23 1.2E-27 242.1 17.1 168 241-410 10-249 (623)
278 PRK15134 microcin C ABC transp 99.9 3.4E-23 7.4E-28 239.8 15.1 170 240-411 272-507 (529)
279 cd03290 ABCC_SUR1_N The SUR do 99.9 5E-23 1.1E-27 211.5 14.6 161 246-407 3-218 (218)
280 PRK03695 vitamin B12-transport 99.9 3.9E-23 8.4E-28 216.8 13.8 162 245-411 2-214 (248)
281 PRK14264 phosphate ABC transpo 99.9 1E-22 2.2E-27 220.0 17.5 169 240-411 42-281 (305)
282 TIGR03415 ABC_choXWV_ATP choli 99.9 4E-23 8.6E-28 228.4 14.6 164 247-411 28-246 (382)
283 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 3.3E-23 7.1E-28 241.0 14.6 164 241-409 320-520 (552)
284 COG1119 ModF ABC-type molybden 99.9 5.4E-23 1.2E-27 209.0 14.2 159 242-410 30-253 (257)
285 cd03289 ABCC_CFTR2 The CFTR su 99.9 1E-22 2.2E-27 216.6 17.1 166 243-411 2-217 (275)
286 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 4.8E-23 1E-27 239.7 15.6 163 242-410 3-238 (552)
287 PRK10261 glutathione transport 99.9 5.5E-23 1.2E-27 242.1 16.3 169 241-411 311-545 (623)
288 PRK14243 phosphate transporter 99.9 6E-23 1.3E-27 217.3 15.0 160 242-404 9-224 (264)
289 PRK14252 phosphate ABC transpo 99.9 1.3E-22 2.9E-27 214.7 17.6 168 241-411 14-241 (265)
290 PRK14260 phosphate ABC transpo 99.9 1.6E-22 3.4E-27 213.4 17.9 167 242-411 6-235 (259)
291 PRK14266 phosphate ABC transpo 99.9 1.7E-22 3.6E-27 211.9 17.8 166 243-411 3-226 (250)
292 PRK11819 putative ABC transpor 99.9 5E-23 1.1E-27 239.6 15.1 163 242-409 323-522 (556)
293 cd00267 ABC_ATPase ABC (ATP-bi 99.9 8.6E-23 1.9E-27 199.1 13.3 148 246-406 2-156 (157)
294 cd03237 ABC_RNaseL_inhibitor_d 99.9 9.2E-23 2E-27 213.8 14.2 142 263-405 21-191 (246)
295 TIGR02770 nickel_nikD nickel i 99.9 9.4E-23 2E-27 211.3 13.9 152 259-411 4-207 (230)
296 smart00533 MUTSd DNA-binding d 99.9 2E-22 4.3E-27 217.0 16.1 185 24-218 122-306 (308)
297 PRK10982 galactose/methyl gala 99.9 1.1E-22 2.3E-27 233.6 14.5 167 241-410 248-471 (491)
298 COG4525 TauB ABC-type taurine 99.9 9.1E-23 2E-27 199.8 11.2 154 243-405 3-208 (259)
299 COG1129 MglA ABC-type sugar tr 99.9 2.6E-22 5.5E-27 224.6 16.4 159 243-411 8-226 (500)
300 TIGR01257 rim_protein retinal- 99.9 1.5E-22 3.2E-27 257.4 15.7 169 241-411 1935-2151(2272)
301 PRK15439 autoinducer 2 ABC tra 99.9 1.4E-22 3.1E-27 233.5 14.0 164 241-410 266-483 (510)
302 PRK14257 phosphate ABC transpo 99.9 5E-22 1.1E-26 216.6 17.2 168 241-411 78-305 (329)
303 cd03291 ABCC_CFTR1 The CFTR su 99.9 4.5E-22 9.9E-27 212.4 16.4 169 240-411 36-239 (282)
304 PLN03073 ABC transporter F fam 99.9 2.5E-22 5.5E-27 238.4 15.2 165 242-411 176-422 (718)
305 COG4181 Predicted ABC-type tra 99.9 3.2E-22 7E-27 192.3 12.9 167 243-410 6-226 (228)
306 cd03236 ABC_RNaseL_inhibitor_d 99.9 2.6E-22 5.7E-27 211.4 13.4 154 247-404 4-213 (255)
307 PRK11288 araG L-arabinose tran 99.9 3.4E-22 7.3E-27 230.0 15.4 165 242-411 256-477 (501)
308 cd03227 ABC_Class2 ABC-type Cl 99.9 2.1E-22 4.5E-27 197.9 11.5 129 257-404 11-154 (162)
309 PRK14263 phosphate ABC transpo 99.9 6E-22 1.3E-26 209.4 15.6 165 243-410 8-236 (261)
310 COG4598 HisP ABC-type histidin 99.9 3.7E-22 8E-27 193.1 11.9 166 243-410 6-232 (256)
311 PRK15177 Vi polysaccharide exp 99.9 4.9E-22 1.1E-26 203.9 13.7 148 259-411 5-184 (213)
312 PRK10762 D-ribose transporter 99.9 3.9E-22 8.4E-27 229.5 14.3 164 242-411 256-476 (501)
313 COG2274 SunT ABC-type bacterio 99.9 5.4E-22 1.2E-26 233.6 14.8 160 241-411 469-688 (709)
314 PRK10522 multidrug transporter 99.9 7.7E-22 1.7E-26 229.4 15.5 169 242-411 321-530 (547)
315 TIGR01257 rim_protein retinal- 99.9 6.4E-22 1.4E-26 251.6 15.5 168 241-411 926-1141(2272)
316 COG1134 TagH ABC-type polysacc 99.9 6.7E-22 1.5E-26 201.3 12.1 143 259-411 45-228 (249)
317 COG1123 ATPase components of v 99.9 1.2E-21 2.6E-26 220.5 15.0 168 243-411 5-236 (539)
318 TIGR01194 cyc_pep_trnsptr cycl 99.9 1.2E-21 2.5E-26 228.2 15.3 168 242-410 336-550 (555)
319 TIGR03771 anch_rpt_ABC anchore 99.9 9.6E-22 2.1E-26 203.0 12.7 147 262-411 1-193 (223)
320 COG4619 ABC-type uncharacteriz 99.9 9.4E-22 2E-26 188.6 11.1 154 254-408 14-212 (223)
321 TIGR01842 type_I_sec_PrtD type 99.9 1.5E-21 3.2E-26 226.9 15.0 168 242-411 315-534 (544)
322 COG3845 ABC-type uncharacteriz 99.9 1.5E-21 3.2E-26 214.6 14.1 157 243-409 4-219 (501)
323 COG4161 ArtP ABC-type arginine 99.9 1.5E-21 3.2E-26 185.9 12.1 165 244-411 3-222 (242)
324 PRK13657 cyclic beta-1,2-gluca 99.9 1.8E-21 4E-26 228.2 15.1 166 242-410 333-549 (588)
325 COG1123 ATPase components of v 99.9 2E-21 4.2E-26 218.9 14.5 171 240-411 277-511 (539)
326 COG0396 sufC Cysteine desulfur 99.9 3.8E-21 8.3E-26 193.5 14.7 168 242-411 2-226 (251)
327 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 2.1E-21 4.5E-26 231.6 15.2 165 242-411 450-665 (686)
328 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 1.5E-21 3.3E-26 233.6 13.6 165 242-411 476-692 (710)
329 PRK11160 cysteine/glutathione 99.9 2.5E-21 5.5E-26 226.3 15.1 167 242-411 337-554 (574)
330 COG4107 PhnK ABC-type phosphon 99.9 3.6E-21 7.9E-26 185.3 13.4 165 244-410 7-232 (258)
331 PRK11174 cysteine/glutathione 99.9 2.6E-21 5.7E-26 226.8 15.2 166 242-410 348-563 (588)
332 PRK10535 macrolide transporter 99.9 3E-21 6.6E-26 228.3 15.8 167 243-411 4-224 (648)
333 COG0444 DppD ABC-type dipeptid 99.9 3.8E-21 8.3E-26 203.2 14.5 165 244-410 2-234 (316)
334 COG4133 CcmA ABC-type transpor 99.9 4E-21 8.7E-26 187.9 13.5 140 243-392 2-191 (209)
335 PRK13409 putative ATPase RIL; 99.9 2.7E-21 5.9E-26 225.6 14.6 155 247-405 77-286 (590)
336 COG4987 CydC ABC-type transpor 99.9 2.1E-21 4.6E-26 214.8 12.8 158 243-411 336-553 (573)
337 PRK11176 lipid transporter ATP 99.9 2.3E-21 5.1E-26 226.9 14.0 166 242-410 340-558 (582)
338 TIGR01192 chvA glucan exporter 99.9 3.4E-21 7.3E-26 225.7 14.7 166 242-410 333-549 (585)
339 TIGR03375 type_I_sec_LssB type 99.9 3.4E-21 7.4E-26 230.0 15.0 166 242-410 462-679 (694)
340 TIGR02203 MsbA_lipidA lipid A 99.9 3.1E-21 6.8E-26 225.3 14.1 166 242-410 329-547 (571)
341 KOG0062 ATPase component of AB 99.9 1.2E-21 2.7E-26 215.0 9.9 164 243-414 80-279 (582)
342 PRK10790 putative multidrug tr 99.8 4.1E-21 8.8E-26 225.4 14.5 165 242-410 339-554 (592)
343 COG4175 ProV ABC-type proline/ 99.8 6.1E-21 1.3E-25 199.1 13.8 150 259-410 46-245 (386)
344 KOG0057 Mitochondrial Fe/S clu 99.8 8.3E-21 1.8E-25 210.3 15.4 167 241-411 349-566 (591)
345 COG4608 AppF ABC-type oligopep 99.8 6.5E-21 1.4E-25 197.6 13.3 158 243-410 4-190 (268)
346 PLN03211 ABC transporter G-25; 99.8 5E-21 1.1E-25 226.0 13.6 164 246-411 71-288 (659)
347 COG4674 Uncharacterized ABC-ty 99.8 2.9E-21 6.4E-26 189.3 9.4 165 243-410 5-226 (249)
348 TIGR00954 3a01203 Peroxysomal 99.8 8.6E-21 1.9E-25 224.7 15.3 159 241-404 449-652 (659)
349 PRK10789 putative multidrug tr 99.8 8.3E-21 1.8E-25 221.8 15.0 167 242-411 312-530 (569)
350 TIGR01193 bacteriocin_ABC ABC- 99.8 6.4E-21 1.4E-25 228.2 14.0 166 242-411 472-689 (708)
351 TIGR02204 MsbA_rel ABC transpo 99.8 7.3E-21 1.6E-25 222.4 13.9 167 242-411 336-555 (576)
352 cd03270 ABC_UvrA_I The excisio 99.8 1.4E-20 3E-25 194.9 13.9 150 259-410 13-224 (226)
353 COG4988 CydD ABC-type transpor 99.8 1.4E-20 3E-25 211.3 14.4 166 243-411 320-535 (559)
354 TIGR00958 3a01208 Conjugate Tr 99.8 8.6E-21 1.9E-25 226.9 13.5 165 242-411 477-694 (711)
355 TIGR01846 type_I_sec_HlyB type 99.8 1.2E-20 2.6E-25 225.3 14.7 167 242-411 454-672 (694)
356 TIGR02857 CydD thiol reductant 99.8 1.5E-20 3.2E-25 217.8 14.4 158 242-402 319-528 (529)
357 COG4148 ModC ABC-type molybdat 99.8 1.3E-20 2.9E-25 193.6 10.7 162 248-411 5-210 (352)
358 TIGR01187 potA spermidine/putr 99.8 1.3E-20 2.9E-25 205.2 10.9 139 273-411 1-182 (325)
359 KOG0927 Predicted transporter 99.8 4.7E-20 1E-24 203.6 14.8 157 244-413 76-302 (614)
360 COG1101 PhnK ABC-type uncharac 99.8 3.8E-20 8.2E-25 184.2 12.2 160 244-412 2-231 (263)
361 KOG0062 ATPase component of AB 99.8 1.7E-20 3.8E-25 206.0 9.6 279 63-410 234-559 (582)
362 TIGR02868 CydC thiol reductant 99.8 8.2E-20 1.8E-24 211.6 14.2 147 242-391 333-529 (529)
363 KOG0066 eIF2-interacting prote 99.8 5.4E-20 1.2E-24 197.3 9.6 153 243-408 586-779 (807)
364 COG1132 MdlB ABC-type multidru 99.8 1.9E-19 4.1E-24 210.3 14.3 166 242-411 327-544 (567)
365 COG4136 ABC-type uncharacteriz 99.8 1.5E-19 3.3E-24 170.5 10.4 151 242-394 1-198 (213)
366 TIGR00956 3a01205 Pleiotropic 99.8 2.4E-19 5.2E-24 226.9 14.8 170 240-411 756-985 (1394)
367 PTZ00265 multidrug resistance 99.8 2.2E-19 4.9E-24 227.5 14.3 163 243-407 382-656 (1466)
368 COG4618 ArpD ABC-type protease 99.8 7.2E-19 1.6E-23 193.3 15.5 173 235-411 326-552 (580)
369 cd03278 ABC_SMC_barmotin Barmo 99.8 4.8E-19 1E-23 179.6 12.5 137 259-403 15-188 (197)
370 KOG0055 Multidrug/pheromone ex 99.8 3.6E-19 7.8E-24 213.8 13.1 160 240-410 347-567 (1228)
371 PTZ00265 multidrug resistance 99.8 4.5E-19 9.9E-24 224.8 14.9 166 242-409 1164-1441(1466)
372 KOG0058 Peptide exporter, ABC 99.8 4E-19 8.6E-24 203.2 12.4 161 240-411 462-683 (716)
373 KOG0059 Lipid exporter ABCA1 a 99.8 4E-19 8.6E-24 216.3 12.9 167 242-411 563-779 (885)
374 cd03279 ABC_sbcCD SbcCD and ot 99.8 2.2E-18 4.8E-23 176.8 14.5 159 244-407 6-210 (213)
375 COG4778 PhnL ABC-type phosphon 99.8 1.6E-18 3.5E-23 166.7 11.9 152 243-404 4-226 (235)
376 PLN03140 ABC transporter G fam 99.8 2E-18 4.3E-23 218.3 15.6 167 243-411 867-1102(1470)
377 TIGR00955 3a01204 The Eye Pigm 99.8 1.2E-18 2.6E-23 205.3 12.7 152 259-412 43-249 (617)
378 TIGR00957 MRP_assoc_pro multi 99.8 1.8E-18 3.9E-23 221.1 14.9 168 242-410 635-841 (1522)
379 PLN03232 ABC transporter C fam 99.8 2E-18 4.3E-23 220.4 14.7 165 242-410 1233-1449(1495)
380 PLN03130 ABC transporter C fam 99.8 2.3E-18 4.9E-23 220.4 14.6 166 241-410 1235-1452(1622)
381 cd03271 ABC_UvrA_II The excisi 99.8 7.2E-18 1.6E-22 177.7 15.7 95 316-411 153-258 (261)
382 PLN03232 ABC transporter C fam 99.8 4.4E-18 9.4E-23 217.3 16.7 167 242-410 613-819 (1495)
383 PLN03130 ABC transporter C fam 99.8 3E-18 6.6E-23 219.2 14.7 167 242-410 613-819 (1622)
384 PTZ00243 ABC transporter; Prov 99.8 4.3E-18 9.3E-23 217.5 14.6 166 241-410 1306-1524(1560)
385 PTZ00243 ABC transporter; Prov 99.7 4.5E-18 9.8E-23 217.2 14.5 158 252-411 669-862 (1560)
386 TIGR01271 CFTR_protein cystic 99.7 5.3E-18 1.2E-22 216.3 14.9 165 243-410 428-627 (1490)
387 TIGR01271 CFTR_protein cystic 99.7 1.1E-17 2.3E-22 213.5 16.6 166 241-410 1215-1431(1490)
388 TIGR00957 MRP_assoc_pro multi 99.7 7E-18 1.5E-22 215.7 13.6 166 241-410 1282-1499(1522)
389 COG4615 PvdE ABC-type sideroph 99.7 9.9E-18 2.1E-22 179.1 11.9 159 243-410 322-528 (546)
390 cd03272 ABC_SMC3_euk Eukaryoti 99.7 2.2E-17 4.8E-22 172.3 13.5 77 325-403 152-233 (243)
391 COG4172 ABC-type uncharacteriz 99.7 3.1E-17 6.8E-22 175.9 14.0 165 243-410 6-238 (534)
392 COG4172 ABC-type uncharacteriz 99.7 4.8E-17 1E-21 174.5 14.2 169 241-411 274-508 (534)
393 PRK04946 hypothetical protein; 99.7 8E-18 1.7E-22 166.6 7.7 75 678-752 95-173 (181)
394 cd03274 ABC_SMC4_euk Eukaryoti 99.7 1.4E-17 3E-22 170.9 8.5 149 245-403 7-202 (212)
395 cd03240 ABC_Rad50 The catalyti 99.7 2.1E-17 4.5E-22 168.6 9.7 142 260-405 16-197 (204)
396 COG4138 BtuD ABC-type cobalami 99.7 9.2E-18 2E-22 162.1 6.3 152 258-411 16-213 (248)
397 PLN03140 ABC transporter G fam 99.7 2.1E-17 4.5E-22 209.1 11.0 151 259-411 183-419 (1470)
398 COG4167 SapF ABC-type antimicr 99.7 7.6E-17 1.6E-21 156.8 11.3 167 244-411 5-231 (267)
399 TIGR00956 3a01205 Pleiotropic 99.7 4.2E-17 9.1E-22 206.6 12.4 151 259-411 79-292 (1394)
400 cd03275 ABC_SMC1_euk Eukaryoti 99.7 1.4E-16 3.1E-21 167.0 13.6 77 327-404 151-232 (247)
401 cd03273 ABC_SMC2_euk Eukaryoti 99.7 1.9E-16 4E-21 166.5 14.1 79 323-403 158-241 (251)
402 KOG0056 Heavy metal exporter H 99.7 8E-17 1.7E-21 175.4 11.0 169 238-411 532-753 (790)
403 cd03276 ABC_SMC6_euk Eukaryoti 99.7 4.1E-16 8.8E-21 158.4 14.1 143 259-403 14-188 (198)
404 KOG0061 Transporter, ABC super 99.7 2.6E-16 5.6E-21 184.5 14.1 152 259-412 48-253 (613)
405 KOG0055 Multidrug/pheromone ex 99.7 1.6E-16 3.5E-21 191.2 11.7 167 241-411 985-1205(1228)
406 COG1245 Predicted ATPase, RNas 99.7 3.1E-16 6.8E-21 170.4 12.7 155 241-404 340-530 (591)
407 PF00005 ABC_tran: ABC transpo 99.7 1.3E-16 2.7E-21 151.4 7.4 100 259-359 3-137 (137)
408 TIGR00630 uvra excinuclease AB 99.6 2.5E-15 5.4E-20 181.7 16.7 95 316-411 812-917 (924)
409 KOG0066 eIF2-interacting prote 99.6 1.3E-15 2.8E-20 163.9 11.8 164 244-412 265-491 (807)
410 PRK00349 uvrA excinuclease ABC 99.6 5.3E-15 1.2E-19 179.2 16.5 95 316-411 814-919 (943)
411 KOG2355 Predicted ABC-type tra 99.6 3.1E-15 6.7E-20 148.1 10.5 168 240-411 10-229 (291)
412 PRK00635 excinuclease ABC subu 99.6 1.1E-14 2.4E-19 183.4 15.8 88 316-404 793-885 (1809)
413 COG1245 Predicted ATPase, RNas 99.6 1.4E-14 3E-19 157.7 13.6 125 265-399 98-282 (591)
414 cd03239 ABC_SMC_head The struc 99.6 1.6E-14 3.5E-19 144.2 13.1 130 269-404 23-171 (178)
415 COG4178 ABC-type uncharacteriz 99.6 1.1E-14 2.4E-19 166.5 12.9 160 241-403 390-586 (604)
416 cd03277 ABC_SMC5_euk Eukaryoti 99.6 1.5E-14 3.3E-19 148.6 10.7 81 325-406 120-210 (213)
417 PF01713 Smr: Smr domain; Int 99.5 1.1E-14 2.4E-19 127.2 7.0 72 681-752 1-83 (83)
418 KOG0054 Multidrug resistance-a 99.5 9.4E-14 2E-18 171.1 13.9 168 241-410 516-722 (1381)
419 smart00463 SMR Small MutS-rela 99.5 1.1E-13 2.3E-18 120.1 7.1 74 679-752 2-80 (80)
420 COG2401 ABC-type ATPase fused 99.5 2.1E-13 4.6E-18 146.9 10.9 146 259-406 401-585 (593)
421 KOG0065 Pleiotropic drug resis 99.5 8E-14 1.7E-18 168.2 8.4 151 259-411 809-1013(1391)
422 KOG0060 Long-chain acyl-CoA tr 99.5 5.4E-13 1.2E-17 149.2 14.2 158 242-404 432-640 (659)
423 COG1129 MglA ABC-type sugar tr 99.4 4.7E-13 1E-17 150.6 13.3 166 241-410 261-481 (500)
424 COG5265 ATM1 ABC-type transpor 99.4 2E-13 4.3E-18 147.9 9.3 167 241-411 260-478 (497)
425 cd03241 ABC_RecN RecN ATPase i 99.4 5.3E-13 1.2E-17 142.4 10.9 75 330-406 169-248 (276)
426 KOG0054 Multidrug resistance-a 99.4 1E-12 2.2E-17 162.1 13.8 168 241-411 1136-1355(1381)
427 KOG0064 Peroxisomal long-chain 99.4 9.5E-12 2.1E-16 137.6 16.7 155 244-403 482-681 (728)
428 PRK00635 excinuclease ABC subu 99.3 1.2E-11 2.7E-16 156.4 15.4 89 316-405 1683-1776(1809)
429 COG0178 UvrA Excinuclease ATPa 99.3 4.7E-11 1E-15 138.3 14.5 78 325-403 816-897 (935)
430 COG2840 Uncharacterized protei 99.3 7E-12 1.5E-16 123.9 6.7 73 679-751 97-176 (184)
431 PF02463 SMC_N: RecF/RecN/SMC 99.2 1.6E-10 3.4E-15 118.9 12.6 71 331-403 136-211 (220)
432 cd03242 ABC_RecF RecF is a rec 99.2 5.5E-11 1.2E-15 126.6 9.4 75 329-408 181-269 (270)
433 COG4170 SapD ABC-type antimicr 99.2 6.4E-11 1.4E-15 118.0 9.1 146 259-406 25-235 (330)
434 TIGR00630 uvra excinuclease AB 99.1 2.4E-10 5.2E-15 138.9 9.9 95 316-411 471-575 (924)
435 KOG0063 RNAse L inhibitor, ABC 99.1 3.4E-10 7.4E-15 122.9 9.3 137 259-404 354-531 (592)
436 PRK00349 uvrA excinuclease ABC 99.0 3.5E-10 7.7E-15 137.7 9.3 95 316-411 473-577 (943)
437 COG3845 ABC-type uncharacteriz 99.0 1.3E-09 2.9E-14 121.0 12.7 169 240-410 254-483 (501)
438 COG3910 Predicted ATPase [Gene 99.0 2.5E-09 5.5E-14 105.4 10.6 69 327-396 125-193 (233)
439 PRK13695 putative NTPase; Prov 99.0 8.2E-10 1.8E-14 109.7 7.3 134 270-408 2-153 (174)
440 TIGR02858 spore_III_AA stage I 98.9 2.7E-09 5.9E-14 113.4 10.3 113 269-397 112-235 (270)
441 cd01124 KaiC KaiC is a circadi 98.8 1.6E-08 3.4E-13 100.8 9.8 119 271-392 2-141 (187)
442 PRK08533 flagellar accessory p 98.8 2.6E-08 5.6E-13 103.7 11.7 132 246-389 10-161 (230)
443 PF13304 AAA_21: AAA domain; P 98.8 8.9E-09 1.9E-13 104.8 7.5 65 328-393 233-301 (303)
444 cd01120 RecA-like_NTPases RecA 98.6 1.4E-07 3E-12 90.7 10.2 121 270-392 1-138 (165)
445 KOG0063 RNAse L inhibitor, ABC 98.6 6.5E-08 1.4E-12 105.5 8.5 80 316-396 198-278 (592)
446 KOG0065 Pleiotropic drug resis 98.6 9.8E-08 2.1E-12 116.6 9.7 152 259-411 133-343 (1391)
447 TIGR00634 recN DNA repair prot 98.6 1.4E-07 2.9E-12 110.7 10.7 114 330-451 439-560 (563)
448 TIGR00618 sbcc exonuclease Sbc 98.6 7.1E-08 1.5E-12 120.8 8.4 81 323-404 942-1034(1042)
449 PRK10869 recombination and rep 98.5 2.9E-07 6.3E-12 107.5 11.0 114 330-451 429-550 (553)
450 PHA02562 46 endonuclease subun 98.5 1.6E-07 3.4E-12 110.0 7.1 88 312-405 452-551 (562)
451 PRK07721 fliI flagellum-specif 98.5 1.8E-06 4E-11 97.6 15.0 141 259-412 151-336 (438)
452 PRK06067 flagellar accessory p 98.5 1E-06 2.3E-11 91.6 12.1 125 264-392 22-166 (234)
453 smart00382 AAA ATPases associa 98.4 2.8E-06 6.1E-11 78.3 12.7 116 269-390 3-125 (148)
454 PRK03918 chromosome segregatio 98.4 3.7E-07 8E-12 112.6 8.4 78 326-404 783-867 (880)
455 PRK01156 chromosome segregatio 98.4 6.8E-07 1.5E-11 110.5 10.5 78 327-404 797-883 (895)
456 PRK06793 fliI flagellum-specif 98.4 7.8E-07 1.7E-11 100.0 8.4 152 248-409 135-301 (432)
457 TIGR02788 VirB11 P-type DNA tr 98.3 2.7E-07 5.9E-12 100.2 3.7 125 260-407 137-269 (308)
458 cd01131 PilT Pilus retraction 98.3 6.9E-07 1.5E-11 90.9 6.3 117 270-402 3-120 (198)
459 PRK10246 exonuclease subunit S 98.3 9.6E-07 2.1E-11 110.5 8.2 70 325-395 943-1021(1047)
460 PTZ00132 GTP-binding nuclear p 98.3 9.7E-07 2.1E-11 90.4 6.5 40 338-378 160-204 (215)
461 TIGR02168 SMC_prok_B chromosom 98.2 1.4E-06 3E-11 110.2 7.2 77 325-403 1083-1164(1179)
462 TIGR02169 SMC_prok_A chromosom 98.2 1.3E-05 2.8E-10 101.7 15.9 76 327-404 1070-1150(1164)
463 TIGR00606 rad50 rad50. This fa 98.2 3.3E-06 7.1E-11 108.2 9.9 76 323-398 1191-1278(1311)
464 TIGR03185 DNA_S_dndD DNA sulfu 98.1 7.8E-05 1.7E-09 89.2 18.3 44 244-289 6-49 (650)
465 COG0419 SbcC ATPase involved i 98.1 5.2E-06 1.1E-10 102.8 7.6 79 326-405 810-897 (908)
466 cd01128 rho_factor Transcripti 98.0 7.7E-06 1.7E-10 86.2 6.5 73 331-408 129-211 (249)
467 cd01125 repA Hexameric Replica 98.0 1.6E-05 3.5E-10 83.1 7.6 46 346-392 109-160 (239)
468 cd00009 AAA The AAA+ (ATPases 97.9 6.2E-05 1.4E-09 70.1 10.3 106 269-392 20-131 (151)
469 PRK13830 conjugal transfer pro 97.9 4.1E-05 8.9E-10 93.6 11.4 63 345-408 649-722 (818)
470 PRK02224 chromosome segregatio 97.9 1.8E-05 3.9E-10 97.8 7.3 77 327-404 777-867 (880)
471 cd02023 UMPK Uridine monophosp 97.9 1.2E-05 2.6E-10 81.4 4.4 90 270-363 1-113 (198)
472 TIGR01420 pilT_fam pilus retra 97.9 2E-05 4.4E-10 86.9 6.5 50 343-400 190-239 (343)
473 COG4637 Predicted ATPase [Gene 97.9 0.00013 2.7E-09 77.8 11.9 65 331-397 270-337 (373)
474 COG0178 UvrA Excinuclease ATPa 97.8 4.6E-05 1E-09 89.6 9.2 88 316-404 465-556 (935)
475 TIGR03881 KaiC_arch_4 KaiC dom 97.8 0.00017 3.6E-09 74.7 12.1 126 264-392 17-167 (229)
476 PRK09183 transposase/IS protei 97.8 3.7E-05 8.1E-10 81.6 7.0 107 259-391 95-206 (259)
477 cd00820 PEPCK_HprK Phosphoenol 97.8 2.9E-05 6.3E-10 71.1 5.1 29 259-288 7-35 (107)
478 TIGR02903 spore_lon_C ATP-depe 97.8 0.00029 6.4E-09 83.6 14.5 20 269-288 176-195 (615)
479 TIGR00767 rho transcription te 97.7 0.00047 1E-08 76.8 14.5 46 242-288 129-188 (415)
480 cd01130 VirB11-like_ATPase Typ 97.7 2.8E-05 6.1E-10 78.2 4.3 27 261-288 19-45 (186)
481 PRK06995 flhF flagellar biosyn 97.7 0.00014 3E-09 83.3 10.3 92 260-360 249-346 (484)
482 PRK14721 flhF flagellar biosyn 97.7 0.00045 9.8E-09 77.9 13.6 90 265-365 189-284 (420)
483 PRK00064 recF recombination pr 97.7 5.9E-05 1.3E-09 83.9 6.4 78 327-408 269-359 (361)
484 PRK04296 thymidine kinase; Pro 97.7 0.00018 3.9E-09 72.7 9.4 130 269-409 3-145 (190)
485 TIGR02655 circ_KaiC circadian 97.6 4.1E-05 8.8E-10 88.4 4.6 124 264-392 18-168 (484)
486 cd01123 Rad51_DMC1_radA Rad51_ 97.6 0.00025 5.5E-09 73.5 10.1 127 264-391 16-170 (235)
487 PF13555 AAA_29: P-loop contai 97.6 6.4E-05 1.4E-09 62.0 4.1 29 260-288 15-43 (62)
488 TIGR01026 fliI_yscN ATPase Fli 97.6 0.00056 1.2E-08 77.8 12.9 141 257-412 153-341 (440)
489 COG1196 Smc Chromosome segrega 97.6 0.0015 3.3E-08 83.2 18.3 28 259-288 17-44 (1163)
490 TIGR00416 sms DNA repair prote 97.6 0.00045 9.7E-09 79.1 12.3 136 264-405 91-245 (454)
491 cd01121 Sms Sms (bacterial rad 97.6 0.00057 1.2E-08 76.2 12.2 120 264-390 79-209 (372)
492 TIGR00152 dephospho-CoA kinase 97.6 7.9E-05 1.7E-09 75.0 4.7 120 270-403 1-130 (188)
493 cd01393 recA_like RecA is a b 97.5 0.0011 2.5E-08 68.2 12.5 128 264-392 16-170 (226)
494 PRK06893 DNA replication initi 97.5 0.00053 1.1E-08 71.4 9.9 94 269-392 40-135 (229)
495 TIGR03880 KaiC_arch_3 KaiC dom 97.5 0.00061 1.3E-08 70.4 10.3 122 264-390 13-153 (224)
496 TIGR02237 recomb_radB DNA repa 97.5 0.00079 1.7E-08 68.6 11.0 125 264-390 9-149 (209)
497 PTZ00454 26S protease regulato 97.5 0.00061 1.3E-08 76.7 10.9 99 269-392 180-295 (398)
498 PF05190 MutS_IV: MutS family 97.5 0.0017 3.6E-08 57.2 11.5 89 47-140 1-90 (92)
499 TIGR00611 recf recF protein. A 97.5 0.00014 3E-09 81.0 5.5 59 330-392 274-342 (365)
500 TIGR03015 pepcterm_ATPase puta 97.5 0.00064 1.4E-08 71.8 10.3 126 264-394 39-168 (269)
No 1
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=100.00 E-value=8.7e-111 Score=995.68 Aligned_cols=665 Identities=37% Similarity=0.553 Sum_probs=579.4
Q ss_pred cchhHHHHHhcCCChHHHHHHHhcccccCCCeecCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeEEe
Q 004463 12 RYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKR 91 (752)
Q Consensus 12 ~~~~l~~~~~~l~~~~~l~~~i~~~i~~~~~~i~d~as~~L~~ir~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~r 91 (752)
.+|.|.+++..+.++++|.+.|.+|||++| .|+|+|||+|+.||+.++++.+++++.+.+.....-...++++.++++|
T Consensus 114 ~~~~L~~~~~~l~~~~~l~~~i~~~id~~g-~i~d~aS~eL~~iR~~~~~~~~~i~~~l~~~~~~~~~~~~L~d~~it~r 192 (782)
T PRK00409 114 ELPILEEWVAKIRTLPELEQEIHNCIDEEG-EVKDSASEKLRGIRRQLRRKKSRIREKLESIIRSKSLQKYLQDTIITIR 192 (782)
T ss_pred chhHHHHHHHcCcCcHHHHHHHHHHhCCCC-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEE
Confidence 479999999999999999999999999985 7999999999999999999888888888775543222245779999999
Q ss_pred cCeEEEEEecccccCCCCcEEEEEcCCCCEEEecccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 004463 92 RSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDR 171 (752)
Q Consensus 92 ~~r~vl~vk~~~~~~~~~g~v~~~s~sg~t~y~ep~~~v~lnn~~~~l~~~e~~ee~~il~~l~~~i~~~~~~l~~~~~~ 171 (752)
++||||||+.+++..+| |++|+.|+||+|+|++|..+++|||++.++..++.+++.+|+++|+..|..+...+..++++
T Consensus 193 ~~r~~i~vk~~~~~~~~-g~v~~~s~sg~t~y~ep~~~~~ln~~l~~l~~~~~~~~~~il~~l~~~i~~~~~~l~~~~~~ 271 (782)
T PRK00409 193 NDRYVLPVKAEYKHAIK-GIVHDQSSSGATLYIEPQSVVELNNEIRELRNKEEQEIERILKELSAKVAKNLDFLKFLNKI 271 (782)
T ss_pred CCEEEEEechhhhccCC-CceeeEECCCCEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcccccccCCCCCCCcceeeEccccCCccccccccccccccCCCCCCCCccCCCeEEEccccc
Q 004463 172 VLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSK 251 (752)
Q Consensus 172 ~~~lD~l~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~ls~ 251 (752)
+++||+++|+|+||.+++||+|.|++.+ .+.++++|||+|..
T Consensus 272 l~~lD~l~a~a~~a~~~~~~~P~~~~~~------~i~l~~~rHPll~~-------------------------------- 313 (782)
T PRK00409 272 FDELDFIFARARYAKALKATFPLFNDEG------KIDLRQARHPLLDG-------------------------------- 313 (782)
T ss_pred HHHHHHHHHHHHHHHHCCCccceEcCCC------cEEEcCcCCceecc--------------------------------
Confidence 9999999999999999999999998754 59999999999842
Q ss_pred ccCCeeEeeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCccc
Q 004463 252 GISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLST 331 (752)
Q Consensus 252 ~y~~~~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~st 331 (752)
..+||+|+.+..+.++++|||||||||||+||++|++++|+|+|+|||+...+.+++|+++|+++|+.+++.+.+|+
T Consensus 314 ---~~~Vpndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lSt 390 (782)
T PRK00409 314 ---EKVVPKDISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLST 390 (782)
T ss_pred ---CceECceeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhH
Confidence 03789999998776899999999999999999999999999999999999767999999999999999999999999
Q ss_pred chHHHHHHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 332 FSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 332 lSgg~krl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
||+||++++.++..+++|+|+||||||+||||.++.+++.++++++.+.++++|+|||+.++..++.....+.|++|.|+
T Consensus 391 fS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d 470 (782)
T PRK00409 391 FSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVEFD 470 (782)
T ss_pred HHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEEEe
Confidence 99999988888777799999999999999999999999999999999889999999999999988888888899999999
Q ss_pred cCccccchhhccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004463 412 LETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAE 491 (752)
Q Consensus 412 ~~~l~~~Y~l~~g~~~~s~a~~ia~~~g~p~~ii~~A~~~~~~~~~~~~~~~~~~~~~~le~~~~~~e~~~~~~~~~~~~ 491 (752)
.+++.|+|++..|.++.|||+++|+++|+|++|+++|+.++.. +..++++++.+|++++.+++++.+++++.+++
T Consensus 471 ~~~l~~~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~-----~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e 545 (782)
T PRK00409 471 EETLRPTYRLLIGIPGKSNAFEIAKRLGLPENIIEEAKKLIGE-----DKEKLNELIASLEELERELEQKAEEAEALLKE 545 (782)
T ss_pred cCcCcEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998864 45689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCC
Q 004463 492 IMDLYREIEDEAKDLDRRAAHLKAKETQQVQQELNFAKVQIDTVVQDFENQLRDASADEINSLIKESESAIAAIVEAHRP 571 (752)
Q Consensus 492 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (752)
+++++++++++.++++++..++.+++.+++++.++++++++++++++|++...........+..+++++.++........
T Consensus 546 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 625 (782)
T PRK00409 546 AEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEK 625 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999987421111101122333444444333221111
Q ss_pred CCCCccccCCCCCCCCCCCCEEEEcccCCeeEEEEEeeCCCceEEEEECceEEEEecCCcccCCCccccCCCCCCccccc
Q 004463 572 DDDFSVSETNTSSFTPQFGEQVHVKSLGDKLATVVEVPGDDDTVLVQYGKMRVRVKKNNIRPIPNSKRKNAANPAPRLRK 651 (752)
Q Consensus 572 ~~~~~~~~~~~~~~~~~vGd~V~v~~~~~~~g~V~~i~~~~~~~~V~~g~~k~~v~~~~l~~~~~~~~~~~~~~~~~~~~ 651 (752)
.. . ........+++||.|+|.++|+ .|+|+++++ ++.++|++|+|||+|+.++|.++...++.+. . .
T Consensus 626 ~~--~--~~~~~~~~~~~Gd~V~v~~~~~-~g~v~~i~~-~~~~~V~~g~~k~~v~~~~l~~~~~~~~~~~-~--~---- 692 (782)
T PRK00409 626 KK--K--KQKEKQEELKVGDEVKYLSLGQ-KGEVLSIPD-DKEAIVQAGIMKMKVPLSDLEKIQKPKKKKK-K--K---- 692 (782)
T ss_pred cc--c--cccccccCCCCCCEEEEccCCc-eEEEEEEcC-CCeEEEEECCEEEEEeHHHceeCcCCCcCcc-c--C----
Confidence 00 0 0011114589999999999997 599999974 4589999999999999999987653211110 0 0
Q ss_pred cccccccCCCCCCCccccCCCccCCCCCceeeccccHHHHHHHHHHHHHcc--CCCCcEEEEecccchHHHHHHHHHhhc
Q 004463 652 QQEDRQSGSAGSSNEEASYGPRVQTSKNSLDLRGMRVEEASHQLDIALACW--ESRSVLFVIHGMGTGVVKERVLEILRN 729 (752)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ldlrG~r~eeA~~~vd~~ld~~--~~~~~v~IiHG~GtG~Lr~~v~~~L~~ 729 (752)
. .... +....++.+|||||||+|||+..||+|||+| +|++.|+||||+|||+||++||+||++
T Consensus 693 ---~----~~~~--------~~~~~~~~~lDL~G~~~eeA~~~l~~fl~~a~~~g~~~v~IIHGkGtG~Lr~~v~~~L~~ 757 (782)
T PRK00409 693 ---P----KTVK--------PKPRTVSLELDLRGMRYEEALERLDKYLDDALLAGYGEVLIIHGKGTGKLRKGVQEFLKK 757 (782)
T ss_pred ---c----cccC--------CCCCCCCceEECCCCCHHHHHHHHHHHHHHHHHcCCCEEEEEcCCChhHHHHHHHHHHcC
Confidence 0 0000 0111355789999999999999999999997 899999999999999999999999999
Q ss_pred CCCcccccCCCCCCC--ceEEEEEC
Q 004463 730 HPRVAKYEQESPMNY--GCTVAYIK 752 (752)
Q Consensus 730 ~p~V~~~~~~~~~~~--G~tvv~~~ 752 (752)
||+|++|++|+|++| |||||+||
T Consensus 758 ~~~V~~f~~a~~~~GG~Gat~V~lk 782 (782)
T PRK00409 758 HPSVKSFRDAPPNEGGFGVTIVELK 782 (782)
T ss_pred CCceeeeeecCcccCCCeEEEEEEC
Confidence 999999999999975 79999986
No 2
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=100.00 E-value=1.3e-108 Score=974.73 Aligned_cols=659 Identities=33% Similarity=0.504 Sum_probs=575.8
Q ss_pred cchhHHHHHhcCCChHHHHHHHhcccccCCCeecCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeEEe
Q 004463 12 RYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKR 91 (752)
Q Consensus 12 ~~~~l~~~~~~l~~~~~l~~~i~~~i~~~~~~i~d~as~~L~~ir~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~r 91 (752)
.||.|..++..+.++++|.+.|.+|||++| .|+|+|||+|++||++++++.+++++.+.+.....-...++++.++|+|
T Consensus 109 ~~~~L~~~~~~l~~~~~l~~~i~~~id~~g-~i~d~aS~~L~~ir~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~it~r 187 (771)
T TIGR01069 109 DLEILFHLRLNLITLPPLENDIIACIDDDG-KVKDGASEELDAIRESLKALEEEVVKRLHKIIRSKELAKYLSDTIVTIR 187 (771)
T ss_pred cchHHHHHHhcCCCcHHHHHHHHHHhCCCC-EECCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcCceEEEE
Confidence 589999999999999999999999999985 7999999999999999999888888887775432112245678999999
Q ss_pred cCeEEEEEecccccCCCCcEEEEEcCCCCEEEecccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 004463 92 RSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDR 171 (752)
Q Consensus 92 ~~r~vl~vk~~~~~~~~~g~v~~~s~sg~t~y~ep~~~v~lnn~~~~l~~~e~~ee~~il~~l~~~i~~~~~~l~~~~~~ 171 (752)
++||||||+++++..+| |++|+.|+||+|+|+||.++++|||++.++..++.+++.+|+++|+..|..+.+.|..++++
T Consensus 188 ~~r~vipvk~~~~~~i~-g~v~~~S~sg~t~~~ep~~~~~ln~~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~ 266 (771)
T TIGR01069 188 NGRYVLPLKSGFKGKIK-GIVHDTSSSGETFYIEPQAIVKLNNKLAQLKNEEECEIEKILRTLSEKVQEYLLELKFLFKE 266 (771)
T ss_pred CCEEEEEeeHHHhhcCC-CeEEEEeCCCCEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcccccccCCCCCCCcceeeEccccCCccccccccccccccCCCCCCCCccCCCeEEEccccc
Q 004463 172 VLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSK 251 (752)
Q Consensus 172 ~~~lD~l~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~ls~ 251 (752)
+++||+++|+|.||..+++++|.+.+++ .+.+.++|||++...
T Consensus 267 l~~lD~l~a~a~~a~~~~~~~P~~~~~~------~i~l~~~rhPll~~~------------------------------- 309 (771)
T TIGR01069 267 FDFLDSLQARARYAKAVKGEFPMPSFTG------KIILENARHPLLKEP------------------------------- 309 (771)
T ss_pred HHHHHHHHHHHHHHHHCCCeeceecCCC------CEEEccccCceecCC-------------------------------
Confidence 9999999999999999999999987754 699999999998410
Q ss_pred ccCCeeEeeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCccc
Q 004463 252 GISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLST 331 (752)
Q Consensus 252 ~y~~~~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~st 331 (752)
.+||+|+.+..+.++++||||||||||||||++|++.+|+++|+++|+...+.+++|++++.++++.+++...+|+
T Consensus 310 ----~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LSt 385 (771)
T TIGR01069 310 ----KVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLST 385 (771)
T ss_pred ----ceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheeeecChHhHHhhhhhH
Confidence 2789999998776899999999999999999999999999999999998777899999999999999999999999
Q ss_pred chHHHHHHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 332 FSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 332 lSgg~krl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
||+||++++.++..+++|+||||||||+||||.++.+|+.++++++.+.|+++|+|||+.+++.++.....+.|++|.|+
T Consensus 386 fS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d 465 (771)
T TIGR01069 386 FSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVLFD 465 (771)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEEEc
Confidence 99999998888887899999999999999999999999999999999999999999999999999888888999999999
Q ss_pred cCccccchhhccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004463 412 LETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAE 491 (752)
Q Consensus 412 ~~~l~~~Y~l~~g~~~~s~a~~ia~~~g~p~~ii~~A~~~~~~~~~~~~~~~~~~~~~~le~~~~~~e~~~~~~~~~~~~ 491 (752)
.+++.|+|++..|.++.|||+.+|+++|+|++|+++|+.++.. ...++++++++|++++.+++++.+++++.+.+
T Consensus 466 ~~~l~p~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~-----~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e 540 (771)
T TIGR01069 466 EETLSPTYKLLKGIPGESYAFEIAQRYGIPHFIIEQAKTFYGE-----FKEEINVLIEKLSALEKELEQKNEHLEKLLKE 540 (771)
T ss_pred CCCCceEEEECCCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998864 45678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCC
Q 004463 492 IMDLYREIEDEAKDLDRRAAHLKAKETQQVQQELNFAKVQIDTVVQDFENQLRDASADEINSLIKESESAIAAIVEAHRP 571 (752)
Q Consensus 492 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (752)
+++.+++++++.+++++++.++..++.+++++.+.++++++++++++|++.... .+..+++++.++.+......
T Consensus 541 ~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~~~~~------~~~~~~~~~~~~~~~~~~~~ 614 (771)
T TIGR01069 541 QEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKEKKIH------KAKEIKSIEDLVKLKETKQK 614 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------HHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999874211 11223333333332221101
Q ss_pred CCCCccccCCCCCCCCCCCCEEEEcccCCeeEEEEEeeCCCceEEEEECceEEEEecCCcccCCCccccCCCCCCccccc
Q 004463 572 DDDFSVSETNTSSFTPQFGEQVHVKSLGDKLATVVEVPGDDDTVLVQYGKMRVRVKKNNIRPIPNSKRKNAANPAPRLRK 651 (752)
Q Consensus 572 ~~~~~~~~~~~~~~~~~vGd~V~v~~~~~~~g~V~~i~~~~~~~~V~~g~~k~~v~~~~l~~~~~~~~~~~~~~~~~~~~ 651 (752)
. . ......... ++||.|+|.++|+ .|+|+++++ ++.++|++|+|||+|++++|.++...++.++ .+ .
T Consensus 615 ~---~-~~~~~~~~~-~~Gd~V~v~~~~~-~g~v~~i~~-~~~~~V~~g~~k~~v~~~~l~~~~~~~~~~~-~~-~---- 681 (771)
T TIGR01069 615 I---P-QKPTNFQAD-KIGDKVRIRYFGQ-KGKIVQILG-GNKWNVTVGGMRMKVHGSELEKINKAPPPKK-FK-V---- 681 (771)
T ss_pred c---c-ccccccccC-CCCCEEEEccCCc-eEEEEEEcC-CCeEEEEECCEEEEEeHHHceecccCCcCCc-cc-c----
Confidence 0 0 000010123 8999999999998 599999974 5689999999999999999987643211000 00 0
Q ss_pred cccccccCCCCCCCccccCCCccCCCCCceeeccccHHHHHHHHHHHHHcc--CCCCcEEEEecccchHHHHHHHHHhhc
Q 004463 652 QQEDRQSGSAGSSNEEASYGPRVQTSKNSLDLRGMRVEEASHQLDIALACW--ESRSVLFVIHGMGTGVVKERVLEILRN 729 (752)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ldlrG~r~eeA~~~vd~~ld~~--~~~~~v~IiHG~GtG~Lr~~v~~~L~~ 729 (752)
. .... +...+++++|||||||+|||+++|++|||+| +|++.|+||||+|||+||++||+||++
T Consensus 682 ---~----~~~~--------~~~~~~~~~ldl~G~~~~eA~~~l~~~ld~a~~~g~~~v~IIHGkGtG~Lr~~v~~~L~~ 746 (771)
T TIGR01069 682 ---P----KTTK--------PEPKEASLTLDLRGQRSEEALDRLEKFLNDALLAGYEVVLIIHGKGSGKLRKGVQELLKN 746 (771)
T ss_pred ---c----cccc--------ccCCCCCceEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEcCCChhHHHHHHHHHhcC
Confidence 0 0000 0011356799999999999999999999996 899999999999999999999999999
Q ss_pred CCCcccccCCCCCCC--ceEEEEEC
Q 004463 730 HPRVAKYEQESPMNY--GCTVAYIK 752 (752)
Q Consensus 730 ~p~V~~~~~~~~~~~--G~tvv~~~ 752 (752)
||+|++|++|+|++| |||||+|+
T Consensus 747 ~~~V~~f~~a~~~~GG~G~t~V~l~ 771 (771)
T TIGR01069 747 HPKVKSFRDAPPNDGGSGVTIVYLE 771 (771)
T ss_pred CcceeeecccCcccCCceEEEEEEC
Confidence 999999999999986 69999985
No 3
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.9e-92 Score=822.99 Aligned_cols=638 Identities=35% Similarity=0.463 Sum_probs=556.0
Q ss_pred HHHHhcCCChHHHHHHHhcccccCCCeecCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeEEecCeEE
Q 004463 17 LELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMC 96 (752)
Q Consensus 17 ~~~~~~l~~~~~l~~~i~~~i~~~~~~i~d~as~~L~~ir~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~r~~r~v 96 (752)
..++..+.+++.++..|..|||.+| .|.|.||++|..||..++.+...+.+.+.+....-- ...+++.++++|++|||
T Consensus 112 ~~~~~~~~~~~~l~~~i~~~id~~g-~i~d~as~~l~~ir~~lr~~~~~i~~~l~~~~~~~~-~~~L~e~~v~~r~~r~v 189 (753)
T COG1193 112 RTLALALIELSDLELEINIPIDDDG-LIKDRASFELDAIRRQLRDLEEEIRDKLESLIRSKE-AKYLQDRIVTTRDGREV 189 (753)
T ss_pred HHHHHhhhcchHHHHHHhhhhcccc-cccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhh-hHhhhhceEeccCCeEE
Confidence 4567888999999999999999995 799999999999999987665555555544332110 23466999999999999
Q ss_pred EEEecccccCCCCcEEEEEcCCCCEEEecccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004463 97 VGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEID 176 (752)
Q Consensus 97 l~vk~~~~~~~~~g~v~~~s~sg~t~y~ep~~~v~lnn~~~~l~~~e~~ee~~il~~l~~~i~~~~~~l~~~~~~~~~lD 176 (752)
+||++.|+..++ |++|+.|++|+|+|++|..++.+||++..+..+|..|+.+|+++|+..+.++...+..+...++++|
T Consensus 190 lpvk~~fk~~i~-giv~d~sssg~tl~ieP~~vv~l~n~~~~l~~eE~~e~e~il~~lsa~v~~~~~~l~~~~~~~~~lD 268 (753)
T COG1193 190 LPVKAEFKGAIK-GIVHDTSSSGATLYIEPRSVVKLNNELRALLVEEDEEEERILRELSALVAPVIPELEILLEIIGELD 268 (753)
T ss_pred eHHHHHhhhhcC-ceEeecccccCeeeecchHHHhhccHhhhhhccchHhHHHHHHHHHHHHhhhhHHHHHHHHHhhhhH
Confidence 999999999998 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcccccccCCCCCCCcceeeEccccCCccccccccccccccCCCCCCCCccCCCeEEEcccccccCCe
Q 004463 177 LAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDF 256 (752)
Q Consensus 177 ~l~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~ls~~y~~~ 256 (752)
++.|+++|+.++.++.|.+++.. .+.+.++|||++..
T Consensus 269 ~i~Ak~~~~~~~~~v~P~~~~~~------~l~l~~~~HPll~~------------------------------------- 305 (753)
T COG1193 269 FIEAKVRYAKALKGVKPDFSNDG------VLELLDARHPLLKE------------------------------------- 305 (753)
T ss_pred HHHHHHHHHHhhccCCCccCCCc------eEEeccccCccCcc-------------------------------------
Confidence 99999999999999999999654 69999999999942
Q ss_pred eEeeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHH
Q 004463 257 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHI 336 (752)
Q Consensus 257 ~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~ 336 (752)
.|++++.+......++|||||++||||+||++|+..+|+|+|+++|+...+.+++|+++|+++||+|++.+.+||||+||
T Consensus 306 ~v~~~i~~~~e~~~l~ITGpN~GGKtvtLKTlgl~~lm~q~gl~i~a~~gsei~~F~~i~aDIGDeQsIeqsLSTFSshm 385 (753)
T COG1193 306 DVPNDLELGEELDRLIITGPNTGGKTVTLKTLGLLRLMAQSGLPIPALEGSELPVFVKIFADIGDEQSIEQSLSTFSSHM 385 (753)
T ss_pred ccccccccccccceeeEecCCCCcceehHHHHHHHHHHHHcCCCeeccCCCcchhHHHhhhccCcHHHHHHHHhhhHHHH
Confidence 36677888777789999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred HHHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeeccCccc
Q 004463 337 SRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLR 416 (752)
Q Consensus 337 krl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~~~~l~ 416 (752)
.+++.++.-+. +|+++||.++||||.+|++++.++++++.+.++.+++|||+.+++.++.....+.|++|.|+.+++.
T Consensus 386 ~~i~~il~~~d--sLvl~DElg~GTdp~EgaaLai~ile~l~~~~~~~~~tTH~~elk~~~~~~~~v~nas~~fd~etL~ 463 (753)
T COG1193 386 TNIVEILEKAD--SLVLFDELGSGTDPDEGAALAIAILEDLLEKPAKIVATTHYRELKALAAEREGVENASMEFDAETLR 463 (753)
T ss_pred HHHHHHHhhcc--hhHHHHHhhcCCCcchhHHHHHHHHHHHHhcccceehHhhHHHHHHHHhcchhhhchhhhhhHHHhh
Confidence 99999985444 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004463 417 PTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLY 496 (752)
Q Consensus 417 ~~Y~l~~g~~~~s~a~~ia~~~g~p~~ii~~A~~~~~~~~~~~~~~~~~~~~~~le~~~~~~e~~~~~~~~~~~~~~~~~ 496 (752)
|+|++..|.+|.|||+.+|.++|+|..+++.|+..... +...++.++..++....++++..+.++..+++.+.+.
T Consensus 464 ptY~l~~G~~g~S~Af~ia~rlGl~~~iie~a~~~~g~-----~~~~~~~~i~~l~~~~~~~~~~~~~~e~~~~e~~~l~ 538 (753)
T COG1193 464 PTYRLLEGVPGRSNAFDIALRLGLPEPIIEEAKTEFGE-----EKELLEELIEKLEEVRKELEEELEEVEKLLDEVELLT 538 (753)
T ss_pred HHHHHhcCCcccchHHHHHHHcCCCHHHHHHHHHhcCc-----hHhHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998763 4567888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 004463 497 REIEDEAKDLDRRAAHLKAKETQQVQQELNFAKVQIDTVVQDFENQLRDASADEINSLIKESESAIAAIVEAHRPDDDFS 576 (752)
Q Consensus 497 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (752)
..+......+.+........+..++...+++++.++.+.+..++...... ........++. +.... .+
T Consensus 539 ~~~s~~~~~l~e~~~~~~~~a~~~~~~~~~~a~~e~~~~i~~~~~~~~~~-------~~~~~e~~~~~--~~~~~---~~ 606 (753)
T COG1193 539 GANSGGKTSLLELKAQIVVLAHMGLPVPAEEAKVEAVDEVKFLKKKKGIL-------DAGAFESTLKD--KKNKV---LP 606 (753)
T ss_pred HhhhcchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHH-------HHHHHHHHhhh--hhccc---Cc
Confidence 99999999999999999999999999999999999999888887211110 11111111111 00000 01
Q ss_pred cccCCCCCCCCCCCCEEEEcccCCeeEEEEEeeCCCceEEEEECceEEEEecCCcccCCCccccCCCCCCcccccccccc
Q 004463 577 VSETNTSSFTPQFGEQVHVKSLGDKLATVVEVPGDDDTVLVQYGKMRVRVKKNNIRPIPNSKRKNAANPAPRLRKQQEDR 656 (752)
Q Consensus 577 ~~~~~~~~~~~~vGd~V~v~~~~~~~g~V~~i~~~~~~~~V~~g~~k~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (752)
... ...+++||.|++.+ |+ .|.|++|..+.++|.|++|.|+|+|+..+++.+...++. +.+
T Consensus 607 ---~~~-~~~l~~gDev~~~t-~e-~G~~~~i~a~~~e~~v~~g~~kv~V~~~~~~~~~~~~~~---k~k---------- 667 (753)
T COG1193 607 ---EAK-KRKLKLGDEVEVIT-GE-PGAVVKIIAGILEALVQSGILKVIVSHLDLEIIKEEPKV---KVK---------- 667 (753)
T ss_pred ---ccc-ccCceecceeEeec-CC-ccceeeeeccCceeEEecceeEEEEehhHHHHhccCCCC---CCC----------
Confidence 111 35689999999999 87 599999986678999999999999999999876522110 000
Q ss_pred ccCCCCCCCccccCCCccCCCCCceeeccccHHHHHHHHHHHHHcc--CCCCcEEEEecccchHHHHHHHHHhhcCCCcc
Q 004463 657 QSGSAGSSNEEASYGPRVQTSKNSLDLRGMRVEEASHQLDIALACW--ESRSVLFVIHGMGTGVVKERVLEILRNHPRVA 734 (752)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~ldlrG~r~eeA~~~vd~~ld~~--~~~~~v~IiHG~GtG~Lr~~v~~~L~~~p~V~ 734 (752)
+ +. .+ ...++++||||+|+|+|+.+|++|+|+| +|+..|+||||||||+||++|++||++||+|+
T Consensus 668 --~--i~-------~~--~~~~~~ldLrg~r~e~a~~~l~k~i~eail~~~~~v~iihgkGtG~lre~v~~~Lk~~~~v~ 734 (753)
T COG1193 668 --G--IE-------AP--GLDSNRLDLRGERSEEALDELDKSIDEAILEGYEKVSIIHGKGTGKLREGVQEYLKKHKKVK 734 (753)
T ss_pred --C--cC-------CC--CCccccccccccccHHHHHHHHhhhHHHHHcCCcceeEEeeeechHHHHHHHHHHHhCCCcc
Confidence 0 00 01 1114689999999999999999999997 89999999999999999999999999999999
Q ss_pred cccCCCCCCC--ceEEEEE
Q 004463 735 KYEQESPMNY--GCTVAYI 751 (752)
Q Consensus 735 ~~~~~~~~~~--G~tvv~~ 751 (752)
+|++|+|++| |||||+|
T Consensus 735 ~~~~~~~~~GG~G~tiv~l 753 (753)
T COG1193 735 SFRDAPPNEGGSGVTIVEL 753 (753)
T ss_pred CcCCCCcCCCCCCeeEEeC
Confidence 9999999986 6999986
No 4
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=100.00 E-value=1e-59 Score=562.34 Aligned_cols=399 Identities=24% Similarity=0.351 Sum_probs=361.0
Q ss_pred chhHHHHHhcCCChHHHHHHHhccccc-------CCCeecCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 004463 13 YSPLLELLKNCNFLTELEEKIGFCIDC-------KLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDK 85 (752)
Q Consensus 13 ~~~l~~~~~~l~~~~~l~~~i~~~i~~-------~~~~i~d~as~~L~~ir~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 85 (752)
.|.|..+...++++.++.+.|+++|++ +++.|+|++|++|+++|+.+++..+|+.++..+.. ...+++.
T Consensus 372 ~~~l~~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~I~~g~~~~Ld~lr~~~~~~~~~l~~l~~~~~----~~~~i~~ 447 (840)
T TIGR01070 372 GPTLQALAAQIDDFSELLELLEAALIENPPLVVRDGGLIREGYDEELDELRAASREGTDYLARLEARER----ERTGIPT 447 (840)
T ss_pred cHHHHHHHHhcccHHHHHHHHHHHHhcCCccccccCCeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCCCc
Confidence 577888999999999999999999973 34689999999999999999988888887765422 2234554
Q ss_pred ceeEE-ecCeEEEEEecccccCCCCcEEEEEcCCCCEEEecccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHH
Q 004463 86 PLITK-RRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSERE 164 (752)
Q Consensus 86 ~~i~~-r~~r~vl~vk~~~~~~~~~g~v~~~s~sg~t~y~ep~~~v~lnn~~~~l~~~e~~ee~~il~~l~~~i~~~~~~ 164 (752)
..+.. ...+|+|+|+.++...+|+.|++.+|.+|.++|++|. +.++++++.++..++..++.+|+.+|...+..+...
T Consensus 448 lk~~~~~~~gy~iev~~~~~~~vp~~~i~~~s~~~~~rf~tpe-l~~l~~~l~~~~~~~~~~e~~i~~~L~~~i~~~~~~ 526 (840)
T TIGR01070 448 LKVGYNAVFGYYIEVTRGQLHLVPAHYRRRQTLKNAERYITPE-LKEKEDKVLEAEGKILALEKELFEELRELLKKYLEA 526 (840)
T ss_pred eEEEEecCceEEEEEehhhhhcCCcceEEEEeccCceEEcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 3459999999999999996699999999999999997 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCCCCCcceeeEccccCCccccccccccccccCCCCCCCCccCCCeE
Q 004463 165 IKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEM 244 (752)
Q Consensus 165 l~~~~~~~~~lD~l~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l 244 (752)
+..+.++++.||+++|+|.+|.+++||+|.|++.+ .+.|+++|||++... .
T Consensus 527 l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~------~i~i~~~RHP~le~~-~---------------------- 577 (840)
T TIGR01070 527 LQEAARALAELDVLANLAEVAETLHYTRPRFGDDP------QLRIREGRHPVVEQV-L---------------------- 577 (840)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCcCceecCCC------cEEEEeeECHHHHhc-c----------------------
Confidence 99999999999999999999999999999998764 599999999999421 0
Q ss_pred EEcccccccCCeeEeeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchh
Q 004463 245 TVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQS 324 (752)
Q Consensus 245 ~~~~ls~~y~~~~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~ 324 (752)
++.+||||+.+..+.++++|||||||||||+||++||+++|||+|+|||++. +.+++||+||+++|..|+
T Consensus 578 ---------~~~~VpNdi~l~~~~~~~iITGPNmgGKSt~lrqvali~imAq~G~~VPA~~-a~i~~~D~Iftrig~~d~ 647 (840)
T TIGR01070 578 ---------RTPFVPNDLEMAHNRRMLLITGPNMGGKSTYMRQTALIALLAQIGSFVPAES-AELPLFDRIFTRIGASDD 647 (840)
T ss_pred ---------CCCeEeeeeecCCCccEEEEECCCCCCchHHHHHHHHHHHHHhcCCCccchh-eEeccccEEEEecCcccc
Confidence 0137899999987667999999999999999999999999999999999996 899999999999999999
Q ss_pred hhcCcccchHHHHHHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhcccccc
Q 004463 325 LEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRF 403 (752)
Q Consensus 325 i~~~~stlSgg~krl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~l~~~a~~~~~i 403 (752)
+.++.|||+.+|.+++.|+..+++++||||||+|+|||+.+|.+|++++++++.+ .++.+|++|||+++..++.....+
T Consensus 648 i~~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~l~~~~~~v 727 (840)
T TIGR01070 648 LASGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTALEESLPGL 727 (840)
T ss_pred hhcCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHHHhhhCCCe
Confidence 9999999999999999999999999999999999999999999999999999998 789999999999999999888889
Q ss_pred cCCceee--ccCccccchhhccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHhh
Q 004463 404 ENAATEF--SLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERL 455 (752)
Q Consensus 404 ~~g~v~~--~~~~l~~~Y~l~~g~~~~s~a~~ia~~~g~p~~ii~~A~~~~~~~ 455 (752)
.|.+|.+ +.+++.|+|++..|.+++|||+++|+++|+|++|+++|+..+..+
T Consensus 728 ~n~~~~~~~~~~~l~flYkl~~G~~~~Sygi~VA~laGlP~~VI~rA~~il~~l 781 (840)
T TIGR01070 728 KNVHVAALEHNGTIVFLHQVLPGPASKSYGLAVAALAGLPKEVIARARQILTQL 781 (840)
T ss_pred EEEEEEEEEECCcEEEEEEECCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999977 567899999999999999999999999999999999999987654
No 5
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=100.00 E-value=9.9e-58 Score=548.02 Aligned_cols=398 Identities=25% Similarity=0.375 Sum_probs=359.6
Q ss_pred chhHHHHHhcCCChHHHHHHHhcccccC-------CCeecCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 004463 13 YSPLLELLKNCNFLTELEEKIGFCIDCK-------LLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDK 85 (752)
Q Consensus 13 ~~~l~~~~~~l~~~~~l~~~i~~~i~~~-------~~~i~d~as~~L~~ir~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 85 (752)
.|.|..+...+.++.++.+.|+++|+++ ++.|+|++|++|+++|+.+++..++++++.++...+ .++..
T Consensus 386 ~~~l~~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~----~~~~~ 461 (854)
T PRK05399 386 SPLLAELAEQLDPLEELADLLERAIVEEPPLLIRDGGVIADGYDAELDELRALSDNGKDWLAELEARERER----TGISS 461 (854)
T ss_pred cHHHHHHHhhcccHHHHHHHHHHHHccCCchhcccCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCc
Confidence 4778888899999999999999999862 468999999999999999999999998887664332 23332
Q ss_pred ceeEEecC---eEEEEEecccccCCCCcEEEEEcCCCCEEEecccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhH
Q 004463 86 PLITKRRS---RMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSE 162 (752)
Q Consensus 86 ~~i~~r~~---r~vl~vk~~~~~~~~~g~v~~~s~sg~t~y~ep~~~v~lnn~~~~l~~~e~~ee~~il~~l~~~i~~~~ 162 (752)
+.++++ +|+|+|+..+...+|++|++.++.+|.++|++|. +.++++++.++..++..++.+|+.+|...+..+.
T Consensus 462 --l~~~~~~~~gy~iev~~~~~~~vp~~~~~~~s~~~~~rf~t~~-l~~l~~~l~~~~~~~~~~e~~i~~~l~~~i~~~~ 538 (854)
T PRK05399 462 --LKVGYNKVFGYYIEVTKANLDKVPEDYIRRQTLKNAERYITPE-LKELEDKILSAEEKALALEYELFEELREEVAEHI 538 (854)
T ss_pred --eEEEEcCceeEEEEEEcchhhhCChhhhheeeccCeEEEECHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444 5999999998889997799999999999999997 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCCCCCcceeeEccccCCccccccccccccccCCCCCCCCccCCC
Q 004463 163 REIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENS 242 (752)
Q Consensus 163 ~~l~~~~~~~~~lD~l~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~ 242 (752)
..+..+.+++++||+++|+|.+|..++||+|.|.+++ .+.|+++|||++... ..
T Consensus 539 ~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~------~l~i~~~rHP~le~~-~~------------------- 592 (854)
T PRK05399 539 ERLQKLAKALAELDVLASLAEVAEENNYVRPEFTDDP------GIDIEEGRHPVVEQV-LG------------------- 592 (854)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCccccEEeCCC------CEEEEeccCcEEecc-cC-------------------
Confidence 9999999999999999999999999999999998754 599999999998421 00
Q ss_pred eEEEcccccccCCeeEeeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCc
Q 004463 243 EMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDH 322 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~ 322 (752)
++.+||+|+.+..+.++++|||||||||||+||++|++++|||+|+|||+.. +.+++||.||+++|..
T Consensus 593 -----------~~~~vpnd~~l~~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~VPa~~-a~i~~~d~I~triga~ 660 (854)
T PRK05399 593 -----------GEPFVPNDCDLDEERRLLLITGPNMAGKSTYMRQVALIVLLAQIGSFVPAES-ARIGIVDRIFTRIGAS 660 (854)
T ss_pred -----------CCceEecceeeCCCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCCceeccc-eEecccCeeeeccCcc
Confidence 0137899999986668999999999999999999999999999999999996 8999999999999999
Q ss_pred hhhhcCcccchHHHHHHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcC-CcEEEEEecchhHHhhhcccc
Q 004463 323 QSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDT 401 (752)
Q Consensus 323 ~~i~~~~stlSgg~krl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~-~~tviitTH~~~l~~~a~~~~ 401 (752)
|++..+.|||+.+|.+++.|+..+++++||||||||+||++.+|.++++++++++.+. ++++|++||++++..++++..
T Consensus 661 d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~~l~~~~~ 740 (854)
T PRK05399 661 DDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELTELEEKLP 740 (854)
T ss_pred cccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHHHHhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999987 589999999999999999888
Q ss_pred cccCCceeecc--CccccchhhccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHhh
Q 004463 402 RFENAATEFSL--ETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERL 455 (752)
Q Consensus 402 ~i~~g~v~~~~--~~l~~~Y~l~~g~~~~s~a~~ia~~~g~p~~ii~~A~~~~~~~ 455 (752)
.+.|.+|.++. +++.|+|++..|.+++|||+++|+++|+|++|+++|+..+..+
T Consensus 741 ~v~n~~m~~~~~~~~l~flYkl~~G~~~~SyGi~VA~laGlP~~VI~rA~~i~~~l 796 (854)
T PRK05399 741 GVKNVHVAVKEHGGDIVFLHKVVPGAADKSYGIHVAKLAGLPASVIKRAREILAQL 796 (854)
T ss_pred CeEEEEEEEEEeCCeEEEEEEeCcCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999998875 6899999999999999999999999999999999999987653
No 6
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.5e-52 Score=492.00 Aligned_cols=392 Identities=25% Similarity=0.373 Sum_probs=348.8
Q ss_pred cCCChHHHHHHHhcccccCC------CeecCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeEEecC-e
Q 004463 22 NCNFLTELEEKIGFCIDCKL------LIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRS-R 94 (752)
Q Consensus 22 ~l~~~~~l~~~i~~~i~~~~------~~i~d~as~~L~~ir~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~r~~-r 94 (752)
.++.+.++...++.+|.++. +.|+++.+++|+++|.......+|+..+..+ .....++....+..++. .
T Consensus 397 ~~~~~~e~~~ll~~~i~~~~~~~~~~~ii~~g~~~eLd~lr~~~~~~~~~i~~le~~----~r~~~gi~slki~~n~v~G 472 (843)
T COG0249 397 SLDYLAELLELLETAINEDPPLAVRDGIIKEGYNIELDELRDLLNNAKEWIAKLELE----ERERTGIKSLKIKYNKVYG 472 (843)
T ss_pred ccccHHHHHHHHHHHhhhcchhhcchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCchhhhhhhccce
Confidence 45555688888888888643 3699999999999999998888888877654 22334566655555554 7
Q ss_pred EEEEEecccccCCCCcEEEEEcCCCCEEEecccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 004463 95 MCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLE 174 (752)
Q Consensus 95 ~vl~vk~~~~~~~~~g~v~~~s~sg~t~y~ep~~~v~lnn~~~~l~~~e~~ee~~il~~l~~~i~~~~~~l~~~~~~~~~ 174 (752)
|+|.|+......+|.+|++.++.+++.+|.+|. +.+++.++..++......|.+++.++.+.+..|.+.++.+..++++
T Consensus 473 y~ievt~~~~~~~p~~~ir~qt~kn~~rf~t~e-l~~~e~~i~~a~~~i~~lE~~l~~~~~~~i~~~~~~l~~~a~aLa~ 551 (843)
T COG0249 473 YYIEVTKSNAKLVPDDYIRRQTLKNAERFTTPE-LKELEEKLLDAEEKILALEYELFDELREKILAHINELQALAKALAE 551 (843)
T ss_pred eEEEechhccccCchHHHHHHHHhcceEecCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997799999999999999985 8889999988888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcccccccCCCCCCCcceeeEccccCCccccccccccccccCCCCCCCCccCCCeEEEcccccccC
Q 004463 175 IDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGIS 254 (752)
Q Consensus 175 lD~l~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~ls~~y~ 254 (752)
||+++++|.+|...+||+|.|++.. .+.|+++|||+++. ...+
T Consensus 552 lD~l~slA~~a~~~~y~rP~~~~~~------~l~i~~gRHPvvE~-~~~~------------------------------ 594 (843)
T COG0249 552 LDVLSSLAEIAAEQNYVRPEFVDSN------DLEIKEGRHPVVEA-VLDN------------------------------ 594 (843)
T ss_pred HHHHHHHHHHHhhCCCCCceecCCC------CEEEEecCcchhhh-hccC------------------------------
Confidence 9999999999999999999999874 39999999999942 1111
Q ss_pred CeeEeeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchH
Q 004463 255 DFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG 334 (752)
Q Consensus 255 ~~~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSg 334 (752)
.+||||+.++.+.++++|||||||||||+||++|++++|||+|+|||++. +.+++||+||+++|..|++..+-|||+.
T Consensus 595 -~fVpNd~~L~~~~~i~lITGPNM~GKSTylRQvali~imAQiGsfVPA~~-A~i~ivD~IfTRiGa~DDL~~G~STFMv 672 (843)
T COG0249 595 -GFVPNDIDLSGNRRIILITGPNMGGKSTYLRQVALIVILAQIGSFVPAEK-ARIGIVDRIFTRIGAADDLASGRSTFMV 672 (843)
T ss_pred -CcccCceeeCCCceEEEEECCCCCccHHHHHHHHHHHHHHHcCCCeeHHH-ccccccceeeecccccchhhccccHHHH
Confidence 26899999998669999999999999999999999999999999999996 8999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcC-CcEEEEEecchhHHhhhcccccccCCceeec--
Q 004463 335 HISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEFS-- 411 (752)
Q Consensus 335 g~krl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~-~~tviitTH~~~l~~~a~~~~~i~~g~v~~~-- 411 (752)
+|.+++.|+..+++.+||||||.|+||++.+|.+|++|+++||++. ++.+|++|||++|..+......+.|.+|...
T Consensus 673 EM~Eta~IL~~AT~~SLvilDEiGRGTsT~DGlaIA~Av~eyL~~~~~~~tLFATHy~ELt~l~~~~~~v~N~h~~~~e~ 752 (843)
T COG0249 673 EMLETANILDNATERSLVILDEIGRGTSTYDGLAIAWAVLEYLHEKIGCRTLFATHYHELTELEEKLPQVKNYHMSAVEE 752 (843)
T ss_pred HHHHHHHHHHhCCCCcEEEEecccCCCCcchhHHHHHHHHHHHHhccCceEEEeccHHHHHHhhhcccccceeEEEEEEc
Confidence 9999999999999999999999999999999999999999999995 8999999999999999998888888887543
Q ss_pred cCccccchhhccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHhhch
Q 004463 412 LETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRP 457 (752)
Q Consensus 412 ~~~l~~~Y~l~~g~~~~s~a~~ia~~~g~p~~ii~~A~~~~~~~~~ 457 (752)
.+++.++|++..|.+..|||+++|+.+|+|.+|+++|++.+.++..
T Consensus 753 ~~~i~Fl~kv~~G~a~~SyGi~VAklaGlP~~Vi~rA~~il~~le~ 798 (843)
T COG0249 753 GGDITFLYKVKPGIADKSYGIHVAKLAGLPEEVIERAREILAELEK 798 (843)
T ss_pred CCceEEEEEeccCCCCccHHHHHHHHhCCCHHHHHHHHHHHHHHhh
Confidence 4568899999999999999999999999999999999998876543
No 7
>KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair]
Probab=100.00 E-value=8.4e-44 Score=393.66 Aligned_cols=328 Identities=25% Similarity=0.376 Sum_probs=279.4
Q ss_pred eeEEecCeEEEEEecccccCCCCcEEEEEcCCCCEEEecccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 004463 87 LITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIK 166 (752)
Q Consensus 87 ~i~~r~~r~vl~vk~~~~~~~~~g~v~~~s~sg~t~y~ep~~~v~lnn~~~~l~~~e~~ee~~il~~l~~~i~~~~~~l~ 166 (752)
+.++.+-.|+|.|+......+|..||...|......|..|. ++.+-.++..++..-..+-......+-..+.+|..+++
T Consensus 686 f~~vsgv~flIEvkns~~kkiP~dWiKvnsTk~vsRfhtP~-iq~~l~eL~~~~e~L~i~sea~~~sFL~kiSehYtelr 764 (1070)
T KOG0218|consen 686 FRQVSGVDFLIEVKNSQIKKIPDDWIKVNSTKMVSRFHTPR-IQKLLQELEYYKELLIIESEAQYKSFLNKISEHYTELR 764 (1070)
T ss_pred eEEecCeeEEEEecccccccCCccceeeccceeeeecCCHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 45556669999999888889999999988887888888885 66555555444433333334566677788888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccccccCCCCCCCcceeeEccccCCccccccccccccccCCCCCCCCccCCCeEEE
Q 004463 167 YLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTV 246 (752)
Q Consensus 167 ~~~~~~~~lD~l~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 246 (752)
++...++.+||++++|+.+...+||||+|+++.. .|.|++||||+++ ..+.
T Consensus 765 kat~~LatlDCi~SlA~~s~n~nYvRPtfvd~~~-----eI~ikngRhPvIe-~Ll~----------------------- 815 (1070)
T KOG0218|consen 765 KATLNLATLDCILSLAATSCNVNYVRPTFVDGQQ-----EIIIKNGRHPVIE-SLLV----------------------- 815 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccCcccccchh-----hhhhhcCCCchHH-HHhh-----------------------
Confidence 9999999999999999999999999999998532 5999999999984 2111
Q ss_pred cccccccCCeeEeeeEEEc-cCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhh
Q 004463 247 GSLSKGISDFPVPIDIKVE-CETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSL 325 (752)
Q Consensus 247 ~~ls~~y~~~~v~idl~l~-~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i 325 (752)
+.+||+|+.+. .|.++.+||||||||||.++|+++|+.+|||+|+|||++. +.+++||.+|++||..|++
T Consensus 816 --------d~fVPNdi~ls~egerc~IITGPNMGGKSsyIrQvALitIMAQiGsfVPAee-a~l~IfdgvltRmGAsDnI 886 (1070)
T KOG0218|consen 816 --------DYFVPNDIMLSPEGERCNIITGPNMGGKSSYIRQVALITIMAQIGSFVPAEE-ARLSIFDGVLTRMGASDNI 886 (1070)
T ss_pred --------hccCCCcceecCCCceEEEEeCCCCCCchHHHHHHHHHHHHHHhcCccchHH-hhhhHHhhHHHhhcccccc
Confidence 13688888774 3458999999999999999999999999999999999997 8999999999999999999
Q ss_pred hcCcccchHHHHHHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcC-CcEEEEEecchhHHhhhccccc-c
Q 004463 326 EQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTR-F 403 (752)
Q Consensus 326 ~~~~stlSgg~krl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~-~~tviitTH~~~l~~~a~~~~~-i 403 (752)
..+-|||..+|.....++..++..+||||||.|+||...+|.+|+.|.++|+.+. .+.+++||||+.+..+...... +
T Consensus 887 ~~grSTFm~Emldt~eil~kat~~SlvilDElGRGTsThDGiAIsYAtL~yf~~~~k~l~LFvTHfP~l~eie~~f~gqv 966 (1070)
T KOG0218|consen 887 INGRSTFMVEMLDTLEILKKATKRSLVILDELGRGTSTHDGIAISYATLKYFSELSKCLILFVTHFPMLGEIESGFPGQV 966 (1070)
T ss_pred ccchhHHHHHHHHHHHHHHhcccchhhhhHhhcCCCccccchhHHHHHHHHHHHhhceeEEeeecCcchhhhhcCCCccc
Confidence 9999999999999999999999999999999999999999999999999999874 5689999999999887665443 5
Q ss_pred cCCceee---------ccCccccchhhccCCCCCchHHHHHHHcCCCHHHHHHHHHHHH
Q 004463 404 ENAATEF---------SLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVE 453 (752)
Q Consensus 404 ~~g~v~~---------~~~~l~~~Y~l~~g~~~~s~a~~ia~~~g~p~~ii~~A~~~~~ 453 (752)
.|.+|.| |.+...++|++..|.+..||++.+|+.+++|.+++.||-....
T Consensus 967 ~nyHmgyl~sedk~~~d~dsVtfLYklvrGlasrSyGlnVAklA~ip~sii~rA~siSe 1025 (1070)
T KOG0218|consen 967 RNYHMGYLESEDKTGEDWDSVTFLYKLVRGLASRSYGLNVAKLARIPKSIINRAFSISE 1025 (1070)
T ss_pred cceeeeeeeeccccCCCchhhhhHHHHhhhhhhccccccHHHHhCCCHHHHHHHHHHHH
Confidence 6666654 3456788999999999999999999999999999999977654
No 8
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=5.6e-40 Score=370.26 Aligned_cols=395 Identities=21% Similarity=0.325 Sum_probs=325.5
Q ss_pred HHhcCCChHHHHHHHhcccccC-----CCeecCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeEEecC
Q 004463 19 LLKNCNFLTELEEKIGFCIDCK-----LLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRS 93 (752)
Q Consensus 19 ~~~~l~~~~~l~~~i~~~i~~~-----~~~i~d~as~~L~~ir~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~r~~ 93 (752)
+.+.+..+..+...+...+|.+ -..|+.+.+|+|.+||+.+.+++..+++..++....+-+... ..+....+.
T Consensus 423 l~~~~~~~~kf~~~ve~t~D~da~ee~ey~VR~eFdeeL~eLrq~LdeL~~~m~~~hkrv~~dl~~D~~--kklkLe~~~ 500 (902)
T KOG0219|consen 423 LTEHLKKLEKFQEMVETTVDLDAEEENEYRVRVDFDEELQELREKLDELERKMEKLHKKVSADLGLDPK--KQLKLENSA 500 (902)
T ss_pred hhhhhhhHHHHHHHHHHHhhHhHHhcCcEEEecccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc--cceeeeccc
Confidence 3344456677778888887742 236999999999999999999999999888876554333110 113333333
Q ss_pred --eEEEEEecccccCCC--CcEEEEEcCCCCEEEecccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 004463 94 --RMCVGIKASHKYLLP--DGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLM 169 (752)
Q Consensus 94 --r~vl~vk~~~~~~~~--~g~v~~~s~sg~t~y~ep~~~v~lnn~~~~l~~~e~~ee~~il~~l~~~i~~~~~~l~~~~ 169 (752)
+||+.+.......+. .++..-....| .+|++...+-.|||+....+-+-...+..|.+++...-..|.+-+....
T Consensus 501 ~~G~~~RlTr~e~~~LR~~k~y~eLstqK~-GV~FTtk~L~slN~e~~~~qk~Y~~~Q~~ivrevikia~tY~Ppleal~ 579 (902)
T KOG0219|consen 501 QFGWYFRVTRKEEKVLRKKKNYTELSTQKG-GVKFTTKKLSSLNDEFMSLQKEYDEAQNEIVREIIKIAATYTPPLEALN 579 (902)
T ss_pred hhheeeeeeehhhhHhhccCCceEEEEeeC-cEEEEhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHH
Confidence 688888753322221 24433333334 6888888899999999999888888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH--hcCcccccccCCCCCCCcceeeEccccCCccccccccccccccCCCCCCCCccCCCeEEEc
Q 004463 170 DRVLEIDLAFARAGFAQ--WMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVG 247 (752)
Q Consensus 170 ~~~~~lD~l~a~a~~a~--~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~ 247 (752)
+.++.+|++.|+|..|. ...|+||.+.+.+ +..+.++++|||+++... ..
T Consensus 580 ~vlAhLDv~~SFa~~st~a~~pYvRP~~l~~g----s~rl~l~~~rHp~lE~Qd--~~---------------------- 631 (902)
T KOG0219|consen 580 QVLAHLDVFVSFAHAATVAPIPYVRPKLLPLG----SKRLELKQSRHPVLEGQD--EI---------------------- 631 (902)
T ss_pred HHHHHHHhheeehhhcccCCCCccCccccccc----hhHHHHHhcccchhhccc--cC----------------------
Confidence 99999999999999887 7789999988754 226899999999995321 00
Q ss_pred ccccccCCeeEeeeEEEc--cCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhh
Q 004463 248 SLSKGISDFPVPIDIKVE--CETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSL 325 (752)
Q Consensus 248 ~ls~~y~~~~v~idl~l~--~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i 325 (752)
.++|+|..++ ++ ++++||||||+||||++|+.|.+.+|||+|+|||++. +.++++|.|+++.|.+|+.
T Consensus 632 --------~fIpNdv~le~~~~-~~~IiTGpNMGGKSTyir~~Gvi~lmAQIGcfVPce~-A~i~IvD~Il~RVGA~D~q 701 (902)
T KOG0219|consen 632 --------PFIPNDVVLEKGKC-RMLIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCES-ATISIVDGILTRVGAGDSQ 701 (902)
T ss_pred --------CCCCCccccccCCc-eEEEEeCCCcCccchhhhhhhHHHHHHHhCCceehhh-cCCchhhHHHhhhccchhh
Confidence 2566666665 66 8999999999999999999999999999999999996 8999999999999999999
Q ss_pred hcCcccchHHHHHHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcC-CcEEEEEecchhHHhhhccccccc
Q 004463 326 EQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFE 404 (752)
Q Consensus 326 ~~~~stlSgg~krl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~-~~tviitTH~~~l~~~a~~~~~i~ 404 (752)
-+++||||.+|-..+.|+..+++.+||++|||++||...+|-.+++++-+++..+ |+..|++||++++..++.....+.
T Consensus 702 ~kG~STFM~Emleta~Ilr~at~~SliiiDELGRGTSt~DGfgiAwai~ehi~~ki~cf~lfATHfhElt~lae~~~~vK 781 (902)
T KOG0219|consen 702 LKGISTFMAEMLETASILRRATKNSLIIIDELGRGTSTYDGFGIAWAIAEHIATKIGCFCLFATHFHELTKLAEQLPTVK 781 (902)
T ss_pred hcchHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCceeccCccHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999998765 677899999999999998888888
Q ss_pred CCceeec--cCccccchhhccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHh
Q 004463 405 NAATEFS--LETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVER 454 (752)
Q Consensus 405 ~g~v~~~--~~~l~~~Y~l~~g~~~~s~a~~ia~~~g~p~~ii~~A~~~~~~ 454 (752)
|-+|... .++..-.|.+..|+++.|+++.+|+..|+|+.+++.|+.....
T Consensus 782 n~h~~a~i~~~~~~llY~V~~Gv~d~SFGi~VA~~a~fp~~vie~A~~~~~e 833 (902)
T KOG0219|consen 782 NLHVTAQIENDDITLLYKVFEGVCDQSFGIHVAELVGFPEHVIEMAKQKAEE 833 (902)
T ss_pred hheeeeEecCcchhhHHHHhcccccCcchhhHHHHcCCChHHHHHHHHHHHH
Confidence 8777543 4567778999999999999999999999999999999887754
No 9
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=100.00 E-value=2.2e-40 Score=343.78 Aligned_cols=227 Identities=36% Similarity=0.634 Sum_probs=184.9
Q ss_pred cccccccCCCCCCCcceeeEccccCCccccccccccccccCCCCCCCCccCCCeEEEcccccccCCeeEeeeEEEccCc-
Q 004463 190 GVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECET- 268 (752)
Q Consensus 190 ~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~ls~~y~~~~v~idl~l~~g~- 268 (752)
||+|.|+++. .+.++++|||++... .++ +.+||+|+.+..+.
T Consensus 1 y~~P~~~~~~------~l~i~~~~HPll~~~-~~~------------------------------~~~v~ndi~~~~~~~ 43 (235)
T PF00488_consen 1 YCRPKISEEK------SLKIKEGRHPLLEEK-LEN------------------------------KKFVPNDIELSNNKS 43 (235)
T ss_dssp EB-EEEESTT------EEEEEEE--TTHHHH-TTT------------------------------SSC--EEEEESSSSS
T ss_pred CcccEEcCCC------CEEEEeccCCEEecc-ccC------------------------------CceecceeecCCCce
Confidence 6899999875 699999999999532 111 13689999998874
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHHHHHHHHHccCC
Q 004463 269 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSR 348 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~krl~~i~~la~~ 348 (752)
++++|||||+|||||+||+||++.+|||+|+|||++. +.+++||.|+++++..|++..+.|+|..++++++.++..+++
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~-~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~ 122 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAES-AEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATE 122 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSE-EEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--T
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecc-cccccccEEEeecccccccccccccHHHhHHHHHhhhhhccc
Confidence 5999999999999999999999999999999999997 789999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhcccccccCCceeec--cCccccchhhccCC
Q 004463 349 ESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS--LETLRPTYRILWGS 425 (752)
Q Consensus 349 ~~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~--~~~l~~~Y~l~~g~ 425 (752)
.+|||+||+++||+|.+|.+++.+++++|.+ .++.+|++||++++..+......+.+.+|.+. .+.+.++|++..|.
T Consensus 123 ~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~f~Ykl~~G~ 202 (235)
T PF00488_consen 123 KSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAELLERNPNVQNYHMEVEEDNDSLTFTYKLKEGI 202 (235)
T ss_dssp TEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEES-
T ss_pred ceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHHHhhhCccccccceeeeeeccccceeEEEeECC
Confidence 9999999999999999999999999999998 58999999999999887766666666667654 46788999999999
Q ss_pred CCCchHHHHHHHcCCCHHHHHHHHHHHHh
Q 004463 426 TGDSNALNIAKSIGFDRKIIQRAQKLVER 454 (752)
Q Consensus 426 ~~~s~a~~ia~~~g~p~~ii~~A~~~~~~ 454 (752)
++.|||+.+|+.+|+|++++++|++.+..
T Consensus 203 ~~~S~ai~iA~~~g~p~~II~rA~~i~~~ 231 (235)
T PF00488_consen 203 CSSSYAIEIAKLAGLPEEIIERAKEILKQ 231 (235)
T ss_dssp -SSTCHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999998764
No 10
>KOG0221 consensus Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=5.4e-39 Score=351.30 Aligned_cols=388 Identities=23% Similarity=0.299 Sum_probs=315.0
Q ss_pred ChHHHHHHHhcccccCC------CeecCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCCceeEEecCeE
Q 004463 25 FLTELEEKIGFCIDCKL------LIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQ---AGGIDKPLITKRRSRM 95 (752)
Q Consensus 25 ~~~~l~~~i~~~i~~~~------~~i~d~as~~L~~ir~~~~~~~~~l~~~l~~~~~~~~~---~~~~~~~~i~~r~~r~ 95 (752)
.+.++...|.++||-++ -.|.++.+|+|+++|+.+.. |..+|-+.+++... .-..+-..|.+---+|
T Consensus 385 ~l~eia~~~g~vIdF~~S~~~~r~Tv~~giD~elDE~r~~y~~----lp~~Lt~vAr~e~~~L~~~~psv~~VYIPliGf 460 (849)
T KOG0221|consen 385 DLHEIASLIGKVIDFEGSLAENRFTVLPGIDPELDEKRRRYMG----LPSFLTEVARKELENLDSRIPSVSVVYIPLIGF 460 (849)
T ss_pred HHHHHHHHhhheeccccccccceEEecCCCChHHHHHHHHHcc----chHHHHHHHHHHHHhhCCCCCceeEEEeeceee
Confidence 45667777788888554 25999999999999987665 44444444433222 1223444566666678
Q ss_pred EEEEecccccCCC----CcEEEEEcCCCCEEEecccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 004463 96 CVGIKASHKYLLP----DGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDR 171 (752)
Q Consensus 96 vl~vk~~~~~~~~----~g~v~~~s~sg~t~y~ep~~~v~lnn~~~~l~~~e~~ee~~il~~l~~~i~~~~~~l~~~~~~ 171 (752)
++-|...+.-... .||-.-+++ ...+|+....+.+|.+.+.++.-++..-|..|+..|..+|.+....+.+...+
T Consensus 461 llsiprl~~~~~~~d~~~~~~~mf~s-~E~l~~rnart~eLD~~~GDIy~~i~D~et~i~~~Lq~qvl~rk~~lt~~l~l 539 (849)
T KOG0221|consen 461 LLSIPRLPSMVEASDFENGLDFMFLS-EEKLHYRNARTKELDALLGDIYCEIRDQETLIMYQLQCQVLARKAVLTRVLDL 539 (849)
T ss_pred EEecccccchhhcCCcccchHHHhcc-cceeEeecccHHhHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777654433222 245444543 45677777788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcccccccCCCCCCCcceeeEccccCCccccccccccccccCCCCCCCCccCCCeEEEccccc
Q 004463 172 VLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSK 251 (752)
Q Consensus 172 ~~~lD~l~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~ls~ 251 (752)
.++||+++|+|..|.+++|++|.++++.. .+.|.++|||+++. ..+
T Consensus 540 aSrldvLls~a~~aa~~gy~~P~lv~e~~-----il~I~ngrh~l~e~-~~d---------------------------- 585 (849)
T KOG0221|consen 540 ASRLDVLLSLASAAADYGYSRPRLVPEVL-----ILRIQNGRHPLMEL-CAD---------------------------- 585 (849)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCccccHHH-----HHHHHcCChhHHHH-HHH----------------------------
Confidence 99999999999999999999999998642 47999999999842 111
Q ss_pred ccCCeeEeeeEEEc-cCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcc
Q 004463 252 GISDFPVPIDIKVE-CETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLS 330 (752)
Q Consensus 252 ~y~~~~v~idl~l~-~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~s 330 (752)
.+||++.++. .+.++.+|||||.||||.+||++||+++|+|+|+|||++. +.++..|+|+++|+..+++....|
T Consensus 586 ----tfvPNst~iggdkgri~vITGpNasGKSiYlkqvglivfLahIGsFVPAe~-A~IGivDrI~tri~s~esv~~gqS 660 (849)
T KOG0221|consen 586 ----TFVPNSTEIGGDKGRIKVITGPNASGKSIYLKQVGLIVFLAHIGSFVPAEE-AEIGIVDRIFTRIHSCESVSLGQS 660 (849)
T ss_pred ----hcCCCceeecCCCceEEEEeCCCCCCceEEEeechhhhHHHhhccccchhh-hhcchHHHHHHHhhhhhhhhhhhh
Confidence 3678888886 3349999999999999999999999999999999999997 899999999999999999999999
Q ss_pred cchHHHHHHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCc---EEEEEecchhHHhhh--cccccccC
Q 004463 331 TFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG---LAVVTTHYADLSCLK--DKDTRFEN 405 (752)
Q Consensus 331 tlSgg~krl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~---tviitTH~~~l~~~a--~~~~~i~~ 405 (752)
||.-...|++.++..|+..+|+|+||.|.||+..+|-.|..+++.++..+|. +|+++||+++|..+. ...+...-
T Consensus 661 TFmiD~~Qva~aLr~AT~~SLvlIDEfGKGT~tedGlsLlasvm~~w~~rg~~~PrifvcThfheL~ne~~L~~n~i~qf 740 (849)
T KOG0221|consen 661 TFMIDLNQVAKALRNATAQSLVLIDEFGKGTNTEDGLSLLASVMRHWLARGPTCPRIFVCTHFHELVNEQLLPQNPIVQF 740 (849)
T ss_pred HHHHhHHHHHHHHHHhhcCcEEEEhhccCCccccccHHHHHHHHHHHHhcCCCCCeEEEeccHHHhhhhccCCcchhhhh
Confidence 9999999999999999999999999999999999999999999999988764 599999999976531 11111211
Q ss_pred Ccee---eccCccccchhhccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHhhc
Q 004463 406 AATE---FSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLR 456 (752)
Q Consensus 406 g~v~---~~~~~l~~~Y~l~~g~~~~s~a~~ia~~~g~p~~ii~~A~~~~~~~~ 456 (752)
-.|. .+.+.+.+.|++..|....|+|+.+|+..|+|++++.||++......
T Consensus 741 ltm~vlr~~ge~I~flyrv~~gl~k~sfal~~ak~~glp~~vV~Ra~~v~~ai~ 794 (849)
T KOG0221|consen 741 LTMEVLREDGEDIVFLYRVCEGLAKASFALHTAKQAGLPDKVVARAKEVSDAIR 794 (849)
T ss_pred hhHHHHHhccCCeEEEEEeccchhhhcccchhHhhcCCCHHHHHHHHHHHHHHH
Confidence 2221 24567889999999999999999999999999999999999876543
No 11
>KOG0220 consensus Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=4.8e-38 Score=349.69 Aligned_cols=393 Identities=20% Similarity=0.324 Sum_probs=316.0
Q ss_pred hhHHHHHhcCC--ChHHHHHHHhcccccCC--------------CeecCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004463 14 SPLLELLKNCN--FLTELEEKIGFCIDCKL--------------LIILDRASEDLELIRAERKRNMENLDSLLKKVAAQI 77 (752)
Q Consensus 14 ~~l~~~~~~l~--~~~~l~~~i~~~i~~~~--------------~~i~d~as~~L~~ir~~~~~~~~~l~~~l~~~~~~~ 77 (752)
+.+.++...+. -+..+.+.|..+|+++. -.|+.+...-|+-.|+-+.++.+.....++++..++
T Consensus 392 ~~~~e~~~~~~~~r~~~i~~~i~e~I~dd~l~a~~~l~~~~qkcyAvks~i~~~LDiaR~ty~ei~~~~~~~i~~l~E~~ 471 (867)
T KOG0220|consen 392 NLLREYYGSFKDKRFGIILEKIKEVINDDALYAKGCLNLRTQKCYAVKSNINGFLDIARRTYTEIVDDIAGMISQLGEKF 471 (867)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhhHHHHhccchhhhhccceeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45555555553 44567888888998753 136667777888888887777655555555544332
Q ss_pred HHhcCCCCceeEEecC-eEEEEEecc----cccCCCCcEEEEEcCCCCEEEecccchhhhHHHHHHHhHHHHHHHHHHHH
Q 004463 78 FQAGGIDKPLITKRRS-RMCVGIKAS----HKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILS 152 (752)
Q Consensus 78 ~~~~~~~~~~i~~r~~-r~vl~vk~~----~~~~~~~g~v~~~s~sg~t~y~ep~~~v~lnn~~~~l~~~e~~ee~~il~ 152 (752)
.+.. ...+.+- +|++-++.. ....+| ..+.+.+....++-.....++.+|.++.+...++.-.-..++-
T Consensus 472 ----~~nl-~~~f~sarGF~~ri~~~~~~~~~~~lP-~~fi~~~~~~~~~~~~s~~~ik~N~Rlk~~~~E~~l~te~~v~ 545 (867)
T KOG0220|consen 472 ----SLNL-RLSFSSARGFFIRITTDCIALPSDTLP-SEFIKISKVKNSYSFTSADLIKMNERLKEVLREIFLMTEMIVC 545 (867)
T ss_pred ----Cccc-cccccccccEEEEeeccccccccccCc-hhhhhhhhhcceeeechHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1112222 566666554 345677 3455555545555566777889999988776666666667899
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCCCCCcceeeEccccCCccccccccccccccCCC
Q 004463 153 LLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNS 232 (752)
Q Consensus 153 ~l~~~i~~~~~~l~~~~~~~~~lD~l~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~ 232 (752)
.|.+.|..+...+..+.+++.-||+++++|......++++|.|++. +.|.+||||+|++-+.
T Consensus 546 ~lld~i~~~I~~L~~iae~~~~lD~l~sfa~~~~~~~y~~P~fT~s--------laI~qGRHPILe~i~~---------- 607 (867)
T KOG0220|consen 546 KLLDEIYEHISCLYKLAEAVSMLDMLCSFAHACTLSDYVRPEFTDS--------LAIKQGRHPILEKISA---------- 607 (867)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCc--------eeeccCCCchhhhhcc----------
Confidence 9999999999999999999999999999999998889999999984 8999999999964321
Q ss_pred CCCCCccCCCeEEEcccccccCCeeEeeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHH
Q 004463 233 NPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWF 312 (752)
Q Consensus 233 ~~~~~~~g~~~l~~~~ls~~y~~~~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~ 312 (752)
++++.++..+.++.++.+||||||+||||+||+++++++|||+|+|+|+.- +.+++|
T Consensus 608 ----------------------ek~i~N~t~~t~~s~f~IITGPNMsGKSTYLKQvAl~~IMAQIGc~IPA~Y-aS~pIf 664 (867)
T KOG0220|consen 608 ----------------------EKPIANNTYVTEGSNFLIITGPNMSGKSTYLKQVALCQIMAQIGSYVPAEY-ASFRVF 664 (867)
T ss_pred ----------------------cCcccCcceeecccceEEEECCCCCcchHHHHHHHHHHHHHHhccCcchhh-ccchHH
Confidence 136667777777879999999999999999999999999999999999985 899999
Q ss_pred HHHHHHcCCchhhhcCcccchHHHHHHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh
Q 004463 313 DLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 392 (752)
Q Consensus 313 d~i~~~ig~~~~i~~~~stlSgg~krl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~ 392 (752)
++||++||-.|.+.++-|+|..+|+..+.|+..+++.+||+|||.++||..++|.++.+|+++++..-..+++++||+.+
T Consensus 665 ~RIFtRmg~nDele~NsS~F~sEMke~A~Ilq~a~~~SLiVlDELgR~TSteeGiaityAvCE~lL~LkayTflATHFld 744 (867)
T KOG0220|consen 665 KRIFTRMGTNDELERNSSTFMSEMKEAAYILQNANKNSLIVLDELGRGTSTEEGIAITYAVCEYLLSLKAYTFLATHFLD 744 (867)
T ss_pred HHHHHHhcCchhhhhchhHHHHHHHHHHHHHHhCCcCcEEEEhhhccCCccccchhhHHHHHHHHHHhhHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccccCCceeecc--Ccccc-chhhccCC-CCCchHHHHHHHcCCCHHHHHHHHHHHH
Q 004463 393 LSCLKDKDTRFENAATEFSL--ETLRP-TYRILWGS-TGDSNALNIAKSIGFDRKIIQRAQKLVE 453 (752)
Q Consensus 393 l~~~a~~~~~i~~g~v~~~~--~~l~~-~Y~l~~g~-~~~s~a~~ia~~~g~p~~ii~~A~~~~~ 453 (752)
++.++...+.+.|-++..+. .+... .|++..|. .+..|+++.++..-+|+++++.|+.+.-
T Consensus 745 Ia~lan~~paVdnlHF~~q~~eNssk~~k~kLsrg~~~~~~yG~~~vE~s~iPd~i~e~a~~~~t 809 (867)
T KOG0220|consen 745 IAAIANYYPAVDNLHFLVQTDENSSKNKKYKLSRGLTEEKNYGLKAAEVSSLPDSIVEDAKEITT 809 (867)
T ss_pred HHHHhhcCccccceeeeeeecccchhhhhhhhhhhhhhcccccceEEEEecCCHHHHHhhhHHHH
Confidence 99999999999998875542 22222 58888875 4668999999999999999998887654
No 12
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=3.4e-37 Score=317.73 Aligned_cols=196 Identities=29% Similarity=0.506 Sum_probs=177.1
Q ss_pred eEeeeE--EEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchH
Q 004463 257 PVPIDI--KVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG 334 (752)
Q Consensus 257 ~v~idl--~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSg 334 (752)
+|++|+ ....+ ++++|+|||||||||||+++|++.+|+|+|+|+|+.. ..++.++.++..+++.+++.+.+|+||.
T Consensus 18 ~v~~~~~~~~~~~-~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~-~~~~~~~~il~~~~l~d~~~~~lS~~~~ 95 (222)
T cd03285 18 FIPNDVTLTRGKS-RFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDS-ADIPIVDCILARVGASDSQLKGVSTFMA 95 (222)
T ss_pred eEEeeEEEeecCC-eEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCccc-EEEeccceeEeeeccccchhcCcChHHH
Confidence 565444 44456 8999999999999999999999999999999999986 7899999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhcccccccCCceeecc-
Q 004463 335 HISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFSL- 412 (752)
Q Consensus 335 g~krl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~~- 412 (752)
++++++.++..+++|+|||||||++||++.++.++++++++++.+ .++++|++||+.++..+|++...+.++++.++.
T Consensus 96 e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 96 EMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 999988888778999999999999999999999999988898875 478999999998899999999999999987653
Q ss_pred ---CccccchhhccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHh
Q 004463 413 ---ETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVER 454 (752)
Q Consensus 413 ---~~l~~~Y~l~~g~~~~s~a~~ia~~~g~p~~ii~~A~~~~~~ 454 (752)
+.+.|+|++..|.++.|||+.+|+..|+|++++++|+++...
T Consensus 176 ~~~~~~~~~Y~l~~G~~~~s~a~~~a~~~g~p~~vi~~A~~~~~~ 220 (222)
T cd03285 176 DASRTLTMLYKVEKGACDQSFGIHVAELANFPKEVIEMAKQKALE 220 (222)
T ss_pred CCCCcEeEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHh
Confidence 678899999999999999999999999999999999987653
No 13
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.8e-37 Score=318.17 Aligned_cols=190 Identities=31% Similarity=0.518 Sum_probs=173.7
Q ss_pred eEeeeEEE--ccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchH
Q 004463 257 PVPIDIKV--ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG 334 (752)
Q Consensus 257 ~v~idl~l--~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSg 334 (752)
+|++|+.+ ..+ ++++|+||||+||||+|+++|++.+|||+|+|||++. ..+++|++|+++++..|++..+.|+|+.
T Consensus 18 ~v~ndi~l~~~~~-~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~-~~i~~~~~i~~~~~~~d~~~~~~StF~~ 95 (218)
T cd03286 18 FVPNDVDLGATSP-RILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKS-MRLSLVDRIFTRIGARDDIMKGESTFMV 95 (218)
T ss_pred eEEeeeEEeecCC-cEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccc-cEeccccEEEEecCcccccccCcchHHH
Confidence 66655555 456 8999999999999999999999999999999999996 7899999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcC-CcEEEEEecchhHHhhhcccccccCCceeecc-
Q 004463 335 HISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEFSL- 412 (752)
Q Consensus 335 g~krl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~-~~tviitTH~~~l~~~a~~~~~i~~g~v~~~~- 412 (752)
++++++.++..+++|+|+|||||++||||.++.+++.+++++|.+. ++++|++||++++.........+.+.+|.++.
T Consensus 96 e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~~~~~v~~~~m~~~~~ 175 (218)
T cd03286 96 ELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFHEHGGVRLGHMACAVK 175 (218)
T ss_pred HHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhhcCcceEEEEEEEEEe
Confidence 9999999999999999999999999999999999999999999987 89999999999987765555667788887643
Q ss_pred -------CccccchhhccCCCCCchHHHHHHHcCCCHHHHHHH
Q 004463 413 -------ETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRA 448 (752)
Q Consensus 413 -------~~l~~~Y~l~~g~~~~s~a~~ia~~~g~p~~ii~~A 448 (752)
+++.|+|++..|.++.|||+.+|+++|+|++++++|
T Consensus 176 ~~~~~~~~~~~~~Ykl~~G~~~~s~al~~A~~~g~p~~vi~rA 218 (218)
T cd03286 176 NESDPTIRDITFLYKLVAGICPKSYGLYVALMAGIPDGVVERA 218 (218)
T ss_pred ccccCCCCceEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 578999999999999999999999999999999876
No 14
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=5.6e-36 Score=344.19 Aligned_cols=373 Identities=19% Similarity=0.250 Sum_probs=298.3
Q ss_pred eecC--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeEEecCeEEEEEecccccCCCCcEEEEEcCCCC
Q 004463 43 IILD--RASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGA 120 (752)
Q Consensus 43 ~i~d--~as~~L~~ir~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~r~~r~vl~vk~~~~~~~~~g~v~~~s~sg~ 120 (752)
.|-| +++.+++..-+.++++.+.|..+|.....++-- -.-.++++--+.|.|.|..+....++-.|+...+..|.
T Consensus 705 ~i~P~~Gfd~eyD~a~k~~~e~e~~L~~~L~~~rk~l~c---~si~~~~vGk~~y~lEvP~n~~~~s~~~~~~~S~~Kg~ 781 (1125)
T KOG0217|consen 705 VIVPLEGFDEEYDEAMKRVDEAENELLAYLEEYRKRLGC---SSIVFVDVGKDVYQLEVPENGGVPSSLRYELMSAKKGV 781 (1125)
T ss_pred ccCCCccccHHHHHHhhHHHHHHHHHHHHHHHHHHhcCC---CceeEeecCceEEEEecCcccCCCCchHHHHHHhhcCc
Confidence 4555 568889999888888888888888764433111 00123444445899999998887776557888888999
Q ss_pred EEEecccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cccccccCC
Q 004463 121 TYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMD--GVCPILSSQ 198 (752)
Q Consensus 121 t~y~ep~~~v~lnn~~~~l~~~e~~ee~~il~~l~~~i~~~~~~l~~~~~~~~~lD~l~a~a~~a~~~~--~~~P~~~~~ 198 (752)
..|+.|. +-.+-..+.+.+.....-.....+++...+..+....+.....++.|||++++|.+|+-++ .|+|.+.++
T Consensus 782 ~RY~tp~-~~kli~~l~~aee~~~~~~~d~~~r~~~~f~~~~~~w~~tv~~~a~iD~l~sla~~s~~~~~~~Crp~i~~~ 860 (1125)
T KOG0217|consen 782 SRYYTPD-LRKLIAHLDEAEERKKSSLSDLKRRLIVRFDEHYIIWQATVKALASIDCLLSLAETSKGLGGPMCRPEIVES 860 (1125)
T ss_pred ccccCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccceeecc
Confidence 9999995 2222222222222112223367777888888888889999999999999999999998766 699998875
Q ss_pred CCCCCcceeeEccccCCccccccccccccccCCCCCCCCccCCCeEEEcccccccCCeeEeeeEEEc-cC-ceEEEEEcC
Q 004463 199 SHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVE-CE-TRVVVITGP 276 (752)
Q Consensus 199 ~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~ls~~y~~~~v~idl~l~-~g-~~~~~I~Gp 276 (752)
. +++..+.+.+.|||.+..... ++.++|+++.+. .+ ..+.++|||
T Consensus 861 ~--dt~~~l~~~~~~Hpcfsl~s~-------------------------------~~~fipN~v~~g~~~e~~~~llTGp 907 (1125)
T KOG0217|consen 861 T--DTPGFLIVKGLRHPCFSLPST-------------------------------GTSFIPNDVELGGAEENREGLLTGP 907 (1125)
T ss_pred c--CCCceeEEecccCceeecCcC-------------------------------CCccccchhhccccccceeeeeccC
Confidence 3 223368999999999853211 113678888886 22 245569999
Q ss_pred CCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHHHHHHHHHccCCCcEEEEeC
Q 004463 277 NTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDE 356 (752)
Q Consensus 277 NGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~krl~~i~~la~~~~LlLLDE 356 (752)
|++|||||||++++.++|||+|++||+.. ..++.+|.|++++|..+.+-.+.|||..+....+.|+..+++.+||++||
T Consensus 908 NmgGKSTllRq~c~~vilaq~G~~VPa~~-~~~tpidrI~tRlGA~D~im~g~STF~vELsET~~IL~~aT~~SLvi~DE 986 (1125)
T KOG0217|consen 908 NMGGKSTLLRQACIAVILAQIGCDVPAEV-MELTPIDRIFTRLGANDDIMSGESTFFVELSETKKILKHATRHSLVIVDE 986 (1125)
T ss_pred CcCCchHHHHHHHHHHHHHHhCCCccHHH-hcccchHHHhhhcccccchhcCCceEEEeccchHHHHhhcCccceeeehh
Confidence 99999999999999999999999999996 78999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhcccccccCCcee--eccCc-cccchhhccCCCCCchHH
Q 004463 357 IGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATE--FSLET-LRPTYRILWGSTGDSNAL 432 (752)
Q Consensus 357 p~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~l~~~a~~~~~i~~g~v~--~~~~~-l~~~Y~l~~g~~~~s~a~ 432 (752)
.++||.+-+|.+|+.+++++|.. ..+..+++|||+.+.....+.+.+..++|. .+.+. ..++|++..|.+++||++
T Consensus 987 LGRGtst~DG~aIA~aVLe~l~~~i~c~~fFSTHYhsl~~~~~~~p~Vrl~~Ma~~vd~e~~vtFLYkl~~G~cpkSyG~ 1066 (1125)
T KOG0217|consen 987 LGRGTSTFDGTAIAEAVLEHLSEGIQCLGFFSTHYHSLCVDFMHHPQVRLLHMACVVDEEIDVTFLYKLEEGICPKSYGF 1066 (1125)
T ss_pred hcCcccccCCcchHHHHHHHHHhcccccCCccccccchhHhhhcCccccchhheeeecCCccEEEeehhccCCCCcchhH
Confidence 99999999999999999999998 477899999999998877777777777774 34444 889999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHH
Q 004463 433 NIAKSIGFDRKIIQRAQKLVE 453 (752)
Q Consensus 433 ~ia~~~g~p~~ii~~A~~~~~ 453 (752)
.+|+.+|+|..|+++|.....
T Consensus 1067 ~vArmaglp~~vi~~a~~~a~ 1087 (1125)
T KOG0217|consen 1067 NVARMAGLPDQVIDRAEIKAH 1087 (1125)
T ss_pred HHHHhcCCcHHHHHHHHHHHH
Confidence 999999999999999976554
No 15
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=100.00 E-value=3.5e-37 Score=312.77 Aligned_cols=185 Identities=54% Similarity=0.828 Sum_probs=172.8
Q ss_pred eeEeeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHH
Q 004463 256 FPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGH 335 (752)
Q Consensus 256 ~~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg 335 (752)
.++++||++..|.++++|+||||||||||||++|++.+++|+|+++|+.....+++|++++..++..+++...+|+||+|
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~~~~l~~~~s~fs~g 95 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFSSH 95 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCchhhhhcCcchHHHH
Confidence 37899999998855899999999999999999999999999999999987678889999999999999999999999999
Q ss_pred HHHHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeeccCcc
Q 004463 336 ISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETL 415 (752)
Q Consensus 336 ~krl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~~~~l 415 (752)
|+++..+...+.+|+++|+|||++|||+..+..++..+++.+.+.+.++|++||+.++..++++...+.+|++.++.+++
T Consensus 96 ~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~~~~ 175 (200)
T cd03280 96 MKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDPETL 175 (200)
T ss_pred HHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEecCcc
Confidence 99877777668999999999999999999999998878888888889999999998888999999999999999999999
Q ss_pred ccchhhccCCCCCchHHHHHHHcCC
Q 004463 416 RPTYRILWGSTGDSNALNIAKSIGF 440 (752)
Q Consensus 416 ~~~Y~l~~g~~~~s~a~~ia~~~g~ 440 (752)
.++|++..|.++.|||+++|+++|+
T Consensus 176 ~~~ykl~~G~~~~s~a~~~a~~~g~ 200 (200)
T cd03280 176 KPTYRLLIGVPGRSNALEIARRLGL 200 (200)
T ss_pred cEEEEEeECCCCCcHHHHHHHHcCC
Confidence 9999999999999999999999985
No 16
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1e-36 Score=313.39 Aligned_cols=188 Identities=31% Similarity=0.547 Sum_probs=170.6
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHHH
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISR 338 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~kr 338 (752)
++++.+..| ++++|+||||+||||+||+++++.+|+++|+++|+.. ..+++|++|+++++..|++..+.|+|+.++++
T Consensus 23 ~i~~~~~~g-~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~-~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~ 100 (222)
T cd03287 23 DIHLSAEGG-YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASS-ATLSIFDSVLTRMGASDSIQHGMSTFMVELSE 100 (222)
T ss_pred eEEEEecCC-cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCc-eEEeccceEEEEecCccccccccchHHHHHHH
Confidence 556666677 8999999999999999999999999999999999986 78999999999999999999999999999999
Q ss_pred HHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcC-CcEEEEEecchhHHhhhccc-ccccCCceeec-----
Q 004463 339 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKD-TRFENAATEFS----- 411 (752)
Q Consensus 339 l~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~-~~tviitTH~~~l~~~a~~~-~~i~~g~v~~~----- 411 (752)
++.++..+++++|+|||||++|||+.++.+++.++++++.+. ++++|++||++++..+.... ..+.+.+|.++
T Consensus 101 ~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~~~~~~~v~~~~~~~~~~~~~ 180 (222)
T cd03287 101 TSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEILRRFEGSIRNYHMSYLESQKD 180 (222)
T ss_pred HHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHHHhcccCeEEEEEEEEEeccc
Confidence 999999999999999999999999999999999999999987 88999999999998876542 23566666543
Q ss_pred -----cCccccchhhccCCCCCchHHHHHHHcCCCHHHHHHH
Q 004463 412 -----LETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRA 448 (752)
Q Consensus 412 -----~~~l~~~Y~l~~g~~~~s~a~~ia~~~g~p~~ii~~A 448 (752)
.+.+.|+|++..|.++.|||+.+|+..|+|++++++|
T Consensus 181 ~~~~~~~~l~~~Ykl~~G~~~~s~a~~~a~~~g~p~~vi~rA 222 (222)
T cd03287 181 FETSDSQSITFLYKLVRGLASRSFGLNVARLAGLPKSIISRA 222 (222)
T ss_pred cccccCCcEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 2468899999999999999999999999999999876
No 17
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=100.00 E-value=1.6e-35 Score=304.18 Aligned_cols=194 Identities=29% Similarity=0.507 Sum_probs=179.9
Q ss_pred eEeeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHH
Q 004463 257 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHI 336 (752)
Q Consensus 257 ~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~ 336 (752)
+|++|+.+..+.++++|+||||||||||||++|++.+|+++|+++|+.. ..++++++++..++..+++..+.|+|..++
T Consensus 19 ~v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~-~~i~~~~~i~~~~~~~~~ls~g~s~f~~e~ 97 (216)
T cd03284 19 FVPNDTELDPERQILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASK-AEIGVVDRIFTRIGASDDLAGGRSTFMVEM 97 (216)
T ss_pred eEeeeEEecCCceEEEEECCCCCChHHHHHHHHHHHHHhccCCeecccc-ceecceeeEeccCCchhhhccCcchHHHHH
Confidence 5788888776558999999999999999999999999999999999986 689999999999999999999999999999
Q ss_pred HHHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcC-CcEEEEEecchhHHhhhcccccccCCceee--ccC
Q 004463 337 SRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEF--SLE 413 (752)
Q Consensus 337 krl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~-~~tviitTH~~~l~~~a~~~~~i~~g~v~~--~~~ 413 (752)
.+++.++..+++|+|||||||++||++.++..+..++++++.+. ++++|++||+.++..+++....+.+++|.+ +.+
T Consensus 98 ~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~ 177 (216)
T cd03284 98 VETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGG 177 (216)
T ss_pred HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCC
Confidence 99999999999999999999999999999999888899999887 899999999999999999888899999877 457
Q ss_pred ccccchhhccCCCCCchHHHHHHHcCCCHHHHHHHHHH
Q 004463 414 TLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKL 451 (752)
Q Consensus 414 ~l~~~Y~l~~g~~~~s~a~~ia~~~g~p~~ii~~A~~~ 451 (752)
.+.++|++..|.++.|||+.+|++.|+|++++++|+++
T Consensus 178 ~l~~~ykl~~G~~~~s~a~~~a~~~g~~~~ii~rA~~~ 215 (216)
T cd03284 178 GVVFLHKIVEGAADKSYGIEVARLAGLPEEVIERAREI 215 (216)
T ss_pred eEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHHHHHHh
Confidence 78999999999999999999999999999999999875
No 18
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=8.8e-35 Score=298.00 Aligned_cols=184 Identities=29% Similarity=0.451 Sum_probs=166.0
Q ss_pred eeEeeeEEEccCc-eEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchH
Q 004463 256 FPVPIDIKVECET-RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG 334 (752)
Q Consensus 256 ~~v~idl~l~~g~-~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSg 334 (752)
.+||+|+.++.+. ++++|+||||+|||||||++|++.+|+++|+++|+.. ..+++|++++..++..+++....|+|+.
T Consensus 16 ~~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~-~~~~~~d~i~~~l~~~~si~~~~S~f~~ 94 (213)
T cd03281 16 SFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADS-ATIGLVDKIFTRMSSRESVSSGQSAFMI 94 (213)
T ss_pred ceEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCC-cEEeeeeeeeeeeCCccChhhccchHHH
Confidence 3789999998764 7899999999999999999999999999999999986 7899999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcC---CcEEEEEecchhHHhhhc--ccccccCCcee
Q 004463 335 HISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR---VGLAVVTTHYADLSCLKD--KDTRFENAATE 409 (752)
Q Consensus 335 g~krl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~---~~tviitTH~~~l~~~a~--~~~~i~~g~v~ 409 (752)
++++++.++.++.+|+|+|||||++||||.++.+++.++++++.+. +.++|++||++++..... ....+.+.+|.
T Consensus 95 el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~~~~~~~~~~~~~~ 174 (213)
T cd03281 95 DLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSLLPERLKIKFLTME 174 (213)
T ss_pred HHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhhhccCCceEEEEEE
Confidence 9999999999999999999999999999999999998899998765 258999999999777553 44567777876
Q ss_pred e--c------cCccccchhhccCCCCCchHHHHHHHcCC
Q 004463 410 F--S------LETLRPTYRILWGSTGDSNALNIAKSIGF 440 (752)
Q Consensus 410 ~--~------~~~l~~~Y~l~~g~~~~s~a~~ia~~~g~ 440 (752)
+ + .+.+.|+|++..|.++.|||+++|++.|+
T Consensus 175 ~~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~a~~~g~ 213 (213)
T cd03281 175 VLLNPTSTSPNEDITYLYRLVPGLADTSFAIHCAKLAGI 213 (213)
T ss_pred EEEcCCccCCCCcEEEEEEEeeCCCCCCHHHHHHHHcCC
Confidence 6 3 36789999999999999999999999985
No 19
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.5e-34 Score=294.09 Aligned_cols=179 Identities=27% Similarity=0.523 Sum_probs=162.1
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHHH
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISR 338 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~kr 338 (752)
++++....| ++++|+||||+||||+||+++.+++|+|+|+++|+.. ..++++++++..++..+++.++.|+||.|+++
T Consensus 21 ~~~~~~~~~-~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~-~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~ 98 (204)
T cd03282 21 DIYLTRGSS-RFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEY-ATLPIFNRLLSRLSNDDSMERNLSTFASEMSE 98 (204)
T ss_pred eeEEeeCCC-cEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhh-cCccChhheeEecCCccccchhhhHHHHHHHH
Confidence 666666777 8999999999999999999999999999999999986 78999999999999999999999999999999
Q ss_pred HHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec---cCcc
Q 004463 339 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS---LETL 415 (752)
Q Consensus 339 l~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~---~~~l 415 (752)
+..+..++++|+|+|||||++||||.++..+..++++++.+.+.++|++||+.++..++.....+.+.+|... .+.+
T Consensus 99 ~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 178 (204)
T cd03282 99 TAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILGNKSCVVHLHMKAQSINSNGI 178 (204)
T ss_pred HHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhhcCCCeEEEEEEEEEcCCCce
Confidence 9999999999999999999999999999999999999999999999999999998887665555666666554 2678
Q ss_pred ccchhhccCCCC-CchHHHHHHHcC
Q 004463 416 RPTYRILWGSTG-DSNALNIAKSIG 439 (752)
Q Consensus 416 ~~~Y~l~~g~~~-~s~a~~ia~~~g 439 (752)
.++|++..|.+. .|||+.+|+.+.
T Consensus 179 ~~~ykl~~G~~~~~~~g~~~a~~~~ 203 (204)
T cd03282 179 EMAYKLVLGLYRIVDDGIRFVRVLA 203 (204)
T ss_pred eeEEEEeeCCCCCCccHHHHHHHhh
Confidence 899999999999 999999999763
No 20
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=2e-34 Score=289.14 Aligned_cols=181 Identities=38% Similarity=0.656 Sum_probs=168.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHHHHHHHHHccCCC
Q 004463 270 VVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRE 349 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~krl~~i~~la~~~ 349 (752)
+++||||||||||||||++|++.+|+|+|+++|+.. +.++++++++..++..+++.++.|+||+++++++.++..+++|
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~-~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~ 79 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAES-AELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATEN 79 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehh-eEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCC
Confidence 478999999999999999999999999999999987 8999999999999999999999999999999999999889999
Q ss_pred cEEEEeCCCCCCChHhHHHHHHHHHHHHhcC-CcEEEEEecchhHHhhhcccccccCCceeecc--CccccchhhccCCC
Q 004463 350 SLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEFSL--ETLRPTYRILWGST 426 (752)
Q Consensus 350 ~LlLLDEp~~glD~~~~~~L~~all~~l~~~-~~tviitTH~~~l~~~a~~~~~i~~g~v~~~~--~~l~~~Y~l~~g~~ 426 (752)
+|+|+|||++||||.++..+..++++++.+. ++++|++||++++..+++....+.+.+|.+.. +.+.++|++..|.+
T Consensus 80 ~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~Y~l~~G~~ 159 (185)
T smart00534 80 SLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPGVRNLHMSADEETENLTFLYKLTPGVA 159 (185)
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCccceEEEEEEEEecCceeEEEEEeECCC
Confidence 9999999999999999999998899998874 88999999999999999887788888887654 35889999999999
Q ss_pred CCchHHHHHHHcCCCHHHHHHHHHH
Q 004463 427 GDSNALNIAKSIGFDRKIIQRAQKL 451 (752)
Q Consensus 427 ~~s~a~~ia~~~g~p~~ii~~A~~~ 451 (752)
+.|||+.+|+..|+|++++++|++.
T Consensus 160 ~~s~a~~~a~~~g~~~~i~~~a~~~ 184 (185)
T smart00534 160 GKSYGIEVAKLAGLPKEVIERAKEI 184 (185)
T ss_pred CCcHHHHHHHHhCCCHHHHHHHHHh
Confidence 9999999999999999999999864
No 21
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=100.00 E-value=1.2e-33 Score=287.32 Aligned_cols=182 Identities=35% Similarity=0.584 Sum_probs=169.4
Q ss_pred eEeeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHH
Q 004463 257 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHI 336 (752)
Q Consensus 257 ~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~ 336 (752)
++++|+++..| ++++|+||||||||||||+|+...+++++|.++|+.. ..++++++++..++..+++....|+|+.++
T Consensus 19 ~~~~~~~l~~~-~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~-~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~ 96 (202)
T cd03243 19 FVPNDINLGSG-RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAES-ASIPLVDRIFTRIGAEDSISDGRSTFMAEL 96 (202)
T ss_pred eEeeeEEEcCC-eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccc-cccCCcCEEEEEecCcccccCCceeHHHHH
Confidence 67999999998 9999999999999999999988888999999999986 688889999999999999999999999999
Q ss_pred HHHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeeccC--c
Q 004463 337 SRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLE--T 414 (752)
Q Consensus 337 krl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~~~--~ 414 (752)
+++..++.++.+|+++|||||++||||..+..+...+++.+.+.+.++|++||+.++...+++...+.+++|..+.+ .
T Consensus 97 ~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 97 LELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCe
Confidence 99999999999999999999999999999999988888888888899999999999988888888888888887654 6
Q ss_pred cccchhhccCCCCCchHHHHHHHcCC
Q 004463 415 LRPTYRILWGSTGDSNALNIAKSIGF 440 (752)
Q Consensus 415 l~~~Y~l~~g~~~~s~a~~ia~~~g~ 440 (752)
+.++|++..|.+..|||+++|+++|+
T Consensus 177 ~~~~ykl~~g~~~~~~a~~~~~~~g~ 202 (202)
T cd03243 177 LTFTYKLIDGICDPSYALQIAELAGL 202 (202)
T ss_pred eeEEEEEeECCCCCcHHHHHHHHcCC
Confidence 89999999999999999999999985
No 22
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.9e-30 Score=304.03 Aligned_cols=169 Identities=22% Similarity=0.252 Sum_probs=135.0
Q ss_pred CCCeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh---------hhceeecCCCC-
Q 004463 240 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS---------KAGLYLPAKNH- 306 (752)
Q Consensus 240 g~~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a---------q~G~~vP~~~~- 306 (752)
|+.|++++||++.|++..+ ++||+|.+| ++++|+||||||||||||+| |++.+.. ++ .|+|+...
T Consensus 309 ~~~~l~~~~l~~~y~~~~il~~isl~i~~G-e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i-gy~~Q~~~~ 386 (638)
T PRK10636 309 PNPLLKMEKVSAGYGDRIILDSIKLNLVPG-SRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKL-GYFAQHQLE 386 (638)
T ss_pred CCceEEEEeeEEEeCCeeeeccceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEE-EEecCcchh
Confidence 3457899999999988766 999999999 99999999999999999999 6654311 12 35565421
Q ss_pred ---CCchH---------------HHHHHHHcCCc-hhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhH
Q 004463 307 ---PRLPW---------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 366 (752)
Q Consensus 307 ---~~l~~---------------~d~i~~~ig~~-~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~ 366 (752)
...++ +..++..++.. +..++++++|||||+ |++++++++.+|+||||||||+|||+...
T Consensus 387 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~ 466 (638)
T PRK10636 387 FLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMR 466 (638)
T ss_pred hCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 11111 22345667775 467899999999999 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeeccCc
Q 004463 367 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLET 414 (752)
Q Consensus 367 ~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~~~~ 414 (752)
..|...+.++ ++|||+||||++ +..+|++++.+.+|.+....++
T Consensus 467 ~~l~~~L~~~----~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~ 511 (638)
T PRK10636 467 QALTEALIDF----EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGD 511 (638)
T ss_pred HHHHHHHHHc----CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCC
Confidence 9999966654 469999999988 5569999999999998744343
No 23
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.97 E-value=3.4e-31 Score=268.80 Aligned_cols=181 Identities=29% Similarity=0.439 Sum_probs=157.8
Q ss_pred eEeeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHH
Q 004463 257 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHI 336 (752)
Q Consensus 257 ~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~ 336 (752)
+|++|+++..| ++++|+||||||||||||+|+...+++++|.++|+.. ..++ ++.+|..+...+++....+.|..++
T Consensus 15 ~v~n~i~l~~g-~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~-~~~q-~~~l~~~~~~~d~l~~~~s~~~~e~ 91 (199)
T cd03283 15 RVANDIDMEKK-NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASS-FELP-PVKIFTSIRVSDDLRDGISYFYAEL 91 (199)
T ss_pred eecceEEEcCC-cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCc-cCcc-cceEEEeccchhccccccChHHHHH
Confidence 67899999999 9999999999999999999988888999999999875 5666 6778888888888888888888788
Q ss_pred HHHHHHHHccC--CCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCce--eecc
Q 004463 337 SRIVDILELVS--RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAAT--EFSL 412 (752)
Q Consensus 337 krl~~i~~la~--~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v--~~~~ 412 (752)
+++..++..+. +|+++|||||++|||+.++..+..++++.+.+.+.++|++||++++....+....+.+.++ .++.
T Consensus 92 ~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~~~~~~~~~ 171 (199)
T cd03283 92 RRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNYHFREDIDD 171 (199)
T ss_pred HHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEEEEEEEEEC
Confidence 88999888888 9999999999999999999988877888888878999999999998776655555555544 3455
Q ss_pred CccccchhhccCCCCCchHHHHHHHcCC
Q 004463 413 ETLRPTYRILWGSTGDSNALNIAKSIGF 440 (752)
Q Consensus 413 ~~l~~~Y~l~~g~~~~s~a~~ia~~~g~ 440 (752)
+.+.++|++.+|.++.|+|+.+|++.|+
T Consensus 172 ~~~~~~y~~~~G~~~~s~~~~~a~~~g~ 199 (199)
T cd03283 172 NKLIFDYKLKPGVSPTRNALRLMKKIGI 199 (199)
T ss_pred CeeeEEEEeCCCCCCCcHHHHHHHHcCC
Confidence 7789999999999999999999999885
No 24
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=3.4e-30 Score=293.79 Aligned_cols=299 Identities=18% Similarity=0.197 Sum_probs=208.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCceeEEecCeEEEEEecccccCCCCcEEEEEcCCCCEEEecccchhhhHHHHHHHhH
Q 004463 62 NMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSN 141 (752)
Q Consensus 62 ~~~~l~~~l~~~~~~~~~~~~~~~~~i~~r~~r~vl~vk~~~~~~~~~g~v~~~s~sg~t~y~ep~~~v~lnn~~~~l~~ 141 (752)
...||+++|+. +.+++|.++||||||.-.+.+...+..|.+..|.+ |+..|++..+. ....+.
T Consensus 188 ~i~WLe~~L~~----------~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~G-ny~~~~~~r~~------~~~~~~ 250 (530)
T COG0488 188 SIEWLEDYLKR----------YPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKG-NYSSYLEQKAE------RLRQEA 250 (530)
T ss_pred HHHHHHHHHHh----------CCCcEEEEeCCHHHHHHHhhheEEecCCceeEecC-CHHHHHHHHHH------HHHHHH
Confidence 36899999876 44689999999999999998888888888888987 89999887522 112222
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCCCCCcceeeEccccCCcccccc
Q 004463 142 SEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSS 221 (752)
Q Consensus 142 ~e~~ee~~il~~l~~~i~~~~~~l~~~~~~~~~lD~l~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~ 221 (752)
+..+..++-++++..+|..........-.+-+++..+..+-.- ....+|.-.... ..+.+...+++
T Consensus 251 ~~~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~---~~~~~~~~~~~~-----~~~~f~~~~~~------ 316 (530)
T COG0488 251 AAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEAR---LAEERPVEEGKP-----LAFRFPPPGKR------ 316 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhh---hhhccccccccc-----ceeeccCCccc------
Confidence 2333345667777777777666655544444444433332211 011122211110 01233322221
Q ss_pred ccccccccCCCCCCCCccCCCeEEEcccccccCCe-eE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh--
Q 004463 222 LRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDF-PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-- 295 (752)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~g~~~l~~~~ls~~y~~~-~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a-- 295 (752)
.|+.+++++|++++|++. ++ +++|.+.+| +.++|+||||+|||||||+| |.+....
T Consensus 317 -----------------~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g-~riaiiG~NG~GKSTLlk~l~g~~~~~~G~ 378 (530)
T COG0488 317 -----------------LGKLVLEFENVSKGYDGGRLLLKDLSFRIDRG-DRIAIVGPNGAGKSTLLKLLAGELGPLSGT 378 (530)
T ss_pred -----------------CCCeeEEEeccccccCCCceeecCceEEecCC-CEEEEECCCCCCHHHHHHHHhhhcccCCce
Confidence 144578899999999764 55 999999999 89999999999999999999 5443320
Q ss_pred -------hhceeecCCCC---CCchHH---------------HHHHHHcCC-chhhhcCcccchHHHH-HHHHHHHccCC
Q 004463 296 -------KAGLYLPAKNH---PRLPWF---------------DLILADIGD-HQSLEQNLSTFSGHIS-RIVDILELVSR 348 (752)
Q Consensus 296 -------q~G~~vP~~~~---~~l~~~---------------d~i~~~ig~-~~~i~~~~stlSgg~k-rl~~i~~la~~ 348 (752)
++ .|.+|... ...+++ ...+.+|+. .+...+++.+||||+| |+.+++.++.+
T Consensus 379 v~~g~~v~i-gyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~ 457 (530)
T COG0488 379 VKVGETVKI-GYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQP 457 (530)
T ss_pred EEeCCceEE-EEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccC
Confidence 11 24444331 111222 234555654 3566899999999999 99999999999
Q ss_pred CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeeccCcc
Q 004463 349 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLETL 415 (752)
Q Consensus 349 ~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~~~~l 415 (752)
|+|||||||||+||+.+..+|..++.+| .+|||+||||.+ +..+|++++.+.+ .+....+++
T Consensus 458 pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y 520 (530)
T COG0488 458 PNLLLLDEPTNHLDIESLEALEEALLDF----EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGY 520 (530)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCH
Confidence 9999999999999999999999988888 899999999998 5669999999987 665554443
No 25
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.97 E-value=2.1e-30 Score=269.14 Aligned_cols=167 Identities=21% Similarity=0.293 Sum_probs=143.5
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------------------hhhhcee
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLY 300 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------~aq~G~~ 300 (752)
+++++||+++|+++++ ++||++++| ++++|+||||||||||||++ |++.+ +|+.-.|
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G-~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKG-EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCC-cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 6789999999998887 999999999 99999999999999999999 66653 3566679
Q ss_pred ecCCCCCCc----------------h-----------HHHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEE
Q 004463 301 LPAKNHPRL----------------P-----------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 352 (752)
Q Consensus 301 vP~~~~~~l----------------~-----------~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~Ll 352 (752)
+||...... + .++..+..+|..+..++.+.+||||++ |+.+|++++.+|++|
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iL 160 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPIL 160 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEE
Confidence 998852111 1 134458889999999999999999999 677789999999999
Q ss_pred EEeCCCCCCChHhHHHHHHHHHHHHh-cCCcEEEEEecchhHH-hhhcccccccCCceeec
Q 004463 353 LIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 411 (752)
Q Consensus 353 LLDEp~~glD~~~~~~L~~all~~l~-~~~~tviitTH~~~l~-~~a~~~~~i~~g~v~~~ 411 (752)
||||||++||+.....++. ++..+. ++|.|+|+|+||++++ ++||+.+.+++|.+...
T Consensus 161 LLDEPTs~LDi~~Q~evl~-ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~ 220 (258)
T COG1120 161 LLDEPTSHLDIAHQIEVLE-LLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQ 220 (258)
T ss_pred EeCCCccccCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEee
Confidence 9999999999999999999 555566 6699999999999965 59999999999998665
No 26
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=1.4e-29 Score=252.06 Aligned_cols=166 Identities=23% Similarity=0.312 Sum_probs=140.1
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh---------------------hhhhc
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------MSKAG 298 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~---------------------~aq~G 298 (752)
||+++||+|+||+..| ++|+++.+| ++++|+||+||||||||||| +|-.+ ..+.|
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~G-evv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKG-EVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCC-CEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 7899999999999887 999999999 99999999999999999999 22211 11233
Q ss_pred eeecCCC--CCCchHHHH----------------------HHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEE
Q 004463 299 LYLPAKN--HPRLPWFDL----------------------ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 353 (752)
Q Consensus 299 ~~vP~~~--~~~l~~~d~----------------------i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlL 353 (752)
+|+|+. ++.+++.++ ++..+|+.+..+..++.||||++ |++++++++.+|.++|
T Consensus 81 -mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmL 159 (240)
T COG1126 81 -MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVML 159 (240)
T ss_pred -eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEe
Confidence 455543 233444333 47889999999999999999999 8999999999999999
Q ss_pred EeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhcccccccCCceeec
Q 004463 354 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC-LKDKDTRFENAATEFS 411 (752)
Q Consensus 354 LDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~-~a~~~~~i~~g~v~~~ 411 (752)
+|||||.|||+....+.. ++..|++.|.|.|+|||.+.+++ .||+++.+..|.+...
T Consensus 160 FDEPTSALDPElv~EVL~-vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~ 217 (240)
T COG1126 160 FDEPTSALDPELVGEVLD-VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEE 217 (240)
T ss_pred ecCCcccCCHHHHHHHHH-HHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEe
Confidence 999999999999999988 77889999999999999999765 8999999988866543
No 27
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.6e-29 Score=261.24 Aligned_cols=166 Identities=23% Similarity=0.316 Sum_probs=139.0
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------h---------hhceeec
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S---------KAGLYLP 302 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------a---------q~G~~vP 302 (752)
.+++++|+++.|++.++ ++||++++| ++++|+||||||||||+|++ |++.+. . ....|||
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G-~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVP 81 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKG-EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVP 81 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcC
Confidence 46889999999996555 999999999 99999999999999999999 877541 1 1345899
Q ss_pred CCCCC--Cch---------------------------HHHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEE
Q 004463 303 AKNHP--RLP---------------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 352 (752)
Q Consensus 303 ~~~~~--~l~---------------------------~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~Ll 352 (752)
|.... .+| -++..+.++|+.+..++.+++|||||+ |+.+|++++.+|+|+
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~ll 161 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLL 161 (254)
T ss_pred cccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEE
Confidence 85411 111 145678899999999999999999999 888999999999999
Q ss_pred EEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 004463 353 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 410 (752)
Q Consensus 353 LLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~ 410 (752)
||||||+|+|+.....|.. ++..+++.|+|||++|||+. +..++|+++.+. .++.+
T Consensus 162 lLDEP~~gvD~~~~~~i~~-lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~ 218 (254)
T COG1121 162 LLDEPFTGVDVAGQKEIYD-LLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIA 218 (254)
T ss_pred EecCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEe
Confidence 9999999999999999998 88888888999999999988 667899887654 44433
No 28
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.96 E-value=5.5e-29 Score=251.31 Aligned_cols=167 Identities=21% Similarity=0.306 Sum_probs=140.5
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-----------------------hh
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----------------------MS 295 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-----------------------~a 295 (752)
..+++++|+++||++.| ++||++++| ++++|+||+|+|||||||+| ||+.+ ..
T Consensus 7 ~~I~vr~v~~~fG~~~Ild~v~l~V~~G-ei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 7 PLIEVRGVTKSFGDRVILDGVDLDVPRG-EILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred ceEEEeeeeeecCCEEEecCceeeecCC-cEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 36789999999999998 999999999 99999999999999999999 66643 12
Q ss_pred hhceeecCCC--CCCchHHHHH----------------------HHHcCCchh-hhcCcccchHHHH-HHHHHHHccCCC
Q 004463 296 KAGLYLPAKN--HPRLPWFDLI----------------------LADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRE 349 (752)
Q Consensus 296 q~G~~vP~~~--~~~l~~~d~i----------------------~~~ig~~~~-i~~~~stlSgg~k-rl~~i~~la~~~ 349 (752)
++| .+.|.+ +..+++++|+ +..+|+... .+..+|.|||||+ |+++|++++.+|
T Consensus 86 r~G-vlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdP 164 (263)
T COG1127 86 RMG-VLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDP 164 (263)
T ss_pred hee-EEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCC
Confidence 344 334444 3456666665 455677777 8999999999999 999999999999
Q ss_pred cEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 350 SLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 350 ~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+||++||||+||||.....+.. ++..|.+ -|.|++++|||.+ +..+||++..+.++++.+.
T Consensus 165 ell~~DEPtsGLDPI~a~~~~~-LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~ 227 (263)
T COG1127 165 ELLFLDEPTSGLDPISAGVIDE-LIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAE 227 (263)
T ss_pred CEEEecCCCCCCCcchHHHHHH-HHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEe
Confidence 9999999999999999988888 5555555 5889999999977 7789999999999999876
No 29
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.96 E-value=4.9e-28 Score=285.50 Aligned_cols=172 Identities=17% Similarity=0.205 Sum_probs=135.3
Q ss_pred CCCeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------h---hhceeecCCC--
Q 004463 240 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------S---KAGLYLPAKN-- 305 (752)
Q Consensus 240 g~~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------a---q~G~~vP~~~-- 305 (752)
|+.+|+++||+++|++.++ ++||+|.+| ++++|+||||||||||||+| |++.+. . .+ .|+|+..
T Consensus 316 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i-~y~~q~~~~ 393 (635)
T PRK11147 316 GKIVFEMENVNYQIDGKQLVKDFSAQVQRG-DKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEV-AYFDQHRAE 393 (635)
T ss_pred CCceEEEeeeEEEECCeEEEcCcEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEE-EEEeCcccc
Confidence 3458899999999998766 999999999 99999999999999999999 665431 1 12 2556542
Q ss_pred -CCCchHHHH-------------------HHHHcCCc-hhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCCh
Q 004463 306 -HPRLPWFDL-------------------ILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 363 (752)
Q Consensus 306 -~~~l~~~d~-------------------i~~~ig~~-~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~ 363 (752)
...++++++ ++..++.. +..++++++|||||+ |++++++++.+|++|||||||+|||+
T Consensus 394 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~ 473 (635)
T PRK11147 394 LDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDV 473 (635)
T ss_pred cCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 112233322 34455553 457889999999999 89999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhccccccc-CCceeeccCcccc
Q 004463 364 SEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE-NAATEFSLETLRP 417 (752)
Q Consensus 364 ~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~-~g~v~~~~~~l~~ 417 (752)
.....|...+.++ ++|||++|||.+ +..+|++++.+. +|.+..+.+++..
T Consensus 474 ~~~~~l~~~l~~~----~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 474 ETLELLEELLDSY----QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred HHHHHHHHHHHhC----CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence 9998888755443 579999999988 556999999997 7998877766553
No 30
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=8.5e-28 Score=245.64 Aligned_cols=162 Identities=24% Similarity=0.339 Sum_probs=137.3
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh-------h-------hceeecCCC
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------K-------AGLYLPAKN 305 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a-------q-------~G~~vP~~~ 305 (752)
++.++++++.|++..+ ++||++.+| ++++|+||+|||||||||+| ||..+-. + --.+++|+.
T Consensus 3 ~l~i~~v~~~f~~~~vl~~i~L~v~~G-EfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~ 81 (248)
T COG1116 3 LLEIEGVSKSFGGVEVLEDINLSVEKG-EFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED 81 (248)
T ss_pred eEEEEeeEEEeCceEEeccceeEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccC
Confidence 6789999999998766 999999999 99999999999999999999 5554321 0 012444443
Q ss_pred CCCchH------------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCC
Q 004463 306 HPRLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 360 (752)
Q Consensus 306 ~~~l~~------------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~g 360 (752)
.-+|| .+.++..+|+.+..++.++.|||||+ |++++++++.+|++|||||||+.
T Consensus 82 -~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgA 160 (248)
T COG1116 82 -ALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGA 160 (248)
T ss_pred -cccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcch
Confidence 23333 34557888999999999999999999 89999999999999999999999
Q ss_pred CChHhHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhcccccccCC
Q 004463 361 TDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENA 406 (752)
Q Consensus 361 lD~~~~~~L~~all~~l~~~~~tviitTH~~~l~-~~a~~~~~i~~g 406 (752)
||..++..+...+++-+.+.+.|+|++|||.+.+ .++|+++.+.++
T Consensus 161 LDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 161 LDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred hhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 9999999999999998889899999999998754 589999888884
No 31
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=7.8e-28 Score=257.99 Aligned_cols=167 Identities=25% Similarity=0.342 Sum_probs=138.6
Q ss_pred eEEEcccccccC-CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhhce
Q 004463 243 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 299 (752)
Q Consensus 243 ~l~~~~ls~~y~-~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~G~ 299 (752)
++.+.||++.|+ ++.+ ++||++.+| ++++|+||||||||||||++ |++.+. .++ .
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~G-ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~i-g 81 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPG-EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRI-G 81 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCC-eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhhe-E
Confidence 467899999999 5665 999999999 99999999999999999999 666431 123 3
Q ss_pred eecCCCC--CCch---------------------HHHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEe
Q 004463 300 YLPAKNH--PRLP---------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 355 (752)
Q Consensus 300 ~vP~~~~--~~l~---------------------~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLD 355 (752)
|+|+... ..++ .++.++..+|+....++.+++||+||+ |+.++.+++.+|+|+|||
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLD 161 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILD 161 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 6776642 1111 244567788888766788999999999 899999999999999999
Q ss_pred CCCCCCChHhHHHHHHHHHHHHhcCC-cEEEEEecchh-HHhhhcccccccCCceeecc
Q 004463 356 EIGSGTDPSEGVALATSILQYLRDRV-GLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 412 (752)
Q Consensus 356 Ep~~glD~~~~~~L~~all~~l~~~~-~tviitTH~~~-l~~~a~~~~~i~~g~v~~~~ 412 (752)
|||+||||..+..+.. ++..+.+.+ .|||++||+++ +..+||++..+.+|.+.++.
T Consensus 162 EPt~GLDp~~~~~~~~-~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g 219 (293)
T COG1131 162 EPTSGLDPESRREIWE-LLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEG 219 (293)
T ss_pred CCCcCCCHHHHHHHHH-HHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeC
Confidence 9999999999999998 666677766 79999999987 66689999999999998864
No 32
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.95 E-value=7.8e-28 Score=236.53 Aligned_cols=159 Identities=19% Similarity=0.316 Sum_probs=134.4
Q ss_pred eEEEcccccccCCee--E-eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCC------------
Q 004463 243 EMTVGSLSKGISDFP--V-PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP------------ 307 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~--v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~------------ 307 (752)
|+++.+++|+|++.+ + +++|++..| ++++|.||||+||||+||+| .++..|.+|.+
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~G-ei~GlLG~NGAGKTT~LRmi--------atlL~P~~G~v~idg~d~~~~p~ 71 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEG-EITGLLGENGAGKTTLLRMI--------ATLLIPDSGKVTIDGVDTVRDPS 71 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccc-eEEEEEcCCCCCchhHHHHH--------HHhccCCCceEEEeecccccChH
Confidence 788999999999854 2 999999999 99999999999999999999 33444444311
Q ss_pred -----------------Cch------HH---------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCC
Q 004463 308 -----------------RLP------WF---------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 348 (752)
Q Consensus 308 -----------------~l~------~~---------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~ 348 (752)
.++ +| +.+...+++.+.+++.+..||-||| +++++++++++
T Consensus 72 ~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~ 151 (245)
T COG4555 72 FVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHD 151 (245)
T ss_pred HHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcC
Confidence 111 11 2334556778889999999999999 89999999999
Q ss_pred CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 349 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 349 ~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
|++++|||||+|||......+.. ++..++..|.+||++||.++ +..+||+++.+++|.+.+.
T Consensus 152 P~i~vlDEP~sGLDi~~~r~~~d-fi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~ 214 (245)
T COG4555 152 PSILVLDEPTSGLDIRTRRKFHD-FIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLE 214 (245)
T ss_pred CCeEEEcCCCCCccHHHHHHHHH-HHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEc
Confidence 99999999999999999999888 77778888999999999976 7779999999999998875
No 33
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.95 E-value=2.1e-27 Score=259.66 Aligned_cols=170 Identities=19% Similarity=0.254 Sum_probs=138.8
Q ss_pred CCCeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------------------hhhc
Q 004463 240 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAG 298 (752)
Q Consensus 240 g~~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------aq~G 298 (752)
+..|++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+. .+.-
T Consensus 38 ~~~~i~i~nl~k~y~~~~~l~~is~~i~~G-ei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~i 116 (340)
T PRK13536 38 STVAIDLAGVSKSYGDKAVVNGLSFTVASG-ECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARI 116 (340)
T ss_pred CceeEEEEEEEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccE
Confidence 3457999999999998765 999999999 99999999999999999999 665431 1122
Q ss_pred eeecCCCC--CCchHHH---------------------HHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEE
Q 004463 299 LYLPAKNH--PRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 354 (752)
Q Consensus 299 ~~vP~~~~--~~l~~~d---------------------~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLL 354 (752)
.|+|+... ..+++.+ .++..+++.+..++.+++||+||+ |+.++++++.+|++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiL 196 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLIL 196 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 36676542 1222222 345566777778899999999999 89999999999999999
Q ss_pred eCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 355 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 355 DEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
||||+||||..+..+...+ ..+.+.|.|||++||+++ +..+|+++..+.+|++.++
T Consensus 197 DEPt~gLD~~~r~~l~~~l-~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~ 253 (340)
T PRK13536 197 DEPTTGLDPHARHLIWERL-RSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAE 253 (340)
T ss_pred ECCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999944 456667899999999988 5679999999999998765
No 34
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.95 E-value=2.2e-27 Score=256.27 Aligned_cols=168 Identities=21% Similarity=0.273 Sum_probs=138.0
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------------------hhhcee
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLY 300 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------aq~G~~ 300 (752)
.|++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+.-.|
T Consensus 6 ~~i~i~~l~k~~~~~~~l~~vsl~i~~G-ei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~ 84 (306)
T PRK13537 6 APIDFRNVEKRYGDKLVVDGLSFHVQRG-ECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84 (306)
T ss_pred ceEEEEeEEEEECCeEEEecceEEEeCC-cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEE
Confidence 47899999999988665 999999999 99999999999999999999 665431 122246
Q ss_pred ecCCCC--CCchHHH---------------------HHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeC
Q 004463 301 LPAKNH--PRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 356 (752)
Q Consensus 301 vP~~~~--~~l~~~d---------------------~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDE 356 (752)
+|+... ..+++.+ .++..+++.+..++.+++||+||+ |+.++++++.+|++|||||
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDE 164 (306)
T PRK13537 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDE 164 (306)
T ss_pred EeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 776642 1223322 334566777778899999999999 8999999999999999999
Q ss_pred CCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 357 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 357 p~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
||+||||..+..+.. ++..+.+.|.|||++||+++ +..+|+++..+.+|++.+.
T Consensus 165 Pt~gLD~~~~~~l~~-~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~ 219 (306)
T PRK13537 165 PTTGLDPQARHLMWE-RLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAE 219 (306)
T ss_pred CCcCCCHHHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999998 55556777899999999988 5679999999999998765
No 35
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=5.2e-27 Score=236.47 Aligned_cols=169 Identities=22% Similarity=0.307 Sum_probs=140.6
Q ss_pred CeEEEccccccc-CCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-----------------------h
Q 004463 242 SEMTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----------------------M 294 (752)
Q Consensus 242 ~~l~~~~ls~~y-~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-----------------------~ 294 (752)
.||+++||++.| +++.. +|+|+|++| ++++|+||+|+|||||||++ |++.+ .
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~G-E~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQG-EMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCC-cEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 478999999999 55554 999999999 99999999999999999999 66532 3
Q ss_pred hhhceeecCCCC--CCchHHH-----------------------------HHHHHcCCchhhhcCcccchHHHH-HHHHH
Q 004463 295 SKAGLYLPAKNH--PRLPWFD-----------------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDI 342 (752)
Q Consensus 295 aq~G~~vP~~~~--~~l~~~d-----------------------------~i~~~ig~~~~i~~~~stlSgg~k-rl~~i 342 (752)
+++| ++.+..+ ..++++. ..+.++|+.+...+..++||||++ |++++
T Consensus 81 ~~iG-mIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIA 159 (258)
T COG3638 81 RDIG-MIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIA 159 (258)
T ss_pred Hhce-eEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHH
Confidence 4566 3444431 1222222 236778899999999999999999 99999
Q ss_pred HHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhcccccccCCceeecc
Q 004463 343 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFSL 412 (752)
Q Consensus 343 ~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~-~~a~~~~~i~~g~v~~~~ 412 (752)
++++.+|+++|-|||++.|||.....++..+.+.-.+.|.|+|++-|+.+++ .||++++.+.+|++.||.
T Consensus 160 RaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 160 RALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred HHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 9999999999999999999999999999955555556789999999999966 499999999999999983
No 36
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.94 E-value=3e-27 Score=239.77 Aligned_cols=167 Identities=22% Similarity=0.275 Sum_probs=135.7
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh--------------------hhhhce
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------------------MSKAGL 299 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~--------------------~aq~G~ 299 (752)
|++++||||.|+++.+ ++||+++.| ++++++||+||||||+||+| +|+.+ ..++|
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~g-ef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG- 78 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEG-EFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG- 78 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCC-eEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh-
Confidence 6889999999998776 999999999 99999999999999999999 44422 11223
Q ss_pred eecCC-C-CCCchH---------------------HHHHHHHcCCc--hhhhcCcccchHHHH-HHHHHHHccCCCcEEE
Q 004463 300 YLPAK-N-HPRLPW---------------------FDLILADIGDH--QSLEQNLSTFSGHIS-RIVDILELVSRESLVL 353 (752)
Q Consensus 300 ~vP~~-~-~~~l~~---------------------~d~i~~~ig~~--~~i~~~~stlSgg~k-rl~~i~~la~~~~LlL 353 (752)
|+-+. + ++.+++ .+.++..+|++ +..++.++.||||++ |+-.++++|.+|+++|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilL 158 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILL 158 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEe
Confidence 22222 1 122222 33456777875 578999999999999 8999999999999999
Q ss_pred EeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhcccccccCCceeec
Q 004463 354 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 411 (752)
Q Consensus 354 LDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~-~~a~~~~~i~~g~v~~~ 411 (752)
|||||+.|||..+..|-..+.+.-.+-+.|+|++|||++.+ .++|++..|..|.+.-+
T Consensus 159 MDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~ 217 (309)
T COG1125 159 MDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQY 217 (309)
T ss_pred ecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEe
Confidence 99999999999999999977776666799999999998854 59999999999987543
No 37
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=4.3e-27 Score=239.97 Aligned_cols=164 Identities=19% Similarity=0.257 Sum_probs=131.7
Q ss_pred eEEEcccccccCCe----eE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhh-hh----------------------
Q 004463 243 EMTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLA-SL---------------------- 293 (752)
Q Consensus 243 ~l~~~~ls~~y~~~----~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli-~~---------------------- 293 (752)
|++++||++.|+.. .+ ++||++.+| ++++|+||+||||||||+++|.+ .+
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~G-e~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~ 79 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAG-EFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAK 79 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHH
Confidence 45688999988632 23 999999999 99999999999999999999533 22
Q ss_pred -hhhhceeecCCCC--CCchHHH---------------------HHHHHcCCchhhh-cCcccchHHHH-HHHHHHHccC
Q 004463 294 -MSKAGLYLPAKNH--PRLPWFD---------------------LILADIGDHQSLE-QNLSTFSGHIS-RIVDILELVS 347 (752)
Q Consensus 294 -~aq~G~~vP~~~~--~~l~~~d---------------------~i~~~ig~~~~i~-~~~stlSgg~k-rl~~i~~la~ 347 (752)
..+.-.|++|..+ ..++..+ .++..+|+.+... +.++.|||||+ |+++|++++.
T Consensus 80 ~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~ 159 (226)
T COG1136 80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALIN 159 (226)
T ss_pred HHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhc
Confidence 1122235666542 2233333 3455668887776 88999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCc
Q 004463 348 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAA 407 (752)
Q Consensus 348 ~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~ 407 (752)
+|++||.||||.+||+..+..+...+.+...+.|.|+|+||||..++.+|++.+.+.+|.
T Consensus 160 ~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 160 NPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGK 219 (226)
T ss_pred CCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCe
Confidence 999999999999999999999999555544556899999999999999999999999997
No 38
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.94 E-value=5.1e-27 Score=240.59 Aligned_cols=164 Identities=15% Similarity=0.231 Sum_probs=130.5
Q ss_pred eEEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh----------------------h
Q 004463 243 EMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------S 295 (752)
Q Consensus 243 ~l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~----------------------a 295 (752)
|++++||++.|++ ..+ ++||++.+| ++++|+||||||||||||++ |++.+. .
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKG-EMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLR 79 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHH
Confidence 5789999999964 334 999999999 99999999999999999999 665320 1
Q ss_pred hhceeecCCCC--CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcE
Q 004463 296 KAGLYLPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 351 (752)
Q Consensus 296 q~G~~vP~~~~--~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~L 351 (752)
+.-.|+|+... ..+++. ..++..+|+.+..++.+.+|||||+ |++++++++.+|++
T Consensus 80 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (216)
T TIGR00960 80 RHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPL 159 (216)
T ss_pred HhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 12246666542 112222 2345567777778899999999999 89999999999999
Q ss_pred EEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCce
Q 004463 352 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAAT 408 (752)
Q Consensus 352 lLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v 408 (752)
+||||||+|||+.....+.. ++..+.+.+.|+|++||+.+ +..+|++++.+.+|.+
T Consensus 160 lllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 160 LLADEPTGNLDPELSRDIMR-LFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred EEEeCCCCcCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999998 44556666889999999988 4568999988888753
No 39
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=6.4e-27 Score=239.37 Aligned_cols=164 Identities=21% Similarity=0.194 Sum_probs=131.0
Q ss_pred EEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------hhhceeecCC
Q 004463 245 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAK 304 (752)
Q Consensus 245 ~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------aq~G~~vP~~ 304 (752)
+++||++.|++.++ ++||++.+| ++++|+||||||||||||++ |++.+- .+...|+|+.
T Consensus 2 ~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 80 (213)
T cd03259 2 ELKGLSKTYGSVRALDDLSLTVEPG-EFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQD 80 (213)
T ss_pred eeeeeEEEeCCeeeecceeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCc
Confidence 57899999987666 999999999 99999999999999999999 665431 0112356665
Q ss_pred CC--CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCC
Q 004463 305 NH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 360 (752)
Q Consensus 305 ~~--~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~g 360 (752)
.. ..+++. ..++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+|
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~ 160 (213)
T cd03259 81 YALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSA 160 (213)
T ss_pred hhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 31 111221 2345567777778899999999999 89999999999999999999999
Q ss_pred CChHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceee
Q 004463 361 TDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 410 (752)
Q Consensus 361 lD~~~~~~L~~all~~l~~-~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~ 410 (752)
||+.....+...+. .+.+ .|.++|++||+.+ +..+|++++.+.+|.+..
T Consensus 161 LD~~~~~~l~~~l~-~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 161 LDAKLREELREELK-ELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred CCHHHHHHHHHHHH-HHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999998554 4544 5889999999987 567999999999987653
No 40
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.94 E-value=7.4e-27 Score=251.92 Aligned_cols=168 Identities=20% Similarity=0.241 Sum_probs=136.5
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------------------hhhcee
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLY 300 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------aq~G~~ 300 (752)
.|++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+. .+...|
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~ 81 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKVVVNDLSFTIARG-ECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81 (303)
T ss_pred cEEEEEeEEEEeCCeEEEcceeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEE
Confidence 47899999999988765 999999999 99999999999999999999 665421 112246
Q ss_pred ecCCCCC--CchHHH---------------------HHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeC
Q 004463 301 LPAKNHP--RLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 356 (752)
Q Consensus 301 vP~~~~~--~l~~~d---------------------~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDE 356 (752)
+|+.... .+++.+ .++..+++.+..++.+++|||||+ |+.++++++.+|++|||||
T Consensus 82 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 161 (303)
T TIGR01288 82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDE 161 (303)
T ss_pred EeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 6765421 122222 234556777777899999999999 8999999999999999999
Q ss_pred CCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 357 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 357 p~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
||+||||.....+... +..+.+.|.|+|++||+++ +..+|++++.+.+|++...
T Consensus 162 Pt~gLD~~~~~~l~~~-l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~ 216 (303)
T TIGR01288 162 PTTGLDPHARHLIWER-LRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAE 216 (303)
T ss_pred CCcCCCHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999984 4556666899999999988 5569999999999988654
No 41
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=4.9e-27 Score=236.81 Aligned_cols=166 Identities=21% Similarity=0.340 Sum_probs=139.7
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh----------------hhhceeecC
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------SKAGLYLPA 303 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~----------------aq~G~~vP~ 303 (752)
++++++|+|+||++.+ ++||++++| ++++++||||+||||++|+| |++.+- .++| |.|-
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G-~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIG-yLPE 79 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPG-EIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIG-YLPE 79 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCC-eEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcc-cChh
Confidence 5789999999999876 999999999 99999999999999999999 665431 1233 5555
Q ss_pred CCC--CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCC
Q 004463 304 KNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 359 (752)
Q Consensus 304 ~~~--~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~ 359 (752)
+.. ..+++. +.++.+++......+++.+||-|++ ++.++.+++++|.|||||||||
T Consensus 80 ERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFS 159 (300)
T COG4152 80 ERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFS 159 (300)
T ss_pred hhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCcc
Confidence 431 233333 3456777777888899999999988 7999999999999999999999
Q ss_pred CCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 360 GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 360 glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
||||.....|-.++.+ +++.|+|||++||.++ ...+||+...+..|+.+++
T Consensus 160 GLDPVN~elLk~~I~~-lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~ 211 (300)
T COG4152 160 GLDPVNVELLKDAIFE-LKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLY 211 (300)
T ss_pred CCChhhHHHHHHHHHH-HHhcCCEEEEecchHHHHHHHhhhhheecCCceEEe
Confidence 9999999999996665 7888999999999998 7779999999999988876
No 42
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.94 E-value=1.2e-26 Score=238.03 Aligned_cols=162 Identities=22% Similarity=0.286 Sum_probs=128.8
Q ss_pred EEEcccccccCC----eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh----------------------
Q 004463 244 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------- 294 (752)
Q Consensus 244 l~~~~ls~~y~~----~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~---------------------- 294 (752)
++++||++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G-~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKG-EFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAF 79 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCC-CEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHH
Confidence 357899999976 455 999999999 99999999999999999999 665320
Q ss_pred -hhhceeecCCCC--CCchH---------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCC
Q 004463 295 -SKAGLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 349 (752)
Q Consensus 295 -aq~G~~vP~~~~--~~l~~---------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~ 349 (752)
.+...|+|+... ..+++ ++.++..+|+....++.+.+|||||+ |++++++++.+|
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 159 (218)
T cd03255 80 RRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDP 159 (218)
T ss_pred HhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCC
Confidence 112245665531 11111 23345667777778899999999999 899999999999
Q ss_pred cEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhcccccccCCc
Q 004463 350 SLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAA 407 (752)
Q Consensus 350 ~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~l~~~a~~~~~i~~g~ 407 (752)
++|||||||+|||+.....+...+. .+.+ .+.|+|++||+.+...+|++++.+.+|+
T Consensus 160 ~lllLDEP~~~LD~~~~~~l~~~l~-~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~ 217 (218)
T cd03255 160 KIILADEPTGNLDSETGKEVMELLR-ELNKEAGTTIVVVTHDPELAEYADRIIELRDGK 217 (218)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHH-HHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCc
Confidence 9999999999999999999998554 4554 5889999999988556999998888875
No 43
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.94 E-value=9.2e-27 Score=236.95 Aligned_cols=161 Identities=22% Similarity=0.241 Sum_probs=129.2
Q ss_pred EcccccccCC-eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh----------------hhhceeecCCC
Q 004463 246 VGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------SKAGLYLPAKN 305 (752)
Q Consensus 246 ~~~ls~~y~~-~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~----------------aq~G~~vP~~~ 305 (752)
++||++.|++ ..+ ++||++.+| ++++|+|||||||||||+++ |++.+- .+...|+|+..
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAG-EIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 5789999986 555 999999999 99999999999999999999 665421 11123666653
Q ss_pred C---CCchH-----------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChH
Q 004463 306 H---PRLPW-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 364 (752)
Q Consensus 306 ~---~~l~~-----------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~ 364 (752)
. ...++ +..++..+|+.+..++.+.+||+||+ |++++++++.+|+++||||||+|||+.
T Consensus 81 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 160 (205)
T cd03226 81 DYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYK 160 (205)
T ss_pred hhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHH
Confidence 1 11122 23446667887788899999999999 899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCce
Q 004463 365 EGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAAT 408 (752)
Q Consensus 365 ~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v 408 (752)
....+.. ++..+.+.+.++|++||+.+ +..+|++++.+.+|++
T Consensus 161 ~~~~l~~-~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 161 NMERVGE-LIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred HHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999988 55556566889999999988 5568999999988865
No 44
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.94 E-value=1.3e-26 Score=237.71 Aligned_cols=166 Identities=22% Similarity=0.298 Sum_probs=133.5
Q ss_pred eEEEcccccccCCe----eE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------------------hhh
Q 004463 243 EMTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKA 297 (752)
Q Consensus 243 ~l~~~~ls~~y~~~----~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------aq~ 297 (752)
|++++||++.|++. ++ ++||++.+| ++++|+||||||||||||+| |++.+. .+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPG-EVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRR 79 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhh
Confidence 57789999999875 45 999999999 99999999999999999999 665321 111
Q ss_pred ceeecCCCC--CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEE
Q 004463 298 GLYLPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 353 (752)
Q Consensus 298 G~~vP~~~~--~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlL 353 (752)
..|+|+... ..+++. +.++..+|+.+.+++.+.+||+||+ |++++++++.+|++||
T Consensus 80 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ill 159 (218)
T cd03266 80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLL 159 (218)
T ss_pred EEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 235666531 111221 2345667887888999999999999 8999999999999999
Q ss_pred EeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 004463 354 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 410 (752)
Q Consensus 354 LDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~ 410 (752)
|||||+|||+.....+...+ ..+.+.+.|+|++||+.+ +..+|++++.+.+|++..
T Consensus 160 lDEPt~~LD~~~~~~l~~~l-~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 160 LDEPTTGLDVMATRALREFI-RQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred EcCCCcCCCHHHHHHHHHHH-HHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 99999999999999999844 455666889999999987 567899999999988753
No 45
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.6e-26 Score=237.62 Aligned_cols=166 Identities=23% Similarity=0.303 Sum_probs=132.9
Q ss_pred EEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------------------hhhceeec
Q 004463 244 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP 302 (752)
Q Consensus 244 l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------aq~G~~vP 302 (752)
++++|+++.|++..+ +++|++.+| ++++|+||||||||||||+| |++.+. .+.-.|+|
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRG-EIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 357899999988766 999999999 99999999999999999999 665321 01123666
Q ss_pred CCCC--CCchH---------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCC
Q 004463 303 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 358 (752)
Q Consensus 303 ~~~~--~~l~~---------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~ 358 (752)
+... ..+++ ++.++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt 159 (220)
T cd03265 80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPT 159 (220)
T ss_pred CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 6541 11122 22345667777778899999999999 899999999999999999999
Q ss_pred CCCChHhHHHHHHHHHHHHhcC-CcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 359 SGTDPSEGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 359 ~glD~~~~~~L~~all~~l~~~-~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+|||+.....+...+.+ +.+. +.++|++||+.+ +..+|++++.+.+|.+...
T Consensus 160 ~~LD~~~~~~l~~~l~~-~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~ 213 (220)
T cd03265 160 IGLDPQTRAHVWEYIEK-LKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAE 213 (220)
T ss_pred cCCCHHHHHHHHHHHHH-HHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 99999999999985544 5544 889999999987 5668999999999988654
No 46
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.94 E-value=1.6e-26 Score=236.39 Aligned_cols=163 Identities=17% Similarity=0.225 Sum_probs=128.9
Q ss_pred eEEEcccccccC-CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh----------------------hhh
Q 004463 243 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------MSK 296 (752)
Q Consensus 243 ~l~~~~ls~~y~-~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~----------------------~aq 296 (752)
|++++|+++.|+ +..+ ++||++.+| ++++|+||||||||||||+| |++.+ +.+
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G-~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKG-EFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 578999999994 5555 999999999 99999999999999999999 66532 011
Q ss_pred hceeecCCCCC--CchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEE
Q 004463 297 AGLYLPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 352 (752)
Q Consensus 297 ~G~~vP~~~~~--~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~Ll 352 (752)
...|+|+.... .+++. ..++..+++.+..++.+.+|||||+ |++++++++.+|+++
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 159 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLL 159 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEE
Confidence 22466665311 12222 2345566777778889999999999 899999999999999
Q ss_pred EEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCc
Q 004463 353 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAA 407 (752)
Q Consensus 353 LLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~ 407 (752)
||||||+|+|+.....+...+. .+.+.+.|+|++||+.+ +..+|++++.+.+|+
T Consensus 160 lLDEPt~~LD~~~~~~l~~~l~-~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 160 LADEPTGNLDPDLSERILDLLK-RLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred EEeCCcccCCHHHHHHHHHHHH-HHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 9999999999999999998554 45666889999999987 556899988887763
No 47
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.94 E-value=1.9e-26 Score=243.09 Aligned_cols=170 Identities=17% Similarity=0.209 Sum_probs=137.3
Q ss_pred CCeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh--------------hhhceeecC
Q 004463 241 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------SKAGLYLPA 303 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------aq~G~~vP~ 303 (752)
..+|+++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+...|+|+
T Consensus 10 ~~~l~i~~l~~~~~~~~il~~isl~i~~G-e~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q 88 (257)
T PRK11247 10 GTPLLLNAVSKRYGERTVLNQLDLHIPAG-QFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQ 88 (257)
T ss_pred CCcEEEEEEEEEECCcceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEec
Confidence 457899999999987665 999999999 99999999999999999999 665431 111236666
Q ss_pred CCCC--CchH---------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHh
Q 004463 304 KNHP--RLPW---------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 365 (752)
Q Consensus 304 ~~~~--~l~~---------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~ 365 (752)
.... ..++ +..++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+|||+..
T Consensus 89 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~ 168 (257)
T PRK11247 89 DARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALT 168 (257)
T ss_pred CccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 5311 1122 22346667888888999999999999 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 366 GVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 366 ~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
...+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|.+..+
T Consensus 169 ~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~ 215 (257)
T PRK11247 169 RIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLD 215 (257)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 999998555544556889999999988 5679999999999988654
No 48
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.9e-26 Score=237.12 Aligned_cols=165 Identities=21% Similarity=0.255 Sum_probs=130.7
Q ss_pred EEcccccccCC----eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh--------------hhhceeecC
Q 004463 245 TVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------SKAGLYLPA 303 (752)
Q Consensus 245 ~~~~ls~~y~~----~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------aq~G~~vP~ 303 (752)
+++||++.|++ .++ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|+|+
T Consensus 2 ~~~~l~~~~~~~~~~~~il~~vs~~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 2 EVRNVSKTYGGGGGAVTALEDISLSVEEG-EFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred eEEEEEEEcCCCCcceEEEeceeEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 57899999986 555 999999999 99999999999999999999 665331 112235666
Q ss_pred CCC--CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCC
Q 004463 304 KNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 359 (752)
Q Consensus 304 ~~~--~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~ 359 (752)
... ..+++. +.++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~ 160 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFS 160 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 531 112222 2345566777778889999999999 8999999999999999999999
Q ss_pred CCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhccccccc--CCceee
Q 004463 360 GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE--NAATEF 410 (752)
Q Consensus 360 glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~--~g~v~~ 410 (752)
|||+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+. +|.+..
T Consensus 161 ~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~ 214 (220)
T cd03293 161 ALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEE
Confidence 999999999999555443455889999999987 667999999998 687754
No 49
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2e-26 Score=239.28 Aligned_cols=166 Identities=20% Similarity=0.260 Sum_probs=132.1
Q ss_pred EEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh----------------------hhhc
Q 004463 244 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SKAG 298 (752)
Q Consensus 244 l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~----------------------aq~G 298 (752)
++++||++.|++..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+..
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRG-EILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 357899999987665 999999999 99999999999999999999 665321 1112
Q ss_pred eeecCCCC--CCchHHH----------------------HHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEE
Q 004463 299 LYLPAKNH--PRLPWFD----------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 353 (752)
Q Consensus 299 ~~vP~~~~--~~l~~~d----------------------~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlL 353 (752)
.|+|+... ..+++.+ .++..+|+.+..++.+++|||||+ |++++++++.+|++||
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll 159 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLL 159 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 36666531 1122222 235556777777889999999999 8999999999999999
Q ss_pred EeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 354 IDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 354 LDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
|||||+|||+.....+...+ ..+.+ .+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 160 lDEPt~~LD~~~~~~l~~~l-~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~ 218 (235)
T cd03261 160 YDEPTAGLDPIASGVIDDLI-RSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAE 218 (235)
T ss_pred ecCCcccCCHHHHHHHHHHH-HHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEe
Confidence 99999999999999999854 44554 5889999999988 5668999999999988654
No 50
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.94 E-value=2.2e-26 Score=235.24 Aligned_cols=165 Identities=15% Similarity=0.220 Sum_probs=130.9
Q ss_pred EEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------hhhceeecCC
Q 004463 245 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAK 304 (752)
Q Consensus 245 ~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------aq~G~~vP~~ 304 (752)
+++|+++.|++..+ ++||++.+| ++++|+||||+|||||||++ |++.+- .+...|+|+.
T Consensus 2 ~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~ 80 (213)
T cd03301 2 ELENVTKRFGNVTALDDLNLDIADG-EFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN 80 (213)
T ss_pred EEEeeEEEECCeeeeeceEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecC
Confidence 57899999987665 999999999 99999999999999999999 665431 0112355655
Q ss_pred CC--CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCC
Q 004463 305 NH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 360 (752)
Q Consensus 305 ~~--~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~g 360 (752)
.. ...+++ +.++..+|+.+..++.+++||+||+ |++++++++.+|+++||||||+|
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~ 160 (213)
T cd03301 81 YALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSN 160 (213)
T ss_pred hhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 31 111221 2345667777788999999999999 89999999999999999999999
Q ss_pred CChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 004463 361 TDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 410 (752)
Q Consensus 361 lD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~ 410 (752)
||+.....+...+.+...+.+.|+|++||+.+ +..+|+++..+.+|++..
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~ 211 (213)
T cd03301 161 LDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQ 211 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence 99999999998555433335889999999987 566899999999887754
No 51
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.6e-26 Score=238.13 Aligned_cols=168 Identities=17% Similarity=0.186 Sum_probs=133.8
Q ss_pred eEEEcccccccCCe----eE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh---------------------
Q 004463 243 EMTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 294 (752)
Q Consensus 243 ~l~~~~ls~~y~~~----~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------------- 294 (752)
|++++|+++.|++. ++ ++||++.+| ++++|+||||||||||||+| |++.+.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKG-EIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRK 79 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHH
Confidence 57899999999865 55 999999999 99999999999999999999 665321
Q ss_pred -hhhceeecCCCCC--CchHHH---------------------HHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCC
Q 004463 295 -SKAGLYLPAKNHP--RLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 349 (752)
Q Consensus 295 -aq~G~~vP~~~~~--~l~~~d---------------------~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~ 349 (752)
.+...|+|+.... .+++.+ .++..+|+.+..++.+++||+||+ |++++++++.+|
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 159 (233)
T cd03258 80 ARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNP 159 (233)
T ss_pred HHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 1123466666421 122222 335556777778899999999999 899999999999
Q ss_pred cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 350 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 350 ~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
+++||||||+|||+.....+...+.+...+.|.|+|++||+.+. ..+|++++.+.+|++...
T Consensus 160 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 222 (233)
T cd03258 160 KVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEE 222 (233)
T ss_pred CEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999985554333448899999999884 568999999999988644
No 52
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.94 E-value=2.9e-26 Score=228.86 Aligned_cols=154 Identities=24% Similarity=0.341 Sum_probs=129.9
Q ss_pred EcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCC----------------
Q 004463 246 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP---------------- 307 (752)
Q Consensus 246 ~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~---------------- 307 (752)
++||++.|++..+ ++||++.+| ++++|+||||+||||||+++ +|+..|.+|..
T Consensus 2 ~~~l~~~~~~~~~l~~~~~~i~~G-~~~~l~G~nGsGKStLl~~i--------~G~~~~~~G~v~~~g~~~~~~~~~~~~ 72 (180)
T cd03214 2 VENLSVGYGGRTVLDDLSLSIEAG-EIVGILGPNGAGKSTLLKTL--------AGLLKPSSGEILLDGKDLASLSPKELA 72 (180)
T ss_pred eeEEEEEECCeeeEeeeEEEECCC-CEEEEECCCCCCHHHHHHHH--------hCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 5789999987655 999999999 99999999999999999999 66655555421
Q ss_pred -CchHHHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcC-CcEE
Q 004463 308 -RLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLA 384 (752)
Q Consensus 308 -~l~~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~-~~tv 384 (752)
.++++.+++..+|+.+.+++.+.+||+||+ |++++++++.+|+++||||||+|+|+.....+...+ ..+.++ +.|+
T Consensus 73 ~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l-~~~~~~~~~ti 151 (180)
T cd03214 73 RKIAYVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELL-RRLARERGKTV 151 (180)
T ss_pred HHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHHHhcCCEE
Confidence 123334467788998888999999999999 899999999999999999999999999999999844 455554 7899
Q ss_pred EEEecchhH-HhhhcccccccCCcee
Q 004463 385 VVTTHYADL-SCLKDKDTRFENAATE 409 (752)
Q Consensus 385 iitTH~~~l-~~~a~~~~~i~~g~v~ 409 (752)
|++||+.+. ..+|++.+.+.+|++.
T Consensus 152 ii~sh~~~~~~~~~d~~~~l~~g~i~ 177 (180)
T cd03214 152 VMVLHDLNLAARYADRVILLKDGRIV 177 (180)
T ss_pred EEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999885 5799999999988764
No 53
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.4e-26 Score=234.63 Aligned_cols=165 Identities=19% Similarity=0.270 Sum_probs=131.1
Q ss_pred EEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh---------------hhhceeecCCC
Q 004463 244 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------SKAGLYLPAKN 305 (752)
Q Consensus 244 l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~---------------aq~G~~vP~~~ 305 (752)
++++|+++.|++..+ ++||++.+| ++++|+|||||||||||++| |+..+. .....|+|+..
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKG-EIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence 357899999987665 899999999 99999999999999999999 665421 11123566653
Q ss_pred CC--CchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCC
Q 004463 306 HP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 361 (752)
Q Consensus 306 ~~--~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~gl 361 (752)
.. .+++. ..++..+|+....++.+.+||+||+ |++++++++.+|+++||||||+|+
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~L 159 (210)
T cd03269 80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGL 159 (210)
T ss_pred cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 11 12222 2345566777777889999999999 899999999999999999999999
Q ss_pred ChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 004463 362 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 410 (752)
Q Consensus 362 D~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~ 410 (752)
|+.....+... +..+.+.+.|+|++||+.+ +..+|++++.+.+|++..
T Consensus 160 D~~~~~~~~~~-l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 160 DPVNVELLKDV-IRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred CHHHHHHHHHH-HHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 99999999984 5556666889999999988 456899999999988653
No 54
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.94 E-value=2.2e-26 Score=234.62 Aligned_cols=164 Identities=24% Similarity=0.294 Sum_probs=132.0
Q ss_pred EEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------hhhceeecC
Q 004463 244 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPA 303 (752)
Q Consensus 244 l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------aq~G~~vP~ 303 (752)
++++|+++.|++.++ ++||++.+| ++++|+||||||||||||++ |+..+. .+...|+|+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKG-EIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence 357899999987665 999999999 99999999999999999999 665321 112336676
Q ss_pred CCC--CCchHH-----------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCCh
Q 004463 304 KNH--PRLPWF-----------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 363 (752)
Q Consensus 304 ~~~--~~l~~~-----------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~ 363 (752)
... ...++. +.++..+++.+..++.+.+||+||+ |++++++++.+|+++||||||+|||+
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~ 159 (208)
T cd03268 80 APGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP 159 (208)
T ss_pred CCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCH
Confidence 542 112222 2345667777788899999999999 89999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCcee
Q 004463 364 SEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 409 (752)
Q Consensus 364 ~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~ 409 (752)
.....+.. ++..+.+.+.|+|++||+.+ +..+|++++.+.+|++.
T Consensus 160 ~~~~~l~~-~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~ 205 (208)
T cd03268 160 DGIKELRE-LILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLI 205 (208)
T ss_pred HHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEE
Confidence 99999988 55556556889999999988 45689999999998765
No 55
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.1e-26 Score=241.24 Aligned_cols=168 Identities=16% Similarity=0.196 Sum_probs=132.3
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh--------------hhceeecCCC
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------------KAGLYLPAKN 305 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a--------------q~G~~vP~~~ 305 (752)
|++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+.. ....|+|+..
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~ 79 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESG-ELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNE 79 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCC
Confidence 5789999999987655 999999999 99999999999999999999 6654310 0123556553
Q ss_pred C--CCchH---------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCC
Q 004463 306 H--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 361 (752)
Q Consensus 306 ~--~~l~~---------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~gl 361 (752)
. ...++ +..++..+|+....++.+.+|||||+ |++++++++.+|++|||||||+||
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~L 159 (255)
T PRK11248 80 GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGAL 159 (255)
T ss_pred ccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 1 11122 22345667777777889999999999 899999999999999999999999
Q ss_pred ChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhccccccc--CCceeec
Q 004463 362 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE--NAATEFS 411 (752)
Q Consensus 362 D~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~--~g~v~~~ 411 (752)
|+.....+...+.+...+.|.|+|++||+.+ +..+|++++.+. +|++...
T Consensus 160 D~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~ 212 (255)
T PRK11248 160 DAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVER 212 (255)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEE
Confidence 9999999998554433445889999999988 567899999887 4776543
No 56
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.94 E-value=2.7e-26 Score=234.24 Aligned_cols=159 Identities=23% Similarity=0.256 Sum_probs=126.4
Q ss_pred EcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhhceee
Q 004463 246 VGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLYL 301 (752)
Q Consensus 246 ~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~G~~v 301 (752)
++||++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+. .+...|+
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G-~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKG-EFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 5789999976 555 999999999 99999999999999999999 665321 1122466
Q ss_pred cCCCC---CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeC
Q 004463 302 PAKNH---PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 356 (752)
Q Consensus 302 P~~~~---~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDE 356 (752)
|+... ...++. ..++..+++...+++.++.|||||+ |++++++++.+|+++||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 160 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDE 160 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 66531 122222 2245556777778899999999999 8999999999999999999
Q ss_pred CCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCC
Q 004463 357 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENA 406 (752)
Q Consensus 357 p~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g 406 (752)
||+|||+.....+...+. .+.+.+.++|++||+.+ +..+|++++.+.+|
T Consensus 161 Pt~~LD~~~~~~~~~~l~-~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G 210 (211)
T cd03225 161 PTAGLDPAGRRELLELLK-KLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210 (211)
T ss_pred CcccCCHHHHHHHHHHHH-HHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999998554 45555889999999987 55689999888776
No 57
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.94 E-value=3.2e-26 Score=237.16 Aligned_cols=166 Identities=22% Similarity=0.275 Sum_probs=132.9
Q ss_pred EEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------h-hhcee
Q 004463 244 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------S-KAGLY 300 (752)
Q Consensus 244 l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------a-q~G~~ 300 (752)
++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- . +.-.|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQG-EIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 357899999987665 999999999 99999999999999999999 665321 0 11235
Q ss_pred ecCCCC--CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeC
Q 004463 301 LPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 356 (752)
Q Consensus 301 vP~~~~--~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDE 356 (752)
+|+... ..+++. +.++..+|+.+..++.+.+||+||+ |++++++++.+|++|||||
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 159 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDE 159 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 666531 111221 2345556777778899999999999 8999999999999999999
Q ss_pred CCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 357 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 357 p~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
||+|||+.....+.. ++..+.+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 160 Pt~~LD~~~~~~~~~-~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 214 (232)
T cd03218 160 PFAGVDPIAVQDIQK-IIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAE 214 (232)
T ss_pred CcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEE
Confidence 999999999999998 55556666889999999986 7779999999999987643
No 58
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.94 E-value=3.9e-26 Score=237.44 Aligned_cols=167 Identities=20% Similarity=0.202 Sum_probs=133.5
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------------------hhhceee
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYL 301 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------aq~G~~v 301 (752)
|++++|++++|++..+ ++||++.+| ++++|+|||||||||||++| |+..+. .+...|+
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~ 79 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPG-EFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVV 79 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEe
Confidence 4678999999987766 999999999 99999999999999999999 665321 0123466
Q ss_pred cCCCCC--CchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCC
Q 004463 302 PAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 357 (752)
Q Consensus 302 P~~~~~--~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp 357 (752)
|+.... ..++. ..++..+|+.+.+++.+.+|||||+ |++++++++.+|+++|||||
T Consensus 80 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 159 (236)
T TIGR03864 80 FQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEP 159 (236)
T ss_pred CCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 665321 12222 2345566777778899999999999 89999999999999999999
Q ss_pred CCCCChHhHHHHHHHHHHHHh-cCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 358 GSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 358 ~~glD~~~~~~L~~all~~l~-~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
|+|||+.....+...+. .+. +.|.|+|++||+.+....|++++.+.+|++...
T Consensus 160 ~~~LD~~~~~~l~~~l~-~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~ 213 (236)
T TIGR03864 160 TVGLDPASRAAIVAHVR-ALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLAD 213 (236)
T ss_pred ccCCCHHHHHHHHHHHH-HHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEe
Confidence 99999999999998555 455 458899999999986566999999999987654
No 59
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.94 E-value=5e-26 Score=222.16 Aligned_cols=167 Identities=17% Similarity=0.242 Sum_probs=135.7
Q ss_pred eEEEcccccccCCee-E--eeeEEEccCceEEEEEcCCCCCHHHHHHHH--------Hhhh---------------hh-h
Q 004463 243 EMTVGSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL--------GLAS---------------LM-S 295 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~-v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i--------Gli~---------------~~-a 295 (752)
||+++||+|.|++.+ . ++||++++| +++.|+||+|+|||||||+| |.+. ++ .
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~G-ef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKG-EFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCc-eEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 688999999997655 3 999999999 99999999999999999999 2221 11 2
Q ss_pred hhceeecCCCC--CCchHHH---------------------HHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcE
Q 004463 296 KAGLYLPAKNH--PRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 351 (752)
Q Consensus 296 q~G~~vP~~~~--~~l~~~d---------------------~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~L 351 (752)
++| .|.|+.. ...+++| .++..+|+.+..+..+++||||++ |+++|++.++.|.+
T Consensus 80 ~IG-vVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~v 158 (223)
T COG2884 80 QIG-VVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAV 158 (223)
T ss_pred eee-eEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCe
Confidence 233 3444321 1222333 347778999999999999999998 89999999999999
Q ss_pred EEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhcccccccCCceeecc
Q 004463 352 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC-LKDKDTRFENAATEFSL 412 (752)
Q Consensus 352 lLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~-~a~~~~~i~~g~v~~~~ 412 (752)
||.||||.+|||.....++. +++.+...|.|||++|||.++.. +..+.+.+.+|.+..+.
T Consensus 159 LlADEPTGNLDp~~s~~im~-lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 159 LLADEPTGNLDPDLSWEIMR-LFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred EeecCCCCCCChHHHHHHHH-HHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 99999999999999999999 88889999999999999999655 66667778999887663
No 60
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.4e-26 Score=237.97 Aligned_cols=168 Identities=20% Similarity=0.238 Sum_probs=134.9
Q ss_pred CeEEEcccccccCCe-eE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh--------------------hhh
Q 004463 242 SEMTVGSLSKGISDF-PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKA 297 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~-~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------------aq~ 297 (752)
.|+.++++++.|++. .+ ++|+++.+| ++++|+||||||||||++++ ||+.+- .+.
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~G-e~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKG-ERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCC-CEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 378899999999765 44 999999999 99999999999999999999 444321 111
Q ss_pred ceeecCCCCCCc---hH---------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEE
Q 004463 298 GLYLPAKNHPRL---PW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 352 (752)
Q Consensus 298 G~~vP~~~~~~l---~~---------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~Ll 352 (752)
-.+|.|.+...+ ++ .+.++..+|+.+..++.+.+|||||+ |+++|..++.+|.++
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~il 160 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEIL 160 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEE
Confidence 113333221100 11 33457788999999999999999999 899999999999999
Q ss_pred EEeCCCCCCChHhHHHHHHHHHHHHhcC-CcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 353 LIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 353 LLDEp~~glD~~~~~~L~~all~~l~~~-~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
||||||+||||..+..+.. ++..|... |.|+|++|||++ +..+|++.+.+.+|.+..+
T Consensus 161 iLDEPta~LD~~~~~~l~~-~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~ 220 (235)
T COG1122 161 LLDEPTAGLDPKGRRELLE-LLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILAD 220 (235)
T ss_pred EEcCCCCCCCHHHHHHHHH-HHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeec
Confidence 9999999999999999998 66666665 689999999998 5668999999999988655
No 61
>PRK10908 cell division protein FtsE; Provisional
Probab=99.94 E-value=3.9e-26 Score=235.20 Aligned_cols=165 Identities=13% Similarity=0.146 Sum_probs=131.4
Q ss_pred eEEEccccccc-CCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh----------------------hh
Q 004463 243 EMTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SK 296 (752)
Q Consensus 243 ~l~~~~ls~~y-~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~----------------------aq 296 (752)
|++++|+++.| ++..+ ++||++.+| ++++|+|||||||||||++| |+..+- .+
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPG-EMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 57899999999 55555 999999999 99999999999999999999 665320 11
Q ss_pred hceeecCCCCC--CchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEE
Q 004463 297 AGLYLPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 352 (752)
Q Consensus 297 ~G~~vP~~~~~--~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~Ll 352 (752)
...|+|+.... ..++. +.++..+++.+.+++.+++||+||+ |++++++++.+|++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVL 159 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEE
Confidence 22366665421 11221 2345666777778899999999999 899999999999999
Q ss_pred EEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCcee
Q 004463 353 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 409 (752)
Q Consensus 353 LLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~ 409 (752)
||||||+|||+.....+.. ++..+.+.+.++|++||+.+ +..+|++++.+.+|++.
T Consensus 160 llDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 160 LADEPTGNLDDALSEGILR-LFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred EEeCCCCcCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 9999999999999999998 44556666889999999988 55689999999888763
No 62
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=4.4e-26 Score=237.49 Aligned_cols=167 Identities=19% Similarity=0.226 Sum_probs=133.2
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------hhhceeec
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 302 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------aq~G~~vP 302 (752)
+++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|+|
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 80 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSG-ELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVF 80 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEe
Confidence 4789999999988666 999999999 99999999999999999999 665321 01123566
Q ss_pred CCCCC--CchHH-------------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEE
Q 004463 303 AKNHP--RLPWF-------------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 354 (752)
Q Consensus 303 ~~~~~--~l~~~-------------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLL 354 (752)
+.... .+++. +.++..+|+....++.+.+||+||+ |++++++++.+|++|||
T Consensus 81 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 160 (239)
T cd03296 81 QHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLL 160 (239)
T ss_pred cCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 55311 11111 2345566777777889999999999 89999999999999999
Q ss_pred eCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 355 DEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 355 DEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
||||+|||+.....+.. ++..+.+ .+.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 161 DEP~~~LD~~~~~~l~~-~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (239)
T cd03296 161 DEPFGALDAKVRKELRR-WLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQV 218 (239)
T ss_pred cCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEe
Confidence 99999999999999998 4445554 4889999999988 5678999999999987644
No 63
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=4.4e-26 Score=232.86 Aligned_cols=165 Identities=18% Similarity=0.249 Sum_probs=131.2
Q ss_pred EEcccccccCCeeEeeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------hhhceeecCCCC
Q 004463 245 TVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAKNH 306 (752)
Q Consensus 245 ~~~~ls~~y~~~~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------aq~G~~vP~~~~ 306 (752)
.++|+++.|++..+++||++.+| ++++|+||||||||||||+| |+..+. .+...|+|+...
T Consensus 2 ~~~~l~~~~~~~~~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~ 80 (211)
T cd03298 2 RLDKIRFSYGEQPMHFDLTFAQG-EITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENN 80 (211)
T ss_pred EEEeEEEEeCCEecceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccc
Confidence 57899999987667999999999 99999999999999999999 665431 011235666531
Q ss_pred C--CchH---------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCC
Q 004463 307 P--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 362 (752)
Q Consensus 307 ~--~l~~---------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD 362 (752)
. .+++ +..++..+|+....++.+.+||+||+ |++++++++.+|+++||||||+|||
T Consensus 81 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD 160 (211)
T cd03298 81 LFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALD 160 (211)
T ss_pred cCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 1 1122 22345566777778889999999999 8999999999999999999999999
Q ss_pred hHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 004463 363 PSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 410 (752)
Q Consensus 363 ~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~ 410 (752)
+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|.+..
T Consensus 161 ~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 161 PALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 999999999555443445899999999988 557899999999988753
No 64
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.93 E-value=3.5e-26 Score=221.56 Aligned_cols=160 Identities=21% Similarity=0.297 Sum_probs=140.2
Q ss_pred eEEEcccccccCCeeEeeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCc-------------
Q 004463 243 EMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRL------------- 309 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l------------- 309 (752)
|+.+++|.++|+..+..+|+.++.| ++++|+||+|+||||||+.| .|+..|++|...+
T Consensus 1 ~l~L~~V~~~y~~~~~~fdl~v~~g-e~vAi~GpSGaGKSTLLnLI--------AGF~~P~~G~i~i~g~d~t~~~P~~R 71 (231)
T COG3840 1 MLALDDVRFSYGHLPMRFDLTVPAG-EIVAILGPSGAGKSTLLNLI--------AGFETPASGEILINGVDHTASPPAER 71 (231)
T ss_pred CccccceEEeeCcceEEEEEeecCC-cEEEEECCCCccHHHHHHHH--------HhccCCCCceEEEcCeecCcCCcccC
Confidence 4668899999999888999999999 99999999999999999999 7777777762111
Q ss_pred ---------------hH---------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEE
Q 004463 310 ---------------PW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 352 (752)
Q Consensus 310 ---------------~~---------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~Ll 352 (752)
++ ++.+...+|+....++.+.+||||++ |++++++++.+..++
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~Pil 151 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPIL 151 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeE
Confidence 11 44567889999999999999999999 999999999999999
Q ss_pred EEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 353 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 353 LLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
|||||++.|||.-+..+...+.....+++.|++|+||..+ ...++++.+.+.+|++...
T Consensus 152 LLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~ 211 (231)
T COG3840 152 LLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQ 211 (231)
T ss_pred EecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEee
Confidence 9999999999999999988666656677899999999977 7789999999999999775
No 65
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.93 E-value=4.5e-26 Score=245.61 Aligned_cols=166 Identities=19% Similarity=0.294 Sum_probs=135.5
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------------------hhhceee
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYL 301 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------aq~G~~v 301 (752)
+++++|+++.|++..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+.-.|+
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~G-ei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~ 80 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKG-RIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYL 80 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCC-eEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEe
Confidence 3678999999988766 999999999 99999999999999999999 665321 1122466
Q ss_pred cCCCC--CCchH---------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCC
Q 004463 302 PAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 357 (752)
Q Consensus 302 P~~~~--~~l~~---------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp 357 (752)
|+... ..+++ ++.++..+|+.+..++.+++||+||+ |+.++++++.+|++||||||
T Consensus 81 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEP 160 (301)
T TIGR03522 81 PEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEP 160 (301)
T ss_pred cCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 66542 11222 23345667888888999999999999 89999999999999999999
Q ss_pred CCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 358 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 358 ~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
|+||||.....+.. ++..+.+ +.|+|++||+++ +..+|+++..+.+|++.+.
T Consensus 161 t~gLD~~~~~~l~~-~l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~ 213 (301)
T TIGR03522 161 TTGLDPNQLVEIRN-VIKNIGK-DKTIILSTHIMQEVEAICDRVIIINKGKIVAD 213 (301)
T ss_pred cccCCHHHHHHHHH-HHHHhcC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999998 4455655 689999999987 6779999999999998764
No 66
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.93 E-value=4.7e-26 Score=253.36 Aligned_cols=167 Identities=22% Similarity=0.275 Sum_probs=137.7
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhhcee
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 300 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~G~~ 300 (752)
||+++||+++|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+. ++.-.+
T Consensus 3 ~L~~~nls~~y~~~~vL~~vs~~i~~G-eiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREG-SLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred eEEEeeEEEEECCEEEEEeeEEEECCC-CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 6889999999998776 999999999 99999999999999999999 665431 112235
Q ss_pred ecCCCCC--CchH-------------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEE
Q 004463 301 LPAKNHP--RLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 352 (752)
Q Consensus 301 vP~~~~~--~l~~-------------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~Ll 352 (752)
+|+.... .+++ ++.++..+|+.+..++.+.+|||||+ |+.++++++.+|++|
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iL 161 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVL 161 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 6665321 1111 23456667888888999999999999 899999999999999
Q ss_pred EEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhcccccccCCceeec
Q 004463 353 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 411 (752)
Q Consensus 353 LLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~-~~a~~~~~i~~g~v~~~ 411 (752)
||||||+|||+.....+.. ++..+.+.+.|+|++||++++. .+|++++.+.+|++..+
T Consensus 162 LLDEPtsgLD~~~~~~l~~-lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~ 220 (402)
T PRK09536 162 LLDEPTASLDINHQVRTLE-LVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAA 220 (402)
T ss_pred EEECCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999998 5566666688999999999855 79999999999998654
No 67
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.6e-26 Score=241.92 Aligned_cols=167 Identities=18% Similarity=0.175 Sum_probs=133.8
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh---------------------hhhc
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAG 298 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~---------------------aq~G 298 (752)
||+++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |++.+. .+..
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLS-PVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 6789999999987666 999999999 99999999999999999999 665321 1123
Q ss_pred eeecCCCC---CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEE
Q 004463 299 LYLPAKNH---PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 353 (752)
Q Consensus 299 ~~vP~~~~---~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlL 353 (752)
.|+|+... ...++. +.++..+|+.+..++.+++|||||+ |++++++++.+|++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lll 159 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLL 159 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 46676531 111111 1245556777777889999999999 8999999999999999
Q ss_pred EeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 354 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 354 LDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
|||||+|||+.....+.. ++..+.+.|.|+|++||+.+. ..+|++++.+.+|++...
T Consensus 160 LDEPt~~LD~~~~~~l~~-~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~ 217 (271)
T PRK13638 160 LDEPTAGLDPAGRTQMIA-IIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTH 217 (271)
T ss_pred EeCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999998 445566668899999999884 578999999999988654
No 68
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.93 E-value=5.4e-26 Score=232.25 Aligned_cols=161 Identities=23% Similarity=0.275 Sum_probs=128.7
Q ss_pred EEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh---------------------hhhcee
Q 004463 245 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAGLY 300 (752)
Q Consensus 245 ~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~---------------------aq~G~~ 300 (752)
+++||++.|++..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+...|
T Consensus 2 ~~~~l~~~~~~~~~l~~~s~~i~~G-~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 2 EIKNLHKSFGDFHVLKGIDLTVKKG-EVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred EEEEEEEEECCeEeecCceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 57899999987665 999999999 99999999999999999999 665321 112246
Q ss_pred ecCCCC--CCchHH----------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEe
Q 004463 301 LPAKNH--PRLPWF----------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 355 (752)
Q Consensus 301 vP~~~~--~~l~~~----------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLD 355 (752)
+|+... ..+++. ..++..+|+...+++.+.+||+||+ |++++++++.+|+++|||
T Consensus 81 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 160 (213)
T cd03262 81 VFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFD 160 (213)
T ss_pred EecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 666532 112222 2234556777778899999999999 899999999999999999
Q ss_pred CCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCc
Q 004463 356 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAA 407 (752)
Q Consensus 356 Ep~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~ 407 (752)
|||+|||+.....+.. ++..+.+.+.|+|++||+.+ +..+|++++.+.+|+
T Consensus 161 EP~~~LD~~~~~~l~~-~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~ 212 (213)
T cd03262 161 EPTSALDPELVGEVLD-VMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGR 212 (213)
T ss_pred CCccCCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 9999999999999988 55556666889999999988 557899998888775
No 69
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.93 E-value=7e-26 Score=232.89 Aligned_cols=163 Identities=21% Similarity=0.240 Sum_probs=128.9
Q ss_pred EEEcccccccCC----eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------h---------------
Q 004463 244 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------M--------------- 294 (752)
Q Consensus 244 l~~~~ls~~y~~----~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------~--------------- 294 (752)
++++||++.|++ .++ ++||++.+| ++++|+||||||||||||+| |+..+ .
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G-~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKG-EIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 578999999964 334 999999999 99999999999999999999 66432 0
Q ss_pred h-hhceeecCCCCC--CchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCC
Q 004463 295 S-KAGLYLPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 349 (752)
Q Consensus 295 a-q~G~~vP~~~~~--~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~ 349 (752)
. +...|+|+.... .+++. ..++..+|+.+..++.+.+|||||+ |++++++++.+|
T Consensus 81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 160 (221)
T TIGR02211 81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQP 160 (221)
T ss_pred HHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCC
Confidence 0 123466766311 12222 2345566777778899999999999 899999999999
Q ss_pred cEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhcccccccCCce
Q 004463 350 SLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAAT 408 (752)
Q Consensus 350 ~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~l~~~a~~~~~i~~g~v 408 (752)
+++||||||+|||+.....+...+ ..+.+ .+.|+|++||+.+....+++++.+.+|++
T Consensus 161 ~illlDEPt~~LD~~~~~~l~~~l-~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i 219 (221)
T TIGR02211 161 SLVLADEPTGNLDNNNAKIIFDLM-LELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQL 219 (221)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEe
Confidence 999999999999999999999844 44554 58899999999986666888888888765
No 70
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=5.3e-26 Score=249.23 Aligned_cols=168 Identities=16% Similarity=0.185 Sum_probs=134.2
Q ss_pred eEEEcccccccC----CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh---------------------
Q 004463 243 EMTVGSLSKGIS----DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 294 (752)
Q Consensus 243 ~l~~~~ls~~y~----~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------------- 294 (752)
|++++||+++|+ +..+ ++||++.+| ++++|+||||||||||||++ |++.+.
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~G-ei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 79 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAG-EIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRK 79 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHH
Confidence 678999999997 3444 999999999 99999999999999999999 665321
Q ss_pred -hhhceeecCCCC--CCchHHH---------------------HHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCC
Q 004463 295 -SKAGLYLPAKNH--PRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 349 (752)
Q Consensus 295 -aq~G~~vP~~~~--~~l~~~d---------------------~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~ 349 (752)
.+...|+|+... ..+++.+ .++..+|+.+..++.+++|||||+ |++++++++.+|
T Consensus 80 ~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p 159 (343)
T PRK11153 80 ARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNP 159 (343)
T ss_pred HhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 112346676542 1122222 345567777788899999999999 899999999999
Q ss_pred cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 350 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 350 ~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
++|||||||+|||+.....+...+.+...+.|.|+|++||+++ +..+|++++.+.+|++..+
T Consensus 160 ~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~ 222 (343)
T PRK11153 160 KVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQ 222 (343)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999998554433345889999999988 4668999999999987654
No 71
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.93 E-value=6.2e-26 Score=236.38 Aligned_cols=167 Identities=22% Similarity=0.274 Sum_probs=134.0
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh---------------------hhhc
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAG 298 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~---------------------aq~G 298 (752)
|++++|+++.|++..+ ++||++.+| ++++|+||||+||||||++| |++.+. .+..
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQG-EVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 5789999999987665 999999999 99999999999999999999 665321 0112
Q ss_pred eeecCCCC--CCchHH----------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEE
Q 004463 299 LYLPAKNH--PRLPWF----------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 353 (752)
Q Consensus 299 ~~vP~~~~--~~l~~~----------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlL 353 (752)
.|+|+... ..+++. ..++..+|+...+++.++.||+||+ |++++++++.+|+++|
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 159 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLML 159 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 45665531 111221 2345666777778899999999999 8999999999999999
Q ss_pred EeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 354 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 354 LDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
|||||+|+|+.....+.. ++..+.+.+.|+|++||+.+. ..+|++++.+.+|++...
T Consensus 160 lDEP~~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 217 (240)
T PRK09493 160 FDEPTSALDPELRHEVLK-VMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAED 217 (240)
T ss_pred EcCCcccCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 999999999999999998 555566668899999999884 568999999999988653
No 72
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.93 E-value=7.4e-26 Score=240.11 Aligned_cols=168 Identities=20% Similarity=0.175 Sum_probs=134.5
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh----------------------hh
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SK 296 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~----------------------aq 296 (752)
.||+++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 6 NLVDMRGVSFTRGNRCIFDNISLTVPRG-KITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred ceEEEeCeEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 47899999999987766 999999999 99999999999999999999 665321 11
Q ss_pred hceeecCCCC--CCchHHHH----------------------HHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcE
Q 004463 297 AGLYLPAKNH--PRLPWFDL----------------------ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 351 (752)
Q Consensus 297 ~G~~vP~~~~--~~l~~~d~----------------------i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~L 351 (752)
...|+|+... ..+++.++ ++..+|+.+..++.+++|||||+ |++++++++.+|++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~l 164 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDL 164 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 1246666532 11222222 34556777777889999999999 89999999999999
Q ss_pred EEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 352 VLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 352 lLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
|||||||+|||+.....+...+. .+.+ .|.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 165 llLDEPt~~LD~~~~~~l~~~l~-~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~ 225 (269)
T PRK11831 165 IMFDEPFVGQDPITMGVLVKLIS-ELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAH 225 (269)
T ss_pred EEEcCCCccCCHHHHHHHHHHHH-HHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEe
Confidence 99999999999999999998554 4544 4889999999977 6678999999999988654
No 73
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.93 E-value=6e-26 Score=248.08 Aligned_cols=167 Identities=17% Similarity=0.175 Sum_probs=134.8
Q ss_pred eEEEcccccccCC----eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh---------------------
Q 004463 243 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 294 (752)
Q Consensus 243 ~l~~~~ls~~y~~----~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------------- 294 (752)
||+++||++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |+..+-
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~G-ei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~ 79 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAG-QIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTK 79 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 6889999999952 234 999999999 99999999999999999999 665421
Q ss_pred -hhhceeecCCCCC--CchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCC
Q 004463 295 -SKAGLYLPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 349 (752)
Q Consensus 295 -aq~G~~vP~~~~~--~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~ 349 (752)
.+...++|+.... ..+++ ..++..+|+.+..++.+++|||||+ |++++++++.+|
T Consensus 80 ~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P 159 (343)
T TIGR02314 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNP 159 (343)
T ss_pred HhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCC
Confidence 1123466766421 12222 2346667888888999999999999 899999999999
Q ss_pred cEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 350 SLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 350 ~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
++|||||||++|||.....+.. ++..+.+ .|.|+|++||+++. ..+|+++..+.+|++...
T Consensus 160 ~iLLlDEPts~LD~~t~~~i~~-lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~ 222 (343)
T TIGR02314 160 KVLLCDEATSALDPATTQSILE-LLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 222 (343)
T ss_pred CEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999998 5555655 48999999999984 579999999999987643
No 74
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.93 E-value=5.7e-26 Score=244.40 Aligned_cols=168 Identities=19% Similarity=0.264 Sum_probs=135.3
Q ss_pred CeEEEcccccccCCe-eE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------hhhceee
Q 004463 242 SEMTVGSLSKGISDF-PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYL 301 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~-~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------aq~G~~v 301 (752)
.+++++||+|.||+. .+ ++|+++.+| ++++|+||||||||||||+| ||..+- .+--.+|
T Consensus 2 ~~i~l~~v~K~yg~~~~l~~i~l~i~~G-ef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamV 80 (338)
T COG3839 2 AELELKNVRKSFGSFEVLKDVNLDIEDG-EFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMV 80 (338)
T ss_pred cEEEEeeeEEEcCCceeeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEE
Confidence 368899999999997 66 999999999 99999999999999999999 444321 0111233
Q ss_pred cCCC--CCCchHHHHH---------------------HHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCC
Q 004463 302 PAKN--HPRLPWFDLI---------------------LADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 357 (752)
Q Consensus 302 P~~~--~~~l~~~d~i---------------------~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp 357 (752)
+|+. ++.+++++++ ...+++.+.+++.+++||||++ |++++++++.+|+++|||||
T Consensus 81 FQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEP 160 (338)
T COG3839 81 FQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEP 160 (338)
T ss_pred eCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCc
Confidence 3332 2344555543 5567889999999999999999 89999999999999999999
Q ss_pred CCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 004463 358 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 410 (752)
Q Consensus 358 ~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~ 410 (752)
.|+||..-+..+-.-+.+...+.+.|+|++|||.. ...++|++..+.+|.+.-
T Consensus 161 lSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 161 LSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred hhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee
Confidence 99999999999888666644455889999999965 556999999888887643
No 75
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.93 E-value=1.1e-25 Score=234.73 Aligned_cols=168 Identities=19% Similarity=0.226 Sum_probs=132.5
Q ss_pred eEEEcccccccC-CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh----------------------hh
Q 004463 243 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SK 296 (752)
Q Consensus 243 ~l~~~~ls~~y~-~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~----------------------aq 296 (752)
|+.++||++.|+ +..+ ++||++.+| ++++|+||||||||||||+| |+..+. .+
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPG-EFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 577899999997 6555 999999999 99999999999999999999 665320 11
Q ss_pred hceeecCCCC--CCchHH-----------------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHH
Q 004463 297 AGLYLPAKNH--PRLPWF-----------------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILE 344 (752)
Q Consensus 297 ~G~~vP~~~~--~~l~~~-----------------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~ 344 (752)
...|+|+... ..+++. ..++..+|+....++.+.+|||||+ |++++++
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 159 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARA 159 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 1346666531 111222 2235556777778899999999999 8999999
Q ss_pred ccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 345 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 345 la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
++.+|++|||||||+|||+.....+...+.+...+.+.|+|++||+.+. ..+|++++.+.+|.+...
T Consensus 160 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~ 227 (243)
T TIGR02315 160 LAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFD 227 (243)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 9999999999999999999999999884444334457899999999884 578999999999987643
No 76
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=8e-26 Score=234.50 Aligned_cols=168 Identities=19% Similarity=0.254 Sum_probs=134.4
Q ss_pred eEEEcccccccCCeeEeeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------hhhceeecCC
Q 004463 243 EMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAK 304 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------aq~G~~vP~~ 304 (752)
|++++||+++|++...++||++.+| ++++|+||||||||||||++ |+..+. .....|+|+.
T Consensus 1 ~l~~~~l~~~~~~~~~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 79 (232)
T PRK10771 1 MLKLTDITWLYHHLPMRFDLTVERG-ERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQE 79 (232)
T ss_pred CeEEEEEEEEECCccceeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecc
Confidence 5789999999987667999999999 99999999999999999999 665431 0112356665
Q ss_pred CC--CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCC
Q 004463 305 NH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 360 (752)
Q Consensus 305 ~~--~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~g 360 (752)
.. ..+++. ..++..+|+...+++.+.+||+||+ |++++++++.+|+++||||||+|
T Consensus 80 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~g 159 (232)
T PRK10771 80 NNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSA 159 (232)
T ss_pred cccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 31 111222 2345566777788999999999999 89999999999999999999999
Q ss_pred CChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 361 TDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 361 lD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
||+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 160 LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~ 211 (232)
T PRK10771 160 LDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWD 211 (232)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999998555443445889999999988 4678999999999987644
No 77
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=4.8e-26 Score=231.14 Aligned_cols=159 Identities=23% Similarity=0.339 Sum_probs=136.1
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCC--------------
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH-------------- 306 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~-------------- 306 (752)
++++++|+++||+..+ ++||++.+| ++++|+||||+||||++++| .|+|.|.+|.
T Consensus 4 lL~v~~l~k~FGGl~Al~~Vsl~v~~G-ei~~LIGPNGAGKTTlfNli--------tG~~~P~~G~v~~~G~~it~l~p~ 74 (250)
T COG0411 4 LLEVRGLSKRFGGLTAVNDVSLEVRPG-EIVGLIGPNGAGKTTLFNLI--------TGFYKPSSGTVIFRGRDITGLPPH 74 (250)
T ss_pred eeeeccceeecCCEEEEeceeEEEcCC-eEEEEECCCCCCceeeeeee--------cccccCCCceEEECCcccCCCCHH
Confidence 5678999999999776 999999999 99999999999999999999 7777777651
Q ss_pred -----------------CCchHHHHH---------------------------------HHHcCCchhhhcCcccchHHH
Q 004463 307 -----------------PRLPWFDLI---------------------------------LADIGDHQSLEQNLSTFSGHI 336 (752)
Q Consensus 307 -----------------~~l~~~d~i---------------------------------~~~ig~~~~i~~~~stlSgg~ 336 (752)
..+++++++ +..+|+.+..+...++||+|+
T Consensus 75 ~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~ 154 (250)
T COG0411 75 RIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQ 154 (250)
T ss_pred HHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhH
Confidence 233334433 445788888999999999999
Q ss_pred H-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 337 S-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 337 k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+ ++.++++++++|.|||||||.+|++|.+...++. ++..+.+ .|.|++++.||+. +..+||+++++..|++.++
T Consensus 155 qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~-~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAe 231 (250)
T COG0411 155 QRRLEIARALATQPKLLLLDEPAAGLNPEETEELAE-LIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAE 231 (250)
T ss_pred hHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCccc
Confidence 8 6888899999999999999999999999999999 6666776 4689999999999 5569999999999988765
No 78
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.93 E-value=6.9e-26 Score=231.66 Aligned_cols=161 Identities=16% Similarity=0.200 Sum_probs=127.1
Q ss_pred EEcccccccCC-eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh----------------------hhhc
Q 004463 245 TVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SKAG 298 (752)
Q Consensus 245 ~~~~ls~~y~~-~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~----------------------aq~G 298 (752)
+++|+++.|++ ..+ ++||++.+| ++++|+|||||||||||+++ |+..+. .+..
T Consensus 2 ~~~~l~~~~~~~~~~l~~~sl~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 2 EFINVTKTYPNGTAALDGINISISAG-EFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred EEEEEEEEeCCCceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 57899999964 344 999999999 99999999999999999999 664321 1123
Q ss_pred eeecCCCC--CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEE
Q 004463 299 LYLPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 354 (752)
Q Consensus 299 ~~vP~~~~--~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLL 354 (752)
.|+|+... ..+++. +.++..+|+.+..++.+.+||+||+ |++++++++.+|+++||
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 160 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIA 160 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEE
Confidence 46666531 111222 2345556777778889999999999 89999999999999999
Q ss_pred eCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCc
Q 004463 355 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAA 407 (752)
Q Consensus 355 DEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~ 407 (752)
||||+|||+.....+...+ ..+.+.+.|+|++||+.+ +..+|++++.+.+|+
T Consensus 161 DEPt~~LD~~~~~~~~~~l-~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~ 213 (214)
T cd03292 161 DEPTGNLDPDTTWEIMNLL-KKINKAGTTVVVATHAKELVDTTRHRVIALERGK 213 (214)
T ss_pred eCCCCcCCHHHHHHHHHHH-HHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 9999999999999999855 455666889999999988 455899998888775
No 79
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.93 E-value=1e-25 Score=232.86 Aligned_cols=167 Identities=19% Similarity=0.283 Sum_probs=131.7
Q ss_pred CeEEEcccccccCC----eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh--------------------
Q 004463 242 SEMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------- 294 (752)
Q Consensus 242 ~~l~~~~ls~~y~~----~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------- 294 (752)
.|++++||+++|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+.
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRG-ETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence 47899999999975 234 999999999 99999999999999999999 665321
Q ss_pred ---hhhceeecCCCC--CCchHHH---------------------HHHHHcCCchhhhcCcccchHHHH-HHHHHHHccC
Q 004463 295 ---SKAGLYLPAKNH--PRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS 347 (752)
Q Consensus 295 ---aq~G~~vP~~~~--~~l~~~d---------------------~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~ 347 (752)
.+...|+|+... ..+++.+ .++..+++.+.+++.+.+||+||+ |+.++++++.
T Consensus 84 ~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~ 163 (228)
T PRK10584 84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG 163 (228)
T ss_pred HHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 012246666532 1122222 335556777778889999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCcee
Q 004463 348 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATE 409 (752)
Q Consensus 348 ~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~ 409 (752)
+|+++||||||+|||+.....+...+.+...+.+.|||++||+.+....|++++.+.+|++.
T Consensus 164 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~ 225 (228)
T PRK10584 164 RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQ 225 (228)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999855443344588999999998866779999989888764
No 80
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.93 E-value=8.4e-26 Score=232.33 Aligned_cols=166 Identities=23% Similarity=0.275 Sum_probs=130.4
Q ss_pred EEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh--------------------hhhcee
Q 004463 244 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY 300 (752)
Q Consensus 244 l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------------aq~G~~ 300 (752)
|+++||++.|++.++ ++||++.+| ++++|+|||||||||||+++ |++.+. .+.-.|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEG-EIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 357899999987665 999999999 99999999999999999999 665321 111236
Q ss_pred ecCCCC--CCchHHH-------------------HHHHHc-CCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCC
Q 004463 301 LPAKNH--PRLPWFD-------------------LILADI-GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 357 (752)
Q Consensus 301 vP~~~~--~~l~~~d-------------------~i~~~i-g~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp 357 (752)
+|+... ..+++.+ .++..+ +..+..++.+.+||+||+ |++++++++.+|+++|||||
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 159 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEP 159 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 666541 1122222 223344 355667888999999999 89999999999999999999
Q ss_pred CCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 358 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 358 ~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
|+|||+.....+...+ ..+.+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 160 t~~LD~~~~~~l~~~l-~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 213 (222)
T cd03224 160 SEGLAPKIVEEIFEAI-RELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLE 213 (222)
T ss_pred cccCCHHHHHHHHHHH-HHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEe
Confidence 9999999999999855 455656889999999988 5679999999999987643
No 81
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.93 E-value=1e-25 Score=236.00 Aligned_cols=167 Identities=21% Similarity=0.220 Sum_probs=133.9
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------------
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------- 294 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------------- 294 (752)
|++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPG-EVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 6889999999987665 999999999 99999999999999999999 665320
Q ss_pred --hhhceeecCCCCC--CchHHH----------------------HHHHHcCCchhhhcCcccchHHHH-HHHHHHHccC
Q 004463 295 --SKAGLYLPAKNHP--RLPWFD----------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS 347 (752)
Q Consensus 295 --aq~G~~vP~~~~~--~l~~~d----------------------~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~ 347 (752)
.+...|+|+.... ..++.+ .++..+|+....++.+++||+||+ |++++++++.
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~ 161 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAM 161 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhc
Confidence 0112466665311 122222 234556777677889999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 348 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 348 ~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+|++|||||||+|||+.....+.. ++..+.+.+.++|++||+.+ +..+|++++.+.+|.+...
T Consensus 162 ~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~ 225 (250)
T PRK11264 162 RPEVILFDEPTSALDPELVGEVLN-TIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQ 225 (250)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 999999999999999999999998 55556666889999999988 5578999999999987644
No 82
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.93 E-value=7.2e-26 Score=244.84 Aligned_cols=159 Identities=21% Similarity=0.298 Sum_probs=136.7
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCC--------------
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKN-------------- 305 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~-------------- 305 (752)
..++++||+|.||+..+ ++|+++.+| ++++|+||+||||||+||+| +|+.-|.+|
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~G-ef~~lLGPSGcGKTTlLR~I--------AGfe~p~~G~I~l~G~~i~~lpp 74 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKKG-EFVTLLGPSGCGKTTLLRMI--------AGFEQPSSGEILLDGEDITDVPP 74 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecCC-cEEEEECCCCCCHHHHHHHH--------hCCCCCCCceEEECCEECCCCCh
Confidence 46789999999997665 899999999 99999999999999999999 444444443
Q ss_pred --------------CCCchHHHH----------------------HHHHcCCchhhhcCcccchHHHH-HHHHHHHccCC
Q 004463 306 --------------HPRLPWFDL----------------------ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 348 (752)
Q Consensus 306 --------------~~~l~~~d~----------------------i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~ 348 (752)
++.++++++ ++..+++.+..++.++.|||||+ |+++|++++.+
T Consensus 75 ~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~ 154 (352)
T COG3842 75 EKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPE 154 (352)
T ss_pred hhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcC
Confidence 234444444 35667888899999999999999 99999999999
Q ss_pred CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhcccccccCCcee
Q 004463 349 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATE 409 (752)
Q Consensus 349 ~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~-~~a~~~~~i~~g~v~ 409 (752)
|.+||||||.++||..-+..+...+.+...+.|.|+|++|||.+.+ .++|++..|.+|++.
T Consensus 155 P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~ 216 (352)
T COG3842 155 PKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIE 216 (352)
T ss_pred cchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCcee
Confidence 9999999999999999999999988887778899999999998744 589999999998874
No 83
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.1e-25 Score=234.76 Aligned_cols=167 Identities=20% Similarity=0.284 Sum_probs=134.5
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh--------------------hhhce
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL 299 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------------aq~G~ 299 (752)
|++++||++.|+++.+ ++||++.+| ++++|+||||+||||||++| |+..+- .+...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSG-EIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 6889999999987666 999999999 99999999999999999999 665321 01123
Q ss_pred eecCCCC--CCchHH----------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEE
Q 004463 300 YLPAKNH--PRLPWF----------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 354 (752)
Q Consensus 300 ~vP~~~~--~~l~~~----------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLL 354 (752)
|+|+... ..+++. +.++..+|+.+..++.+.+||+||+ |++++++++.+|++|||
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 161 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILL 161 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 6666531 112222 2334555666667888999999999 89999999999999999
Q ss_pred eCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 355 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 355 DEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
||||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 162 DEPt~~LD~~~~~~l~~-~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~ 218 (241)
T PRK10895 162 DEPFAGVDPISVIDIKR-IIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAH 218 (241)
T ss_pred cCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEee
Confidence 99999999999999988 55566667899999999986 7789999999999988654
No 84
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.5e-25 Score=232.70 Aligned_cols=167 Identities=20% Similarity=0.238 Sum_probs=131.7
Q ss_pred CeEEEcccccccCC----eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh--------------------
Q 004463 242 SEMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------- 294 (752)
Q Consensus 242 ~~l~~~~ls~~y~~----~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------- 294 (752)
.|++++||++.|++ .++ ++||++.+| ++++|+||||||||||||+| |++.+.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEG-EMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHH
Confidence 47889999999974 344 999999999 99999999999999999999 665320
Q ss_pred ---hhhceeecCCCC--CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccC
Q 004463 295 ---SKAGLYLPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS 347 (752)
Q Consensus 295 ---aq~G~~vP~~~~--~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~ 347 (752)
.+.-.|+|+... ..+++. ..++..+|+.+..++.+.+|||||+ |++++++++.
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~ 162 (233)
T PRK11629 83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVN 162 (233)
T ss_pred HHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 012346676631 111222 2345667777778889999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhcccccccCCceee
Q 004463 348 RESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 348 ~~~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~l~~~a~~~~~i~~g~v~~ 410 (752)
+|+++||||||+|||+.....+.. ++..+.+ .|.|+|++||+.+....+++++.+.+|++..
T Consensus 163 ~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~ 225 (233)
T PRK11629 163 NPRLVLADEPTGNLDARNADSIFQ-LLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTA 225 (233)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEE
Confidence 999999999999999999999998 4555554 5889999999998655556778888888754
No 85
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=9.7e-26 Score=248.04 Aligned_cols=168 Identities=18% Similarity=0.203 Sum_probs=136.2
Q ss_pred eEEEccccccc-CCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------hhhceee
Q 004463 243 EMTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYL 301 (752)
Q Consensus 243 ~l~~~~ls~~y-~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------aq~G~~v 301 (752)
|++++||++.| ++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|+
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~G-e~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 81 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADG-EFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMV 81 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCC-CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 68899999999 66555 899999999 99999999999999999999 665431 1112356
Q ss_pred cCCCC--CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCC
Q 004463 302 PAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 357 (752)
Q Consensus 302 P~~~~--~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp 357 (752)
|++.. ..+++. +.++..+|+.+..++.+.+|||||+ |++++++++.+|++||||||
T Consensus 82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP 161 (356)
T PRK11650 82 FQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEP 161 (356)
T ss_pred eCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 66531 122222 2345667888889999999999999 89999999999999999999
Q ss_pred CCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 358 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 358 ~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
|++||+..+..+...+.+...+.|.|+|++|||.+ ...+||++..+.+|++...
T Consensus 162 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~ 216 (356)
T PRK11650 162 LSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQI 216 (356)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEE
Confidence 99999999999999655544445899999999977 6679999999999988644
No 86
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.1e-25 Score=239.34 Aligned_cols=167 Identities=16% Similarity=0.122 Sum_probs=134.7
Q ss_pred eEEEcccccccC-CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhhce
Q 004463 243 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 299 (752)
Q Consensus 243 ~l~~~~ls~~y~-~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~G~ 299 (752)
|++++||++.|+ +..+ ++||++.+| ++++|+|||||||||||++| |++.+. .+.-.
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEG-SKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 678999999996 4444 999999999 99999999999999999999 665431 11124
Q ss_pred eecCCCC---CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEE
Q 004463 300 YLPAKNH---PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 354 (752)
Q Consensus 300 ~vP~~~~---~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLL 354 (752)
|+|+... ...++. +.++..+|+....++.+.+|||||+ |++++++++.+|++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llll 162 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVL 162 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 6666531 111222 2345566777788899999999999 89999999999999999
Q ss_pred eCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 355 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 355 DEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
||||+|||+.....+.. ++..+.+.|.|+|++||+++. ..+|++++.+.+|.+..+
T Consensus 163 DEPt~~LD~~~~~~l~~-~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~ 219 (274)
T PRK13647 163 DEPMAYLDPRGQETLME-ILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAE 219 (274)
T ss_pred ECCCcCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999998 555566568999999999985 579999999999998755
No 87
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.93 E-value=4.7e-26 Score=223.94 Aligned_cols=154 Identities=19% Similarity=0.218 Sum_probs=119.7
Q ss_pred EEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCc
Q 004463 245 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDH 322 (752)
Q Consensus 245 ~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~ 322 (752)
+++|+++.|++.++ ++||++.+| ++++|+||||+||||||+++ +|...|..|...+...+ + ......
T Consensus 2 ~~~~l~~~~~~~~vl~~i~~~i~~G-e~~~l~G~nGsGKSTLl~~i--------~G~~~~~~G~v~~~g~~-~-~~~~~~ 70 (163)
T cd03216 2 ELRGITKRFGGVKALDGVSLSVRRG-EVHALLGENGAGKSTLMKIL--------SGLYKPDSGEILVDGKE-V-SFASPR 70 (163)
T ss_pred EEEEEEEEECCeEEEeeeEEEEeCC-CEEEEECCCCCCHHHHHHHH--------hCCCCCCCeEEEECCEE-C-CcCCHH
Confidence 57899999988666 999999999 99999999999999999999 88777776632221100 0 000000
Q ss_pred hhhhcC---cccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhh
Q 004463 323 QSLEQN---LSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLK 397 (752)
Q Consensus 323 ~~i~~~---~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a 397 (752)
+...+. +..||+||+ |++++++++.+|+++||||||+|||+.....+...+ ..+.+.+.|+|++||+.+ +..+|
T Consensus 71 ~~~~~~i~~~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l-~~~~~~~~tiii~sh~~~~~~~~~ 149 (163)
T cd03216 71 DARRAGIAMVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVI-RRLRAQGVAVIFISHRLDEVFEIA 149 (163)
T ss_pred HHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHH-HHHHHCCCEEEEEeCCHHHHHHhC
Confidence 011111 223999999 899999999999999999999999999999999844 455666889999999987 66789
Q ss_pred cccccccCCceee
Q 004463 398 DKDTRFENAATEF 410 (752)
Q Consensus 398 ~~~~~i~~g~v~~ 410 (752)
++.+.+.+|++.+
T Consensus 150 d~~~~l~~g~i~~ 162 (163)
T cd03216 150 DRVTVLRDGRVVG 162 (163)
T ss_pred CEEEEEECCEEEe
Confidence 9999999987653
No 88
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.93 E-value=9.8e-26 Score=243.11 Aligned_cols=158 Identities=22% Similarity=0.292 Sum_probs=126.8
Q ss_pred ccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------------------hhhceeecCCCC--CC
Q 004463 252 GISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLPAKNH--PR 308 (752)
Q Consensus 252 ~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------aq~G~~vP~~~~--~~ 308 (752)
.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+. .+.-.|+|+... ..
T Consensus 2 ~y~~~~~l~~vs~~i~~G-e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 2 VYGDFKAVDGVNFKVREG-EVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred eeCCeeEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 4555554 999999999 99999999999999999999 666431 111236676541 11
Q ss_pred chH---------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhH
Q 004463 309 LPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 366 (752)
Q Consensus 309 l~~---------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~ 366 (752)
+++ ++.++..+|+.+..++.+++|||||+ |++++++++.+|++|||||||+||||...
T Consensus 81 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 160 (302)
T TIGR01188 81 LTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTR 160 (302)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 222 23346667888788999999999999 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 367 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 367 ~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
..+.. ++..+.+.|.|+|++||+++ +..+|+++..+.+|++...
T Consensus 161 ~~l~~-~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~ 205 (302)
T TIGR01188 161 RAIWD-YIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAE 205 (302)
T ss_pred HHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99998 55556666899999999987 5569999999999998754
No 89
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.93 E-value=1.3e-25 Score=230.75 Aligned_cols=165 Identities=23% Similarity=0.318 Sum_probs=130.6
Q ss_pred EEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------------------hhhcee
Q 004463 244 MTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLY 300 (752)
Q Consensus 244 l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------aq~G~~ 300 (752)
|+++||++.|++ .++ ++||++.+| ++++|+||||||||||||+| |+..+. .+...|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKG-EIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 357899999976 555 999999999 99999999999999999999 665421 011235
Q ss_pred ecCCCCC--CchH---------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeC
Q 004463 301 LPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 356 (752)
Q Consensus 301 vP~~~~~--~l~~---------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDE 356 (752)
+|+.... ..++ ++.++..+++.+..++.+++||+||+ |++++++++.+|+++||||
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 159 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDE 159 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 5654311 1122 12345667777778889999999999 8999999999999999999
Q ss_pred CCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 357 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 357 p~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
||+|+|+.....+.. ++..+.+ +.|+|++||+++. ..+|++++.+.+|++...
T Consensus 160 P~~~LD~~~~~~l~~-~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 213 (220)
T cd03263 160 PTSGLDPASRRAIWD-LILEVRK-GRSIILTTHSMDEAEALCDRIAIMSDGKLRCI 213 (220)
T ss_pred CCCCCCHHHHHHHHH-HHHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEec
Confidence 999999999999998 4455555 5899999999884 568999999999987654
No 90
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.6e-25 Score=235.63 Aligned_cols=167 Identities=17% Similarity=0.212 Sum_probs=134.4
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhhcee
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 300 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~G~~ 300 (752)
|++++|++++|++..+ ++||++.+| ++++|+|||||||||||++| |++.+- .+...|
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTG-KITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 6889999999998766 999999999 99999999999999999999 665321 112346
Q ss_pred ecCCCCC--CchHH-------------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEE
Q 004463 301 LPAKNHP--RLPWF-------------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 352 (752)
Q Consensus 301 vP~~~~~--~l~~~-------------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~Ll 352 (752)
+|+.... .+++. +.++..+|+....++.+.+|||||+ |++++++++.+|+++
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 160 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVV 160 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 6665311 11221 2234556777777899999999999 899999999999999
Q ss_pred EEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 353 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 353 LLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
||||||+|+|+.....+...+ ..+.+.+.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 161 llDEP~~~LD~~~~~~l~~~l-~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 219 (255)
T PRK11231 161 LLDEPTTYLDINHQVELMRLM-RELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQ 219 (255)
T ss_pred EEcCCcccCCHHHHHHHHHHH-HHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEE
Confidence 999999999999999999855 446656889999999988 5679999999999987643
No 91
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.2e-25 Score=248.74 Aligned_cols=168 Identities=20% Similarity=0.235 Sum_probs=135.7
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------hhhceeec
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 302 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------aq~G~~vP 302 (752)
+++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|+|
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~G-e~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~ 81 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEG-EFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF 81 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe
Confidence 5789999999988665 999999999 99999999999999999999 665431 11123666
Q ss_pred CCCC--CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCC
Q 004463 303 AKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 358 (752)
Q Consensus 303 ~~~~--~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~ 358 (752)
++.. ..+++. +.++..+|+.+..++.+++|||||+ |++++++++.+|++|||||||
T Consensus 82 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPt 161 (369)
T PRK11000 82 QSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (369)
T ss_pred CCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 6531 122222 2345667787888999999999999 899999999999999999999
Q ss_pred CCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 359 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 359 ~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+|||+..+..+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 162 s~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~ 215 (369)
T PRK11000 162 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV 215 (369)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999998555544445889999999987 5679999999999988654
No 92
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.93 E-value=1.2e-25 Score=230.09 Aligned_cols=159 Identities=24% Similarity=0.330 Sum_probs=126.9
Q ss_pred EcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh--------------hhhceeecCCCCC-
Q 004463 246 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------SKAGLYLPAKNHP- 307 (752)
Q Consensus 246 ~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------aq~G~~vP~~~~~- 307 (752)
++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+...|+|+....
T Consensus 2 ~~~l~~~~~~~~~l~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 80 (213)
T cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPG-EFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSID 80 (213)
T ss_pred cccceeEECCEEeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccc
Confidence 5789999987665 999999999 99999999999999999999 665421 1122466665311
Q ss_pred ---CchH-------------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCC
Q 004463 308 ---RLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 358 (752)
Q Consensus 308 ---~l~~-------------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~ 358 (752)
..++ +..++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 160 (213)
T cd03235 81 RDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPF 160 (213)
T ss_pred cCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 1122 22345556777778899999999999 899999999999999999999
Q ss_pred CCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCC
Q 004463 359 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENA 406 (752)
Q Consensus 359 ~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g 406 (752)
+|||+.....+...+.+ +.+.+.|+|++||+.+ +..+|++++.+.++
T Consensus 161 ~~LD~~~~~~l~~~l~~-~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~ 208 (213)
T cd03235 161 AGVDPKTQEDIYELLRE-LRREGMTILVVTHDLGLVLEYFDRVLLLNRT 208 (213)
T ss_pred ccCCHHHHHHHHHHHHH-HHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc
Confidence 99999999999995554 5556889999999987 55789999888765
No 93
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.4e-25 Score=238.65 Aligned_cols=167 Identities=20% Similarity=0.180 Sum_probs=133.7
Q ss_pred eEEEcccccccC-CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh--------------------hhhc
Q 004463 243 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAG 298 (752)
Q Consensus 243 ~l~~~~ls~~y~-~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------------aq~G 298 (752)
|++++||++.|+ +..+ ++||+|.+| ++++|+||||+|||||||+| |++.+. .+..
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKG-EYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 578999999995 4444 999999999 99999999999999999999 665321 1112
Q ss_pred eeecCCCC---CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEE
Q 004463 299 LYLPAKNH---PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 353 (752)
Q Consensus 299 ~~vP~~~~---~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlL 353 (752)
.|+|+... ...++. ..++..+|+....++.+..||+||+ |++++++++.+|++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 159 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLI 159 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 35666531 112222 2335556777788899999999999 8999999999999999
Q ss_pred EeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 354 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 354 LDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
|||||+|||+.....+.. ++..+.+.|.|+|++||+++....|+++..+.+|.+...
T Consensus 160 LDEPt~gLD~~~~~~l~~-~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~ 216 (274)
T PRK13644 160 FDEVTSMLDPDSGIAVLE-RIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLE 216 (274)
T ss_pred EeCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEE
Confidence 999999999999999988 455566668999999999886677999999999988654
No 94
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.93 E-value=1.2e-25 Score=247.05 Aligned_cols=168 Identities=21% Similarity=0.235 Sum_probs=138.0
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------hhhceeec
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 302 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------aq~G~~vP 302 (752)
||+++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|+|
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~ 82 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKG-EFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVF 82 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 6889999999998765 899999999 99999999999999999999 665431 12234666
Q ss_pred CCCC--CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCC
Q 004463 303 AKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 358 (752)
Q Consensus 303 ~~~~--~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~ 358 (752)
++.. ..+++. +.++..+++.+..++.+.+|||||+ |++++++++.+|+++|||||+
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~ 162 (353)
T TIGR03265 83 QSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPL 162 (353)
T ss_pred CCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 6531 122332 3346667888888999999999999 899999999999999999999
Q ss_pred CCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 359 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 359 ~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
++||+..+..+...+.+...+.+.|+|++||+.+ ...+||++..+.+|++...
T Consensus 163 s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~ 216 (353)
T TIGR03265 163 SALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQV 216 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999666554556899999999988 5679999999999998654
No 95
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.93 E-value=2.1e-25 Score=231.63 Aligned_cols=165 Identities=22% Similarity=0.249 Sum_probs=131.6
Q ss_pred EEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh--------------------hhhceee
Q 004463 245 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLYL 301 (752)
Q Consensus 245 ~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------------aq~G~~v 301 (752)
+++||++.|++..+ ++||++.+| ++++|+||||||||||||++ |++.+. .....|+
T Consensus 2 ~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 2 EVRGLTKRFGGLVALDDVSFSVRPG-EIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred eeeeeEEEECCEEEecCceEEecCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 57899999987655 999999999 99999999999999999999 665421 0112366
Q ss_pred cCCCC--CCchH-------------------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccC
Q 004463 302 PAKNH--PRLPW-------------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS 347 (752)
Q Consensus 302 P~~~~--~~l~~-------------------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~ 347 (752)
|+... ..+++ +..++..+|+....++.+++|||||+ |++++++++.
T Consensus 81 ~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 160 (236)
T cd03219 81 FQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALAT 160 (236)
T ss_pred ecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 66531 11111 22345556777777889999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 348 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 348 ~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
+|+++||||||+|||+.....+...+ ..+.+.+.|+|++||+.+. ..+|++++.+.+|++...
T Consensus 161 ~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~ 224 (236)
T cd03219 161 DPKLLLLDEPAAGLNPEETEELAELI-RELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAE 224 (236)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHH-HHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEee
Confidence 99999999999999999999999844 4555568899999999884 568999999999987643
No 96
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.2e-25 Score=233.75 Aligned_cols=168 Identities=20% Similarity=0.233 Sum_probs=132.5
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh--------------------hhhhc
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------------------MSKAG 298 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~--------------------~aq~G 298 (752)
.|++++||++.|++.++ ++||++.+| ++++|+|||||||||||+++ |+..+ ..+..
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQG-EIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred cEEEEEeEEEeeCCceeeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 47889999999987665 999999999 99999999999999999999 66532 11122
Q ss_pred eeecCCCC--CCchHHHHH-------------------HHHc-CCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEe
Q 004463 299 LYLPAKNH--PRLPWFDLI-------------------LADI-GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 355 (752)
Q Consensus 299 ~~vP~~~~--~~l~~~d~i-------------------~~~i-g~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLD 355 (752)
.|+|+... ..+++++++ +..+ +..+..+..+++||+||+ |++++++++.+|+++|||
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlD 162 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLD 162 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEc
Confidence 35666531 112233322 3334 345556778899999999 899999999999999999
Q ss_pred CCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 356 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 356 Ep~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
|||+|+|+.....+... +..+.+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 163 EPt~~LD~~~~~~l~~~-l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (237)
T PRK11614 163 EPSLGLAPIIIQQIFDT-IEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLE 218 (237)
T ss_pred CccccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEee
Confidence 99999999999999884 4556666899999999987 6789999999999987654
No 97
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.2e-25 Score=234.34 Aligned_cols=167 Identities=16% Similarity=0.193 Sum_probs=134.5
Q ss_pred eEEEcccccccCCe----e--E-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh---------------------
Q 004463 243 EMTVGSLSKGISDF----P--V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------------------- 293 (752)
Q Consensus 243 ~l~~~~ls~~y~~~----~--v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~--------------------- 293 (752)
|+++++|+|.|+.. + + ++||++++| ++++|+|++|+|||||+|++ +|-.+
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~G-eI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr 79 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKG-EIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELR 79 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCC-cEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHH
Confidence 68899999999761 2 2 899999999 99999999999999999999 22211
Q ss_pred --hhhhceeecCCCC--CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccC
Q 004463 294 --MSKAGLYLPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS 347 (752)
Q Consensus 294 --~aq~G~~vP~~~~--~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~ 347 (752)
..++| +++|..+ ...++| ..++..+|+.+..++.++.||||+| |++++++++.
T Consensus 80 ~~R~~IG-MIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~ 158 (339)
T COG1135 80 QLRQKIG-MIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALAN 158 (339)
T ss_pred HHHhhcc-EEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhc
Confidence 11233 3444431 112223 3457788999999999999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 348 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 348 ~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+|++||.|||||.|||.....+...+.+--.+.|.|++++||.++ ++.+|+++..+++|.++-.
T Consensus 159 ~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~ 223 (339)
T COG1135 159 NPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEE 223 (339)
T ss_pred CCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEe
Confidence 999999999999999999999998444433456899999999999 6779999999999988654
No 98
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.5e-25 Score=246.00 Aligned_cols=169 Identities=15% Similarity=0.158 Sum_probs=136.6
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------hhhceee
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYL 301 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------aq~G~~v 301 (752)
.||+++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+.-.++
T Consensus 5 ~~l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 5 NFVVLKNITKRFGSNTVIDNLNLTIKQG-TMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred cEEEEEeEEEEECCeEEEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 47899999999998765 899999999 99999999999999999999 665431 0112355
Q ss_pred cCCCC--CCchHHH---------------------HHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCC
Q 004463 302 PAKNH--PRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 357 (752)
Q Consensus 302 P~~~~--~~l~~~d---------------------~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp 357 (752)
|++.. ..+++.+ .++..+|+.+..++.+++|||||+ |++++++++.+|++||||||
T Consensus 84 fQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP 163 (351)
T PRK11432 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEP 163 (351)
T ss_pred eCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 65531 1223332 345566777788999999999999 89999999999999999999
Q ss_pred CCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 358 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 358 ~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+++||+..+..+...+.+...+.+.|+|++|||.+ ...+||++..+.+|.+...
T Consensus 164 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~ 218 (351)
T PRK11432 164 LSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQI 218 (351)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999998555444445899999999987 5579999999999988654
No 99
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.93 E-value=1.6e-25 Score=230.69 Aligned_cols=166 Identities=20% Similarity=0.212 Sum_probs=132.8
Q ss_pred EEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh---------------hhceeecCCC
Q 004463 244 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS---------------KAGLYLPAKN 305 (752)
Q Consensus 244 l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a---------------q~G~~vP~~~ 305 (752)
++++|+++.|++.++ ++||++.+| ++++|+||||+||||||+++ |++.+.. +...|+|+..
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~ 79 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKN-SVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP 79 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCC
Confidence 357899999987666 999999999 99999999999999999999 6654310 1123556543
Q ss_pred C--CCchHH-----------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHh
Q 004463 306 H--PRLPWF-----------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 365 (752)
Q Consensus 306 ~--~~l~~~-----------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~ 365 (752)
. ..+++. ..++..+|+.+..++.+..||+||+ |++++++++.+|+++||||||+|+|+..
T Consensus 80 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~ 159 (223)
T TIGR03740 80 PLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIG 159 (223)
T ss_pred CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHH
Confidence 1 112222 2345567787788899999999999 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 366 GVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 366 ~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
...+...+. .+.+.+.++|++||+.+. ..+|++++.+.+|.+...
T Consensus 160 ~~~l~~~L~-~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~ 205 (223)
T TIGR03740 160 IQELRELIR-SFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQ 205 (223)
T ss_pred HHHHHHHHH-HHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEe
Confidence 999998554 556668899999999885 579999999999987654
No 100
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.93 E-value=2e-25 Score=235.39 Aligned_cols=168 Identities=18% Similarity=0.181 Sum_probs=134.0
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhhcee
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 300 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~G~~ 300 (752)
|+.++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |++.+. .+...|
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPG-EVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 6889999999987665 999999999 99999999999999999999 665421 111236
Q ss_pred ecCCCCC--CchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHcc------CCCc
Q 004463 301 LPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV------SRES 350 (752)
Q Consensus 301 vP~~~~~--~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la------~~~~ 350 (752)
+|+.... .+++. ..++..+|+.+..++.+.+|||||+ |++++++++ .+|+
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~ 160 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPR 160 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCC
Confidence 6665321 12222 2345556777778899999999999 899999999 5999
Q ss_pred EEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 351 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 351 LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
++||||||+|||+.....+...+.+...+.+.|||++||+++ +..+|++++.+.+|++...
T Consensus 161 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 222 (258)
T PRK13548 161 WLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVAD 222 (258)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEee
Confidence 999999999999999999998555543266889999999988 4569999999999987643
No 101
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.8e-25 Score=232.42 Aligned_cols=168 Identities=17% Similarity=0.259 Sum_probs=134.2
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhhc-
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG- 298 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~G- 298 (752)
.|++++||++.|++.++ ++||++.+| ++++|+|||||||||||++| |++.+. .+.+
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 4 PLLSVSGLMMRFGGLLAVNNVNLEVREQ-EIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred ceEEEeeEEEEECCEEEEEeeeeEEcCC-eEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 47899999999987666 999999999 99999999999999999999 665421 1122
Q ss_pred eeecCCCC--CCchHH------------------------------------HHHHHHcCCchhhhcCcccchHHHH-HH
Q 004463 299 LYLPAKNH--PRLPWF------------------------------------DLILADIGDHQSLEQNLSTFSGHIS-RI 339 (752)
Q Consensus 299 ~~vP~~~~--~~l~~~------------------------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl 339 (752)
.|+|+... ..+++. ..++..+|+.+..++.+.+||+||+ |+
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv 162 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRL 162 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHH
Confidence 24566531 111222 2234456777778899999999999 89
Q ss_pred HHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 340 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 340 ~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
.++++++.+|++|||||||+|||+.....+.. ++..+.+ .+.|+|++||+.+. ..+|++++.+.+|++...
T Consensus 163 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 235 (255)
T PRK11300 163 EIARCMVTQPEILMLDEPAAGLNPKETKELDE-LIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLAN 235 (255)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH-HHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEec
Confidence 99999999999999999999999999999988 4445555 48899999999884 578999999999988654
No 102
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=3.4e-26 Score=224.77 Aligned_cols=168 Identities=23% Similarity=0.350 Sum_probs=144.9
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------------------hhhhce
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGL 299 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------~aq~G~ 299 (752)
.++.++||.|+|+.+.| ++||++.+| +++++.||||+||||++.++ |++.+ .|++|.
T Consensus 3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~G-EiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 3 STLVAENLAKSYKKRKVVNDVSLEVNSG-EIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred cEEEehhhhHhhCCeeeeeeeeEEEcCC-cEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 46789999999998887 999999999 99999999999999999998 77753 356664
Q ss_pred -eecCCCC--CCchH-----------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEE
Q 004463 300 -YLPAKNH--PRLPW-----------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 352 (752)
Q Consensus 300 -~vP~~~~--~~l~~-----------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~Ll 352 (752)
|.||+.+ -.+++ .+.++..+++.+..+++..+||||++ |+-+|++++.+|+++
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fi 161 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFI 161 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEE
Confidence 8888762 12333 33456677777888899999999999 788899999999999
Q ss_pred EEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecc-hhHHhhhcccccccCCceeec
Q 004463 353 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY-ADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 353 LLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~-~~l~~~a~~~~~i~~g~v~~~ 411 (752)
||||||+|.||..-..+-. ++.+|+++|.-|++|-|+ .+...+||+.+.+..|++.+.
T Consensus 162 LLDEPFAGVDPiaV~dIq~-iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~ 220 (243)
T COG1137 162 LLDEPFAGVDPIAVIDIQR-IIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAE 220 (243)
T ss_pred EecCCccCCCchhHHHHHH-HHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEec
Confidence 9999999999999999988 899999999999999999 567889999999999998765
No 103
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.93 E-value=2e-25 Score=230.26 Aligned_cols=166 Identities=17% Similarity=0.173 Sum_probs=129.6
Q ss_pred eEEEcccccccCCe----eE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh---------------------
Q 004463 243 EMTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 294 (752)
Q Consensus 243 ~l~~~~ls~~y~~~----~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------------- 294 (752)
|++++||++.|++. .+ ++||++.+| ++++|+|||||||||||+++ |++.+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKG-ETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKI 79 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHH
Confidence 46789999999764 44 999999999 99999999999999999999 665321
Q ss_pred -hhhceeecCCCC----CCchHHH-----------------------HHHHHcCCc-hhhhcCcccchHHHH-HHHHHHH
Q 004463 295 -SKAGLYLPAKNH----PRLPWFD-----------------------LILADIGDH-QSLEQNLSTFSGHIS-RIVDILE 344 (752)
Q Consensus 295 -aq~G~~vP~~~~----~~l~~~d-----------------------~i~~~ig~~-~~i~~~~stlSgg~k-rl~~i~~ 344 (752)
.+...|+|+... ..+++.+ .++..+++. ...++.+.+||+||+ |++++++
T Consensus 80 ~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara 159 (228)
T cd03257 80 RRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARA 159 (228)
T ss_pred hhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHH
Confidence 011235666531 1122211 234456664 467888999999999 8999999
Q ss_pred ccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCcee
Q 004463 345 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATE 409 (752)
Q Consensus 345 la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~ 409 (752)
++.+|++|||||||+|||+.....+...+.+...+.|.|+|++||+.+. ..+|++++.+.+|.+.
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 225 (228)
T cd03257 160 LALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIV 225 (228)
T ss_pred HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEE
Confidence 9999999999999999999999999995555433348899999999885 4589999999998864
No 104
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=3.2e-25 Score=230.82 Aligned_cols=165 Identities=20% Similarity=0.262 Sum_probs=130.2
Q ss_pred EEcccccccCC-eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh----------------------hhhc
Q 004463 245 TVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SKAG 298 (752)
Q Consensus 245 ~~~~ls~~y~~-~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~----------------------aq~G 298 (752)
+++||+++|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+..
T Consensus 2 ~~~~l~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 2 EVENLSKTYPNGKKALKDVSLSINPG-EFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred EEeeEEEecCCccEEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 57899999986 555 999999999 99999999999999999999 665320 1112
Q ss_pred eeecCCCC--CCchHH-----------------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHcc
Q 004463 299 LYLPAKNH--PRLPWF-----------------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV 346 (752)
Q Consensus 299 ~~vP~~~~--~~l~~~-----------------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la 346 (752)
.|+|+... ..+++. ..++..+++....++.+.+|||||+ |++++++++
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 160 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALM 160 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHh
Confidence 46666531 112222 2234556777777889999999999 899999999
Q ss_pred CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 347 SRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 347 ~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
.+|++|||||||+|||+.....+...+ ..+.+ .|.|+|++||+.+. ..+|++++.+.+|++...
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~ 226 (241)
T cd03256 161 QQPKLILADEPVASLDPASSRQVMDLL-KRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFD 226 (241)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 999999999999999999999999844 45554 58899999999884 459999999999987643
No 105
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.93 E-value=1.5e-25 Score=231.42 Aligned_cols=165 Identities=18% Similarity=0.216 Sum_probs=126.8
Q ss_pred EEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhhh----hcee--ecCCC---CCCchH
Q 004463 244 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK----AGLY--LPAKN---HPRLPW 311 (752)
Q Consensus 244 l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~aq----~G~~--vP~~~---~~~l~~ 311 (752)
+.++++++.|++.++ ++||++.+| ++++|+||||||||||++++ |++.+-.- .|.. .+... ...+++
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv 101 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRG-ERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTG 101 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcH
Confidence 457889999998877 999999999 99999999999999999999 55432100 0000 00000 011122
Q ss_pred H---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHH
Q 004463 312 F---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVAL 369 (752)
Q Consensus 312 ~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L 369 (752)
. ..++..+++.+..++.+..||+||+ |++++++++.+|+++||||||+|||+.....+
T Consensus 102 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~ 181 (224)
T cd03220 102 RENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKC 181 (224)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 1 2234456777778889999999999 89999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 004463 370 ATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 410 (752)
Q Consensus 370 ~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~ 410 (752)
...+.+ +.+.+.|+|++||+.+ +..+|++++.+.+|++..
T Consensus 182 ~~~l~~-~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 222 (224)
T cd03220 182 QRRLRE-LLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222 (224)
T ss_pred HHHHHH-HHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 995554 4555889999999987 556899999999888653
No 106
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.7e-25 Score=237.05 Aligned_cols=167 Identities=19% Similarity=0.211 Sum_probs=133.9
Q ss_pred eEEEcccccccCC---e-eE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhh
Q 004463 243 EMTVGSLSKGISD---F-PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 297 (752)
Q Consensus 243 ~l~~~~ls~~y~~---~-~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~ 297 (752)
|++++||++.|++ . .+ ++||++.+| ++++|+||||||||||||++ |++.+. .+.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQG-EWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence 6889999999963 2 33 999999999 99999999999999999999 665321 112
Q ss_pred ceeecCCCC---CCchH---------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEE
Q 004463 298 GLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 352 (752)
Q Consensus 298 G~~vP~~~~---~~l~~---------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~Ll 352 (752)
..|+|+... ...++ ++.++..+|+.+..++.+.+|||||+ |++++++++.+|++|
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lL 162 (279)
T PRK13650 83 IGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKII 162 (279)
T ss_pred ceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 236666531 11122 23345667888888999999999998 899999999999999
Q ss_pred EEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 353 LIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 353 LLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
||||||+|||+.....+.. ++..+.+ .|.|+|++||+.+...+|++++.+.+|++..+
T Consensus 163 lLDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~ 221 (279)
T PRK13650 163 ILDEATSMLDPEGRLELIK-TIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVEST 221 (279)
T ss_pred EEECCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999988 4455554 48999999999886578999999999998755
No 107
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.4e-25 Score=231.21 Aligned_cols=167 Identities=18% Similarity=0.192 Sum_probs=132.5
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhhcee
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 300 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~G~~ 300 (752)
+++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+...|
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGG-AIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 5789999999987665 999999999 99999999999999999999 665321 112235
Q ss_pred ecCCCCC-CchH-----------------HHHHHHHcCCc-hhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCC
Q 004463 301 LPAKNHP-RLPW-----------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 360 (752)
Q Consensus 301 vP~~~~~-~l~~-----------------~d~i~~~ig~~-~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~g 360 (752)
+|+.... ..++ ...++..+|+. +..++.+..||+||+ |++++++++.+|+++||||||+|
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 161 (241)
T PRK14250 82 VFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSA 161 (241)
T ss_pred EecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 6665310 0111 22345667775 467889999999999 89999999999999999999999
Q ss_pred CChHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 361 TDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 361 lD~~~~~~L~~all~~l~~-~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
||+.....+...+ ..+.+ .|.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 162 LD~~~~~~l~~~l-~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 213 (241)
T PRK14250 162 LDPTSTEIIEELI-VKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEY 213 (241)
T ss_pred CCHHHHHHHHHHH-HHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 9999999998844 45554 5889999999988 4668999999999987643
No 108
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.4e-25 Score=238.56 Aligned_cols=167 Identities=17% Similarity=0.148 Sum_probs=133.3
Q ss_pred eEEEcccccccCCe------eE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh--------------------
Q 004463 243 EMTVGSLSKGISDF------PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------- 294 (752)
Q Consensus 243 ~l~~~~ls~~y~~~------~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------- 294 (752)
|++++||++.|+.. .+ ++||++.+| ++++|+||||||||||||+| |++.+-
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~G-e~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 79 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKG-SYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEI 79 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCC-CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccH
Confidence 67899999999731 33 999999999 99999999999999999999 665321
Q ss_pred ---hhhceeecCCCC---CCchHH---------------------HHHHHHcCCc-hhhhcCcccchHHHH-HHHHHHHc
Q 004463 295 ---SKAGLYLPAKNH---PRLPWF---------------------DLILADIGDH-QSLEQNLSTFSGHIS-RIVDILEL 345 (752)
Q Consensus 295 ---aq~G~~vP~~~~---~~l~~~---------------------d~i~~~ig~~-~~i~~~~stlSgg~k-rl~~i~~l 345 (752)
.+...|+|+... ...++. ..++..+|+. +..++.+.+|||||+ |+++++++
T Consensus 80 ~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 80 KPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 111236666531 111222 2335556775 456899999999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 346 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 346 a~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
+.+|++|||||||+|||+..+..+.. ++..+.+.|.|||++||+++. ..+|++++.+.+|.+.++
T Consensus 160 ~~~p~illLDEPt~gLD~~~~~~l~~-~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~ 225 (288)
T PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQ-LFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISC 225 (288)
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999988 566676678999999999884 579999999999998765
No 109
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.9e-25 Score=237.77 Aligned_cols=166 Identities=15% Similarity=0.157 Sum_probs=133.2
Q ss_pred EEEcccccccCC-----eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh---------------------
Q 004463 244 MTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 294 (752)
Q Consensus 244 l~~~~ls~~y~~-----~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------------- 294 (752)
++++||++.|++ .++ ++||++.+| ++++|+|||||||||||++| |++.+.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDG-EFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 789999999974 234 999999999 99999999999999999999 665321
Q ss_pred hhhceeecCCCC---CCchHH---------------------HHHHHHcCCc--hhhhcCcccchHHHH-HHHHHHHccC
Q 004463 295 SKAGLYLPAKNH---PRLPWF---------------------DLILADIGDH--QSLEQNLSTFSGHIS-RIVDILELVS 347 (752)
Q Consensus 295 aq~G~~vP~~~~---~~l~~~---------------------d~i~~~ig~~--~~i~~~~stlSgg~k-rl~~i~~la~ 347 (752)
.+...|+|+... ...++. +.++..+|+. ...++.++.|||||+ |++++++++.
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~ 161 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence 112347777631 112222 2345667776 567889999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 348 RESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 348 ~~~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
+|++|||||||+|||+.....+.. ++..+.+ .|.|||++||+++. ..+|++++.+.+|.+..+
T Consensus 162 ~P~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~ 226 (287)
T PRK13637 162 EPKILILDEPTAGLDPKGRDEILN-KIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQ 226 (287)
T ss_pred CCCEEEEECCccCCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999998 4555554 48899999999885 568999999999998765
No 110
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.5e-25 Score=234.40 Aligned_cols=169 Identities=15% Similarity=0.176 Sum_probs=135.1
Q ss_pred CCeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhhc
Q 004463 241 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 298 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~G 298 (752)
+.|++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+. .+..
T Consensus 9 ~~~l~i~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 9 DTTFALRNVSFRVPGRTLLHPLSLTFPAG-KVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred CceEEEeeEEEEECCEEEEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 357899999999987665 999999999 99999999999999999999 665421 1122
Q ss_pred eeecCCCC--CCchH-------------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCc
Q 004463 299 LYLPAKNH--PRLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES 350 (752)
Q Consensus 299 ~~vP~~~~--~~l~~-------------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~ 350 (752)
.|+|+... ..+++ ++.++..+++.+.+++.+.+|||||+ |++++++++.+|+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ 167 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSR 167 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 46666521 11111 22345666777778889999999999 8999999999999
Q ss_pred EEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 351 LVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 351 LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
++||||||+|||+.....+...+. .+.+ .+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 168 lllLDEPt~~LD~~~~~~~~~~l~-~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~ 229 (265)
T PRK10575 168 CLLLDEPTSALDIAHQVDVLALVH-RLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQ 229 (265)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEe
Confidence 999999999999999999998554 4554 4889999999988 5579999999999987643
No 111
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.93 E-value=3.7e-25 Score=230.75 Aligned_cols=166 Identities=21% Similarity=0.209 Sum_probs=132.1
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hh-hce
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SK-AGL 299 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq-~G~ 299 (752)
|++++||++.|++..+ ++||++.+| ++++|+||||+|||||||++ |++.+. .+ .-.
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPG-ELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 6789999999987655 999999999 99999999999999999999 665321 01 122
Q ss_pred eecCCCC--CCchH-----------------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccC
Q 004463 300 YLPAKNH--PRLPW-----------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS 347 (752)
Q Consensus 300 ~vP~~~~--~~l~~-----------------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~ 347 (752)
|+|+... ..+++ ++.++..+|+.+..++.+++||+||+ |+.++++++.
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~ 160 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQ 160 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 5555431 11121 12345556777778899999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 348 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 348 ~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+|+++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 161 ~p~~lllDEPt~~LD~~~~~~l~~~l-~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~ 223 (242)
T TIGR03411 161 DPKLLLLDEPVAGMTDEETEKTAELL-KSLAG-KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAE 223 (242)
T ss_pred CCCEEEecCCccCCCHHHHHHHHHHH-HHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCeEEee
Confidence 99999999999999999999999844 44555 689999999988 4568999999999987644
No 112
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.93 E-value=3.4e-25 Score=232.83 Aligned_cols=166 Identities=20% Similarity=0.260 Sum_probs=131.5
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh--------hhceeecCCCCC--C
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNHP--R 308 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a--------q~G~~vP~~~~~--~ 308 (752)
.|++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+.. ....|+|+.... .
T Consensus 3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~G-e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~ 81 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPG-KILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTT 81 (251)
T ss_pred cEEEEeceEEEECCceEEEeEEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccc
Confidence 37889999999987666 999999999 99999999999999999999 6654321 112366665311 1
Q ss_pred c--hH--------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHH
Q 004463 309 L--PW--------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALAT 371 (752)
Q Consensus 309 l--~~--------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~ 371 (752)
+ ++ +..++..+|+.+.+++.+.+||+||+ |++++++++.+|+++||||||+|||+.....+..
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 161 (251)
T PRK09544 82 LPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYD 161 (251)
T ss_pred cChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 1 11 22345677888888999999999999 8999999999999999999999999999999998
Q ss_pred HHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCcee
Q 004463 372 SILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATE 409 (752)
Q Consensus 372 all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~ 409 (752)
.+.+...+.+.|+|++||+.+. ..+|++++.+.+ .+.
T Consensus 162 ~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~ 199 (251)
T PRK09544 162 LIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HIC 199 (251)
T ss_pred HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceE
Confidence 5554333348899999999884 578999888864 443
No 113
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3e-25 Score=237.65 Aligned_cols=167 Identities=15% Similarity=0.126 Sum_probs=133.3
Q ss_pred eEEEcccccccCC-----eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh--------------------
Q 004463 243 EMTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------- 294 (752)
Q Consensus 243 ~l~~~~ls~~y~~-----~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------- 294 (752)
++.++||++.|++ +.+ ++||++.+| ++++|+||||+|||||||+| |++.+-
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~G-e~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEG-SFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNL 80 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 4678999999974 234 999999999 99999999999999999999 665321
Q ss_pred ---hhhceeecCCC---CCCchHHH---------------------HHHHHcCCc-hhhhcCcccchHHHH-HHHHHHHc
Q 004463 295 ---SKAGLYLPAKN---HPRLPWFD---------------------LILADIGDH-QSLEQNLSTFSGHIS-RIVDILEL 345 (752)
Q Consensus 295 ---aq~G~~vP~~~---~~~l~~~d---------------------~i~~~ig~~-~~i~~~~stlSgg~k-rl~~i~~l 345 (752)
.+...|+|+.. ....++.+ .++..+|+. ...++.+++||+||+ |+++++++
T Consensus 81 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral 160 (287)
T PRK13641 81 KKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM 160 (287)
T ss_pred HHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence 01124666653 11123222 335556775 567899999999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 346 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 346 a~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+.+|++|||||||+|||+.....+.. ++..+.+.|.|+|++||+++ +..+|++++.+.+|.+...
T Consensus 161 ~~~p~lLlLDEPt~gLD~~~~~~l~~-~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~ 226 (287)
T PRK13641 161 AYEPEILCLDEPAAGLDPEGRKEMMQ-LFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKH 226 (287)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999988 55666667899999999988 5679999999999988654
No 114
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.93 E-value=3e-25 Score=225.24 Aligned_cols=169 Identities=19% Similarity=0.196 Sum_probs=136.3
Q ss_pred CeEEEcccccccCCee----E--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh--------------------
Q 004463 242 SEMTVGSLSKGISDFP----V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------- 294 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~----v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------- 294 (752)
.|++++||++.|+... + +|||++.+| ++++|+|++|||||||.+++ |+...-
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~G-e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~ 80 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERG-ETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAF 80 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCC-CEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhh
Confidence 4789999999998766 4 999999999 99999999999999999999 554321
Q ss_pred hhhceeecCCCCCCch----H-------------------HHHHHHHcCCch-hhhcCcccchHHHH-HHHHHHHccCCC
Q 004463 295 SKAGLYLPAKNHPRLP----W-------------------FDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRE 349 (752)
Q Consensus 295 aq~G~~vP~~~~~~l~----~-------------------~d~i~~~ig~~~-~i~~~~stlSgg~k-rl~~i~~la~~~ 349 (752)
.+.-.+|+|++...+. + ..+++..+|+.. .+++.+..||||++ |++++++++.+|
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~P 160 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEP 160 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCC
Confidence 1122345555432221 1 235577778754 56889999999999 999999999999
Q ss_pred cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 350 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 350 ~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
++||+||||+.||+.-.+.+.+.+.+.-.+.+.|.||+|||..+ ..+|+++.+|.+|+++-.
T Consensus 161 klLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~ 223 (252)
T COG1124 161 KLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEI 223 (252)
T ss_pred CEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEe
Confidence 99999999999999999999995555555668899999999985 559999999999998654
No 115
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.3e-25 Score=239.15 Aligned_cols=167 Identities=16% Similarity=0.156 Sum_probs=134.4
Q ss_pred eEEEcccccccCCe------eE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh--------------------
Q 004463 243 EMTVGSLSKGISDF------PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------- 294 (752)
Q Consensus 243 ~l~~~~ls~~y~~~------~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------- 294 (752)
+|+++||++.|++. .+ ++||++.+| ++++|+|||||||||||++| |++.+.
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~G-e~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQG-EFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEK 80 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccc
Confidence 37899999999752 33 999999999 99999999999999999999 665321
Q ss_pred -----------------------hhhceeecCCCC---CCchH---------------------HHHHHHHcCCc-hhhh
Q 004463 295 -----------------------SKAGLYLPAKNH---PRLPW---------------------FDLILADIGDH-QSLE 326 (752)
Q Consensus 295 -----------------------aq~G~~vP~~~~---~~l~~---------------------~d~i~~~ig~~-~~i~ 326 (752)
.+...|+|+... ...++ +..++..+|+. +..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred cccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 011236676531 11122 23346667875 6789
Q ss_pred cCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhccccccc
Q 004463 327 QNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE 404 (752)
Q Consensus 327 ~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~ 404 (752)
+.+.+|||||+ |++++++++.+|++|||||||+|||+.....+.. ++..+.+.|.|||++||+++ +..+|++++.+.
T Consensus 161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~ 239 (305)
T PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILE-IFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFK 239 (305)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEE
Confidence 99999999999 8999999999999999999999999999999888 55667677899999999988 567999999999
Q ss_pred CCceeec
Q 004463 405 NAATEFS 411 (752)
Q Consensus 405 ~g~v~~~ 411 (752)
+|.+..+
T Consensus 240 ~G~i~~~ 246 (305)
T PRK13651 240 DGKIIKD 246 (305)
T ss_pred CCEEEEE
Confidence 9998765
No 116
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2.9e-25 Score=226.81 Aligned_cols=163 Identities=21% Similarity=0.334 Sum_probs=129.5
Q ss_pred EEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------------------hhhceeec
Q 004463 244 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP 302 (752)
Q Consensus 244 l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------aq~G~~vP 302 (752)
++++|+++.|++.++ ++||++.+| +++|+|||||||||||+++ |++.+. .+...|+|
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG--MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC--cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 357899999987665 999999997 8999999999999999999 665321 11224666
Q ss_pred CCCC--CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCC
Q 004463 303 AKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 358 (752)
Q Consensus 303 ~~~~--~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~ 358 (752)
+... ..+++. +.++..+|+.+..++.+.+||+||+ |++++++++.+|+++||||||
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 158 (211)
T cd03264 79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPT 158 (211)
T ss_pred CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 6542 111222 2335556777777889999999999 899999999999999999999
Q ss_pred CCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceee
Q 004463 359 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEF 410 (752)
Q Consensus 359 ~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~ 410 (752)
+|||+.....+.. ++..+.+ +.|+|++||+.+. ..+|++++.+.+|++..
T Consensus 159 ~~LD~~~~~~l~~-~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 159 AGLDPEERIRFRN-LLSELGE-DRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred ccCCHHHHHHHHH-HHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999988 5566665 4899999999885 56899999999987653
No 117
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.6e-25 Score=236.16 Aligned_cols=168 Identities=19% Similarity=0.154 Sum_probs=134.8
Q ss_pred CeEEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhh
Q 004463 242 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 297 (752)
Q Consensus 242 ~~l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~ 297 (752)
.|++++||++.|++ .++ ++||+|.+| ++++|+||||+||||||++| |++.+. .+.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEG-EWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhh
Confidence 37889999999974 334 999999999 99999999999999999999 665321 112
Q ss_pred ceeecCCC---CCCchH---------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEE
Q 004463 298 GLYLPAKN---HPRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 352 (752)
Q Consensus 298 G~~vP~~~---~~~l~~---------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~Ll 352 (752)
..|+|+.. ....++ ++.++..+|+.+.+++.+.+||+||+ |++++++++.+|+||
T Consensus 83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 162 (279)
T PRK13635 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDII 162 (279)
T ss_pred eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 23666543 111222 23345667888889999999999999 899999999999999
Q ss_pred EEeCCCCCCChHhHHHHHHHHHHHHhcC-CcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 353 LIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 353 LLDEp~~glD~~~~~~L~~all~~l~~~-~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
||||||+|||+.....+.. ++..+.+. |.|+|++||+++....|++++.+.+|.+..+
T Consensus 163 lLDEPt~gLD~~~~~~l~~-~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~ 221 (279)
T PRK13635 163 ILDEATSMLDPRGRREVLE-TVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEE 221 (279)
T ss_pred EEeCCcccCCHHHHHHHHH-HHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 9999999999999999998 55555554 8899999999886667999999999988655
No 118
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.93 E-value=2.7e-25 Score=229.99 Aligned_cols=166 Identities=25% Similarity=0.284 Sum_probs=129.8
Q ss_pred EEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh--------------------hhhcee
Q 004463 244 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY 300 (752)
Q Consensus 244 l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------------aq~G~~ 300 (752)
|+++||++.|++.++ ++||++.+| ++++|+|||||||||||++| |++.+. .+...|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKG-EVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 357899999987665 999999999 99999999999999999999 665421 112346
Q ss_pred ecCCCC--CCchHHH------------------HHHHHcC-CchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCC
Q 004463 301 LPAKNH--PRLPWFD------------------LILADIG-DHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 358 (752)
Q Consensus 301 vP~~~~--~~l~~~d------------------~i~~~ig-~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~ 358 (752)
+|++.. ..+++.+ .++..++ ..+..++.+++||+||+ |++++++++.+|+++||||||
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt 159 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 676642 1122222 2233343 34567889999999999 899999999999999999999
Q ss_pred CCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 359 SGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 359 ~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+|||+.....+...+.+ +.+ .+.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 160 ~~LD~~~~~~l~~~l~~-~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~ 213 (230)
T TIGR03410 160 EGIQPSIIKDIGRVIRR-LRAEGGMAILLVEQYLDFARELADRYYVMERGRVVAS 213 (230)
T ss_pred ccCCHHHHHHHHHHHHH-HHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999985554 554 4789999999988 4558999999999987644
No 119
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=3.5e-25 Score=231.15 Aligned_cols=165 Identities=21% Similarity=0.207 Sum_probs=130.6
Q ss_pred EEcccccccCC-eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhhceee
Q 004463 245 TVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLYL 301 (752)
Q Consensus 245 ~~~~ls~~y~~-~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~G~~v 301 (752)
+++||++.|++ ..+ ++||++.+| ++++|+||||+|||||||+| |+..+- .....|+
T Consensus 2 ~~~~l~~~~~~~~~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 2 EFENVTKRYGGGKKAVNNLNLEIAKG-EFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred EEEEEEEEeCCcceEeeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 57899999987 555 999999999 99999999999999999999 665321 0112466
Q ss_pred cCCCCC--CchHH---------------------HHHHHHcCCch--hhhcCcccchHHHH-HHHHHHHccCCCcEEEEe
Q 004463 302 PAKNHP--RLPWF---------------------DLILADIGDHQ--SLEQNLSTFSGHIS-RIVDILELVSRESLVLID 355 (752)
Q Consensus 302 P~~~~~--~l~~~---------------------d~i~~~ig~~~--~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLD 355 (752)
|+.... .+++. ..++..+|+.. ..++.+++||+||+ |++++++++.+|+++|||
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 160 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMD 160 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 665311 12222 23355667764 67888999999999 899999999999999999
Q ss_pred CCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 356 EIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 356 Ep~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
|||+|+|+.....+...+ ..+.+ .|.++|++||+.+ +..+|++++.+.+|++...
T Consensus 161 EPt~~LD~~~~~~l~~~L-~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 217 (242)
T cd03295 161 EPFGALDPITRDQLQEEF-KRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQV 217 (242)
T ss_pred CCcccCCHHHHHHHHHHH-HHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999998844 45554 4889999999987 5679999999999988643
No 120
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.92 E-value=3.1e-25 Score=245.22 Aligned_cols=169 Identities=17% Similarity=0.203 Sum_probs=137.3
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------hhhceee
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYL 301 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------aq~G~~v 301 (752)
.||+++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |+..+- .+...|+
T Consensus 13 ~~L~l~~l~~~~~~~~~l~~vsl~i~~G-e~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 91 (375)
T PRK09452 13 PLVELRGISKSFDGKEVISNLDLTINNG-EFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTV 91 (375)
T ss_pred ceEEEEEEEEEECCeEEEeeeEEEEeCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 47899999999988665 899999999 99999999999999999999 665431 1112356
Q ss_pred cCCCC--CCchHHH---------------------HHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCC
Q 004463 302 PAKNH--PRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 357 (752)
Q Consensus 302 P~~~~--~~l~~~d---------------------~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp 357 (752)
|++.. ..+++++ .++..+|+.+..++.+.+|||||+ |++++++++.+|++||||||
T Consensus 92 fQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP 171 (375)
T PRK09452 92 FQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDES 171 (375)
T ss_pred ecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 65531 2223332 345566788888999999999999 89999999999999999999
Q ss_pred CCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 358 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 358 ~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+++||+..+..+...+.+...+.+.|+|++|||.+ ...+||++..+.+|++...
T Consensus 172 ~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~ 226 (375)
T PRK09452 172 LSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQD 226 (375)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999998555544556899999999987 5679999999999998643
No 121
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.9e-25 Score=236.20 Aligned_cols=169 Identities=18% Similarity=0.163 Sum_probs=135.5
Q ss_pred CCeEEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh--------------------
Q 004463 241 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------------------- 295 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a-------------------- 295 (752)
+.|++++|+++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |+..+..
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~G-e~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~ 81 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRG-SWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCC-CEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHH
Confidence 468999999999964 234 999999999 99999999999999999999 6653311
Q ss_pred --hhceeecCCCC---CCchH---------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCC
Q 004463 296 --KAGLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 348 (752)
Q Consensus 296 --q~G~~vP~~~~---~~l~~---------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~ 348 (752)
+...|+|+... ...++ ++.++..+|+.+..++.+++||+||+ |++++++++.+
T Consensus 82 ~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~ 161 (282)
T PRK13640 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVE 161 (282)
T ss_pred HHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 11235665531 11122 22345667888888999999999999 89999999999
Q ss_pred CcEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 349 ESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 349 ~~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
|++|||||||+|||+.....+...+. .+.+ .|.|||++||+++...+|++++.+.+|.+..+
T Consensus 162 P~llllDEPt~gLD~~~~~~l~~~l~-~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~ 224 (282)
T PRK13640 162 PKIIILDESTSMLDPAGKEQILKLIR-KLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQ 224 (282)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHH-HHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999998554 4554 48899999999986678999999999988765
No 122
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=4.9e-25 Score=229.91 Aligned_cols=167 Identities=16% Similarity=0.182 Sum_probs=133.8
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------------
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------- 294 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------------- 294 (752)
|+.++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+-
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQG-ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 5789999999987666 999999999 99999999999999999999 664320
Q ss_pred hhhceeecCCCC--CCchHHHH----------------------HHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCC
Q 004463 295 SKAGLYLPAKNH--PRLPWFDL----------------------ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 349 (752)
Q Consensus 295 aq~G~~vP~~~~--~~l~~~d~----------------------i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~ 349 (752)
.+.-.|+|+... ..+++.++ ++..+|+...+++.+..|||||+ |++++++++.+|
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 160 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEP 160 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 011245666531 11222222 34456777778889999999999 899999999999
Q ss_pred cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 350 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 350 ~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
+++||||||+|||+.....+.. ++..+.+.+.|+|++||+.+. ..+|++++.+.+|.+...
T Consensus 161 ~llilDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~ 222 (242)
T PRK11124 161 QVLLFDEPTAALDPEITAQIVS-IIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred CEEEEcCCCCcCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999988 555566668999999999884 568999999999988654
No 123
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.92 E-value=3.2e-25 Score=244.18 Aligned_cols=168 Identities=18% Similarity=0.218 Sum_probs=135.2
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh-------------------hhce
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------------------KAGL 299 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a-------------------q~G~ 299 (752)
+.++++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |+..+-+ +.-.
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig 82 (362)
T TIGR03258 4 GGIRIDHLRVAYGANTVLDDLSLEIEAG-ELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLA 82 (362)
T ss_pred eEEEEEEEEEEECCeEEEeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEE
Confidence 45789999999988665 999999999 99999999999999999999 6554322 1112
Q ss_pred eecCCCC--CCchH---------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEe
Q 004463 300 YLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 355 (752)
Q Consensus 300 ~vP~~~~--~~l~~---------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLD 355 (752)
+++++.. ..+++ ++.++..+|+.+..++.+.+|||||+ |++++++++.+|++||||
T Consensus 83 ~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLD 162 (362)
T TIGR03258 83 LLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLD 162 (362)
T ss_pred EEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 4444431 12222 23346667888889999999999999 899999999999999999
Q ss_pred CCCCCCChHhHHHHHHHHHHHHhcC--CcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 356 EIGSGTDPSEGVALATSILQYLRDR--VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 356 Ep~~glD~~~~~~L~~all~~l~~~--~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
||++|||+..+..+...+. .+.+. |.|+|++|||.+ ...+||++..+.+|++...
T Consensus 163 EP~s~LD~~~r~~l~~~l~-~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~ 220 (362)
T TIGR03258 163 EPLSALDANIRANMREEIA-ALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAH 220 (362)
T ss_pred CccccCCHHHHHHHHHHHH-HHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999998554 45554 789999999987 4679999999999988654
No 124
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=4e-25 Score=224.91 Aligned_cols=154 Identities=21% Similarity=0.237 Sum_probs=120.5
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh------------------hhceee
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------------------KAGLYL 301 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a------------------q~G~~v 301 (752)
|++++|+++.|++..+ ++||++.+| ++++|+|||||||||||++| |+..+.+ +.-.++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~ 79 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAG-ELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYL 79 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEe
Confidence 5789999999988665 999999999 99999999999999999999 6543210 111234
Q ss_pred cCCCC--CCchH------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCC
Q 004463 302 PAKNH--PRLPW------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 360 (752)
Q Consensus 302 P~~~~--~~l~~------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~g 360 (752)
|+... ..+++ ++.++..+|+.+..++.+++||+||+ |++++++++.+|+++||||||+|
T Consensus 80 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 159 (204)
T PRK13538 80 GHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTA 159 (204)
T ss_pred CCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 43321 11122 23345667777778899999999999 89999999999999999999999
Q ss_pred CChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhc
Q 004463 361 TDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKD 398 (752)
Q Consensus 361 lD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~ 398 (752)
||+.....+.. ++..+.+.+.|+|++||+.+....|+
T Consensus 160 LD~~~~~~l~~-~l~~~~~~~~tiii~sh~~~~i~~~~ 196 (204)
T PRK13538 160 IDKQGVARLEA-LLAQHAEQGGMVILTTHQDLPVASDK 196 (204)
T ss_pred CCHHHHHHHHH-HHHHHHHCCCEEEEEecChhhhccCC
Confidence 99999999988 44455566889999999988554344
No 125
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.92 E-value=4.2e-25 Score=228.14 Aligned_cols=165 Identities=18% Similarity=0.208 Sum_probs=129.9
Q ss_pred EEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhh-----hhh---------------------
Q 004463 244 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA-----SLM--------------------- 294 (752)
Q Consensus 244 l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli-----~~~--------------------- 294 (752)
++++||++.|++.++ ++||++.+| ++++|+||||||||||||+| |+. .+.
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKG-EITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 357899999987665 999999999 99999999999999999999 877 421
Q ss_pred hhhceeecCCCCC-CchHHH----------------------HHHHHcCCchhhhcC--cccchHHHH-HHHHHHHccCC
Q 004463 295 SKAGLYLPAKNHP-RLPWFD----------------------LILADIGDHQSLEQN--LSTFSGHIS-RIVDILELVSR 348 (752)
Q Consensus 295 aq~G~~vP~~~~~-~l~~~d----------------------~i~~~ig~~~~i~~~--~stlSgg~k-rl~~i~~la~~ 348 (752)
.+...|+|+.... .+++.+ .++..+|+.+..++. +.+|||||+ |++++++++.+
T Consensus 80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~ 159 (227)
T cd03260 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANE 159 (227)
T ss_pred HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcC
Confidence 0112366666311 112222 234556666666666 499999999 89999999999
Q ss_pred CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 349 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 349 ~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
|+++||||||+|||+.....+.. ++..+.+. .|+|++||+.+ +..+|++++.+.+|++...
T Consensus 160 p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 221 (227)
T cd03260 160 PEVLLLDEPTSALDPISTAKIEE-LIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEF 221 (227)
T ss_pred CCEEEEeCCCccCCHHHHHHHHH-HHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 99999999999999999999998 44455555 89999999988 5668999999999987654
No 126
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.4e-25 Score=233.68 Aligned_cols=169 Identities=17% Similarity=0.182 Sum_probs=136.0
Q ss_pred CCeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhhc
Q 004463 241 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 298 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~G 298 (752)
+.+|.++||+++|++..+ ++||++.+| ++++|+|||||||||||++| |+..+- ....
T Consensus 5 ~~~l~i~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 5 VARLRGEQLTLGYGKYTVAENLTVEIPDG-HFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred ccEEEEEEEEEEECCEEEeeecceEECCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 358899999999988666 999999999 99999999999999999999 665321 1112
Q ss_pred eeecCCCCC--CchH-------------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCc
Q 004463 299 LYLPAKNHP--RLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES 350 (752)
Q Consensus 299 ~~vP~~~~~--~l~~-------------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~ 350 (752)
.|+|+.... ..++ ++.++..+|+.+..++.+++||+||+ |+.++++++.+|+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 163 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETA 163 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCC
Confidence 366665311 1111 22345556777778899999999999 8999999999999
Q ss_pred EEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 351 LVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 351 LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
++||||||+|||+.....+...+. .+.+ .+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 164 llllDEPt~gLD~~~~~~l~~~L~-~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 225 (265)
T PRK10253 164 IMLLDEPTTWLDISHQIDLLELLS-ELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQ 225 (265)
T ss_pred EEEEeCccccCCHHHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999554 4554 5889999999987 6679999999999987654
No 127
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.92 E-value=5e-25 Score=225.64 Aligned_cols=166 Identities=18% Similarity=0.219 Sum_probs=131.4
Q ss_pred EEcccccccCCeeEeeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------hhhceeecCCCC
Q 004463 245 TVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAKNH 306 (752)
Q Consensus 245 ~~~~ls~~y~~~~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------aq~G~~vP~~~~ 306 (752)
+++||+++|+....++||++.+| ++++|+||||+|||||||+| |++.+. .+...|+|+...
T Consensus 2 ~~~~l~~~~~~~~~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~ 80 (213)
T TIGR01277 2 ALDKVRYEYEHLPMEFDLNVADG-EIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENN 80 (213)
T ss_pred eEEeeeEEeCCcceeeEEEEeCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCc
Confidence 57899999986545999999999 99999999999999999999 665431 112346666531
Q ss_pred C--CchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCC
Q 004463 307 P--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 362 (752)
Q Consensus 307 ~--~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD 362 (752)
. .+++. +.++..+|+.+..++.+.+||+||+ |++++++++.+|+++||||||+|+|
T Consensus 81 ~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD 160 (213)
T TIGR01277 81 LFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALD 160 (213)
T ss_pred cCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 1 11222 2345566777778899999999999 8999999999999999999999999
Q ss_pred hHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 363 PSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 363 ~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~ 210 (213)
T TIGR01277 161 PLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVV 210 (213)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEe
Confidence 999999999555443445889999999988 4668999999999887544
No 128
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=4.5e-25 Score=226.29 Aligned_cols=163 Identities=23% Similarity=0.238 Sum_probs=128.5
Q ss_pred CCCeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh----------------hhhcee
Q 004463 240 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------SKAGLY 300 (752)
Q Consensus 240 g~~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~----------------aq~G~~ 300 (752)
++.|+.++|++++|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|
T Consensus 8 ~~~~l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 8 APPLLAAHALAFSRNEEPVFGPLDFHVDAG-EALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred CcceEEEeeEEEecCCceeeecceEEECCC-CEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE
Confidence 4468999999999987665 999999999 99999999999999999999 665321 111235
Q ss_pred ecCCCC--CCchHHH------------------HHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCC
Q 004463 301 LPAKNH--PRLPWFD------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 359 (752)
Q Consensus 301 vP~~~~--~~l~~~d------------------~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~ 359 (752)
+|+... ..+++.+ .++..+++....++.+.+||+||+ |++++++++.+|+++||||||+
T Consensus 87 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 166 (214)
T PRK13543 87 LGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYA 166 (214)
T ss_pred eecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 555431 1122222 334556777677889999999999 8999999999999999999999
Q ss_pred CCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhccccccc
Q 004463 360 GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE 404 (752)
Q Consensus 360 glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~ 404 (752)
|||+.....+.. ++..+.+.+.|+|++||+.+ +..+|++.+.+.
T Consensus 167 ~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~ 211 (214)
T PRK13543 167 NLDLEGITLVNR-MISAHLRGGGAALVTTHGAYAAPPVRTRMLTLE 211 (214)
T ss_pred cCCHHHHHHHHH-HHHHHHhCCCEEEEEecChhhhhhhcceEEEEe
Confidence 999999999888 55555666899999999988 567888876654
No 129
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.4e-25 Score=242.79 Aligned_cols=167 Identities=19% Similarity=0.258 Sum_probs=134.7
Q ss_pred eEEEcccccccCCeeEeeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------------hhhc
Q 004463 243 EMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAG 298 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------------aq~G 298 (752)
||++ ||+++|++..+++||++.+| ++++|+||||||||||||+| |++.+- .+..
T Consensus 1 ~l~~-~l~k~~~~~~~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i 78 (352)
T PRK11144 1 MLEL-NFKQQLGDLCLTVNLTLPAQ-GITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRI 78 (352)
T ss_pred CeEE-EEEEEeCCEEEEEEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCE
Confidence 5677 99999998777999999999 99999999999999999999 665321 0112
Q ss_pred eeecCCCC--CCchH---------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCC
Q 004463 299 LYLPAKNH--PRLPW---------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 360 (752)
Q Consensus 299 ~~vP~~~~--~~l~~---------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~g 360 (752)
.|+|+... ..+++ ++.++..+|+.+..++.+.+|||||+ |++++++++.+|++|||||||+|
T Consensus 79 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~ 158 (352)
T PRK11144 79 GYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred EEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence 35565531 12222 23456677888888999999999999 89999999999999999999999
Q ss_pred CChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 361 TDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 361 lD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
||+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 159 LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~ 210 (352)
T PRK11144 159 LDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAF 210 (352)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEe
Confidence 99999999998555443444889999999987 6679999999999987644
No 130
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.92 E-value=5.8e-25 Score=227.19 Aligned_cols=162 Identities=23% Similarity=0.219 Sum_probs=128.1
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhhce
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 299 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~G~ 299 (752)
.|++++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |+..+. .+...
T Consensus 6 ~~i~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 6 PLLQLQNVGYLAGDAKILNNISFSLRAG-EFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred ceEEEeccEEeeCCceeeeccEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 47889999999987666 999999999 99999999999999999999 665321 11223
Q ss_pred eecCCCCC-CchH-------------------HHHHHHHcCCc-hhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCC
Q 004463 300 YLPAKNHP-RLPW-------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI 357 (752)
Q Consensus 300 ~vP~~~~~-~l~~-------------------~d~i~~~ig~~-~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp 357 (752)
|+|+.... ..++ +..++..+++. ...++.+.+||+|++ |++++++++.+|+++|||||
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 164 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEI 164 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 56655310 0112 22345667774 467889999999999 89999999999999999999
Q ss_pred CCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccccc
Q 004463 358 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 404 (752)
Q Consensus 358 ~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~ 404 (752)
|+|||+.....+...+.+...+.+.|+|++||+.+....|++++.+.
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~ 211 (225)
T PRK10247 165 TSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQ 211 (225)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEe
Confidence 99999999999998555544455889999999988656788888774
No 131
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.2e-25 Score=234.67 Aligned_cols=167 Identities=17% Similarity=0.139 Sum_probs=133.3
Q ss_pred eEEEcccccccC-CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhhce
Q 004463 243 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 299 (752)
Q Consensus 243 ~l~~~~ls~~y~-~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~G~ 299 (752)
|++++||+++|+ ...+ ++||++.+| ++++|+||||||||||||+| |+..+. .+...
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRN-SRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 688999999995 4434 999999999 99999999999999999999 665321 11123
Q ss_pred eecCCCC---CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEE
Q 004463 300 YLPAKNH---PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 354 (752)
Q Consensus 300 ~vP~~~~---~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLL 354 (752)
|+|+... ...++. +.++..+|+.+.+++.+..||+||+ |+.++++++.+|++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llil 161 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVL 161 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 5666531 111222 2345566777788999999999999 89999999999999999
Q ss_pred eCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 355 DEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 355 DEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
||||+|||+.....+.. ++..+.+ .+.|+|++||+++. ..+|++++.+.+|++..+
T Consensus 162 DEPt~gLD~~~~~~l~~-~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~ 219 (277)
T PRK13652 162 DEPTAGLDPQGVKELID-FLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAY 219 (277)
T ss_pred eCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEE
Confidence 99999999999999988 4444554 48899999999885 579999999999998754
No 132
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.92 E-value=5.2e-25 Score=241.97 Aligned_cols=168 Identities=16% Similarity=0.205 Sum_probs=135.3
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------hhhceeec
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 302 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------aq~G~~vP 302 (752)
+|+++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|+|
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~G-e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~ 80 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSG-QMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVF 80 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEe
Confidence 5789999999988665 999999999 99999999999999999999 665431 11223666
Q ss_pred CCCC--CCchH-------------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEE
Q 004463 303 AKNH--PRLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 354 (752)
Q Consensus 303 ~~~~--~~l~~-------------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLL 354 (752)
++.. ..+++ ++.++..+++.+..++.+.+|||||+ |++++++++.+|++|||
T Consensus 81 Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLL 160 (353)
T PRK10851 81 QHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLL 160 (353)
T ss_pred cCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 6531 11122 22345667787888999999999999 89999999999999999
Q ss_pred eCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 355 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 355 DEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
||||+|||+..+..+...+.+...+.+.|+|++|||++ ...+||++..+.+|++...
T Consensus 161 DEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~ 218 (353)
T PRK10851 161 DEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQA 218 (353)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999998555543444889999999987 5679999999999988654
No 133
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.92 E-value=6.7e-25 Score=231.13 Aligned_cols=168 Identities=18% Similarity=0.189 Sum_probs=133.8
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------------------------
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------ 294 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------------ 294 (752)
++++++||++.|++..+ ++||++.+| ++++|+||||+||||||++| |++.+.
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 4 NKLNVIDLHKRYGEHEVLKGVSLQANAG-DVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred ccEEEeeeEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 57899999999987665 999999999 99999999999999999999 665321
Q ss_pred --------hhhceeecCCCCC--CchHHHH----------------------HHHHcCCchhh-hcCcccchHHHH-HHH
Q 004463 295 --------SKAGLYLPAKNHP--RLPWFDL----------------------ILADIGDHQSL-EQNLSTFSGHIS-RIV 340 (752)
Q Consensus 295 --------aq~G~~vP~~~~~--~l~~~d~----------------------i~~~ig~~~~i-~~~~stlSgg~k-rl~ 340 (752)
.+.-.|+|+.... .++++++ ++..+|+.... ++.+++||+||+ |++
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~ 162 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVS 162 (257)
T ss_pred cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence 0112456665421 1223222 34455666554 788999999999 899
Q ss_pred HHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 341 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 341 ~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
++++++.+|+++||||||+|||+.....+.. ++..+.+.|.++|++||+.+ +..+|++++.+.+|++...
T Consensus 163 laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 163 IARALAMEPEVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999998 55556667899999999988 4558999999999988654
No 134
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.92 E-value=4.6e-25 Score=224.25 Aligned_cols=154 Identities=19% Similarity=0.234 Sum_probs=120.9
Q ss_pred EcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------------hhhce
Q 004463 246 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGL 299 (752)
Q Consensus 246 ~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------------aq~G~ 299 (752)
++||++.|++..+ ++||++.+| ++++|+|||||||||||+++ |++.+- .+...
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKG-KMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 3688999987666 999999999 99999999999999999999 665321 01123
Q ss_pred eecCCCC--CCchH---------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEe
Q 004463 300 YLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 355 (752)
Q Consensus 300 ~vP~~~~--~~l~~---------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLD 355 (752)
|+|+... ...++ +..++..+|+.+..++.+.+||+||+ |++++++++.+|+++|||
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllD 159 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILAD 159 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 4555431 11122 12345667777788899999999999 899999999999999999
Q ss_pred CCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccc
Q 004463 356 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDT 401 (752)
Q Consensus 356 Ep~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~ 401 (752)
|||+|||+.....+... +..+.+.+.++|++||+.++..+|++++
T Consensus 160 EPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~sh~~~~~~~~d~i~ 204 (206)
T TIGR03608 160 EPTGSLDPKNRDEVLDL-LLELNDEGKTIIIVTHDPEVAKQADRVI 204 (206)
T ss_pred CCcCCCCHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHhhcCEEE
Confidence 99999999999999984 4555556889999999998767777654
No 135
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.5e-25 Score=236.00 Aligned_cols=166 Identities=16% Similarity=0.140 Sum_probs=132.3
Q ss_pred EEEcccccccCC-----eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh---------------------
Q 004463 244 MTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 294 (752)
Q Consensus 244 l~~~~ls~~y~~-----~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------------- 294 (752)
++++||++.|++ .++ ++||+|.+| ++++|+||||||||||||+| |++.+.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSG-SYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 789999999974 234 999999999 99999999999999999999 665321
Q ss_pred --hhhceeecCCCC---CCchHH---------------------HHHHHHcCCc-hhhhcCcccchHHHH-HHHHHHHcc
Q 004463 295 --SKAGLYLPAKNH---PRLPWF---------------------DLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV 346 (752)
Q Consensus 295 --aq~G~~vP~~~~---~~l~~~---------------------d~i~~~ig~~-~~i~~~~stlSgg~k-rl~~i~~la 346 (752)
.+...|+|+... ...++. +.++..+|+. ...++.+.+||+||+ |++++++++
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~ 161 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA 161 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 012246776531 111222 2345567775 456889999999999 899999999
Q ss_pred CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 347 SRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 347 ~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
.+|++|||||||+|||+.....+... +..+.+ .|.|||++||+++ +..+|++++.+.+|.+..+
T Consensus 162 ~~P~llllDEPt~~LD~~~~~~l~~~-L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~ 227 (290)
T PRK13634 162 MEPEVLVLDEPTAGLDPKGRKEMMEM-FYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQ 227 (290)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999984 455554 5889999999988 4579999999999998765
No 136
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=8.3e-25 Score=242.14 Aligned_cols=170 Identities=14% Similarity=0.157 Sum_probs=138.7
Q ss_pred CCeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------hhhcee
Q 004463 241 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLY 300 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------aq~G~~ 300 (752)
..||+++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+...|
T Consensus 17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~G-e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 95 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKG-EIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM 95 (377)
T ss_pred CceEEEEeEEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 347899999999988655 899999999 99999999999999999999 665431 111235
Q ss_pred ecCCC--CCCchHHH---------------------HHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeC
Q 004463 301 LPAKN--HPRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 356 (752)
Q Consensus 301 vP~~~--~~~l~~~d---------------------~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDE 356 (752)
+|++. +..+++.+ .++..+++.+..++.+.+|||||+ |++++++++.+|++|||||
T Consensus 96 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDE 175 (377)
T PRK11607 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDE 175 (377)
T ss_pred EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 66654 12233333 345566777888999999999999 8999999999999999999
Q ss_pred CCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 357 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 357 p~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
|+++||+..+..+...+.+.+.+.+.|+|++|||.+ ...+||+++.+.+|++...
T Consensus 176 P~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~ 231 (377)
T PRK11607 176 PMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQI 231 (377)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEE
Confidence 999999999999988676666667899999999988 4679999999999988644
No 137
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.92 E-value=1.1e-24 Score=230.25 Aligned_cols=169 Identities=20% Similarity=0.265 Sum_probs=135.2
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh-----------------------
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS----------------------- 295 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a----------------------- 295 (752)
.||+++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |+..+-.
T Consensus 3 ~~l~~~nl~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQALHAVDLNIHHG-EMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred cEEEEeeEEEEeCCeEEEecceEEEcCC-cEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 37889999999987665 999999999 99999999999999999999 7764310
Q ss_pred ----hhceeecCCCC--CCchHH-----------------------------HHHHHHcCCchhhhcCcccchHHHH-HH
Q 004463 296 ----KAGLYLPAKNH--PRLPWF-----------------------------DLILADIGDHQSLEQNLSTFSGHIS-RI 339 (752)
Q Consensus 296 ----q~G~~vP~~~~--~~l~~~-----------------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl 339 (752)
+...|+|+... ..+++. ..++..+|+.+.+++.+.+||+||+ |+
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 161 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRV 161 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHH
Confidence 11246666531 111222 2244556777778899999999999 89
Q ss_pred HHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 340 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 340 ~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+++++++.+|+||||||||+|||+.....+...+.+...+.|.|+|++||+.+ +..+|++++.+.+|.+..+
T Consensus 162 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~ 234 (262)
T PRK09984 162 AIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYD 234 (262)
T ss_pred HHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999998555433345889999999998 5779999999999987544
No 138
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=4.8e-25 Score=233.93 Aligned_cols=165 Identities=17% Similarity=0.117 Sum_probs=131.6
Q ss_pred EcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------------hhhce
Q 004463 246 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGL 299 (752)
Q Consensus 246 ~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------------aq~G~ 299 (752)
++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+- .+...
T Consensus 27 ~~~~~~~~~~~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~ 105 (269)
T cd03294 27 KEEILKKTGQTVGVNDVSLDVREG-EIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKIS 105 (269)
T ss_pred hhhhhhhcCCceEeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEE
Confidence 5689999998776 999999999 99999999999999999999 665321 01124
Q ss_pred eecCCCCC--CchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEe
Q 004463 300 YLPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID 355 (752)
Q Consensus 300 ~vP~~~~~--~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLD 355 (752)
|+|+.... .+++. +.++..+|+.+.+++.+.+||+||+ |++++++++.+|++||||
T Consensus 106 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLD 185 (269)
T cd03294 106 MVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMD 185 (269)
T ss_pred EEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 66665311 12221 2345567787788999999999999 899999999999999999
Q ss_pred CCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 356 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 356 Ep~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
|||+|||+.....+...+.+...+.|.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 186 EPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~ 242 (269)
T cd03294 186 EAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQV 242 (269)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999998555433445889999999987 5679999999999987543
No 139
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=6.7e-25 Score=224.72 Aligned_cols=161 Identities=21% Similarity=0.251 Sum_probs=127.6
Q ss_pred ccccccCCeeEeeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------------hhhceeecC
Q 004463 248 SLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGLYLPA 303 (752)
Q Consensus 248 ~ls~~y~~~~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------------aq~G~~vP~ 303 (752)
+|+|+|++..+++||++.+ ++++|+||||+||||||+++ |++.+- .+...|+|+
T Consensus 5 ~l~~~~~~~~~~vsl~i~~--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q 82 (214)
T cd03297 5 DIEKRLPDFTLKIDFDLNE--EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQ 82 (214)
T ss_pred eeeEecCCeeeCceEEEcc--eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEec
Confidence 8999999987899999987 79999999999999999999 665421 011235666
Q ss_pred CCCC--CchH-------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCC
Q 004463 304 KNHP--RLPW-------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 361 (752)
Q Consensus 304 ~~~~--~l~~-------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~gl 361 (752)
.... .+++ +..++..+|+....++.+++||+||+ |+.++++++.+|+++||||||+||
T Consensus 83 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 83 QYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred CCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 5321 1222 22345667777778899999999999 899999999999999999999999
Q ss_pred ChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 004463 362 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 410 (752)
Q Consensus 362 D~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~ 410 (752)
|+.....+...+.+...+.|.|+|++||+.+ +..+|++++.+.+|++..
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 9999999998554433334889999999987 557899999999988653
No 140
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.92 E-value=6.6e-25 Score=229.75 Aligned_cols=166 Identities=19% Similarity=0.259 Sum_probs=131.0
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------h------------------
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------S------------------ 295 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------a------------------ 295 (752)
|++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |+..+. +
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKN-QVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCC-CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 5789999999987665 999999999 99999999999999999999 776421 0
Q ss_pred --hhceeecCCCCC-CchHHHH----------------------HHHHcCCc----hhhhcCcccchHHHH-HHHHHHHc
Q 004463 296 --KAGLYLPAKNHP-RLPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 345 (752)
Q Consensus 296 --q~G~~vP~~~~~-~l~~~d~----------------------i~~~ig~~----~~i~~~~stlSgg~k-rl~~i~~l 345 (752)
+...|+|+.... ..+++++ ++..+|+. +.+++.+..|||||+ |+++++++
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 159 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL 159 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 112355554310 1222222 34445665 567888999999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 346 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 346 a~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+.+|+++||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 224 (247)
T TIGR00972 160 AVEPEVLLLDEPTSALDPIATGKIEE-LIQELKK-KYTIVIVTHNMQQAARISDRTAFFYDGELVEY 224 (247)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHh-cCeEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999988 4445555 489999999988 5679999999999987644
No 141
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=6.4e-25 Score=233.71 Aligned_cols=167 Identities=19% Similarity=0.183 Sum_probs=133.3
Q ss_pred eEEEcccccccCC-eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh---------------------hhh
Q 004463 243 EMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKA 297 (752)
Q Consensus 243 ~l~~~~ls~~y~~-~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~---------------------aq~ 297 (752)
|+.++||++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+. .+.
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKG-EMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 5789999999963 434 999999999 99999999999999999999 665321 112
Q ss_pred ceeecCCCC---CCchHHH---------------------HHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEE
Q 004463 298 GLYLPAKNH---PRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 352 (752)
Q Consensus 298 G~~vP~~~~---~~l~~~d---------------------~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~Ll 352 (752)
..|+|++.. ...++.+ .++..+|+.+..++.+.+||+||+ |+.++++++.+|+++
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll 159 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEII 159 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 346676631 1112222 345556777778889999999999 899999999999999
Q ss_pred EEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 353 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 353 LLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
||||||+|||+.....+...+ ..+.+.+.|+|++||+.+. ..+|++++.+.+|.+..+
T Consensus 160 llDEPt~gLD~~~~~~l~~~l-~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~ 218 (275)
T PRK13639 160 VLDEPTSGLDPMGASQIMKLL-YDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKE 218 (275)
T ss_pred EEeCCCcCCCHHHHHHHHHHH-HHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999955 4556568999999999884 568999999999988754
No 142
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=7e-25 Score=234.38 Aligned_cols=168 Identities=17% Similarity=0.154 Sum_probs=135.1
Q ss_pred CeEEEcccccccC-CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh---------------------hh
Q 004463 242 SEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SK 296 (752)
Q Consensus 242 ~~l~~~~ls~~y~-~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~---------------------aq 296 (752)
.|++++||++.|+ +..+ ++||++.+| ++++|+||||+|||||||+| |++.+. ..
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKG-EVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4789999999996 4545 999999999 99999999999999999999 665321 11
Q ss_pred hceeecCCCC---CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcE
Q 004463 297 AGLYLPAKNH---PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 351 (752)
Q Consensus 297 ~G~~vP~~~~---~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~L 351 (752)
...|+|+... ...++. +.++..+|+....++.+..||+||+ |+.++++++.+|++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~l 162 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV 162 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 2346777641 111222 2345667777788899999999999 89999999999999
Q ss_pred EEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 352 VLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 352 lLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
|||||||+|||+.....+...+ ..+.+ .|.|||++||+++. ..+|+++..+.+|++..+
T Consensus 163 LilDEPt~gLD~~~~~~l~~~l-~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~ 223 (283)
T PRK13636 163 LVLDEPTAGLDPMGVSEIMKLL-VEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQ 223 (283)
T ss_pred EEEeCCccCCCHHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999844 44554 48899999999885 469999999999998755
No 143
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.92 E-value=6.1e-25 Score=232.88 Aligned_cols=169 Identities=17% Similarity=0.149 Sum_probs=131.0
Q ss_pred CeEEEcccccccCC---------eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh---------------
Q 004463 242 SEMTVGSLSKGISD---------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------- 294 (752)
Q Consensus 242 ~~l~~~~ls~~y~~---------~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------- 294 (752)
.||+++||+++|++ .++ ++||++.+| ++++|+|||||||||||++| |++.+.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREG-QTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD 81 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCC-CEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCc
Confidence 47899999999962 234 999999999 99999999999999999999 665431
Q ss_pred ----hhhceeecCCCC----CCchH----------------------HHHHHHHcCCc-hhhhcCcccchHHHH-HHHHH
Q 004463 295 ----SKAGLYLPAKNH----PRLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDI 342 (752)
Q Consensus 295 ----aq~G~~vP~~~~----~~l~~----------------------~d~i~~~ig~~-~~i~~~~stlSgg~k-rl~~i 342 (752)
.+...|+|+... ..+++ ++.++..+|+. ...++.+++||+||+ |++++
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence 112345666531 11111 12345666773 556778899999999 89999
Q ss_pred HHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 343 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 343 ~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
++++.+|++|||||||+|||+.....+...+.+...+.|.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 162 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~ 231 (267)
T PRK15112 162 RALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVER 231 (267)
T ss_pred HHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEec
Confidence 99999999999999999999999999998555433334889999999988 4558999999999987643
No 144
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.92 E-value=7.1e-25 Score=230.79 Aligned_cols=166 Identities=17% Similarity=0.184 Sum_probs=133.4
Q ss_pred EEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhhceee
Q 004463 244 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLYL 301 (752)
Q Consensus 244 l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~G~~v 301 (752)
+.++|+++.|++..+ ++||++.+| ++++|+||||+|||||||+| |++.+- .+...|+
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPG-SLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 468899999988766 999999999 99999999999999999999 665321 1122466
Q ss_pred cCCCC--CCchHH-------------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEE
Q 004463 302 PAKNH--PRLPWF-------------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 353 (752)
Q Consensus 302 P~~~~--~~l~~~-------------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlL 353 (752)
|+... ..+++. ..++..+++.+..++.+..||+||+ |++++++++.+|+++|
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 160 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLL 160 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 66531 111222 2234556777778889999999999 8999999999999999
Q ss_pred EeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 354 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 354 LDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
|||||+|||+.....+.. ++..+.+.+.|+|++||+++. ..+|++++.+.+|.+...
T Consensus 161 lDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (256)
T TIGR03873 161 LDEPTNHLDVRAQLETLA-LVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAA 218 (256)
T ss_pred EcCccccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEe
Confidence 999999999999999998 555566668899999999884 479999999999988654
No 145
>PLN03073 ABC transporter F family; Provisional
Probab=99.92 E-value=1.8e-24 Score=256.71 Aligned_cols=162 Identities=17% Similarity=0.195 Sum_probs=128.8
Q ss_pred CeEEEcccccccCC-eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh---------hhceeecCCCCCC
Q 004463 242 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS---------KAGLYLPAKNHPR 308 (752)
Q Consensus 242 ~~l~~~~ls~~y~~-~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a---------q~G~~vP~~~~~~ 308 (752)
.+++++||++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+.. ++ .|+|+.....
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~G-e~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~i-gyv~Q~~~~~ 584 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLD-SRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRM-AVFSQHHVDG 584 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeE-EEEecccccc
Confidence 57889999999964 434 999999999 99999999999999999999 6654321 12 2555542111
Q ss_pred ch-------------------HHHHHHHHcCCch-hhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHH
Q 004463 309 LP-------------------WFDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV 367 (752)
Q Consensus 309 l~-------------------~~d~i~~~ig~~~-~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~ 367 (752)
+. .+..++..+|+.+ ..++++++|||||+ |++++++++.+|++|||||||+|||+....
T Consensus 585 l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~ 664 (718)
T PLN03073 585 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVE 664 (718)
T ss_pred CCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 10 1234566777764 57889999999999 899999999999999999999999999998
Q ss_pred HHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCcee
Q 004463 368 ALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 409 (752)
Q Consensus 368 ~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~ 409 (752)
.+...+.++ ++|+|++|||.+ +..+|++++.+.+|.+.
T Consensus 665 ~l~~~L~~~----~gtvIivSHd~~~i~~~~drv~~l~~G~i~ 703 (718)
T PLN03073 665 ALIQGLVLF----QGGVLMVSHDEHLISGSVDELWVVSEGKVT 703 (718)
T ss_pred HHHHHHHHc----CCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 887755443 459999999988 55689999999999876
No 146
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.92 E-value=7.4e-25 Score=225.11 Aligned_cols=164 Identities=18% Similarity=0.187 Sum_probs=126.3
Q ss_pred EEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhhce
Q 004463 244 MTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 299 (752)
Q Consensus 244 l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~G~ 299 (752)
++++|+++.|++ ..+ ++||++.+| ++++|+||||+||||||++| |+..+. .....
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G-~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAG-EKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 678999999975 334 999999999 99999999999999999999 665321 11224
Q ss_pred eecCCCCC-CchHHH---------------HHHHHcCCchhhhcC-----------cccchHHHH-HHHHHHHccCCCcE
Q 004463 300 YLPAKNHP-RLPWFD---------------LILADIGDHQSLEQN-----------LSTFSGHIS-RIVDILELVSRESL 351 (752)
Q Consensus 300 ~vP~~~~~-~l~~~d---------------~i~~~ig~~~~i~~~-----------~stlSgg~k-rl~~i~~la~~~~L 351 (752)
|+|+.... ..++.+ .++..+++.+.+++. +.+|||||+ |+.++++++.+|++
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 161 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI 161 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 66665411 112222 234445555555543 469999999 89999999999999
Q ss_pred EEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 004463 352 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 352 lLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~ 410 (752)
+||||||+|||+.....+...+. .+.+. .|+|++||+.++..+|++++.+.+|.+..
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~-~~~~~-~tii~~sH~~~~~~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 162 LLLDEPTSAMDMNSEERLKERLR-QLLGD-KTLIIITHRPSLLDLVDRIIVMDSGRIVA 218 (220)
T ss_pred EEEeCccccCCHHHHHHHHHHHH-HhcCC-CEEEEEeCCHHHHHhCCEEEEEeCCeEee
Confidence 99999999999999999999554 45554 89999999998768999999999987643
No 147
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.2e-24 Score=236.36 Aligned_cols=170 Identities=16% Similarity=0.157 Sum_probs=134.4
Q ss_pred CCCeEEEcccccccCCe-----eE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------
Q 004463 240 ENSEMTVGSLSKGISDF-----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------- 294 (752)
Q Consensus 240 g~~~l~~~~ls~~y~~~-----~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~----------------- 294 (752)
+..+|+++||++.|++. ++ ++||++.+| ++++|+||||||||||||+| |+..+-
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~G-e~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKN-KIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccc
Confidence 33689999999999742 23 999999999 99999999999999999999 554321
Q ss_pred ------------------hhhceeecCCCC---CCchHH---------------------HHHHHHcCCc-hhhhcCccc
Q 004463 295 ------------------SKAGLYLPAKNH---PRLPWF---------------------DLILADIGDH-QSLEQNLST 331 (752)
Q Consensus 295 ------------------aq~G~~vP~~~~---~~l~~~---------------------d~i~~~ig~~-~~i~~~~st 331 (752)
.+.-.++|+... ...++. ..++..+|+. ...++.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 176 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFG 176 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCccc
Confidence 011235566531 111222 2335556775 567889999
Q ss_pred chHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCcee
Q 004463 332 FSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 409 (752)
Q Consensus 332 lSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~ 409 (752)
|||||+ |++++++++.+|++|||||||+|||+.....+.. ++..+.++|.|+|++||+++ +..+|++++.+.+|.+.
T Consensus 177 LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~-~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~ 255 (320)
T PRK13631 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQ-LILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL 255 (320)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 999999 8999999999999999999999999999999998 55556666899999999998 56799999999999987
Q ss_pred ec
Q 004463 410 FS 411 (752)
Q Consensus 410 ~~ 411 (752)
.+
T Consensus 256 ~~ 257 (320)
T PRK13631 256 KT 257 (320)
T ss_pred Ee
Confidence 65
No 148
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=7.8e-25 Score=233.62 Aligned_cols=168 Identities=17% Similarity=0.147 Sum_probs=134.8
Q ss_pred CeEEEcccccccCC------eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------------------
Q 004463 242 SEMTVGSLSKGISD------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------ 294 (752)
Q Consensus 242 ~~l~~~~ls~~y~~------~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------ 294 (752)
.|++++||++.|++ +++ ++||++.+| ++++|+|||||||||||++| |++.+.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~ 81 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKG-EFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLW 81 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHH
Confidence 47899999999963 234 999999999 99999999999999999999 665421
Q ss_pred --hhhceeecCCCC---CCchH---------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccC
Q 004463 295 --SKAGLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS 347 (752)
Q Consensus 295 --aq~G~~vP~~~~---~~l~~---------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~ 347 (752)
.+...|+|+... ....+ ++.++..+|+.+..++.+.+||+||+ |+.++++++.
T Consensus 82 ~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~ 161 (280)
T PRK13633 82 DIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAM 161 (280)
T ss_pred HHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 112346666531 01111 23345667888888999999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 348 RESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 348 ~~~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
+|++|||||||+|||+.....+.. ++..+.+ .|.|+|++||+++....|++++.+.+|.+...
T Consensus 162 ~p~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~ 225 (280)
T PRK13633 162 RPECIIFDEPTAMLDPSGRREVVN-TIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVME 225 (280)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEe
Confidence 999999999999999999999998 5555654 58899999999986666999999999987654
No 149
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.92 E-value=4.2e-24 Score=244.00 Aligned_cols=166 Identities=21% Similarity=0.246 Sum_probs=127.3
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------h--hhceeecCCCCCC-
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S--KAGLYLPAKNHPR- 308 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------a--q~G~~vP~~~~~~- 308 (752)
.||.+.+++++|+++.+ ++++++.+| +.++|+|+||+|||||||+| |...+- . +. .|+||+....
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G-~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v-~~l~Q~~~~~~ 79 (530)
T COG0488 2 SMITLENLSLAYGDRPLLENVSLTLNPG-ERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRV-GYLSQEPPLDP 79 (530)
T ss_pred ceEEEeeeEEeeCCceeecCCcceeCCC-CEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceE-EEeCCCCCcCC
Confidence 47889999999999888 999999999 99999999999999999999 333221 0 11 2344433111
Q ss_pred -chHHH---------------------------------------------------HHHHHcCCchhhhcCcccchHHH
Q 004463 309 -LPWFD---------------------------------------------------LILADIGDHQSLEQNLSTFSGHI 336 (752)
Q Consensus 309 -l~~~d---------------------------------------------------~i~~~ig~~~~i~~~~stlSgg~ 336 (752)
.++++ .++..+|..+. ++++++||||+
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~ 158 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGW 158 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHH
Confidence 11222 12233444444 88999999999
Q ss_pred H-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeeccCc
Q 004463 337 S-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLET 414 (752)
Q Consensus 337 k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~~~~ 414 (752)
+ |++++.++..+|++|||||||||||.....-|.. +|....+|+|+||||.+ |...|++++.+.+|.+..+.++
T Consensus 159 r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~----~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gn 234 (530)
T COG0488 159 RRRVALARALLEEPDLLLLDEPTNHLDLESIEWLED----YLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGN 234 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHH----HHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCC
Confidence 9 9999999999999999999999999977665554 55554569999999998 7779999999999977666543
No 150
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=9.3e-25 Score=231.96 Aligned_cols=168 Identities=20% Similarity=0.185 Sum_probs=133.1
Q ss_pred CeEEEcccccccC--CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhh
Q 004463 242 SEMTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 297 (752)
Q Consensus 242 ~~l~~~~ls~~y~--~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~ 297 (752)
.|+.++|+++.|+ +.++ ++||++.+| ++++|+|||||||||||++| |+..+. .+.
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEG-EYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 4789999999995 3444 999999999 99999999999999999999 665321 111
Q ss_pred ceeecCCC---CCCchHHH---------------------HHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEE
Q 004463 298 GLYLPAKN---HPRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 352 (752)
Q Consensus 298 G~~vP~~~---~~~l~~~d---------------------~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~Ll 352 (752)
..|+|+.. ....++.+ .++..+|+...+++.+.+||+||+ |++++++++.+|++|
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 164 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEII 164 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 24666653 11222222 334556777778899999999999 899999999999999
Q ss_pred EEeCCCCCCChHhHHHHHHHHHHHHhcC-CcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 353 LIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 353 LLDEp~~glD~~~~~~L~~all~~l~~~-~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
||||||+|||+.....+...+. .+.+. +.|+|++||+.+...+|++++.+.+|.+...
T Consensus 165 lLDEP~~gLD~~~~~~l~~~l~-~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~ 223 (271)
T PRK13632 165 IFDESTSMLDPKGKREIKKIMV-DLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQ 223 (271)
T ss_pred EEeCCcccCCHHHHHHHHHHHH-HHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEe
Confidence 9999999999999999998554 45544 5899999999886568999999999987643
No 151
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=8.7e-25 Score=233.16 Aligned_cols=166 Identities=20% Similarity=0.168 Sum_probs=130.8
Q ss_pred EEEcccccccCC-----eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh---------------------
Q 004463 244 MTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 294 (752)
Q Consensus 244 l~~~~ls~~y~~-----~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------------- 294 (752)
++++||++.|++ .++ ++||++.+| ++++|+||||||||||||+| |++.+.
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDG-SYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 778999999974 234 999999999 99999999999999999999 665321
Q ss_pred --hhhceeecCCCC---CCchHHH---------------------HHHHHcCCc-hhhhcCcccchHHHH-HHHHHHHcc
Q 004463 295 --SKAGLYLPAKNH---PRLPWFD---------------------LILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV 346 (752)
Q Consensus 295 --aq~G~~vP~~~~---~~l~~~d---------------------~i~~~ig~~-~~i~~~~stlSgg~k-rl~~i~~la 346 (752)
.+...|+|+... ...++.+ .++..+|+. ...++.+++||+||+ |++++++++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~ 161 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA 161 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 011246676531 1112222 234456775 356888999999999 899999999
Q ss_pred CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 347 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 347 ~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
.+|++|||||||+|||+.....+...+ ..+.+.+.|||++||+.+ +..+|++++.+.+|++...
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 226 (280)
T PRK13649 162 MEPKILVLDEPTAGLDPKGRKELMTLF-KKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLS 226 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999854 455556889999999988 5568999999999987654
No 152
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.92 E-value=1.2e-24 Score=228.54 Aligned_cols=167 Identities=17% Similarity=0.190 Sum_probs=131.3
Q ss_pred EEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh--------------------------
Q 004463 244 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------------- 294 (752)
Q Consensus 244 l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------------- 294 (752)
++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+-
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAG-EKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 357899999987665 999999999 99999999999999999999 655320
Q ss_pred ------hhhceeecCCCCC--CchHH----------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHH
Q 004463 295 ------SKAGLYLPAKNHP--RLPWF----------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDIL 343 (752)
Q Consensus 295 ------aq~G~~vP~~~~~--~l~~~----------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~ 343 (752)
.+...++|+.... ..++. ..++..+|+.+.+++.+++||+||+ |+++++
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar 159 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIAR 159 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHH
Confidence 1122355555311 11222 2335556777778889999999999 899999
Q ss_pred HccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 344 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 344 ~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
+++.+|+++||||||+|||+.....+...+.+...+.+.|+|++||+++. ..+|++++.+.+|.+...
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T TIGR03005 160 ALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQ 228 (252)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 99999999999999999999999999985555444458899999999884 578999999999987543
No 153
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.92 E-value=8.7e-25 Score=227.84 Aligned_cols=166 Identities=22% Similarity=0.265 Sum_probs=127.6
Q ss_pred EEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhh--hhh-------------------hhh-c
Q 004463 244 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SLM-------------------SKA-G 298 (752)
Q Consensus 244 l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli--~~~-------------------aq~-G 298 (752)
|+++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+. .+. .+. .
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKG-EIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 357899999987665 999999999 99999999999999999999 773 210 112 2
Q ss_pred eeecCCCCC--CchH----------------------------HHHHHHHcCCch-hhhcCcc-cchHHHH-HHHHHHHc
Q 004463 299 LYLPAKNHP--RLPW----------------------------FDLILADIGDHQ-SLEQNLS-TFSGHIS-RIVDILEL 345 (752)
Q Consensus 299 ~~vP~~~~~--~l~~----------------------------~d~i~~~ig~~~-~i~~~~s-tlSgg~k-rl~~i~~l 345 (752)
.|+|+.... .+++ +..++..+|+.+ ..++.+. .||+||+ |+++++++
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al 159 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMA 159 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHH
Confidence 356665311 1111 122344456653 4566776 5999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHH-hh-hcccccccCCceeec
Q 004463 346 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CL-KDKDTRFENAATEFS 411 (752)
Q Consensus 346 a~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~-~~-a~~~~~i~~g~v~~~ 411 (752)
+.+|++|||||||+|||+.....+.. ++..+.+.+.|+|++||+.+.. .+ |++++.+.+|++...
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~ 226 (243)
T TIGR01978 160 LLEPKLAILDEIDSGLDIDALKIVAE-GINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKS 226 (243)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHH-HHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEe
Confidence 99999999999999999999999998 4455666688999999998854 46 799999999987654
No 154
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.92 E-value=7.7e-25 Score=251.18 Aligned_cols=167 Identities=17% Similarity=0.152 Sum_probs=135.6
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhhcee
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 300 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~G~~ 300 (752)
||+++||++.|++..+ ++||++.+| ++++|+||||||||||||++ |++.+- .+.-.+
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAG-DSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 7899999999987666 999999999 99999999999999999999 665321 011124
Q ss_pred ecCCCCC----------CchH-------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeC
Q 004463 301 LPAKNHP----------RLPW-------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 356 (752)
Q Consensus 301 vP~~~~~----------~l~~-------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDE 356 (752)
+|+.... .+++ ++.++..+|+.+..++.+++|||||+ |++++++++.+|++|||||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 161 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDE 161 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 4543210 1111 23456778888888999999999999 8999999999999999999
Q ss_pred CCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 357 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 357 p~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 162 Pt~~LD~~~~~~l~~-~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~ 216 (490)
T PRK10938 162 PFDGLDVASRQQLAE-LLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAET 216 (490)
T ss_pred CcccCCHHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEe
Confidence 999999999999999 55556666889999999987 5679999999999987653
No 155
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=1.1e-24 Score=222.25 Aligned_cols=159 Identities=20% Similarity=0.222 Sum_probs=122.5
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh----------------hhhceeecC
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------SKAGLYLPA 303 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~----------------aq~G~~vP~ 303 (752)
|++++||++.|++..+ ++||++.+| ++++|+|||||||||||+++ |+..+- .....|+|+
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAG-EALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGH 80 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecC
Confidence 6889999999987665 999999999 99999999999999999999 654321 011234543
Q ss_pred CCC--CCchH-----------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCCh
Q 004463 304 KNH--PRLPW-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 363 (752)
Q Consensus 304 ~~~--~~l~~-----------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~ 363 (752)
... ...++ +..++..+|+.+..++.+.+||+||+ |++++++++.+|++|||||||+|+|+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 160 (207)
T PRK13539 81 RNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDA 160 (207)
T ss_pred CCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 321 11222 23345566777777889999999999 89999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccccc
Q 004463 364 SEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 404 (752)
Q Consensus 364 ~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~ 404 (752)
.....+...+ ..+.+.+.|+|++||+.+.... ++++.+.
T Consensus 161 ~~~~~l~~~l-~~~~~~~~tiii~sH~~~~~~~-~~~~~~~ 199 (207)
T PRK13539 161 AAVALFAELI-RAHLAQGGIVIAATHIPLGLPG-ARELDLG 199 (207)
T ss_pred HHHHHHHHHH-HHHHHCCCEEEEEeCCchhhcc-CcEEeec
Confidence 9999998844 4455668999999999875443 5555443
No 156
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1e-24 Score=231.27 Aligned_cols=168 Identities=15% Similarity=0.085 Sum_probs=133.1
Q ss_pred CeEEEcccccccCCe--eE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhh
Q 004463 242 SEMTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 297 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~--~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~ 297 (752)
.|++++|+++.|++. ++ ++||++.+| ++++|+|||||||||||++| |++.+. .+.
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~G-e~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKG-QWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 478999999999752 23 999999999 99999999999999999999 665431 111
Q ss_pred ceeecCCCC---CCchH---------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEE
Q 004463 298 GLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 352 (752)
Q Consensus 298 G~~vP~~~~---~~l~~---------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~Ll 352 (752)
..|+|+... ....+ +..++..+|+.+..++.+..||+||+ |++++++++.+|+++
T Consensus 85 i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 164 (269)
T PRK13648 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVI 164 (269)
T ss_pred eeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 235665531 11111 12345667777778899999999999 899999999999999
Q ss_pred EEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 353 LIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 353 LLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
||||||+|||+.....+...+. .+.+ .+.|+|++||+.+....|++++.+.+|++..+
T Consensus 165 lLDEPt~~LD~~~~~~l~~~L~-~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~ 223 (269)
T PRK13648 165 ILDEATSMLDPDARQNLLDLVR-KVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKE 223 (269)
T ss_pred EEeCCcccCCHHHHHHHHHHHH-HHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEe
Confidence 9999999999999999998554 4554 48899999999885556999999999988654
No 157
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.92 E-value=1.2e-24 Score=230.41 Aligned_cols=168 Identities=17% Similarity=0.166 Sum_probs=131.7
Q ss_pred eEEEcccccccCC---------eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh----------------
Q 004463 243 EMTVGSLSKGISD---------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------- 294 (752)
Q Consensus 243 ~l~~~~ls~~y~~---------~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~---------------- 294 (752)
|+.++||++.|++ ..+ ++||++.+| ++++|+|||||||||||++| |++.+.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~ 80 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEG-ETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDR 80 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCH
Confidence 6889999999952 344 999999999 99999999999999999999 665321
Q ss_pred ------hhhceeecCCCC----CCchHH----------------------HHHHHHcCCc-hhhhcCcccchHHHH-HHH
Q 004463 295 ------SKAGLYLPAKNH----PRLPWF----------------------DLILADIGDH-QSLEQNLSTFSGHIS-RIV 340 (752)
Q Consensus 295 ------aq~G~~vP~~~~----~~l~~~----------------------d~i~~~ig~~-~~i~~~~stlSgg~k-rl~ 340 (752)
.+...|+|+... ..+++. ..++..+|+. ...++.+..|||||+ |++
T Consensus 81 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~ 160 (265)
T TIGR02769 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRIN 160 (265)
T ss_pred HHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHH
Confidence 112346676531 112222 2335556774 567889999999999 899
Q ss_pred HHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhcccccccCCceeec
Q 004463 341 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 411 (752)
Q Consensus 341 ~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~-~~a~~~~~i~~g~v~~~ 411 (752)
++++++.+|++|||||||+|||+.....+...+.+...+.|.|+|++||+.+.. .+|++++.+.+|.+...
T Consensus 161 laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 161 IARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 999999999999999999999999999999855554444588999999998854 58999999999987643
No 158
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.1e-24 Score=233.56 Aligned_cols=169 Identities=12% Similarity=0.091 Sum_probs=131.9
Q ss_pred CeEEEcccccccCCe-----eE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------
Q 004463 242 SEMTVGSLSKGISDF-----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------- 294 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~-----~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------- 294 (752)
++++++||++.|++. .+ ++||++.+| ++++|+||||||||||||+| |++.+.
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKN-KVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 568899999999763 24 999999999 99999999999999999999 665321
Q ss_pred -----hhhceeecCCCC---CCchHH---------------------HHHHHHcCCc-hhhhcCcccchHHHH-HHHHHH
Q 004463 295 -----SKAGLYLPAKNH---PRLPWF---------------------DLILADIGDH-QSLEQNLSTFSGHIS-RIVDIL 343 (752)
Q Consensus 295 -----aq~G~~vP~~~~---~~l~~~---------------------d~i~~~ig~~-~~i~~~~stlSgg~k-rl~~i~ 343 (752)
.+...|+|+... ...++. +.++..+++. ...++.+++||+||+ |+++++
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 011246666531 111221 1234555663 467788999999999 899999
Q ss_pred HccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 344 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 344 ~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+++.+|++|||||||+|||+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999988554443445889999999988 5679999999999987654
No 159
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.92 E-value=1.4e-24 Score=227.91 Aligned_cols=169 Identities=20% Similarity=0.188 Sum_probs=132.9
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------------------------
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------ 294 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------------ 294 (752)
.|++++||++.|++..+ ++||++.+| ++++|+|||||||||||+++ |+..+-
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPG-EVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 37889999999987555 999999999 99999999999999999999 654220
Q ss_pred ----hhhceeecCCCC----CCchH----------------------HHHHHHHcCCc-hhhhcCcccchHHHH-HHHHH
Q 004463 295 ----SKAGLYLPAKNH----PRLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDI 342 (752)
Q Consensus 295 ----aq~G~~vP~~~~----~~l~~----------------------~d~i~~~ig~~-~~i~~~~stlSgg~k-rl~~i 342 (752)
.+...++|+... ..++. ++.++..+|.. ...++.++.|||||+ |++++
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~la 160 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIA 160 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHH
Confidence 011245666531 11111 12335566775 467889999999999 89999
Q ss_pred HHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 343 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 343 ~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
++++.+|++|||||||+|||+.....+...+.+...+.+.|+|++||+.+. ..+|++++.+.+|.+...
T Consensus 161 ral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 161 RNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES 230 (253)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEE
Confidence 999999999999999999999999999985555444458899999999885 458999999999987643
No 160
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.7e-24 Score=214.81 Aligned_cols=152 Identities=25% Similarity=0.343 Sum_probs=112.1
Q ss_pred EEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchH-----H-HHHH
Q 004463 245 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW-----F-DLIL 316 (752)
Q Consensus 245 ~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~-----~-d~i~ 316 (752)
+++|+++.|++.++ ++||++.+| ++++|+||||||||||||++ +|.+.|.+|...+.. . ..+.
T Consensus 2 ~~~~l~~~~~~~~~l~~~~~~i~~G-e~~~i~G~nGsGKStLl~~l--------~G~~~~~~G~i~~~g~~~~~~~~~~~ 72 (173)
T cd03230 2 EVRNLSKRYGKKTALDDISLTVEKG-EIYGLLGPNGAGKTTLIKII--------LGLLKPDSGEIKVLGKDIKKEPEEVK 72 (173)
T ss_pred EEEEEEEEECCeeeeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHH--------hCCCCCCCeEEEECCEEcccchHhhh
Confidence 57899999987655 999999999 99999999999999999999 444444333111100 0 0000
Q ss_pred HHcCC---------chhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEE
Q 004463 317 ADIGD---------HQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVV 386 (752)
Q Consensus 317 ~~ig~---------~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tvii 386 (752)
..++. ...+...+. ||+||+ |++++++++.+|+++||||||+|||+.....+... +..+.++|.++|+
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~~~-LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~-l~~~~~~g~tiii 150 (173)
T cd03230 73 RRIGYLPEEPSLYENLTVRENLK-LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWEL-LRELKKEGKTILL 150 (173)
T ss_pred ccEEEEecCCccccCCcHHHHhh-cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH-HHHHHHCCCEEEE
Confidence 00110 001111111 999999 89999999999999999999999999999999994 4556655889999
Q ss_pred Eecchh-HHhhhcccccccCCc
Q 004463 387 TTHYAD-LSCLKDKDTRFENAA 407 (752)
Q Consensus 387 tTH~~~-l~~~a~~~~~i~~g~ 407 (752)
+||+.+ +..+|++++.+.+|.
T Consensus 151 ~th~~~~~~~~~d~i~~l~~g~ 172 (173)
T cd03230 151 SSHILEEAERLCDRVAILNNGR 172 (173)
T ss_pred ECCCHHHHHHhCCEEEEEeCCC
Confidence 999988 455899998888775
No 161
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.92 E-value=8.6e-25 Score=251.94 Aligned_cols=168 Identities=20% Similarity=0.249 Sum_probs=136.9
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhh-c
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA-G 298 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~-G 298 (752)
.|++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+. .+. -
T Consensus 10 ~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 10 PLLCARSISKQYSGVEVLKGIDFTLHAG-EVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred ceEEEEeEEEEeCCceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 37899999999988665 999999999 99999999999999999999 665421 011 2
Q ss_pred eeecCCCC--CCchHH-----------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCC
Q 004463 299 LYLPAKNH--PRLPWF-----------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 358 (752)
Q Consensus 299 ~~vP~~~~--~~l~~~-----------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~ 358 (752)
.|+|+... ..+++. ..++..+|+.+..++.+++|||||+ |++++++++.+|++|||||||
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt 168 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPT 168 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 36676531 112222 2346667887778899999999999 899999999999999999999
Q ss_pred CCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 359 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 359 ~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+|||+.....+.. ++..+.+.|.++|++||+.+ +..+|++++.+.+|.+...
T Consensus 169 ~~LD~~~~~~l~~-~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~ 221 (510)
T PRK15439 169 ASLTPAETERLFS-RIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALS 221 (510)
T ss_pred CCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999998 55556667899999999988 5679999999999987543
No 162
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.92 E-value=1.4e-24 Score=215.44 Aligned_cols=151 Identities=22% Similarity=0.279 Sum_probs=114.0
Q ss_pred EEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchH-------HH
Q 004463 245 TVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW-------FD 313 (752)
Q Consensus 245 ~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~-------~d 313 (752)
+++|+++.|++ ..+ ++||++.+| ++++|+||||+||||||++| +|...|.+|...+.. ..
T Consensus 2 ~~~~l~~~~~~~~~~~l~~~~~~i~~G-e~~~i~G~nGsGKStLl~~l--------~G~~~~~~G~i~~~g~~~~~~~~~ 72 (173)
T cd03246 2 EVENVSFRYPGAEPPVLRNVSFSIEPG-ESLAIIGPSGSGKSTLARLI--------LGLLRPTSGRVRLDGADISQWDPN 72 (173)
T ss_pred EEEEEEEEcCCCCCcceeeeEEEECCC-CEEEEECCCCCCHHHHHHHH--------HhccCCCCCeEEECCEEcccCCHH
Confidence 57899999975 333 999999999 99999999999999999999 555555554211110 00
Q ss_pred HHHHHcCC--------chhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEE
Q 004463 314 LILADIGD--------HQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLA 384 (752)
Q Consensus 314 ~i~~~ig~--------~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tv 384 (752)
.+...++. ...+...+ ||+||+ |++++++++.+|+++||||||+|||+.....+.. ++..+.+.+.|+
T Consensus 73 ~~~~~i~~~~q~~~~~~~tv~~~l--LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~-~l~~~~~~~~ti 149 (173)
T cd03246 73 ELGDHVGYLPQDDELFSGSIAENI--LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ-AIAALKAAGATR 149 (173)
T ss_pred HHHhheEEECCCCccccCcHHHHC--cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHH-HHHHHHhCCCEE
Confidence 11111110 00112222 999999 8999999999999999999999999999999998 445566668899
Q ss_pred EEEecchhHHhhhcccccccCCc
Q 004463 385 VVTTHYADLSCLKDKDTRFENAA 407 (752)
Q Consensus 385 iitTH~~~l~~~a~~~~~i~~g~ 407 (752)
|++||+.+...+|++++.+.+|.
T Consensus 150 i~~sh~~~~~~~~d~v~~l~~G~ 172 (173)
T cd03246 150 IVIAHRPETLASADRILVLEDGR 172 (173)
T ss_pred EEEeCCHHHHHhCCEEEEEECCC
Confidence 99999998667899988888775
No 163
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.5e-24 Score=215.42 Aligned_cols=165 Identities=19% Similarity=0.248 Sum_probs=130.7
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhh----h------------------------
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLA----S------------------------ 292 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli----~------------------------ 292 (752)
.++++||++.||++.+ +|++.|+++ .+++|+||+|||||||||++... .
T Consensus 7 ~~~~~~l~~yYg~~~aL~~i~l~i~~~-~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~ 85 (253)
T COG1117 7 AIEVRDLNLYYGDKHALKDINLDIPKN-KVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVE 85 (253)
T ss_pred eeEecceeEEECchhhhccCceeccCC-ceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHH
Confidence 4778999999998776 999999999 99999999999999999999221 1
Q ss_pred hhhhhceeecCCCC-CCchHHHHHHH---------------------HcC----CchhhhcCcccchHHHH-HHHHHHHc
Q 004463 293 LMSKAGLYLPAKNH-PRLPWFDLILA---------------------DIG----DHQSLEQNLSTFSGHIS-RIVDILEL 345 (752)
Q Consensus 293 ~~aq~G~~vP~~~~-~~l~~~d~i~~---------------------~ig----~~~~i~~~~stlSgg~k-rl~~i~~l 345 (752)
+..+.|+ |.|.++ ..++++|++.- ... ..|.++++...||||++ |+.+|+++
T Consensus 86 lRr~vGM-VFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARal 164 (253)
T COG1117 86 LRRRVGM-VFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARAL 164 (253)
T ss_pred HHHHhee-eccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHH
Confidence 1234553 444432 23566666521 111 13567788889999999 99999999
Q ss_pred cCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 346 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 346 a~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
|.+|++||||||||.|||.+...+.. ++..|++ .-|||+|||++. -.+++|....|.+|.++-.
T Consensus 165 Av~PeVlLmDEPtSALDPIsT~kIEe-Li~eLk~-~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~ 229 (253)
T COG1117 165 AVKPEVLLMDEPTSALDPISTLKIEE-LITELKK-KYTIVIVTHNMQQAARVSDYTAFFYLGELVEF 229 (253)
T ss_pred hcCCcEEEecCcccccCchhHHHHHH-HHHHHHh-ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEE
Confidence 99999999999999999999999998 6666774 589999999988 5668999988888887543
No 164
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.2e-24 Score=226.38 Aligned_cols=166 Identities=18% Similarity=0.242 Sum_probs=133.2
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh---------------------hhhc
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAG 298 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~---------------------aq~G 298 (752)
|+.++++++.|++... ++++.|..| ++++++||||||||||||+| ||..+- ++.|
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l~i~~G-e~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG 80 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISLDIKSG-ELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG 80 (345)
T ss_pred ceeehhhhhhcccccccccceeeecCC-cEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee
Confidence 5788999999998766 899999999 99999999999999999999 555431 1122
Q ss_pred eeecCCC--CCCchHHHH-----------------------HHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEE
Q 004463 299 LYLPAKN--HPRLPWFDL-----------------------ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 352 (752)
Q Consensus 299 ~~vP~~~--~~~l~~~d~-----------------------i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~Ll 352 (752)
|+.|+. +..++++++ ++..+.+++..++.+..||||++ |++++++++.+|++|
T Consensus 81 -fvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vL 159 (345)
T COG1118 81 -FVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVL 159 (345)
T ss_pred -EEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeE
Confidence 333321 223334443 35566677888999999999999 899999999999999
Q ss_pred EEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 004463 353 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 410 (752)
Q Consensus 353 LLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~ 410 (752)
|||||+++||..-+..|-.-+.+...+.|.|++++|||.+ ...+|+++..+.+|.++-
T Consensus 160 LLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieq 218 (345)
T COG1118 160 LLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQ 218 (345)
T ss_pred eecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeee
Confidence 9999999999999999987444443444999999999987 556999999999998754
No 165
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=1.3e-24 Score=220.40 Aligned_cols=156 Identities=19% Similarity=0.199 Sum_probs=122.5
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------------------hhhceee
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYL 301 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------aq~G~~v 301 (752)
|+.++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |+..+- .+.-.|+
T Consensus 1 ml~~~~l~~~~~~~~il~~~s~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~ 79 (200)
T PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAG-GLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFV 79 (200)
T ss_pred CEEEEEEEEEeCCeeEEeeeeEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEe
Confidence 5789999999987666 999999999 99999999999999999999 655320 0112355
Q ss_pred cCCCC--CCchHH----------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCC
Q 004463 302 PAKNH--PRLPWF----------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 362 (752)
Q Consensus 302 P~~~~--~~l~~~----------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD 362 (752)
|+... ...++. +.++..+++.+..++.+.+||+||+ |++++++++.+|+++||||||+|+|
T Consensus 80 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD 159 (200)
T PRK13540 80 GHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD 159 (200)
T ss_pred ccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccC
Confidence 55431 122232 3345556666667888899999999 8999999999999999999999999
Q ss_pred hHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccc
Q 004463 363 PSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKD 400 (752)
Q Consensus 363 ~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~ 400 (752)
+.....+...+.+ +.+.+.|+|++||+.++..-||..
T Consensus 160 ~~~~~~l~~~l~~-~~~~~~tiii~sh~~~~~~~~d~~ 196 (200)
T PRK13540 160 ELSLLTIITKIQE-HRAKGGAVLLTSHQDLPLNKADYE 196 (200)
T ss_pred HHHHHHHHHHHHH-HHHcCCEEEEEeCCchhccccchh
Confidence 9999999995554 566688999999998866656543
No 166
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.92 E-value=1.4e-24 Score=230.85 Aligned_cols=167 Identities=19% Similarity=0.174 Sum_probs=132.6
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------------
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------- 294 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------------- 294 (752)
||+++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |++.+.
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPG-RVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 5789999999988766 999999999 99999999999999999999 766432
Q ss_pred --hhhceeecCCCC--CCchHHH-------------------------HHHHHcCCchhhhcCcccchHHHH-HHHHHHH
Q 004463 295 --SKAGLYLPAKNH--PRLPWFD-------------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILE 344 (752)
Q Consensus 295 --aq~G~~vP~~~~--~~l~~~d-------------------------~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~ 344 (752)
.+...|+|+... ..+++.+ .++..+|+....++.+++|||||+ |++++++
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara 159 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARV 159 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 111245665531 1122222 234456666667889999999999 8999999
Q ss_pred cc---------CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 345 LV---------SRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 345 la---------~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
++ .+|++|||||||+|||+.....+...+. .+.+ .+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 160 l~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~ 236 (272)
T PRK13547 160 LAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVR-RLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAH 236 (272)
T ss_pred HhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHH-HHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEe
Confidence 99 5999999999999999999999999554 4554 4889999999988 4569999999999987654
No 167
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.4e-24 Score=232.50 Aligned_cols=166 Identities=15% Similarity=0.168 Sum_probs=131.8
Q ss_pred EEEcccccccCC-----eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh---------------------
Q 004463 244 MTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 294 (752)
Q Consensus 244 l~~~~ls~~y~~-----~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------------- 294 (752)
++++||++.|++ ..+ ++||+|.+| ++++|+||||||||||||+| |++.+.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQG-KYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 789999999963 234 999999999 99999999999999999999 665321
Q ss_pred --hhhceeecCCCC---CCchHH---------------------HHHHHHcCCc-hhhhcCcccchHHHH-HHHHHHHcc
Q 004463 295 --SKAGLYLPAKNH---PRLPWF---------------------DLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV 346 (752)
Q Consensus 295 --aq~G~~vP~~~~---~~l~~~---------------------d~i~~~ig~~-~~i~~~~stlSgg~k-rl~~i~~la 346 (752)
.+...|+|+... ...++. ..++..+|+. +..++.+.+|||||+ |++++++++
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~ 161 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA 161 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 111246676531 111222 2345567775 567889999999999 899999999
Q ss_pred CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 347 SRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 347 ~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
.+|++|||||||+|||+.....+.. ++..+.+ .|.|||++||+++. ..+|++++.+.+|.+...
T Consensus 162 ~~p~illlDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~ 227 (286)
T PRK13646 162 MNPDIIVLDEPTAGLDPQSKRQVMR-LLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQ 227 (286)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999998 5555654 58999999999884 579999999999988754
No 168
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.92 E-value=2.8e-24 Score=226.48 Aligned_cols=169 Identities=19% Similarity=0.169 Sum_probs=134.0
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh----------------h--------
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------M-------- 294 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~----------------~-------- 294 (752)
.|++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+ +
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 5 PLLSVRGLTKLYGPRKGCRDVSFDLYPG-EVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred ceEEEeeeEEEcCCceeeeeeeEEEeCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 37899999999987665 999999999 99999999999999999999 66432 1
Q ss_pred ----hhhceeecCCCC----CCchH----------------------HHHHHHHcCCc-hhhhcCcccchHHHH-HHHHH
Q 004463 295 ----SKAGLYLPAKNH----PRLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDI 342 (752)
Q Consensus 295 ----aq~G~~vP~~~~----~~l~~----------------------~d~i~~~ig~~-~~i~~~~stlSgg~k-rl~~i 342 (752)
.+...|+|++.. ..++. ++.++..++.. +..++.+++||+||+ |++++
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~la 163 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIA 163 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHH
Confidence 011346776641 11111 12345566775 367899999999999 89999
Q ss_pred HHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhcccccccCCceeec
Q 004463 343 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 411 (752)
Q Consensus 343 ~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~-~~a~~~~~i~~g~v~~~ 411 (752)
++++.+|+++||||||+|||+.....+...+.+...+.|.|+|++||+.+.. .+|++++.+.+|++...
T Consensus 164 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~ 233 (258)
T PRK11701 164 RNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES 233 (258)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999855544344588999999998855 58999999999988654
No 169
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.92 E-value=2.7e-24 Score=215.09 Aligned_cols=152 Identities=22% Similarity=0.216 Sum_probs=114.9
Q ss_pred CCeEEEcccccccCCeeE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh--------------------hhc
Q 004463 241 NSEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------------------KAG 298 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a--------------------q~G 298 (752)
..|++++|+++.| .+ ++||++.+| ++++|+||||+|||||||++ |+..+-. +..
T Consensus 2 ~~~l~~~~l~~~~---~l~~vs~~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 2 EPVLEVRGLSVKG---AVRDVSFEVRAG-EIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred CcEEEEeccEEEe---eecceEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 3478999999999 34 999999999 99999999999999999999 4432110 011
Q ss_pred eeecCCC-----CCCchHHHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHH
Q 004463 299 LYLPAKN-----HPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATS 372 (752)
Q Consensus 299 ~~vP~~~-----~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~a 372 (752)
.|+|++. ...+++.+++... ..||+||+ |++++++++.+|+++||||||+|+|+.....+...
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~-----------~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~ 146 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALS-----------SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRL 146 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHH-----------hhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHH
Confidence 2333321 0112223332110 01999999 89999999999999999999999999999999985
Q ss_pred HHHHHhcCCcEEEEEecchh-HHhhhcccccccCCce
Q 004463 373 ILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAAT 408 (752)
Q Consensus 373 ll~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v 408 (752)
+ ..+.+.+.|+|++||+.+ +..+|++++.+.+|.+
T Consensus 147 l-~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 147 I-RELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred H-HHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 5 455556889999999986 6678999998888753
No 170
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.5e-24 Score=241.33 Aligned_cols=166 Identities=16% Similarity=0.149 Sum_probs=129.3
Q ss_pred EEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------------hhh
Q 004463 244 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKA 297 (752)
Q Consensus 244 l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------------aq~ 297 (752)
+...++.+.|+...+ ++||++.+| ++++|+||||||||||||+| |++.+. .+.
T Consensus 29 ~~~~~~~~~~~~~~~L~~isl~i~~G-ei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~ 107 (400)
T PRK10070 29 LSKEQILEKTGLSLGVKDASLAIEEG-EIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107 (400)
T ss_pred ccHHHHHhhcCCeEEEEeEEEEEcCC-CEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCC
Confidence 445555555654434 999999999 99999999999999999999 665321 012
Q ss_pred ceeecCCCC--CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEE
Q 004463 298 GLYLPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 353 (752)
Q Consensus 298 G~~vP~~~~--~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlL 353 (752)
..|+|+... ..+++. +.++..+|+.+..++.+++|||||+ |++++++++.+|++||
T Consensus 108 igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLL 187 (400)
T PRK10070 108 IAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILL 187 (400)
T ss_pred EEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 346776642 112222 2345667888888999999999999 8999999999999999
Q ss_pred EeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 004463 354 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 410 (752)
Q Consensus 354 LDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~ 410 (752)
|||||+||||..+..+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|++..
T Consensus 188 LDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~ 245 (400)
T PRK10070 188 MDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQ 245 (400)
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999555543445889999999987 456899999999998754
No 171
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.92 E-value=1.1e-24 Score=250.43 Aligned_cols=168 Identities=18% Similarity=0.176 Sum_probs=135.5
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh--------------------hhhc
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAG 298 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------------aq~G 298 (752)
.|++++||++.|++..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+.-
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAALNVYPG-RVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeEEEcCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 37889999999988666 999999999 99999999999999999999 665321 0112
Q ss_pred eeecCCCC--CCchH-------------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCc
Q 004463 299 LYLPAKNH--PRLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES 350 (752)
Q Consensus 299 ~~vP~~~~--~~l~~-------------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~ 350 (752)
.|+|+... ..+++ +..++..+|+.+..++.+++|||||+ |++++++++.+|+
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 161 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESK 161 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 36666531 11111 22345667777777889999999999 8999999999999
Q ss_pred EEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 351 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 351 LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+|||||||+|||+.....+.. ++..+.+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 162 lllLDEPt~~LD~~~~~~l~~-~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~ 222 (501)
T PRK10762 162 VIIMDEPTDALTDTETESLFR-VIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAE 222 (501)
T ss_pred EEEEeCCcCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 999999999999999999998 55556667889999999987 5679999999999987543
No 172
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.92 E-value=1.7e-24 Score=222.70 Aligned_cols=164 Identities=22% Similarity=0.306 Sum_probs=129.3
Q ss_pred EEEcccccccCC----eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh----------------------
Q 004463 244 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------- 294 (752)
Q Consensus 244 l~~~~ls~~y~~----~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~---------------------- 294 (752)
++++||++.|++ ..+ ++||++.+| ++++|+||||+|||||+++| |++.+.
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G-~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPG-EIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHH
Confidence 568899999974 344 999999999 99999999999999999999 554321
Q ss_pred hhhceeecCCCC--CCchH----------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCC
Q 004463 295 SKAGLYLPAKNH--PRLPW----------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 349 (752)
Q Consensus 295 aq~G~~vP~~~~--~~l~~----------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~ 349 (752)
.+...|+|+... ..+++ +..++..+|+...+++.+.+||+||+ |+.++++++.+|
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p 160 (220)
T TIGR02982 81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRP 160 (220)
T ss_pred HhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 112235565431 11111 23345667777788899999999999 899999999999
Q ss_pred cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCce
Q 004463 350 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAAT 408 (752)
Q Consensus 350 ~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v 408 (752)
+++||||||+|||+.....+...+.+...+.+.|+|++||++++..+|++++.+.+|.+
T Consensus 161 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 161 KLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999885544433458999999999997789999998887753
No 173
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.7e-24 Score=224.67 Aligned_cols=165 Identities=16% Similarity=0.153 Sum_probs=132.0
Q ss_pred EEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh-----------------hhceeecCC
Q 004463 245 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-----------------KAGLYLPAK 304 (752)
Q Consensus 245 ~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a-----------------q~G~~vP~~ 304 (752)
.++||+++|+++++ +++|++.+| ++++|+||||+|||||||++ |++.+-+ +.-.++|+.
T Consensus 2 ~~~~l~~~~~~~~il~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (232)
T cd03300 2 ELENVSKFYGGFVALDGVSLDIKEG-EFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQN 80 (232)
T ss_pred EEEeEEEEeCCeeeeccceEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecc
Confidence 57899999987666 999999999 99999999999999999999 5554311 112355555
Q ss_pred CCC--CchH---------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCC
Q 004463 305 NHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 360 (752)
Q Consensus 305 ~~~--~l~~---------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~g 360 (752)
... .+++ ++.++..+|+...+++.+..||+||+ |++++++++.+|+++||||||+|
T Consensus 81 ~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~g 160 (232)
T cd03300 81 YALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGA 160 (232)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 311 1122 12345567887888999999999999 89999999999999999999999
Q ss_pred CChHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 361 TDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 361 lD~~~~~~L~~all~~l~~-~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
||+.....+...+.+ +.+ .|.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 161 LD~~~~~~l~~~l~~-~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~ 212 (232)
T cd03300 161 LDLKLRKDMQLELKR-LQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQI 212 (232)
T ss_pred CCHHHHHHHHHHHHH-HHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEec
Confidence 999999999985554 554 4889999999988 5678999999999987654
No 174
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.9e-24 Score=229.73 Aligned_cols=167 Identities=19% Similarity=0.256 Sum_probs=132.0
Q ss_pred CeEEEcccccccC-CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh----------------hhhceee
Q 004463 242 SEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------SKAGLYL 301 (752)
Q Consensus 242 ~~l~~~~ls~~y~-~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~----------------aq~G~~v 301 (752)
.+++++||++.|+ ++.+ ++||++.+| ++++|+||||||||||||+| |++.+. .....|+
T Consensus 5 ~~l~~~~l~~~~~~~~~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v 83 (272)
T PRK15056 5 AGIVVNDVTVTWRNGHTALRDASFTVPGG-SIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYV 83 (272)
T ss_pred ceEEEEeEEEEecCCcEEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEe
Confidence 3688999999995 4555 999999999 99999999999999999999 775431 1113466
Q ss_pred cCCCCC----Cch-------------------------HHHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcE
Q 004463 302 PAKNHP----RLP-------------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 351 (752)
Q Consensus 302 P~~~~~----~l~-------------------------~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~L 351 (752)
|+.... ... .++.++..+|+....++.+.+|||||+ |++++++++.+|++
T Consensus 84 ~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~l 163 (272)
T PRK15056 84 PQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQV 163 (272)
T ss_pred ccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 665310 000 123346677888788899999999999 89999999999999
Q ss_pred EEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 352 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 352 lLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
|||||||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+|++.+.+ +|++...
T Consensus 164 lllDEPt~~LD~~~~~~l~~-~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~ 222 (272)
T PRK15056 164 ILLDEPFTGVDVKTEARIIS-LLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLAS 222 (272)
T ss_pred EEEeCCCccCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEee
Confidence 99999999999999999998 45556666889999999987 56789987655 7887543
No 175
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.92 E-value=1.6e-24 Score=225.52 Aligned_cols=159 Identities=20% Similarity=0.254 Sum_probs=122.4
Q ss_pred cccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------------------hhhceeec-CCC--C
Q 004463 251 KGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP-AKN--H 306 (752)
Q Consensus 251 ~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------aq~G~~vP-~~~--~ 306 (752)
+.|+.+++ ++||++.+| ++++|+|||||||||||++| |++.+. .+...|+| +.. .
T Consensus 29 ~~~~~~~il~~vs~~i~~G-e~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (236)
T cd03267 29 RKYREVEALKGISFTIEKG-EIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW 107 (236)
T ss_pred cccCCeeeeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccC
Confidence 45566655 999999999 99999999999999999999 665321 11123555 321 1
Q ss_pred CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChH
Q 004463 307 PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 364 (752)
Q Consensus 307 ~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~ 364 (752)
..+++. +.++..+|+.+..++.+.+||+||+ |+.++++++.+|+++||||||+|||+.
T Consensus 108 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 187 (236)
T cd03267 108 WDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVV 187 (236)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 112221 2234556777778889999999999 899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 004463 365 EGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 410 (752)
Q Consensus 365 ~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~ 410 (752)
....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|++..
T Consensus 188 ~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 234 (236)
T cd03267 188 AQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY 234 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 9999999555433445789999999988 567899999999988753
No 176
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.92 E-value=2e-24 Score=224.95 Aligned_cols=165 Identities=18% Similarity=0.216 Sum_probs=132.6
Q ss_pred EEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------hhhceeecCC
Q 004463 245 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAK 304 (752)
Q Consensus 245 ~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------aq~G~~vP~~ 304 (752)
+++|+++.|++..+ ++||++.+| ++++|+||||+||||||++| |++.+. .+...|+|+.
T Consensus 2 ~i~~l~~~~~~~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~ 80 (237)
T TIGR00968 2 EIANISKRFGSFQALDDVNLEVPTG-SLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQH 80 (237)
T ss_pred EEEEEEEEECCeeeeeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecC
Confidence 57899999988766 999999999 99999999999999999999 665321 1122366655
Q ss_pred CC--CCchH---------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCC
Q 004463 305 NH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 360 (752)
Q Consensus 305 ~~--~~l~~---------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~g 360 (752)
.. ...++ ++.++..+++.+..++.+..||+||+ |++++++++.+|+++|||||++|
T Consensus 81 ~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~ 160 (237)
T TIGR00968 81 YALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGA 160 (237)
T ss_pred hhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 31 11111 23446667777778899999999999 89999999999999999999999
Q ss_pred CChHhHHHHHHHHHHHHhcC-CcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 361 TDPSEGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 361 lD~~~~~~L~~all~~l~~~-~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+|+.....+...+. .+.+. ++|+|++||+++ +..+|++++.+.+|++...
T Consensus 161 LD~~~~~~~~~~l~-~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~ 212 (237)
T TIGR00968 161 LDAKVRKELRSWLR-KLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQI 212 (237)
T ss_pred CCHHHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEe
Confidence 99999999998554 45554 789999999988 5678999999999988643
No 177
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.3e-24 Score=216.46 Aligned_cols=152 Identities=23% Similarity=0.340 Sum_probs=114.1
Q ss_pred EEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchH---------HH
Q 004463 245 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW---------FD 313 (752)
Q Consensus 245 ~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~---------~d 313 (752)
+++|+++.|++..+ ++||++.+| ++++|+||||+|||||||++ +|.+.|.+|...+.. ..
T Consensus 2 ~~~~l~~~~~~~~~l~~i~~~i~~G-~~~~i~G~nGsGKSTLl~~l--------~G~~~~~~G~i~~~g~~~~~~~~~~~ 72 (178)
T cd03229 2 ELKNVSKRYGQKTVLNDVSLNIEAG-EIVALLGPSGSGKSTLLRCI--------AGLEEPDSGSILIDGEDLTDLEDELP 72 (178)
T ss_pred EEEEEEEEECCeEEEeeeeEEEcCC-CEEEEECCCCCCHHHHHHHH--------hCCCCCCceEEEECCEEccccchhHH
Confidence 57899999987665 999999999 99999999999999999999 665555544211100 00
Q ss_pred HHHHHcC---------CchhhhcCccc-chHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcC-C
Q 004463 314 LILADIG---------DHQSLEQNLST-FSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-V 381 (752)
Q Consensus 314 ~i~~~ig---------~~~~i~~~~st-lSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~-~ 381 (752)
.+...++ ....+...+.. ||+||+ |+.++++++.+|+++||||||+|+|+.....+.. ++..+.+. +
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~-~l~~~~~~~~ 151 (178)
T cd03229 73 PLRRRIGMVFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRA-LLKSLQAQLG 151 (178)
T ss_pred HHhhcEEEEecCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcC
Confidence 1111111 01122222322 999999 8999999999999999999999999999999998 55556665 7
Q ss_pred cEEEEEecchhHH-hhhcccccccCC
Q 004463 382 GLAVVTTHYADLS-CLKDKDTRFENA 406 (752)
Q Consensus 382 ~tviitTH~~~l~-~~a~~~~~i~~g 406 (752)
.|+|++||+.+.. .+|++++.+.+|
T Consensus 152 ~tiii~sH~~~~~~~~~d~i~~l~~g 177 (178)
T cd03229 152 ITVVLVTHDLDEAARLADRVVVLRDG 177 (178)
T ss_pred CEEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 8999999998854 589998888765
No 178
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.91 E-value=2.4e-24 Score=222.40 Aligned_cols=164 Identities=13% Similarity=0.167 Sum_probs=126.7
Q ss_pred CCeEEEcccccccCC---eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------h
Q 004463 241 NSEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------S 295 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~---~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------a 295 (752)
.+|++++|+++.|++ ..+ ++||++.+| ++++|+||||+||||||+++ |++.+. .
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPG-EVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 478999999999975 234 999999999 99999999999999999999 665321 1
Q ss_pred hhceeecCCCCC-CchHHH------------------------HHHHHc--CCchhhhcCcccchHHHH-HHHHHHHccC
Q 004463 296 KAGLYLPAKNHP-RLPWFD------------------------LILADI--GDHQSLEQNLSTFSGHIS-RIVDILELVS 347 (752)
Q Consensus 296 q~G~~vP~~~~~-~l~~~d------------------------~i~~~i--g~~~~i~~~~stlSgg~k-rl~~i~~la~ 347 (752)
+.-.|+|+.... ..++.+ .++..+ |....++..+.+||+||+ |++++++++.
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 112355554310 001111 123334 556667888999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCc
Q 004463 348 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAA 407 (752)
Q Consensus 348 ~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~ 407 (752)
+|+++||||||+|||+.....+...+.+ +.+ +.|+|++||++++...|++++.+.+|.
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~-~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~ 225 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYD-WPE-RRTVLVIAHRLSTVERADQILVLDGGR 225 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHH-HcC-CCEEEEEECCHHHHHhCCEEEEecCCc
Confidence 9999999999999999999999985554 555 589999999988666799988888775
No 179
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.91 E-value=1.7e-24 Score=219.84 Aligned_cols=157 Identities=22% Similarity=0.276 Sum_probs=122.3
Q ss_pred EEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------------------hhhceeec
Q 004463 244 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP 302 (752)
Q Consensus 244 l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------aq~G~~vP 302 (752)
++++||++.|++..+ ++||++.+| ++++|+||||+||||||++| |+..+. .+...|+|
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAG-EALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 357899999987665 999999999 99999999999999999999 665321 11123455
Q ss_pred CCCCC--CchH---------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChH
Q 004463 303 AKNHP--RLPW---------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 364 (752)
Q Consensus 303 ~~~~~--~l~~---------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~ 364 (752)
+.... ..++ ++.++..+++....++.+.+||+||+ |++++++++.+|+++||||||+|||+.
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 159 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKA 159 (201)
T ss_pred cccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 44311 1222 23445667777778889999999999 899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhccccc
Q 004463 365 EGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTR 402 (752)
Q Consensus 365 ~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~ 402 (752)
....+...+ ..+.+.+.|+|++||+.. +..++++.+.
T Consensus 160 ~~~~l~~~l-~~~~~~g~tiii~sH~~~~~~~~~~~~~~ 197 (201)
T cd03231 160 GVARFAEAM-AGHCARGGMVVLTTHQDLGLSEAGARELD 197 (201)
T ss_pred HHHHHHHHH-HHHHhCCCEEEEEecCchhhhhccceeEe
Confidence 999999855 445666889999999865 6667766543
No 180
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.3e-24 Score=256.23 Aligned_cols=164 Identities=21% Similarity=0.207 Sum_probs=126.1
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh-------hh-ceeecCCCC----C
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------KA-GLYLPAKNH----P 307 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a-------q~-G~~vP~~~~----~ 307 (752)
||.++||+++|+++.+ ++||+|.+| ++++|+||||||||||||+| |++.+-. .. ..|+|+... .
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~G-e~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~ 79 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPG-QKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQP 79 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCC
Confidence 5789999999998776 999999999 99999999999999999999 6554310 00 013333210 0
Q ss_pred CchH---------------------------------------------HHHHHHHcCCc-hhhhcCcccchHHHH-HHH
Q 004463 308 RLPW---------------------------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIV 340 (752)
Q Consensus 308 ~l~~---------------------------------------------~d~i~~~ig~~-~~i~~~~stlSgg~k-rl~ 340 (752)
.+.+ +..++..+|+. ...++++++|||||+ |++
T Consensus 80 ~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~ 159 (638)
T PRK10636 80 ALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLN 159 (638)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHH
Confidence 0110 11234445664 456889999999999 899
Q ss_pred HHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 341 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 341 ~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
++++++.+|+||||||||+|||+.....|...+.+ .+++||++|||++ +..+|++++.+.+|.+..+
T Consensus 160 LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~----~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~ 227 (638)
T PRK10636 160 LAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKS----YQGTLILISHDRDFLDPIVDKIIHIEQQSLFEY 227 (638)
T ss_pred HHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHh----CCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEe
Confidence 99999999999999999999999998877663333 3679999999988 5679999999999987644
No 181
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.6e-24 Score=226.78 Aligned_cols=167 Identities=18% Similarity=0.216 Sum_probs=130.6
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------------------------
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------------- 293 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------------------------- 293 (752)
.|++++|+++.|++..+ ++||++.+| ++++|+|||||||||||++| |+..+
T Consensus 11 ~~l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 11 PQIKVENLNLWYGEKQALKNVSMQIPKN-SVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eeEEEeeeEEEeCCeeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 47889999999987665 999999999 99999999999999999999 76532
Q ss_pred -hhhhceeecCCCC-CCchHHHH---------------------HHHHcCC----chhhhcCcccchHHHH-HHHHHHHc
Q 004463 294 -MSKAGLYLPAKNH-PRLPWFDL---------------------ILADIGD----HQSLEQNLSTFSGHIS-RIVDILEL 345 (752)
Q Consensus 294 -~aq~G~~vP~~~~-~~l~~~d~---------------------i~~~ig~----~~~i~~~~stlSgg~k-rl~~i~~l 345 (752)
..+...|+|+... ...++.++ ++..+++ .+.+++.+.+||+||+ |+++++++
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 169 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTL 169 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHH
Confidence 0111235665531 11222222 3344444 2345778899999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 346 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 346 a~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+.+|+++||||||+|+|+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 170 ~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 234 (258)
T PRK14268 170 AVKPKIILFDEPTSALDPISTARIED-LIMNLKK-DYTIVIVTHNMQQAARISDYTGFFLMGELIEF 234 (258)
T ss_pred HcCCCEEEEeCCCcccCHHHHHHHHH-HHHHHhh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999988 4445554 789999999987 4578999999999987654
No 182
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.7e-24 Score=225.99 Aligned_cols=169 Identities=22% Similarity=0.310 Sum_probs=131.4
Q ss_pred CCCeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh----------------------
Q 004463 240 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------- 294 (752)
Q Consensus 240 g~~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~---------------------- 294 (752)
+..|++++||++.|++..+ ++||++.+| ++++|+||||||||||||++ |++.+-
T Consensus 4 ~~~~l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 4 NEAIIETENLNLFYTDFKALNNINIKILKN-SITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred CCceEEEeeeEEEeCCceeecceeeEEcCC-CEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 3458999999999987665 999999999 99999999999999999999 776421
Q ss_pred ----hhhceeecCCCCC-CchHHHHH----------------------HHHcCC----chhhhcCcccchHHHH-HHHHH
Q 004463 295 ----SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGD----HQSLEQNLSTFSGHIS-RIVDI 342 (752)
Q Consensus 295 ----aq~G~~vP~~~~~-~l~~~d~i----------------------~~~ig~----~~~i~~~~stlSgg~k-rl~~i 342 (752)
.+...|+|+.... ..++++++ +..+++ .+..++.+++|||||+ |++++
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~la 162 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIA 162 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHH
Confidence 0112355655311 12333332 222333 2345778899999999 89999
Q ss_pred HHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 343 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 343 ~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
++++.+|++|||||||+|||+.....+...+.+ +.+ +.|+|++||+.+. ..+|++++.+.+|++...
T Consensus 163 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~-~~~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 230 (254)
T PRK14273 163 RTLAIEPNVILMDEPTSALDPISTGKIEELIIN-LKE-SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEE 230 (254)
T ss_pred HHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHH-Hhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999985544 554 6899999999884 578999999999988654
No 183
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6e-24 Score=224.14 Aligned_cols=169 Identities=21% Similarity=0.243 Sum_probs=131.0
Q ss_pred CCCeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh------hh---------------
Q 004463 240 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------MS--------------- 295 (752)
Q Consensus 240 g~~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------~a--------------- 295 (752)
++.|++++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |++.+ -+
T Consensus 9 ~~~~l~i~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 9 KQEVYQINGMNLWYGQHHALKNINLSIPEN-EVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred CCceEEEeeEEEEECCeeeEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 4568999999999987665 999999999 99999999999999999999 76531 00
Q ss_pred -----hhceeecCCCCC-CchHHHH----------------------HHHHcCCc----hhhhcCcccchHHHH-HHHHH
Q 004463 296 -----KAGLYLPAKNHP-RLPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDI 342 (752)
Q Consensus 296 -----q~G~~vP~~~~~-~l~~~d~----------------------i~~~ig~~----~~i~~~~stlSgg~k-rl~~i 342 (752)
+.-.|+|+.... ..+++++ ++..+++. +.+++.+.+||+||+ |++++
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~la 167 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIA 167 (259)
T ss_pred HHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHH
Confidence 112355655311 0122222 23344543 245778899999999 89999
Q ss_pred HHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 343 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 343 ~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
++++.+|+++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 168 ral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 235 (259)
T PRK14274 168 RALATNPDVLLMDEPTSALDPVSTRKIEELI-LKLKE-KYTIVIVTHNMQQAARVSDQTAFFYMGELVEC 235 (259)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHhc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999998844 45555 689999999988 5679999999999988654
No 184
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.91 E-value=2.4e-24 Score=225.33 Aligned_cols=167 Identities=21% Similarity=0.216 Sum_probs=123.9
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhh--hhh-------------------h-hh
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SLM-------------------S-KA 297 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli--~~~-------------------a-q~ 297 (752)
|++++||++.|++.++ ++||++.+| ++++|+|||||||||||++| |+. .+. . ..
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPG-EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 5789999999987665 999999999 99999999999999999999 763 221 0 11
Q ss_pred ceeecCCCCC--Cch----------------------------HHHHHHHHcCCc-hhhhcCcc-cchHHHH-HHHHHHH
Q 004463 298 GLYLPAKNHP--RLP----------------------------WFDLILADIGDH-QSLEQNLS-TFSGHIS-RIVDILE 344 (752)
Q Consensus 298 G~~vP~~~~~--~l~----------------------------~~d~i~~~ig~~-~~i~~~~s-tlSgg~k-rl~~i~~ 344 (752)
-.|+|+.... .++ .++.++..+++. +..++.++ .|||||+ |++++++
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lara 159 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQM 159 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHH
Confidence 1244444210 000 011122333332 23344454 7999999 8999999
Q ss_pred ccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHh-h-hcccccccCCceeec
Q 004463 345 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC-L-KDKDTRFENAATEFS 411 (752)
Q Consensus 345 la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~-~-a~~~~~i~~g~v~~~ 411 (752)
++.+|++|||||||+|||+.....+.. ++..+.+.++|+|++||++++.. + +++++.+.+|++...
T Consensus 160 l~~~p~illLDEPt~~LD~~~~~~l~~-~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~ 227 (248)
T PRK09580 160 AVLEPELCILDESDSGLDIDALKIVAD-GVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS 227 (248)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEe
Confidence 999999999999999999999999988 55557777889999999988554 4 788888888887543
No 185
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.9e-24 Score=248.84 Aligned_cols=168 Identities=15% Similarity=0.172 Sum_probs=136.2
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh--h--------------------hh
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--M--------------------SK 296 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~--~--------------------aq 296 (752)
.|++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |++.+ . .+
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAG-EIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 37899999999988766 999999999 99999999999999999999 77653 0 01
Q ss_pred hceeecCCCC--CCchH------------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCC
Q 004463 297 AGLYLPAKNH--PRLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 349 (752)
Q Consensus 297 ~G~~vP~~~~--~~l~~------------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~ 349 (752)
.-.|+|+... ..+++ ++.++..+|+....++.+++|||||+ |++++++++.+|
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p 162 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQA 162 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCC
Confidence 1236666531 11111 23345667777777899999999999 899999999999
Q ss_pred cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 350 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 350 ~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
++|||||||+|||+.....+.. ++..+.+.|.++|++||+.+ +..+|++++.+.+|++...
T Consensus 163 ~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~ 224 (506)
T PRK13549 163 RLLILDEPTASLTESETAVLLD-IIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGT 224 (506)
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeee
Confidence 9999999999999999999998 55556667889999999987 5668999999999987654
No 186
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.91 E-value=3.1e-24 Score=227.64 Aligned_cols=168 Identities=17% Similarity=0.167 Sum_probs=131.5
Q ss_pred eEEEcccccccC---------CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh----------------
Q 004463 243 EMTVGSLSKGIS---------DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------- 294 (752)
Q Consensus 243 ~l~~~~ls~~y~---------~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~---------------- 294 (752)
||+++||++.|+ ++.+ ++||++.+| ++++|+|||||||||||++| |+..+.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSG-ETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 688999999997 3445 999999999 99999999999999999999 665321
Q ss_pred ------hhhceeecCCCC----CCchH----------------------HHHHHHHcCCc-hhhhcCcccchHHHH-HHH
Q 004463 295 ------SKAGLYLPAKNH----PRLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIV 340 (752)
Q Consensus 295 ------aq~G~~vP~~~~----~~l~~----------------------~d~i~~~ig~~-~~i~~~~stlSgg~k-rl~ 340 (752)
.+...|+|+... ...+. ++.++..+|+. ...++.+..||+||+ |++
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence 112335665531 01111 22345566775 567889999999999 899
Q ss_pred HHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 341 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 341 ~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
++++++.+|++|||||||+|||+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 233 (268)
T PRK10419 162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET 233 (268)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeee
Confidence 9999999999999999999999999999988555433344889999999988 4569999999999987654
No 187
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3e-24 Score=227.64 Aligned_cols=169 Identities=18% Similarity=0.251 Sum_probs=130.6
Q ss_pred CCCeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhh-----h------------------
Q 004463 240 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-----L------------------ 293 (752)
Q Consensus 240 g~~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~-----~------------------ 293 (752)
+..|++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+.. +
T Consensus 18 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 18 KEHILEVKDLSIYYGEKRAVNDISMDIEKH-AVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred CCceEEEEEEEEEeCCceeeeceEEEEcCC-CEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 3458899999999987665 999999999 99999999999999999999 7642 1
Q ss_pred ---hhhhceeecCCCCC-CchHHHHH----------------------HHHcCCc----hhhhcCcccchHHHH-HHHHH
Q 004463 294 ---MSKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDI 342 (752)
Q Consensus 294 ---~aq~G~~vP~~~~~-~l~~~d~i----------------------~~~ig~~----~~i~~~~stlSgg~k-rl~~i 342 (752)
..+...|+|+.... ..++++++ +..++.. ...++.+++|||||+ |++++
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~la 176 (268)
T PRK14248 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIA 176 (268)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHH
Confidence 01112356655311 11223222 2233332 345678899999999 89999
Q ss_pred HHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 343 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 343 ~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
++++.+|++|||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 177 ral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~ 244 (268)
T PRK14248 177 RTLAMKPAVLLLDEPASALDPISNAKIEE-LITELKE-EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEY 244 (268)
T ss_pred HHHhCCCCEEEEcCCCcccCHHHHHHHHH-HHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999988 4445554 589999999987 5679999999999988654
No 188
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.91 E-value=2.2e-24 Score=237.49 Aligned_cols=163 Identities=20% Similarity=0.218 Sum_probs=130.4
Q ss_pred ccccccCCeeEeeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------------hhhceeecC
Q 004463 248 SLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGLYLPA 303 (752)
Q Consensus 248 ~ls~~y~~~~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------------aq~G~~vP~ 303 (752)
||+++|++..+++||++.+| ++++|+||||||||||||+| |+..+- .+...|+|+
T Consensus 4 ~l~~~~~~~~~~isl~i~~G-ei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q 82 (354)
T TIGR02142 4 RFSKRLGDFSLDADFTLPGQ-GVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQ 82 (354)
T ss_pred EEEEEECCEEEEEEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEec
Confidence 78999988777999999999 99999999999999999999 665421 011235565
Q ss_pred CCC--CCchHH-------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCC
Q 004463 304 KNH--PRLPWF-------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 361 (752)
Q Consensus 304 ~~~--~~l~~~-------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~gl 361 (752)
... ..+++. +.++..+|+.+..++.+++|||||+ |++++++++.+|++|||||||+||
T Consensus 83 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 83 EARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred CCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 531 112222 3345667788888999999999999 899999999999999999999999
Q ss_pred ChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 362 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 362 D~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
|+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 213 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAA 213 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEE
Confidence 9999999998555443344889999999987 5568999999999987644
No 189
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=4.2e-24 Score=232.69 Aligned_cols=167 Identities=22% Similarity=0.212 Sum_probs=133.0
Q ss_pred eEEEcccccccCC----ee-E-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh------------------h---
Q 004463 243 EMTVGSLSKGISD----FP-V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------M--- 294 (752)
Q Consensus 243 ~l~~~~ls~~y~~----~~-v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------------------~--- 294 (752)
+|+++||++.|++ .. + ++||+|.+| ++++|+||||||||||+++| |++.. +
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~G-e~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQG-EVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCC-CEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 5889999999976 23 3 999999999 99999999999999999999 87641 0
Q ss_pred --h----hhceeecCCCC----CCchH----------------------HHHHHHHcCCch---hhhcCcccchHHHH-H
Q 004463 295 --S----KAGLYLPAKNH----PRLPW----------------------FDLILADIGDHQ---SLEQNLSTFSGHIS-R 338 (752)
Q Consensus 295 --a----q~G~~vP~~~~----~~l~~----------------------~d~i~~~ig~~~---~i~~~~stlSgg~k-r 338 (752)
. +...++|++.. ..+.+ ...++..+|+.+ .+++.+..|||||+ |
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QR 161 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQR 161 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHH
Confidence 0 12357777642 11111 123456667653 46789999999999 8
Q ss_pred HHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchhHH-hhhcccccccCCceeec
Q 004463 339 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 411 (752)
Q Consensus 339 l~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~l~-~~a~~~~~i~~g~v~~~ 411 (752)
++++++++.+|+|||+||||+|||+.....+...+ ..+.+ .|.|+|++|||+.+. .+||++..+.+|++...
T Consensus 162 v~iArAL~~~P~llilDEPts~LD~~~~~~il~lL-~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 162 VMIAMAIACRPKLLIADEPTTALDVTIQAQIIELL-LELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999944 44554 688999999999854 69999999999988644
No 190
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.91 E-value=3.5e-24 Score=225.34 Aligned_cols=168 Identities=14% Similarity=0.191 Sum_probs=130.7
Q ss_pred eEEEcccccccCCeeE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh----h-----------------hhhce
Q 004463 243 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----M-----------------SKAGL 299 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~----~-----------------aq~G~ 299 (752)
+++++||+++|+...+ ++||++.+| ++++|+||||+||||||++| |+..+ - .+...
T Consensus 4 ~l~~~~l~~~~~~~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~ 82 (254)
T PRK10418 4 QIELRNIALQAAQPLVHGVSLTLQRG-RVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIA 82 (254)
T ss_pred EEEEeCeEEEeccceecceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEE
Confidence 6889999999943333 999999999 99999999999999999999 77643 1 01234
Q ss_pred eecCCCC----CCchH-------------------HHHHHHHcCCch---hhhcCcccchHHHH-HHHHHHHccCCCcEE
Q 004463 300 YLPAKNH----PRLPW-------------------FDLILADIGDHQ---SLEQNLSTFSGHIS-RIVDILELVSRESLV 352 (752)
Q Consensus 300 ~vP~~~~----~~l~~-------------------~d~i~~~ig~~~---~i~~~~stlSgg~k-rl~~i~~la~~~~Ll 352 (752)
|+|++.. ....+ +..++..+++.. .+++.+.+||+||+ |++++++++.+|++|
T Consensus 83 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lL 162 (254)
T PRK10418 83 TIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFI 162 (254)
T ss_pred EEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEE
Confidence 6666631 11111 122344556554 46788999999999 899999999999999
Q ss_pred EEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 353 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 353 LLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
||||||+|||+.....+...+.+...+.|.|+|++||+.+. ..+|++++.+.+|++..+
T Consensus 163 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~ 222 (254)
T PRK10418 163 IADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQ 222 (254)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999885544334458899999999884 568999999999988654
No 191
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.8e-24 Score=246.70 Aligned_cols=168 Identities=17% Similarity=0.199 Sum_probs=135.8
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------h-hhc
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------S-KAG 298 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------a-q~G 298 (752)
.|++++|++++|++..+ ++||++.+| ++++|+||||||||||||+| |++.+. . +..
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPG-EIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 47899999999988766 999999999 99999999999999999999 665320 1 112
Q ss_pred eeecCCCC--CCchH----------------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccC
Q 004463 299 LYLPAKNH--PRLPW----------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS 347 (752)
Q Consensus 299 ~~vP~~~~--~~l~~----------------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~ 347 (752)
.|+|+... ..+++ +..++..+|+.+..++.+++|||||+ |++++++++.
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~ 162 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLML 162 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc
Confidence 36666531 11111 12345566777777899999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 348 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 348 ~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+|++|||||||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+|++++.+.+|++.+.
T Consensus 163 ~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~ 226 (510)
T PRK09700 163 DAKVIIMDEPTSSLTNKEVDYLFL-IMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCS 226 (510)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeee
Confidence 999999999999999999999998 55556767899999999987 5569999999999987544
No 192
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=3.5e-24 Score=221.45 Aligned_cols=166 Identities=15% Similarity=0.157 Sum_probs=124.9
Q ss_pred eEEEcccccccCC-eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhhce
Q 004463 243 EMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 299 (752)
Q Consensus 243 ~l~~~~ls~~y~~-~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~G~ 299 (752)
.++++|+++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+. .....
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPG-ETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence 3678999999974 334 999999999 99999999999999999999 665321 11124
Q ss_pred eecCCCCC-CchHHHHH---------------HHHcCC-----------chhhhcCcccchHHHH-HHHHHHHccCCCcE
Q 004463 300 YLPAKNHP-RLPWFDLI---------------LADIGD-----------HQSLEQNLSTFSGHIS-RIVDILELVSRESL 351 (752)
Q Consensus 300 ~vP~~~~~-~l~~~d~i---------------~~~ig~-----------~~~i~~~~stlSgg~k-rl~~i~~la~~~~L 351 (752)
|+|+.... ..++.+++ +..++. ...+.+.+..||+||+ |+.++++++.+|++
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l 160 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 55655310 01222221 122222 2233455689999999 89999999999999
Q ss_pred EEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 352 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 352 lLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
|||||||+|||+.....+...+ ..+.+ +.|+|++||+.+....|++++.+.+|.+...
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l-~~~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~ 218 (229)
T cd03254 161 LILDEATSNIDTETEKLIQEAL-EKLMK-GRTSIIIAHRLSTIKNADKILVLDDGKIIEE 218 (229)
T ss_pred EEEeCccccCCHHHHHHHHHHH-HHhcC-CCEEEEEecCHHHHhhCCEEEEEeCCeEEEe
Confidence 9999999999999999998854 44554 7899999999886667999999999987653
No 193
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=9.3e-25 Score=214.12 Aligned_cols=167 Identities=19% Similarity=0.230 Sum_probs=133.6
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHH-hhhh-------------------hhh----
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLG-LASL-------------------MSK---- 296 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iG-li~~-------------------~aq---- 296 (752)
|++++||+|.|+++.| ++++.+++| .++.|+||||+||||||.+++ |+.. +|+
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g-~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKG-GITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCC-ceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 6889999999999887 999999999 999999999999999999993 3321 111
Q ss_pred ------------------hceeecCCCCC---CchHHHHHHHHcCCchhhhcCcccchHHHHHHHHH-HHccCCCcEEEE
Q 004463 297 ------------------AGLYLPAKNHP---RLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDI-LELVSRESLVLI 354 (752)
Q Consensus 297 ------------------~G~~vP~~~~~---~l~~~d~i~~~ig~~~~i~~~~stlSgg~krl~~i-~~la~~~~LlLL 354 (752)
.|-|.-..|.. ....+++.+..+++.+.-++.+.+||||+++.+++ +.++.+.+.+||
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlL 159 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLL 159 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEe
Confidence 11111111100 11125667788889999999999999999966655 779999999999
Q ss_pred eCCCCCCChHhHHHHHHHHHHHH-hcCCcEEEEEecchhHHh-hhcccccccCCceeec
Q 004463 355 DEIGSGTDPSEGVALATSILQYL-RDRVGLAVVTTHYADLSC-LKDKDTRFENAATEFS 411 (752)
Q Consensus 355 DEp~~glD~~~~~~L~~all~~l-~~~~~tviitTH~~~l~~-~a~~~~~i~~g~v~~~ 411 (752)
|||.++||......++. +++.+ .+-|.|+++|-||.+++. |+|+++.++||.+...
T Consensus 160 DEPLNNLDmkHsv~iMk-~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~ 217 (252)
T COG4604 160 DEPLNNLDMKHSVQIMK-ILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQ 217 (252)
T ss_pred cCcccccchHHHHHHHH-HHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEec
Confidence 99999999999999999 55555 456999999999999775 9999999999988653
No 194
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.91 E-value=2.9e-24 Score=217.05 Aligned_cols=155 Identities=14% Similarity=0.178 Sum_probs=120.3
Q ss_pred eEEEcccccccCCeeE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------h--------hhceeecCCC
Q 004463 243 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S--------KAGLYLPAKN 305 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------a--------q~G~~vP~~~ 305 (752)
|+.++|++++|++..+ ++||++.+| ++++|+|||||||||||+++ |+..+- . +...|+|+..
T Consensus 1 ~l~~~~l~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (195)
T PRK13541 1 MLSLHQLQFNIEQKNLFDLSITFLPS-AITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNL 79 (195)
T ss_pred CeEEEEeeEEECCcEEEEEEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCc
Confidence 5778999999987666 999999999 99999999999999999999 664321 0 1112445432
Q ss_pred C--CCchHH----------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhH
Q 004463 306 H--PRLPWF----------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 366 (752)
Q Consensus 306 ~--~~l~~~----------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~ 366 (752)
. ...++. ..++..+++.+..++..++||+||+ |++++++++.+|+++||||||+|+|+...
T Consensus 80 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~ 159 (195)
T PRK13541 80 GLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENR 159 (195)
T ss_pred CCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 1 112222 2334556777778899999999999 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecchhHHhhhcc
Q 004463 367 VALATSILQYLRDRVGLAVVTTHYADLSCLKDK 399 (752)
Q Consensus 367 ~~L~~all~~l~~~~~tviitTH~~~l~~~a~~ 399 (752)
..+...+ ....+.+.|+|++||+.+....++.
T Consensus 160 ~~l~~~l-~~~~~~~~tiii~sh~~~~i~~~~~ 191 (195)
T PRK13541 160 DLLNNLI-VMKANSGGIVLLSSHLESSIKSAQI 191 (195)
T ss_pred HHHHHHH-HHHHhCCCEEEEEeCCccccchhhe
Confidence 8888844 4455678999999999886555543
No 195
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.6e-24 Score=224.53 Aligned_cols=166 Identities=17% Similarity=0.257 Sum_probs=130.5
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh------hh------------------
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------MS------------------ 295 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------~a------------------ 295 (752)
+++++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |+..+ -+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDN-TITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 5789999999987665 999999999 99999999999999999999 77641 00
Q ss_pred hhceeecCCCC--CCchHHHHH-----------------------HHHcCCc----hhhhcCcccchHHHH-HHHHHHHc
Q 004463 296 KAGLYLPAKNH--PRLPWFDLI-----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 345 (752)
Q Consensus 296 q~G~~vP~~~~--~~l~~~d~i-----------------------~~~ig~~----~~i~~~~stlSgg~k-rl~~i~~l 345 (752)
....|+|+... ..+++.+++ +..+|+. ...++.+.+|||||+ |+++++++
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 161 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARAL 161 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHH
Confidence 11236666532 123333333 2334442 245778899999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 346 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 346 a~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
+.+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+++. ..+|++++.+.+|++...
T Consensus 162 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~-~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 226 (250)
T PRK14247 162 AFQPEVLLADEPTANLDPENTAKIESLFL-ELKK-DMTIVLVTHFPQQAARISDYVAFLYKGQIVEW 226 (250)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEE
Confidence 99999999999999999999999998554 4554 7899999999884 579999999999987654
No 196
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.9e-24 Score=224.64 Aligned_cols=167 Identities=20% Similarity=0.240 Sum_probs=129.0
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhh-----h-----------h--------
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-----L-----------M-------- 294 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~-----~-----------~-------- 294 (752)
.+++++||++.|++..+ ++||++.+| ++++|+||||||||||||++ |+.. + +
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 5 PKMEARGLSFFYGDFQALHDISLEFEQN-QVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred cEEEEeeeEEEECCeeeecceeEEEeCC-CEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 36789999999987665 999999999 99999999999999999999 7642 1 0
Q ss_pred --hhhceeecCCCCC-CchHHHHH----------------------HHHcCCc----hhhhcCcccchHHHH-HHHHHHH
Q 004463 295 --SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILE 344 (752)
Q Consensus 295 --aq~G~~vP~~~~~-~l~~~d~i----------------------~~~ig~~----~~i~~~~stlSgg~k-rl~~i~~ 344 (752)
.+...|+|+.... ..++.+++ +..+++. ..+++.+.+|||||+ |++++++
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara 163 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARA 163 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHH
Confidence 0112356665311 11233332 2333442 234677899999999 8999999
Q ss_pred ccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 345 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 345 la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
++.+|++|||||||+|||+.....+...+ ..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 164 l~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~-~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14242 164 LAVEPEVLLMDEPASALDPIATQKIEELI-HELKA-RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEV 229 (253)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhc-CCeEEEEEecHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999998855 44554 689999999987 5579999999999988654
No 197
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=8.5e-24 Score=221.74 Aligned_cols=167 Identities=20% Similarity=0.223 Sum_probs=129.4
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhh---hh---h------------------
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA---SL---M------------------ 294 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli---~~---~------------------ 294 (752)
.|++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+. .. -
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEK-SVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCC-CEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 37889999999987665 999999999 99999999999999999999 552 11 0
Q ss_pred --hhhceeecCCCCC-CchHHH----------------------HHHHHcCCc----hhhhcCcccchHHHH-HHHHHHH
Q 004463 295 --SKAGLYLPAKNHP-RLPWFD----------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDILE 344 (752)
Q Consensus 295 --aq~G~~vP~~~~~-~l~~~d----------------------~i~~~ig~~----~~i~~~~stlSgg~k-rl~~i~~ 344 (752)
.+...|+|+.... ..++.+ .++..+|+. +..++.+.+||+||+ |++++++
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 160 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARA 160 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHH
Confidence 0113456665311 012222 233445543 245678889999999 8999999
Q ss_pred ccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 345 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 345 la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
++.+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 161 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~ 226 (250)
T PRK14245 161 MAVSPSVLLMDEPASALDPISTAKVEELIH-ELKK-DYTIVIVTHNMQQAARVSDKTAFFYMGEMVEY 226 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHH-HHhc-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEE
Confidence 999999999999999999999999988554 4554 789999999988 5579999999999988644
No 198
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=4.2e-24 Score=227.65 Aligned_cols=167 Identities=16% Similarity=0.121 Sum_probs=132.2
Q ss_pred eEEEcccccccCC---eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhh
Q 004463 243 EMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 297 (752)
Q Consensus 243 ~l~~~~ls~~y~~---~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~ 297 (752)
|++++||++.|++ .++ ++||++.+| ++++|+||||+||||||++| |+..+. .+.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 82 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKG-EWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcc
Confidence 6889999999974 223 999999999 99999999999999999999 665321 111
Q ss_pred ceeecCCC---CCCchHHH---------------------HHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEE
Q 004463 298 GLYLPAKN---HPRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 352 (752)
Q Consensus 298 G~~vP~~~---~~~l~~~d---------------------~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~Ll 352 (752)
..|+|+.. ....++.+ .++..+|+.+..++.+.+||+||+ |+.++++++.+|++|
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~ll 162 (277)
T PRK13642 83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEII 162 (277)
T ss_pred eEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 23566653 11222222 234455666777889999999999 899999999999999
Q ss_pred EEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 353 LIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 353 LLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
||||||+|||+.....+...+ ..+.+ .|.|+|++||+++....|++++.+.+|.+...
T Consensus 163 llDEPt~~LD~~~~~~l~~~l-~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~ 221 (277)
T PRK13642 163 ILDESTSMLDPTGRQEIMRVI-HEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKE 221 (277)
T ss_pred EEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999844 45555 48999999999986667999999999987643
No 199
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=2.9e-24 Score=222.78 Aligned_cols=164 Identities=15% Similarity=0.166 Sum_probs=124.2
Q ss_pred EEcccccccCCe--eE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhhcee
Q 004463 245 TVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 300 (752)
Q Consensus 245 ~~~~ls~~y~~~--~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~G~~ 300 (752)
+++|+++.|++. .+ ++||++.+| ++++|+|||||||||||+++ |++.+. .+...|
T Consensus 2 ~~~~l~~~~~~~~~~~l~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 2 EFKNVTFRYPGDGPPVLRDISLDIPAG-ETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred EEEEEEEEeCCCCccceeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 578999999764 44 999999999 99999999999999999999 665421 111235
Q ss_pred ecCCCC-CCchHHHHH------------------------HHHc--CCchhhhcCcccchHHHH-HHHHHHHccCCCcEE
Q 004463 301 LPAKNH-PRLPWFDLI------------------------LADI--GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 352 (752)
Q Consensus 301 vP~~~~-~~l~~~d~i------------------------~~~i--g~~~~i~~~~stlSgg~k-rl~~i~~la~~~~Ll 352 (752)
+|+... ...++.+++ +..+ +.....++.+.+||+||+ |+.++++++.+|+++
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 555431 112222222 1111 233334567889999999 899999999999999
Q ss_pred EEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 353 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 353 LLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
||||||+|||+.....+.. ++..+.+ +.++|++||+.+....|++++.+.+|++...
T Consensus 161 lLDEP~~~LD~~~~~~l~~-~l~~~~~-~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~ 217 (234)
T cd03251 161 ILDEATSALDTESERLVQA-ALERLMK-NRTTFVIAHRLSTIENADRIVVLEDGKIVER 217 (234)
T ss_pred EEeCccccCCHHHHHHHHH-HHHHhcC-CCEEEEEecCHHHHhhCCEEEEecCCeEeee
Confidence 9999999999999999988 5555554 7899999999886566999999999987643
No 200
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.8e-24 Score=225.09 Aligned_cols=169 Identities=20% Similarity=0.183 Sum_probs=131.2
Q ss_pred CCCeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-----h-----------------
Q 004463 240 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M----------------- 294 (752)
Q Consensus 240 g~~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-----~----------------- 294 (752)
..++++++|+++.|++..+ ++||+|.+| ++++|+||||||||||||+| |++.+ .
T Consensus 10 ~~~~l~~~~l~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 10 APSKIQVRNLNFYYGKFHALKNINLDIAKN-QVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CCceEEEEEEEEEeCCeEEeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 3568999999999987665 999999999 99999999999999999999 77530 0
Q ss_pred ----hhhceeecCCCC-CCchHHHH----------------------HHHHcCC----chhhhcCcccchHHHH-HHHHH
Q 004463 295 ----SKAGLYLPAKNH-PRLPWFDL----------------------ILADIGD----HQSLEQNLSTFSGHIS-RIVDI 342 (752)
Q Consensus 295 ----aq~G~~vP~~~~-~~l~~~d~----------------------i~~~ig~----~~~i~~~~stlSgg~k-rl~~i 342 (752)
.+...|+|+... ...++.++ ++..+++ ...+++.+.+||+||+ |++++
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 168 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIA 168 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHH
Confidence 011235565531 11222222 2334443 2346778899999999 89999
Q ss_pred HHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 343 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 343 ~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
++++.+|++|||||||+|||+.....+...+. .+.+ +.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 169 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~-~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 236 (260)
T PRK10744 169 RGIAIRPEVLLLDEPCSALDPISTGRIEELIT-ELKQ-DYTVVIVTHNMQQAARCSDYTAFMYLGELIEF 236 (260)
T ss_pred HHHHCCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999988444 4554 689999999987 5578999999999988654
No 201
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.91 E-value=2.9e-24 Score=223.35 Aligned_cols=164 Identities=16% Similarity=0.092 Sum_probs=124.4
Q ss_pred EEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhhcee
Q 004463 245 TVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY 300 (752)
Q Consensus 245 ~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~G~~ 300 (752)
+++||++.|++ .++ ++||++.+| ++++|+||||+||||||++| |+..+. .+...|
T Consensus 2 ~~~~l~~~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 2 TFEHVRFRYKPDGPVILDNISLRIKPG-EVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred EEEEEEEecCCCCccceeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57899999963 334 999999999 99999999999999999999 665321 111245
Q ss_pred ecCCCCC-CchHHHHH---------------HHHc-----------CCchhhhcCcccchHHHH-HHHHHHHccCCCcEE
Q 004463 301 LPAKNHP-RLPWFDLI---------------LADI-----------GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 352 (752)
Q Consensus 301 vP~~~~~-~l~~~d~i---------------~~~i-----------g~~~~i~~~~stlSgg~k-rl~~i~~la~~~~Ll 352 (752)
+|+.... ..++.+++ +... +....+++.+.+|||||+ |++++++++.+|+++
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 6665311 11222222 1111 222334567899999999 899999999999999
Q ss_pred EEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 353 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 353 LLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
||||||+|||+.....+...+. .+.+ |.|+|++||+.+....|++++.+.+|.+...
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~-~~~~-~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~ 217 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMH-DICA-GRTVIIIAHRLSTVKNADRIIVMEKGRIVEQ 217 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHH-HhcC-CCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999554 4554 7899999999986677999999999988654
No 202
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.91 E-value=3.2e-24 Score=242.15 Aligned_cols=168 Identities=15% Similarity=0.092 Sum_probs=130.5
Q ss_pred CeEEEcccccccCCe---eE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhhh----hc--eeecCC--CCC
Q 004463 242 SEMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK----AG--LYLPAK--NHP 307 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~---~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~aq----~G--~~vP~~--~~~ 307 (752)
.|+.++||++.|++. ++ ++||++.+| ++++|+||||+||||||++| |++.+..- .| .+++.. -..
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~G-EivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~ 98 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEG-EIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNG 98 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeCC-CEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCC
Confidence 478999999999873 34 999999999 99999999999999999999 55533110 00 000000 001
Q ss_pred CchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHh
Q 004463 308 RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 365 (752)
Q Consensus 308 ~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~ 365 (752)
.+++. +.++..+++.+.+++.+.+|||||+ |++++++++.+|++|||||||+|||+..
T Consensus 99 ~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~s 178 (549)
T PRK13545 99 QLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTF 178 (549)
T ss_pred CCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 11221 2345566777788999999999999 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 366 GVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 366 ~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
...+... +..+.+.|+|+|++||+++ +..+|++++.+.+|.+...
T Consensus 179 r~~Llel-L~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~ 224 (549)
T PRK13545 179 TKKCLDK-MNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEY 224 (549)
T ss_pred HHHHHHH-HHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999884 4556667899999999987 5678999999999987654
No 203
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=9.3e-24 Score=226.07 Aligned_cols=169 Identities=20% Similarity=0.245 Sum_probs=131.0
Q ss_pred CCCeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhh--h--------------h------
Q 004463 240 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--L--------------M------ 294 (752)
Q Consensus 240 g~~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~--~--------------~------ 294 (752)
|..++.++||++.|++..+ ++||+|.+| ++++|+|||||||||||++| |+.. + +
T Consensus 36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFEAVKKVNADILSK-YVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred CceEEEEeeeEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 4568899999999987655 999999999 99999999999999999999 7642 1 0
Q ss_pred ----hhhceeecCCCCCC-chHHHH----------------------HHHHcCC----chhhhcCcccchHHHH-HHHHH
Q 004463 295 ----SKAGLYLPAKNHPR-LPWFDL----------------------ILADIGD----HQSLEQNLSTFSGHIS-RIVDI 342 (752)
Q Consensus 295 ----aq~G~~vP~~~~~~-l~~~d~----------------------i~~~ig~----~~~i~~~~stlSgg~k-rl~~i 342 (752)
.+...|+|+..... .+++++ ++..+|+ .+..++.+.+|||||+ |++++
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 194 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVA 194 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHH
Confidence 01123566653210 122222 2333443 2456788899999999 89999
Q ss_pred HHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 343 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 343 ~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
++++.+|++|||||||+|||+.....+.. ++..+.. +.++|++||+.+. ..+|++++.+.+|++..+
T Consensus 195 raL~~~p~lllLDEPt~gLD~~~~~~l~~-~L~~~~~-~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~ 262 (286)
T PRK14275 195 RTLAVEPEILLLDEPTSALDPKATAKIED-LIQELRG-SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEH 262 (286)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999998 4445554 5899999999884 578999999999988654
No 204
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.91 E-value=4.9e-24 Score=212.36 Aligned_cols=155 Identities=21% Similarity=0.209 Sum_probs=116.7
Q ss_pred EEcccccccCCe--eE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCch-----HH-HH
Q 004463 245 TVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP-----WF-DL 314 (752)
Q Consensus 245 ~~~~ls~~y~~~--~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~-----~~-d~ 314 (752)
+++|+++.|++. ++ ++||++.+| ++++|+||||+|||||||++ +|...|.+|...+. .. ..
T Consensus 2 ~~~~~~~~~~~~~~~~l~~i~~~i~~G-e~~~i~G~nGsGKStLl~~l--------~G~~~~~~G~i~~~g~~~~~~~~~ 72 (178)
T cd03247 2 SINNVSFSYPEQEQQVLKNLSLELKQG-EKIALLGRSGSGKSTLLQLL--------TGDLKPQQGEITLDGVPVSDLEKA 72 (178)
T ss_pred EEEEEEEEeCCCCccceEEEEEEEcCC-CEEEEECCCCCCHHHHHHHH--------hccCCCCCCEEEECCEEHHHHHHH
Confidence 578999999764 34 999999999 99999999999999999999 55555554422111 00 00
Q ss_pred HHHHcCC--------chhhhcC-cccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEE
Q 004463 315 ILADIGD--------HQSLEQN-LSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLA 384 (752)
Q Consensus 315 i~~~ig~--------~~~i~~~-~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tv 384 (752)
+-..++. ...+..+ +.+||+||+ |+.++++++.+|+++||||||+|||+.....+...+ ..+. ++.|+
T Consensus 73 ~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l-~~~~-~~~ti 150 (178)
T cd03247 73 LSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI-FEVL-KDKTL 150 (178)
T ss_pred HHhhEEEEccCCeeecccHHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH-HHHc-CCCEE
Confidence 1111110 0011111 789999999 899999999999999999999999999999999855 4454 47899
Q ss_pred EEEecchhHHhhhcccccccCCceee
Q 004463 385 VVTTHYADLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 385 iitTH~~~l~~~a~~~~~i~~g~v~~ 410 (752)
|++||+.++...|++.+.+.+|.+..
T Consensus 151 i~~sh~~~~~~~~d~~~~l~~g~i~~ 176 (178)
T cd03247 151 IWITHHLTGIEHMDKILFLENGKIIM 176 (178)
T ss_pred EEEecCHHHHHhCCEEEEEECCEEEe
Confidence 99999998667899998898887753
No 205
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.6e-24 Score=222.91 Aligned_cols=167 Identities=20% Similarity=0.219 Sum_probs=129.8
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------h-----------------
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------S----------------- 295 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------a----------------- 295 (752)
.|++++||++.|++.++ ++||++.+| ++++|+|||||||||||+++ |++.+- +
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 3 FAIETVNLRVYYGSNHVIKGVDLKIPQN-GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred ceEEEEeEEEEeCCeeeeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 36889999999987665 999999999 99999999999999999999 775420 0
Q ss_pred ---hhceeecCCCC--CCchHHHHH-----------------------HHHcCCc----hhhhcCcccchHHHH-HHHHH
Q 004463 296 ---KAGLYLPAKNH--PRLPWFDLI-----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDI 342 (752)
Q Consensus 296 ---q~G~~vP~~~~--~~l~~~d~i-----------------------~~~ig~~----~~i~~~~stlSgg~k-rl~~i 342 (752)
+...|+|+... ..+++.+++ +..+|+. ...++.+.+||+|++ |++++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 161 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIA 161 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHH
Confidence 11235555531 112333322 2334432 345678899999999 89999
Q ss_pred HHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 343 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 343 ~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
++++.+|+++||||||+|||+.....+...+.+ +.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 162 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~-~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 229 (253)
T PRK14267 162 RALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKK-EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEV 229 (253)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH-Hhh-CCEEEEEECCHHHHHhhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999985554 554 589999999988 5678999999999988654
No 206
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=2.9e-24 Score=220.04 Aligned_cols=144 Identities=22% Similarity=0.303 Sum_probs=124.1
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchH---------------------------
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW--------------------------- 311 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~--------------------------- 311 (752)
++||+|++| .+++++||||+||||+||++ .|...|.+|.+.+..
T Consensus 42 disf~IP~G-~ivgflGaNGAGKSTtLKmL--------TGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wd 112 (325)
T COG4586 42 DISFEIPKG-EIVGFLGANGAGKSTTLKML--------TGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWD 112 (325)
T ss_pred eeeeecCCC-cEEEEEcCCCCcchhhHHHH--------hCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeee
Confidence 999999999 99999999999999999999 666666665322210
Q ss_pred ------------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhH
Q 004463 312 ------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 366 (752)
Q Consensus 312 ------------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~ 366 (752)
.+.+-..++++..+..++..||-|++ |..++.+++++|.+|+|||||-|||...+
T Consensus 113 lp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq 192 (325)
T COG4586 113 LPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQ 192 (325)
T ss_pred chhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHH
Confidence 11122334667778999999999999 88999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 367 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 367 ~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
.++-..+.++-.+.++||++|||+++ +..+|++++.+..|.+.||
T Consensus 193 ~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~d 238 (325)
T COG4586 193 ANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFD 238 (325)
T ss_pred HHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeec
Confidence 99999888888888999999999976 9999999999999999997
No 207
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.91 E-value=4.3e-24 Score=216.29 Aligned_cols=147 Identities=23% Similarity=0.248 Sum_probs=116.0
Q ss_pred EEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------------------hhhceeec
Q 004463 244 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP 302 (752)
Q Consensus 244 l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------aq~G~~vP 302 (752)
++++|+++.|++..+ ++||++.+| ++++|+||||+|||||||++ |+..+. .+...|+|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAG-EALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence 357899999988766 999999999 99999999999999999999 665321 01123556
Q ss_pred CCCC--CCchH-----------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCC
Q 004463 303 AKNH--PRLPW-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 362 (752)
Q Consensus 303 ~~~~--~~l~~-----------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD 362 (752)
+... ..+++ +..++..+|+.+..++.+.+||+||+ |++++++++.+|+++||||||+|||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 159 (198)
T TIGR01189 80 HLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALD 159 (198)
T ss_pred cCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 5431 11222 22345566777778899999999999 8999999999999999999999999
Q ss_pred hHhHHHHHHHHHHHHhcCCcEEEEEecchh
Q 004463 363 PSEGVALATSILQYLRDRVGLAVVTTHYAD 392 (752)
Q Consensus 363 ~~~~~~L~~all~~l~~~~~tviitTH~~~ 392 (752)
+.....+...+.+ +.+.|.|+|++||+..
T Consensus 160 ~~~~~~l~~~l~~-~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 160 KAGVALLAGLLRA-HLARGGIVLLTTHQDL 188 (198)
T ss_pred HHHHHHHHHHHHH-HHhCCCEEEEEEcccc
Confidence 9999999885554 5566889999999864
No 208
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=5.9e-24 Score=210.52 Aligned_cols=149 Identities=21% Similarity=0.302 Sum_probs=110.5
Q ss_pred EEcccccccCCe--eE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchH-------HH
Q 004463 245 TVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW-------FD 313 (752)
Q Consensus 245 ~~~~ls~~y~~~--~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~-------~d 313 (752)
+++|+++.|++. .+ ++||++.+| ++++|+||||+|||||||++ +|+..|.+|...+.. ..
T Consensus 2 ~~~~l~~~~~~~~~~~l~~i~~~i~~G-~~~~l~G~nGsGKstLl~~i--------~G~~~~~~G~i~~~g~~~~~~~~~ 72 (171)
T cd03228 2 EFKNVSFSYPGRPKPVLKDVSLTIKPG-EKVAIVGPSGSGKSTLLKLL--------LRLYDPTSGEILIDGVDLRDLDLE 72 (171)
T ss_pred EEEEEEEEcCCCCcccccceEEEEcCC-CEEEEECCCCCCHHHHHHHH--------HcCCCCCCCEEEECCEEhhhcCHH
Confidence 578999999864 44 999999999 99999999999999999999 555555544211110 00
Q ss_pred HHHHHcCC--------chhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEE
Q 004463 314 LILADIGD--------HQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLA 384 (752)
Q Consensus 314 ~i~~~ig~--------~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tv 384 (752)
.+...++. ...+..++ ||+||+ |+.++++++.+|++|||||||+|||+.....+.. ++..+.+ +.++
T Consensus 73 ~~~~~i~~~~~~~~~~~~t~~e~l--LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~-~l~~~~~-~~ti 148 (171)
T cd03228 73 SLRKNIAYVPQDPFLFSGTIRENI--LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE-ALRALAK-GKTV 148 (171)
T ss_pred HHHhhEEEEcCCchhccchHHHHh--hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHH-HHHHhcC-CCEE
Confidence 00011110 00111112 999999 8999999999999999999999999999999998 4455554 6899
Q ss_pred EEEecchhHHhhhcccccccCC
Q 004463 385 VVTTHYADLSCLKDKDTRFENA 406 (752)
Q Consensus 385 iitTH~~~l~~~a~~~~~i~~g 406 (752)
|++||+.+....|++.+.+.+|
T Consensus 149 i~~sh~~~~~~~~d~~~~l~~g 170 (171)
T cd03228 149 IVIAHRLSTIRDADRIIVLDDG 170 (171)
T ss_pred EEEecCHHHHHhCCEEEEEcCC
Confidence 9999998855558888887765
No 209
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.91 E-value=2.2e-24 Score=218.96 Aligned_cols=157 Identities=20% Similarity=0.228 Sum_probs=118.1
Q ss_pred EEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhh--hhh-------------------hh-hce
Q 004463 245 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SLM-------------------SK-AGL 299 (752)
Q Consensus 245 ~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli--~~~-------------------aq-~G~ 299 (752)
.++|++++|++..+ ++||++.+| ++++|+||||+||||||+++ |+. .+- .+ ...
T Consensus 2 ~~~~l~~~~~~~~~l~~is~~i~~G-e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (200)
T cd03217 2 EIKDLHVSVGGKEILKGVNLTIKKG-EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIF 80 (200)
T ss_pred eEEEEEEEeCCEEeeeccceEECCC-cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEE
Confidence 57899999987666 999999999 99999999999999999999 442 110 00 011
Q ss_pred eecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHh
Q 004463 300 YLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR 378 (752)
Q Consensus 300 ~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~ 378 (752)
|+|+... . +..+-..+.+......||+||+ |++++++++.+|+++||||||+|||+.....+...+. .+.
T Consensus 81 ~v~q~~~-~-------~~~~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~-~~~ 151 (200)
T cd03217 81 LAFQYPP-E-------IPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVIN-KLR 151 (200)
T ss_pred EeecChh-h-------ccCccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH-HHH
Confidence 2332210 0 0000011222333468999999 8999999999999999999999999999999988554 466
Q ss_pred cCCcEEEEEecchhHHh--hhcccccccCCceeec
Q 004463 379 DRVGLAVVTTHYADLSC--LKDKDTRFENAATEFS 411 (752)
Q Consensus 379 ~~~~tviitTH~~~l~~--~a~~~~~i~~g~v~~~ 411 (752)
+.+.|+|++||+++... +|++++.+.+|.+...
T Consensus 152 ~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~ 186 (200)
T cd03217 152 EEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKS 186 (200)
T ss_pred HCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEE
Confidence 66889999999998665 7999999999987654
No 210
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.2e-24 Score=225.16 Aligned_cols=169 Identities=17% Similarity=0.211 Sum_probs=131.5
Q ss_pred CCCeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-----h-----------------
Q 004463 240 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M----------------- 294 (752)
Q Consensus 240 g~~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-----~----------------- 294 (752)
...+|+++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+ .
T Consensus 16 ~~~~l~~~nl~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 16 TEIKMRARDVSVFYGEKQALFDVDLDIPEK-TVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CCceEEEEeEEEEECCEEEEEEEEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 3458999999999988665 999999999 99999999999999999999 77642 0
Q ss_pred ----hhhceeecCCCCC-CchHHHH-----------------------HHHHcCCch----hhhcCcccchHHHH-HHHH
Q 004463 295 ----SKAGLYLPAKNHP-RLPWFDL-----------------------ILADIGDHQ----SLEQNLSTFSGHIS-RIVD 341 (752)
Q Consensus 295 ----aq~G~~vP~~~~~-~l~~~d~-----------------------i~~~ig~~~----~i~~~~stlSgg~k-rl~~ 341 (752)
.+...|+|+.... ..+++++ ++..+|+.. ..++.+.+||+||+ |+++
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 174 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCI 174 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHH
Confidence 0112356655311 1122222 233445532 35678899999999 8999
Q ss_pred HHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 342 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 342 i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+++++.+|++|||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 175 aral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~ 243 (267)
T PRK14235 175 ARAIAVSPEVILMDEPCSALDPIATAKVEE-LIDELRQ-NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEV 243 (267)
T ss_pred HHHHHcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHhc-CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999988 4455555 689999999988 4578999999999988644
No 211
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=5.7e-24 Score=221.21 Aligned_cols=166 Identities=23% Similarity=0.240 Sum_probs=130.5
Q ss_pred EEcccccccCCeeE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh-----------------hhceeecCCC
Q 004463 245 TVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-----------------KAGLYLPAKN 305 (752)
Q Consensus 245 ~~~~ls~~y~~~~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a-----------------q~G~~vP~~~ 305 (752)
.++|+++.|++..+ ++||++.+| ++++|+||||+||||||+++ |+..+.+ +.-.++|+..
T Consensus 2 ~~~~l~~~~~~~~l~~is~~i~~G-e~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~ 80 (235)
T cd03299 2 KVENLSKDWKEFKLKNVSLEVERG-DYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNY 80 (235)
T ss_pred eeEeEEEEeCCceeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecC
Confidence 57899999976544 999999999 99999999999999999999 6554311 1123555543
Q ss_pred CC--CchH---------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCC
Q 004463 306 HP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 361 (752)
Q Consensus 306 ~~--~l~~---------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~gl 361 (752)
.. .+++ +..++..+|+...+++.+.+||+||+ |++++++++.+|+++||||||+|+
T Consensus 81 ~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gL 160 (235)
T cd03299 81 ALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSAL 160 (235)
T ss_pred ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccC
Confidence 11 1111 12335567777788899999999999 899999999999999999999999
Q ss_pred ChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 362 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 362 D~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
|+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 161 D~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~ 211 (235)
T cd03299 161 DVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQV 211 (235)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999998555433334889999999988 4668999999999988644
No 212
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=6e-24 Score=231.49 Aligned_cols=169 Identities=15% Similarity=0.114 Sum_probs=133.3
Q ss_pred CeEEEcccccccCC----------ee-E-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh--------------
Q 004463 242 SEMTVGSLSKGISD----------FP-V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------- 294 (752)
Q Consensus 242 ~~l~~~~ls~~y~~----------~~-v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------- 294 (752)
.+|+++||++.|+. .. + ++||+|.+| ++++|+||||||||||+++| |++.+.
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~G-e~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERG-KTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCC-CEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 47889999999962 23 3 999999999 99999999999999999999 665321
Q ss_pred --------hhhceeecCCCC----CCchH----------------------HHHHHHHcCCc-hhhhcCcccchHHHH-H
Q 004463 295 --------SKAGLYLPAKNH----PRLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-R 338 (752)
Q Consensus 295 --------aq~G~~vP~~~~----~~l~~----------------------~d~i~~~ig~~-~~i~~~~stlSgg~k-r 338 (752)
.+...++|++.. ..+.+ +..++..+|+. +..++.+.+|||||+ |
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 111246776641 11111 23346667775 467889999999999 8
Q ss_pred HHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhcccccccCCceeec
Q 004463 339 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 411 (752)
Q Consensus 339 l~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~-~~a~~~~~i~~g~v~~~ 411 (752)
++++++++.+|+|||+||||++||+.....+...+.+...+.|.|+|++|||+.+. .+|+++..|.+|.+...
T Consensus 163 v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~ 236 (327)
T PRK11308 163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEK 236 (327)
T ss_pred HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999955543344589999999999865 58999999999988654
No 213
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.3e-24 Score=245.68 Aligned_cols=166 Identities=17% Similarity=0.172 Sum_probs=133.5
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh--------------------hhhce
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL 299 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------------aq~G~ 299 (752)
|++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+. .+.-.
T Consensus 4 ~l~~~~l~~~~~~~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 4 YLSFDGIGKTFPGVKALDDISFDCRAG-QVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred eEEEeeeEEEECCEEEEeeeeEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 7889999999987665 999999999 99999999999999999999 665321 11123
Q ss_pred eecCCCC--CCchHH------------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEE
Q 004463 300 YLPAKNH--PRLPWF------------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 352 (752)
Q Consensus 300 ~vP~~~~--~~l~~~------------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~Ll 352 (752)
|+|+... ..+++. ..++..+|+....++.+++|||||+ |++++++++.+|++|
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ll 162 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVI 162 (501)
T ss_pred EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 6666531 112222 2345556666667888999999999 899999999999999
Q ss_pred EEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 004463 353 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 410 (752)
Q Consensus 353 LLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~ 410 (752)
||||||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+|++++.+.+|++..
T Consensus 163 lLDEPt~~LD~~~~~~l~~-~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 163 AFDEPTSSLSAREIEQLFR-VIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred EEcCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999988 55556667899999999988 557899999999998754
No 214
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.91 E-value=6.7e-24 Score=231.39 Aligned_cols=168 Identities=16% Similarity=0.160 Sum_probs=132.5
Q ss_pred CeEEEcccccccCC-------------eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------
Q 004463 242 SEMTVGSLSKGISD-------------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------- 294 (752)
Q Consensus 242 ~~l~~~~ls~~y~~-------------~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~----------- 294 (752)
.+|+++||++.|+. ..+ ++||+|.+| ++++|+||||||||||+|+| |++.+-
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~G-e~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEG-ETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 47889999999962 223 999999999 99999999999999999999 665320
Q ss_pred -----------hhhceeecCCC----CCCchHHHH-----------------------HHHHcCCc-hhhhcCcccchHH
Q 004463 295 -----------SKAGLYLPAKN----HPRLPWFDL-----------------------ILADIGDH-QSLEQNLSTFSGH 335 (752)
Q Consensus 295 -----------aq~G~~vP~~~----~~~l~~~d~-----------------------i~~~ig~~-~~i~~~~stlSgg 335 (752)
.....|+|++. +..+++.++ ++..+|+. +..++.+..||||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG 165 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG 165 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHH
Confidence 11234677764 112333332 34456663 4568899999999
Q ss_pred HH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchhHH-hhhcccccccCCceeec
Q 004463 336 IS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 411 (752)
Q Consensus 336 ~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~l~-~~a~~~~~i~~g~v~~~ 411 (752)
|+ |++++++++.+|+|||+||||+|||+.....+.. ++..+.+ .+.|+|++|||+++. .+|+++..+.+|.+...
T Consensus 166 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~-lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~ 243 (331)
T PRK15079 166 QCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVN-LLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVEL 243 (331)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99 8999999999999999999999999999999998 4555554 589999999999855 58999999999988653
No 215
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.1e-23 Score=221.10 Aligned_cols=167 Identities=16% Similarity=0.254 Sum_probs=129.9
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhh--h--------------h--------
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--L--------------M-------- 294 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~--~--------------~-------- 294 (752)
+.++++|+++.|++..+ ++||++.+| ++++|+|||||||||||++| |++. + .
T Consensus 3 ~~l~~~nl~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 3 NKVKLEQLNVHFGKNHAVKDVSMDFPEN-SVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred cEEEEEEEEEEeCCeeEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 56889999999987665 999999999 99999999999999999999 7753 1 0
Q ss_pred --hhhceeecCCCC--CCchHHHH----------------------HHHHcCCc----hhhhcCcccchHHHH-HHHHHH
Q 004463 295 --SKAGLYLPAKNH--PRLPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDIL 343 (752)
Q Consensus 295 --aq~G~~vP~~~~--~~l~~~d~----------------------i~~~ig~~----~~i~~~~stlSgg~k-rl~~i~ 343 (752)
.+...|+|+... ...++.++ ++..+++. +..++.+.+||+||+ |+++++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar 161 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIAR 161 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHH
Confidence 011245666531 11222222 23344542 245677899999999 899999
Q ss_pred HccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 344 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 344 ~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
+++.+|++|||||||+|+|+.....+.. +++.+.+ +.|+|++||+.+. ..+|++++.+.+|++...
T Consensus 162 al~~~p~llllDEP~~gLD~~~~~~l~~-~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14256 162 TIAVKPEVILMDEPASALDPISTLKIEE-LIEELKE-KYTIIIVTHNMQQAARVSDYTAFFYMGDLVEC 228 (252)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHh-CCcEEEEECCHHHHHhhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999988 4555655 5799999999884 579999999999987644
No 216
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.91 E-value=6.2e-24 Score=216.00 Aligned_cols=161 Identities=19% Similarity=0.170 Sum_probs=120.6
Q ss_pred EEEcccccccCCe-----eE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------hhhceeecCCCC-C
Q 004463 244 MTVGSLSKGISDF-----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------SKAGLYLPAKNH-P 307 (752)
Q Consensus 244 l~~~~ls~~y~~~-----~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------aq~G~~vP~~~~-~ 307 (752)
++++||++.|++. .+ ++||++++| ++++|+|||||||||||++| |+..+. .++ .|+|+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G-~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i-~~~~q~~~l~ 78 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKG-ELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSI-AYVSQEPWIQ 78 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCC-CEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEE-EEEecCchhc
Confidence 3578999999763 34 999999999 99999999999999999999 554432 111 35555531 1
Q ss_pred CchHHHHH--------------HHHcCCch-----------hhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCC
Q 004463 308 RLPWFDLI--------------LADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 361 (752)
Q Consensus 308 ~l~~~d~i--------------~~~ig~~~-----------~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~gl 361 (752)
..++.+++ +..++..+ .+......||+||+ |++++++++.+|+++||||||+||
T Consensus 79 ~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~L 158 (204)
T cd03250 79 NGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAV 158 (204)
T ss_pred cCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 11222222 22223222 23455689999999 899999999999999999999999
Q ss_pred ChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCC
Q 004463 362 DPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENA 406 (752)
Q Consensus 362 D~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g 406 (752)
|+.....+...++..+.+.+.|+|++||+.+....|++++.+.+|
T Consensus 159 D~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G 203 (204)
T cd03250 159 DAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNG 203 (204)
T ss_pred CHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCC
Confidence 999998888766665655588999999998865558888877766
No 217
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.91 E-value=4.7e-24 Score=221.92 Aligned_cols=164 Identities=15% Similarity=0.108 Sum_probs=122.5
Q ss_pred EEcccccccCC---eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhhce
Q 004463 245 TVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 299 (752)
Q Consensus 245 ~~~~ls~~y~~---~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~G~ 299 (752)
+++|+++.|++ .++ ++||++.+| ++++|+|||||||||||++| |++.+. .+...
T Consensus 2 ~i~~l~~~~~~~~~~~~l~~i~~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 2 EFKNVSFRYPSRPDVPILKGLSLTIPPG-KTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred eEEEEEEecCCCCCccceeceEEEecCC-CEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 57899999964 233 899999999 99999999999999999999 554321 11123
Q ss_pred eecCCCC-CCchHHHHH---------------HHHcC-----------CchhhhcCcccchHHHH-HHHHHHHccCCCcE
Q 004463 300 YLPAKNH-PRLPWFDLI---------------LADIG-----------DHQSLEQNLSTFSGHIS-RIVDILELVSRESL 351 (752)
Q Consensus 300 ~vP~~~~-~~l~~~d~i---------------~~~ig-----------~~~~i~~~~stlSgg~k-rl~~i~~la~~~~L 351 (752)
|+|+... ...++.+++ +...+ ........+..||+||+ |+.++++++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 5555431 011222222 11112 22234456789999999 89999999999999
Q ss_pred EEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 352 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 352 lLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
+||||||+|||+.....+.. ++..+. .+.++|++||+.+...+|++++.+.+|.+..+
T Consensus 161 lllDEP~~gLD~~~~~~l~~-~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~ 218 (238)
T cd03249 161 LLLDEATSALDAESEKLVQE-ALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQ 218 (238)
T ss_pred EEEeCccccCCHHHHHHHHH-HHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEe
Confidence 99999999999999999998 444555 68899999999886668999999999987654
No 218
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.7e-24 Score=213.17 Aligned_cols=167 Identities=20% Similarity=0.225 Sum_probs=133.2
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------------------hhhhcee
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLY 300 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------~aq~G~~ 300 (752)
||+.+|||++..++.+ +++|++.+| ++++|+||||+|||||||.+ |-+.+ ||+.-..
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pG-ev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPG-EVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCC-cEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 6788999999988777 999999999 99999999999999999999 33221 2333233
Q ss_pred ecCCCCCCch-------------------------HHHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccC------C
Q 004463 301 LPAKNHPRLP-------------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS------R 348 (752)
Q Consensus 301 vP~~~~~~l~-------------------------~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~------~ 348 (752)
.|+.....++ +.++.++..+......+...+||||++ |+.+++.++. .
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~ 159 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPS 159 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCC
Confidence 3333221121 134567777778888899999999998 8888866542 3
Q ss_pred CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhcccccccCCceeec
Q 004463 349 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC-LKDKDTRFENAATEFS 411 (752)
Q Consensus 349 ~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~-~a~~~~~i~~g~v~~~ 411 (752)
+..|+|||||+.||+.....+.. +.+.|...|+.|+++-||+++.. |||+++.+.+|++..+
T Consensus 160 ~r~L~LDEPtsaLDi~HQ~~tl~-laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~ 222 (259)
T COG4559 160 GRWLFLDEPTSALDIAHQHHTLR-LARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIAS 222 (259)
T ss_pred CceEEecCCccccchHHHHHHHH-HHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeec
Confidence 45999999999999999999998 77888888999999999999765 9999999999998764
No 219
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1e-23 Score=212.73 Aligned_cols=158 Identities=20% Similarity=0.228 Sum_probs=121.0
Q ss_pred eEEEcccccccCC----eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh--h---------------hhhc
Q 004463 243 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--M---------------SKAG 298 (752)
Q Consensus 243 ~l~~~~ls~~y~~----~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~--~---------------aq~G 298 (752)
+++++|+++.|++ .++ ++||++.+| ++++|+||||+|||||||++ |+..+ . .+..
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i 81 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPG-TLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRST 81 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhce
Confidence 5789999999974 444 999999999 99999999999999999999 54311 0 0112
Q ss_pred eeecCCCC--CCchHHHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHH
Q 004463 299 LYLPAKNH--PRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ 375 (752)
Q Consensus 299 ~~vP~~~~--~~l~~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~ 375 (752)
.|+|+... ..+++.+++.... . ...||+||+ |++++++++.+|+++||||||+|+|+.....+.. ++.
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~----~----~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~-~l~ 152 (192)
T cd03232 82 GYVEQQDVHSPNLTVREALRFSA----L----LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVR-FLK 152 (192)
T ss_pred EEecccCccccCCcHHHHHHHHH----H----HhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHH-HHH
Confidence 24454321 1234444442110 0 118999999 8999999999999999999999999999999988 555
Q ss_pred HHhcCCcEEEEEecchh--HHhhhcccccccC-Cceee
Q 004463 376 YLRDRVGLAVVTTHYAD--LSCLKDKDTRFEN-AATEF 410 (752)
Q Consensus 376 ~l~~~~~tviitTH~~~--l~~~a~~~~~i~~-g~v~~ 410 (752)
.+.+.+.|+|++||+.+ +..+|++++.+.+ |.+.+
T Consensus 153 ~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~ 190 (192)
T cd03232 153 KLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVY 190 (192)
T ss_pred HHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEe
Confidence 56666889999999986 3678999999988 87765
No 220
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=7.2e-24 Score=221.85 Aligned_cols=166 Identities=17% Similarity=0.162 Sum_probs=130.0
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh----------------------hhhh
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------MSKA 297 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~----------------------~aq~ 297 (752)
+++++||++.|++..+ ++||++.+| ++++|+||||+|||||||++ |++.. ..+.
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQN-KITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 5678999999987665 999999999 99999999999999999999 76521 0111
Q ss_pred ceeecCCCCC-CchHH-----------------------HHHHHHcCCc----hhhhcCcccchHHHH-HHHHHHHccCC
Q 004463 298 GLYLPAKNHP-RLPWF-----------------------DLILADIGDH----QSLEQNLSTFSGHIS-RIVDILELVSR 348 (752)
Q Consensus 298 G~~vP~~~~~-~l~~~-----------------------d~i~~~ig~~----~~i~~~~stlSgg~k-rl~~i~~la~~ 348 (752)
..|+|+.... ..+++ ..++..+++. +..++....||+||+ |++++++++.+
T Consensus 81 i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 160 (246)
T PRK14269 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK 160 (246)
T ss_pred EEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 2466665311 01122 2334555653 345678899999999 89999999999
Q ss_pred CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 349 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 349 ~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
|+++||||||+|||+.....+...+.+ +.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 161 p~lllLDEP~~~LD~~~~~~l~~~l~~-~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 222 (246)
T PRK14269 161 PKLLLLDEPTSALDPISSGVIEELLKE-LSH-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEF 222 (246)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHH-HhC-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEE
Confidence 999999999999999999999885544 554 789999999988 5679999999999988654
No 221
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.3e-23 Score=220.35 Aligned_cols=166 Identities=17% Similarity=0.173 Sum_probs=129.5
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-----h--------------------
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M-------------------- 294 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-----~-------------------- 294 (752)
|++++||++.|++.++ ++||++.+| ++++|+||||+||||||++| |+..+ .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKN-QITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCC-CEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 7889999999987665 999999999 99999999999999999999 66531 0
Q ss_pred -hhhceeecCCCC-CCchHHHHH----------------------HHHcCCc----hhhhcCcccchHHHH-HHHHHHHc
Q 004463 295 -SKAGLYLPAKNH-PRLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 345 (752)
Q Consensus 295 -aq~G~~vP~~~~-~~l~~~d~i----------------------~~~ig~~----~~i~~~~stlSgg~k-rl~~i~~l 345 (752)
.+...|+|+... ...++.+++ +..++.. ...++.+.+||+||+ |+++++++
T Consensus 82 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al 161 (250)
T PRK14262 82 YRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARAL 161 (250)
T ss_pred hhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHH
Confidence 112345565531 112322222 2223432 235778899999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 346 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 346 a~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+.+|+++||||||+|||+.....+...+.+ +.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~-~~~-~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~ 226 (250)
T PRK14262 162 AVEPEVILLDEPTSALDPIATQRIEKLLEE-LSE-NYTIVIVTHNIGQAIRIADYIAFMYRGELIEY 226 (250)
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHH-Hhc-CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999885554 554 689999999988 6779999999999988654
No 222
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.91 E-value=8.9e-24 Score=221.67 Aligned_cols=168 Identities=20% Similarity=0.263 Sum_probs=128.5
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhh--hhh-------------------hhh
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SLM-------------------SKA 297 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli--~~~-------------------aq~ 297 (752)
.|++++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |+. .+. .+.
T Consensus 6 ~~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 6 PILEIKNLHASVNENEILKGLNLSINKG-EIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred ceEEEEeEEEEeCCEEeeecceeEEcCC-cEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 47899999999987655 999999999 99999999999999999999 752 210 011
Q ss_pred c-eeecCCCC--CCchH----------------------------HHHHHHHcCCc-hhhhcCcc-cchHHHH-HHHHHH
Q 004463 298 G-LYLPAKNH--PRLPW----------------------------FDLILADIGDH-QSLEQNLS-TFSGHIS-RIVDIL 343 (752)
Q Consensus 298 G-~~vP~~~~--~~l~~----------------------------~d~i~~~ig~~-~~i~~~~s-tlSgg~k-rl~~i~ 343 (752)
+ .++|+... ..++. +..++..+|+. ..+++.+. .|||||+ |+++++
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~ 164 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQ 164 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHH
Confidence 2 24444421 00011 12334555665 34567776 5999999 899999
Q ss_pred HccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHh-h-hcccccccCCceeec
Q 004463 344 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC-L-KDKDTRFENAATEFS 411 (752)
Q Consensus 344 ~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~-~-a~~~~~i~~g~v~~~ 411 (752)
+++.+|+++||||||+|||+.....+.. ++..+.+.+.|+|++||+.++.. + |++++.+.+|++...
T Consensus 165 al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 165 MALLDSELAILDETDSGLDIDALKIIAE-GINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe
Confidence 9999999999999999999999999998 44456666889999999988654 5 788888999988654
No 223
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.91 E-value=8.3e-24 Score=244.40 Aligned_cols=166 Identities=20% Similarity=0.224 Sum_probs=131.2
Q ss_pred EEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhh--hh------hh-----------------
Q 004463 244 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SL------MS----------------- 295 (752)
Q Consensus 244 l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli--~~------~a----------------- 295 (752)
|+++|++++|+++.+ ++||++.+| ++++|+||||||||||||+| |++ .+ ..
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEG-EVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 357899999987665 999999999 99999999999999999999 775 11 00
Q ss_pred -----------------------------hhceeecCCC---CCCchHH---------------------HHHHHHcCCc
Q 004463 296 -----------------------------KAGLYLPAKN---HPRLPWF---------------------DLILADIGDH 322 (752)
Q Consensus 296 -----------------------------q~G~~vP~~~---~~~l~~~---------------------d~i~~~ig~~ 322 (752)
+...++|+.. ...+++. ..++..+|+.
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 0113556641 1112222 2345667777
Q ss_pred hhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhccc
Q 004463 323 QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKD 400 (752)
Q Consensus 323 ~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~ 400 (752)
+..++.+++|||||+ |++++++++.+|++|||||||+|||+.....+...+.+...+.|.|||++||+.+ +..+|+++
T Consensus 160 ~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i 239 (520)
T TIGR03269 160 HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKA 239 (520)
T ss_pred hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEE
Confidence 777899999999999 8999999999999999999999999999999998554443455889999999988 55699999
Q ss_pred ccccCCceee
Q 004463 401 TRFENAATEF 410 (752)
Q Consensus 401 ~~i~~g~v~~ 410 (752)
+.+.+|.+..
T Consensus 240 ~~l~~G~i~~ 249 (520)
T TIGR03269 240 IWLENGEIKE 249 (520)
T ss_pred EEEeCCEEee
Confidence 9999987654
No 224
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.4e-23 Score=219.97 Aligned_cols=167 Identities=23% Similarity=0.279 Sum_probs=129.4
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------------------------
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------ 294 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------------ 294 (752)
+++.++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |+..+.
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 2 GKISVKDLDLFYGDFQALKKINLDIEEN-QVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred CeEEEEEEEEEECCceeeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 46889999999987655 999999999 99999999999999999999 654310
Q ss_pred --hhhceeecCCCC-CCchHHHHHH----------------------HHcCCc----hhhhcCcccchHHHH-HHHHHHH
Q 004463 295 --SKAGLYLPAKNH-PRLPWFDLIL----------------------ADIGDH----QSLEQNLSTFSGHIS-RIVDILE 344 (752)
Q Consensus 295 --aq~G~~vP~~~~-~~l~~~d~i~----------------------~~ig~~----~~i~~~~stlSgg~k-rl~~i~~ 344 (752)
.+...|+|+... ...++++++. ..++.. ...++.+.+||+||+ |++++++
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 160 (250)
T PRK14240 81 QLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARA 160 (250)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 011245666531 1123333331 222321 234677899999999 8999999
Q ss_pred ccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 345 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 345 la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
++.+|+++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus 161 l~~~p~llllDEP~~~LD~~~~~~l~~~l-~~~~~-~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~ 226 (250)
T PRK14240 161 LAVEPEVLLMDEPTSALDPISTLKIEELI-QELKK-DYTIVIVTHNMQQASRISDKTAFFLNGEIVEF 226 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHhc-CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEe
Confidence 99999999999999999999999998855 44554 789999999988 5678999999999988654
No 225
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.91 E-value=9.7e-24 Score=213.30 Aligned_cols=158 Identities=25% Similarity=0.328 Sum_probs=120.2
Q ss_pred eEEEcccccccCC------eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhh--hhhh----------------
Q 004463 243 EMTVGSLSKGISD------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SLMS---------------- 295 (752)
Q Consensus 243 ~l~~~~ls~~y~~------~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli--~~~a---------------- 295 (752)
.++++||++.|++ .++ ++||++.+| ++++|+||||+|||||||+| |+. .+..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~G-e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~ 81 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPG-ELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFR 81 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhh
Confidence 3678999999975 444 999999999 99999999999999999999 555 3210
Q ss_pred hhceeecCCCC--CCchHHHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHH
Q 004463 296 KAGLYLPAKNH--PRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATS 372 (752)
Q Consensus 296 q~G~~vP~~~~--~~l~~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~a 372 (752)
....++|+... ..+++.+++... ....+||+||+ |+.++++++.+|+++||||||+|||+.....+..
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~~i~~~--------~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~- 152 (194)
T cd03213 82 KIIGYVPQDDILHPTLTVRETLMFA--------AKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMS- 152 (194)
T ss_pred heEEEccCcccCCCCCcHHHHHHHH--------HHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH-
Confidence 11123444321 123334433211 01128999999 8999999999999999999999999999999988
Q ss_pred HHHHHhcCCcEEEEEecchh--HHhhhcccccccCCceee
Q 004463 373 ILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFENAATEF 410 (752)
Q Consensus 373 ll~~l~~~~~tviitTH~~~--l~~~a~~~~~i~~g~v~~ 410 (752)
++..+.+++.|+|++||+.+ +..+|+++..+.+|++..
T Consensus 153 ~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~ 192 (194)
T cd03213 153 LLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIY 192 (194)
T ss_pred HHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEe
Confidence 45556666889999999974 567899999999988753
No 226
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.91 E-value=7.7e-24 Score=217.73 Aligned_cols=166 Identities=16% Similarity=0.140 Sum_probs=125.9
Q ss_pred eEEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhhc
Q 004463 243 EMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 298 (752)
Q Consensus 243 ~l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~G 298 (752)
.++++|+++.|++ +++ ++||++.+| ++++|+|||||||||||+++ |+..+. .+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPG-EKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 3678999999964 244 999999999 99999999999999999999 554321 1122
Q ss_pred eeecCCCCC-CchHHH--------------HHHHHcCCchhh-----------hcCcccchHHHH-HHHHHHHccCCCcE
Q 004463 299 LYLPAKNHP-RLPWFD--------------LILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRESL 351 (752)
Q Consensus 299 ~~vP~~~~~-~l~~~d--------------~i~~~ig~~~~i-----------~~~~stlSgg~k-rl~~i~~la~~~~L 351 (752)
.|+|+.... ..++.+ .++..+++.+.+ ....+.||+||+ |+.++++++.+|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 355655310 112222 223444554444 357899999999 89999999999999
Q ss_pred EEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 352 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 352 lLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
+||||||+|||+.....+...+ ..+.+ +.|+|++||+.+....|++++.+.+|++...
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l-~~~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~ 218 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTI-REAFK-DCTVLTIAHRLDTIIDSDRILVLDKGRVVEF 218 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHH-HHhcC-CCEEEEEeCCHHHHhhCCEEEEEECCeEEec
Confidence 9999999999999999998844 44544 5899999999886667999999999887543
No 227
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.91 E-value=9.8e-24 Score=217.51 Aligned_cols=159 Identities=19% Similarity=0.245 Sum_probs=122.0
Q ss_pred eEEEcccccccCC-------eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------h--h--------
Q 004463 243 EMTVGSLSKGISD-------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------M--S-------- 295 (752)
Q Consensus 243 ~l~~~~ls~~y~~-------~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------~--a-------- 295 (752)
|++++||++.|++ ..+ ++||++.+| ++++|+|||||||||||++| |++.+ . .
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~ 79 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAG-ECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhc
Confidence 5788999999962 234 999999999 99999999999999999999 55432 1 0
Q ss_pred ----------hhceeecCCCCC--CchH---------------------HHHHHHHcCCchh-hhcCcccchHHHH-HHH
Q 004463 296 ----------KAGLYLPAKNHP--RLPW---------------------FDLILADIGDHQS-LEQNLSTFSGHIS-RIV 340 (752)
Q Consensus 296 ----------q~G~~vP~~~~~--~l~~---------------------~d~i~~~ig~~~~-i~~~~stlSgg~k-rl~ 340 (752)
+...|+|+.... .+++ +..++..+|+.+. .++.+..||+||+ |++
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~ 159 (224)
T TIGR02324 80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVN 159 (224)
T ss_pred CHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHH
Confidence 112366665321 1111 1223455666554 4678999999999 899
Q ss_pred HHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhcccccc
Q 004463 341 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRF 403 (752)
Q Consensus 341 ~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~-~~a~~~~~i 403 (752)
++++++.+|+++||||||+|+|+.....+.. ++..+.+.|.|+|++||+.++. .+|++++.+
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 160 IARGFIADYPILLLDEPTASLDAANRQVVVE-LIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 9999999999999999999999999999998 4455666688999999998855 588877654
No 228
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.91 E-value=1e-23 Score=208.00 Aligned_cols=148 Identities=20% Similarity=0.240 Sum_probs=114.4
Q ss_pred EEcccccccCC-eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh--------hhceeecCCCC-CCchH
Q 004463 245 TVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNH-PRLPW 311 (752)
Q Consensus 245 ~~~~ls~~y~~-~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a--------q~G~~vP~~~~-~~l~~ 311 (752)
+++|+++.|++ +.+ ++||++.+| ++++|+|||||||||||+++ |++.+-. +.-.|+|++.. ...++
T Consensus 2 ~~~~~~~~~~~~~~~l~~i~l~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv 80 (166)
T cd03223 2 ELENLSLATPDGRVLLKDLSFEIKPG-DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTL 80 (166)
T ss_pred EEEEEEEEcCCCCeeeecCeEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccH
Confidence 57899999953 444 999999999 99999999999999999999 5544311 11134555431 11233
Q ss_pred HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 004463 312 FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 390 (752)
Q Consensus 312 ~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~ 390 (752)
.+++.. + ....||+||+ |++++++++.+|+++||||||+|+|+.....+...+.+. +.|+|++||+
T Consensus 81 ~~nl~~--~-------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~ 147 (166)
T cd03223 81 REQLIY--P-------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHR 147 (166)
T ss_pred HHHhhc--c-------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCC
Confidence 444321 0 5689999999 899999999999999999999999999999988855443 6899999999
Q ss_pred hhHHhhhcccccccCC
Q 004463 391 ADLSCLKDKDTRFENA 406 (752)
Q Consensus 391 ~~l~~~a~~~~~i~~g 406 (752)
.++..+|++++.+.++
T Consensus 148 ~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 148 PSLWKFHDRVLDLDGE 163 (166)
T ss_pred hhHHhhCCEEEEEcCC
Confidence 8877789988877664
No 229
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.91 E-value=6.2e-24 Score=233.66 Aligned_cols=158 Identities=17% Similarity=0.156 Sum_probs=126.8
Q ss_pred ccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------------hhhceeecCCC
Q 004463 252 GISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGLYLPAKN 305 (752)
Q Consensus 252 ~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------------aq~G~~vP~~~ 305 (752)
.|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+. .+...|+|+..
T Consensus 2 ~~~~~~~l~~vs~~i~~G-ei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 2 KTGGKKGVNDADLAIAKG-EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred ccCCceeEEeeEEEEcCC-CEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 4555444 999999999 99999999999999999999 666421 12234677664
Q ss_pred C--CCchHHH---------------------HHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCC
Q 004463 306 H--PRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 361 (752)
Q Consensus 306 ~--~~l~~~d---------------------~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~gl 361 (752)
. ..+++.+ .++..+|+....++.+++|||||+ |+.++++++.+|++|||||||++|
T Consensus 81 ~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saL 160 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSAL 160 (363)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 2 1123222 346667888889999999999999 899999999999999999999999
Q ss_pred ChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 004463 362 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 410 (752)
Q Consensus 362 D~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~ 410 (752)
||..+..+...+.+...+.+.|+|++||+++ ...+|+++..+.+|.+..
T Consensus 161 D~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~ 210 (363)
T TIGR01186 161 DPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQ 210 (363)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEe
Confidence 9999999999666543445889999999988 567999999999998754
No 230
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.5e-23 Score=219.99 Aligned_cols=168 Identities=20% Similarity=0.240 Sum_probs=129.4
Q ss_pred CCeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhh--hh---------------------
Q 004463 241 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--LM--------------------- 294 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~--~~--------------------- 294 (752)
+.|++++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |+.. +.
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 3 KKIITSSDVHLFYGKFEALKGIDLDFNQN-EITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred cceEEEEeEEEEECCeeEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 458899999999987665 999999999 99999999999999999999 6642 10
Q ss_pred ---hhhceeecCCCC-CCchHHHHH----------------------HHHcCC----chhhhcCcccchHHHH-HHHHHH
Q 004463 295 ---SKAGLYLPAKNH-PRLPWFDLI----------------------LADIGD----HQSLEQNLSTFSGHIS-RIVDIL 343 (752)
Q Consensus 295 ---aq~G~~vP~~~~-~~l~~~d~i----------------------~~~ig~----~~~i~~~~stlSgg~k-rl~~i~ 343 (752)
.+...|+|+... ...++.+++ +..++. .+..++.+.+||+||+ |+++++
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~lar 161 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIAR 161 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHH
Confidence 011235666531 112233222 122222 2345678899999999 899999
Q ss_pred HccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 344 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 344 ~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
+++.+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+.+. ..+|++++.+.+|++..+
T Consensus 162 al~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14255 162 VLAVKPDVILLDEPTSALDPISSTQIENMLL-ELRD-QYTIILVTHSMHQASRISDKTAFFLTGNLIEF 228 (252)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHH-HHHh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999988444 4555 4899999999884 568999999999988654
No 231
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.7e-23 Score=228.43 Aligned_cols=167 Identities=11% Similarity=0.135 Sum_probs=131.3
Q ss_pred eEEEcccccccC----CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh------------------h---
Q 004463 243 EMTVGSLSKGIS----DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------M--- 294 (752)
Q Consensus 243 ~l~~~~ls~~y~----~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------------------~--- 294 (752)
||+++||++.|+ ...+ ++||+|.+| ++++|+||||||||||+++| |+... +
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~G-e~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEG-EIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCC-CEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 678999999993 3334 999999999 99999999999999999999 77631 0
Q ss_pred ------hhhceeecCCCCC----CchH---------------------------HHHHHHHcCCch---hhhcCcccchH
Q 004463 295 ------SKAGLYLPAKNHP----RLPW---------------------------FDLILADIGDHQ---SLEQNLSTFSG 334 (752)
Q Consensus 295 ------aq~G~~vP~~~~~----~l~~---------------------------~d~i~~~ig~~~---~i~~~~stlSg 334 (752)
.+...|+|++... .+++ +..++..+|+.+ ..++.+..|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 0113477776421 1111 122345566653 35788999999
Q ss_pred HHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchhHH-hhhcccccccCCceeec
Q 004463 335 HIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 411 (752)
Q Consensus 335 g~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~l~-~~a~~~~~i~~g~v~~~ 411 (752)
||+ |++++++++.+|+|||+||||+|||+..+..+.. ++..+.+ .|.|+|++|||+++. .+|+++..|.+|++...
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~-lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~ 240 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFR-LLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVET 240 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 999 8999999999999999999999999999999999 4455665 589999999998855 68999999999988654
No 232
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=7.4e-24 Score=220.02 Aligned_cols=164 Identities=15% Similarity=0.144 Sum_probs=122.6
Q ss_pred EEcccccccC-CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhhceee
Q 004463 245 TVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLYL 301 (752)
Q Consensus 245 ~~~~ls~~y~-~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~G~~v 301 (752)
+++|+++.|+ +..+ ++||++.+| ++++|+||||+||||||++| |+..+- .+...|+
T Consensus 2 ~~~~l~~~~~~~~~~l~~i~~~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 2 EFENVTFAYDPGRPVLKDVSFTIPAG-KKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred EEEEEEEEeCCCCceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 5789999995 3434 999999999 99999999999999999999 665321 1112355
Q ss_pred cCCCC-CCchHHHHH---------------HHHcCC-----------chhhhcCcccchHHHH-HHHHHHHccCCCcEEE
Q 004463 302 PAKNH-PRLPWFDLI---------------LADIGD-----------HQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 353 (752)
Q Consensus 302 P~~~~-~~l~~~d~i---------------~~~ig~-----------~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlL 353 (752)
|+... ...++.+++ +...+. ...+++.+.+||+|++ |++++++++.+|++||
T Consensus 81 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~lll 160 (236)
T cd03253 81 PQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILL 160 (236)
T ss_pred CCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 55431 111222222 111122 2223445679999999 8999999999999999
Q ss_pred EeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 354 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 354 LDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
|||||+|||+.....+.. ++..+.+ +.|+|++||+.+....|++.+.+.+|.+...
T Consensus 161 lDEP~~~LD~~~~~~l~~-~l~~~~~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~ 216 (236)
T cd03253 161 LDEATSALDTHTEREIQA-ALRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVER 216 (236)
T ss_pred EeCCcccCCHHHHHHHHH-HHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEee
Confidence 999999999999999998 4455666 8899999999886667999999999987643
No 233
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.2e-23 Score=220.65 Aligned_cols=167 Identities=18% Similarity=0.208 Sum_probs=129.7
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-----h-------------------
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M------------------- 294 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-----~------------------- 294 (752)
.|++++||++.|++..+ ++||++.+| ++++|+||||+||||||++| |+..+ .
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 3 IKMESKNLNLWYGEKQALNDINLPIYEN-KITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred cEEEEEEeEEEECCeeeeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 47889999999987665 999999999 99999999999999999999 76532 0
Q ss_pred --hhhceeecCCCC-CCchHHHH----------------------HHHHcCC----chhhhcCcccchHHHH-HHHHHHH
Q 004463 295 --SKAGLYLPAKNH-PRLPWFDL----------------------ILADIGD----HQSLEQNLSTFSGHIS-RIVDILE 344 (752)
Q Consensus 295 --aq~G~~vP~~~~-~~l~~~d~----------------------i~~~ig~----~~~i~~~~stlSgg~k-rl~~i~~ 344 (752)
.+.-.|+|+... ...+++++ ++..+++ .+..++.+..||+||+ |++++++
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 161 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIART 161 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 011245565531 11222222 2333333 2345778899999999 8999999
Q ss_pred ccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 345 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 345 la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
++.+|+++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 162 l~~~p~llllDEP~~~LD~~~~~~l~~~L-~~~~~-~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~ 227 (251)
T PRK14270 162 IAVKPDVILMDEPTSALDPISTLKIEDLM-VELKK-EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEF 227 (251)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHh-CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEe
Confidence 99999999999999999999999998844 44555 589999999988 5678999999999988654
No 234
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.1e-23 Score=221.97 Aligned_cols=166 Identities=19% Similarity=0.247 Sum_probs=127.4
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh------hh------------------
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------MS------------------ 295 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------~a------------------ 295 (752)
+++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+ -+
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPR-SVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 6789999999987665 999999999 99999999999999999999 77631 00
Q ss_pred --hhceeecCCCC--CCchHHHH----------------------HHHHcCC----chhhhcCcccchHHHH-HHHHHHH
Q 004463 296 --KAGLYLPAKNH--PRLPWFDL----------------------ILADIGD----HQSLEQNLSTFSGHIS-RIVDILE 344 (752)
Q Consensus 296 --q~G~~vP~~~~--~~l~~~d~----------------------i~~~ig~----~~~i~~~~stlSgg~k-rl~~i~~ 344 (752)
+...|+|+... ..++++++ ++..+|+ .+..++.+.+||+||+ |++++++
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 162 (258)
T PRK14241 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARA 162 (258)
T ss_pred HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 11234555431 11233322 2333444 2456788899999999 8999999
Q ss_pred ccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhccccccc------CCceeec
Q 004463 345 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE------NAATEFS 411 (752)
Q Consensus 345 la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~------~g~v~~~ 411 (752)
++.+|+++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+ +..+|++++.+. +|++...
T Consensus 163 l~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~-~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 163 IAVEPDVLLMDEPCSALDPISTLAIEDLI-NELKQ-DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 99999999999999999999999998844 44554 589999999987 567999998886 6766543
No 235
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1e-23 Score=242.78 Aligned_cols=170 Identities=14% Similarity=0.131 Sum_probs=135.0
Q ss_pred CCCeEEEcccccccC---CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-h------------------
Q 004463 240 ENSEMTVGSLSKGIS---DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-M------------------ 294 (752)
Q Consensus 240 g~~~l~~~~ls~~y~---~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-~------------------ 294 (752)
+..|++++||++.|+ +..+ ++||++.+| ++++|+||||||||||||+| |++.+ .
T Consensus 256 ~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~G-e~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~ 334 (506)
T PRK13549 256 GEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRG-EILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQ 334 (506)
T ss_pred CCceEEEecCccccccccccccccceeeEEcCC-cEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHH
Confidence 345899999999994 3344 899999999 99999999999999999999 77641 0
Q ss_pred --hhhceeecCCC-----CCCchH--------------------------HHHHHHHcCCc-hhhhcCcccchHHHH-HH
Q 004463 295 --SKAGLYLPAKN-----HPRLPW--------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RI 339 (752)
Q Consensus 295 --aq~G~~vP~~~-----~~~l~~--------------------------~d~i~~~ig~~-~~i~~~~stlSgg~k-rl 339 (752)
.+.-.|+|+.. ...+++ ++.++..+++. +..++.+.+|||||+ |+
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv 414 (506)
T PRK13549 335 AIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKA 414 (506)
T ss_pred HHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHH
Confidence 01124666652 111121 22345566775 467889999999999 89
Q ss_pred HHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 340 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 340 ~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
.++++++.+|++|||||||+|||+.....+.. ++..+.+.|.|||++|||++ +..+|++++.+.+|++.++
T Consensus 415 ~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~ 486 (506)
T PRK13549 415 VLAKCLLLNPKILILDEPTRGIDVGAKYEIYK-LINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGD 486 (506)
T ss_pred HHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHH-HHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999988 55567777899999999987 5679999999999988654
No 236
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.2e-23 Score=220.61 Aligned_cols=167 Identities=16% Similarity=0.210 Sum_probs=129.3
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhh--h----h------------------
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--L----M------------------ 294 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~--~----~------------------ 294 (752)
.|++++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |+.. + -
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 4 PILQVSDLSVYYNKKKALNSVSLDFYPN-EITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 37889999999987665 999999999 99999999999999999999 6632 1 0
Q ss_pred --hhhceeecCCCCC-CchHHHHH----------------------HHHcCC----chhhhcCcccchHHHH-HHHHHHH
Q 004463 295 --SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGD----HQSLEQNLSTFSGHIS-RIVDILE 344 (752)
Q Consensus 295 --aq~G~~vP~~~~~-~l~~~d~i----------------------~~~ig~----~~~i~~~~stlSgg~k-rl~~i~~ 344 (752)
.+...|+|+.... ..++.+++ +..++. .+..++.+.+||+||+ |++++++
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARV 162 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHH
Confidence 1112356665321 12333333 222332 1235678899999999 8999999
Q ss_pred ccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 345 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 345 la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
++.+|+++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 163 l~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14239 163 LATSPKIILLDEPTSALDPISAGKIEETL-LGLKD-DYTMLLVTRSMQQASRISDRTGFFLDGDLIEY 228 (252)
T ss_pred HhcCCCEEEEcCCccccCHHHHHHHHHHH-HHHhh-CCeEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999998844 44554 589999999987 5679999999999988654
No 237
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.90 E-value=8e-24 Score=219.45 Aligned_cols=152 Identities=18% Similarity=0.236 Sum_probs=119.4
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh--------------hhceeecCCCC--CCchHHH--------
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------------KAGLYLPAKNH--PRLPWFD-------- 313 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a--------------q~G~~vP~~~~--~~l~~~d-------- 313 (752)
++||++.+| ++++|+||||||||||||++ |++.+-. ....++|+... ..+++.+
T Consensus 3 ~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~ 81 (230)
T TIGR01184 3 GVNLTIQQG-EFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDR 81 (230)
T ss_pred ceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHh
Confidence 578999999 99999999999999999999 6654310 00135565531 1122222
Q ss_pred ---------------HHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHH
Q 004463 314 ---------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 377 (752)
Q Consensus 314 ---------------~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l 377 (752)
.++..+|+.+..++.+++|||||+ |+.++++++.+|+++||||||+|||+.....+...+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 161 (230)
T TIGR01184 82 VLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIW 161 (230)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH
Confidence 234556777777889999999999 8999999999999999999999999999999999555544
Q ss_pred hcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 378 RDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 378 ~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
.+.+.|+|++||+++ +..+|++++.+.+|.+...
T Consensus 162 ~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~ 196 (230)
T TIGR01184 162 EEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANI 196 (230)
T ss_pred HhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecc
Confidence 445889999999987 5679999999999988654
No 238
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.90 E-value=1.1e-23 Score=231.96 Aligned_cols=160 Identities=24% Similarity=0.282 Sum_probs=131.2
Q ss_pred CeEEEcccccccCCeeE---eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCC------CCch--
Q 004463 242 SEMTVGSLSKGISDFPV---PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH------PRLP-- 310 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v---~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~------~~l~-- 310 (752)
..+.+.||+|+|.+.+. .++|-++.+ ..++++||||+|||||||++ +|...|..|. ..++
T Consensus 388 pvi~~~nv~F~y~~~~~iy~~l~fgid~~-srvAlVGPNG~GKsTLlKl~--------~gdl~p~~G~vs~~~H~~~~~y 458 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNPMIYKKLNFGIDLD-SRVALVGPNGAGKSTLLKLI--------TGDLQPTIGMVSRHSHNKLPRY 458 (614)
T ss_pred CeEEEeccccCCCCcchhhhhhhcccCcc-cceeEecCCCCchhhhHHHH--------hhccccccccccccccccchhh
Confidence 35668999999987643 889999999 88999999999999999999 4444444331 1222
Q ss_pred -----------------------------HHHHHHHHcCCc-hhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCC
Q 004463 311 -----------------------------WFDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 359 (752)
Q Consensus 311 -----------------------------~~d~i~~~ig~~-~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~ 359 (752)
.+..++.++|+. +....++++||+|++ |+.+++..+..|.||||||||+
T Consensus 459 ~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtn 538 (614)
T KOG0927|consen 459 NQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTN 538 (614)
T ss_pred hhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCc
Confidence 133467777876 666789999999999 8999999999999999999999
Q ss_pred CCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeeccCc
Q 004463 360 GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLET 414 (752)
Q Consensus 360 glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~~~~ 414 (752)
|||+....+++.+|-++ .+++|++|||.. +..+++.++.+.|+.+..+.+.
T Consensus 539 hLDi~tid~laeaiNe~----~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~ 590 (614)
T KOG0927|consen 539 HLDIETIDALAEAINEF----PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGD 590 (614)
T ss_pred CCCchhHHHHHHHHhcc----CCceeeeechhhHHHHHHHHhHhhccCceeecCcc
Confidence 99999999999877766 889999999987 6679999999999988766443
No 239
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.3e-23 Score=222.59 Aligned_cols=168 Identities=18% Similarity=0.230 Sum_probs=131.2
Q ss_pred CCeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-----h------------------
Q 004463 241 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M------------------ 294 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-----~------------------ 294 (752)
..|+.++||+++|+++++ ++||++.+| ++++|+||||||||||||+| |+..+ .
T Consensus 18 ~~~l~~~nl~~~~~~~~il~~vsl~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 18 EIALSTKDLHVYYGKKEAIKGIDMQFEKN-KITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred CeEEEEeeEEEEECCeeeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 457889999999987666 999999999 99999999999999999999 77631 0
Q ss_pred ---hhhceeecCCCCC-CchHHHHH----------------------HHHcCCc----hhhhcCcccchHHHH-HHHHHH
Q 004463 295 ---SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDIL 343 (752)
Q Consensus 295 ---aq~G~~vP~~~~~-~l~~~d~i----------------------~~~ig~~----~~i~~~~stlSgg~k-rl~~i~ 343 (752)
.+...|+|+.... ..++.+++ +..+++. +.+++.+.+||+||+ |+++++
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~lar 176 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIAR 176 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHH
Confidence 1123466665311 11233322 2334432 345778899999999 899999
Q ss_pred HccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 344 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 344 ~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+++.+|+++||||||+|||+.....+...+ ..+.+ +.++|++||+.+ +..+|+++..+.+|++...
T Consensus 177 al~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 243 (267)
T PRK14237 177 AIAVKPDILLMDEPASALDPISTMQLEETM-FELKK-NYTIIIVTHNMQQAARASDYTAFFYLGDLIEY 243 (267)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhc-CCEEEEEecCHHHHHHhcCEEEEEECCEEEEe
Confidence 999999999999999999999999998844 55554 689999999987 5579999999999988654
No 240
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=8.4e-24 Score=244.88 Aligned_cols=161 Identities=16% Similarity=0.167 Sum_probs=126.6
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh---------hhhceeecCCCC--CC
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------SKAGLYLPAKNH--PR 308 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~---------aq~G~~vP~~~~--~~ 308 (752)
||+++||++.|++.++ ++||++.+| ++++|+||||||||||||+| |++.+- ... .|+|+... ..
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~G-e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i-~~~~q~~~~~~~ 78 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGG-NRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERL-GKLRQDQFAFEE 78 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEE-EEEeccCCcCCC
Confidence 5789999999987766 999999999 99999999999999999999 666431 112 25555421 11
Q ss_pred chH-----------------------------------------------------HHHHHHHcCCchhh-hcCcccchH
Q 004463 309 LPW-----------------------------------------------------FDLILADIGDHQSL-EQNLSTFSG 334 (752)
Q Consensus 309 l~~-----------------------------------------------------~d~i~~~ig~~~~i-~~~~stlSg 334 (752)
+++ +..++..+|+.+.. ++.+++|||
T Consensus 79 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg 158 (530)
T PRK15064 79 FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAP 158 (530)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCH
Confidence 111 12334456665433 467899999
Q ss_pred HHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCcee
Q 004463 335 HIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 409 (752)
Q Consensus 335 g~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~ 409 (752)
||+ |++++++++.+|++|||||||+|||+.....+...+. +.+.|||++||+.+ +..+|++++.+.+|++.
T Consensus 159 Gq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~ 231 (530)
T PRK15064 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLN----ERNSTMIIISHDRHFLNSVCTHMADLDYGELR 231 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH----hCCCeEEEEeCCHHHHHhhcceEEEEeCCEEE
Confidence 999 8999999999999999999999999999998877443 35889999999988 56799999999998874
No 241
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.3e-23 Score=220.38 Aligned_cols=166 Identities=19% Similarity=0.254 Sum_probs=128.4
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh------h-------------------
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------M------------------- 294 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------~------------------- 294 (752)
|+.++||++.|++..+ ++||++.+| ++++|+||||+|||||||+| |+... -
T Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 4 IISAKDVHLSYGNYEALHGISLDFEEK-ELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 6789999999987666 899999999 99999999999999999999 77631 0
Q ss_pred -hhhceeecCCCC-CCchHHHH----------------------HHHHcCCc----hhhhcCcccchHHHH-HHHHHHHc
Q 004463 295 -SKAGLYLPAKNH-PRLPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 345 (752)
Q Consensus 295 -aq~G~~vP~~~~-~~l~~~d~----------------------i~~~ig~~----~~i~~~~stlSgg~k-rl~~i~~l 345 (752)
.+...|+|+... ...++.++ ++..+++. ...++.+.+||+||+ |+++++++
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral 162 (251)
T PRK14251 83 LRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARAL 162 (251)
T ss_pred hhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHH
Confidence 011235555431 11122222 23334442 345778899999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 346 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 346 a~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+.+|+++||||||+|||+.....+...+.+ +.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 163 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~-~~~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14251 163 AVRPKVVLLDEPTSALDPISSSEIEETLME-LKH-QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEA 227 (251)
T ss_pred hcCCCEEEecCCCccCCHHHHHHHHHHHHH-HHc-CCeEEEEECCHHHHHhhcCEEEEEECCEEEEe
Confidence 999999999999999999999999885554 544 689999999988 5678999999999988644
No 242
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.4e-23 Score=220.17 Aligned_cols=166 Identities=18% Similarity=0.262 Sum_probs=128.7
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------h------------------
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------S------------------ 295 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------a------------------ 295 (752)
|++++||++.|++..+ ++||++.+| ++++|+||||+|||||||+| |+..+- +
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRG-TVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 6789999999987666 999999999 99999999999999999999 765321 0
Q ss_pred --hhceeecCCCC--CCchHHHHHH----------------------HHcCC----chhhhcCcccchHHHH-HHHHHHH
Q 004463 296 --KAGLYLPAKNH--PRLPWFDLIL----------------------ADIGD----HQSLEQNLSTFSGHIS-RIVDILE 344 (752)
Q Consensus 296 --q~G~~vP~~~~--~~l~~~d~i~----------------------~~ig~----~~~i~~~~stlSgg~k-rl~~i~~ 344 (752)
+...|+|+... ..+++.+++. ..++. .+..++.+++||+||+ |++++++
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARA 162 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHH
Confidence 11235555531 1223333332 11221 1234677899999999 8999999
Q ss_pred ccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 345 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 345 la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
++.+|+++||||||+|+|+.....+.. +++.+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 163 l~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14272 163 LAVEPEILLMDEPTSALDPASTARIED-LMTDLKK-VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEH 228 (252)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999998 5555654 689999999988 5568999999999988654
No 243
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.90 E-value=1.4e-23 Score=241.44 Aligned_cols=167 Identities=17% Similarity=0.200 Sum_probs=131.8
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh---hh-------------------hh
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---MS-------------------KA 297 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~---~a-------------------q~ 297 (752)
+++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+ -+ +.
T Consensus 1 ~l~i~~l~~~~~~~~il~~isl~i~~G-e~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPG-ECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred CEEEEeEEEEeCCeEeecceEEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 3678999999988666 999999999 99999999999999999999 77643 00 11
Q ss_pred ceeecCCCC--CCchHH-------------------------HHHHHHcCCchhh-hcCcccchHHHH-HHHHHHHccCC
Q 004463 298 GLYLPAKNH--PRLPWF-------------------------DLILADIGDHQSL-EQNLSTFSGHIS-RIVDILELVSR 348 (752)
Q Consensus 298 G~~vP~~~~--~~l~~~-------------------------d~i~~~ig~~~~i-~~~~stlSgg~k-rl~~i~~la~~ 348 (752)
-.|+|+... ..++++ +.++..+|+.... ++.+++|||||+ |++++++++.+
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~ 159 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQ 159 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhC
Confidence 236666531 112222 2334455655443 467899999999 89999999999
Q ss_pred CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 349 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 349 ~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
|++|||||||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 160 p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 160 ARLLILDEPSSSLTEKETEILLD-IIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeee
Confidence 99999999999999999999999 55556777889999999987 5679999999999887543
No 244
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.9e-23 Score=222.51 Aligned_cols=169 Identities=20% Similarity=0.269 Sum_probs=131.5
Q ss_pred CCCeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh----------------------
Q 004463 240 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------- 294 (752)
Q Consensus 240 g~~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~---------------------- 294 (752)
-..++.++||+++|++.++ ++||+|.+| ++++|+||||+||||||++| |++.+.
T Consensus 18 ~~~~l~i~nl~~~~~~~~il~~vs~~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 18 AAPAMAAVNLTLGFAGKTVLDQVSMGFPAR-AVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred cCcEEEEeeEEEEECCEEEeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 3457899999999988776 999999999 99999999999999999999 776420
Q ss_pred ---hhhceeecCCCCC-CchHHHH----------------------HHHHcCCc----hhhhcCcccchHHHH-HHHHHH
Q 004463 295 ---SKAGLYLPAKNHP-RLPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDIL 343 (752)
Q Consensus 295 ---aq~G~~vP~~~~~-~l~~~d~----------------------i~~~ig~~----~~i~~~~stlSgg~k-rl~~i~ 343 (752)
.....|+|+.... ..+++++ ++..+++. +.+++.+.+||+||+ |+++++
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAr 176 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLAR 176 (276)
T ss_pred HHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHH
Confidence 0112366665311 1222222 23334443 235677889999999 899999
Q ss_pred HccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 344 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 344 ~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+++.+|+||||||||+|+|+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 177 al~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~-~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~ 243 (276)
T PRK14271 177 TLAVNPEVLLLDEPTSALDPTTTEKIEE-FIRSLAD-RLTVIIVTHNLAQAARISDRAALFFDGRLVEE 243 (276)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999988 5555555 489999999988 5679999999999988654
No 245
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=1.4e-23 Score=211.70 Aligned_cols=168 Identities=25% Similarity=0.341 Sum_probs=138.3
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------------------hhhhc-
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG- 298 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------~aq~G- 298 (752)
.|++++||+..||...+ ++||++++| ++++|+||||+|||||||+| |++.. .++.|
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~G-eiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERG-EIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 47899999999998776 999999999 99999999999999999999 77654 23455
Q ss_pred eeecCCC--CCCchHHHH--------------------HHHHcC-CchhhhcCcccchHHHH-HHHHHHHccCCCcEEEE
Q 004463 299 LYLPAKN--HPRLPWFDL--------------------ILADIG-DHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 354 (752)
Q Consensus 299 ~~vP~~~--~~~l~~~d~--------------------i~~~ig-~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLL 354 (752)
.|||+.. ++.+++-++ +|+.|. +.+..++...+||||++ .++++++++.+|+||||
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLL 160 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLL 160 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEe
Confidence 3777754 234444443 444443 45567788999999999 58888999999999999
Q ss_pred eCCCCCCChHhHHHHHHHHHHHHhcC-CcEEEEEecchhHHh-hhcccccccCCceeec
Q 004463 355 DEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSC-LKDKDTRFENAATEFS 411 (752)
Q Consensus 355 DEp~~glD~~~~~~L~~all~~l~~~-~~tviitTH~~~l~~-~a~~~~~i~~g~v~~~ 411 (752)
|||+.||-|.-...+.. ++..+++. +.||++|.++...+. ++|+.+.+.+|.+.+.
T Consensus 161 DEPs~GLaP~iv~~I~~-~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~ 218 (237)
T COG0410 161 DEPSEGLAPKIVEEIFE-AIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLS 218 (237)
T ss_pred cCCccCcCHHHHHHHHH-HHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEe
Confidence 99999999999999998 55667755 679999999988654 9999999999999886
No 246
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=9e-24 Score=244.65 Aligned_cols=164 Identities=19% Similarity=0.265 Sum_probs=131.6
Q ss_pred CCeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------h-hhceeecCCCC---
Q 004463 241 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S-KAGLYLPAKNH--- 306 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------a-q~G~~vP~~~~--- 306 (752)
+.|++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+. . ..-.|+|+...
T Consensus 317 ~~~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~ 395 (530)
T PRK15064 317 RNALEVENLTKGFDNGPLFKNLNLLLEAG-ERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDF 395 (530)
T ss_pred CceEEEEeeEEeeCCceeecCcEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccC
Confidence 458999999999987665 999999999 99999999999999999999 665431 1 11236666531
Q ss_pred -CCchHH----------------HHHHHHcCCc-hhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHH
Q 004463 307 -PRLPWF----------------DLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV 367 (752)
Q Consensus 307 -~~l~~~----------------d~i~~~ig~~-~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~ 367 (752)
..+++. +.++..+|+. +..++.+++|||||+ |++++++++.+|++|||||||+|||+....
T Consensus 396 ~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~ 475 (530)
T PRK15064 396 ENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIE 475 (530)
T ss_pred CCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 112222 2345566763 567899999999999 899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCcee
Q 004463 368 ALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 409 (752)
Q Consensus 368 ~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~ 409 (752)
.+...+.++ ++|+|++|||.+ +..+|++++.+.+|.+.
T Consensus 476 ~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 476 SLNMALEKY----EGTLIFVSHDREFVSSLATRIIEITPDGVV 514 (530)
T ss_pred HHHHHHHHC----CCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 998855443 569999999988 55689999999999876
No 247
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.90 E-value=7.1e-24 Score=204.39 Aligned_cols=139 Identities=21% Similarity=0.225 Sum_probs=112.1
Q ss_pred EEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCc
Q 004463 245 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDH 322 (752)
Q Consensus 245 ~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~ 322 (752)
+++|+++.|++..+ ++||++.+| ++++|+||||+|||||++++ +|...|.+|...+... ..+
T Consensus 2 ~~~~l~~~~~~~~~l~~~~~~~~~G-e~~~i~G~nGsGKStLl~~l--------~G~~~~~~G~i~~~~~----~~i--- 65 (144)
T cd03221 2 ELENLSKTYGGKLLLKDISLTINPG-DRIGLVGRNGAGKSTLLKLI--------AGELEPDEGIVTWGST----VKI--- 65 (144)
T ss_pred EEEEEEEEECCceEEEeeEEEECCC-CEEEEECCCCCCHHHHHHHH--------cCCCCCCceEEEECCe----EEE---
Confidence 57899999987555 999999999 99999999999999999999 8888787774332210 000
Q ss_pred hhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhccc
Q 004463 323 QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKD 400 (752)
Q Consensus 323 ~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~ 400 (752)
..+..||+||+ |++++++++.+|+++|||||++|+|+.....+...+. .+ +.|+|++||+.+ +..+|+++
T Consensus 66 ----~~~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~-~~---~~til~~th~~~~~~~~~d~v 137 (144)
T cd03221 66 ----GYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALK-EY---PGTVILVSHDRYFLDQVATKI 137 (144)
T ss_pred ----EEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH-Hc---CCEEEEEECCHHHHHHhCCEE
Confidence 11122999999 8999999999999999999999999999998888443 33 579999999988 44689998
Q ss_pred ccccCCc
Q 004463 401 TRFENAA 407 (752)
Q Consensus 401 ~~i~~g~ 407 (752)
+.+.+|+
T Consensus 138 ~~l~~g~ 144 (144)
T cd03221 138 IELEDGK 144 (144)
T ss_pred EEEeCCC
Confidence 8887763
No 248
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.90 E-value=8.5e-24 Score=249.57 Aligned_cols=162 Identities=20% Similarity=0.224 Sum_probs=122.3
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh-h---hc----eeecCCCC--CCc
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-K---AG----LYLPAKNH--PRL 309 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a-q---~G----~~vP~~~~--~~l 309 (752)
||.++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |++.+-. . .| .++|+... ...
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~G-e~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~ 81 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDN-ERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEG 81 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCC
Confidence 6889999999998766 999999999 99999999999999999999 6553310 0 00 12222110 000
Q ss_pred hHHH-------------------------------------------------------HHHHHcCCchhhhcCcccchH
Q 004463 310 PWFD-------------------------------------------------------LILADIGDHQSLEQNLSTFSG 334 (752)
Q Consensus 310 ~~~d-------------------------------------------------------~i~~~ig~~~~i~~~~stlSg 334 (752)
.+++ .++..+|+. .++.+++|||
T Consensus 82 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSg 159 (635)
T PRK11147 82 TVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSG 159 (635)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCH
Confidence 0111 122233332 3678899999
Q ss_pred HHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 335 HIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 335 g~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
||+ |++++++++.+|+||||||||+|||+.....|...+.++ +++||++|||.+ +..+|++++.+.+|.+..+
T Consensus 160 GekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~ 234 (635)
T PRK11147 160 GWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIFISHDRSFIRNMATRIVDLDRGKLVSY 234 (635)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEEEeCCHHHHHHhcCeEEEEECCEEEEe
Confidence 999 899999999999999999999999999998887744333 469999999988 5668999999999987644
No 249
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.90 E-value=1.4e-23 Score=216.88 Aligned_cols=165 Identities=21% Similarity=0.290 Sum_probs=128.2
Q ss_pred EEEcccccccCC----eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhh---hhh----------------hh
Q 004463 244 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS---LMS----------------KA 297 (752)
Q Consensus 244 l~~~~ls~~y~~----~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~---~~a----------------q~ 297 (752)
+.++||++.|++ ..+ ++||++.+| ++++|+||||||||||||++ |+.. +.. +.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESG-QVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCC-eEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 457889999964 244 899999999 99999999999999999999 7765 311 11
Q ss_pred ceeecCCCC--CCchHHHH-------------------------HHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCC
Q 004463 298 GLYLPAKNH--PRLPWFDL-------------------------ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 349 (752)
Q Consensus 298 G~~vP~~~~--~~l~~~d~-------------------------i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~ 349 (752)
..++|+... ..+++.++ ++..+++....++.++.||+|++ |++++++++.+|
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 162 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDP 162 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCC
Confidence 235665531 11222222 23334455556678899999999 899999999999
Q ss_pred cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecch--hHHhhhcccccccCCceee
Q 004463 350 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA--DLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 350 ~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~--~l~~~a~~~~~i~~g~v~~ 410 (752)
+++||||||+|||+.....+...+ ..+.+.+.|+|++||+. ++..+||+++.+.+|++..
T Consensus 163 ~illlDEP~~gLD~~~~~~~~~~l-~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~ 224 (226)
T cd03234 163 KVLILDEPTSGLDSFTALNLVSTL-SQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVY 224 (226)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHH-HHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEe
Confidence 999999999999999999999844 44566688999999997 4788999999999998754
No 250
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.6e-23 Score=219.41 Aligned_cols=161 Identities=18% Similarity=0.288 Sum_probs=124.6
Q ss_pred CCeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------------
Q 004463 241 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------- 294 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~----------------------- 294 (752)
..||.++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |++.+.
T Consensus 18 ~~~l~~~nl~~~~~~~~~l~~vs~~i~~G-e~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 18 HSVFEVEGVKVFYGGFLALVDVHLKIPAK-KIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred CceEEEeeEEEEeCCeEEEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 358899999999987655 999999999 99999999999999999999 664210
Q ss_pred ---hhhceeecCCCCC-CchHHHHH--------------------HHHcCC----chhhhcCcccchHHHH-HHHHHHHc
Q 004463 295 ---SKAGLYLPAKNHP-RLPWFDLI--------------------LADIGD----HQSLEQNLSTFSGHIS-RIVDILEL 345 (752)
Q Consensus 295 ---aq~G~~vP~~~~~-~l~~~d~i--------------------~~~ig~----~~~i~~~~stlSgg~k-rl~~i~~l 345 (752)
.+...|+|+.... ..++++++ +..++. .+..++.+.+||+||+ |+++++++
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL 176 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAI 176 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 0112356665311 11233332 222332 2345678899999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhccccccc
Q 004463 346 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE 404 (752)
Q Consensus 346 a~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~ 404 (752)
+.+|++|||||||+|||+.....+...+.+ +.+ +.|+|++||+.+ +..+|++++.+.
T Consensus 177 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~-~~~-~~tiii~sH~~~~~~~~~d~i~~l~ 234 (274)
T PRK14265 177 AMKPDVLLMDEPCSALDPISTRQVEELCLE-LKE-QYTIIMVTHNMQQASRVADWTAFFN 234 (274)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHH-Hhc-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 999999999999999999999999995554 554 689999999987 567999999886
No 251
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.1e-23 Score=223.28 Aligned_cols=169 Identities=17% Similarity=0.212 Sum_probs=129.4
Q ss_pred CCCeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh----------------h------
Q 004463 240 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------M------ 294 (752)
Q Consensus 240 g~~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~----------------~------ 294 (752)
|..|++++||++.|++..+ +++|+|.+| ++++|+|||||||||||++| |+..+ +
T Consensus 36 ~~~~l~i~~l~~~~~~~~il~~is~~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 36 GETVIEARDLNVFYGDEQALDDVSMDIPEN-QVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CCceEEEEEEEEEECCEeeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 5568999999999987665 999999999 99999999999999999999 77531 0
Q ss_pred ----hhhceeecCCCCC-CchHHHH--------------------HHHHcCCc----hhhhcCcccchHHHH-HHHHHHH
Q 004463 295 ----SKAGLYLPAKNHP-RLPWFDL--------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDILE 344 (752)
Q Consensus 295 ----aq~G~~vP~~~~~-~l~~~d~--------------------i~~~ig~~----~~i~~~~stlSgg~k-rl~~i~~ 344 (752)
.+...|+|+.... ..++.++ ++..+|+. +.+++.+++||+||+ |++++++
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAra 194 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARA 194 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHH
Confidence 0112356655310 1122222 23344542 346788899999999 8999999
Q ss_pred ccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-Hhhhcccc-cccCCceeec
Q 004463 345 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDT-RFENAATEFS 411 (752)
Q Consensus 345 la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~-~i~~g~v~~~ 411 (752)
++.+|+||||||||+|||+.....+...+ ..+.+ +.++|++||+.+. ..+|++++ .+.+|++..+
T Consensus 195 L~~~p~lLLLDEPts~LD~~~~~~l~~~L-~~~~~-~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~ 261 (285)
T PRK14254 195 IAPDPEVILMDEPASALDPVATSKIEDLI-EELAE-EYTVVIVTHNMQQAARISDKTAVFLTGGELVEF 261 (285)
T ss_pred HHcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHhc-CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEe
Confidence 99999999999999999999999998844 45555 3799999999885 56899865 4688887544
No 252
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.1e-23 Score=221.44 Aligned_cols=163 Identities=17% Similarity=0.257 Sum_probs=125.9
Q ss_pred CCCeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-----h-----------------
Q 004463 240 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M----------------- 294 (752)
Q Consensus 240 g~~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-----~----------------- 294 (752)
+..|++++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |++.+ .
T Consensus 10 ~~~~l~i~nl~~~~~~~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 10 KNIIISLQNVTISYGTFEAVKNVFCDIPRG-KVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred CCceEEEEeEEEEECCEEEEcceEEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 4568999999999987665 999999999 99999999999999999999 76531 0
Q ss_pred ----hhhceeecCCCCC-CchHHHH--------------------HHHHcCC----chhhhcCcccchHHHH-HHHHHHH
Q 004463 295 ----SKAGLYLPAKNHP-RLPWFDL--------------------ILADIGD----HQSLEQNLSTFSGHIS-RIVDILE 344 (752)
Q Consensus 295 ----aq~G~~vP~~~~~-~l~~~d~--------------------i~~~ig~----~~~i~~~~stlSgg~k-rl~~i~~ 344 (752)
.+...|+|+.... ..++.++ ++..++. .+..++.+.+||+||+ |++++++
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~lara 168 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIART 168 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHH
Confidence 0112356665310 0122222 2333333 2345778899999999 8999999
Q ss_pred ccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccC
Q 004463 345 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 405 (752)
Q Consensus 345 la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~ 405 (752)
++.+|++|||||||+|||+.....+...+ ..+.+ +.|+|++||+.+ +..+|++++.+.+
T Consensus 169 l~~~p~lllLDEPt~gLD~~~~~~l~~~l-~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 169 IAIEPEVILMDEPCSALDPISTLKIEETM-HELKK-NFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhc-CCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 99999999999999999999999998844 44554 689999999987 5679999988886
No 253
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.90 E-value=1.6e-23 Score=240.36 Aligned_cols=170 Identities=16% Similarity=0.181 Sum_probs=132.6
Q ss_pred CCeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh------------h---------hh
Q 004463 241 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------M---------SK 296 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------------~---------aq 296 (752)
..|++++|+++.|++..+ ++||++.+| ++++|+||||||||||||+| |+... . .+
T Consensus 258 ~~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRPILHNLSWQVNPG-EHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred CceEEEeceEEEECCeeEEeeceEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 458999999999987655 999999999 99999999999999999999 76432 0 01
Q ss_pred hceeecCCCCC--C--ch-------------------------HHHHHHHHcCCch-hhhcCcccchHHHH-HHHHHHHc
Q 004463 297 AGLYLPAKNHP--R--LP-------------------------WFDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILEL 345 (752)
Q Consensus 297 ~G~~vP~~~~~--~--l~-------------------------~~d~i~~~ig~~~-~i~~~~stlSgg~k-rl~~i~~l 345 (752)
...|+|+.... . .. .++.++..+|+.+ ..++++++|||||+ |+++++++
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al 416 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRAL 416 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHH
Confidence 12344443100 0 00 1234456677776 77889999999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCC-cEEEEEecchhHH-h-hhcccccccCCceeecc
Q 004463 346 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV-GLAVVTTHYADLS-C-LKDKDTRFENAATEFSL 412 (752)
Q Consensus 346 a~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~-~tviitTH~~~l~-~-~a~~~~~i~~g~v~~~~ 412 (752)
+.+|++|||||||+|||+.....+.. ++..+.+.+ .|+|++||+.++. . +|++++.+.+|.+..+.
T Consensus 417 ~~~p~lllLDEPt~gLD~~~~~~l~~-~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 417 VKHPTLLILDEPLQGLDPLNRQLVRR-FVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHH-HHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 99999999999999999999999999 444555555 4699999998854 4 58889999999876653
No 254
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.2e-23 Score=218.75 Aligned_cols=167 Identities=17% Similarity=0.214 Sum_probs=128.5
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------------------------
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------ 294 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------------ 294 (752)
.+++++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |++.+-
T Consensus 3 ~~l~~~~l~~~~~~~~il~~~s~~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQVLKNINMDFPER-QITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred ceEEEEEEEEEECCeeEecceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 36789999999987655 999999999 99999999999999999999 765431
Q ss_pred --hhhceeecCCCCC-CchHHHHH----------------------HHHcCCc----hhhhcCcccchHHHH-HHHHHHH
Q 004463 295 --SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILE 344 (752)
Q Consensus 295 --aq~G~~vP~~~~~-~l~~~d~i----------------------~~~ig~~----~~i~~~~stlSgg~k-rl~~i~~ 344 (752)
.+...|+|+.... ..++.+++ +..+++. +..++.+.+||+||+ |++++++
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lara 161 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARV 161 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 0112355555310 11222222 2223332 345788899999999 8999999
Q ss_pred ccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 345 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 345 la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
++.+|+++||||||+|||+.....+.. ++..+. .+.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 162 l~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~-~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14249 162 LAIEPEVILMDEPCSALDPVSTMRIEE-LMQELK-QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEY 227 (251)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHh-cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEe
Confidence 999999999999999999999999988 444554 4789999999987 5668999999999987543
No 255
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.90 E-value=2e-23 Score=241.73 Aligned_cols=168 Identities=18% Similarity=0.210 Sum_probs=132.5
Q ss_pred CeEEEcccccccCC----eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-----h---------------
Q 004463 242 SEMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M--------------- 294 (752)
Q Consensus 242 ~~l~~~~ls~~y~~----~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-----~--------------- 294 (752)
.|++++||++.|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+ .
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~G-e~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAG-ETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCC-CEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 48899999999963 344 999999999 99999999999999999999 77652 0
Q ss_pred -------h-hhceeecCCCC----CCchH----------------------HHHHHHHcCCch---hhhcCcccchHHHH
Q 004463 295 -------S-KAGLYLPAKNH----PRLPW----------------------FDLILADIGDHQ---SLEQNLSTFSGHIS 337 (752)
Q Consensus 295 -------a-q~G~~vP~~~~----~~l~~----------------------~d~i~~~ig~~~---~i~~~~stlSgg~k 337 (752)
. +.-.|+|+... ....+ ++.++..+|+.+ ..++.+++|||||+
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~ 162 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGER 162 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHH
Confidence 0 11246677631 01111 122345566654 35889999999999
Q ss_pred -HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 338 -RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 338 -rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
|++++++++.+|++|||||||+||||.....+.. ++..+.+ .|.|+|++||+++ +..+|++++.+.+|++..+
T Consensus 163 qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~ 238 (529)
T PRK15134 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILQ-LLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQ 238 (529)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHH-HHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEe
Confidence 8999999999999999999999999999999998 5555654 4889999999988 5669999999999987654
No 256
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2e-23 Score=218.69 Aligned_cols=166 Identities=16% Similarity=0.225 Sum_probs=128.7
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------------
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------- 294 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------------- 294 (752)
|++++|+++.|++..+ ++||++.+| ++++|+||||+|||||||+| |+..+-
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPAR-QVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCC-CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 5789999999987665 999999999 99999999999999999999 765420
Q ss_pred hhhceeecCCCC-CCchHHHHH----------------------HHHcCCc----hhhhcCcccchHHHH-HHHHHHHcc
Q 004463 295 SKAGLYLPAKNH-PRLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILELV 346 (752)
Q Consensus 295 aq~G~~vP~~~~-~~l~~~d~i----------------------~~~ig~~----~~i~~~~stlSgg~k-rl~~i~~la 346 (752)
.+...|+|+... ...++.+++ +..++.. +..+..+.+||+||+ |++++++++
T Consensus 82 ~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 161 (249)
T PRK14253 82 RIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIA 161 (249)
T ss_pred HhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHH
Confidence 011235665531 112222222 1223322 345677889999999 899999999
Q ss_pred CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 347 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 347 ~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
.+|+|+||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 162 ~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~ 225 (249)
T PRK14253 162 MEPDVILMDEPTSALDPIATHKIEE-LMEELKK-NYTIVIVTHSMQQARRISDRTAFFLMGELVEH 225 (249)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999998 5555655 589999999988 5678999999999988654
No 257
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.9e-23 Score=221.94 Aligned_cols=169 Identities=20% Similarity=0.217 Sum_probs=130.2
Q ss_pred CCCeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhh-----hh-----------------
Q 004463 240 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-----LM----------------- 294 (752)
Q Consensus 240 g~~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~-----~~----------------- 294 (752)
+..|++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++. +-
T Consensus 21 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 21 KKVVFDTQNLNLWYGEDHALKNINLDIHEN-EVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred CceEEEEeeeEEEECCcceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 4458999999999987555 999999999 99999999999999999999 7763 10
Q ss_pred ----hhhceeecCCCCC-CchHHHHHH----------------------HHc----CCchhhhcCcccchHHHH-HHHHH
Q 004463 295 ----SKAGLYLPAKNHP-RLPWFDLIL----------------------ADI----GDHQSLEQNLSTFSGHIS-RIVDI 342 (752)
Q Consensus 295 ----aq~G~~vP~~~~~-~l~~~d~i~----------------------~~i----g~~~~i~~~~stlSgg~k-rl~~i 342 (752)
.+...|+|+.... ..++.+++. ..+ +..+.+++.+..||+||+ |++++
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~la 179 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIA 179 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHH
Confidence 0112355665311 112333331 111 122335678889999999 89999
Q ss_pred HHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 343 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 343 ~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
++++.+|+++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+. ..+|++++.+.+|.+...
T Consensus 180 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~-~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 247 (271)
T PRK14238 180 RCLAIEPDVILMDEPTSALDPISTLKVEELV-QELKK-DYSIIIVTHNMQQAARISDKTAFFLNGYVNEY 247 (271)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHH-HHHHc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999844 45555 6899999999884 678999999999988654
No 258
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.1e-23 Score=241.72 Aligned_cols=162 Identities=19% Similarity=0.165 Sum_probs=130.2
Q ss_pred cccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh--------------------hhhceeecC
Q 004463 247 GSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLYLPA 303 (752)
Q Consensus 247 ~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------------aq~G~~vP~ 303 (752)
+||+++|++..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+.-.|+|+
T Consensus 2 ~nl~~~~~~~~il~~vs~~i~~G-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 80 (491)
T PRK10982 2 SNISKSFPGVKALDNVNLKVRPH-SIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQ 80 (491)
T ss_pred CceEEEeCCEEeeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEec
Confidence 688999987665 999999999 99999999999999999999 765321 011236676
Q ss_pred CCC--CCchH------------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeC
Q 004463 304 KNH--PRLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 356 (752)
Q Consensus 304 ~~~--~~l~~------------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDE 356 (752)
... ..+++ ++.++..+|+....++.+++|||||+ |++++++++.+|++|||||
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDE 160 (491)
T PRK10982 81 ELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDE 160 (491)
T ss_pred ccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 531 11122 22345556776677889999999999 8999999999999999999
Q ss_pred CCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 004463 357 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 410 (752)
Q Consensus 357 p~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~ 410 (752)
||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+|++++.+.+|++..
T Consensus 161 Pt~~LD~~~~~~l~~-~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~ 214 (491)
T PRK10982 161 PTSSLTEKEVNHLFT-IIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIA 214 (491)
T ss_pred CCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999998 55556777899999999988 567999999999998754
No 259
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.90 E-value=2e-23 Score=220.95 Aligned_cols=151 Identities=15% Similarity=0.124 Sum_probs=116.1
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhhh----hc--eeecCCC--CCCchHHH----------------
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK----AG--LYLPAKN--HPRLPWFD---------------- 313 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~aq----~G--~~vP~~~--~~~l~~~d---------------- 313 (752)
++||++.+| ++++|+|||||||||||++| |++.+-.- .| .++++.. ...+++.+
T Consensus 42 ~is~~i~~G-e~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~ 120 (264)
T PRK13546 42 DISLKAYEG-DVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEI 120 (264)
T ss_pred eeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHH
Confidence 899999999 99999999999999999999 55443210 00 1111111 01122222
Q ss_pred -----HHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEE
Q 004463 314 -----LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVT 387 (752)
Q Consensus 314 -----~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviit 387 (752)
.++..+++.+.+++.+.+||+||+ |++++++++.+|++|||||||+|||+.....+...+ ..+.+.+.|+|++
T Consensus 121 ~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L-~~~~~~g~tiIii 199 (264)
T PRK13546 121 KAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKI-YEFKEQNKTIFFV 199 (264)
T ss_pred HHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHH-HHHHHCCCEEEEE
Confidence 233445667778889999999999 899999999999999999999999999999999854 4456678899999
Q ss_pred ecchh-HHhhhcccccccCCceeec
Q 004463 388 THYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 388 TH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
||+.+ +..+|++++.+.+|++...
T Consensus 200 sH~~~~i~~~~d~i~~l~~G~i~~~ 224 (264)
T PRK13546 200 SHNLGQVRQFCTKIAWIEGGKLKDY 224 (264)
T ss_pred cCCHHHHHHHcCEEEEEECCEEEEe
Confidence 99987 5678999999999987543
No 260
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.90 E-value=2.4e-23 Score=219.42 Aligned_cols=167 Identities=13% Similarity=0.039 Sum_probs=125.2
Q ss_pred CeEEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhh
Q 004463 242 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 297 (752)
Q Consensus 242 ~~l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~ 297 (752)
++++++|++++|++ ..+ ++||++.+| ++++|+||||+|||||||+| |++.+. .+.
T Consensus 18 ~~i~~~~l~~~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPG-QKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred ceEEEEEEEEEeCCCCCcceeEEEEEEcCC-CEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 57899999999975 334 999999999 99999999999999999999 665321 112
Q ss_pred ceeecCCCCC-CchH--------------HHHHHHHcCC-----------chhhhcCcccchHHHH-HHHHHHHccCCCc
Q 004463 298 GLYLPAKNHP-RLPW--------------FDLILADIGD-----------HQSLEQNLSTFSGHIS-RIVDILELVSRES 350 (752)
Q Consensus 298 G~~vP~~~~~-~l~~--------------~d~i~~~ig~-----------~~~i~~~~stlSgg~k-rl~~i~~la~~~~ 350 (752)
..|+|+.... ..++ +..++...+. ...+.....+||+||+ |++++++++.+|+
T Consensus 97 i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 176 (257)
T cd03288 97 LSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSS 176 (257)
T ss_pred EEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 2455655310 0011 1112222232 2233445679999999 8999999999999
Q ss_pred EEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 351 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 351 LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
+|||||||+|+|+.....+...+ ..+.+ +.|+|++||+++....|++++.+.+|++..+
T Consensus 177 llllDEPt~gLD~~~~~~l~~~l-~~~~~-~~tiii~sh~~~~~~~~dri~~l~~G~i~~~ 235 (257)
T cd03288 177 ILIMDEATASIDMATENILQKVV-MTAFA-DRTVVTIAHRVSTILDADLVLVLSRGILVEC 235 (257)
T ss_pred EEEEeCCccCCCHHHHHHHHHHH-HHhcC-CCEEEEEecChHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999988888744 44544 7899999999986667999999999988654
No 261
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.7e-23 Score=219.16 Aligned_cols=167 Identities=23% Similarity=0.247 Sum_probs=130.2
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh-----------------------
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS----------------------- 295 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a----------------------- 295 (752)
.|+.++|++++|++..+ ++||++.+| ++++|+||||+||||||++| |+..+-.
T Consensus 9 ~~i~~~~~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 9 DVFNISRLYLYINDKAILKDITIKIPNN-SIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred hheeeeeEEEecCCceeEeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 47889999999998776 999999999 99999999999999999999 6653210
Q ss_pred --hhceeecCCCC--CCchHHHH----------------------HHHHcCCc----hhhhcCcccchHHHH-HHHHHHH
Q 004463 296 --KAGLYLPAKNH--PRLPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDILE 344 (752)
Q Consensus 296 --q~G~~vP~~~~--~~l~~~d~----------------------i~~~ig~~----~~i~~~~stlSgg~k-rl~~i~~ 344 (752)
+...|+|+... ..+++.++ ++..+++. +..++.+..||+||+ |++++++
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lara 167 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARA 167 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHH
Confidence 11235565531 11222222 23334553 345678899999999 8999999
Q ss_pred ccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhcccccccCCceeec
Q 004463 345 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 411 (752)
Q Consensus 345 la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~-~~a~~~~~i~~g~v~~~ 411 (752)
++.+|+++||||||+|||+.....+...+ ..+.+ ++|+|++||+.+.. .+|++.+.+.+|.+...
T Consensus 168 l~~~P~llllDEPt~~LD~~~~~~l~~~l-~~~~~-~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~ 233 (257)
T PRK14246 168 LALKPKVLLMDEPTSMIDIVNSQAIEKLI-TELKN-EIAIVIVSHNPQQVARVADYVAFLYNGELVEW 233 (257)
T ss_pred HHcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhc-CcEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999844 45554 58999999998854 78999999999887654
No 262
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=3.7e-23 Score=210.39 Aligned_cols=164 Identities=18% Similarity=0.194 Sum_probs=122.2
Q ss_pred eEEEcccccccC----CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhh---hhh-----------------
Q 004463 243 EMTVGSLSKGIS----DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS---LMS----------------- 295 (752)
Q Consensus 243 ~l~~~~ls~~y~----~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~---~~a----------------- 295 (752)
.+.++||+|.|+ +..+ ++||++.+| ++++|+|||||||||||++| |+.. +..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPG-EMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCC-cEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhh
Confidence 356899999995 3344 999999999 99999999999999999999 6654 110
Q ss_pred -hhceeecCCC--CCCchHHHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHH
Q 004463 296 -KAGLYLPAKN--HPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALAT 371 (752)
Q Consensus 296 -q~G~~vP~~~--~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~ 371 (752)
+.-.|+|+.. ...+++.+++...... ..++.+..||+||+ |++++++++.+|+++||||||+|+|+.....+..
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~--~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~ 159 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC--KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILK 159 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh--ccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHH
Confidence 0112445442 1224455554321111 15778899999999 8999999999999999999999999999999999
Q ss_pred HHHHHHhcC-CcEEEEE-ecch-hHHhhhcccccccCCceee
Q 004463 372 SILQYLRDR-VGLAVVT-THYA-DLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 372 all~~l~~~-~~tviit-TH~~-~l~~~a~~~~~i~~g~v~~ 410 (752)
.+. .+.+. +.++|++ +|+. ++..+|++++.+.+|.+..
T Consensus 160 ~l~-~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~ 200 (202)
T cd03233 160 CIR-TMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIY 200 (202)
T ss_pred HHH-HHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEe
Confidence 554 45543 5666555 5554 4778999999999998754
No 263
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.6e-23 Score=216.58 Aligned_cols=167 Identities=17% Similarity=0.190 Sum_probs=128.1
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------h-----------------
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------S----------------- 295 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------a----------------- 295 (752)
.|++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+. +
T Consensus 5 ~~i~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 5 IILSTKNLNLWYGEKHALYDITISIPKN-RVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred ceEEEeeeEEEECCeeeeeeeEEEECCC-cEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 37889999999987666 999999999 99999999999999999999 654210 0
Q ss_pred ---hhceeecCCCCC-CchHHHH----------------------HHHHcCCc----hhhhcCcccchHHHH-HHHHHHH
Q 004463 296 ---KAGLYLPAKNHP-RLPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDILE 344 (752)
Q Consensus 296 ---q~G~~vP~~~~~-~l~~~d~----------------------i~~~ig~~----~~i~~~~stlSgg~k-rl~~i~~ 344 (752)
+...|+|+.... ..++.++ ++..+++. ..+++.+..||+|++ |++++++
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 163 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIART 163 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHH
Confidence 112355555311 1122222 22233332 235678899999999 8999999
Q ss_pred ccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 345 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 345 la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
++.+|+++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 164 l~~~p~lllLDEP~~gLD~~~~~~l~~~l-~~~~~-~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14261 164 LAVNPEVILMDEPCSALDPIATAKIEDLI-EDLKK-EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEF 229 (253)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhh-CceEEEEEcCHHHHHhhCCEEEEEECCEEEEc
Confidence 99999999999999999999999998844 45555 589999999987 5569999999999987654
No 264
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.90 E-value=6.1e-24 Score=211.61 Aligned_cols=143 Identities=25% Similarity=0.243 Sum_probs=112.0
Q ss_pred cccccccCCeeE-eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhh
Q 004463 247 GSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSL 325 (752)
Q Consensus 247 ~~ls~~y~~~~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i 325 (752)
.||++.|++..+ ..++++.+| ++++|+||||||||||||++ +|+..|.+|...+... .++. .
T Consensus 4 ~~l~~~~~~~~~l~~~~~i~~G-e~~~l~G~nGsGKSTLl~~l--------~Gl~~p~~G~i~~~g~-----~i~~---~ 66 (177)
T cd03222 4 PDCVKRYGVFFLLVELGVVKEG-EVIGIVGPNGTGKTTAVKIL--------AGQLIPNGDNDEWDGI-----TPVY---K 66 (177)
T ss_pred CCeEEEECCEEEEccCcEECCC-CEEEEECCCCChHHHHHHHH--------HcCCCCCCcEEEECCE-----EEEE---E
Confidence 478899988776 445899999 99999999999999999999 8888887774333210 0110 0
Q ss_pred hcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcC-CcEEEEEecchh-HHhhhccccc
Q 004463 326 EQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTR 402 (752)
Q Consensus 326 ~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~-~~tviitTH~~~-l~~~a~~~~~ 402 (752)
.+.. .||+||+ |++++++++.+|+++||||||+|+|+.....+...+.+ +.++ +.++|++||+++ +..+|++++.
T Consensus 67 ~q~~-~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~-~~~~~~~tiiivsH~~~~~~~~~d~i~~ 144 (177)
T cd03222 67 PQYI-DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRR-LSEEGKKTALVVEHDLAVLDYLSDRIHV 144 (177)
T ss_pred cccC-CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH-HHHcCCCEEEEEECCHHHHHHhCCEEEE
Confidence 1111 1999999 89999999999999999999999999999999985555 4444 489999999988 4558998887
Q ss_pred ccCCce
Q 004463 403 FENAAT 408 (752)
Q Consensus 403 i~~g~v 408 (752)
+.++..
T Consensus 145 l~~~~~ 150 (177)
T cd03222 145 FEGEPG 150 (177)
T ss_pred EcCCCc
Confidence 776543
No 265
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.90 E-value=1.6e-23 Score=240.97 Aligned_cols=169 Identities=13% Similarity=0.123 Sum_probs=134.1
Q ss_pred CCeEEEcccccccC---CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-h-------------------
Q 004463 241 NSEMTVGSLSKGIS---DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-M------------------- 294 (752)
Q Consensus 241 ~~~l~~~~ls~~y~---~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-~------------------- 294 (752)
..|++++|+++.|+ +..+ ++||++.+| ++++|+||||||||||||++ |++.+ .
T Consensus 255 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~G-e~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~ 333 (500)
T TIGR02633 255 DVILEARNLTCWDVINPHRKRVDDVSFSLRRG-EILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQA 333 (500)
T ss_pred CceEEEeCCcccccccccccccccceeEEeCC-cEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHH
Confidence 34789999999993 3344 999999999 99999999999999999999 77642 0
Q ss_pred -hhhceeecCCCC-----CCch--------------------------HHHHHHHHcCCch-hhhcCcccchHHHH-HHH
Q 004463 295 -SKAGLYLPAKNH-----PRLP--------------------------WFDLILADIGDHQ-SLEQNLSTFSGHIS-RIV 340 (752)
Q Consensus 295 -aq~G~~vP~~~~-----~~l~--------------------------~~d~i~~~ig~~~-~i~~~~stlSgg~k-rl~ 340 (752)
.+.-.|+|+... ..++ .++.++..+++.. ..++.+.+|||||+ |++
T Consensus 334 ~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 413 (500)
T TIGR02633 334 IRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAV 413 (500)
T ss_pred HhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHH
Confidence 011135555520 0000 1234566677753 57889999999999 899
Q ss_pred HHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 341 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 341 ~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
++++++.+|++|||||||+|||+.....+.. ++..+.+.|.|+|++|||++ +..+|++++.+.+|.+.++
T Consensus 414 la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 484 (500)
T TIGR02633 414 LAKMLLTNPRVLILDEPTRGVDVGAKYEIYK-LINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGD 484 (500)
T ss_pred HHHHHhhCCCEEEEcCCCCCcCHhHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999988 55667777899999999988 6679999999999988654
No 266
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.90 E-value=3.7e-23 Score=225.58 Aligned_cols=169 Identities=18% Similarity=0.189 Sum_probs=131.9
Q ss_pred CCeEEEcccccccCC----ee-E-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------
Q 004463 241 NSEMTVGSLSKGISD----FP-V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------- 294 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~----~~-v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------- 294 (752)
..+|+++||++.|+. .. + ++||+|.+| ++++|+|+||||||||+++| |++..-
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~G-e~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~ 88 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAG-ETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 88 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCC-CEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence 457899999999952 23 3 999999999 99999999999999999999 776431
Q ss_pred -------hhhceeecCCCC----CCchHH----------------------HHHHHHcCCch---hhhcCcccchHHHH-
Q 004463 295 -------SKAGLYLPAKNH----PRLPWF----------------------DLILADIGDHQ---SLEQNLSTFSGHIS- 337 (752)
Q Consensus 295 -------aq~G~~vP~~~~----~~l~~~----------------------d~i~~~ig~~~---~i~~~~stlSgg~k- 337 (752)
.+.-.++|++.. ..+.+. ..++..+|+.+ .+++.+..|||||+
T Consensus 89 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~Q 168 (330)
T PRK09473 89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQ 168 (330)
T ss_pred HHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHH
Confidence 012346777641 112221 12344555542 34678999999999
Q ss_pred HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchhHH-hhhcccccccCCceeec
Q 004463 338 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLS-CLKDKDTRFENAATEFS 411 (752)
Q Consensus 338 rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~l~-~~a~~~~~i~~g~v~~~ 411 (752)
|++++++++.+|+|||+||||++||+.....+...+ ..+.+ .|.|+|++|||+.+. .+||++..|.+|.+...
T Consensus 169 Rv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL-~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 169 RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLL-NELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 899999999999999999999999999999999944 45554 588999999998855 58999999999988654
No 267
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.9e-23 Score=218.29 Aligned_cols=169 Identities=20% Similarity=0.231 Sum_probs=128.5
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------h-----------------
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------S----------------- 295 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------a----------------- 295 (752)
.+++++||++.|++..+ ++||++.+| ++++|+||||+||||||+++ |+..+- +
T Consensus 6 ~~l~~~nl~~~~~~~~il~~is~~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 6 PAIKVNNLSFYYDTQKILEGVSMEIYQS-KVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred ceEEEeeEEEEeCCeeEeeceEEEEcCC-cEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 47889999999987555 999999999 99999999999999999999 665431 0
Q ss_pred ---hhceeecCCCC-CCchHHHHH----------------------HHHcCCc----hhhhcCcccchHHHH-HHHHHHH
Q 004463 296 ---KAGLYLPAKNH-PRLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILE 344 (752)
Q Consensus 296 ---q~G~~vP~~~~-~~l~~~d~i----------------------~~~ig~~----~~i~~~~stlSgg~k-rl~~i~~ 344 (752)
+...|+|+... ...++.+++ +..++.. ...++.+.+||+||+ |++++++
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara 164 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARA 164 (261)
T ss_pred HhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 11224444321 112232222 2233332 234677889999999 8999999
Q ss_pred ccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccC-----Cceeec
Q 004463 345 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN-----AATEFS 411 (752)
Q Consensus 345 la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~-----g~v~~~ 411 (752)
++.+|+++||||||+|+|+.....+...+.+.....+.|+|++||+++ +..+|++++.+.+ |.+...
T Consensus 165 l~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 237 (261)
T PRK14258 165 LAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF 237 (261)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEe
Confidence 999999999999999999999999988555432345889999999988 5679999999998 887654
No 268
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.90 E-value=2.4e-23 Score=242.37 Aligned_cols=162 Identities=17% Similarity=0.181 Sum_probs=126.6
Q ss_pred CeEEEcccccccC-CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh--------hhceeecCCCC--C
Q 004463 242 SEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNH--P 307 (752)
Q Consensus 242 ~~l~~~~ls~~y~-~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a--------q~G~~vP~~~~--~ 307 (752)
.||+++||+++|+ ++++ ++||++.+| ++++|+||||||||||||+| |++.+.. ..-.|+|+... .
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~G-e~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 83 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPG-AKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDP 83 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCC
Confidence 4789999999998 6666 999999999 99999999999999999999 6664321 11136677642 1
Q ss_pred CchHHHHHH---------------------------------------------------------HHcCCchhhhcCcc
Q 004463 308 RLPWFDLIL---------------------------------------------------------ADIGDHQSLEQNLS 330 (752)
Q Consensus 308 ~l~~~d~i~---------------------------------------------------------~~ig~~~~i~~~~s 330 (752)
.+++++++. ..+|+. ..++.++
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~ 162 (556)
T PRK11819 84 EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-PWDAKVT 162 (556)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-cccCchh
Confidence 233444331 122222 2467889
Q ss_pred cchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCce
Q 004463 331 TFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAAT 408 (752)
Q Consensus 331 tlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v 408 (752)
+|||||+ |+.++++++.+|++|||||||+|||+.....+...+.+ + +.|+|++||+.+ +..+|++++.+.+|.+
T Consensus 163 ~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~-~---~~tviiisHd~~~~~~~~d~i~~l~~g~i 238 (556)
T PRK11819 163 KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHD-Y---PGTVVAVTHDRYFLDNVAGWILELDRGRG 238 (556)
T ss_pred hcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHh-C---CCeEEEEeCCHHHHHhhcCeEEEEeCCEE
Confidence 9999999 89999999999999999999999999999988874433 3 469999999988 5568999999999886
Q ss_pred e
Q 004463 409 E 409 (752)
Q Consensus 409 ~ 409 (752)
.
T Consensus 239 ~ 239 (556)
T PRK11819 239 I 239 (556)
T ss_pred E
Confidence 5
No 269
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.90 E-value=2.5e-23 Score=207.05 Aligned_cols=146 Identities=27% Similarity=0.319 Sum_probs=113.4
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH----HhhhhhhhhceeecCCCCCCchHH--HHHHHHcCCch-hhhcCccc
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL----GLASLMSKAGLYLPAKNHPRLPWF--DLILADIGDHQ-SLEQNLST 331 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i----Gli~~~aq~G~~vP~~~~~~l~~~--d~i~~~ig~~~-~i~~~~st 331 (752)
++||++.+| ++++|+||||||||||||++ |-+.+. | ..+......+.++ ..++..+++.. .+++.+++
T Consensus 13 ~isl~i~~G-~~~~l~G~nG~GKSTLl~~il~~~G~v~~~---~-~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~ 87 (176)
T cd03238 13 NLDVSIPLN-VLVVVTGVSGSGKSTLVNEGLYASGKARLI---S-FLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLST 87 (176)
T ss_pred ceEEEEcCC-CEEEEECCCCCCHHHHHHHHhhcCCcEEEC---C-cccccccccEEEEhHHHHHHHcCCCccccCCCcCc
Confidence 899999999 99999999999999999998 111111 0 0010000011111 34678888875 47899999
Q ss_pred chHHHH-HHHHHHHccCC--CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCce
Q 004463 332 FSGHIS-RIVDILELVSR--ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAAT 408 (752)
Q Consensus 332 lSgg~k-rl~~i~~la~~--~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v 408 (752)
||+||+ |++++++++.+ |+++||||||+|+|+.....+...+. .+.+.|.|+|++||+.+...+|++++.+.+|..
T Consensus 88 LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~-~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIK-GLIDLGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred CCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHH-HHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 999999 89999999999 99999999999999999999998554 456678999999999987778999888877655
Q ss_pred ee
Q 004463 409 EF 410 (752)
Q Consensus 409 ~~ 410 (752)
..
T Consensus 167 ~~ 168 (176)
T cd03238 167 KS 168 (176)
T ss_pred CC
Confidence 33
No 270
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.90 E-value=3.5e-23 Score=210.94 Aligned_cols=162 Identities=15% Similarity=0.123 Sum_probs=124.4
Q ss_pred CeEEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhh
Q 004463 242 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 297 (752)
Q Consensus 242 ~~l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~ 297 (752)
+.++++|+++.|++ ..+ ++||++.+| ++++|+||||+|||||||+| |+..+- .+.
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAG-EKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 56889999999975 234 999999999 99999999999999999999 665320 112
Q ss_pred ceeecCCCCC-CchHHHHH-----------HHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChH
Q 004463 298 GLYLPAKNHP-RLPWFDLI-----------LADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 364 (752)
Q Consensus 298 G~~vP~~~~~-~l~~~d~i-----------~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~ 364 (752)
-.|+|+.... ..++.+++ ...+. ++..+.+||+|++ |++++++++.+|+++||||||+|||+.
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~----~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 159 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR----VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYA 159 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh----ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHH
Confidence 2356665311 11333332 11111 4567899999999 899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 004463 365 EGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 365 ~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~ 410 (752)
....+...+.+ +. .+.|+|++||+.+....|++++.+.+|.+..
T Consensus 160 ~~~~l~~~l~~-~~-~~~tiii~th~~~~~~~~d~v~~l~~g~i~~ 203 (207)
T cd03369 160 TDALIQKTIRE-EF-TNSTILTIAHRLRTIIDYDKILVMDAGEVKE 203 (207)
T ss_pred HHHHHHHHHHH-hc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEe
Confidence 99998884544 44 3789999999988655689999999988754
No 271
>PRK13409 putative ATPase RIL; Provisional
Probab=99.90 E-value=2.7e-23 Score=242.39 Aligned_cols=164 Identities=24% Similarity=0.239 Sum_probs=131.7
Q ss_pred CCeEEEcccccccCCeeE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh------hhceeecCCCC--CCch
Q 004463 241 NSEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------KAGLYLPAKNH--PRLP 310 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a------q~G~~vP~~~~--~~l~ 310 (752)
..|++++|+++.|++..+ +++|++.+| ++++|+||||+|||||||+| |++.+.. ..-.|+|+... ..++
T Consensus 338 ~~~l~~~~ls~~~~~~~l~~~s~~i~~G-eiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~t 416 (590)
T PRK13409 338 ETLVEYPDLTKKLGDFSLEVEGGEIYEG-EVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGT 416 (590)
T ss_pred ceEEEEcceEEEECCEEEEecceEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCc
Confidence 357899999999987656 889999999 99999999999999999999 6654321 11235666532 1122
Q ss_pred H----------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHH
Q 004463 311 W----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSI 373 (752)
Q Consensus 311 ~----------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~al 373 (752)
+ .+.++..+++.+..++.+++|||||+ |++++++++.+|+++||||||+|||+..+..+...+
T Consensus 417 v~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l 496 (590)
T PRK13409 417 VEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAI 496 (590)
T ss_pred HHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 2 23456677888888999999999999 899999999999999999999999999999999955
Q ss_pred HHHHhcCCcEEEEEecchhH-HhhhcccccccC
Q 004463 374 LQYLRDRVGLAVVTTHYADL-SCLKDKDTRFEN 405 (752)
Q Consensus 374 l~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~ 405 (752)
.+...+.+.|+|++|||.++ ..+|++++.+.+
T Consensus 497 ~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~ 529 (590)
T PRK13409 497 RRIAEEREATALVVDHDIYMIDYISDRLMVFEG 529 (590)
T ss_pred HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 55434458899999999884 568999888765
No 272
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.3e-23 Score=219.33 Aligned_cols=168 Identities=18% Similarity=0.228 Sum_probs=130.0
Q ss_pred CCeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-----h------------------
Q 004463 241 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M------------------ 294 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-----~------------------ 294 (752)
..|++++|+++.|++..+ ++||++.+| ++++|+|||||||||||+++ |+..+ .
T Consensus 23 ~~~l~~~nl~~~~~~~~il~~vs~~i~~G-e~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 23 QTALEVRNLNLFYGDKQALFDISMRIPKN-RVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred CcEEEEEEEEEEECCeeEeeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 458999999999987665 999999999 99999999999999999999 77531 0
Q ss_pred ---hhhceeecCCCCC-CchHHHHH----------------------HHHcCCc----hhhhcCcccchHHHH-HHHHHH
Q 004463 295 ---SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDIL 343 (752)
Q Consensus 295 ---aq~G~~vP~~~~~-~l~~~d~i----------------------~~~ig~~----~~i~~~~stlSgg~k-rl~~i~ 343 (752)
.+.-.|+|++... ..++.+++ +..+++. ...++.+.+||+||+ |+++++
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 181 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIAR 181 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHH
Confidence 0112356655310 11233332 2233432 234677889999999 899999
Q ss_pred HccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 344 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 344 ~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+++.+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 182 al~~~p~lllLDEPt~gLD~~~~~~l~~~L~-~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 248 (272)
T PRK14236 182 AIAIEPEVLLLDEPTSALDPISTLKIEELIT-ELKS-KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEY 248 (272)
T ss_pred HHHCCCCEEEEeCCcccCCHHHHHHHHHHHH-HHHh-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEec
Confidence 9999999999999999999999999988555 4555 689999999988 4678999999999988654
No 273
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.90 E-value=3.7e-23 Score=238.97 Aligned_cols=170 Identities=19% Similarity=0.230 Sum_probs=132.5
Q ss_pred CCeEEEcccccccCC-----eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh------h--h---------
Q 004463 241 NSEMTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------M--S--------- 295 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~-----~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------~--a--------- 295 (752)
..|++++||+++|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+ + .
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~G-e~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEG-EIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccccccc
Confidence 458999999999952 334 999999999 99999999999999999999 66532 1 1
Q ss_pred ---------hhceeecCCCC--CCchHHH--------------------HHHHHcCCch-----hhhcCcccchHHHH-H
Q 004463 296 ---------KAGLYLPAKNH--PRLPWFD--------------------LILADIGDHQ-----SLEQNLSTFSGHIS-R 338 (752)
Q Consensus 296 ---------q~G~~vP~~~~--~~l~~~d--------------------~i~~~ig~~~-----~i~~~~stlSgg~k-r 338 (752)
+.-.|+|+... ..+++++ .++..+|+.. ..++.+.+|||||+ |
T Consensus 356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qr 435 (520)
T TIGR03269 356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHR 435 (520)
T ss_pred chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHH
Confidence 11236676531 1122222 2345566653 46889999999999 8
Q ss_pred HHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 339 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 339 l~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
++++++++.+|++|||||||+|||+.....+...+.+...+.|.|+|++||+.+ +..+|++++.+.+|.+...
T Consensus 436 v~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 509 (520)
T TIGR03269 436 VALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKI 509 (520)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999554433345889999999988 5569999999999987654
No 274
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.89 E-value=5.1e-23 Score=237.33 Aligned_cols=167 Identities=16% Similarity=0.205 Sum_probs=133.6
Q ss_pred CCeEEEcccccccCCeeE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------h-------------hhc
Q 004463 241 NSEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S-------------KAG 298 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------a-------------q~G 298 (752)
..|++++|+++.|+. .+ ++||++.+| ++++|+||||||||||||+| |++.+. . +.-
T Consensus 263 ~~~l~~~~l~~~~~~-~l~~isl~i~~G-e~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 263 ETVFEVRNVTSRDRK-KVRDISFSVCRG-EILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred CcEEEEeCccccCCC-cccceeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence 358999999998753 34 999999999 99999999999999999999 665320 0 112
Q ss_pred eeecCCC-----CCCchH------------------------------HHHHHHHcCCc-hhhhcCcccchHHHH-HHHH
Q 004463 299 LYLPAKN-----HPRLPW------------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVD 341 (752)
Q Consensus 299 ~~vP~~~-----~~~l~~------------------------------~d~i~~~ig~~-~~i~~~~stlSgg~k-rl~~ 341 (752)
.|+|+.. ...+++ ++.++..+|+. +..++.+.+|||||+ |+.+
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~l 420 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLI 420 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHH
Confidence 4677641 011111 23456667775 678899999999999 8999
Q ss_pred HHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 004463 342 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 410 (752)
Q Consensus 342 i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~ 410 (752)
+++++.+|++|||||||+|||+.....+.. ++..+.+.|.|+|++|||.+ +..+|++++.+.+|.+..
T Consensus 421 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 421 SKWLCCCPEVIIFDEPTRGIDVGAKAEIYK-VMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred HHHHhcCCCEEEECCCCCCcCHHHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999998 55556667899999999987 567999999999998754
No 275
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.5e-23 Score=216.42 Aligned_cols=164 Identities=18% Similarity=0.245 Sum_probs=127.2
Q ss_pred EEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh------h--------------------h
Q 004463 245 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------M--------------------S 295 (752)
Q Consensus 245 ~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------~--------------------a 295 (752)
+++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+ - .
T Consensus 7 ~~~~l~~~~~~~~~l~~is~~i~~G-e~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 85 (251)
T PRK14244 7 SVKNLNLWYGSKQILFDINLDIYKR-EVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR 85 (251)
T ss_pred EeeeEEEEECCeeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence 57899999987665 999999999 99999999999999999999 77531 0 0
Q ss_pred hhceeecCCCCC-CchHHH-----------------------HHHHHcCCch----hhhcCcccchHHHH-HHHHHHHcc
Q 004463 296 KAGLYLPAKNHP-RLPWFD-----------------------LILADIGDHQ----SLEQNLSTFSGHIS-RIVDILELV 346 (752)
Q Consensus 296 q~G~~vP~~~~~-~l~~~d-----------------------~i~~~ig~~~----~i~~~~stlSgg~k-rl~~i~~la 346 (752)
+...|+|+.... ..++.+ .++..+|+.. .+++.+..||+||+ |++++++++
T Consensus 86 ~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 165 (251)
T PRK14244 86 AKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIA 165 (251)
T ss_pred hhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHh
Confidence 112366665321 012222 2244455533 35677889999999 899999999
Q ss_pred CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 347 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 347 ~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
.+|+++||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 166 ~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 229 (251)
T PRK14244 166 VKPTMLLMDEPCSALDPVATNVIEN-LIQELKK-NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEY 229 (251)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhc-CCeEEEEeCCHHHHHhhcCEEEEEECCEEEEe
Confidence 9999999999999999999999988 4445554 789999999988 4568999999999988654
No 276
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.89 E-value=2.9e-23 Score=208.74 Aligned_cols=133 Identities=22% Similarity=0.237 Sum_probs=105.5
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh---------------------hhhceeecCCCC---CCchHH-
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAGLYLPAKNH---PRLPWF- 312 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~---------------------aq~G~~vP~~~~---~~l~~~- 312 (752)
++||++.+| ++++|+||||||||||||+| |+..+. .+...|+|+... ...++.
T Consensus 10 ~vsl~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~ 88 (190)
T TIGR01166 10 GLNFAAERG-EVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQ 88 (190)
T ss_pred ceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHH
Confidence 899999999 99999999999999999999 655321 111246666531 111221
Q ss_pred --------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHH
Q 004463 313 --------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALAT 371 (752)
Q Consensus 313 --------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~ 371 (752)
+.++..+|+.+..++.+++||+||+ |++++++++.+|+++||||||+|||+.....+..
T Consensus 89 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~ 168 (190)
T TIGR01166 89 DVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLA 168 (190)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 2345556777778899999999999 8999999999999999999999999999999998
Q ss_pred HHHHHHhcCCcEEEEEecchhH
Q 004463 372 SILQYLRDRVGLAVVTTHYADL 393 (752)
Q Consensus 372 all~~l~~~~~tviitTH~~~l 393 (752)
.+ ..+.+.+.++|++||+.++
T Consensus 169 ~l-~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 169 IL-RRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HH-HHHHHcCCEEEEEeecccc
Confidence 54 5556668899999999764
No 277
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.89 E-value=5.5e-23 Score=242.11 Aligned_cols=168 Identities=14% Similarity=0.180 Sum_probs=133.4
Q ss_pred CCeEEEcccccccCC----eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------h-----------
Q 004463 241 NSEMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S----------- 295 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~----~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------a----------- 295 (752)
..||+++||++.|++ .++ ++||++.+| ++++|+||||||||||||+| |++.+- .
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~G-e~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~ 88 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRG-ETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI 88 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCC-CEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccc
Confidence 358999999999963 234 999999999 99999999999999999999 665320 0
Q ss_pred ---------------hhceeecCCC----CCCchHHH----------------------HHHHHcCCc---hhhhcCccc
Q 004463 296 ---------------KAGLYLPAKN----HPRLPWFD----------------------LILADIGDH---QSLEQNLST 331 (752)
Q Consensus 296 ---------------q~G~~vP~~~----~~~l~~~d----------------------~i~~~ig~~---~~i~~~~st 331 (752)
+.-.++|+.. ...+++.+ .++..+|+. ..+++.+.+
T Consensus 89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~ 168 (623)
T PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ 168 (623)
T ss_pred ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCcc
Confidence 0113666653 12223222 235556764 347889999
Q ss_pred chHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCce
Q 004463 332 FSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAAT 408 (752)
Q Consensus 332 lSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~-l~~~a~~~~~i~~g~v 408 (752)
|||||+ |+.++++++.+|+||||||||++||+.....+.+ ++..+.+ .|.|||++||+++ +..+|++++.+.+|.+
T Consensus 169 LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~-ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i 247 (623)
T PRK10261 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ-LIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEA 247 (623)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCee
Confidence 999999 8999999999999999999999999999999999 6666764 4889999999987 5679999999999988
Q ss_pred ee
Q 004463 409 EF 410 (752)
Q Consensus 409 ~~ 410 (752)
..
T Consensus 248 ~~ 249 (623)
T PRK10261 248 VE 249 (623)
T ss_pred cc
Confidence 64
No 278
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.89 E-value=3.4e-23 Score=239.76 Aligned_cols=170 Identities=16% Similarity=0.185 Sum_probs=133.7
Q ss_pred CCCeEEEcccccccC-----------CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhh------hh-----
Q 004463 240 ENSEMTVGSLSKGIS-----------DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS------LM----- 294 (752)
Q Consensus 240 g~~~l~~~~ls~~y~-----------~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~------~~----- 294 (752)
+..|++++||++.|+ +..+ ++||++.+| ++++|+||||||||||||++ |++. +.
T Consensus 272 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~ 350 (529)
T PRK15134 272 ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPG-ETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLH 350 (529)
T ss_pred CCCcccccCcEEEeecCccccccccccceeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEcc
Confidence 345899999999995 2344 999999999 99999999999999999999 6652 10
Q ss_pred ----------hhhceeecCCCC----CCchHH-----------------------HHHHHHcCCc-hhhhcCcccchHHH
Q 004463 295 ----------SKAGLYLPAKNH----PRLPWF-----------------------DLILADIGDH-QSLEQNLSTFSGHI 336 (752)
Q Consensus 295 ----------aq~G~~vP~~~~----~~l~~~-----------------------d~i~~~ig~~-~~i~~~~stlSgg~ 336 (752)
.+.-.|+|+... ..+++. ..++..+|+. ...++.+++|||||
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~ 430 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQ 430 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHH
Confidence 111246676531 112221 2345556775 46788999999999
Q ss_pred H-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 337 S-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 337 k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+ |++++++++.+|++|||||||+|||+.....+...+. .+.+ .|.|||++||+.+ +..+|++++.+.+|.+...
T Consensus 431 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 507 (529)
T PRK15134 431 RQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLK-SLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQ 507 (529)
T ss_pred HHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHH-HHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEE
Confidence 9 8999999999999999999999999999999999554 4554 4889999999988 5569999999999987644
No 279
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.89 E-value=5e-23 Score=211.51 Aligned_cols=161 Identities=18% Similarity=0.166 Sum_probs=121.1
Q ss_pred EcccccccCC-eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------------hhhc
Q 004463 246 VGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAG 298 (752)
Q Consensus 246 ~~~ls~~y~~-~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------------aq~G 298 (752)
+.++.+.|++ ..+ ++||++.+| ++++|+|||||||||||++| |++.+. .+.-
T Consensus 3 ~~~~~~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 3 VTNGYFSWGSGLATLSNINIRIPTG-QLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeEEecCCCCcceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 5678888964 344 999999999 99999999999999999999 665321 0112
Q ss_pred eeecCCCC-CCchHHHHH--------------HHHcCCchh-----------hhcCcccchHHHH-HHHHHHHccCCCcE
Q 004463 299 LYLPAKNH-PRLPWFDLI--------------LADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRESL 351 (752)
Q Consensus 299 ~~vP~~~~-~~l~~~d~i--------------~~~ig~~~~-----------i~~~~stlSgg~k-rl~~i~~la~~~~L 351 (752)
.|+|+... ...++.+++ +..+++... +...+.+||+||+ |+.++++++.+|++
T Consensus 82 ~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~i 161 (218)
T cd03290 82 AYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNI 161 (218)
T ss_pred EEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 35565531 112223322 233333222 2356789999999 89999999999999
Q ss_pred EEEeCCCCCCChHhHHHHHHH-HHHHHhcCCcEEEEEecchhHHhhhcccccccCCc
Q 004463 352 VLIDEIGSGTDPSEGVALATS-ILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAA 407 (752)
Q Consensus 352 lLLDEp~~glD~~~~~~L~~a-ll~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~ 407 (752)
|||||||+|||+.....+... ++..+.+.+.|+|++||+.+....|++.+.+.+|+
T Consensus 162 lllDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 162 VFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999999884 77777777899999999988666788888777764
No 280
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.89 E-value=3.9e-23 Score=216.79 Aligned_cols=162 Identities=19% Similarity=0.270 Sum_probs=126.8
Q ss_pred EEcccccccCCeeE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------------------hhhceeecCC
Q 004463 245 TVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLPAK 304 (752)
Q Consensus 245 ~~~~ls~~y~~~~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------aq~G~~vP~~ 304 (752)
+++||++. . .+ ++||++.+| ++++|+|||||||||||+++ |+...- .+...|+|+.
T Consensus 2 ~~~~l~~~--~-~l~~vsl~i~~G-ei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~ 77 (248)
T PRK03695 2 QLNDVAVS--T-RLGPLSAEVRAG-EILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQ 77 (248)
T ss_pred cccccchh--c-eecceEEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEeccc
Confidence 35677765 1 34 999999999 99999999999999999999 665310 0112366665
Q ss_pred CC--CCchH--------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccC-------CCcEEEE
Q 004463 305 NH--PRLPW--------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS-------RESLVLI 354 (752)
Q Consensus 305 ~~--~~l~~--------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~-------~~~LlLL 354 (752)
.. ..+++ ++.++..+|+.+..++.+.+||+||+ |+.++++++. +|+++||
T Consensus 78 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llll 157 (248)
T PRK03695 78 QTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL 157 (248)
T ss_pred CccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence 31 11111 24456677888788899999999999 8999999987 6799999
Q ss_pred eCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 355 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 355 DEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
||||+|||+.....+.. ++..+.+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 158 DEPt~~LD~~~~~~l~~-~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~ 214 (248)
T PRK03695 158 DEPMNSLDVAQQAALDR-LLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLAS 214 (248)
T ss_pred cCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999998 55556666889999999988 6789999999999988654
No 281
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1e-22 Score=220.02 Aligned_cols=169 Identities=18% Similarity=0.197 Sum_probs=128.8
Q ss_pred CCCeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-----------------------
Q 004463 240 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------- 293 (752)
Q Consensus 240 g~~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~----------------------- 293 (752)
+..||.++||++.|++..+ ++||++.+| ++++|+|||||||||||++| |+...
T Consensus 42 ~~~~l~i~nl~~~~~~~~iL~~is~~i~~G-e~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 42 GDAKLSVEDLDVYYGDDHALKGVSMDIPEK-SVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CCceEEEEEEEEEeCCeeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 3458999999999987665 999999999 99999999999999999999 77531
Q ss_pred ---hhhhceeecCCCC-CCchHHHHH----------------------------------HHHcCC----chhhhcCccc
Q 004463 294 ---MSKAGLYLPAKNH-PRLPWFDLI----------------------------------LADIGD----HQSLEQNLST 331 (752)
Q Consensus 294 ---~aq~G~~vP~~~~-~~l~~~d~i----------------------------------~~~ig~----~~~i~~~~st 331 (752)
..+...|+|+... ...++++++ +..+++ ....++.+.+
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 200 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALG 200 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCcccc
Confidence 0012346666532 111222222 222333 2334677899
Q ss_pred chHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-Hhhhccc-ccccCCce
Q 004463 332 FSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKD-TRFENAAT 408 (752)
Q Consensus 332 lSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~-~~i~~g~v 408 (752)
||+||+ |++++++++.+|+||||||||+|||+.....+.. ++..+.+ +.|+|++||+.+. ..+|+++ +.+.+|++
T Consensus 201 LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~-~L~~~~~-~~tiiivtH~~~~i~~~~d~i~~~l~~G~i 278 (305)
T PRK14264 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIED-LIEELAE-EYTVVVVTHNMQQAARISDQTAVFLTGGEL 278 (305)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhc-CCEEEEEEcCHHHHHHhcCEEEEEecCCEE
Confidence 999999 8999999999999999999999999999999988 4455555 4799999999884 6789986 45688888
Q ss_pred eec
Q 004463 409 EFS 411 (752)
Q Consensus 409 ~~~ 411 (752)
..+
T Consensus 279 ~~~ 281 (305)
T PRK14264 279 VEY 281 (305)
T ss_pred EEe
Confidence 654
No 282
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.89 E-value=4e-23 Score=228.41 Aligned_cols=164 Identities=16% Similarity=0.155 Sum_probs=130.7
Q ss_pred cccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------hh--------------------h
Q 004463 247 GSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------MS--------------------K 296 (752)
Q Consensus 247 ~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------~a--------------------q 296 (752)
.++.+.|+...+ ++||++.+| ++++|+||||||||||||+| |++.+ .. +
T Consensus 28 ~~~~~~~g~~~~l~~vsf~i~~G-ei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~ 106 (382)
T TIGR03415 28 EEILDETGLVVGVANASLDIEEG-EICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTH 106 (382)
T ss_pred HHHHHhhCCEEEEEeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcC
Confidence 457778887665 999999999 99999999999999999999 55532 10 1
Q ss_pred hceeecCCCC--CCchHHH---------------------HHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEE
Q 004463 297 AGLYLPAKNH--PRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 352 (752)
Q Consensus 297 ~G~~vP~~~~--~~l~~~d---------------------~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~Ll 352 (752)
...|+|+... ..+++.+ .++..+|+.+..++.+..|||||+ |+.++++++.+|++|
T Consensus 107 ~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 107 RVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 1246666541 1122222 345667787888899999999999 899999999999999
Q ss_pred EEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 353 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 353 LLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
||||||+||||..+..+...+.+...+.+.|+|++||+++. ..+|+++..+.+|.+...
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~ 246 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQH 246 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999996666444458999999999885 579999999999988643
No 283
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.89 E-value=3.3e-23 Score=241.03 Aligned_cols=164 Identities=22% Similarity=0.304 Sum_probs=129.0
Q ss_pred CCeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------hh--hceeecCCCC---
Q 004463 241 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------SK--AGLYLPAKNH--- 306 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------aq--~G~~vP~~~~--- 306 (752)
+.|++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+. .. .-.|+|+...
T Consensus 320 ~~~l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~ 398 (552)
T TIGR03719 320 DKVIEAENLSKGFGDKLLIDDLSFKLPPG-GIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALD 398 (552)
T ss_pred CeEEEEeeEEEEECCeeeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccC
Confidence 458899999999987666 999999999 99999999999999999999 665432 11 1236666521
Q ss_pred CCchHHH-------------------HHHHHcCCch-hhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHh
Q 004463 307 PRLPWFD-------------------LILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 365 (752)
Q Consensus 307 ~~l~~~d-------------------~i~~~ig~~~-~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~ 365 (752)
..+++++ .++..+|+.. ..++.+++|||||+ |++++++++.+|+++||||||+|||+..
T Consensus 399 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~ 478 (552)
T TIGR03719 399 PNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET 478 (552)
T ss_pred CCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Confidence 1222222 3455667753 46889999999999 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccC-Ccee
Q 004463 366 GVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN-AATE 409 (752)
Q Consensus 366 ~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~-g~v~ 409 (752)
...+...+.++ ++++|++|||.+ +..+|++++.+.+ |.+.
T Consensus 479 ~~~l~~~l~~~----~~~viivsHd~~~~~~~~d~i~~l~~~~~~~ 520 (552)
T TIGR03719 479 LRALEEALLEF----AGCAVVISHDRWFLDRIATHILAFEGDSHVE 520 (552)
T ss_pred HHHHHHHHHHC----CCeEEEEeCCHHHHHHhCCEEEEEECCCeEE
Confidence 99998855443 358999999988 5568999988876 3544
No 284
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.89 E-value=5.4e-23 Score=209.04 Aligned_cols=159 Identities=18% Similarity=0.211 Sum_probs=125.3
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCC-------------
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH------------- 306 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~------------- 306 (752)
..|+++||+..|+++.+ |+|.++++| +-++|+|||||||||||+++ +|.+.|.++.
T Consensus 30 ~li~l~~v~v~r~gk~iL~~isW~V~~g-e~W~I~G~NGsGKTTLL~ll--------~~~~~pssg~~~~~G~~~G~~~~ 100 (257)
T COG1119 30 PLIELKNVSVRRNGKKILGDLSWQVNPG-EHWAIVGPNGAGKTTLLSLL--------TGEHPPSSGDVTLLGRRFGKGET 100 (257)
T ss_pred ceEEecceEEEECCEeeccccceeecCC-CcEEEECCCCCCHHHHHHHH--------hcccCCCCCceeeeeeeccCCcc
Confidence 35889999999999998 999999999 89999999999999999999 3333332210
Q ss_pred ----------------------------------CCchH------------HHHHHHHcCCchhhhcCcccchHHHH-HH
Q 004463 307 ----------------------------------PRLPW------------FDLILADIGDHQSLEQNLSTFSGHIS-RI 339 (752)
Q Consensus 307 ----------------------------------~~l~~------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl 339 (752)
..+++ ...++..+|.....+++..+||-||+ |+
T Consensus 101 ~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrv 180 (257)
T COG1119 101 IFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRV 180 (257)
T ss_pred hHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHH
Confidence 01111 22457778888899999999999999 56
Q ss_pred HHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcC--CcEEEEEecchh-HHhhhcccccccCCceee
Q 004463 340 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR--VGLAVVTTHYAD-LSCLKDKDTRFENAATEF 410 (752)
Q Consensus 340 ~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~--~~tviitTH~~~-l~~~a~~~~~i~~g~v~~ 410 (752)
-++++++.+|.|||||||++|||...+..+.. .+..+... +.++|+|||+.+ +-.-.++...+.+|.+..
T Consensus 181 LiaRALv~~P~LLiLDEP~~GLDl~~re~ll~-~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 181 LIARALVKDPELLILDEPAQGLDLIAREQLLN-RLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHH-HHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceee
Confidence 66699999999999999999999999999988 44555544 568999999976 444556666777777654
No 285
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.89 E-value=1e-22 Score=216.61 Aligned_cols=166 Identities=17% Similarity=0.136 Sum_probs=129.6
Q ss_pred eEEEcccccccC--CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh------------------hhhhce
Q 004463 243 EMTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAGL 299 (752)
Q Consensus 243 ~l~~~~ls~~y~--~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------------------~aq~G~ 299 (752)
.++++||++.|+ +.++ ++||+|.+| ++++|+||||+||||||++| |++.. +.+...
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~G-e~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPG-QRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEE
Confidence 467899999994 3444 999999999 99999999999999999999 66521 112235
Q ss_pred eecCCCCC-CchHH--------------HHHHHHcCCchhhhcCccc-----------chHHHH-HHHHHHHccCCCcEE
Q 004463 300 YLPAKNHP-RLPWF--------------DLILADIGDHQSLEQNLST-----------FSGHIS-RIVDILELVSRESLV 352 (752)
Q Consensus 300 ~vP~~~~~-~l~~~--------------d~i~~~ig~~~~i~~~~st-----------lSgg~k-rl~~i~~la~~~~Ll 352 (752)
++|+.... ..++. ...+..+|+...+++.+.. ||+||+ |+.++++++.+|+++
T Consensus 81 ~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~il 160 (275)
T cd03289 81 VIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKIL 160 (275)
T ss_pred EECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 67776521 00111 2334556776666666654 999999 899999999999999
Q ss_pred EEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 353 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 353 LLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
||||||+++|+.....+...+.+ +. .++|+|++||+++....|++++.+.+|.+...
T Consensus 161 llDEpts~LD~~~~~~l~~~l~~-~~-~~~tii~isH~~~~i~~~dri~vl~~G~i~~~ 217 (275)
T cd03289 161 LLDEPSAHLDPITYQVIRKTLKQ-AF-ADCTVILSEHRIEAMLECQRFLVIEENKVRQY 217 (275)
T ss_pred EEECccccCCHHHHHHHHHHHHH-hc-CCCEEEEEECCHHHHHhCCEEEEecCCeEeec
Confidence 99999999999999998885554 43 47899999999986667999999999988665
No 286
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.89 E-value=4.8e-23 Score=239.66 Aligned_cols=163 Identities=18% Similarity=0.202 Sum_probs=126.2
Q ss_pred CeEEEcccccccC-CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh--------hhceeecCCCC--C
Q 004463 242 SEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNH--P 307 (752)
Q Consensus 242 ~~l~~~~ls~~y~-~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a--------q~G~~vP~~~~--~ 307 (752)
.|++++||+++|+ ++++ ++||+|.+| ++++|+||||||||||||+| |++.+.. ..-.|+|+... .
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~G-e~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFPG-AKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCC
Confidence 4889999999997 6555 999999999 99999999999999999999 6654321 11236666542 1
Q ss_pred CchHHHHHH---------------------------------------------------------HHcCCchhhhcCcc
Q 004463 308 RLPWFDLIL---------------------------------------------------------ADIGDHQSLEQNLS 330 (752)
Q Consensus 308 ~l~~~d~i~---------------------------------------------------------~~ig~~~~i~~~~s 330 (752)
.+++.+++. ..+|+. ..++.++
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~ 160 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-PWDADVT 160 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-cccCchh
Confidence 234434331 111221 1467889
Q ss_pred cchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCce
Q 004463 331 TFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAAT 408 (752)
Q Consensus 331 tlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v 408 (752)
+|||||+ |++++++++.+|++|||||||+|||+.....+...+.++ ++++|++||+.+ +..+|++++.+.+|.+
T Consensus 161 ~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiisHd~~~~~~~~d~v~~l~~g~i 236 (552)
T TIGR03719 161 KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTHDRYFLDNVAGWILELDRGRG 236 (552)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcCeEEEEECCEE
Confidence 9999999 899999999999999999999999999999888744432 469999999988 5668999999999886
Q ss_pred ee
Q 004463 409 EF 410 (752)
Q Consensus 409 ~~ 410 (752)
..
T Consensus 237 ~~ 238 (552)
T TIGR03719 237 IP 238 (552)
T ss_pred EE
Confidence 53
No 287
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.89 E-value=5.5e-23 Score=242.13 Aligned_cols=169 Identities=15% Similarity=0.098 Sum_probs=134.3
Q ss_pred CCeEEEcccccccCC-----------eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------------
Q 004463 241 NSEMTVGSLSKGISD-----------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------ 294 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~-----------~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------ 294 (752)
..|++++||++.|+. ..+ ++||++.+| ++++|+||||||||||||+| |++.+.
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~G-e~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~ 389 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPG-ETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRID 389 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECC
Confidence 458999999999961 233 999999999 99999999999999999999 665321
Q ss_pred ----------hhhceeecCCCC----CCchHH----------------------HHHHHHcCCc-hhhhcCcccchHHHH
Q 004463 295 ----------SKAGLYLPAKNH----PRLPWF----------------------DLILADIGDH-QSLEQNLSTFSGHIS 337 (752)
Q Consensus 295 ----------aq~G~~vP~~~~----~~l~~~----------------------d~i~~~ig~~-~~i~~~~stlSgg~k 337 (752)
.+.-.|+|++.. ..+++. ..++..+|+. ...++.+++|||||+
T Consensus 390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqr 469 (623)
T PRK10261 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQR 469 (623)
T ss_pred cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHH
Confidence 011246777641 112221 2345567775 567899999999999
Q ss_pred -HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 338 -RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 338 -rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
|++++++++.+|+||||||||+|||+.....+...+. .+.+ .|.|+|++|||++ +..+|++++.+.+|++...
T Consensus 470 QRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~-~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~ 545 (623)
T PRK10261 470 QRICIARALALNPKVIIADEAVSALDVSIRGQIINLLL-DLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEI 545 (623)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 8999999999999999999999999999999999544 4554 5889999999988 5568999999999988653
No 288
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=6e-23 Score=217.27 Aligned_cols=160 Identities=18% Similarity=0.276 Sum_probs=122.5
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-----h-------------------
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M------------------- 294 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-----~------------------- 294 (752)
.|++++||++.|++.++ ++||++.+| ++++|+||||+|||||||+| |+..+ .
T Consensus 9 ~~l~i~~v~~~~~~~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 9 TVLRTENLNVYYGSFLAVKNVWLDIPKN-QITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred eEEEEeeeEEEECCEEEeecceEEEcCC-CEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 37899999999987665 999999999 99999999999999999999 66431 0
Q ss_pred --hhhceeecCCCCC-CchHHHHH--------------------HHHcCCc----hhhhcCcccchHHHH-HHHHHHHcc
Q 004463 295 --SKAGLYLPAKNHP-RLPWFDLI--------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILELV 346 (752)
Q Consensus 295 --aq~G~~vP~~~~~-~l~~~d~i--------------------~~~ig~~----~~i~~~~stlSgg~k-rl~~i~~la 346 (752)
.+...|+|+.... ..++++++ +..++.. +..++.+.+||+||+ |++++++++
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~ 167 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIA 167 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 0112345554210 01223322 2223332 234667889999999 899999999
Q ss_pred CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhccccccc
Q 004463 347 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE 404 (752)
Q Consensus 347 ~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~ 404 (752)
.+|++|||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.
T Consensus 168 ~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~-~~tvi~vtH~~~~~~~~~d~v~~l~ 224 (264)
T PRK14243 168 VQPEVILMDEPCSALDPISTLRIEE-LMHELKE-QYTIIIVTHNMQQAARVSDMTAFFN 224 (264)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEe
Confidence 9999999999999999999999988 4455555 479999999987 677999998887
No 289
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.3e-22 Score=214.66 Aligned_cols=168 Identities=18% Similarity=0.214 Sum_probs=129.4
Q ss_pred CCeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-----------h------------
Q 004463 241 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----------M------------ 294 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-----------~------------ 294 (752)
.++|+++||+++|+++.+ ++||++.+| ++++|+|||||||||||++| |+..+ +
T Consensus 14 ~~~l~~~~l~~~~~~~~vl~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 14 QQKSEVNKLNFYYGGYQALKNINMMVHEK-QVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 (265)
T ss_pred CceEEEEEEEEEECCeeeeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence 357899999999987665 999999999 99999999999999999999 76531 0
Q ss_pred -----hhhceeecCCCCC-CchHHHHH----------------------HHHcCC----chhhhcCcccchHHHH-HHHH
Q 004463 295 -----SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGD----HQSLEQNLSTFSGHIS-RIVD 341 (752)
Q Consensus 295 -----aq~G~~vP~~~~~-~l~~~d~i----------------------~~~ig~----~~~i~~~~stlSgg~k-rl~~ 341 (752)
.+...|+|+.... ..++.+++ +..++. .+..++....||+|++ |+++
T Consensus 93 ~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 172 (265)
T PRK14252 93 DPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCI 172 (265)
T ss_pred CHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHH
Confidence 0112356665310 11222222 223333 2345677899999999 8999
Q ss_pred HHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 342 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 342 i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
+++++.+|+++||||||+|||+.....+...+ ..+.. +.|+|++||+.+. ..+|++++.+.+|.+...
T Consensus 173 aral~~~p~llllDEPt~gLD~~~~~~l~~~l-~~l~~-~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~ 241 (265)
T PRK14252 173 ARALATDPEILLFDEPTSALDPIATASIEELI-SDLKN-KVTILIVTHNMQQAARVSDYTAYMYMGELIEF 241 (265)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHHh-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999998844 55555 5899999999884 569999999999988654
No 290
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.6e-22 Score=213.37 Aligned_cols=167 Identities=20% Similarity=0.209 Sum_probs=127.6
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------h-----------------
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------S----------------- 295 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------a----------------- 295 (752)
.+++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |+..+- +
T Consensus 6 ~~l~~~~l~~~~~~~~il~~isl~i~~G-e~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGISMDIYRN-KVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred ceEEEEEEEEEECCeEeecceEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 47889999999987665 999999999 99999999999999999999 765410 0
Q ss_pred ---hhceeecCCCC-CCchHHHHH----------------------HHHcCC----chhhhcCcccchHHHH-HHHHHHH
Q 004463 296 ---KAGLYLPAKNH-PRLPWFDLI----------------------LADIGD----HQSLEQNLSTFSGHIS-RIVDILE 344 (752)
Q Consensus 296 ---q~G~~vP~~~~-~~l~~~d~i----------------------~~~ig~----~~~i~~~~stlSgg~k-rl~~i~~ 344 (752)
..-.|+|+... ...++.+++ +..++. .+..++.+.+||+||+ |++++++
T Consensus 85 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 164 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARA 164 (259)
T ss_pred hhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 01234555531 112222222 223343 2345678889999999 8999999
Q ss_pred ccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhccccccc-----CCceeec
Q 004463 345 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE-----NAATEFS 411 (752)
Q Consensus 345 la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~-----~g~v~~~ 411 (752)
++.+|+++||||||+|+|+.....+...+.+ +.+ +.|+|++||+++ +..+|++++.+. +|.+...
T Consensus 165 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~-~~~-~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 165 LAIKPKVLLMDEPCSALDPIATMKVEELIHS-LRS-ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHH-Hhc-CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 9999999999999999999999999985554 554 589999999987 567999998886 4776543
No 291
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.7e-22 Score=211.89 Aligned_cols=166 Identities=20% Similarity=0.258 Sum_probs=127.1
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhh--h--------------h---------
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--L--------------M--------- 294 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~--~--------------~--------- 294 (752)
++.++||++.|++.++ ++||++.+| ++++|+||||+||||||++| |+.. . .
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPKN-SVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 5778999999987665 999999999 99999999999999999999 6642 0 0
Q ss_pred -hhhceeecCCCCC-CchHHHHH----------------------HHHcCCc----hhhhcCcccchHHHH-HHHHHHHc
Q 004463 295 -SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILEL 345 (752)
Q Consensus 295 -aq~G~~vP~~~~~-~l~~~d~i----------------------~~~ig~~----~~i~~~~stlSgg~k-rl~~i~~l 345 (752)
.+...|+|+.... ..+..+++ +..+|+. ...++....||+|++ |+++++++
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 161 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTI 161 (250)
T ss_pred HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 1113466655311 11222222 2233432 234677899999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 346 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 346 a~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+.+|+++||||||+|+|+.....+...+. .+.+ +.|+|++||+.+ +..+|+++..+.+|++..+
T Consensus 162 ~~~p~llllDEP~~gLD~~~~~~l~~~l~-~~~~-~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~ 226 (250)
T PRK14266 162 AVSPEVILMDEPCSALDPISTTKIEDLIH-KLKE-DYTIVIVTHNMQQATRVSKYTSFFLNGEIIES 226 (250)
T ss_pred HcCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhc-CCeEEEEECCHHHHHhhcCEEEEEECCeEEEe
Confidence 99999999999999999999999988554 4554 789999999987 6668888888999988654
No 292
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.89 E-value=5e-23 Score=239.64 Aligned_cols=163 Identities=21% Similarity=0.271 Sum_probs=128.8
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------hh--hceeecCCC---CC
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------SK--AGLYLPAKN---HP 307 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------aq--~G~~vP~~~---~~ 307 (752)
.|++++||++.|+++.+ ++||++.+| ++++|+||||||||||||+| |++.+. .. ...|+|+.. ..
T Consensus 323 ~~l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~ 401 (556)
T PRK11819 323 KVIEAENLSKSFGDRLLIDDLSFSLPPG-GIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDP 401 (556)
T ss_pred eEEEEEeEEEEECCeeeecceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCC
Confidence 48899999999988766 999999999 99999999999999999999 665431 11 123667653 11
Q ss_pred CchHHH-------------------HHHHHcCCch-hhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhH
Q 004463 308 RLPWFD-------------------LILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 366 (752)
Q Consensus 308 ~l~~~d-------------------~i~~~ig~~~-~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~ 366 (752)
.+++++ .++..+|+.. ..++.+++|||||+ |++++++++.+|++|||||||+|||+...
T Consensus 402 ~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~ 481 (556)
T PRK11819 402 NKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETL 481 (556)
T ss_pred CCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 223322 3455567653 56889999999999 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccC-Ccee
Q 004463 367 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN-AATE 409 (752)
Q Consensus 367 ~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~-g~v~ 409 (752)
..+...+.+ + .+++|++|||.+ +..+|++++.+.+ |.+.
T Consensus 482 ~~l~~~l~~-~---~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~ 522 (556)
T PRK11819 482 RALEEALLE-F---PGCAVVISHDRWFLDRIATHILAFEGDSQVE 522 (556)
T ss_pred HHHHHHHHh-C---CCeEEEEECCHHHHHHhCCEEEEEECCCeEE
Confidence 999985544 3 348999999988 5668999988876 5543
No 293
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=8.6e-23 Score=199.09 Aligned_cols=148 Identities=22% Similarity=0.343 Sum_probs=111.1
Q ss_pred EcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCch
Q 004463 246 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQ 323 (752)
Q Consensus 246 ~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~ 323 (752)
++++++.|++..+ ++||++.+| ++++|+||||+||||||+++ +|...|..|...+... .+. .. ...
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g-~~~~i~G~nGsGKStll~~l--------~g~~~~~~G~i~~~~~-~~~-~~-~~~ 69 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAG-EIVALVGPNGSGKSTLLRAI--------AGLLKPTSGEILIDGK-DIA-KL-PLE 69 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHH--------hCCCCCCccEEEECCE-Ecc-cC-CHH
Confidence 4678888876555 999999999 99999999999999999999 7777666653222210 000 00 000
Q ss_pred hhhcCcc---cchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-Hhhhc
Q 004463 324 SLEQNLS---TFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKD 398 (752)
Q Consensus 324 ~i~~~~s---tlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~ 398 (752)
.....++ .||+||+ |+.++++++.+|+++||||||+|+|+.....+...+.+ +.+.+.++|++||+++. ..+|+
T Consensus 70 ~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~-~~~~~~tii~~sh~~~~~~~~~d 148 (157)
T cd00267 70 ELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE-LAEEGRTVIIVTHDPELAELAAD 148 (157)
T ss_pred HHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHH-HHHCCCEEEEEeCCHHHHHHhCC
Confidence 1111122 2999999 78999999999999999999999999999999985555 44447899999999884 45678
Q ss_pred ccccccCC
Q 004463 399 KDTRFENA 406 (752)
Q Consensus 399 ~~~~i~~g 406 (752)
+.+.+.+|
T Consensus 149 ~i~~l~~g 156 (157)
T cd00267 149 RVIVLKDG 156 (157)
T ss_pred EEEEEeCc
Confidence 88877765
No 294
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.89 E-value=9.2e-23 Score=213.77 Aligned_cols=142 Identities=23% Similarity=0.211 Sum_probs=109.5
Q ss_pred EEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------hhhceeecCCCC--CCchHH-----------------HHH
Q 004463 263 KVECETRVVVITGPNTGGKTASMKTL-GLASLM-------SKAGLYLPAKNH--PRLPWF-----------------DLI 315 (752)
Q Consensus 263 ~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------aq~G~~vP~~~~--~~l~~~-----------------d~i 315 (752)
++.+| ++++|+||||||||||||+| |++.+. .+...|+|+... ...++. ..+
T Consensus 21 ~i~~G-e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 99 (246)
T cd03237 21 SISES-EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEI 99 (246)
T ss_pred CcCCC-CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHH
Confidence 45578 99999999999999999999 655432 112235565431 112221 234
Q ss_pred HHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-
Q 004463 316 LADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL- 393 (752)
Q Consensus 316 ~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l- 393 (752)
+..+++.+..++.+++|||||+ |++++++++.+|+++||||||++||+..+..+...+.+...+.+.++|++||+.++
T Consensus 100 l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~ 179 (246)
T cd03237 100 AKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMI 179 (246)
T ss_pred HHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 5567777778899999999999 89999999999999999999999999999999985555444458899999999884
Q ss_pred HhhhcccccccC
Q 004463 394 SCLKDKDTRFEN 405 (752)
Q Consensus 394 ~~~a~~~~~i~~ 405 (752)
..+|++++.+.+
T Consensus 180 ~~~~d~i~~l~~ 191 (246)
T cd03237 180 DYLADRLIVFEG 191 (246)
T ss_pred HHhCCEEEEEcC
Confidence 558998887754
No 295
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.89 E-value=9.4e-23 Score=211.31 Aligned_cols=152 Identities=14% Similarity=0.154 Sum_probs=118.2
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh----h-----------------hhhceeecCCCC----CCchHH
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----M-----------------SKAGLYLPAKNH----PRLPWF 312 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~----~-----------------aq~G~~vP~~~~----~~l~~~ 312 (752)
++||++.+| ++++|+||||+|||||||+| |++.+ . .+.-.|+|++.. ..+++.
T Consensus 4 ~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~ 82 (230)
T TIGR02770 4 DLNLSLKRG-EVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMG 82 (230)
T ss_pred ceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHH
Confidence 578999999 99999999999999999999 77654 1 011235666531 112221
Q ss_pred ---------------------HHHHHHcCCc---hhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHH
Q 004463 313 ---------------------DLILADIGDH---QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV 367 (752)
Q Consensus 313 ---------------------d~i~~~ig~~---~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~ 367 (752)
..++..+++. +..++.+++||+||+ |++++++++.+|+++||||||+|||+....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~ 162 (230)
T TIGR02770 83 NHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQA 162 (230)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHH
Confidence 2234455665 457889999999999 899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 368 ALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 368 ~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
.+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 163 ~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 207 (230)
T TIGR02770 163 RVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVER 207 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9998555433334789999999987 5569999999999988654
No 296
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family.
Probab=99.88 E-value=2e-22 Score=217.01 Aligned_cols=185 Identities=19% Similarity=0.161 Sum_probs=158.3
Q ss_pred CChHHHHHHHhcccccCCCeecCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeEEecCeEEEEEeccc
Q 004463 24 NFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASH 103 (752)
Q Consensus 24 ~~~~~l~~~i~~~i~~~~~~i~d~as~~L~~ir~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~r~~r~vl~vk~~~ 103 (752)
..+.++...++.+++.+++.|+|+||++|+.+|+.++++...+++++.+...+ +....++..+++.++ ||++|+.++
T Consensus 122 ~~l~~~~~~~~~~~~~~~~~i~~~~s~~Ld~lr~~~~~l~~~l~~~~~~~~~~-~~~~~l~~~~~~~~g--~~i~v~~~~ 198 (308)
T smart00533 122 ELLLELLNDDDPLEVNDGGLIKDGFDPELDELREKLEELEEELEELLKKEREE-LGIDSLKLGYNKVHG--YYIEVTKSE 198 (308)
T ss_pred HHHHHHhccCCcccccCCCeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCceEEeEeccEE--EEEEecchh
Confidence 34445555555666666568999999999999999999988888888775443 111234444555443 999999999
Q ss_pred ccCCCCcEEEEEcCCCCEEEecccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004463 104 KYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAG 183 (752)
Q Consensus 104 ~~~~~~g~v~~~s~sg~t~y~ep~~~v~lnn~~~~l~~~e~~ee~~il~~l~~~i~~~~~~l~~~~~~~~~lD~l~a~a~ 183 (752)
...+| |.+++.|++|.++|++|..+++||+++.++..++..++.+|+++|+..+.++...+..+.+++++||+++|+|.
T Consensus 199 ~~~~~-~~~~~~s~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~l~~~~~~i~~lD~l~s~a~ 277 (308)
T smart00533 199 AKKVP-KDFIRRSSLKNTERFTTPELKELENELLEAKEEIERLEKEILRELLEKVLEYLEELRALAEALAELDVLLSLAT 277 (308)
T ss_pred hccCC-hHHHHHhhhcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 77888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcccccccCCCCCCCcceeeEccccCCccc
Q 004463 184 FAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLL 218 (752)
Q Consensus 184 ~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~ 218 (752)
+|.+++||+|.|++++ .+.++++|||++.
T Consensus 278 ~a~~~~~~~P~i~~~~------~l~i~~~rHPlle 306 (308)
T smart00533 278 LAAEGNYVRPEFVDSG------ELEIKNGRHPVLE 306 (308)
T ss_pred HHHHCCCcCCeeCCCC------CEEEeeCCCCccc
Confidence 9999999999998864 5999999999984
No 297
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.1e-22 Score=233.61 Aligned_cols=167 Identities=12% Similarity=0.153 Sum_probs=130.9
Q ss_pred CCeEEEcccccccCCeeE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh--------------------hhhc
Q 004463 241 NSEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAG 298 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------------aq~G 298 (752)
..+++++||++.|. ..+ ++||++.+| ++++|+||||||||||||+| |+..+- .+..
T Consensus 248 ~~~i~~~~l~~~~~-~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 325 (491)
T PRK10982 248 EVILEVRNLTSLRQ-PSIRDVSFDLHKG-EILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGF 325 (491)
T ss_pred CcEEEEeCcccccC-cccceeeEEEeCC-cEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCC
Confidence 45889999999853 233 999999999 99999999999999999999 665321 0112
Q ss_pred eeecCCCC-----CCchH---------------------------HHHHHHHcCCc-hhhhcCcccchHHHH-HHHHHHH
Q 004463 299 LYLPAKNH-----PRLPW---------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILE 344 (752)
Q Consensus 299 ~~vP~~~~-----~~l~~---------------------------~d~i~~~ig~~-~~i~~~~stlSgg~k-rl~~i~~ 344 (752)
.|+|+... ..+++ +..++..+++. +..++.+.+|||||+ |+.++++
T Consensus 326 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a 405 (491)
T PRK10982 326 ALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRW 405 (491)
T ss_pred EEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHH
Confidence 35555420 11111 12334555664 457899999999999 8999999
Q ss_pred ccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 004463 345 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 410 (752)
Q Consensus 345 la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~ 410 (752)
++.+|++|||||||+|+|+.....+.. ++..+.+.|.|+|++|||.+ +..+|++++.+.+|.+..
T Consensus 406 l~~~p~illLDEPt~gLD~~~~~~~~~-~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~ 471 (491)
T PRK10982 406 LLTQPEILMLDEPTRGIDVGAKFEIYQ-LIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAG 471 (491)
T ss_pred HhcCCCEEEEcCCCcccChhHHHHHHH-HHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999998 55667777899999999987 557999999999998864
No 298
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=9.1e-23 Score=199.82 Aligned_cols=154 Identities=21% Similarity=0.330 Sum_probs=130.3
Q ss_pred eEEEcccccccCCee--E--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCC------------
Q 004463 243 EMTVGSLSKGISDFP--V--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH------------ 306 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~--v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~------------ 306 (752)
|+.+++++.+|++++ + ++|+++.+| +.++++||+||||||||+++ .|+..|+.|.
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~g-e~vv~lGpSGcGKTTLLnl~--------AGf~~P~~G~i~l~~r~i~gPg 73 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASG-ELVVVLGPSGCGKTTLLNLI--------AGFVTPSRGSIQLNGRRIEGPG 73 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCC-CEEEEEcCCCccHHHHHHHH--------hcCcCcccceEEECCEeccCCC
Confidence 567889999999877 3 999999999 99999999999999999999 5544454441
Q ss_pred ----------CCchH---H---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcE
Q 004463 307 ----------PRLPW---F---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 351 (752)
Q Consensus 307 ----------~~l~~---~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~L 351 (752)
.-+|| . .+.+..+|+++.-++.+-.|||||+ |+-++++++.+|.+
T Consensus 74 aergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~ 153 (259)
T COG4525 74 AERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQL 153 (259)
T ss_pred ccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcce
Confidence 22333 2 2346778888888999999999999 89999999999999
Q ss_pred EEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhcccccccC
Q 004463 352 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC-LKDKDTRFEN 405 (752)
Q Consensus 352 lLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~-~a~~~~~i~~ 405 (752)
||||||+..+|.-.+..+...+++.+...|..++++||+.+.+- ++++.+.+..
T Consensus 154 LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp 208 (259)
T COG4525 154 LLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSP 208 (259)
T ss_pred EeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecC
Confidence 99999999999999999999999999999999999999988654 6777666644
No 299
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.88 E-value=2.6e-22 Score=224.58 Aligned_cols=159 Identities=19% Similarity=0.244 Sum_probs=135.1
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCC--------------
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH-------------- 306 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~-------------- 306 (752)
.++++||+|+||+..+ ++||++.+| ++++|+|.||+|||||+|++ +|.|.|.+|.
T Consensus 8 ll~~~~i~K~FggV~AL~~v~l~v~~G-EV~aL~GeNGAGKSTLmKiL--------sGv~~p~~G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 8 LLELRGISKSFGGVKALDGVSLTVRPG-EVHALLGENGAGKSTLMKIL--------SGVYPPDSGEILIDGKPVAFSSPR 78 (500)
T ss_pred eeeeecceEEcCCceeeccceeEEeCc-eEEEEecCCCCCHHHHHHHH--------hCcccCCCceEEECCEEccCCCHH
Confidence 5679999999999776 999999999 99999999999999999999 7777666651
Q ss_pred -----------------CCchHHH-------------------------HHHHHcCCchhhhcCcccchHHHHH-HHHHH
Q 004463 307 -----------------PRLPWFD-------------------------LILADIGDHQSLEQNLSTFSGHISR-IVDIL 343 (752)
Q Consensus 307 -----------------~~l~~~d-------------------------~i~~~ig~~~~i~~~~stlSgg~kr-l~~i~ 343 (752)
+.+++.+ .++..+|.....+..+.+||.+++| +.+++
T Consensus 79 ~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIAr 158 (500)
T COG1129 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIAR 158 (500)
T ss_pred HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHH
Confidence 1222222 3455666655588999999999997 55559
Q ss_pred HccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 344 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 344 ~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+++.++.||||||||+.|+..+...|.. +++.|+++|.++|++||.++ +..+||++.++.+|....+
T Consensus 159 Al~~~arllIlDEPTaaLt~~E~~~Lf~-~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~ 226 (500)
T COG1129 159 ALSFDARVLILDEPTAALTVKETERLFD-LIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGT 226 (500)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeee
Confidence 9999999999999999999999999998 88889999999999999976 8889999999999987543
No 300
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.88 E-value=1.5e-22 Score=257.35 Aligned_cols=169 Identities=21% Similarity=0.240 Sum_probs=137.6
Q ss_pred CCeEEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------------------hhh
Q 004463 241 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKA 297 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------aq~ 297 (752)
..|++++||+|.|++ +.+ ++||.+.+| ++++|+||||||||||||+| |++.+- .+.
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~G-Ei~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPG-ECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCC-cEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhh
Confidence 458999999999985 334 999999999 99999999999999999999 665321 111
Q ss_pred ceeecCCCC--CCchH---------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEE
Q 004463 298 GLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 353 (752)
Q Consensus 298 G~~vP~~~~--~~l~~---------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlL 353 (752)
-.|+|+... ..+++ ++.++..+|+.+..++.+++|||||+ |++++++++.+|++||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLL 2093 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVL 2093 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 246777631 11222 22345667888888999999999999 8999999999999999
Q ss_pred EeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 354 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 354 LDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
|||||+|+||..+..+.. ++..+.+.|.+||+|||+++ ...+|+++..+.+|++...
T Consensus 2094 LDEPTsGLDp~sr~~l~~-lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~ 2151 (2272)
T TIGR01257 2094 LDEPTTGMDPQARRMLWN-TIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCL 2151 (2272)
T ss_pred EECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999998 55556666899999999988 5569999999999988765
No 301
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.88 E-value=1.4e-22 Score=233.55 Aligned_cols=164 Identities=18% Similarity=0.238 Sum_probs=130.0
Q ss_pred CCeEEEcccccccCCeeE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------h-------------hhc
Q 004463 241 NSEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S-------------KAG 298 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------a-------------q~G 298 (752)
..|++++|+++. .+ ++||++.+| ++++|+||||||||||||+| |++.+- . ..-
T Consensus 266 ~~~l~~~~l~~~----~l~~isl~i~~G-e~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 266 APVLTVEDLTGE----GFRNISLEVRAG-EILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred CceEEEeCCCCC----CccceeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 347889999852 24 899999999 99999999999999999999 765320 0 112
Q ss_pred eeecCCC-----CCCchH------------------------HHHHHHHcCCc-hhhhcCcccchHHHH-HHHHHHHccC
Q 004463 299 LYLPAKN-----HPRLPW------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVS 347 (752)
Q Consensus 299 ~~vP~~~-----~~~l~~------------------------~d~i~~~ig~~-~~i~~~~stlSgg~k-rl~~i~~la~ 347 (752)
.|+|+.. ...+++ ++.++..+|+. ...++.+++|||||+ |+.++++++.
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~ 420 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEA 420 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhh
Confidence 4677642 111111 22445667776 678899999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 004463 348 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 410 (752)
Q Consensus 348 ~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~ 410 (752)
+|+||||||||+|||+.....+.. ++..+.+.|.++|++|||++ +..+|++++.+.+|.+..
T Consensus 421 ~p~lLlLDEPt~gLD~~~~~~l~~-~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~ 483 (510)
T PRK15439 421 SPQLLIVDEPTRGVDVSARNDIYQ-LIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISG 483 (510)
T ss_pred CCCEEEECCCCcCcChhHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999 55556667899999999988 556999999999998764
No 302
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=5e-22 Score=216.56 Aligned_cols=168 Identities=18% Similarity=0.247 Sum_probs=130.0
Q ss_pred CCeEEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh----------------------
Q 004463 241 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------- 293 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~---------------------- 293 (752)
.+++.++|+++.|.+ .++ ++||+|.+| ++++|+|||||||||||++| |+..+
T Consensus 78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~G-e~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRN-KVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred CceEEEEeeEEEecCCCceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 368999999999953 344 999999999 99999999999999999999 66531
Q ss_pred ----hhhhceeecCCCCC-CchHHHHH----------------------HHHcCC----chhhhcCcccchHHHH-HHHH
Q 004463 294 ----MSKAGLYLPAKNHP-RLPWFDLI----------------------LADIGD----HQSLEQNLSTFSGHIS-RIVD 341 (752)
Q Consensus 294 ----~aq~G~~vP~~~~~-~l~~~d~i----------------------~~~ig~----~~~i~~~~stlSgg~k-rl~~ 341 (752)
+.+.-.|+|+.... ..++.+++ +..+++ ...+.....+||||++ |+++
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~L 236 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCI 236 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHH
Confidence 01123467766421 11222222 233333 2345788899999999 8999
Q ss_pred HHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 342 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 342 i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
+++++.+|++|||||||+|+|+.....+...+ ..+.+ ++|+|++||+++. ..+||+++.+.+|++...
T Consensus 237 ARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i-~~l~~-~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~ 305 (329)
T PRK14257 237 ARAIALEPEVLLMDEPTSALDPIATAKIEELI-LELKK-KYSIIIVTHSMAQAQRISDETVFFYQGWIEEA 305 (329)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999988844 55555 5899999999985 567999999999988653
No 303
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.88 E-value=4.5e-22 Score=212.42 Aligned_cols=169 Identities=17% Similarity=0.084 Sum_probs=124.2
Q ss_pred CCCeEEEcccccccCCeeE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhhh------hceeecCCCCC-Cch
Q 004463 240 ENSEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK------AGLYLPAKNHP-RLP 310 (752)
Q Consensus 240 g~~~l~~~~ls~~y~~~~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~aq------~G~~vP~~~~~-~l~ 310 (752)
+...|+++|+++. +...+ ++||++.+| ++++|+|||||||||||++| |++.+.+- .-.|+|+.... ..+
T Consensus 36 ~~~~l~i~nls~~-~~~vL~~vs~~i~~G-e~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~t 113 (282)
T cd03291 36 DDNNLFFSNLCLV-GAPVLKNINLKIEKG-EMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGT 113 (282)
T ss_pred CCCeEEEEEEEEe-cccceeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccC
Confidence 3456788999885 32233 999999999 99999999999999999999 65543210 01255555310 112
Q ss_pred HHHHH--------------HHHcCCchh-----------hhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChH
Q 004463 311 WFDLI--------------LADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 364 (752)
Q Consensus 311 ~~d~i--------------~~~ig~~~~-----------i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~ 364 (752)
+.+++ +..+++... +....+.||+||+ |+.++++++.+|+++||||||+|||+.
T Consensus 114 v~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~ 193 (282)
T cd03291 114 IKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVF 193 (282)
T ss_pred HHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHH
Confidence 33332 222233222 2233579999999 899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 365 EGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 365 ~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
....+...++..+.. +.++|++||+.+....|++++.+.+|.+.+.
T Consensus 194 ~~~~l~~~ll~~~~~-~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~ 239 (282)
T cd03291 194 TEKEIFESCVCKLMA-NKTRILVTSKMEHLKKADKILILHEGSSYFY 239 (282)
T ss_pred HHHHHHHHHHHHhhC-CCEEEEEeCChHHHHhCCEEEEEECCEEEEE
Confidence 999888766665554 6899999999886678999999999987654
No 304
>PLN03073 ABC transporter F family; Provisional
Probab=99.88 E-value=2.5e-22 Score=238.41 Aligned_cols=165 Identities=19% Similarity=0.152 Sum_probs=122.6
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhh-hhhhhc--eeecCCC-CCCchH---
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-LMSKAG--LYLPAKN-HPRLPW--- 311 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~-~~aq~G--~~vP~~~-~~~l~~--- 311 (752)
.||.++|++++|++..+ ++||+|..| ++++|+||||||||||||+| |... .....| .|+++.. ...++.
T Consensus 176 ~~I~i~nls~~y~~~~ll~~isl~i~~G-e~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~ 254 (718)
T PLN03073 176 KDIHMENFSISVGGRDLIVDASVTLAFG-RHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQC 254 (718)
T ss_pred eeEEEceEEEEeCCCEEEECCEEEECCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHH
Confidence 47899999999987766 999999999 99999999999999999999 4310 000000 1222210 000000
Q ss_pred ---------------------------------------------------------------------HHHHHHHcCCc
Q 004463 312 ---------------------------------------------------------------------FDLILADIGDH 322 (752)
Q Consensus 312 ---------------------------------------------------------------------~d~i~~~ig~~ 322 (752)
...++..+|+.
T Consensus 255 v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~ 334 (718)
T PLN03073 255 VLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFT 334 (718)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCC
Confidence 01122333432
Q ss_pred -hhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcc
Q 004463 323 -QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDK 399 (752)
Q Consensus 323 -~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~ 399 (752)
...++.+++||||++ |++++++++.+|++|||||||+|||+.....|...+.+ .+.|+|++||+.+ +..+|++
T Consensus 335 ~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~----~~~tviivsHd~~~l~~~~d~ 410 (718)
T PLN03073 335 PEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLK----WPKTFIVVSHAREFLNTVVTD 410 (718)
T ss_pred hHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH----cCCEEEEEECCHHHHHHhCCE
Confidence 345778999999999 89999999999999999999999999998888774433 3789999999988 5678999
Q ss_pred cccccCCceeec
Q 004463 400 DTRFENAATEFS 411 (752)
Q Consensus 400 ~~~i~~g~v~~~ 411 (752)
++.+.+|.+..+
T Consensus 411 i~~l~~g~i~~~ 422 (718)
T PLN03073 411 ILHLHGQKLVTY 422 (718)
T ss_pred EEEEECCEEEEe
Confidence 999999887644
No 305
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.88 E-value=3.2e-22 Score=192.29 Aligned_cols=167 Identities=22% Similarity=0.303 Sum_probs=132.6
Q ss_pred eEEEcccccccCC----eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh----------------------
Q 004463 243 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------- 293 (752)
Q Consensus 243 ~l~~~~ls~~y~~----~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~---------------------- 293 (752)
.|+++++++..+. ..| ++++.+.+| +.++|+||+||||||||-.+ ||-.+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~G-e~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~ 84 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRG-ETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCC-ceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence 3455566665542 223 899999999 99999999999999999998 44321
Q ss_pred -hhhhceeecCCC----------CCCchH-------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCC
Q 004463 294 -MSKAGLYLPAKN----------HPRLPW-------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 348 (752)
Q Consensus 294 -~aq~G~~vP~~~----------~~~l~~-------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~ 348 (752)
.+..-.||.++. ++.+|. ...++..+|+.+.+...+.+||||++ |++++++++..
T Consensus 85 ~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~ 164 (228)
T COG4181 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGR 164 (228)
T ss_pred hhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCC
Confidence 111222444442 111111 23468889999999999999999998 99999999999
Q ss_pred CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 004463 349 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 349 ~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~ 410 (752)
|++|+-||||-+||...+..++..+...-.+.|.|.+++|||..++.-|++.+.+.+|+++-
T Consensus 165 P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 165 PDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred CCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 99999999999999999999999777766788999999999999999999999999998753
No 306
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.88 E-value=2.6e-22 Score=211.37 Aligned_cols=154 Identities=19% Similarity=0.217 Sum_probs=117.4
Q ss_pred cccccccCCee-E--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh-h-------------------------
Q 004463 247 GSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-K------------------------- 296 (752)
Q Consensus 247 ~~ls~~y~~~~-v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a-q------------------------- 296 (752)
.+|+++|++.. + ++++ +.+| ++++|+||||||||||||+| |+..+-+ +
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~G-e~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREG-QVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCC-CEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 47889997643 3 8884 8899 99999999999999999999 4443210 0
Q ss_pred -----hc-eeecCCCCCCch------------------HHHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcE
Q 004463 297 -----AG-LYLPAKNHPRLP------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 351 (752)
Q Consensus 297 -----~G-~~vP~~~~~~l~------------------~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~L 351 (752)
.. .++|+.. ...+ .+..++..+|+.+..++.+.+||+||+ |+.++++++.+|++
T Consensus 82 ~~~~~~~i~~~~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~i 160 (255)
T cd03236 82 LLEGDVKVIVKPQYV-DLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADF 160 (255)
T ss_pred hhhcccceeeecchh-ccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 00 1222211 0000 123456677888888899999999999 89999999999999
Q ss_pred EEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-Hhhhccccccc
Q 004463 352 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFE 404 (752)
Q Consensus 352 lLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~ 404 (752)
+||||||+|+|+.....+.. ++..+.+.+.++|++||+++. ..+|+++..+.
T Consensus 161 lllDEPts~LD~~~~~~l~~-~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~ 213 (255)
T cd03236 161 YFFDEPSSYLDIKQRLNAAR-LIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY 213 (255)
T ss_pred EEEECCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC
Confidence 99999999999999999988 555666668899999999884 45899887774
No 307
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.88 E-value=3.4e-22 Score=230.02 Aligned_cols=165 Identities=16% Similarity=0.144 Sum_probs=128.5
Q ss_pred CeEEEcccccccCCeeE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------h-------------hhce
Q 004463 242 SEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S-------------KAGL 299 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------a-------------q~G~ 299 (752)
..+.++|++.. ..+ ++||++.+| ++++|+||||||||||||++ |++.+. . +.-.
T Consensus 256 ~~l~~~~~~~~---~~l~~isl~i~~G-e~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 331 (501)
T PRK11288 256 VRLRLDGLKGP---GLREPISFSVRAG-EIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM 331 (501)
T ss_pred cEEEEeccccC---CcccceeEEEeCC-cEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCE
Confidence 35678888743 234 999999999 99999999999999999999 665321 1 1113
Q ss_pred eecCCC-----CCCchH---------------------------HHHHHHHcCCc-hhhhcCcccchHHHH-HHHHHHHc
Q 004463 300 YLPAKN-----HPRLPW---------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILEL 345 (752)
Q Consensus 300 ~vP~~~-----~~~l~~---------------------------~d~i~~~ig~~-~~i~~~~stlSgg~k-rl~~i~~l 345 (752)
|+|+.. ...+++ +..++..+++. +..++.+.+|||||+ |+.+++++
T Consensus 332 ~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al 411 (501)
T PRK11288 332 LCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWL 411 (501)
T ss_pred EcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHH
Confidence 556542 111111 22345567773 567899999999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 346 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 346 a~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+.+|+||||||||+|||+.....+.. ++..+.+.|.++|++|||++ +..+|++++.+.+|.+.+.
T Consensus 412 ~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~ 477 (501)
T PRK11288 412 SEDMKVILLDEPTRGIDVGAKHEIYN-VIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGE 477 (501)
T ss_pred ccCCCEEEEcCCCCCCCHhHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEE
Confidence 99999999999999999999999998 55556777899999999988 5579999999999987654
No 308
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.88 E-value=2.1e-22 Score=197.92 Aligned_cols=129 Identities=33% Similarity=0.450 Sum_probs=106.3
Q ss_pred eEeeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhh----------hceeecCCCCCCchHHHHHHHHcCCchhhh
Q 004463 257 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSK----------AGLYLPAKNHPRLPWFDLILADIGDHQSLE 326 (752)
Q Consensus 257 ~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq----------~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~ 326 (752)
.+++++.+..+ .+++|||||||||||+|++++++..+++ .|+++|+.. ..+ ++..++
T Consensus 11 ~~~~~i~~~~~-~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~-----i~~~~~------ 77 (162)
T cd03227 11 FVPNDVTFGEG-SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVS-AEL-----IFTRLQ------ 77 (162)
T ss_pred EeccEEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeE-EEE-----ehheee------
Confidence 35778888777 7999999999999999999999999998 888888765 332 333322
Q ss_pred cCcccchHHHH-HHHHHHHccC----CCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccc
Q 004463 327 QNLSTFSGHIS-RIVDILELVS----RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDT 401 (752)
Q Consensus 327 ~~~stlSgg~k-rl~~i~~la~----~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~ 401 (752)
||+|++ ++.++++++. +|+++|||||++||||.++..+..++.+++.+ ++++|++||+.++...+++.+
T Consensus 78 -----lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~~~~d~~~ 151 (162)
T cd03227 78 -----LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELAELADKLI 151 (162)
T ss_pred -----ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHhhhhEE
Confidence 899998 6666666543 88999999999999999999999988888777 889999999999888887766
Q ss_pred ccc
Q 004463 402 RFE 404 (752)
Q Consensus 402 ~i~ 404 (752)
.+.
T Consensus 152 ~l~ 154 (162)
T cd03227 152 HIK 154 (162)
T ss_pred EEE
Confidence 553
No 309
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=6e-22 Score=209.37 Aligned_cols=165 Identities=16% Similarity=0.178 Sum_probs=125.5
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh------h-------------------
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------M------------------- 294 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------~------------------- 294 (752)
.+.++++++.|++..+ ++||++.+| ++++|+||||+|||||||+| |++.+ -
T Consensus 8 ~~~~~~~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 86 (261)
T PRK14263 8 VMDCKLDKIFYGNFMAVRDSHVPIRKN-EITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVV 86 (261)
T ss_pred eEEEEeEEEEeCCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHh
Confidence 3567888999988665 999999999 99999999999999999999 76532 0
Q ss_pred -hhhceeecCCCCC-CchHHHHH--------------------HHHcCCch----hhhcCcccchHHHH-HHHHHHHccC
Q 004463 295 -SKAGLYLPAKNHP-RLPWFDLI--------------------LADIGDHQ----SLEQNLSTFSGHIS-RIVDILELVS 347 (752)
Q Consensus 295 -aq~G~~vP~~~~~-~l~~~d~i--------------------~~~ig~~~----~i~~~~stlSgg~k-rl~~i~~la~ 347 (752)
.+...|+|+.... .+++++++ +..+++.. ..++....||+||+ |++++++++.
T Consensus 87 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~ 166 (261)
T PRK14263 87 VRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIAT 166 (261)
T ss_pred hhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 0112455655321 22333332 33344422 33466789999999 8999999999
Q ss_pred CCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhccccccc--------CCceee
Q 004463 348 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE--------NAATEF 410 (752)
Q Consensus 348 ~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~--------~g~v~~ 410 (752)
+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+++ +..+|++++.+. +|.+..
T Consensus 167 ~p~llllDEPtsgLD~~~~~~l~~~l~-~~~~-~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~ 236 (261)
T PRK14263 167 EPEVLLLDEPCSALDPIATRRVEELMV-ELKK-DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVE 236 (261)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHH-HHhc-CCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEE
Confidence 999999999999999999999998554 4554 689999999988 567999998885 676654
No 310
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=3.7e-22 Score=193.08 Aligned_cols=166 Identities=20% Similarity=0.281 Sum_probs=135.1
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhh--------h--------hhhhceeecCC
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLAS--------L--------MSKAGLYLPAK 304 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~--------~--------~aq~G~~vP~~ 304 (752)
.+.++|+-|.||...| .+++....| +++.|+|.+||||||||+||.++- + ....|-.+|++
T Consensus 6 ~l~v~dlHK~~G~~eVLKGvSL~A~~G-dVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 6 ALEVEDLHKRYGEHEVLKGVSLQANAG-DVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred ceehhHHHhhcccchhhcceeeecCCC-CEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 4678999999998877 999999999 999999999999999999994441 1 12334444544
Q ss_pred CC-------------------CCchHH----------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHH
Q 004463 305 NH-------------------PRLPWF----------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDI 342 (752)
Q Consensus 305 ~~-------------------~~l~~~----------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i 342 (752)
.. +.+++. ..+++.+|+.+..+..+..||||++ |++++
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIA 164 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIA 164 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHH
Confidence 20 111112 2347778998999999999999999 89999
Q ss_pred HHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhcccccccCCceee
Q 004463 343 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC-LKDKDTRFENAATEF 410 (752)
Q Consensus 343 ~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~-~a~~~~~i~~g~v~~ 410 (752)
++++.+|.++|+||||+.|||+--..+.. ++..|.+.|.|.+++||.+.+++ .+.+++.+.+|.++-
T Consensus 165 RaLameP~vmLFDEPTSALDPElVgEVLk-v~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE 232 (256)
T COG4598 165 RALAMEPEVMLFDEPTSALDPELVGEVLK-VMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232 (256)
T ss_pred HHHhcCCceEeecCCcccCCHHHHHHHHH-HHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc
Confidence 99999999999999999999998888887 78889999999999999999876 677777778887654
No 311
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.87 E-value=4.9e-22 Score=203.88 Aligned_cols=148 Identities=17% Similarity=0.129 Sum_probs=111.5
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhhhhcee-------ecCC--C--CCCchHHHHH-----------
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLY-------LPAK--N--HPRLPWFDLI----------- 315 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~aq~G~~-------vP~~--~--~~~l~~~d~i----------- 315 (752)
++||++++| ++++|+||||||||||||+| |++.+. .|.. ++.. . ...+++.+++
T Consensus 5 ~vs~~i~~G-e~~~l~G~NGsGKSTLlk~i~Gl~~~~--sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 5 KTDFVMGYH-EHIGILAAPGSGKTTLTRLLCGLDAPD--EGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCccCC--CCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 789999999 99999999999999999999 444321 1110 0100 0 0112233332
Q ss_pred -------HHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEE
Q 004463 316 -------LADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVT 387 (752)
Q Consensus 316 -------~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviit 387 (752)
...+++....++.++.||+||+ |++++++++.+|+++|||||++++|+.....+...+.+.+.+ .++|++
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~--~~ii~v 159 (213)
T PRK15177 82 DEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQ--KGLIVL 159 (213)
T ss_pred HHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhC--CcEEEE
Confidence 1122344456778899999999 899999999999999999999999999999988866666543 579999
Q ss_pred ecchhH-HhhhcccccccCCceeec
Q 004463 388 THYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 388 TH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
||++.. ..+|++++.+.+|++.+.
T Consensus 160 sH~~~~~~~~~d~i~~l~~G~i~~~ 184 (213)
T PRK15177 160 THNPRLIKEHCHAFGVLLHGKITMC 184 (213)
T ss_pred ECCHHHHHHhcCeeEEEECCeEEEe
Confidence 999884 569999999999988765
No 312
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.87 E-value=3.9e-22 Score=229.51 Aligned_cols=164 Identities=15% Similarity=0.201 Sum_probs=129.6
Q ss_pred CeEEEcccccccCCeeE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------h-------------hhce
Q 004463 242 SEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S-------------KAGL 299 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------a-------------q~G~ 299 (752)
.+++++|+++. .+ ++||++.+| ++++|+||||||||||||+| |++.+. . +.-.
T Consensus 256 ~~l~~~~l~~~----~l~~vsl~i~~G-e~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 330 (501)
T PRK10762 256 VRLKVDNLSGP----GVNDVSFTLRKG-EILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIV 330 (501)
T ss_pred cEEEEeCcccC----CcccceEEEcCC-cEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCE
Confidence 47888999852 24 899999999 99999999999999999999 665321 0 1124
Q ss_pred eecCCCC-----CCchH---------------------------HHHHHHHcCCc-hhhhcCcccchHHHH-HHHHHHHc
Q 004463 300 YLPAKNH-----PRLPW---------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILEL 345 (752)
Q Consensus 300 ~vP~~~~-----~~l~~---------------------------~d~i~~~ig~~-~~i~~~~stlSgg~k-rl~~i~~l 345 (752)
|+|+... ..+++ ++.++..+|+. ...++.+.+|||||+ |+.+++++
T Consensus 331 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al 410 (501)
T PRK10762 331 YISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGL 410 (501)
T ss_pred EecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHH
Confidence 6777631 11111 22345666774 567889999999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 346 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 346 a~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+.+|++|||||||+|||+.....+.. ++..+.+.|.|+|++|||.+ +..+|++++.+.+|.+...
T Consensus 411 ~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 476 (501)
T PRK10762 411 MTRPKVLILDEPTRGVDVGAKKEIYQ-LINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGE 476 (501)
T ss_pred hhCCCEEEEcCCCCCCCHhHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999 55556666899999999988 5679999999999987654
No 313
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.87 E-value=5.4e-22 Score=233.56 Aligned_cols=160 Identities=21% Similarity=0.280 Sum_probs=127.6
Q ss_pred CCeEEEcccccccCCe--eE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCch------
Q 004463 241 NSEMTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP------ 310 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~--~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~------ 310 (752)
.|.++++||+|+|+.. .+ ++|+++++| +.++|+|+||||||||+|++ .|+|.|.+|...+.
T Consensus 469 ~g~I~~~nvsf~y~~~~~~vL~~isL~I~~G-e~vaIvG~SGsGKSTL~KLL--------~gly~p~~G~I~~dg~dl~~ 539 (709)
T COG2274 469 QGEIEFENVSFRYGPDDPPVLEDLSLEIPPG-EKVAIVGRSGSGKSTLLKLL--------LGLYKPQQGRILLDGVDLND 539 (709)
T ss_pred CceEEEEEEEEEeCCCCcchhhceeEEeCCC-CEEEEECCCCCCHHHHHHHH--------hcCCCCCCceEEECCEeHHh
Confidence 4678999999999754 34 999999999 99999999999999999999 55555555421111
Q ss_pred -----------------------HHH------------HH---HHHcCC-----------chhhhcCcccchHHHH-HHH
Q 004463 311 -----------------------WFD------------LI---LADIGD-----------HQSLEQNLSTFSGHIS-RIV 340 (752)
Q Consensus 311 -----------------------~~d------------~i---~~~ig~-----------~~~i~~~~stlSgg~k-rl~ 340 (752)
+.| ++ +...|. +..+...-+.||||+| |++
T Consensus 540 i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrla 619 (709)
T COG2274 540 IDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLA 619 (709)
T ss_pred cCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHH
Confidence 111 11 122233 3344466788999999 899
Q ss_pred HHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 341 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 341 ~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
+|+++..+|++||||||||+||+..-..+...+.+.. .|+|+|++||.......||++++++.|++..+
T Consensus 620 lARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~ 688 (709)
T COG2274 620 LARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQ 688 (709)
T ss_pred HHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEccchHhhhccEEEEccCCceecc
Confidence 9999999999999999999999999988888666542 25899999999999999999999999998765
No 314
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.87 E-value=7.7e-22 Score=229.39 Aligned_cols=169 Identities=17% Similarity=0.169 Sum_probs=128.9
Q ss_pred CeEEEcccccccCC-eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------------------hhhhc
Q 004463 242 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG 298 (752)
Q Consensus 242 ~~l~~~~ls~~y~~-~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------~aq~G 298 (752)
+.++++||+++|++ .++ ++||++++| +.++|+||||||||||++++ |+..+ +.+.-
T Consensus 321 ~~i~~~~v~f~y~~~~~~l~~i~~~i~~G-~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 399 (547)
T PRK10522 321 QTLELRNVTFAYQDNGFSVGPINLTIKRG-ELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLF 399 (547)
T ss_pred ceEEEEEEEEEeCCCCeEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhhe
Confidence 36899999999964 344 999999999 99999999999999999999 44322 01112
Q ss_pred eeecCCCCC---C---------chHHHHHHHHcCCchhhhcC-----cccchHHHH-HHHHHHHccCCCcEEEEeCCCCC
Q 004463 299 LYLPAKNHP---R---------LPWFDLILADIGDHQSLEQN-----LSTFSGHIS-RIVDILELVSRESLVLIDEIGSG 360 (752)
Q Consensus 299 ~~vP~~~~~---~---------l~~~d~i~~~ig~~~~i~~~-----~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~g 360 (752)
.++|++... . -..+..++..++....+..+ -..|||||+ |++++++++.+|+++||||||++
T Consensus 400 ~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~ 479 (547)
T PRK10522 400 SAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAAD 479 (547)
T ss_pred EEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 345544310 0 00122344555555444322 358999999 89999999999999999999999
Q ss_pred CChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 361 TDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 361 lD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
+|+.....+...+.+.+...+.|+|++||+.+....||+++.+.+|++...
T Consensus 480 LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 480 QDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 999999999887776655557899999999988889999999999987644
No 315
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.87 E-value=6.4e-22 Score=251.58 Aligned_cols=168 Identities=23% Similarity=0.299 Sum_probs=136.0
Q ss_pred CCeEEEcccccccC--CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------------------hhh
Q 004463 241 NSEMTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKA 297 (752)
Q Consensus 241 ~~~l~~~~ls~~y~--~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------aq~ 297 (752)
...++++||++.|+ ++.+ ++||++.+| ++++|+||||||||||||+| |++.+. .+.
T Consensus 926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~G-ei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~ 1004 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYEN-QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQS 1004 (2272)
T ss_pred CceEEEEeEEEEecCCCceEEEeeEEEEcCC-cEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhc
Confidence 34789999999995 3444 999999999 99999999999999999999 776431 111
Q ss_pred ceeecCCCC--CCchH---------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEE
Q 004463 298 GLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 353 (752)
Q Consensus 298 G~~vP~~~~--~~l~~---------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlL 353 (752)
-.++|+... ..+++ ++.++..+|+.+..++.+++|||||+ |++++++++.+|++||
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLL 1084 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVV 1084 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 236676641 12222 23456677888888999999999999 8999999999999999
Q ss_pred EeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 354 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 354 LDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
|||||+|+||..+..+.. ++..+. .|.|||++||+++. ..+||++..+.+|.+...
T Consensus 1085 LDEPTSGLDp~sr~~l~~-lL~~l~-~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~ 1141 (2272)
T TIGR01257 1085 LDEPTSGVDPYSRRSIWD-LLLKYR-SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCS 1141 (2272)
T ss_pred EECCCcCCCHHHHHHHHH-HHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999998 455555 48899999999885 458999999999988654
No 316
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.87 E-value=6.7e-22 Score=201.29 Aligned_cols=143 Identities=20% Similarity=0.240 Sum_probs=122.4
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCC------------------CchH---------
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP------------------RLPW--------- 311 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~------------------~l~~--------- 311 (752)
++||++.+| +.++|+|+||||||||||+| +|.+.|..|.. .++.
T Consensus 45 disf~i~~G-e~vGiiG~NGaGKSTLlkli--------aGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~ 115 (249)
T COG1134 45 DISFEIYKG-ERVGIIGHNGAGKSTLLKLI--------AGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGL 115 (249)
T ss_pred CceEEEeCC-CEEEEECCCCCcHHHHHHHH--------hCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHH
Confidence 999999999 99999999999999999999 88888888732 1121
Q ss_pred ------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHh
Q 004463 312 ------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR 378 (752)
Q Consensus 312 ------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~ 378 (752)
++.|.+.-.+++.+++++.++|.||+ |++++.+...+|++|||||..+--|+.-...-.. .+..+.
T Consensus 116 ~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~-rl~e~~ 194 (249)
T COG1134 116 ILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLE-RLNELV 194 (249)
T ss_pred HhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHH-HHHHHH
Confidence 33444444567899999999999999 9999999999999999999999999988777666 445565
Q ss_pred cCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 379 DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 379 ~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+++.|+|++||++. ++.+|++.+++++|.+.++
T Consensus 195 ~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~ 228 (249)
T COG1134 195 EKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRME 228 (249)
T ss_pred HcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEc
Confidence 56799999999988 7789999999999999886
No 317
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.86 E-value=1.2e-21 Score=220.53 Aligned_cols=168 Identities=17% Similarity=0.161 Sum_probs=136.2
Q ss_pred eEEEcccccccCCe-----eE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh---------------------
Q 004463 243 EMTVGSLSKGISDF-----PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 294 (752)
Q Consensus 243 ~l~~~~ls~~y~~~-----~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------------- 294 (752)
+|+++||++.|... .| ++||++.+| ++++|+|-+||||||+.++| |++..-
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~G-E~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPG-EILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCC-cEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 68899999998532 24 999999999 99999999999999999999 666431
Q ss_pred ------hhhceeecCCCCCCchH--------------------------HHHHHHHcCCchhhhc--CcccchHHHH-HH
Q 004463 295 ------SKAGLYLPAKNHPRLPW--------------------------FDLILADIGDHQSLEQ--NLSTFSGHIS-RI 339 (752)
Q Consensus 295 ------aq~G~~vP~~~~~~l~~--------------------------~d~i~~~ig~~~~i~~--~~stlSgg~k-rl 339 (752)
+....++||+....++. ...+|..+|+.+.... .+..|||||+ |+
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv 163 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV 163 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence 12235677775333221 1234667777666655 9999999999 88
Q ss_pred HHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 340 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 340 ~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
.++++++.+|+|||+||||++||+.....+..++.+...+.|.++|++|||+. +..+||++.++.+|.++-.
T Consensus 164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~ 236 (539)
T COG1123 164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVET 236 (539)
T ss_pred HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEe
Confidence 89999999999999999999999999999999666655577999999999999 5669999999999988654
No 318
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.86 E-value=1.2e-21 Score=228.20 Aligned_cols=168 Identities=17% Similarity=0.168 Sum_probs=127.5
Q ss_pred CeEEEcccccccCCe-----eE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------
Q 004463 242 SEMTVGSLSKGISDF-----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------- 294 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~-----~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------- 294 (752)
+.++++||+++|++. ++ ++||++++| ++++|+||||||||||++++ |+..+-
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G-~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~ 414 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQG-DIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDY 414 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence 468999999999752 34 999999999 99999999999999999999 333210
Q ss_pred hhhceeecCCCCC---Cc----------hHHHHHHHHcCCchhhhc------CcccchHHHH-HHHHHHHccCCCcEEEE
Q 004463 295 SKAGLYLPAKNHP---RL----------PWFDLILADIGDHQSLEQ------NLSTFSGHIS-RIVDILELVSRESLVLI 354 (752)
Q Consensus 295 aq~G~~vP~~~~~---~l----------~~~d~i~~~ig~~~~i~~------~~stlSgg~k-rl~~i~~la~~~~LlLL 354 (752)
...-.++|++... .+ .-+..++...++.+.+.. ....|||||+ |++++++++.+|+++||
T Consensus 415 ~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ilil 494 (555)
T TIGR01194 415 RDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLF 494 (555)
T ss_pred HhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 0111233433210 00 001234455565554432 2368999999 89999999999999999
Q ss_pred eCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 004463 355 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 355 DEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~ 410 (752)
||||+++|+.....+...+++.+...+.|+|++||+.+....||+++.+++|++..
T Consensus 495 DE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~ 550 (555)
T TIGR01194 495 DEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550 (555)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999988777666566899999999998778999999999998754
No 319
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.86 E-value=9.6e-22 Score=202.96 Aligned_cols=147 Identities=20% Similarity=0.248 Sum_probs=114.6
Q ss_pred EEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------h-------hhceeecCCCCC----CchH-----------
Q 004463 262 IKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S-------KAGLYLPAKNHP----RLPW----------- 311 (752)
Q Consensus 262 l~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------a-------q~G~~vP~~~~~----~l~~----------- 311 (752)
|++.+| ++++|+||||||||||||++ |+..+. . +.-.|+|+.... .+++
T Consensus 1 l~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 79 (223)
T TIGR03771 1 LSADKG-ELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGH 79 (223)
T ss_pred CccCCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccc
Confidence 356789 99999999999999999999 655421 0 112466665311 1111
Q ss_pred --------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHH
Q 004463 312 --------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 376 (752)
Q Consensus 312 --------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~ 376 (752)
+..++..+++.+..++.+.+||+||+ |++++++++.+|+++||||||+|||+.....+...+ ..
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l-~~ 158 (223)
T TIGR03771 80 IGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELF-IE 158 (223)
T ss_pred cccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HH
Confidence 22335566777778889999999999 899999999999999999999999999999999954 55
Q ss_pred HhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 377 LRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 377 l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+.+.+.|+|++||+.+ +..+|++++.+ +|.+...
T Consensus 159 ~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~ 193 (223)
T TIGR03771 159 LAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIAD 193 (223)
T ss_pred HHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEee
Confidence 6666889999999988 66789998888 7887643
No 320
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=9.4e-22 Score=188.57 Aligned_cols=154 Identities=26% Similarity=0.323 Sum_probs=121.1
Q ss_pred CCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhh-hhh-------------------hhhceeecCCC------
Q 004463 254 SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLA-SLM-------------------SKAGLYLPAKN------ 305 (752)
Q Consensus 254 ~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli-~~~-------------------aq~G~~vP~~~------ 305 (752)
++..+ ++||.+.+| ++++||||+|||||||||+++.+ .+- .|-..|+.+.+
T Consensus 14 ~~a~il~~isl~v~~G-e~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~t 92 (223)
T COG4619 14 GDAKILNNISLSVRAG-EFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDT 92 (223)
T ss_pred CCCeeecceeeeecCC-ceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccc
Confidence 44455 999999999 99999999999999999999433 211 11111221111
Q ss_pred ---CCCchH-----------HHHHHHHcCCchh-hhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHH
Q 004463 306 ---HPRLPW-----------FDLILADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVAL 369 (752)
Q Consensus 306 ---~~~l~~-----------~d~i~~~ig~~~~-i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L 369 (752)
+..+|+ +-.++++++..+. +.+++..||||++ |+++++.+..-|.+|||||||+.||+.....+
T Consensus 93 VeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~i 172 (223)
T COG4619 93 VEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI 172 (223)
T ss_pred hhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHH
Confidence 011221 3456788887665 5788899999999 89999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCce
Q 004463 370 ATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAAT 408 (752)
Q Consensus 370 ~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v 408 (752)
...|.+++.++...++.+|||.+- .+.+++++.+..|+.
T Consensus 173 e~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 173 EEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred HHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 998888888889999999999885 678999988888765
No 321
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.86 E-value=1.5e-21 Score=226.94 Aligned_cols=168 Identities=24% Similarity=0.244 Sum_probs=127.8
Q ss_pred CeEEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhh
Q 004463 242 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 297 (752)
Q Consensus 242 ~~l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~ 297 (752)
+.++++|++++|++ .++ ++||++++| +.++|+||||||||||++++ |+..+- .+.
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G-~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~ 393 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAG-EALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKH 393 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhh
Confidence 46899999999964 344 999999999 99999999999999999999 554321 122
Q ss_pred ceeecCCCCC-CchHHHHH------------------------HHHc--CCchhhhcCcccchHHHH-HHHHHHHccCCC
Q 004463 298 GLYLPAKNHP-RLPWFDLI------------------------LADI--GDHQSLEQNLSTFSGHIS-RIVDILELVSRE 349 (752)
Q Consensus 298 G~~vP~~~~~-~l~~~d~i------------------------~~~i--g~~~~i~~~~stlSgg~k-rl~~i~~la~~~ 349 (752)
-.++|++... .-++.+++ +..+ |.+..+.....+|||||+ |++++++++.+|
T Consensus 394 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~ 473 (544)
T TIGR01842 394 IGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDP 473 (544)
T ss_pred eEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCC
Confidence 3456665410 00122222 1122 223334556788999999 899999999999
Q ss_pred cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 350 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 350 ~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
+++||||||+|+|+.....+...+. .+...+.|+|++||+.+....||+++.+.+|++...
T Consensus 474 ~ililDEpts~LD~~~~~~i~~~l~-~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~ 534 (544)
T TIGR01842 474 KLVVLDEPNSNLDEEGEQALANAIK-ALKARGITVVVITHRPSLLGCVDKILVLQDGRIARF 534 (544)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHH-HHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEee
Confidence 9999999999999999999988554 455457899999999987788999999999987543
No 322
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.86 E-value=1.5e-21 Score=214.60 Aligned_cols=157 Identities=20% Similarity=0.277 Sum_probs=135.7
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCC--------------
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH-------------- 306 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~-------------- 306 (752)
.+++.+++|.|++... ++||++.+| ++.+|+|.||+||||||+++ +|+|.|.+|.
T Consensus 4 ~l~~~~itK~f~~~~And~V~l~v~~G-eIHaLLGENGAGKSTLm~iL--------~G~~~P~~GeI~v~G~~v~~~sP~ 74 (501)
T COG3845 4 ALEMRGITKRFPGVVANDDVSLSVKKG-EIHALLGENGAGKSTLMKIL--------FGLYQPDSGEIRVDGKEVRIKSPR 74 (501)
T ss_pred eEEEeccEEEcCCEEecCceeeeecCC-cEEEEeccCCCCHHHHHHHH--------hCcccCCcceEEECCEEeccCCHH
Confidence 4678999999997555 899999999 99999999999999999999 7877777762
Q ss_pred -----------------CCchHHH------------------------HHHHHcCCchhhhcCcccchHHHH-HHHHHHH
Q 004463 307 -----------------PRLPWFD------------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILE 344 (752)
Q Consensus 307 -----------------~~l~~~d------------------------~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~ 344 (752)
..+++++ .+..++|+.=+.+..++.||.|++ |+.++.+
T Consensus 75 dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKa 154 (501)
T COG3845 75 DAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKA 154 (501)
T ss_pred HHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHH
Confidence 1122222 345566777788899999999998 7888899
Q ss_pred ccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCcee
Q 004463 345 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 409 (752)
Q Consensus 345 la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~ 409 (752)
+..+++||||||||+-|-|.+...|.. +++.|.+.|.|||++||-+. ..++||+..++..|++.
T Consensus 155 Lyr~a~iLILDEPTaVLTP~E~~~lf~-~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvv 219 (501)
T COG3845 155 LYRGARLLILDEPTAVLTPQEADELFE-ILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219 (501)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEE
Confidence 999999999999999999999999999 88889999999999999965 77899999999999874
No 323
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=1.5e-21 Score=185.86 Aligned_cols=165 Identities=17% Similarity=0.235 Sum_probs=133.2
Q ss_pred EEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhh--------------------------
Q 004463 244 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMS-------------------------- 295 (752)
Q Consensus 244 l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~a-------------------------- 295 (752)
|.++|+++.||...+ +++|+.+.| +.+++.||+|+|||||||++.|+-.-.
T Consensus 3 irv~~in~~yg~~q~lfdi~l~~~~g-etlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 3 IQLNGINCFYGAHQALFDITLDCPEG-ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred eEEcccccccccchheeeeeecCCCC-CEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence 578999999998665 899999999 999999999999999999996653210
Q ss_pred -hhceeecCCC--CCCchHHH----------------------HHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCC
Q 004463 296 -KAGLYLPAKN--HPRLPWFD----------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE 349 (752)
Q Consensus 296 -q~G~~vP~~~--~~~l~~~d----------------------~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~ 349 (752)
..| .|.+.- .+.+++++ .++.++.+.+..++.+-.||||++ |++++++++.+|
T Consensus 82 ~~vg-mvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkp 160 (242)
T COG4161 82 RNVG-MVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEP 160 (242)
T ss_pred Hhhh-hhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCC
Confidence 111 111111 01222222 346677788889999999999998 899999999999
Q ss_pred cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhcccccccCCceeec
Q 004463 350 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC-LKDKDTRFENAATEFS 411 (752)
Q Consensus 350 ~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~-~a~~~~~i~~g~v~~~ 411 (752)
.+||+||||+.|||+-...+.. |++.|...|.|-+++||..+++. .+.+++.+++|+++-.
T Consensus 161 qvllfdeptaaldpeitaqvv~-iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~ 222 (242)
T COG4161 161 QVLLFDEPTAALDPEITAQIVS-IIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred cEEeecCcccccCHHHHHHHHH-HHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEee
Confidence 9999999999999999888887 88889999999999999998654 8899999999998654
No 324
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.86 E-value=1.8e-21 Score=228.15 Aligned_cols=166 Identities=14% Similarity=0.129 Sum_probs=126.2
Q ss_pred CeEEEcccccccCC-eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhhc
Q 004463 242 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 298 (752)
Q Consensus 242 ~~l~~~~ls~~y~~-~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~G 298 (752)
+.++++||+++|++ .++ ++|+++++| +.++|+||||||||||+|++ |+..+- .+.-
T Consensus 333 ~~I~~~~vsf~y~~~~~iL~~inl~i~~G-~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 411 (588)
T PRK13657 333 GAVEFDDVSFSYDNSRQGVEDVSFEAKPG-QTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNI 411 (588)
T ss_pred CeEEEEEEEEEeCCCCceecceeEEECCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 35889999999975 445 999999999 99999999999999999999 444321 1233
Q ss_pred eeecCCCCC-CchHHHH---------------HHHHcCCch-----------hhhcCcccchHHHH-HHHHHHHccCCCc
Q 004463 299 LYLPAKNHP-RLPWFDL---------------ILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRES 350 (752)
Q Consensus 299 ~~vP~~~~~-~l~~~d~---------------i~~~ig~~~-----------~i~~~~stlSgg~k-rl~~i~~la~~~~ 350 (752)
.|+|++... .-++.++ .+...++.+ .+......||||++ |++++++++.+|+
T Consensus 412 ~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~ 491 (588)
T PRK13657 412 AVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPP 491 (588)
T ss_pred EEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 466665410 0011222 222233222 23344567999999 8999999999999
Q ss_pred EEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 004463 351 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 351 LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~ 410 (752)
++||||||++||+.....+...+.+ +. .++|+|++||+.+....||+++.+.+|++..
T Consensus 492 iliLDEpts~LD~~t~~~i~~~l~~-~~-~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~ 549 (588)
T PRK13657 492 ILILDEATSALDVETEAKVKAALDE-LM-KGRTTFIIAHRLSTVRNADRILVFDNGRVVE 549 (588)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHH-Hh-cCCEEEEEEecHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999886654 33 3689999999999888999999999998763
No 325
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.86 E-value=2e-21 Score=218.87 Aligned_cols=171 Identities=16% Similarity=0.129 Sum_probs=134.8
Q ss_pred CCCeEEEcccccccCC------------eeE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhhh---------
Q 004463 240 ENSEMTVGSLSKGISD------------FPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK--------- 296 (752)
Q Consensus 240 g~~~l~~~~ls~~y~~------------~~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~aq--------- 296 (752)
+..+++++||++.|.. +.| ++||++.+| ++++|+|++|||||||.|+| ||+.+-+-
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~G-E~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~ 355 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREG-ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDL 355 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccc
Confidence 3456889999999973 113 999999999 99999999999999999999 55543110
Q ss_pred ------------hceeecCCCCCC----chH----------------------HHHHHHHcCCch-hhhcCcccchHHHH
Q 004463 297 ------------AGLYLPAKNHPR----LPW----------------------FDLILADIGDHQ-SLEQNLSTFSGHIS 337 (752)
Q Consensus 297 ------------~G~~vP~~~~~~----l~~----------------------~d~i~~~ig~~~-~i~~~~stlSgg~k 337 (752)
.-.++.++.+.. .++ ++.++..+|+.. .+++.+..||||++
T Consensus 356 ~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQr 435 (539)
T COG1123 356 DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQR 435 (539)
T ss_pred ccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchh
Confidence 001112221111 111 334577778776 58999999999999
Q ss_pred -HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 338 -RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 338 -rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
|+++|++++.+|.+|++|||++.||+.....+.+.+.+...+.|.|.||+|||+. ...+||++..|.+|.++-.
T Consensus 436 QRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~ 511 (539)
T COG1123 436 QRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEE 511 (539)
T ss_pred HHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEe
Confidence 9999999999999999999999999999999999776666667999999999999 5569999999999988654
No 326
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.8e-21 Score=193.52 Aligned_cols=168 Identities=23% Similarity=0.269 Sum_probs=132.2
Q ss_pred CeEEEcccccccCCe-eE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh---------------------hhh
Q 004463 242 SEMTVGSLSKGISDF-PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------MSK 296 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~-~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~---------------------~aq 296 (752)
.||+++||..+.+++ .+ .+|+++..| ++.+|.||||||||||.++| |.=.| .|+
T Consensus 2 ~~L~I~dLhv~v~~~keILkgvnL~v~~G-EvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEILKGVNLTVKEG-EVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred ceeEEeeeEEEecCchhhhcCcceeEcCC-cEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 478899999999874 66 999999999 99999999999999999999 33221 467
Q ss_pred hceeecCCCCCCchH---------------------------HHHHHHHcCCch-hhhcCcc-cchHHHH-HHHHHHHcc
Q 004463 297 AGLYLPAKNHPRLPW---------------------------FDLILADIGDHQ-SLEQNLS-TFSGHIS-RIVDILELV 346 (752)
Q Consensus 297 ~G~~vP~~~~~~l~~---------------------------~d~i~~~ig~~~-~i~~~~s-tlSgg~k-rl~~i~~la 346 (752)
.|+|+..+..+.++. ....++.+++.. .+++.+. .||||++ |.-++..++
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~ 160 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLL 160 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHh
Confidence 787764333233331 112344555544 6677775 5999999 677777889
Q ss_pred CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhh--cccccccCCceeec
Q 004463 347 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLK--DKDTRFENAATEFS 411 (752)
Q Consensus 347 ~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a--~~~~~i~~g~v~~~ 411 (752)
.+|+++|||||-||||...-..++. .++.+++.+..+|++|||..+..+. |.+..+.+|++...
T Consensus 161 lePkl~ILDE~DSGLDIdalk~V~~-~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~s 226 (251)
T COG0396 161 LEPKLAILDEPDSGLDIDALKIVAE-GINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKS 226 (251)
T ss_pred cCCCEEEecCCCcCccHHHHHHHHH-HHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEec
Confidence 9999999999999999999888888 6677888899999999999987765 77777888888765
No 327
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.86 E-value=2.1e-21 Score=231.59 Aligned_cols=165 Identities=16% Similarity=0.189 Sum_probs=126.2
Q ss_pred CeEEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------------------hhhh
Q 004463 242 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 297 (752)
Q Consensus 242 ~~l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------~aq~ 297 (752)
+.++++||+++|++ .++ ++||++++| +.++|+||||||||||+|++ |+..+ +.+.
T Consensus 450 ~~I~~~nvsf~Y~~~~~~vL~~isl~i~~G-e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 528 (686)
T TIGR03797 450 GAIEVDRVTFRYRPDGPLILDDVSLQIEPG-EFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQ 528 (686)
T ss_pred ceEEEEEEEEEcCCCCccceeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhc
Confidence 46899999999953 345 999999999 99999999999999999999 44432 1122
Q ss_pred ceeecCCCCC-CchHHH--------------HHHHHcCCchhh-----------hcCcccchHHHH-HHHHHHHccCCCc
Q 004463 298 GLYLPAKNHP-RLPWFD--------------LILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRES 350 (752)
Q Consensus 298 G~~vP~~~~~-~l~~~d--------------~i~~~ig~~~~i-----------~~~~stlSgg~k-rl~~i~~la~~~~ 350 (752)
-.++||+... .-++.+ .++...|..+.+ ...-+.|||||+ |++++++++.+|+
T Consensus 529 i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~ 608 (686)
T TIGR03797 529 LGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPR 608 (686)
T ss_pred cEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 3456665410 001122 223334444333 234578999999 8999999999999
Q ss_pred EEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 351 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 351 LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
+|||||||+++|+.....+...+.+. +.|+|++||..+....||+++.+++|++..+
T Consensus 609 iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~ 665 (686)
T TIGR03797 609 ILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQ 665 (686)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999888865543 6799999999998888999999999988654
No 328
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.86 E-value=1.5e-21 Score=233.58 Aligned_cols=165 Identities=18% Similarity=0.187 Sum_probs=126.7
Q ss_pred CeEEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------------------hhhh
Q 004463 242 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 297 (752)
Q Consensus 242 ~~l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------~aq~ 297 (752)
+.++++||+++|++ +++ ++||++++| +.++|+||||||||||+|++ |+..+ +.+.
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~G-e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 554 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLIENFSLTLQPG-QRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANS 554 (710)
T ss_pred CeEEEEEEEEecCCCCCCcccceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhh
Confidence 56899999999974 345 999999999 99999999999999999999 55432 1122
Q ss_pred ceeecCCCCC-CchHHHH---------------HHHHcCCch-----------hhhcCcccchHHHH-HHHHHHHccCCC
Q 004463 298 GLYLPAKNHP-RLPWFDL---------------ILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRE 349 (752)
Q Consensus 298 G~~vP~~~~~-~l~~~d~---------------i~~~ig~~~-----------~i~~~~stlSgg~k-rl~~i~~la~~~ 349 (752)
-.++||+... .-++.++ .+...|..+ .+...-..|||||+ |++++++++.+|
T Consensus 555 i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p 634 (710)
T TIGR03796 555 VAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNP 634 (710)
T ss_pred eeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCC
Confidence 3466666410 0011122 222333332 23345578999999 899999999999
Q ss_pred cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 350 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 350 ~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
+++||||||++||+.....+...+.+ .++|+|++||..+....||+++.+++|++...
T Consensus 635 ~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~ 692 (710)
T TIGR03796 635 SILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQR 692 (710)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEe
Confidence 99999999999999999888886543 48899999999998888999999999988654
No 329
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.86 E-value=2.5e-21 Score=226.29 Aligned_cols=167 Identities=18% Similarity=0.174 Sum_probs=129.0
Q ss_pred CeEEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhh
Q 004463 242 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 297 (752)
Q Consensus 242 ~~l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~ 297 (752)
+.++++||+++|++ .++ ++||++++| +.++|+||||||||||++++ |+..+. .+.
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G-~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 415 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAG-EKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQA 415 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhh
Confidence 46899999999964 344 999999999 99999999999999999999 444321 122
Q ss_pred ceeecCCCCC-CchH---------------HHHHHHHcCCchhhhc----------CcccchHHHH-HHHHHHHccCCCc
Q 004463 298 GLYLPAKNHP-RLPW---------------FDLILADIGDHQSLEQ----------NLSTFSGHIS-RIVDILELVSRES 350 (752)
Q Consensus 298 G~~vP~~~~~-~l~~---------------~d~i~~~ig~~~~i~~----------~~stlSgg~k-rl~~i~~la~~~~ 350 (752)
-.++|++... .-++ +...+...+..+.+++ ....|||||+ |++++++++.+|+
T Consensus 416 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ 495 (574)
T PRK11160 416 ISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAP 495 (574)
T ss_pred eeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 3356655310 0011 2233455566555544 5678999999 8999999999999
Q ss_pred EEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 351 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 351 LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
++||||||+++|+.+...+..++.+. . .+.|+|++||+++....||+++.+++|++...
T Consensus 496 ililDE~ts~lD~~t~~~i~~~l~~~-~-~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~ 554 (574)
T PRK11160 496 LLLLDEPTEGLDAETERQILELLAEH-A-QNKTVLMITHRLTGLEQFDRICVMDNGQIIEQ 554 (574)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHH-c-CCCEEEEEecChhHHHhCCEEEEEeCCeEEEe
Confidence 99999999999999999998866553 3 37899999999987778999999999987643
No 330
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=3.6e-21 Score=185.27 Aligned_cols=165 Identities=22% Similarity=0.254 Sum_probs=121.6
Q ss_pred EEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh-------------------------
Q 004463 244 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------------------------- 295 (752)
Q Consensus 244 l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a------------------------- 295 (752)
+.+.++|+.|++..- +++|.+.+| ++++|+|.+||||||||++| +-+.+-+
T Consensus 7 L~V~~lsk~Yg~~~gc~~vsF~l~PG-eVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~ 85 (258)
T COG4107 7 LSVSGLSKLYGPGKGCRDVSFDLYPG-EVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRR 85 (258)
T ss_pred eeehhhhhhhCCCcCccccceeecCC-cEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHH
Confidence 457899999987543 999999999 99999999999999999999 2221100
Q ss_pred ----hhceee---cCCC-------CCCch---------HHH-------HHHHHcCC-chhhhcCcccchHHHH-HHHHHH
Q 004463 296 ----KAGLYL---PAKN-------HPRLP---------WFD-------LILADIGD-HQSLEQNLSTFSGHIS-RIVDIL 343 (752)
Q Consensus 296 ----q~G~~v---P~~~-------~~~l~---------~~d-------~i~~~ig~-~~~i~~~~stlSgg~k-rl~~i~ 343 (752)
..| || |.+| ...++ .+. .++..+.+ .+.++..+.+|||||+ |+.+++
T Consensus 86 L~RTeWG-~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiAR 164 (258)
T COG4107 86 LLRTEWG-FVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIAR 164 (258)
T ss_pred Hhhhccc-eeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHH
Confidence 011 11 1111 00111 011 12333332 3457788999999999 899999
Q ss_pred HccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhcccccccCCceee
Q 004463 344 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC-LKDKDTRFENAATEF 410 (752)
Q Consensus 344 ~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~-~a~~~~~i~~g~v~~ 410 (752)
.+++.|.|+++||||.|||..-.+.|...+-....+-+..++++|||+.... ++++...++.|.+.-
T Consensus 165 nLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve 232 (258)
T COG4107 165 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232 (258)
T ss_pred HhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence 9999999999999999999999999998444444566889999999999776 677777888887753
No 331
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.86 E-value=2.6e-21 Score=226.78 Aligned_cols=166 Identities=15% Similarity=0.164 Sum_probs=124.5
Q ss_pred CeEEEccccccc-CCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh------------------hhhhce
Q 004463 242 SEMTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAGL 299 (752)
Q Consensus 242 ~~l~~~~ls~~y-~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------------------~aq~G~ 299 (752)
+.++++||++.| +++++ ++||++++| +.++|+||||||||||++++ |+.+. +.+.-.
T Consensus 348 ~~i~~~~vsf~~~~~~~vL~~i~l~i~~G-~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 426 (588)
T PRK11174 348 VTIEAEDLEILSPDGKTLAGPLNFTLPAG-QRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLS 426 (588)
T ss_pred ceEEEEeeEEeccCCCeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheE
Confidence 358899999755 55555 999999999 99999999999999999999 44411 112234
Q ss_pred eecCCCCC-CchHHHH---------------HHHHc-----------CCchhhhcCcccchHHHH-HHHHHHHccCCCcE
Q 004463 300 YLPAKNHP-RLPWFDL---------------ILADI-----------GDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 351 (752)
Q Consensus 300 ~vP~~~~~-~l~~~d~---------------i~~~i-----------g~~~~i~~~~stlSgg~k-rl~~i~~la~~~~L 351 (752)
|+||+... .-++.++ .+... |.+..+...-..|||||+ |+++|++++.+|++
T Consensus 427 ~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~I 506 (588)
T PRK11174 427 WVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQL 506 (588)
T ss_pred EecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 56665410 0011122 22222 223334455578999999 89999999999999
Q ss_pred EEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 004463 352 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 352 lLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~ 410 (752)
+||||||++||+.....+..++.+ +. .+.|+|++||.++....||+++.+++|++..
T Consensus 507 liLDE~TSaLD~~te~~i~~~l~~-~~-~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e 563 (588)
T PRK11174 507 LLLDEPTASLDAHSEQLVMQALNA-AS-RRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQ 563 (588)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHH-Hh-CCCEEEEEecChHHHHhCCEEEEEeCCeEee
Confidence 999999999999999999886654 43 3689999999999888899999999998753
No 332
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.86 E-value=3e-21 Score=228.26 Aligned_cols=167 Identities=20% Similarity=0.273 Sum_probs=135.6
Q ss_pred eEEEcccccccCC----eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh---------------------
Q 004463 243 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 294 (752)
Q Consensus 243 ~l~~~~ls~~y~~----~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------------- 294 (752)
|++++|+++.|++ ..+ ++||++.+| ++++|+||||||||||||++ |+..+-
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAG-EMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 7889999999963 234 999999999 99999999999999999999 665320
Q ss_pred --hhhceeecCCCCC--CchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCC
Q 004463 295 --SKAGLYLPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR 348 (752)
Q Consensus 295 --aq~G~~vP~~~~~--~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~ 348 (752)
.+...|+|+.... .++.. ..++..+|+.+..++.+.+||+||+ |+.++++++.+
T Consensus 83 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~ 162 (648)
T PRK10535 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNG 162 (648)
T ss_pred HHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 1123466665421 12222 2235566777788899999999999 89999999999
Q ss_pred CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 349 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 349 ~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
|++|||||||+|||+.....+.. +++.+.+.+.|+|++||+.++...|++.+.+.+|++...
T Consensus 163 P~lLllDEP~~gLD~~s~~~l~~-ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~ 224 (648)
T PRK10535 163 GQVILADEPTGALDSHSGEEVMA-ILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRN 224 (648)
T ss_pred CCEEEEECCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEee
Confidence 99999999999999999999998 556666678999999999997778999999999998654
No 333
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.85 E-value=3.8e-21 Score=203.21 Aligned_cols=165 Identities=18% Similarity=0.199 Sum_probs=130.3
Q ss_pred EEEcccccccCC-----eeE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhh-h-h--------------------
Q 004463 244 MTVGSLSKGISD-----FPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-L-M-------------------- 294 (752)
Q Consensus 244 l~~~~ls~~y~~-----~~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~-~-~-------------------- 294 (752)
++++||+..|.. +.| ++||++.+| ++++|+|.+||||||+.+.| ||+. . .
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~G-E~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKG-EILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCC-cEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 568888888853 234 999999999 99999999999999999999 7774 1 0
Q ss_pred ------hhhceeecCCCCCCch----H-----------------------HHHHHHHcCCch---hhhcCcccchHHHH-
Q 004463 295 ------SKAGLYLPAKNHPRLP----W-----------------------FDLILADIGDHQ---SLEQNLSTFSGHIS- 337 (752)
Q Consensus 295 ------aq~G~~vP~~~~~~l~----~-----------------------~d~i~~~ig~~~---~i~~~~stlSgg~k- 337 (752)
++-..++||+....+. + ...++..+|+.+ .++..+..|||||+
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 1122466666421111 1 112355566654 56889999999999
Q ss_pred HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceee
Q 004463 338 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 410 (752)
Q Consensus 338 rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~ 410 (752)
|+.++++++.+|+|||.||||++||...++.+.. +++.+.+ .|.++|++|||+. ...+||++.+|..|.++-
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~-Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE 234 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILD-LLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVE 234 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEE
Confidence 8889999999999999999999999999999999 6666665 7899999999999 566999999999998754
No 334
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4e-21 Score=187.90 Aligned_cols=140 Identities=22% Similarity=0.270 Sum_probs=113.7
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCC-------------
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP------------- 307 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~------------- 307 (752)
|++.+|++...+..++ +++|++.+| +++.|+||||+|||||||+| +|+.-|.+|.+
T Consensus 2 ~L~a~~L~~~R~e~~lf~~L~f~l~~G-e~~~i~G~NG~GKTtLLRil--------aGLl~p~~G~v~~~~~~i~~~~~~ 72 (209)
T COG4133 2 MLEAENLSCERGERTLFSDLSFTLNAG-EALQITGPNGAGKTTLLRIL--------AGLLRPDAGEVYWQGEPIQNVRES 72 (209)
T ss_pred cchhhhhhhccCcceeecceeEEEcCC-CEEEEECCCCCcHHHHHHHH--------HcccCCCCCeEEecCCCCccchhh
Confidence 4556788888887777 999999999 99999999999999999999 56555555421
Q ss_pred ----------------CchHHHH------------------HHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEE
Q 004463 308 ----------------RLPWFDL------------------ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 352 (752)
Q Consensus 308 ----------------~l~~~d~------------------i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~Ll 352 (752)
.++.+++ .++.+|+....+.++.+||.||+ |+++++..+..++|-
T Consensus 73 ~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLW 152 (209)
T COG4133 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLW 152 (209)
T ss_pred HHHHHHHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCce
Confidence 2222332 35667778888999999999999 899999999999999
Q ss_pred EEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh
Q 004463 353 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 392 (752)
Q Consensus 353 LLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~ 392 (752)
|||||++++|......|.. ++..-..+|+.||++||..-
T Consensus 153 iLDEP~taLDk~g~a~l~~-l~~~H~~~GGiVllttHq~l 191 (209)
T COG4133 153 ILDEPFTALDKEGVALLTA-LMAAHAAQGGIVLLTTHQPL 191 (209)
T ss_pred eecCcccccCHHHHHHHHH-HHHHHhcCCCEEEEecCCcc
Confidence 9999999999987777766 55555667899999999843
No 335
>PRK13409 putative ATPase RIL; Provisional
Probab=99.85 E-value=2.7e-21 Score=225.63 Aligned_cols=155 Identities=21% Similarity=0.201 Sum_probs=118.4
Q ss_pred cccccccCCe-eE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-hh-------------------------
Q 004463 247 GSLSKGISDF-PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-SK------------------------- 296 (752)
Q Consensus 247 ~~ls~~y~~~-~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-aq------------------------- 296 (752)
+++++.||++ ++ +++ .+.+| ++++|+||||+|||||||+| |++.+- +.
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~G-ev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEG-KVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCC-CEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 3589999864 34 888 78999 99999999999999999999 554321 00
Q ss_pred -----hc-eeecCCCC--CCc---h------------HHHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEE
Q 004463 297 -----AG-LYLPAKNH--PRL---P------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 352 (752)
Q Consensus 297 -----~G-~~vP~~~~--~~l---~------------~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~Ll 352 (752)
.. .+.|+... ..+ + -++.++..+++....++.+++|||||+ |++++++++.+|+++
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~ll 234 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFY 234 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 00 11122110 000 1 123456677888888999999999999 899999999999999
Q ss_pred EEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccC
Q 004463 353 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 405 (752)
Q Consensus 353 LLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~ 405 (752)
||||||++||+.....+.. ++..+.+ +.++|++||+++ +..++|++..+.+
T Consensus 235 lLDEPts~LD~~~~~~l~~-~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~ 286 (590)
T PRK13409 235 FFDEPTSYLDIRQRLNVAR-LIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYG 286 (590)
T ss_pred EEECCCCCCCHHHHHHHHH-HHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999998 5566777 899999999988 5668888866643
No 336
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.1e-21 Score=214.84 Aligned_cols=158 Identities=20% Similarity=0.207 Sum_probs=130.3
Q ss_pred eEEEcccccccCCee--E--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchH-------
Q 004463 243 EMTVGSLSKGISDFP--V--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW------- 311 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~--v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~------- 311 (752)
.++++||+|+|++.. + ++||++.+| +.++|+|++||||||++.++ .|.+.|++|...+..
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~G-EkvAIlG~SGsGKSTllqLl--------~~~~~~~~G~i~~~g~~~~~l~ 406 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQG-EKVAILGRSGSGKSTLLQLL--------AGAWDPQQGSITLNGVEIASLD 406 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCC-CeEEEECCCCCCHHHHHHHH--------HhccCCCCCeeeECCcChhhCC
Confidence 789999999998755 4 999999999 99999999999999999999 888888877322210
Q ss_pred -----------------H-----H---------------HHHHHcCCch-----------hhhcCcccchHHHH-HHHHH
Q 004463 312 -----------------F-----D---------------LILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDI 342 (752)
Q Consensus 312 -----------------~-----d---------------~i~~~ig~~~-----------~i~~~~stlSgg~k-rl~~i 342 (752)
| + .++..+|+++ .+...-..|||||+ |++++
T Consensus 407 ~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlA 486 (573)
T COG4987 407 EQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALA 486 (573)
T ss_pred hhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHH
Confidence 1 1 1234444433 34455678999999 89999
Q ss_pred HHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 343 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 343 ~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
+.+.++.+++||||||.||||..-..+...+.+++. |.|+|++||+..-.+.||++++++||++...
T Consensus 487 R~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~~le~~drIivl~~Gkiie~ 553 (573)
T COG4987 487 RALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLRGLERMDRIIVLDNGKIIEE 553 (573)
T ss_pred HHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccccHhhcCEEEEEECCeeeec
Confidence 999999999999999999999999999886666554 7899999999988889999999999988765
No 337
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.85 E-value=2.3e-21 Score=226.92 Aligned_cols=166 Identities=15% Similarity=0.150 Sum_probs=126.1
Q ss_pred CeEEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhh
Q 004463 242 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 297 (752)
Q Consensus 242 ~~l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~ 297 (752)
+.++++||+++|++ .++ ++|+++++| +.++|+||||||||||+|++ |+..+- .+.
T Consensus 340 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G-~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 418 (582)
T PRK11176 340 GDIEFRNVTFTYPGKEVPALRNINFKIPAG-KTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418 (582)
T ss_pred CeEEEEEEEEecCCCCCccccCceEEeCCC-CEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhh
Confidence 35899999999964 445 999999999 99999999999999999999 555431 123
Q ss_pred ceeecCCCCC-CchHHHH----------------HHHHcCCchh-----------hhcCcccchHHHH-HHHHHHHccCC
Q 004463 298 GLYLPAKNHP-RLPWFDL----------------ILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSR 348 (752)
Q Consensus 298 G~~vP~~~~~-~l~~~d~----------------i~~~ig~~~~-----------i~~~~stlSgg~k-rl~~i~~la~~ 348 (752)
-.|+||+... .-++-++ .+...|..+. +...-..|||||+ |++++++++.+
T Consensus 419 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~ 498 (582)
T PRK11176 419 VALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRD 498 (582)
T ss_pred ceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 3466666410 0011122 2222333322 2223366999999 89999999999
Q ss_pred CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 004463 349 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 349 ~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~ 410 (752)
|+++||||||+++|+.....+..++.+ +.+ ++|+|++||+.+....||+++.+.+|++..
T Consensus 499 ~~ililDEptsaLD~~t~~~i~~~l~~-~~~-~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e 558 (582)
T PRK11176 499 SPILILDEATSALDTESERAIQAALDE-LQK-NRTSLVIAHRLSTIEKADEILVVEDGEIVE 558 (582)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHH-HhC-CCEEEEEecchHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999886655 333 689999999999888899999999988754
No 338
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.85 E-value=3.4e-21 Score=225.69 Aligned_cols=166 Identities=14% Similarity=0.125 Sum_probs=126.0
Q ss_pred CeEEEcccccccCC-eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhhc
Q 004463 242 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 298 (752)
Q Consensus 242 ~~l~~~~ls~~y~~-~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~G 298 (752)
+.++++||+++|++ .++ ++||++++| +.++|+||||||||||++++ |+..+. .+.-
T Consensus 333 ~~i~~~~v~~~y~~~~~~l~~i~~~i~~G-~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 411 (585)
T TIGR01192 333 GAVEFRHITFEFANSSQGVFDVSFEAKAG-QTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSI 411 (585)
T ss_pred CeEEEEEEEEECCCCCccccceeEEEcCC-CEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 46899999999975 444 999999999 99999999999999999999 554321 1222
Q ss_pred eeecCCCCC-CchHHHHH---------------HHHc-----------CCchhhhcCcccchHHHH-HHHHHHHccCCCc
Q 004463 299 LYLPAKNHP-RLPWFDLI---------------LADI-----------GDHQSLEQNLSTFSGHIS-RIVDILELVSRES 350 (752)
Q Consensus 299 ~~vP~~~~~-~l~~~d~i---------------~~~i-----------g~~~~i~~~~stlSgg~k-rl~~i~~la~~~~ 350 (752)
.++|++... .-++.+++ +... |.+..+......|||||+ |++++++++.+|+
T Consensus 412 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ 491 (585)
T TIGR01192 412 ATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAP 491 (585)
T ss_pred EEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 456665410 11112222 1111 222334456678999999 8999999999999
Q ss_pred EEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 004463 351 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 351 LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~ 410 (752)
++||||||+|||+.....+...+.+ +. .+.|+|++||+.+....||+++.+.+|++..
T Consensus 492 ililDEpts~LD~~~~~~i~~~l~~-~~-~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~ 549 (585)
T TIGR01192 492 ILVLDEATSALDVETEARVKNAIDA-LR-KNRTTFIIAHRLSTVRNADLVLFLDQGRLIE 549 (585)
T ss_pred EEEEECCccCCCHHHHHHHHHHHHH-Hh-CCCEEEEEEcChHHHHcCCEEEEEECCEEEE
Confidence 9999999999999999999885544 43 3789999999998777899999999998764
No 339
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.85 E-value=3.4e-21 Score=230.01 Aligned_cols=166 Identities=19% Similarity=0.181 Sum_probs=125.8
Q ss_pred CeEEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------------------hhhh
Q 004463 242 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 297 (752)
Q Consensus 242 ~~l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------~aq~ 297 (752)
+.++++||+|+|++ .++ ++||++++| +.++|+||||||||||+|++ |+..+ +.+.
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G-~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~ 540 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPALDNVSLTIRPG-EKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRN 540 (694)
T ss_pred ceEEEEEEEEEeCCCCccceeeeeEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhc
Confidence 46899999999964 344 999999999 99999999999999999999 44322 1122
Q ss_pred ceeecCCCCC-CchHHH---------------HHHHHcCCchh-----------hhcCcccchHHHH-HHHHHHHccCCC
Q 004463 298 GLYLPAKNHP-RLPWFD---------------LILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRE 349 (752)
Q Consensus 298 G~~vP~~~~~-~l~~~d---------------~i~~~ig~~~~-----------i~~~~stlSgg~k-rl~~i~~la~~~ 349 (752)
-.++||+... .-++.+ +.+...+..+. +...-..|||||+ |++++++++.+|
T Consensus 541 i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p 620 (694)
T TIGR03375 541 IGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDP 620 (694)
T ss_pred cEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 3355555310 001112 22333333332 3344568999999 899999999999
Q ss_pred cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 004463 350 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 350 ~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~ 410 (752)
+++||||||+++|+.....+...+.+ +.+ ++|+|++||+++....||+++.+++|++..
T Consensus 621 ~iliLDE~Ts~LD~~te~~i~~~l~~-~~~-~~T~iiItHrl~~~~~~D~iivl~~G~i~e 679 (694)
T TIGR03375 621 PILLLDEPTSAMDNRSEERFKDRLKR-WLA-GKTLVLVTHRTSLLDLVDRIIVMDNGRIVA 679 (694)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHH-HhC-CCEEEEEecCHHHHHhCCEEEEEeCCEEEe
Confidence 99999999999999999999886554 433 689999999999888999999999998764
No 340
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.85 E-value=3.1e-21 Score=225.27 Aligned_cols=166 Identities=13% Similarity=0.130 Sum_probs=127.3
Q ss_pred CeEEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhh
Q 004463 242 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 297 (752)
Q Consensus 242 ~~l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~ 297 (752)
+.++++||+++|++ .++ ++||++++| +.++|+||||+|||||+|++ |+..+- .+.
T Consensus 329 ~~i~~~~v~f~y~~~~~~il~~inl~i~~G-~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~ 407 (571)
T TIGR02203 329 GDVEFRNVTFRYPGRDRPALDSISLVIEPG-ETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQ 407 (571)
T ss_pred CeEEEEEEEEEcCCCCCccccCeeEEecCC-CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhh
Confidence 45889999999964 444 999999999 99999999999999999999 665431 122
Q ss_pred ceeecCCCCC-CchH----------------HHHHHHHcCCchhh-----------hcCcccchHHHH-HHHHHHHccCC
Q 004463 298 GLYLPAKNHP-RLPW----------------FDLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSR 348 (752)
Q Consensus 298 G~~vP~~~~~-~l~~----------------~d~i~~~ig~~~~i-----------~~~~stlSgg~k-rl~~i~~la~~ 348 (752)
-.|+|++... .-++ +.+++...|+.+.+ ...-..|||||+ |++++++++.+
T Consensus 408 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~ 487 (571)
T TIGR02203 408 VALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKD 487 (571)
T ss_pred ceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 3467776410 0011 22233444443332 233457999999 89999999999
Q ss_pred CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 004463 349 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 349 ~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~ 410 (752)
|+++||||||+++|+.....+...+.+ +. .+.|+|++||+..+...||+++.+++|++..
T Consensus 488 ~~illLDEpts~LD~~~~~~i~~~L~~-~~-~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~ 547 (571)
T TIGR02203 488 APILILDEATSALDNESERLVQAALER-LM-QGRTTLVIAHRLSTIEKADRIVVMDDGRIVE 547 (571)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHH-Hh-CCCEEEEEehhhHHHHhCCEEEEEeCCEEEe
Confidence 999999999999999999999886654 33 3689999999999889999999999988653
No 341
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.2e-21 Score=214.96 Aligned_cols=164 Identities=17% Similarity=0.241 Sum_probs=125.0
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCC---------C---CC
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKN---------H---PR 308 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~---------~---~~ 308 (752)
.|.+.+.+..||++.+ .-++++..| +.++|+||||+|||||||+|+--.+ .|+++|++- . +.
T Consensus 80 Di~~~~fdLa~G~k~LL~~a~L~L~~G-rRYGLvGrNG~GKsTLLRaia~~~v---~~f~veqE~~g~~t~~~~~~l~~D 155 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGKILLNKANLTLSRG-RRYGLVGRNGIGKSTLLRAIANGQV---SGFHVEQEVRGDDTEALQSVLESD 155 (582)
T ss_pred ceeeeeeeeeecchhhhcCCceeeecc-cccceeCCCCCcHHHHHHHHHhcCc---CccCchhheeccchHHHhhhhhcc
Confidence 4667788999998876 778889999 8999999999999999999933111 234444331 0 01
Q ss_pred ch-------------------HHHHHHHHcCCc-hhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHH
Q 004463 309 LP-------------------WFDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV 367 (752)
Q Consensus 309 l~-------------------~~d~i~~~ig~~-~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~ 367 (752)
+. +.++++..+|.. +...++..+||||.+ |+++++++..+|+|||||||||+||...
T Consensus 156 ~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~a-- 233 (582)
T KOG0062|consen 156 TERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVA-- 233 (582)
T ss_pred HHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHH--
Confidence 11 122345566654 456789999999999 9999999999999999999999999954
Q ss_pred HHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeeccCc
Q 004463 368 ALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLET 414 (752)
Q Consensus 368 ~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~~~~ 414 (752)
++| +-.||...+.|+|+||||.. |...|..++.+++-++.++.++
T Consensus 234 -v~W-Le~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN 279 (582)
T KOG0062|consen 234 -VAW-LENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGN 279 (582)
T ss_pred -HHH-HHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCc
Confidence 555 55678777899999999988 6778998888887666555443
No 342
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.85 E-value=4.1e-21 Score=225.40 Aligned_cols=165 Identities=16% Similarity=0.150 Sum_probs=126.2
Q ss_pred CeEEEcccccccCC-eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhhc
Q 004463 242 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 298 (752)
Q Consensus 242 ~~l~~~~ls~~y~~-~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~G 298 (752)
+.++++|+++.|++ .++ ++||++++| +.++|+||||||||||+|++ |+..+- .+.-
T Consensus 339 ~~i~~~~v~f~y~~~~~il~~i~l~i~~G-e~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i 417 (592)
T PRK10790 339 GRIDIDNVSFAYRDDNLVLQNINLSVPSR-GFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGV 417 (592)
T ss_pred CeEEEEEEEEEeCCCCceeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 45889999999964 445 999999999 99999999999999999999 444321 1223
Q ss_pred eeecCCCCCCc--hH--------------HHHHHHHcCCchhh-----------hcCcccchHHHH-HHHHHHHccCCCc
Q 004463 299 LYLPAKNHPRL--PW--------------FDLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRES 350 (752)
Q Consensus 299 ~~vP~~~~~~l--~~--------------~d~i~~~ig~~~~i-----------~~~~stlSgg~k-rl~~i~~la~~~~ 350 (752)
.|+||+.. -+ ++ +.+++...|..+.+ ...-..|||||+ |++++++++.+|+
T Consensus 418 ~~v~Q~~~-lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~ 496 (592)
T PRK10790 418 AMVQQDPV-VLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQ 496 (592)
T ss_pred EEEccCCc-cccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 45666541 11 11 12233344444333 234467999999 8999999999999
Q ss_pred EEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 004463 351 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 351 LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~ 410 (752)
++||||||+++|+.....+...+.+ +.. ++|+|++||+.+....||+++.+.+|++..
T Consensus 497 illlDEpts~LD~~t~~~i~~~l~~-~~~-~~tvIivtHr~~~l~~~D~ii~l~~G~i~~ 554 (592)
T PRK10790 497 ILILDEATANIDSGTEQAIQQALAA-VRE-HTTLVVIAHRLSTIVEADTILVLHRGQAVE 554 (592)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHH-HhC-CCEEEEEecchHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999886654 433 589999999999888899999999998864
No 343
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=6.1e-21 Score=199.10 Aligned_cols=150 Identities=20% Similarity=0.179 Sum_probs=122.1
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------------hhhceeecCCCCCCchH---
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGLYLPAKNHPRLPW--- 311 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------------aq~G~~vP~~~~~~l~~--- 311 (752)
++||+++.| ++++|.|-+|||||||+|++ +|+.+- .+.-..|.|+. .-+|+
T Consensus 46 ~~sl~v~~G-eIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~F-aLlPhrtV 123 (386)
T COG4175 46 DASLDVEEG-EIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSF-ALLPHRTV 123 (386)
T ss_pred cceeeecCC-eEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhh-ccccchhH
Confidence 889999999 99999999999999999999 444321 01111222221 11221
Q ss_pred ---------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHH
Q 004463 312 ---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVAL 369 (752)
Q Consensus 312 ---------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L 369 (752)
....+..+|+.+..++.+..|||||+ |+-++++++++|++||||||+|.|||.-+..+
T Consensus 124 l~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~m 203 (386)
T COG4175 124 LENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEM 203 (386)
T ss_pred hhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHH
Confidence 22457788999999999999999999 89999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEEecchhHH-hhhcccccccCCceee
Q 004463 370 ATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEF 410 (752)
Q Consensus 370 ~~all~~l~~~~~tviitTH~~~l~-~~a~~~~~i~~g~v~~ 410 (752)
..-+++.-.+-..||+|+|||++.+ ++.+++..+++|.+.-
T Consensus 204 QdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ 245 (386)
T COG4175 204 QDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQ 245 (386)
T ss_pred HHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEE
Confidence 9988887777789999999998854 5899999999998753
No 344
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=8.3e-21 Score=210.32 Aligned_cols=167 Identities=16% Similarity=0.163 Sum_probs=135.1
Q ss_pred CCeEEEcccccccCCee-E--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-------Hhhhh------------hhhhc
Q 004463 241 NSEMTVGSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-------GLASL------------MSKAG 298 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~~-v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-------Gli~~------------~aq~G 298 (752)
++.++++||+++|+++. | +++|+++.| +.++|+|+|||||||+||++ |-+.+ +.++.
T Consensus 349 ~~~I~F~dV~f~y~~k~~iL~gvsf~I~kG-ekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~I 427 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGPKRKVLKGVSFTIPKG-EKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSI 427 (591)
T ss_pred CCcEEEEeeEEEeCCCCceecceeEEecCC-CEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhhe
Confidence 34589999999998766 6 999999999 99999999999999999999 33322 35677
Q ss_pred eeecCCCCCCch--H------------HH---HHHHHcCCchhhh-----------cCcccchHHHH-HHHHHHHccCCC
Q 004463 299 LYLPAKNHPRLP--W------------FD---LILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSRE 349 (752)
Q Consensus 299 ~~vP~~~~~~l~--~------------~d---~i~~~ig~~~~i~-----------~~~stlSgg~k-rl~~i~~la~~~ 349 (752)
.+|||+.. -+. + ++ ++..+.|+.|.+. ..-..|||||| |++++++++.+|
T Consensus 428 g~VPQd~~-LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda 506 (591)
T KOG0057|consen 428 GVVPQDSV-LFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA 506 (591)
T ss_pred eEeCCccc-ccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC
Confidence 79999862 111 1 22 2234445554443 34457999999 899999999999
Q ss_pred cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 350 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 350 ~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
+++++|||||+||..+-..|...+++ ...+.|+|++-|++.+...||+++.+.||.+...
T Consensus 507 ~Il~~DEaTS~LD~~TE~~i~~~i~~--~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~ 566 (591)
T KOG0057|consen 507 PILLLDEATSALDSETEREILDMIMD--VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEY 566 (591)
T ss_pred CeEEecCcccccchhhHHHHHHHHHH--hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEe
Confidence 99999999999999999999997777 3447899999999999999999999999998654
No 345
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=6.5e-21 Score=197.57 Aligned_cols=158 Identities=18% Similarity=0.130 Sum_probs=132.4
Q ss_pred eEEEcccccccCC----------eeE-eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCch-
Q 004463 243 EMTVGSLSKGISD----------FPV-PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP- 310 (752)
Q Consensus 243 ~l~~~~ls~~y~~----------~~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~- 310 (752)
+++++||++.|.. +.| +|||++.+| ++++|+|.+||||||+-|+| .|+.-|++|...+.
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~g-e~~glVGESG~GKSTlgr~i--------~~L~~pt~G~i~f~g 74 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEG-ETLGLVGESGCGKSTLGRLI--------LGLEEPTSGEILFEG 74 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCC-CEEEEEecCCCCHHHHHHHH--------HcCcCCCCceEEEcC
Confidence 5778889888853 223 899999999 99999999999999999999 88888877743222
Q ss_pred -------------HHHHHHHHcCCch-hhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHH
Q 004463 311 -------------WFDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ 375 (752)
Q Consensus 311 -------------~~d~i~~~ig~~~-~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~ 375 (752)
.+..++..+|... .+.+.+..||||++ |+.++++++.+|+++++|||++.||...++.+.. ++.
T Consensus 75 ~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIln-LL~ 153 (268)
T COG4608 75 KDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILN-LLK 153 (268)
T ss_pred cchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHH-HHH
Confidence 2445677888754 78999999999999 8999999999999999999999999999999999 555
Q ss_pred HHh-cCCcEEEEEecchhHH-hhhcccccccCCceee
Q 004463 376 YLR-DRVGLAVVTTHYADLS-CLKDKDTRFENAATEF 410 (752)
Q Consensus 376 ~l~-~~~~tviitTH~~~l~-~~a~~~~~i~~g~v~~ 410 (752)
.+. +.|.+.+|+|||+.+. .+||++.+|..|.++-
T Consensus 154 dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE 190 (268)
T COG4608 154 DLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVE 190 (268)
T ss_pred HHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeE
Confidence 555 4588999999999955 5899998898888754
No 346
>PLN03211 ABC transporter G-25; Provisional
Probab=99.84 E-value=5e-21 Score=226.02 Aligned_cols=164 Identities=18% Similarity=0.242 Sum_probs=128.8
Q ss_pred EcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------hhhceeecCCC
Q 004463 246 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAKN 305 (752)
Q Consensus 246 ~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------aq~G~~vP~~~ 305 (752)
.+|+++.|+++.+ ++|+++.+| ++++|+|||||||||||++| |+...- .+...|+|++.
T Consensus 71 ~~~l~~~~~~~~iL~~vs~~i~~G-e~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~ 149 (659)
T PLN03211 71 ISDETRQIQERTILNGVTGMASPG-EILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDD 149 (659)
T ss_pred cccccccCCCCeeeeCCEEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECccc
Confidence 5678899987766 999999999 99999999999999999999 665321 11124677664
Q ss_pred C--CCchHH------------------------HHHHHHcCCchhh-----hcCcccchHHHH-HHHHHHHccCCCcEEE
Q 004463 306 H--PRLPWF------------------------DLILADIGDHQSL-----EQNLSTFSGHIS-RIVDILELVSRESLVL 353 (752)
Q Consensus 306 ~--~~l~~~------------------------d~i~~~ig~~~~i-----~~~~stlSgg~k-rl~~i~~la~~~~LlL 353 (752)
. ..+++. +.++..+|+.+.. ++....|||||+ |++++++++.+|+++|
T Consensus 150 ~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl 229 (659)
T PLN03211 150 ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 229 (659)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE
Confidence 1 112222 2344455654433 335678999999 8999999999999999
Q ss_pred EeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh--HHhhhcccccccCCceeec
Q 004463 354 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 354 LDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~--l~~~a~~~~~i~~g~v~~~ 411 (752)
|||||+|||+.....+.. ++..+.+.|.|+|++||+++ +..++|+++.+.+|++.+.
T Consensus 230 LDEPtsgLD~~~~~~l~~-~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~ 288 (659)
T PLN03211 230 LDEPTSGLDATAAYRLVL-TLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFF 288 (659)
T ss_pred EeCCCCCcCHHHHHHHHH-HHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEE
Confidence 999999999999999998 55567767899999999975 5779999999999998765
No 347
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=2.9e-21 Score=189.35 Aligned_cols=165 Identities=22% Similarity=0.264 Sum_probs=129.7
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh--------------------hhhhce
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------------------MSKAGL 299 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~--------------------~aq~G~ 299 (752)
.++++||+.+|++... +++|++.+| +.-+|+||||+||||+|..| |...+ .|++|.
T Consensus 5 iL~~~~vsVsF~GF~Aln~ls~~v~~G-elr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GI 83 (249)
T COG4674 5 ILYLDGVSVSFGGFKALNDLSFSVDPG-ELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGI 83 (249)
T ss_pred eEEEeceEEEEcceeeeeeeEEEecCC-eEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhcc
Confidence 5778999999999665 899999999 99999999999999999999 33221 122221
Q ss_pred -eecCCC--CCCchH-----------------------------HHHHHHHcCCchhhhcCcccchHHHHH-HHHHHHcc
Q 004463 300 -YLPAKN--HPRLPW-----------------------------FDLILADIGDHQSLEQNLSTFSGHISR-IVDILELV 346 (752)
Q Consensus 300 -~vP~~~--~~~l~~-----------------------------~d~i~~~ig~~~~i~~~~stlSgg~kr-l~~i~~la 346 (752)
-..+.+ +..+++ ++.+++.+|+.+..+...++||-|+|| +-+.+.++
T Consensus 84 GRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~ 163 (249)
T COG4674 84 GRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLA 163 (249)
T ss_pred CccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeec
Confidence 001111 011112 445688889999999999999999995 55558899
Q ss_pred CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceee
Q 004463 347 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEF 410 (752)
Q Consensus 347 ~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~ 410 (752)
.+|.|||||||.+|+--.+....+. ++..++. .++|+++.||+.+ ..+++++.++..|++..
T Consensus 164 Q~P~lLLlDEPvAGMTd~Et~~tae-Ll~~la~-~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~ 226 (249)
T COG4674 164 QDPKLLLLDEPVAGMTDAETEKTAE-LLKSLAG-KHSILVVEHDMGFVREIADKVTVLHEGSVLA 226 (249)
T ss_pred cCCcEEEecCccCCCcHHHHHHHHH-HHHHHhc-CceEEEEeccHHHHHHhhheeEEEeccceee
Confidence 9999999999999999999999998 6666766 4799999999994 55999999888888754
No 348
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.84 E-value=8.6e-21 Score=224.73 Aligned_cols=159 Identities=15% Similarity=0.159 Sum_probs=122.5
Q ss_pred CCeEEEcccccccC-CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh--------hhceeecCCCCC-
Q 004463 241 NSEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNHP- 307 (752)
Q Consensus 241 ~~~l~~~~ls~~y~-~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a--------q~G~~vP~~~~~- 307 (752)
.++++++||++.|+ +..+ ++||++++| ++++|+||||||||||+|++ |+..+-. ....++|++...
T Consensus 449 ~~~i~~~nv~~~~~~~~~il~~isl~i~~G-e~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~ 527 (659)
T TIGR00954 449 DNGIKFENIPLVTPNGDVLIESLSFEVPSG-NHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMT 527 (659)
T ss_pred CCeEEEEeeEEECCCCCeeeecceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCC
Confidence 35799999999995 4344 999999999 99999999999999999999 6654321 112467776410
Q ss_pred CchH----------------------HHHHHHHcCCchhhhcC---------cccchHHHH-HHHHHHHccCCCcEEEEe
Q 004463 308 RLPW----------------------FDLILADIGDHQSLEQN---------LSTFSGHIS-RIVDILELVSRESLVLID 355 (752)
Q Consensus 308 ~l~~----------------------~d~i~~~ig~~~~i~~~---------~stlSgg~k-rl~~i~~la~~~~LlLLD 355 (752)
.-++ +..++..+++.+.++++ ..+|||||+ |++++++++.+|+++|||
T Consensus 528 ~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLD 607 (659)
T TIGR00954 528 LGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILD 607 (659)
T ss_pred CcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 0011 22345555665555543 278999999 899999999999999999
Q ss_pred CCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccccc
Q 004463 356 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 404 (752)
Q Consensus 356 Ep~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~ 404 (752)
|||+|||+.....+...+.+ .+.|+|++||+.++..+||+++.+.
T Consensus 608 Epts~LD~~~~~~l~~~l~~----~~~tvI~isH~~~~~~~~d~il~l~ 652 (659)
T TIGR00954 608 ECTSAVSVDVEGYMYRLCRE----FGITLFSVSHRKSLWKYHEYLLYMD 652 (659)
T ss_pred CCccCCCHHHHHHHHHHHHH----cCCEEEEEeCchHHHHhCCEEEEEe
Confidence 99999999988887774433 4889999999999888999887774
No 349
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.84 E-value=8.3e-21 Score=221.75 Aligned_cols=167 Identities=11% Similarity=0.103 Sum_probs=125.0
Q ss_pred CeEEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhh
Q 004463 242 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA 297 (752)
Q Consensus 242 ~~l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~ 297 (752)
+.+.+++++++|++ .++ ++||++++| +.++|+||||||||||++++ |+..+- .+.
T Consensus 312 ~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G-~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 390 (569)
T PRK10789 312 GELDVNIRQFTYPQTDHPALENVNFTLKPG-QMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSR 390 (569)
T ss_pred CcEEEEEEEEECCCCCCccccCeeEEECCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhh
Confidence 45889999999964 344 999999999 99999999999999999999 554321 122
Q ss_pred ceeecCCCCC-CchHHHH---------------HHHHcCCchh-----------hhcCcccchHHHH-HHHHHHHccCCC
Q 004463 298 GLYLPAKNHP-RLPWFDL---------------ILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRE 349 (752)
Q Consensus 298 G~~vP~~~~~-~l~~~d~---------------i~~~ig~~~~-----------i~~~~stlSgg~k-rl~~i~~la~~~ 349 (752)
-.++|++... .-++.++ .+...+..+. +......|||||+ |++++++++.+|
T Consensus 391 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~ 470 (569)
T PRK10789 391 LAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNA 470 (569)
T ss_pred eEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 2355555310 0011222 2222233222 2344568999999 899999999999
Q ss_pred cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 350 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 350 ~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
+++||||||+++|+.....+...+.+ +. .+.|+|++||+.+....||+++.+.+|++...
T Consensus 471 ~illlDEpts~LD~~~~~~i~~~l~~-~~-~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~ 530 (569)
T PRK10789 471 EILILDDALSAVDGRTEHQILHNLRQ-WG-EGRTVIISAHRLSALTEASEILVMQHGHIAQR 530 (569)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHH-Hh-CCCEEEEEecchhHHHcCCEEEEEeCCEEEEe
Confidence 99999999999999999999886544 43 47899999999987778999999999987643
No 350
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.84 E-value=6.4e-21 Score=228.18 Aligned_cols=166 Identities=17% Similarity=0.181 Sum_probs=127.4
Q ss_pred CeEEEcccccccCC-eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------------------hhhhc
Q 004463 242 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG 298 (752)
Q Consensus 242 ~~l~~~~ls~~y~~-~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------~aq~G 298 (752)
+.++++||+|+|++ .++ ++||++++| +.++|+||||||||||+|++ |+..+ +.+.-
T Consensus 472 ~~I~~~~vsf~y~~~~~iL~~isl~i~~G-~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 550 (708)
T TIGR01193 472 GDIVINDVSYSYGYGSNILSDISLTIKMN-SKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFI 550 (708)
T ss_pred CcEEEEEEEEEcCCCCcceeceeEEECCC-CEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHhe
Confidence 46899999999973 444 999999999 99999999999999999999 55432 11233
Q ss_pred eeecCCCCC-CchH----------------HHHHHHHcCCch-----------hhhcCcccchHHHH-HHHHHHHccCCC
Q 004463 299 LYLPAKNHP-RLPW----------------FDLILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRE 349 (752)
Q Consensus 299 ~~vP~~~~~-~l~~----------------~d~i~~~ig~~~-----------~i~~~~stlSgg~k-rl~~i~~la~~~ 349 (752)
.|+|++... .-++ +.+.+...+..+ .+......|||||+ |++++++++.+|
T Consensus 551 ~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p 630 (708)
T TIGR01193 551 NYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDS 630 (708)
T ss_pred EEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCC
Confidence 467766410 0011 112223333332 23345578999999 899999999999
Q ss_pred cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 350 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 350 ~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
+++||||||+++|+.....+...+.+ + .+.|+|++||+.+....||+++.+++|++...
T Consensus 631 ~iliLDE~Ts~LD~~te~~i~~~L~~-~--~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~ 689 (708)
T TIGR01193 631 KVLILDESTSNLDTITEKKIVNNLLN-L--QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQ 689 (708)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHH-h--cCCEEEEEecchHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999998886655 3 37899999999998889999999999987643
No 351
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.84 E-value=7.3e-21 Score=222.43 Aligned_cols=167 Identities=14% Similarity=0.165 Sum_probs=126.4
Q ss_pred CeEEEcccccccCC---eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hh
Q 004463 242 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SK 296 (752)
Q Consensus 242 ~~l~~~~ls~~y~~---~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq 296 (752)
+.++++||+++|++ +++ ++||++++| +.++|+||||||||||+|++ |+..+- .+
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~G-e~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 414 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPG-ETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRA 414 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecCC-CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHH
Confidence 35889999999964 345 999999999 99999999999999999999 555331 11
Q ss_pred hceeecCCCCC-CchHHHH---------------HHHHcCC-----------chhhhcCcccchHHHH-HHHHHHHccCC
Q 004463 297 AGLYLPAKNHP-RLPWFDL---------------ILADIGD-----------HQSLEQNLSTFSGHIS-RIVDILELVSR 348 (752)
Q Consensus 297 ~G~~vP~~~~~-~l~~~d~---------------i~~~ig~-----------~~~i~~~~stlSgg~k-rl~~i~~la~~ 348 (752)
.-.|+|++... .-++.++ .+...|. +..+......|||||+ |++++++++.+
T Consensus 415 ~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~ 494 (576)
T TIGR02204 415 RMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKD 494 (576)
T ss_pred hceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 23466666410 0011122 2222232 2233445678999999 89999999999
Q ss_pred CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 349 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 349 ~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
|+++||||||+++|+.....+...+.+ +. .+.|+|++||+.+....+|+++.+.+|++...
T Consensus 495 ~~ililDEpts~lD~~~~~~i~~~l~~-~~-~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~ 555 (576)
T TIGR02204 495 APILLLDEATSALDAESEQLVQQALET-LM-KGRTTLIIAHRLATVLKADRIVVMDQGRIVAQ 555 (576)
T ss_pred CCeEEEeCcccccCHHHHHHHHHHHHH-Hh-CCCEEEEEecchHHHHhCCEEEEEECCEEEee
Confidence 999999999999999998888885544 43 37899999999998888999999999987643
No 352
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.84 E-value=1.4e-20 Score=194.90 Aligned_cols=150 Identities=25% Similarity=0.316 Sum_probs=109.1
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHH-HHH---Hhhhhh--------hhh-ceeec--------------CCC----CC
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASM-KTL---GLASLM--------SKA-GLYLP--------------AKN----HP 307 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlL-K~i---Gli~~~--------aq~-G~~vP--------------~~~----~~ 307 (752)
++||++++| ++++|+||||||||||+ .++ |-+.+. ... +++.| +.. ..
T Consensus 13 ~vsl~i~~G-e~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (226)
T cd03270 13 NVDVDIPRN-KLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKTTSRNP 91 (226)
T ss_pred cceeecCCC-cEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCCCCCCC
Confidence 899999999 99999999999999996 333 211100 000 01111 111 01
Q ss_pred Cch---------HH------------HHHHHHcCCch-hhhcCcccchHHHH-HHHHHHHccCCC--cEEEEeCCCCCCC
Q 004463 308 RLP---------WF------------DLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRE--SLVLIDEIGSGTD 362 (752)
Q Consensus 308 ~l~---------~~------------d~i~~~ig~~~-~i~~~~stlSgg~k-rl~~i~~la~~~--~LlLLDEp~~glD 362 (752)
... ++ ..++..+++.+ ..++.+++|||||+ |++++++++.+| +++||||||+|+|
T Consensus 92 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD 171 (226)
T cd03270 92 RSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLH 171 (226)
T ss_pred CccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCC
Confidence 101 11 12244456655 47889999999999 899999999987 5999999999999
Q ss_pred hHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccc------cCCceee
Q 004463 363 PSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF------ENAATEF 410 (752)
Q Consensus 363 ~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i------~~g~v~~ 410 (752)
+.....+... +..+.+.|.|+|++||+++...+|++++.+ .+|++..
T Consensus 172 ~~~~~~l~~~-l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~ 224 (226)
T cd03270 172 PRDNDRLIET-LKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVA 224 (226)
T ss_pred HHHHHHHHHH-HHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEe
Confidence 9999999984 455666789999999999877799999999 6666654
No 353
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.4e-20 Score=211.34 Aligned_cols=166 Identities=17% Similarity=0.210 Sum_probs=126.2
Q ss_pred eEEEcccccccCCe-eE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhhce
Q 004463 243 EMTVGSLSKGISDF-PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 299 (752)
Q Consensus 243 ~l~~~~ls~~y~~~-~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~G~ 299 (752)
.+..+|+++.|++. ++ ++||++++| +.++|+||||||||||+..+ |+...- .+.-.
T Consensus 320 ei~~~~l~~~y~~g~~~l~~l~~t~~~g-~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~ 398 (559)
T COG4988 320 EISLENLSFRYPDGKPALSDLNLTIKAG-QLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS 398 (559)
T ss_pred eeeecceEEecCCCCcccCCceeEecCC-cEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee
Confidence 35566999999764 44 999999999 99999999999999999999 554420 12234
Q ss_pred eecCCCCCCc-hH---------------HHHHHHHcC----------CchhhhcCcccchHHHH-HHHHHHHccCCCcEE
Q 004463 300 YLPAKNHPRL-PW---------------FDLILADIG----------DHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 352 (752)
Q Consensus 300 ~vP~~~~~~l-~~---------------~d~i~~~ig----------~~~~i~~~~stlSgg~k-rl~~i~~la~~~~Ll 352 (752)
++|+.+...- ++ +.+++...| .+-.+..+-+.|||||+ |+++++++..+++++
T Consensus 399 ~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~ 478 (559)
T COG4988 399 WVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLL 478 (559)
T ss_pred eeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 5555542100 01 112222323 33345556677999999 999999999999999
Q ss_pred EEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 353 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 353 LLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
|+||||+|+|.++-..+.+.+.+. .+ +.|+|++||.++...-+|+++++++|.+...
T Consensus 479 llDEpTA~LD~etE~~i~~~l~~l-~~-~ktvl~itHrl~~~~~~D~I~vld~G~l~~~ 535 (559)
T COG4988 479 LLDEPTAHLDAETEQIILQALQEL-AK-QKTVLVITHRLEDAADADRIVVLDNGRLVEQ 535 (559)
T ss_pred EecCCccCCCHhHHHHHHHHHHHH-Hh-CCeEEEEEcChHHHhcCCEEEEecCCceecc
Confidence 999999999999988888866664 44 3799999999998889999999999988654
No 354
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.84 E-value=8.6e-21 Score=226.91 Aligned_cols=165 Identities=16% Similarity=0.136 Sum_probs=124.2
Q ss_pred CeEEEcccccccCC---eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------------------hhh
Q 004463 242 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK 296 (752)
Q Consensus 242 ~~l~~~~ls~~y~~---~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------~aq 296 (752)
+.++++||+++|++ .++ ++||++++| +.++|+||||||||||+|++ |+..+ +.+
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~G-e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 555 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPG-EVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccCceEEEcCC-CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHh
Confidence 56899999999974 345 999999999 99999999999999999999 55432 112
Q ss_pred hceeecCCCCC-CchH---------------HHHHHHHcCCchh-----------hhcCcccchHHHH-HHHHHHHccCC
Q 004463 297 AGLYLPAKNHP-RLPW---------------FDLILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSR 348 (752)
Q Consensus 297 ~G~~vP~~~~~-~l~~---------------~d~i~~~ig~~~~-----------i~~~~stlSgg~k-rl~~i~~la~~ 348 (752)
.-.++||+... .-++ +.+++...+..+. +...-..|||||+ |++++++++.+
T Consensus 556 ~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~ 635 (711)
T TIGR00958 556 QVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRK 635 (711)
T ss_pred hceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 23466666410 0011 1222333333322 3334567999999 89999999999
Q ss_pred CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 349 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 349 ~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
|+++||||||+++|+.....+.. .....+.|+|++||+.+....||+++.+++|++...
T Consensus 636 p~ILILDEpTSaLD~~te~~i~~----~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~ 694 (711)
T TIGR00958 636 PRVLILDEATSALDAECEQLLQE----SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEM 694 (711)
T ss_pred CCEEEEEccccccCHHHHHHHHH----hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999988777665 122357899999999998888999999999988643
No 355
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.84 E-value=1.2e-20 Score=225.30 Aligned_cols=167 Identities=17% Similarity=0.158 Sum_probs=127.0
Q ss_pred CeEEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------------------hhhh
Q 004463 242 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 297 (752)
Q Consensus 242 ~~l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------~aq~ 297 (752)
+.++++||+++|++ .++ ++||++++| +.++|+||||||||||+|++ |+..+ +.+.
T Consensus 454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G-~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~ 532 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPEVLSNLNLDIKPG-EFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQ 532 (694)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHh
Confidence 56899999999963 334 999999999 99999999999999999999 54432 1122
Q ss_pred ceeecCCCCC-CchHHH---------------HHHHHcCC-----------chhhhcCcccchHHHH-HHHHHHHccCCC
Q 004463 298 GLYLPAKNHP-RLPWFD---------------LILADIGD-----------HQSLEQNLSTFSGHIS-RIVDILELVSRE 349 (752)
Q Consensus 298 G~~vP~~~~~-~l~~~d---------------~i~~~ig~-----------~~~i~~~~stlSgg~k-rl~~i~~la~~~ 349 (752)
..++|++... .-++.+ +.+...+. +..+......|||||+ |++++++++.+|
T Consensus 533 i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~ 612 (694)
T TIGR01846 533 MGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNP 612 (694)
T ss_pred CeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 3456665410 001111 22223333 2334455678999999 899999999999
Q ss_pred cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 350 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 350 ~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
+++||||||+++|+.....+...+.+. . .+.|+|++||+.+....||+++.+.+|++...
T Consensus 613 ~ililDEpts~LD~~~~~~i~~~l~~~-~-~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~ 672 (694)
T TIGR01846 613 RILIFDEATSALDYESEALIMRNMREI-C-RGRTVIIIAHRLSTVRACDRIIVLEKGQIAES 672 (694)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHH-h-CCCEEEEEeCChHHHHhCCEEEEEeCCEEEEe
Confidence 999999999999999999999866553 3 47899999999997778999999999988654
No 356
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.84 E-value=1.5e-20 Score=217.76 Aligned_cols=158 Identities=18% Similarity=0.238 Sum_probs=118.9
Q ss_pred CeEEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------------------hhhh
Q 004463 242 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 297 (752)
Q Consensus 242 ~~l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------~aq~ 297 (752)
+.++++||+++|++ +++ ++|+++++| +.++|+||||||||||+|++ |+..+ +.+.
T Consensus 319 ~~i~~~~v~f~y~~~~~~il~~i~l~i~~G-~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 319 PSLEFSGLSVAYPGRRAPALRPVSFTVPPG-ERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred CeEEEEEEEEECCCCCcccccceeEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhh
Confidence 36899999999975 244 999999999 99999999999999999999 54432 1122
Q ss_pred ceeecCCCCC-CchHHH---------------HHHHHcCCchh-----------hhcCcccchHHHH-HHHHHHHccCCC
Q 004463 298 GLYLPAKNHP-RLPWFD---------------LILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRE 349 (752)
Q Consensus 298 G~~vP~~~~~-~l~~~d---------------~i~~~ig~~~~-----------i~~~~stlSgg~k-rl~~i~~la~~~ 349 (752)
-.++|++... .-++.+ ..+...+..+. +.....+|||||+ |++++++++.+|
T Consensus 398 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~ 477 (529)
T TIGR02857 398 IAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA 477 (529)
T ss_pred eEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC
Confidence 3466665410 011122 22333343332 3345578999999 899999999999
Q ss_pred cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccc
Q 004463 350 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTR 402 (752)
Q Consensus 350 ~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~ 402 (752)
+++||||||+++|+.....+...+.+ +. .++|+|++||+++....||+++.
T Consensus 478 ~ililDE~ts~lD~~~~~~i~~~l~~-~~-~~~t~i~itH~~~~~~~~d~i~~ 528 (529)
T TIGR02857 478 PLLLLDEPTAHLDAETEALVTEALRA-LA-QGRTVLLVTHRLALAERADRIVV 528 (529)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHH-hc-CCCEEEEEecCHHHHHhCCEEEe
Confidence 99999999999999999999886655 33 47899999999987778887654
No 357
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.3e-20 Score=193.62 Aligned_cols=162 Identities=23% Similarity=0.330 Sum_probs=131.6
Q ss_pred ccccccCCeeEeeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------------hhhhce----------eecC
Q 004463 248 SLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------MSKAGL----------YLPA 303 (752)
Q Consensus 248 ~ls~~y~~~~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------~aq~G~----------~vP~ 303 (752)
|+.+.+|+..++++|.++.. .+++|.|++|+|||||+++| ||+.+ -+..|. ||.|
T Consensus 5 ~~~~~lG~~~l~a~~~~p~~-GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQ 83 (352)
T COG4148 5 NFRQRLGNFALDANFTLPAR-GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQ 83 (352)
T ss_pred ehhhhcCceEEEEeccCCCC-ceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEee
Confidence 45566677778999999874 59999999999999999999 66643 112233 3333
Q ss_pred CC--CC---------------CchHHHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHh
Q 004463 304 KN--HP---------------RLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 365 (752)
Q Consensus 304 ~~--~~---------------~l~~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~ 365 (752)
+. ++ ....||++...+|++..+++.+++||||++ |+++.+++.+.|.|||||||.+.||..-
T Consensus 84 DARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R 163 (352)
T COG4148 84 DARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163 (352)
T ss_pred ccccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch
Confidence 32 11 112389999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 366 GVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 366 ~~~L~~all~~l~~-~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
...++- .++.|.+ .+.-|+++||.++ +.++|++++.+.||++...
T Consensus 164 K~Eilp-ylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~ 210 (352)
T COG4148 164 KREILP-YLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKAS 210 (352)
T ss_pred hhHHHH-HHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEec
Confidence 999988 6666665 4678999999976 8889999999999998654
No 358
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.83 E-value=1.3e-20 Score=205.23 Aligned_cols=139 Identities=17% Similarity=0.125 Sum_probs=108.3
Q ss_pred EEcCCCCCHHHHHHHH-Hhhhhh-----------------hhhceeecCCCC--CCchHHH-------------------
Q 004463 273 ITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAKNH--PRLPWFD------------------- 313 (752)
Q Consensus 273 I~GpNGsGKSTlLK~i-Gli~~~-----------------aq~G~~vP~~~~--~~l~~~d------------------- 313 (752)
|+||||||||||||+| |+..+. .+...|+|+... ..+++.+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 6899999999999999 665431 111235666531 1222222
Q ss_pred --HHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 004463 314 --LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 390 (752)
Q Consensus 314 --~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~ 390 (752)
.++..+++.+..++.+++|||||+ |++++++++.+|+++||||||+|||+.....+...+.+...+.+.|+|++||+
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd 160 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 345566777778899999999999 89999999999999999999999999999999985555444458899999999
Q ss_pred hh-HHhhhcccccccCCceeec
Q 004463 391 AD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 391 ~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
.+ +..+|+++..+.+|++...
T Consensus 161 ~~e~~~~~d~i~vl~~G~i~~~ 182 (325)
T TIGR01187 161 QEEAMTMSDRIAIMRKGKIAQI 182 (325)
T ss_pred HHHHHHhCCEEEEEECCEEEEE
Confidence 87 5679999999999987543
No 359
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.83 E-value=4.7e-20 Score=203.60 Aligned_cols=157 Identities=22% Similarity=0.312 Sum_probs=122.1
Q ss_pred EEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchH----------
Q 004463 244 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW---------- 311 (752)
Q Consensus 244 l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~---------- 311 (752)
+.++++|++|.+..+ +..|++.+| +.++|+|||||||||+|++| .|..+|......+-.
T Consensus 76 vk~~sls~s~~g~~l~kd~~~El~~g-~rygLiG~nG~Gkst~L~~i--------~~~e~P~p~~~d~y~ls~e~~ps~~ 146 (614)
T KOG0927|consen 76 VKIESLSLSFHGVELIKDVTLELNRG-RRYGLIGPNGSGKSTFLRAI--------AGREVPIPEHIDFYLLSREIEPSEK 146 (614)
T ss_pred ceeeeeeeccCCceeeeeeeEEecCC-ceEEEEcCCCCcHhHHHHHH--------hcCCCCCCcccchhhhcccCCCchH
Confidence 468899999988776 999999999 89999999999999999999 666665443111100
Q ss_pred -----------------------------------HHH-------------------HHHHcC-CchhhhcCcccchHHH
Q 004463 312 -----------------------------------FDL-------------------ILADIG-DHQSLEQNLSTFSGHI 336 (752)
Q Consensus 312 -----------------------------------~d~-------------------i~~~ig-~~~~i~~~~stlSgg~ 336 (752)
++. ++..+| ......+.+..||||+
T Consensus 147 ~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGw 226 (614)
T KOG0927|consen 147 QAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGW 226 (614)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchH
Confidence 001 111122 2345678889999999
Q ss_pred H-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCc-EEEEEecchh-HHhhhcccccccCCceeeccC
Q 004463 337 S-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG-LAVVTTHYAD-LSCLKDKDTRFENAATEFSLE 413 (752)
Q Consensus 337 k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~-tviitTH~~~-l~~~a~~~~~i~~g~v~~~~~ 413 (752)
+ |+++++++..+|+||||||||+|||+....-|.. +|.+... ++++++|+.+ +..+|.+++.+.++...++.+
T Consensus 227 rmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee----~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~G 302 (614)
T KOG0927|consen 227 RMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEE----YLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEG 302 (614)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHH----HHHhccCceEEEEecchhhhhhHhhhhheecccceeeecC
Confidence 9 9999999999999999999999999977665554 5555455 8999999999 778999999999888666644
No 360
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=3.8e-20 Score=184.25 Aligned_cols=160 Identities=15% Similarity=0.258 Sum_probs=126.2
Q ss_pred EEEcccccccCC-----eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCC-----------
Q 004463 244 MTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKN----------- 305 (752)
Q Consensus 244 l~~~~ls~~y~~-----~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~----------- 305 (752)
+.+.|+++.|.. +++ .+++++..| +++.|+|.||+||||||++| +|-..|.+|
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g-~FvtViGsNGAGKSTlln~i--------aG~l~~t~G~I~Idg~dVtk 72 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEG-DFVTVIGSNGAGKSTLLNAI--------AGDLKPTSGQILIDGVDVTK 72 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCC-ceEEEEcCCCccHHHHHHHh--------hCccccCCceEEECceeccc
Confidence 344555555532 222 899999999 99999999999999999999 444444443
Q ss_pred ---------------------CCCchHHHHH---------------------------HHH--cCCchhhhcCcccchHH
Q 004463 306 ---------------------HPRLPWFDLI---------------------------LAD--IGDHQSLEQNLSTFSGH 335 (752)
Q Consensus 306 ---------------------~~~l~~~d~i---------------------------~~~--ig~~~~i~~~~stlSgg 335 (752)
+..+++.+++ ++. .|++..+..++.-||||
T Consensus 73 ~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGG 152 (263)
T COG1101 73 KSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGG 152 (263)
T ss_pred CCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccch
Confidence 1223333332 222 35667788999999999
Q ss_pred HHH-HHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeecc
Q 004463 336 ISR-IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 412 (752)
Q Consensus 336 ~kr-l~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~~ 412 (752)
++| ++++++.+++|.++||||-|+.|||.....++...-+...+.+.|.+|+||+++ -..|.++.+.+++|.++.|.
T Consensus 153 QRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 153 QRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred HHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 995 889999999999999999999999999999999777777777889999999988 45689999999999998873
No 361
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.7e-20 Score=206.01 Aligned_cols=279 Identities=15% Similarity=0.128 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCceeEEecCeEEEEEecccccCCCCcEEEEEcCCCCEEEecccchhhhHHHHHHHhHH
Q 004463 63 MENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNS 142 (752)
Q Consensus 63 ~~~l~~~l~~~~~~~~~~~~~~~~~i~~r~~r~vl~vk~~~~~~~~~g~v~~~s~sg~t~y~ep~~~v~lnn~~~~l~~~ 142 (752)
..||+.+|.. |...+++++|||-||.-.+.......+--+--|.+ ++.-|+....- ...|+..+..
T Consensus 234 v~WLe~yL~t----------~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkG-N~~~Fvk~k~E-~~~n~qrefe-- 299 (582)
T KOG0062|consen 234 VAWLENYLQT----------WKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKG-NYSQFVKTKPE-AKKNQQREFE-- 299 (582)
T ss_pred HHHHHHHHhh----------CCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcC-cHHHHHHhhHH-hhhhhhhhcc--
Confidence 5899888876 44678999999988876655444333111222333 45555443211 1122222221
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCCCCCcceeeEcc----ccCCccc
Q 004463 143 EIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEG----IKHPLLL 218 (752)
Q Consensus 143 e~~ee~~il~~l~~~i~~~~~~l~~~~~~~~~lD~l~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~----~rHPll~ 218 (752)
.+...+.++ ..++.+++....++...-++|.++ -.+..-.|...+... .+.++. .-||.
T Consensus 300 ~q~~~R~h~---q~fid~FrYna~ra~svqSRIk~L-------~kl~~lk~~~~~~~~-----~~~fP~~~e~~~~p~-- 362 (582)
T KOG0062|consen 300 VQMKYRAHL---QVFIDKFRYNAARASSVQSRIKML-------GKLPALKSTLIEVLI-----GFLFPTEGEVLSPPN-- 362 (582)
T ss_pred hHHHHHHHH---HHHHHHhccCcccchhHHHHHHHh-------ccCCCCCccceeccc-----ceecCCCCCcCCCCe--
Confidence 111222233 334444444444444333333322 223333444433211 133332 33444
Q ss_pred cccccccccccCCCCCCCCccCCCeEEEcccccccCCee--E--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhh
Q 004463 219 GSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFP--V--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLM 294 (752)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~ls~~y~~~~--v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~ 294 (752)
+++.+|+|.|.... + .+++..+.. ..++++|+||+||||+||++
T Consensus 363 -------------------------l~i~~V~f~y~p~~y~~~~~~~~d~e~~-sRi~~vg~ng~gkst~lKi~------ 410 (582)
T KOG0062|consen 363 -------------------------LRISYVAFEYTPSEYQWRKQLGLDRESD-SRISRVGENGDGKSTLLKIL------ 410 (582)
T ss_pred -------------------------eEEEeeeccCCCcchhhhhccCCccchh-hhhheeccCchhHHHHHHHH------
Confidence 45778888886433 3 556666656 67899999999999999999
Q ss_pred hhhceeecCCCC------CCchH------------------------------HHHHHHHcCCc-hhhhcCcccchHHHH
Q 004463 295 SKAGLYLPAKNH------PRLPW------------------------------FDLILADIGDH-QSLEQNLSTFSGHIS 337 (752)
Q Consensus 295 aq~G~~vP~~~~------~~l~~------------------------------~d~i~~~ig~~-~~i~~~~stlSgg~k 337 (752)
.|-.-|..+. ..+.+ +..-+.++|+. +...+++.+|||||+
T Consensus 411 --~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQK 488 (582)
T KOG0062|consen 411 --KGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQK 488 (582)
T ss_pred --hccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcch
Confidence 3333333221 11111 12235667764 455677899999999
Q ss_pred -HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 004463 338 -RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 410 (752)
Q Consensus 338 -rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~ 410 (752)
|+++|.....+|.||+||||||+||..+-.+|+.|+-.+ ++-||++|||.+ +..+|...+.+.+|.|.-
T Consensus 489 srvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F----~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 489 SRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF----NGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred hHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc----CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 999999999999999999999999999999999988777 889999999988 556999999999999864
No 362
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.81 E-value=8.2e-20 Score=211.59 Aligned_cols=147 Identities=22% Similarity=0.257 Sum_probs=109.9
Q ss_pred CeEEEcccccccCC-eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------------------hhhce
Q 004463 242 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGL 299 (752)
Q Consensus 242 ~~l~~~~ls~~y~~-~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------aq~G~ 299 (752)
+.++++||+|+|++ .++ ++||++++| +.++|+||||||||||+|++ |+..+- .+.-.
T Consensus 333 ~~I~~~~vsf~Y~~~~~vL~~isl~i~~G-~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~ 411 (529)
T TIGR02868 333 PTLELRDLSFGYPGSPPVLDGVSLDLPPG-ERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRIS 411 (529)
T ss_pred ceEEEEEEEEecCCCCceeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheE
Confidence 45899999999975 344 999999999 99999999999999999999 554321 11234
Q ss_pred eecCCCCC-CchHHH---------------HHHHHcCCchhhh-----------cCcccchHHHH-HHHHHHHccCCCcE
Q 004463 300 YLPAKNHP-RLPWFD---------------LILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSRESL 351 (752)
Q Consensus 300 ~vP~~~~~-~l~~~d---------------~i~~~ig~~~~i~-----------~~~stlSgg~k-rl~~i~~la~~~~L 351 (752)
++||+... .-++.+ +.+...+..+.+. ..-..|||||+ |+++|++++.+|++
T Consensus 412 ~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~i 491 (529)
T TIGR02868 412 VFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPI 491 (529)
T ss_pred EEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCE
Confidence 67776520 001122 2333344443332 33467999999 89999999999999
Q ss_pred EEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecch
Q 004463 352 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 391 (752)
Q Consensus 352 lLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~ 391 (752)
+||||||+++|+.....+...+.+ + ..+.|+|++||++
T Consensus 492 liLDE~TSaLD~~te~~I~~~l~~-~-~~~~TvIiItHrl 529 (529)
T TIGR02868 492 LLLDEPTEHLDAGTESELLEDLLA-A-LSGKTVVVITHHL 529 (529)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHH-h-cCCCEEEEEecCC
Confidence 999999999999999999886654 3 3468999999973
No 363
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=5.4e-20 Score=197.32 Aligned_cols=153 Identities=23% Similarity=0.315 Sum_probs=117.8
Q ss_pred eEEEcccccccCC-eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCC------CCchHHH
Q 004463 243 EMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH------PRLPWFD 313 (752)
Q Consensus 243 ~l~~~~ls~~y~~-~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~------~~l~~~d 313 (752)
++-+.+|+|+|++ +++ .+||-|.-. ..++|+||||.||||||+++ .|-.-|.+|. ..+++|+
T Consensus 586 vLGlH~VtFgy~gqkpLFkkldFGiDmd-SRiaIVGPNGVGKSTlLkLL--------~Gkl~P~~GE~RKnhrL~iG~Fd 656 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQKPLFKKLDFGIDMD-SRIAIVGPNGVGKSTLLKLL--------IGKLDPNDGELRKNHRLRIGWFD 656 (807)
T ss_pred eeecccccccCCCCCchhhccccccccc-ceeEEECCCCccHHHHHHHH--------hcCCCCCcchhhccceeeeechh
Confidence 4557899999954 444 888888777 78999999999999999999 7777777762 3455555
Q ss_pred HH-----------------------------HHHcCCchhh-hcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCC
Q 004463 314 LI-----------------------------LADIGDHQSL-EQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 362 (752)
Q Consensus 314 ~i-----------------------------~~~ig~~~~i-~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD 362 (752)
+- +..+|+.... .-.+..||||++ |++++-..+..|++|||||||++||
T Consensus 657 Qh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLD 736 (807)
T KOG0066|consen 657 QHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLD 736 (807)
T ss_pred hhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcc
Confidence 32 2233332222 235678999999 9999977789999999999999999
Q ss_pred hHhHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhcccccccCCce
Q 004463 363 PSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAAT 408 (752)
Q Consensus 363 ~~~~~~L~~all~~l~~~~~tviitTH~~~l~-~~a~~~~~i~~g~v 408 (752)
+.+..+|+.||-+| .+.|||+|||..|. ..-...+++.+..+
T Consensus 737 IESIDALaEAIney----~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 737 IESIDALAEAINEY----NGGVIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred hhhHHHHHHHHHhc----cCcEEEEecccceeeecCceEEEEccCCh
Confidence 99999999999998 88999999997744 34445566666554
No 364
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.80 E-value=1.9e-19 Score=210.31 Aligned_cols=166 Identities=18% Similarity=0.219 Sum_probs=126.3
Q ss_pred CeEEEcccccccC-CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh--------------------hhhh
Q 004463 242 SEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------------------MSKA 297 (752)
Q Consensus 242 ~~l~~~~ls~~y~-~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~--------------------~aq~ 297 (752)
+.++++||+++|+ ++++ ++||++++| +.++|+||+||||||+++.+ ++..+ ..+.
T Consensus 327 ~~I~f~~vsf~y~~~~~vl~~is~~i~~G-e~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I 405 (567)
T COG1132 327 GSIEFENVSFSYPGKKPVLKDISFSIEPG-EKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRI 405 (567)
T ss_pred CeEEEEEEEEEcCCCCccccCceEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhc
Confidence 4488999999998 4555 899999999 99999999999999999999 33322 2233
Q ss_pred ceeecCCCCC-CchHHHHH------------------------HHHc--CCchhhhcCcccchHHHH-HHHHHHHccCCC
Q 004463 298 GLYLPAKNHP-RLPWFDLI------------------------LADI--GDHQSLEQNLSTFSGHIS-RIVDILELVSRE 349 (752)
Q Consensus 298 G~~vP~~~~~-~l~~~d~i------------------------~~~i--g~~~~i~~~~stlSgg~k-rl~~i~~la~~~ 349 (752)
+ +|||+... .-++.+++ +..+ |.+..+...-..|||||+ |+++|++++.+|
T Consensus 406 ~-~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~ 484 (567)
T COG1132 406 G-IVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNP 484 (567)
T ss_pred c-EEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 4 66665410 01111111 1222 233344455678999999 899999999999
Q ss_pred cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 350 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 350 ~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
++|||||||+++|+.+-..+..++.+ +. ++.|+|+++|.+.....||+++.+++|++...
T Consensus 485 ~ILILDEaTSalD~~tE~~I~~~l~~-l~-~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~ 544 (567)
T COG1132 485 PILILDEATSALDTETEALIQDALKK-LL-KGRTTLIIAHRLSTIKNADRIIVLDNGRIVER 544 (567)
T ss_pred CEEEEeccccccCHHhHHHHHHHHHH-Hh-cCCEEEEEeccHhHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999997764 44 35699999999986666999999999996543
No 365
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=1.5e-19 Score=170.47 Aligned_cols=151 Identities=18% Similarity=0.215 Sum_probs=123.2
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh---------------------hhhh
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------MSKA 297 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~---------------------~aq~ 297 (752)
+|+.++||+...++..+ ++|++|.+| +++-|.||+||||||||.-+ |-+.. ..|.
T Consensus 1 ~~l~l~nvsl~l~g~cLLa~~n~Tia~G-eivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~ 79 (213)
T COG4136 1 GMLCLKNVSLRLPGSCLLANVNFTIAKG-EIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQI 79 (213)
T ss_pred CceeeeeeeecCCCceEEEeeeEEecCC-cEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhe
Confidence 46788999998888876 899999999 99999999999999999988 44421 1244
Q ss_pred ceeecCCC--CCCch--------------------HHHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEE
Q 004463 298 GLYLPAKN--HPRLP--------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 354 (752)
Q Consensus 298 G~~vP~~~--~~~l~--------------------~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLL 354 (752)
|+.. ++. +..++ ..+..++++|+....++.+.|+|||++ |+++.++++..|.++||
T Consensus 80 GiLF-QD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLL 158 (213)
T COG4136 80 GILF-QDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLL 158 (213)
T ss_pred eeee-cccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeee
Confidence 4321 111 11111 134557889999999999999999999 99999999999999999
Q ss_pred eCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHH
Q 004463 355 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS 394 (752)
Q Consensus 355 DEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~ 394 (752)
|||++.||..-+..+-+-+...+...|.-+|++|||+.-.
T Consensus 159 DEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dv 198 (213)
T COG4136 159 DEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDV 198 (213)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccC
Confidence 9999999999999998878888888899999999997643
No 366
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.80 E-value=2.4e-19 Score=226.85 Aligned_cols=170 Identities=15% Similarity=0.185 Sum_probs=133.3
Q ss_pred CCCeEEEcccccccC----CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhh---hh---------------
Q 004463 240 ENSEMTVGSLSKGIS----DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS---LM--------------- 294 (752)
Q Consensus 240 g~~~l~~~~ls~~y~----~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~---~~--------------- 294 (752)
|..+++++||++.|+ ++.+ ++|+.+.+| ++++|+|||||||||||++| |++. +.
T Consensus 756 ~~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~G-e~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~ 834 (1394)
T TIGR00956 756 GEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPG-TLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSF 834 (1394)
T ss_pred CCceEEEEeeEEEecCCCCCcEeeeCCEEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhh
Confidence 445789999999985 3345 999999999 99999999999999999999 6653 11
Q ss_pred hhhceeecCCCC--CCchH------------------------HHHHHHHcCCchhhhcCcc----cchHHHH-HHHHHH
Q 004463 295 SKAGLYLPAKNH--PRLPW------------------------FDLILADIGDHQSLEQNLS----TFSGHIS-RIVDIL 343 (752)
Q Consensus 295 aq~G~~vP~~~~--~~l~~------------------------~d~i~~~ig~~~~i~~~~s----tlSgg~k-rl~~i~ 343 (752)
.+.-.|+|++.. ..+++ +++++..+|+.+..++.+. .|||||+ |+.+++
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~ 914 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGV 914 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHH
Confidence 112247777531 11122 2345666677666677666 7999999 899999
Q ss_pred HccCCCc-EEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH--HhhhcccccccCC-ceeec
Q 004463 344 ELVSRES-LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL--SCLKDKDTRFENA-ATEFS 411 (752)
Q Consensus 344 ~la~~~~-LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l--~~~a~~~~~i~~g-~v~~~ 411 (752)
+++.+|+ +|||||||+|||+.....+.. +++.+.+.|.|||++||++.. ...+|++..+.+| ++.+.
T Consensus 915 aL~~~P~~iLlLDEPTsgLD~~~~~~i~~-~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~ 985 (1394)
T TIGR00956 915 ELVAKPKLLLFLDEPTSGLDSQTAWSICK-LMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYF 985 (1394)
T ss_pred HHHcCCCeEEEEcCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEE
Confidence 9999996 999999999999999999988 666677778999999999873 4678999999887 77664
No 367
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.80 E-value=2.2e-19 Score=227.52 Aligned_cols=163 Identities=13% Similarity=0.125 Sum_probs=123.0
Q ss_pred eEEEcccccccCCe---eE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh--------------------hh
Q 004463 243 EMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SK 296 (752)
Q Consensus 243 ~l~~~~ls~~y~~~---~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------------aq 296 (752)
.|+++||+|+|++. ++ ++||++++| ++++|+||||||||||+++| |+..+. .+
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~G-e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~ 460 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEG-KTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRS 460 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCC-CEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHH
Confidence 58899999999752 34 999999999 99999999999999999999 554320 11
Q ss_pred hceeecCCCCC-CchHHHHHH-----------------------------------------------------------
Q 004463 297 AGLYLPAKNHP-RLPWFDLIL----------------------------------------------------------- 316 (752)
Q Consensus 297 ~G~~vP~~~~~-~l~~~d~i~----------------------------------------------------------- 316 (752)
.-.+||++... ..++.+++.
T Consensus 461 ~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 540 (1466)
T PTZ00265 461 KIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKN 540 (1466)
T ss_pred hccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccc
Confidence 12356665310 012223321
Q ss_pred -------------HHcCCchh-----------hhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHH
Q 004463 317 -------------ADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALAT 371 (752)
Q Consensus 317 -------------~~ig~~~~-----------i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~ 371 (752)
..+++.+. +....+.|||||+ |++++++++.+|++|||||||++||+.....+..
T Consensus 541 ~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~ 620 (1466)
T PTZ00265 541 YQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQK 620 (1466)
T ss_pred cccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH
Confidence 11222222 2355689999999 8999999999999999999999999999998888
Q ss_pred HHHHHHhc-CCcEEEEEecchhHHhhhcccccccCCc
Q 004463 372 SILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAA 407 (752)
Q Consensus 372 all~~l~~-~~~tviitTH~~~l~~~a~~~~~i~~g~ 407 (752)
++.+ +.+ .|.|+|++||+++....||+++.+.+|+
T Consensus 621 ~L~~-~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~ 656 (1466)
T PTZ00265 621 TINN-LKGNENRITIIIAHRLSTIRYANTIFVLSNRE 656 (1466)
T ss_pred HHHH-HhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCc
Confidence 5544 543 5889999999998778999999998874
No 368
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.79 E-value=7.2e-19 Score=193.30 Aligned_cols=173 Identities=24% Similarity=0.287 Sum_probs=132.5
Q ss_pred CCCccCCCeEEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh----------------
Q 004463 235 LKSDVENSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------- 293 (752)
Q Consensus 235 ~~~~~g~~~l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~---------------- 293 (752)
++....++.+.++++++.-++ +++ +++|.+.+| +.++|+||+|||||||.|++ |...+
T Consensus 326 m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G-~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd 404 (580)
T COG4618 326 MPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAG-EALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWD 404 (580)
T ss_pred CCCCCCCceeeEeeeeecCCCCCCcceecceeEecCC-ceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCC
Confidence 334445678999999987654 233 999999999 99999999999999999999 44332
Q ss_pred ---hhhhceeecCCCCCCc--hHHHHHHHHcC---------------------------CchhhhcCcccchHHHH-HHH
Q 004463 294 ---MSKAGLYLPAKNHPRL--PWFDLILADIG---------------------------DHQSLEQNLSTFSGHIS-RIV 340 (752)
Q Consensus 294 ---~aq~G~~vP~~~~~~l--~~~d~i~~~ig---------------------------~~~~i~~~~stlSgg~k-rl~ 340 (752)
+++...|.||+-. -+ ++-++| ++|+ -+..+-..-++||||++ |++
T Consensus 405 ~e~lG~hiGYLPQdVe-LF~GTIaeNI-aRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIa 482 (580)
T COG4618 405 REQLGRHIGYLPQDVE-LFDGTIAENI-ARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIA 482 (580)
T ss_pred HHHhccccCcCcccce-ecCCcHHHHH-HhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHH
Confidence 1222235555421 00 011121 2222 22344456689999999 999
Q ss_pred HHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 341 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 341 ~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
+++++-.+|.||+||||-++||...-.+|+.+|+. ++.+|+|+|++||.+.+...+|++..+.+|.+...
T Consensus 483 LARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~-~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~F 552 (580)
T COG4618 483 LARALYGDPFLVVLDEPNSNLDSEGEAALAAAILA-AKARGGTVVVIAHRPSALASVDKILVLQDGRIAAF 552 (580)
T ss_pred HHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHH-HHHcCCEEEEEecCHHHHhhcceeeeecCChHHhc
Confidence 99999999999999999999999999999997766 78889999999999999999999999999998654
No 369
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.79 E-value=4.8e-19 Score=179.63 Aligned_cols=137 Identities=18% Similarity=0.157 Sum_probs=102.0
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh--------------------------hhhceeecCCCCCCch-
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------------SKAGLYLPAKNHPRLP- 310 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------------------aq~G~~vP~~~~~~l~- 310 (752)
++++++.+| +++|+||||+||||||+++ |++... ++. .++|+.....++
T Consensus 15 ~~~l~~~~g--~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~vfq~~~~~~~~ 91 (197)
T cd03278 15 KTTIPFPPG--LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEV-TLTFDNSDGRYSI 91 (197)
T ss_pred CeeeecCCC--cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEE-EEEEEcCCCceeE
Confidence 567888887 8999999999999999999 554110 112 245554422221
Q ss_pred ----HHHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHcc----CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCC
Q 004463 311 ----WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV 381 (752)
Q Consensus 311 ----~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la----~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~ 381 (752)
-.+.++.. .+..++.+.+||+||+ |++++++++ .+|+++|||||++|+|+.....+.. ++..+.+ +
T Consensus 92 ~~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~-~l~~~~~-~ 166 (197)
T cd03278 92 ISQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFAR-LLKEFSK-E 166 (197)
T ss_pred EehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHH-HHHHhcc-C
Confidence 13444444 4456788999999999 788888765 5779999999999999999999998 5555555 6
Q ss_pred cEEEEEecchhHHhhhcccccc
Q 004463 382 GLAVVTTHYADLSCLKDKDTRF 403 (752)
Q Consensus 382 ~tviitTH~~~l~~~a~~~~~i 403 (752)
.++|++||++++..+|++++.+
T Consensus 167 ~tiIiitH~~~~~~~~d~v~~~ 188 (197)
T cd03278 167 TQFIVITHRKGTMEAADRLYGV 188 (197)
T ss_pred CEEEEEECCHHHHhhcceEEEE
Confidence 8999999999877788877654
No 370
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.79 E-value=3.6e-19 Score=213.78 Aligned_cols=160 Identities=19% Similarity=0.231 Sum_probs=122.1
Q ss_pred CCCeEEEcccccccCCee---E--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCch----
Q 004463 240 ENSEMTVGSLSKGISDFP---V--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP---- 310 (752)
Q Consensus 240 g~~~l~~~~ls~~y~~~~---v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~---- 310 (752)
-++.++++||.|+|+.++ | +++|.+++| +.++|+|||||||||+++++ .++|-|..|.+.+.
T Consensus 347 ~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G-~~valVG~SGsGKST~i~LL--------~RfydP~~G~V~idG~di 417 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSG-QTVALVGPSGSGKSTLIQLL--------ARFYDPTSGEVLIDGEDI 417 (1228)
T ss_pred cccceEEEEEEecCCCCCcchhhCCeEEEeCCC-CEEEEECCCCCCHHHHHHHH--------HHhcCCCCceEEEcCccc
Confidence 456799999999998765 3 899999999 99999999999999999999 66666666521111
Q ss_pred -------------------------HHHHHH---------------HHc-----------CCchhhhcCcccchHHHH-H
Q 004463 311 -------------------------WFDLIL---------------ADI-----------GDHQSLEQNLSTFSGHIS-R 338 (752)
Q Consensus 311 -------------------------~~d~i~---------------~~i-----------g~~~~i~~~~stlSgg~k-r 338 (752)
+.++|. ... |.+-.+-..--+|||||| |
T Consensus 418 ~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQR 497 (1228)
T KOG0055|consen 418 RNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQR 497 (1228)
T ss_pred hhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHH
Confidence 112220 000 111112223345999999 9
Q ss_pred HHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 004463 339 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 339 l~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~ 410 (752)
+++|++++.+|++|||||||++||+.+...+..|| +.... |.|+|+++|.+...+-+|.+..+++|.++-
T Consensus 498 IAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~AL-d~~~~-grTTivVaHRLStIrnaD~I~v~~~G~IvE 567 (1228)
T KOG0055|consen 498 IAIARALVRNPKILLLDEATSALDAESERVVQEAL-DKASK-GRTTIVVAHRLSTIRNADKIAVMEEGKIVE 567 (1228)
T ss_pred HHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHH-HHhhc-CCeEEEEeeehhhhhccCEEEEEECCEEEE
Confidence 99999999999999999999999999888777754 54443 779999999998666699999999998743
No 371
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.79 E-value=4.5e-19 Score=224.75 Aligned_cols=166 Identities=15% Similarity=0.189 Sum_probs=124.1
Q ss_pred CeEEEcccccccCC---eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh---------------------
Q 004463 242 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 294 (752)
Q Consensus 242 ~~l~~~~ls~~y~~---~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------------- 294 (752)
+.++++||+|+|++ .+| ++||++++| +.++|+||+||||||++++| |+..+.
T Consensus 1164 g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G-~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~ 1242 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISRPNVPIYKDLTFSCDSK-KTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDY 1242 (1466)
T ss_pred ceEEEEEEEEECCCCCCCccccCeeEEEcCC-CEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccc
Confidence 46899999999963 345 999999999 99999999999999999999 554430
Q ss_pred ----------------------------------------------------hhhceeecCCCCC-CchHHHHH------
Q 004463 295 ----------------------------------------------------SKAGLYLPAKNHP-RLPWFDLI------ 315 (752)
Q Consensus 295 ----------------------------------------------------aq~G~~vP~~~~~-~l~~~d~i------ 315 (752)
.+.-.+|||+... .-++.++|
T Consensus 1243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~ 1322 (1466)
T PTZ00265 1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKED 1322 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCC
Confidence 1112345554310 01112222
Q ss_pred ---------HHHcCCchh-----------hhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHH
Q 004463 316 ---------LADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSIL 374 (752)
Q Consensus 316 ---------~~~ig~~~~-----------i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all 374 (752)
+...+..+. +...-..|||||+ |+++|++++.+|++|||||||++||+.....+..++.
T Consensus 1323 at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~ 1402 (1466)
T PTZ00265 1323 ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIV 1402 (1466)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHH
Confidence 222233222 2334568999999 8999999999999999999999999999888888665
Q ss_pred HHHh-cCCcEEEEEecchhHHhhhcccccccC----Ccee
Q 004463 375 QYLR-DRVGLAVVTTHYADLSCLKDKDTRFEN----AATE 409 (752)
Q Consensus 375 ~~l~-~~~~tviitTH~~~l~~~a~~~~~i~~----g~v~ 409 (752)
+ +. ..+.|+|++||.+.....||+++.+.+ |++.
T Consensus 1403 ~-~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv 1441 (1466)
T PTZ00265 1403 D-IKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFV 1441 (1466)
T ss_pred H-HhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEE
Confidence 4 43 357899999999998888999999998 7744
No 372
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=4e-19 Score=203.18 Aligned_cols=161 Identities=18% Similarity=0.219 Sum_probs=125.1
Q ss_pred CCCeEEEcccccccCCee---E--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCch----
Q 004463 240 ENSEMTVGSLSKGISDFP---V--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP---- 310 (752)
Q Consensus 240 g~~~l~~~~ls~~y~~~~---v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~---- 310 (752)
..|.++++||+|.|+.++ | +++|+|++| ++++|+||||+||||+..++ --+|-|++|...+.
T Consensus 462 ~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pG-e~vALVGPSGsGKSTiasLL--------~rfY~PtsG~IllDG~~i 532 (716)
T KOG0058|consen 462 LQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPG-EVVALVGPSGSGKSTIASLL--------LRFYDPTSGRILLDGVPI 532 (716)
T ss_pred ccceEEEEEeeeecCCCCCchhhcCceeeeCCC-CEEEEECCCCCCHHHHHHHH--------HHhcCCCCCeEEECCeeh
Confidence 357899999999998654 4 999999999 99999999999999999999 55555655521111
Q ss_pred -------------------------HHHHH------------------------HHHc--CCchhhhcCcccchHHHH-H
Q 004463 311 -------------------------WFDLI------------------------LADI--GDHQSLEQNLSTFSGHIS-R 338 (752)
Q Consensus 311 -------------------------~~d~i------------------------~~~i--g~~~~i~~~~stlSgg~k-r 338 (752)
+-++| ...+ |-+-.+...-++|||||| |
T Consensus 533 ~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQR 612 (716)
T KOG0058|consen 533 SDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQR 612 (716)
T ss_pred hhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHH
Confidence 11222 1111 112233456679999999 9
Q ss_pred HHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 339 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 339 l~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
+++|++++.+|.+|||||.||.||.++-..+.+++ +.+.+ +.|||++.|.+...+-|+.+..+++|++.-.
T Consensus 613 IAIARALlr~P~VLILDEATSALDaeSE~lVq~aL-~~~~~-~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~ 683 (716)
T KOG0058|consen 613 IAIARALLRNPRVLILDEATSALDAESEYLVQEAL-DRLMQ-GRTVLVIAHRLSTVRHADQIVVIDKGRVVEM 683 (716)
T ss_pred HHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHH-HHhhc-CCeEEEEehhhhHhhhccEEEEEcCCeEEec
Confidence 99999999999999999999999998877777644 44444 4899999999999999999999999998643
No 373
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.78 E-value=4e-19 Score=216.31 Aligned_cols=167 Identities=23% Similarity=0.295 Sum_probs=135.3
Q ss_pred CeEEEcccccccCCee--E-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh---------------------hh
Q 004463 242 SEMTVGSLSKGISDFP--V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SK 296 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~--v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~---------------------aq 296 (752)
..+.++++++.|+... | .+++.+++| ++.++.||||+||||++|++ |...+- .+
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~g-ecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPG-ECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCC-ceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence 3577899999998764 6 999999999 99999999999999999999 544321 11
Q ss_pred hceeecCCCC--CCch---------------------HHHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEE
Q 004463 297 AGLYLPAKNH--PRLP---------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 352 (752)
Q Consensus 297 ~G~~vP~~~~--~~l~---------------------~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~Ll 352 (752)
+| |.||... ..++ .++.++..+|+....++.++++|||+| |++.+.+++.+|+++
T Consensus 642 iG-yCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi 720 (885)
T KOG0059|consen 642 LG-YCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVI 720 (885)
T ss_pred cc-cCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEE
Confidence 22 5555420 0011 134456677888889999999999999 799999999999999
Q ss_pred EEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhcccccccCCceeec
Q 004463 353 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC-LKDKDTRFENAATEFS 411 (752)
Q Consensus 353 LLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~-~a~~~~~i~~g~v~~~ 411 (752)
+||||++|+||..+..++. ++..+.+.|..+|+|||+++.++ +|++...|.+|++..-
T Consensus 721 ~LDEPstGmDP~arr~lW~-ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ci 779 (885)
T KOG0059|consen 721 LLDEPSTGLDPKARRHLWD-IIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCI 779 (885)
T ss_pred EecCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEe
Confidence 9999999999999999888 66667776669999999998655 9999999999998764
No 374
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.78 E-value=2.2e-18 Score=176.79 Aligned_cols=159 Identities=20% Similarity=0.206 Sum_probs=106.2
Q ss_pred EEEcccccccCCeeEeeeEEEc-cCceEEEEEcCCCCCHHHHHHHHH-hh-hh-----h----h----------hhceee
Q 004463 244 MTVGSLSKGISDFPVPIDIKVE-CETRVVVITGPNTGGKTASMKTLG-LA-SL-----M----S----------KAGLYL 301 (752)
Q Consensus 244 l~~~~ls~~y~~~~v~idl~l~-~g~~~~~I~GpNGsGKSTlLK~iG-li-~~-----~----a----------q~G~~v 301 (752)
|+++|.. +|.+. ..++|... +| ++++|+|||||||||+|++|. .+ -. . . .++ ++
T Consensus 6 i~l~nf~-~y~~~-~~i~~~~~~~~-~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~-~~ 81 (213)
T cd03279 6 LELKNFG-PFREE-QVIDFTGLDNN-GLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVS-FT 81 (213)
T ss_pred EEEECCc-CcCCc-eEEeCCCCCcc-CEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEE-EE
Confidence 5566666 44332 24445433 35 799999999999999999992 11 00 0 0 001 11
Q ss_pred cCCCCC--------Cch--HHHHH--HHHcCCchhhhcCcccchHHHH-HHHHHHHccC----------CCcEEEEeCCC
Q 004463 302 PAKNHP--------RLP--WFDLI--LADIGDHQSLEQNLSTFSGHIS-RIVDILELVS----------RESLVLIDEIG 358 (752)
Q Consensus 302 P~~~~~--------~l~--~~d~i--~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~----------~~~LlLLDEp~ 358 (752)
++.... .++ -+... +...+....+++.+.+||+||+ |++++++++. +|+++||||||
T Consensus 82 f~~~~~~~~~~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~ 161 (213)
T cd03279 82 FQLGGKKYRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGF 161 (213)
T ss_pred EEECCeEEEEEEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCc
Confidence 111100 011 12221 1222356677899999999999 8888888874 57899999999
Q ss_pred CCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHH-hhhcccccccCCc
Q 004463 359 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAA 407 (752)
Q Consensus 359 ~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~-~~a~~~~~i~~g~ 407 (752)
+|+|+.....+.. ++..+.+.+.|+|++||++++. .++++...+.+|.
T Consensus 162 ~~lD~~~~~~~~~-~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 162 GTLDPEALEAVAT-ALELIRTENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred ccCCHHHHHHHHH-HHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 9999999999988 4556666688999999998844 5777777777764
No 375
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.6e-18 Score=166.70 Aligned_cols=152 Identities=20% Similarity=0.324 Sum_probs=120.2
Q ss_pred eEEEccccccc-----CCe--eE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCC------
Q 004463 243 EMTVGSLSKGI-----SDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP------ 307 (752)
Q Consensus 243 ~l~~~~ls~~y-----~~~--~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~------ 307 (752)
++.++|++|+| ++. +| +++|++..| +++++-||+|+||||+||++ .|-|.|++|..
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aG-ECvvL~G~SG~GKStllr~L--------YaNY~~d~G~I~v~H~g 74 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAG-ECVVLHGPSGSGKSTLLRSL--------YANYLPDEGQILVRHEG 74 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCc-cEEEeeCCCCCcHHHHHHHH--------HhccCCCCceEEEEeCc
Confidence 46678888888 232 23 899999999 99999999999999999999 77777776621
Q ss_pred -------------------CchHHH----------------------------------HHHHHcCCch-hhhcCcccch
Q 004463 308 -------------------RLPWFD----------------------------------LILADIGDHQ-SLEQNLSTFS 333 (752)
Q Consensus 308 -------------------~l~~~d----------------------------------~i~~~ig~~~-~i~~~~stlS 333 (752)
+++|+. .+++++++.. ...-.++|||
T Consensus 75 ~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFS 154 (235)
T COG4778 75 EWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFS 154 (235)
T ss_pred chhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccC
Confidence 222222 2345555433 3456889999
Q ss_pred HHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhccccccc
Q 004463 334 GHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC-LKDKDTRFE 404 (752)
Q Consensus 334 gg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~-~a~~~~~i~ 404 (752)
||++ |+.+++.++.+-.+|||||||+.||...+..... ++..-+.+|+.+|=+=||.+..+ .||+...+.
T Consensus 155 GGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVve-li~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 155 GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVE-LIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred CchheehhhhhhhhccCceEEecCCcccccccchHHHHH-HHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 9999 8999999999999999999999999999999988 66667788999999999999765 788776554
No 376
>PLN03140 ABC transporter G family member; Provisional
Probab=99.77 E-value=2e-18 Score=218.27 Aligned_cols=167 Identities=17% Similarity=0.205 Sum_probs=128.3
Q ss_pred eEEEcccccccC-------------CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------------
Q 004463 243 EMTVGSLSKGIS-------------DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------- 293 (752)
Q Consensus 243 ~l~~~~ls~~y~-------------~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------------- 293 (752)
.+..+||++..+ ...+ ++|+.+.+| ++++|+|||||||||||++| |+...
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~G-el~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPG-VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECC-eEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 367888887652 2234 999999999 99999999999999999999 55421
Q ss_pred -----hhhhceeecCCCC--CCchH------------------------HHHHHHHcCCchhhhcCc-----ccchHHHH
Q 004463 294 -----MSKAGLYLPAKNH--PRLPW------------------------FDLILADIGDHQSLEQNL-----STFSGHIS 337 (752)
Q Consensus 294 -----~aq~G~~vP~~~~--~~l~~------------------------~d~i~~~ig~~~~i~~~~-----stlSgg~k 337 (752)
..+.-.|+|+... ..+++ ++.++..+|+.+..++.+ +.|||||+
T Consensus 946 ~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGer 1025 (1470)
T PLN03140 946 KKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025 (1470)
T ss_pred CChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHH
Confidence 0112246676531 11222 234556667666556654 68999999
Q ss_pred -HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh--HHhhhcccccccC-Cceeec
Q 004463 338 -RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFEN-AATEFS 411 (752)
Q Consensus 338 -rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~--l~~~a~~~~~i~~-g~v~~~ 411 (752)
|+.++++++.+|++|||||||+|||+.....+.. +++.+.+.|.|||+|||+++ +..++|+.+.+.+ |++.+.
T Consensus 1026 kRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~-~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~ 1102 (1470)
T PLN03140 1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYS 1102 (1470)
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEE
Confidence 8999999999999999999999999999999998 55667777899999999986 4678999999986 777654
No 377
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.77 E-value=1.2e-18 Score=205.31 Aligned_cols=152 Identities=20% Similarity=0.236 Sum_probs=121.4
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhhceeecCCCC--CCchH-----
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLYLPAKNH--PRLPW----- 311 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~G~~vP~~~~--~~l~~----- 311 (752)
++|+.+.+| ++++|+|||||||||||++| |....- .+.-.|+|++.. ..+++
T Consensus 43 ~vs~~i~~G-e~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~ 121 (617)
T TIGR00955 43 NVSGVAKPG-ELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLM 121 (617)
T ss_pred CCEEEEeCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHH
Confidence 999999999 99999999999999999999 554320 112247777641 11222
Q ss_pred -------------------HHHHHHHcCCchhhhcCcc------cchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHh
Q 004463 312 -------------------FDLILADIGDHQSLEQNLS------TFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 365 (752)
Q Consensus 312 -------------------~d~i~~~ig~~~~i~~~~s------tlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~ 365 (752)
++.++..+|+.+..+..+. .|||||+ |++++++++.+|++++|||||+|||+..
T Consensus 122 f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~ 201 (617)
T TIGR00955 122 FQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFM 201 (617)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHH
Confidence 3445666777665566554 5999999 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecchh--HHhhhcccccccCCceeecc
Q 004463 366 GVALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFENAATEFSL 412 (752)
Q Consensus 366 ~~~L~~all~~l~~~~~tviitTH~~~--l~~~a~~~~~i~~g~v~~~~ 412 (752)
...+.. +++.+.+.|.|+|++||++. +..++|+...+.+|++.+..
T Consensus 202 ~~~l~~-~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G 249 (617)
T TIGR00955 202 AYSVVQ-VLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLG 249 (617)
T ss_pred HHHHHH-HHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEEC
Confidence 999999 55567777899999999974 67899999999999988763
No 378
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.77 E-value=1.8e-18 Score=221.09 Aligned_cols=168 Identities=15% Similarity=0.128 Sum_probs=127.9
Q ss_pred CeEEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh------hhceeecCCCCC-Cc
Q 004463 242 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------KAGLYLPAKNHP-RL 309 (752)
Q Consensus 242 ~~l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a------q~G~~vP~~~~~-~l 309 (752)
.+++++|++++|++ .++ ++||++++| ++++|+|||||||||||+++ |++.+.. ..-.|+||+... ..
T Consensus 635 ~~i~~~~~~~~~~~~~~~~l~~isl~i~~G-~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~ 713 (1522)
T TIGR00957 635 NSITVHNATFTWARDLPPTLNGITFSIPEG-ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQND 713 (1522)
T ss_pred CcEEEEEeEEEcCCCCCceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCC
Confidence 37899999999974 334 999999999 99999999999999999999 6654321 112477776421 11
Q ss_pred hHHH--------------HHHHHcC-----------CchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCCh
Q 004463 310 PWFD--------------LILADIG-----------DHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 363 (752)
Q Consensus 310 ~~~d--------------~i~~~ig-----------~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~ 363 (752)
++.+ .++...+ +...+.....+|||||+ |+++|+++..+|+++||||||+++|+
T Consensus 714 Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~ 793 (1522)
T TIGR00957 714 SLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 793 (1522)
T ss_pred cHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 1222 2222222 22234567789999999 99999999999999999999999999
Q ss_pred HhHHHHHHHHHHHH-hcCCcEEEEEecchhHHhhhcccccccCCceee
Q 004463 364 SEGVALATSILQYL-RDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 364 ~~~~~L~~all~~l-~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~ 410 (752)
.....+...+.... ..++.|+|++||+.+....||+++.+.+|++..
T Consensus 794 ~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~ 841 (1522)
T TIGR00957 794 HVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISE 841 (1522)
T ss_pred HHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEe
Confidence 99999998776421 124689999999998777799999999998754
No 379
>PLN03232 ABC transporter C family member; Provisional
Probab=99.76 E-value=2e-18 Score=220.43 Aligned_cols=165 Identities=14% Similarity=0.114 Sum_probs=126.9
Q ss_pred CeEEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------------------hhhh
Q 004463 242 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 297 (752)
Q Consensus 242 ~~l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------~aq~ 297 (752)
+.++++||+++|++ .+| ++||++++| +.++|+||+|||||||++++ |++.+ +.+.
T Consensus 1233 g~I~f~nVsf~Y~~~~~~vL~~isl~I~~G-ekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~ 1311 (1495)
T PLN03232 1233 GSIKFEDVHLRYRPGLPPVLHGLSFFVSPS-EKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV 1311 (1495)
T ss_pred CcEEEEEEEEEECCCCCcccccceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhh
Confidence 56899999999953 345 999999999 99999999999999999999 44422 1233
Q ss_pred ceeecCCCCCCc--hH--------------HHHHHHHcCCch-----------hhhcCcccchHHHH-HHHHHHHccCCC
Q 004463 298 GLYLPAKNHPRL--PW--------------FDLILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRE 349 (752)
Q Consensus 298 G~~vP~~~~~~l--~~--------------~d~i~~~ig~~~-----------~i~~~~stlSgg~k-rl~~i~~la~~~ 349 (752)
-.++||++. -+ ++ +.+.+...++.+ .+..+-+.|||||| |++++++++.+|
T Consensus 1312 i~iVpQdp~-LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~ 1390 (1495)
T PLN03232 1312 LSIIPQSPV-LFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRS 1390 (1495)
T ss_pred cEEECCCCe-eeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 357787752 11 11 122333334333 33345578999999 899999999999
Q ss_pred cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 004463 350 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 350 ~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~ 410 (752)
++|||||||+++|+..-..+...+.+. . .++|+|++||.++....||+++.+++|++.-
T Consensus 1391 ~ILILDEATSaLD~~Te~~Iq~~L~~~-~-~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE 1449 (1495)
T PLN03232 1391 KILVLDEATASVDVRTDSLIQRTIREE-F-KSCTMLVIAHRLNTIIDCDKILVLSSGQVLE 1449 (1495)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHH-c-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999888887755543 2 3789999999999777899999999998854
No 380
>PLN03130 ABC transporter C family member; Provisional
Probab=99.76 E-value=2.3e-18 Score=220.37 Aligned_cols=166 Identities=13% Similarity=0.120 Sum_probs=127.5
Q ss_pred CCeEEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------------------hhh
Q 004463 241 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK 296 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------~aq 296 (752)
.+.++++||+++|.+ .+| ++||++++| +.++|+||+|||||||++++ |++.+ +.+
T Consensus 1235 ~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~G-ekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~ 1313 (1622)
T PLN03130 1235 SGSIKFEDVVLRYRPELPPVLHGLSFEISPS-EKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRK 1313 (1622)
T ss_pred CCcEEEEEEEEEeCCCCCceecceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHh
Confidence 357999999999964 245 999999999 99999999999999999999 44322 123
Q ss_pred hceeecCCCCCCc--hH--------------HHHHHHHcCCch-----------hhhcCcccchHHHH-HHHHHHHccCC
Q 004463 297 AGLYLPAKNHPRL--PW--------------FDLILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSR 348 (752)
Q Consensus 297 ~G~~vP~~~~~~l--~~--------------~d~i~~~ig~~~-----------~i~~~~stlSgg~k-rl~~i~~la~~ 348 (752)
.-.++||++. -+ ++ +.+.+...++.+ .+..+-+.|||||+ |+++|++++.+
T Consensus 1314 ~IsiVpQdp~-LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~ 1392 (1622)
T PLN03130 1314 VLGIIPQAPV-LFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRR 1392 (1622)
T ss_pred ccEEECCCCc-cccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcC
Confidence 3357787752 11 11 112233333333 33445578999999 89999999999
Q ss_pred CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 004463 349 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 349 ~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~ 410 (752)
|++|||||||+++|+..-..+..++.+. . .++|+|+++|.++....||+++++++|++.-
T Consensus 1393 p~ILILDEATSaLD~~Te~~Iq~~I~~~-~-~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE 1452 (1622)
T PLN03130 1393 SKILVLDEATAAVDVRTDALIQKTIREE-F-KSCTMLIIAHRLNTIIDCDRILVLDAGRVVE 1452 (1622)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHH-C-CCCEEEEEeCChHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999988887755544 3 3789999999999777899999999998854
No 381
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.76 E-value=7.2e-18 Score=177.74 Aligned_cols=95 Identities=29% Similarity=0.273 Sum_probs=80.8
Q ss_pred HHHcCCch-hhhcCcccchHHHH-HHHHHHHccCC---CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 004463 316 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR---ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 390 (752)
Q Consensus 316 ~~~ig~~~-~i~~~~stlSgg~k-rl~~i~~la~~---~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~ 390 (752)
+..+|+.. .+.+.+++|||||+ |+.++++++.+ |+++||||||+|||+.+...+.. ++..+.+.|.|+|++||+
T Consensus 153 L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~-~L~~l~~~g~tvIiitH~ 231 (261)
T cd03271 153 LCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLE-VLQRLVDKGNTVVVIEHN 231 (261)
T ss_pred HHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCC
Confidence 44667776 57899999999999 89999998885 79999999999999999999998 556677778999999999
Q ss_pred hhHHhhhcccccc------cCCceeec
Q 004463 391 ADLSCLKDKDTRF------ENAATEFS 411 (752)
Q Consensus 391 ~~l~~~a~~~~~i------~~g~v~~~ 411 (752)
+++...|++++.+ .+|++.+.
T Consensus 232 ~~~i~~aD~ii~Lgp~~g~~~G~iv~~ 258 (261)
T cd03271 232 LDVIKCADWIIDLGPEGGDGGGQVVAS 258 (261)
T ss_pred HHHHHhCCEEEEecCCcCCCCCEEEEe
Confidence 9977789998888 56766553
No 382
>PLN03232 ABC transporter C family member; Provisional
Probab=99.76 E-value=4.4e-18 Score=217.32 Aligned_cols=167 Identities=14% Similarity=0.125 Sum_probs=128.1
Q ss_pred CeEEEcccccccCC---eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------hhhceeecCCCCC-
Q 004463 242 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------SKAGLYLPAKNHP- 307 (752)
Q Consensus 242 ~~l~~~~ls~~y~~---~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------aq~G~~vP~~~~~- 307 (752)
+.++++|++++|++ .++ ++||++++| +.++|+||+||||||||+++ |...+. ...-.|+||+...
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~G-e~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf 691 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVG-SLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIF 691 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccc
Confidence 46889999999974 344 999999999 99999999999999999999 555432 1223467776421
Q ss_pred CchH--------------HHHHHHHcCCchh-----------hhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCC
Q 004463 308 RLPW--------------FDLILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 361 (752)
Q Consensus 308 ~l~~--------------~d~i~~~ig~~~~-----------i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~gl 361 (752)
.-++ +++++...++.++ +..+-.+|||||| |+++|+++..+|+++||||||+++
T Consensus 692 ~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaL 771 (1495)
T PLN03232 692 NATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSAL 771 (1495)
T ss_pred cccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence 0011 2233333343333 3344568999999 999999999999999999999999
Q ss_pred ChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 004463 362 DPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 362 D~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~ 410 (752)
|+.....+...++..+. .+.|+|++||.......||+++.+.+|++..
T Consensus 772 D~~t~~~I~~~~l~~~l-~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~ 819 (1495)
T PLN03232 772 DAHVAHQVFDSCMKDEL-KGKTRVLVTNQLHFLPLMDRIILVSEGMIKE 819 (1495)
T ss_pred CHHHHHHHHHHHhhhhh-cCCEEEEEECChhhHHhCCEEEEEeCCEEEE
Confidence 99999988776665433 4689999999998878899999999988753
No 383
>PLN03130 ABC transporter C family member; Provisional
Probab=99.76 E-value=3e-18 Score=219.21 Aligned_cols=167 Identities=15% Similarity=0.146 Sum_probs=129.2
Q ss_pred CeEEEcccccccCC---eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh-------hhceeecCCCCC-
Q 004463 242 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------KAGLYLPAKNHP- 307 (752)
Q Consensus 242 ~~l~~~~ls~~y~~---~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a-------q~G~~vP~~~~~- 307 (752)
+.++++|++++|++ .++ ++||++++| +.++|+||+||||||||++| |...+.. ..-.|+||+...
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~G-e~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~Lf 691 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVG-SLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIF 691 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCC-CEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccC
Confidence 46899999999974 344 999999999 99999999999999999999 6665543 123477776521
Q ss_pred CchH--------------HHHHHHHcCCch-----------hhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCC
Q 004463 308 RLPW--------------FDLILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 361 (752)
Q Consensus 308 ~l~~--------------~d~i~~~ig~~~-----------~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~gl 361 (752)
.-++ +++++...++.+ .+..+-.+|||||| |+++|+++..+|+++||||||+++
T Consensus 692 ngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSAL 771 (1622)
T PLN03130 692 NATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSAL 771 (1622)
T ss_pred CCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCcccc
Confidence 0111 233333334333 33345568999999 999999999999999999999999
Q ss_pred ChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 004463 362 DPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 362 D~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~ 410 (752)
|+..+..+...++..+. ++.|+|++||.......||+++.+.+|++..
T Consensus 772 D~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e 819 (1622)
T PLN03130 772 DAHVGRQVFDKCIKDEL-RGKTRVLVTNQLHFLSQVDRIILVHEGMIKE 819 (1622)
T ss_pred CHHHHHHHHHHHhhHHh-cCCEEEEEECCHhHHHhCCEEEEEeCCEEEE
Confidence 99999888765555443 4789999999999888899999999998753
No 384
>PTZ00243 ABC transporter; Provisional
Probab=99.75 E-value=4.3e-18 Score=217.46 Aligned_cols=166 Identities=13% Similarity=0.165 Sum_probs=127.9
Q ss_pred CCeEEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------------------hhh
Q 004463 241 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK 296 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------~aq 296 (752)
.+.|+++||+++|++ .+| ++||++.+| +.++|+|++|||||||++++ |++.+ +.+
T Consensus 1306 ~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~G-ekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~ 1384 (1560)
T PTZ00243 1306 AGSLVFEGVQMRYREGLPLVLRGVSFRIAPR-EKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRR 1384 (1560)
T ss_pred CCeEEEEEEEEEeCCCCCceeecceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHh
Confidence 357999999999964 334 999999999 99999999999999999999 44432 223
Q ss_pred hceeecCCCCCCc--hH--------------HHHHHHHcCCchhh-----------hcCcccchHHHH-HHHHHHHccCC
Q 004463 297 AGLYLPAKNHPRL--PW--------------FDLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSR 348 (752)
Q Consensus 297 ~G~~vP~~~~~~l--~~--------------~d~i~~~ig~~~~i-----------~~~~stlSgg~k-rl~~i~~la~~ 348 (752)
.-.++||+.. -+ ++ +...+...|+.+.+ ..+-+.|||||| |++++++++.+
T Consensus 1385 ~I~iVpQdp~-LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~ 1463 (1560)
T PTZ00243 1385 QFSMIPQDPV-LFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK 1463 (1560)
T ss_pred cceEECCCCc-cccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC
Confidence 3457888752 11 11 12234444444332 334478999999 89999999985
Q ss_pred -CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 004463 349 -ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 349 -~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~ 410 (752)
|++|||||||+++|+..-..+...+.+.+ .++|+|+++|.++....||+++.+.+|++.-
T Consensus 1464 ~~~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE 1524 (1560)
T PTZ00243 1464 GSGFILMDEATANIDPALDRQIQATVMSAF--SAYTVITIAHRLHTVAQYDKIIVMDHGAVAE 1524 (1560)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHC--CCCEEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 89999999999999999888887555433 3689999999999888899999999998754
No 385
>PTZ00243 ABC transporter; Provisional
Probab=99.75 E-value=4.5e-18 Score=217.23 Aligned_cols=158 Identities=17% Similarity=0.204 Sum_probs=119.8
Q ss_pred ccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------hhhceeecCCCCC-CchHHHHH------
Q 004463 252 GISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------SKAGLYLPAKNHP-RLPWFDLI------ 315 (752)
Q Consensus 252 ~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------aq~G~~vP~~~~~-~l~~~d~i------ 315 (752)
.++++++ ++||++++| ++++|+|||||||||||++| |++.+. .+...|+|+.... ..++.+++
T Consensus 669 ~~~~~~iL~~isl~i~~G-~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~ 747 (1560)
T PTZ00243 669 ELEPKVLLRDVSVSVPRG-KLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEE 747 (1560)
T ss_pred ccCCceeEeeeEEEECCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChh
Confidence 3344445 999999999 99999999999999999999 665432 1223477776421 11222222
Q ss_pred -----------------HHHc--CCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHH
Q 004463 316 -----------------LADI--GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ 375 (752)
Q Consensus 316 -----------------~~~i--g~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~ 375 (752)
+..+ |+...+.....+|||||+ |++++++++.+|+++||||||++||+..+..+...++.
T Consensus 748 ~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~ 827 (1560)
T PTZ00243 748 DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFL 827 (1560)
T ss_pred hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 1122 445556778899999999 89999999999999999999999999998888765543
Q ss_pred HHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 376 YLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 376 ~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
... .|.|+|++||+.++...||+++.+.+|.+.+.
T Consensus 828 ~~~-~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~ 862 (1560)
T PTZ00243 828 GAL-AGKTRVLATHQVHVVPRADYVVALGDGRVEFS 862 (1560)
T ss_pred Hhh-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEe
Confidence 333 47899999999997788999999999987543
No 386
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.75 E-value=5.3e-18 Score=216.26 Aligned_cols=165 Identities=17% Similarity=0.104 Sum_probs=121.4
Q ss_pred eEEEcccccccCCeeE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh------hhceeecCCCCC-CchHHH
Q 004463 243 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------KAGLYLPAKNHP-RLPWFD 313 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a------q~G~~vP~~~~~-~l~~~d 313 (752)
.+.++++++.+. ..+ ++||++++| ++++|+|||||||||||++| |++.+.. ....|+|+.... ..++.+
T Consensus 428 ~~~~~~~s~~~~-~~l~~i~l~i~~G-~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~e 505 (1490)
T TIGR01271 428 GLFFSNFSLYVT-PVLKNISFKLEKG-QLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKD 505 (1490)
T ss_pred cccccccccccC-cceeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHH
Confidence 345566665432 123 999999999 99999999999999999999 6654421 112466766421 112333
Q ss_pred HH--------------HHHcCCch-----------hhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHH
Q 004463 314 LI--------------LADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV 367 (752)
Q Consensus 314 ~i--------------~~~ig~~~-----------~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~ 367 (752)
+| +...++.+ .+.....+|||||+ |++++++++.+|+++|||||++++|+..+.
T Consensus 506 NI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~ 585 (1490)
T TIGR01271 506 NIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEK 585 (1490)
T ss_pred HHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 32 22122222 23455689999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 004463 368 ALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 368 ~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~ 410 (752)
.+...++..+.+ +.|+|++||+++....||+++.+.+|.+..
T Consensus 586 ~i~~~~l~~~~~-~~tvilvtH~~~~~~~ad~ii~l~~g~i~~ 627 (1490)
T TIGR01271 586 EIFESCLCKLMS-NKTRILVTSKLEHLKKADKILLLHEGVCYF 627 (1490)
T ss_pred HHHHHHHHHHhc-CCeEEEEeCChHHHHhCCEEEEEECCEEEE
Confidence 999765554443 789999999998767799999999988754
No 387
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.74 E-value=1.1e-17 Score=213.48 Aligned_cols=166 Identities=17% Similarity=0.182 Sum_probs=128.7
Q ss_pred CCeEEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh------------------hhhh
Q 004463 241 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKA 297 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------------------~aq~ 297 (752)
.+.++++||+++|++ .++ ++||++++| +.++|+|++|||||||++++ |+... +.+.
T Consensus 1215 ~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~G-ekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~ 1293 (1490)
T TIGR01271 1215 GGQMDVQGLTAKYTEAGRAVLQDLSFSVEGG-QRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKA 1293 (1490)
T ss_pred CCeEEEEEEEEEeCCCCcceeeccEEEEcCC-CEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhc
Confidence 357999999999964 445 999999999 99999999999999999999 66431 1233
Q ss_pred ceeecCCCCCCch--H--------------HHHHHHHcCCchhh-----------hcCcccchHHHH-HHHHHHHccCCC
Q 004463 298 GLYLPAKNHPRLP--W--------------FDLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRE 349 (752)
Q Consensus 298 G~~vP~~~~~~l~--~--------------~d~i~~~ig~~~~i-----------~~~~stlSgg~k-rl~~i~~la~~~ 349 (752)
-.++||++. -++ + +..++...++.+.+ ...-..|||||+ |++++++++.+|
T Consensus 1294 is~IpQdp~-LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~ 1372 (1490)
T TIGR01271 1294 FGVIPQKVF-IFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKA 1372 (1490)
T ss_pred eEEEeCCCc-cCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCC
Confidence 457888762 111 1 12334445544333 233457999999 899999999999
Q ss_pred cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 004463 350 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 350 ~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~ 410 (752)
++|||||||+++|+..-..+...|.+.+ .++|+|++||.++....+|+++.+.+|++.-
T Consensus 1373 ~ILlLDEaTS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE 1431 (1490)
T TIGR01271 1373 KILLLDEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRVEALLECQQFLVIEGSSVKQ 1431 (1490)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999888877555432 3689999999999777899999999999854
No 388
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.74 E-value=7e-18 Score=215.74 Aligned_cols=166 Identities=10% Similarity=0.051 Sum_probs=127.1
Q ss_pred CCeEEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------------------hhh
Q 004463 241 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK 296 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------~aq 296 (752)
.+.++++||+++|++ .+| ++||++++| +.++|+||+|||||||++++ |++.+ +.+
T Consensus 1282 ~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~G-ekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~ 1360 (1522)
T TIGR00957 1282 RGRVEFRNYCLRYREDLDLVLRHINVTIHGG-EKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRF 1360 (1522)
T ss_pred CCcEEEEEEEEEeCCCCcccccceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHh
Confidence 357899999999964 345 999999999 99999999999999999999 44422 123
Q ss_pred hceeecCCCCCCc--hH--------------HHHHHHHcCCch-----------hhhcCcccchHHHH-HHHHHHHccCC
Q 004463 297 AGLYLPAKNHPRL--PW--------------FDLILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSR 348 (752)
Q Consensus 297 ~G~~vP~~~~~~l--~~--------------~d~i~~~ig~~~-----------~i~~~~stlSgg~k-rl~~i~~la~~ 348 (752)
.-.++||++. -+ ++ +...+...++.+ .+..+-+.|||||+ |++++++++.+
T Consensus 1361 ~i~iVpQdp~-LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1439 (1522)
T TIGR00957 1361 KITIIPQDPV-LFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRK 1439 (1522)
T ss_pred cCeEECCCCc-ccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcC
Confidence 3457788752 11 01 112233333332 23344578999999 89999999999
Q ss_pred CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 004463 349 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 349 ~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~ 410 (752)
|++|||||||+++|+..-..+..++.+.+ .++|+|+++|..+....+|+++++++|++.-
T Consensus 1440 ~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE 1499 (1522)
T TIGR00957 1440 TKILVLDEATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHRLNTIMDYTRVIVLDKGEVAE 1499 (1522)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999998877777554432 3689999999999888899999999999854
No 389
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.74 E-value=9.9e-18 Score=179.06 Aligned_cols=159 Identities=19% Similarity=0.291 Sum_probs=131.0
Q ss_pred eEEEcccccccCCe--eE-eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCch---------
Q 004463 243 EMTVGSLSKGISDF--PV-PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP--------- 310 (752)
Q Consensus 243 ~l~~~~ls~~y~~~--~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~--------- 310 (752)
.++++|+.+.|.+. .| |||+++.+| +++.|+|.||||||||++.+ .|+|.|++|...+.
T Consensus 322 ~lelrnvrfay~~~~FhvgPiNl~ikrG-elvFliG~NGsGKST~~~LL--------tGL~~PqsG~I~ldg~pV~~e~l 392 (546)
T COG4615 322 TLELRNVRFAYQDNAFHVGPINLTIKRG-ELVFLIGGNGSGKSTLAMLL--------TGLYQPQSGEILLDGKPVSAEQL 392 (546)
T ss_pred ceeeeeeeeccCcccceecceeeEEecC-cEEEEECCCCCcHHHHHHHH--------hcccCCCCCceeECCccCCCCCH
Confidence 47899999999764 35 999999999 99999999999999999999 99999998843221
Q ss_pred -----HHHHHHHHcC-------Cch-----h----------------hhcCc--ccchHHHH-HHHHHHHccCCCcEEEE
Q 004463 311 -----WFDLILADIG-------DHQ-----S----------------LEQNL--STFSGHIS-RIVDILELVSRESLVLI 354 (752)
Q Consensus 311 -----~~d~i~~~ig-------~~~-----~----------------i~~~~--stlSgg~k-rl~~i~~la~~~~LlLL 354 (752)
.|..+|++.. .++ . -+... -.||-|+| |++++.+++.+++++++
T Consensus 393 edYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~ 472 (546)
T COG4615 393 EDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVL 472 (546)
T ss_pred HHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEe
Confidence 2334444332 111 0 11222 35788998 99999999999999999
Q ss_pred eCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 004463 355 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 355 DEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~ 410 (752)
||=.+.-||.-+..+..-++-.+++.|.||+++|||-.-...||+...+.||.+.-
T Consensus 473 DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e 528 (546)
T COG4615 473 DEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528 (546)
T ss_pred ehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceee
Confidence 99999999999999999999999999999999999977677899999999998754
No 390
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.73 E-value=2.2e-17 Score=172.25 Aligned_cols=77 Identities=25% Similarity=0.232 Sum_probs=64.9
Q ss_pred hhcCcccchHHHH-HHHHHHHcc----CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcc
Q 004463 325 LEQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDK 399 (752)
Q Consensus 325 i~~~~stlSgg~k-rl~~i~~la----~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~ 399 (752)
.+..+.+||+||+ |++++++++ .+|+++||||||+|+||.....+...+ ..+.+ +.++|++||..++..+|++
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l-~~~~~-~~~ii~~~h~~~~~~~~d~ 229 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMI-KELSD-GAQFITTTFRPELLEVADK 229 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHH-HHHhC-CCEEEEEecCHHHHhhCCE
Confidence 3578899999999 899998885 468999999999999999999998844 44555 6789999999888889998
Q ss_pred cccc
Q 004463 400 DTRF 403 (752)
Q Consensus 400 ~~~i 403 (752)
++.+
T Consensus 230 i~~l 233 (243)
T cd03272 230 FYGV 233 (243)
T ss_pred EEEE
Confidence 8764
No 391
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.73 E-value=3.1e-17 Score=175.92 Aligned_cols=165 Identities=17% Similarity=0.202 Sum_probs=127.9
Q ss_pred eEEEcccccccC----Cee-E-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh--------------------
Q 004463 243 EMTVGSLSKGIS----DFP-V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------------------- 295 (752)
Q Consensus 243 ~l~~~~ls~~y~----~~~-v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a-------------------- 295 (752)
.+.++||+..|. ... | ++||.+.+| +.++|+|.+|||||++...| +|++.-+
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~G-EtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAG-ETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCC-CEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 467889998885 222 3 999999999 99999999999999999888 7764310
Q ss_pred ---------hhceeecCCCCCCchHH--------------------------HHHHHHcCCc---hhhhcCcccchHHHH
Q 004463 296 ---------KAGLYLPAKNHPRLPWF--------------------------DLILADIGDH---QSLEQNLSTFSGHIS 337 (752)
Q Consensus 296 ---------q~G~~vP~~~~~~l~~~--------------------------d~i~~~ig~~---~~i~~~~stlSgg~k 337 (752)
++ ..+.+++-..+..+ -.++..+|+. ..++..+..||||++
T Consensus 85 ~~lr~iRG~~I-~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqR 163 (534)
T COG4172 85 RQLRGVRGNKI-GMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQR 163 (534)
T ss_pred HHHhhhcccce-EEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchh
Confidence 11 23444432223221 1235555654 457889999999999
Q ss_pred -HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHH-hcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 004463 338 -RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL-RDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 410 (752)
Q Consensus 338 -rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l-~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~ 410 (752)
|+.++++++++|+|||-||||..||..-.+.|.. +++.| .+.|..++++|||+. +..+||++.+|..|.++-
T Consensus 164 QRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~-Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE 238 (534)
T COG4172 164 QRVMIAMALANEPDLLIADEPTTALDVTVQAQILD-LLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE 238 (534)
T ss_pred hHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHH-HHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEee
Confidence 8999999999999999999999999999999999 55555 456899999999999 556999999999988754
No 392
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.72 E-value=4.8e-17 Score=174.52 Aligned_cols=169 Identities=17% Similarity=0.121 Sum_probs=128.6
Q ss_pred CCeEEEcccccccCC------------eeE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh------h------
Q 004463 241 NSEMTVGSLSKGISD------------FPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------M------ 294 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~------------~~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------~------ 294 (752)
...++.++|...|.- +.| ++||++.+| +.++|+|.+|||||||=.++ +|+.- .
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~g-qTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRG-QTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCC-CeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccc
Confidence 345778888877731 123 899999999 99999999999999998877 44421 1
Q ss_pred ---------hhhceeecCCCCCCc----hH-----------------------HHHHHHHcCCc-hhhhcCcccchHHHH
Q 004463 295 ---------SKAGLYLPAKNHPRL----PW-----------------------FDLILADIGDH-QSLEQNLSTFSGHIS 337 (752)
Q Consensus 295 ---------aq~G~~vP~~~~~~l----~~-----------------------~d~i~~~ig~~-~~i~~~~stlSgg~k 337 (752)
.+--..|.++++..+ ++ +-..+..+|++ ...++.+..||||++
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQR 432 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQR 432 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchh
Confidence 111123444443222 21 11235556654 567899999999999
Q ss_pred -HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 338 -RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 338 -rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
|++++++++.+|.+++||||||.||..-...+.. +++.|.+ .+.+-+|+|||+. +..+|++++++.+|+++-.
T Consensus 433 QRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~-LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~ 508 (534)
T COG4172 433 QRIAIARALILKPELILLDEPTSALDRSVQAQVLD-LLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQ 508 (534)
T ss_pred hHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHH-HHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeee
Confidence 9999999999999999999999999999999988 6666654 5778999999998 5669999999999998654
No 393
>PRK04946 hypothetical protein; Provisional
Probab=99.72 E-value=8e-18 Score=166.59 Aligned_cols=75 Identities=25% Similarity=0.339 Sum_probs=70.1
Q ss_pred CCceeeccccHHHHHHHHHHHHHcc--CCCCcEEEEecccchHHHHHHHHHhhcCCCcccccCCCCCCC--ceEEEEEC
Q 004463 678 KNSLDLRGMRVEEASHQLDIALACW--ESRSVLFVIHGMGTGVVKERVLEILRNHPRVAKYEQESPMNY--GCTVAYIK 752 (752)
Q Consensus 678 ~~~ldlrG~r~eeA~~~vd~~ld~~--~~~~~v~IiHG~GtG~Lr~~v~~~L~~~p~V~~~~~~~~~~~--G~tvv~~~ 752 (752)
..+|||+|||+|||..+|+.||+++ .|+..|.||||+|+|+||+.|+.||++||+|..|+.|+|.+| |+|+|.|+
T Consensus 95 ~~~LDLhG~~~eeA~~~L~~fl~~a~~~g~r~v~IIHGkG~gvLk~~V~~wL~q~~~V~af~~A~~~~GG~GA~~VlLk 173 (181)
T PRK04946 95 ELFLDLHGLTQLQAKQELGALIAACRKEHVFCACVMHGHGKHILKQQTPLWLAQHPDVMAFHQAPKEWGGDAALLVLIE 173 (181)
T ss_pred ceEEECCCCCHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCHhHHHHHHHHHHcCCchhheeeccCcccCCceEEEEEEe
Confidence 3579999999999999999999997 799999999999999999999999999999999999999875 68888874
No 394
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.71 E-value=1.4e-17 Score=170.94 Aligned_cols=149 Identities=17% Similarity=0.171 Sum_probs=100.8
Q ss_pred EEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhh------hhh-hhhceeecCCCCC--Cch---
Q 004463 245 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLA------SLM-SKAGLYLPAKNHP--RLP--- 310 (752)
Q Consensus 245 ~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli------~~~-aq~G~~vP~~~~~--~l~--- 310 (752)
+++|.- +|++..+ ++++ ++++|+||||+||||+|++|..+ .+. .+.| ++|..+.. .+.
T Consensus 7 ~l~nfk-~~~~~~~l~~~~~------~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~-~~~~~~~~~~~~~~~~ 78 (212)
T cd03274 7 VLENFK-SYAGEQVIGPFHK------SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLS-DLIHNSAGHPNLDSCS 78 (212)
T ss_pred EEECcc-cCCCCeeeccCCC------CeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHH-HHhcCCCCCCCCceEE
Confidence 344443 5555444 4544 58999999999999999998422 011 1122 22222100 000
Q ss_pred ---HH-------------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHcc----CCCcEEEEeCC
Q 004463 311 ---WF-------------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV----SRESLVLIDEI 357 (752)
Q Consensus 311 ---~~-------------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la----~~~~LlLLDEp 357 (752)
+| ..+...+++.+..++.++.||+||+ |+.++++++ .+|++++||||
T Consensus 79 ~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEP 158 (212)
T cd03274 79 VEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEI 158 (212)
T ss_pred EEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCC
Confidence 01 1122334455556778899999999 788888775 36899999999
Q ss_pred CCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccc
Q 004463 358 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF 403 (752)
Q Consensus 358 ~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i 403 (752)
|+|+||.....+.. ++..+.+ +.++|++||+.++..+||+++.+
T Consensus 159 t~gLD~~~~~~l~~-~l~~~~~-~~~~iivs~~~~~~~~~d~v~~~ 202 (212)
T cd03274 159 DAALDFRNVSIVAN-YIKERTK-NAQFIVISLRNNMFELADRLVGI 202 (212)
T ss_pred CcCCCHHHHHHHHH-HHHHHcC-CCEEEEEECcHHHHHhCCEEEEE
Confidence 99999999999988 4455554 67899999998888899988765
No 395
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.71 E-value=2.1e-17 Score=168.59 Aligned_cols=142 Identities=19% Similarity=0.131 Sum_probs=97.7
Q ss_pred eeEEEccCceEEEEEcCCCCCHHHHHHHHH-----hhhhhh-----------------hhceeecCCC-CC------Cch
Q 004463 260 IDIKVECETRVVVITGPNTGGKTASMKTLG-----LASLMS-----------------KAGLYLPAKN-HP------RLP 310 (752)
Q Consensus 260 idl~l~~g~~~~~I~GpNGsGKSTlLK~iG-----li~~~a-----------------q~G~~vP~~~-~~------~l~ 310 (752)
.++++.+| +++|+||||+||||||++|. ....-. ..+ ++++.. .. .+.
T Consensus 16 ~~l~~~~g--~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~-~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 16 SEIEFFSP--LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVK-LAFENANGKKYTITRSLA 92 (204)
T ss_pred eEEecCCC--eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEE-EEEEeCCCCEEEEEEEhh
Confidence 45666666 99999999999999999982 221100 001 111111 00 113
Q ss_pred HHHHHHHH--cCCchhhhcCcccchHHHHH-------HHHHHHccCCCcEEEEeCCCCCCChHhHH-HHHHHHHHHHhcC
Q 004463 311 WFDLILAD--IGDHQSLEQNLSTFSGHISR-------IVDILELVSRESLVLIDEIGSGTDPSEGV-ALATSILQYLRDR 380 (752)
Q Consensus 311 ~~d~i~~~--ig~~~~i~~~~stlSgg~kr-------l~~i~~la~~~~LlLLDEp~~glD~~~~~-~L~~all~~l~~~ 380 (752)
+++++... -.....+++.+++||+|+++ ++++++++.+|+++|||||+++||+.... .+.. ++..+.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~-~l~~~~~~ 171 (204)
T cd03240 93 ILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAE-IIEERKSQ 171 (204)
T ss_pred HhhceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHH-HHHHHHhc
Confidence 34443110 01123457789999999995 45667889999999999999999999999 8888 55556554
Q ss_pred -CcEEEEEecchhHHhhhcccccccC
Q 004463 381 -VGLAVVTTHYADLSCLKDKDTRFEN 405 (752)
Q Consensus 381 -~~tviitTH~~~l~~~a~~~~~i~~ 405 (752)
+.++|++||++++...|++++.+..
T Consensus 172 ~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 172 KNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred cCCEEEEEEecHHHHhhCCEEEEEee
Confidence 7899999999987778887776643
No 396
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.71 E-value=9.2e-18 Score=162.12 Aligned_cols=152 Identities=18% Similarity=0.245 Sum_probs=114.3
Q ss_pred EeeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh------------------hhhhceeecCCC--CCCchH-----
Q 004463 258 VPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAGLYLPAKN--HPRLPW----- 311 (752)
Q Consensus 258 v~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------------------~aq~G~~vP~~~--~~~l~~----- 311 (752)
.|++..+..| +++-++|||||||||||-.+ |++.. +|+.-.|..+.. ...+++
T Consensus 16 ~plS~qv~aG-e~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~ 94 (248)
T COG4138 16 GPLSGEVRAG-EILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLT 94 (248)
T ss_pred cccccccccc-eEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhh
Confidence 3899999999 99999999999999999888 55532 122112222111 112232
Q ss_pred -----------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHcc-------CCCcEEEEeCCCCCCChHhHHHHHHH
Q 004463 312 -----------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV-------SRESLVLIDEIGSGTDPSEGVALATS 372 (752)
Q Consensus 312 -----------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la-------~~~~LlLLDEp~~glD~~~~~~L~~a 372 (752)
++.|...++++|.+.+.++.||||+- |+.++.... -...|+|+|||.++||.....+|-.
T Consensus 95 L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdr- 173 (248)
T COG4138 95 LHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDR- 173 (248)
T ss_pred hcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHH-
Confidence 45667778899999999999999997 666653211 1336999999999999988887766
Q ss_pred HHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 373 ILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 373 ll~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
++..++..|.+|||++||.+ ..+.+++.+.+..|.+...
T Consensus 174 ll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~ 213 (248)
T COG4138 174 LLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLAS 213 (248)
T ss_pred HHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEee
Confidence 88889999999999999987 5668888888888876543
No 397
>PLN03140 ABC transporter G family member; Provisional
Probab=99.71 E-value=2.1e-17 Score=209.08 Aligned_cols=151 Identities=18% Similarity=0.220 Sum_probs=117.1
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhhceeecCCC--CCCchHH----
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLYLPAKN--HPRLPWF---- 312 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~G~~vP~~~--~~~l~~~---- 312 (752)
++|+.+.+| ++++|+||||||||||||++ |++..- .+.-.|+|+.. ...+++.
T Consensus 183 ~vs~~i~~G-e~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~ 261 (1470)
T PLN03140 183 DASGIIKPS-RMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLD 261 (1470)
T ss_pred CCeEEEeCC-eEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHH
Confidence 999999999 99999999999999999999 665321 01124566552 1112221
Q ss_pred ---------------------------------------------------HHHHHHcCCchhh-----hcCcccchHHH
Q 004463 313 ---------------------------------------------------DLILADIGDHQSL-----EQNLSTFSGHI 336 (752)
Q Consensus 313 ---------------------------------------------------d~i~~~ig~~~~i-----~~~~stlSgg~ 336 (752)
+.++..+|+.+.. +..+..+||||
T Consensus 262 f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGe 341 (1470)
T PLN03140 262 FSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQ 341 (1470)
T ss_pred HHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCccc
Confidence 2344556665432 44668999999
Q ss_pred H-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecch--hHHhhhcccccccCCceeec
Q 004463 337 S-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYA--DLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 337 k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~--~l~~~a~~~~~i~~g~v~~~ 411 (752)
| |+.++.+++.+|++++|||||+|||+.....+.. +++.+.+ .|.|+|++||+. ++..++|+++.+.+|++.+.
T Consensus 342 rkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~-~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~ 419 (1470)
T PLN03140 342 KKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVK-CLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQ 419 (1470)
T ss_pred ceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHH-HHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEe
Confidence 9 8999999999999999999999999999999998 4455554 588999999985 57789999999999998775
No 398
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.70 E-value=7.6e-17 Score=156.79 Aligned_cols=167 Identities=19% Similarity=0.158 Sum_probs=126.6
Q ss_pred EEEcccccccCC----------eeE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------
Q 004463 244 MTVGSLSKGISD----------FPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------- 294 (752)
Q Consensus 244 l~~~~ls~~y~~----------~~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~----------------- 294 (752)
++++|++|.|.. ..| +++|++..| ..++|+|.||||||||.|++ |.+.+.
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~-QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~ 83 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREG-QTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYS 83 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCC-cEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchH
Confidence 457788887732 123 999999999 89999999999999999999 444321
Q ss_pred --hhhceeecCCCCCCchH-----------------------HHHH---HHHcCC-chhhhcCcccchHHHH-HHHHHHH
Q 004463 295 --SKAGLYLPAKNHPRLPW-----------------------FDLI---LADIGD-HQSLEQNLSTFSGHIS-RIVDILE 344 (752)
Q Consensus 295 --aq~G~~vP~~~~~~l~~-----------------------~d~i---~~~ig~-~~~i~~~~stlSgg~k-rl~~i~~ 344 (752)
++..-.+.++++..+.. -.+| +..+|+ .+..+-++..||.|++ |++++++
T Consensus 84 ~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARA 163 (267)
T COG4167 84 FRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARA 163 (267)
T ss_pred hhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHH
Confidence 11111222222111111 1122 333453 4566778899999999 9999999
Q ss_pred ccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 345 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 345 la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+.-+|+++|.||..++||...+..|.+.+++.-.+.|...|++|.++. ++.++|.++++..|.|+-.
T Consensus 164 LIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~ 231 (267)
T COG4167 164 LILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVER 231 (267)
T ss_pred HhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeec
Confidence 999999999999999999999999999888866667889999999887 7789999999999998765
No 399
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.70 E-value=4.2e-17 Score=206.62 Aligned_cols=151 Identities=17% Similarity=0.167 Sum_probs=117.2
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhh-----h----------h---h----hhceeecCCCC--CCchH--
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-----L----------M---S----KAGLYLPAKNH--PRLPW-- 311 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~-----~----------~---a----q~G~~vP~~~~--~~l~~-- 311 (752)
++|+.+.+| ++++|+||||||||||||+| |+.. . + . +...|+|+... ..+++
T Consensus 79 ~vs~~i~~G-e~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E 157 (1394)
T TIGR00956 79 PMDGLIKPG-ELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGE 157 (1394)
T ss_pred CCEEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHH
Confidence 899999999 99999999999999999999 6531 1 0 0 11246666531 11111
Q ss_pred ---------------------------HHHHHHHcCCchhhhcC-----cccchHHHH-HHHHHHHccCCCcEEEEeCCC
Q 004463 312 ---------------------------FDLILADIGDHQSLEQN-----LSTFSGHIS-RIVDILELVSRESLVLIDEIG 358 (752)
Q Consensus 312 ---------------------------~d~i~~~ig~~~~i~~~-----~stlSgg~k-rl~~i~~la~~~~LlLLDEp~ 358 (752)
.+.++..+|+.+..++. +..|||||+ |++++++++.+|++++|||||
T Consensus 158 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPT 237 (1394)
T TIGR00956 158 TLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNAT 237 (1394)
T ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCC
Confidence 12345566776555443 567999999 899999999999999999999
Q ss_pred CCCChHhHHHHHHHHHHHHhc-CCcEEEEEecch--hHHhhhcccccccCCceeec
Q 004463 359 SGTDPSEGVALATSILQYLRD-RVGLAVVTTHYA--DLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 359 ~glD~~~~~~L~~all~~l~~-~~~tviitTH~~--~l~~~a~~~~~i~~g~v~~~ 411 (752)
+|||+.....+.. +++.+.+ .|.|+|++||+. ++..++|+++.+.+|++.+.
T Consensus 238 sgLD~~~~~~i~~-~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~ 292 (1394)
T TIGR00956 238 RGLDSATALEFIR-ALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYF 292 (1394)
T ss_pred CCcCHHHHHHHHH-HHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEE
Confidence 9999999999998 5566665 588999999995 37789999999999998765
No 400
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.69 E-value=1.4e-16 Score=167.04 Aligned_cols=77 Identities=12% Similarity=0.079 Sum_probs=64.8
Q ss_pred cCcccchHHHH-HHHHHHHccC----CCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccc
Q 004463 327 QNLSTFSGHIS-RIVDILELVS----RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDT 401 (752)
Q Consensus 327 ~~~stlSgg~k-rl~~i~~la~----~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~ 401 (752)
+.+..||+|++ +++++++++. +|+++||||||+|+|+.....+.. ++..+.+.|.++|++||+.++..+||+++
T Consensus 151 ~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~-~i~~~~~~g~~vi~isH~~~~~~~~d~i~ 229 (247)
T cd03275 151 RDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVAS-YIREQAGPNFQFIVISLKEEFFSKADALV 229 (247)
T ss_pred hhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHH-HHHHhccCCcEEEEEECCHHHHhhCCeEE
Confidence 34589999999 7888888765 489999999999999999999988 55556666889999999988888899886
Q ss_pred ccc
Q 004463 402 RFE 404 (752)
Q Consensus 402 ~i~ 404 (752)
.+.
T Consensus 230 ~~~ 232 (247)
T cd03275 230 GVY 232 (247)
T ss_pred EEE
Confidence 653
No 401
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.69 E-value=1.9e-16 Score=166.54 Aligned_cols=79 Identities=15% Similarity=0.107 Sum_probs=66.2
Q ss_pred hhhhcCcccchHHHH-HHHHHHHcc----CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhh
Q 004463 323 QSLEQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLK 397 (752)
Q Consensus 323 ~~i~~~~stlSgg~k-rl~~i~~la----~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a 397 (752)
+..+..+.+||+|++ |++++++++ .+|+++||||||+|+|+.....+...+ ..+.+ |.++|++||+.++...|
T Consensus 158 ~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l-~~~~~-g~~ii~iSH~~~~~~~~ 235 (251)
T cd03273 158 GVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMI-KTHFK-GSQFIVVSLKEGMFNNA 235 (251)
T ss_pred HhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHH-HHHcC-CCEEEEEECCHHHHHhC
Confidence 445678899999999 788888776 678999999999999999999998844 44543 78999999998888889
Q ss_pred cccccc
Q 004463 398 DKDTRF 403 (752)
Q Consensus 398 ~~~~~i 403 (752)
|+++.+
T Consensus 236 d~v~~~ 241 (251)
T cd03273 236 NVLFRT 241 (251)
T ss_pred CEEEEE
Confidence 988654
No 402
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.69 E-value=8e-17 Score=175.39 Aligned_cols=169 Identities=19% Similarity=0.252 Sum_probs=125.3
Q ss_pred ccCCCeEEEcccccccC-CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH--------Hhhhh-------------
Q 004463 238 DVENSEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL--------GLASL------------- 293 (752)
Q Consensus 238 ~~g~~~l~~~~ls~~y~-~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i--------Gli~~------------- 293 (752)
...+|.++++||+|.|+ +++| +++|++.+| +.++|+||+|+||||+||++ |-+.+
T Consensus 532 ~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pG-ktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SL 610 (790)
T KOG0056|consen 532 KVTQGKIEFSNVTFAYDPGKPVLSDISFTVQPG-KTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSL 610 (790)
T ss_pred cccCCeEEEEEeEEecCCCCceeecceEEecCC-cEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHH
Confidence 34567899999999995 4666 999999999 99999999999999999998 33322
Q ss_pred hhhhceeecCCCCCCch--HH------------HHH---------HHHc-CC----chhhhcCcccchHHHH-HHHHHHH
Q 004463 294 MSKAGLYLPAKNHPRLP--WF------------DLI---------LADI-GD----HQSLEQNLSTFSGHIS-RIVDILE 344 (752)
Q Consensus 294 ~aq~G~~vP~~~~~~l~--~~------------d~i---------~~~i-g~----~~~i~~~~stlSgg~k-rl~~i~~ 344 (752)
..++| .||++. .-+. ++ +.+ ..++ +. ...+-..--.||||+| |+++++.
T Consensus 611 Rs~IG-VVPQDt-vLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARt 688 (790)
T KOG0056|consen 611 RSSIG-VVPQDT-VLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIART 688 (790)
T ss_pred HHhcC-cccCcc-eeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHH
Confidence 23344 788875 1110 00 111 1111 11 1122233346999999 8999999
Q ss_pred ccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 345 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 345 la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
....|+++||||.|+.||...-.++..++-+ ++. +.|.|++.|.+...--||.+.++.||++.-.
T Consensus 689 iLK~P~iIlLDEATSALDT~tER~IQaaL~r-lca-~RTtIVvAHRLSTivnAD~ILvi~~G~IvEr 753 (790)
T KOG0056|consen 689 ILKAPSIILLDEATSALDTNTERAIQAALAR-LCA-NRTTIVVAHRLSTIVNADLILVISNGRIVER 753 (790)
T ss_pred HhcCCcEEEEcchhhhcCCccHHHHHHHHHH-Hhc-CCceEEEeeeehheecccEEEEEeCCeEeec
Confidence 9999999999999999999998888775544 554 5688999999887777899999999988653
No 403
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.68 E-value=4.1e-16 Score=158.40 Aligned_cols=143 Identities=18% Similarity=0.152 Sum_probs=95.2
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhh-------h-------hhc-------eeecCCCCC--CchHH--H
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLM-------S-------KAG-------LYLPAKNHP--RLPWF--D 313 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~-------a-------q~G-------~~vP~~~~~--~l~~~--d 313 (752)
+.++.+.+| +.+|+||||+||||+|.+|.+...- + +.| ......+.. ..... +
T Consensus 14 ~~~l~f~~g--l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 91 (198)
T cd03276 14 HLQIEFGPR--VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQD 91 (198)
T ss_pred eeEEecCCC--eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHH
Confidence 456677766 7899999999999999999432100 0 001 011000000 01111 2
Q ss_pred HHHHHcCCchhhhcCcccchHHHH-HHHHHHHc----cCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc--CCcEEEE
Q 004463 314 LILADIGDHQSLEQNLSTFSGHIS-RIVDILEL----VSRESLVLIDEIGSGTDPSEGVALATSILQYLRD--RVGLAVV 386 (752)
Q Consensus 314 ~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~l----a~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~--~~~tvii 386 (752)
.+...+...+..++.+.+||+||+ ++.+++++ +.+|+++|||||++|+|+.....+...+.+...+ .+.++|+
T Consensus 92 ~~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii 171 (198)
T cd03276 92 MARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFI 171 (198)
T ss_pred HHHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 222223335567889999999999 78887777 6899999999999999999999999966665444 2358999
Q ss_pred EecchhHHhhhcccccc
Q 004463 387 TTHYADLSCLKDKDTRF 403 (752)
Q Consensus 387 tTH~~~l~~~a~~~~~i 403 (752)
+||+++...-.|++..+
T Consensus 172 ~th~~~~i~~~d~v~~~ 188 (198)
T cd03276 172 TPQDISGLASSDDVKVF 188 (198)
T ss_pred ECCcccccccccceeEE
Confidence 99998854434555444
No 404
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.67 E-value=2.6e-16 Score=184.48 Aligned_cols=152 Identities=22% Similarity=0.317 Sum_probs=124.4
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------------------hhhhceeecCCCC--CCch------
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLYLPAKNH--PRLP------ 310 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------~aq~G~~vP~~~~--~~l~------ 310 (752)
+++..+.+| ++++|.||.||||||||+++ |-..- +.++-.||+|+.. ..++
T Consensus 48 ~vsg~~~~G-el~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~ 126 (613)
T KOG0061|consen 48 GVSGTAKPG-ELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLR 126 (613)
T ss_pred CcEEEEecC-eEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHH
Confidence 899999999 99999999999999999999 33321 1233457777641 1222
Q ss_pred ------------------HHHHHHHHcCCchhhhcCcc-----cchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhH
Q 004463 311 ------------------WFDLILADIGDHQSLEQNLS-----TFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 366 (752)
Q Consensus 311 ------------------~~d~i~~~ig~~~~i~~~~s-----tlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~ 366 (752)
.++.++..+|+.+-.+..+. .+||||+ |++++..++++|++|+|||||+|||....
T Consensus 127 f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA 206 (613)
T KOG0061|consen 127 FSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSA 206 (613)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhH
Confidence 25677888888866666665 5999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecchh--HHhhhcccccccCCceeecc
Q 004463 367 VALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFENAATEFSL 412 (752)
Q Consensus 367 ~~L~~all~~l~~~~~tviitTH~~~--l~~~a~~~~~i~~g~v~~~~ 412 (752)
..+.. +++.+++.|.|||+|=|.+. +..+-|+...+.+|++.|..
T Consensus 207 ~~vv~-~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 207 LQVVQ-LLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred HHHHH-HHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 99998 66667777999999999965 77889999999999988863
No 405
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.67 E-value=1.6e-16 Score=191.23 Aligned_cols=167 Identities=16% Similarity=0.220 Sum_probs=125.1
Q ss_pred CCeEEEcccccccCCee---E--eeeEEEccCceEEEEEcCCCCCHHHHHHHH--------Hhhhh-------------h
Q 004463 241 NSEMTVGSLSKGISDFP---V--PIDIKVECETRVVVITGPNTGGKTASMKTL--------GLASL-------------M 294 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~~---v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i--------Gli~~-------------~ 294 (752)
+|-++++||+|.|+.+| | ++++++..| +.++|+||+||||||.+-++ |-+.+ .
T Consensus 985 ~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~G-qTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR 1063 (1228)
T KOG0055|consen 985 KGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAG-QTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLR 1063 (1228)
T ss_pred eeEEEEeeeEeeCCCCCCchhhcCCcEEecCC-CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHH
Confidence 35689999999998765 3 899999999 89999999999999999998 22221 2
Q ss_pred hhhceeecCCCCC-CchHHHHHH------------------------HHc--CCchhhhcCcccchHHHH-HHHHHHHcc
Q 004463 295 SKAGLYLPAKNHP-RLPWFDLIL------------------------ADI--GDHQSLEQNLSTFSGHIS-RIVDILELV 346 (752)
Q Consensus 295 aq~G~~vP~~~~~-~l~~~d~i~------------------------~~i--g~~~~i~~~~stlSgg~k-rl~~i~~la 346 (752)
.|+| .|.|++.- .-++.++|. ..+ |.+-.+-..-..|||||| |+++|++++
T Consensus 1064 ~~i~-lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAil 1142 (1228)
T KOG0055|consen 1064 KQIG-LVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAIL 1142 (1228)
T ss_pred Hhcc-eeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHH
Confidence 3444 45555410 011122221 011 222233445678999999 999999999
Q ss_pred CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 347 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 347 ~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
.+|++|||||.||.||.++-..+-+| ++.... |.|+|+++|.+....-||.+.+++||.+.-.
T Consensus 1143 RnPkILLLDEATSALDseSErvVQeA-Ld~a~~-gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~ 1205 (1228)
T KOG0055|consen 1143 RNPKILLLDEATSALDSESERVVQEA-LDRAME-GRTTIVIAHRLSTIQNADVIAVLKNGKVVEQ 1205 (1228)
T ss_pred cCCCeeeeeccchhhhhhhHHHHHHH-HHHhhc-CCcEEEEecchhhhhcCCEEEEEECCEEEec
Confidence 99999999999999999887777774 454444 6899999999998899999999999988653
No 406
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.67 E-value=3.1e-16 Score=170.35 Aligned_cols=155 Identities=25% Similarity=0.320 Sum_probs=120.2
Q ss_pred CCeEEEcccccccCCeeEeee-EEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCC-------------
Q 004463 241 NSEMTVGSLSKGISDFPVPID-IKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH------------- 306 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~~v~id-l~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~------------- 306 (752)
...++-.++++.||+..+.++ =++..| ++++++||||-|||||.|++ +|...|.++.
T Consensus 340 ~~lv~y~~~~k~~g~F~L~V~~G~i~~g-EvigilGpNgiGKTTFvk~L--------AG~ikPdeg~~~~~~vSyKPQyI 410 (591)
T COG1245 340 DTLVEYPDLKKTYGDFKLEVEEGEIYDG-EVIGILGPNGIGKTTFVKLL--------AGVIKPDEGSEEDLKVSYKPQYI 410 (591)
T ss_pred ceeeecchheeecCceEEEecCCeeecc-eEEEEECCCCcchHHHHHHH--------hccccCCCCCCccceEeecceee
Confidence 345566778888887554332 245667 99999999999999999999 5555555441
Q ss_pred -CCc--h-----------------HHHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHh
Q 004463 307 -PRL--P-----------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 365 (752)
Q Consensus 307 -~~l--~-----------------~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~ 365 (752)
+.. + +...++.-+.+++.+++.+..||||+. |++++.+++.+.+|.|||||.++||.+.
T Consensus 411 ~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEq 490 (591)
T COG1245 411 SPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQ 490 (591)
T ss_pred cCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHH
Confidence 100 0 122344455677889999999999987 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhccccccc
Q 004463 366 GVALATSILQYLRDRVGLAVVTTHYADLSC-LKDKDTRFE 404 (752)
Q Consensus 366 ~~~L~~all~~l~~~~~tviitTH~~~l~~-~a~~~~~i~ 404 (752)
+...+.+|-+....++.|.+++-||..+.. ++|+.+.|.
T Consensus 491 R~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 491 RIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 999999888877778899999999988665 566665553
No 407
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.66 E-value=1.3e-16 Score=151.45 Aligned_cols=100 Identities=27% Similarity=0.483 Sum_probs=74.5
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------------------hhhhceeecCCCC--CCchH-----
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLYLPAKNH--PRLPW----- 311 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------~aq~G~~vP~~~~--~~l~~----- 311 (752)
++||++.+| ++++|+|||||||||||+++ |+..+ ..+...++|+... ..+++
T Consensus 3 ~v~~~i~~g-~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~ 81 (137)
T PF00005_consen 3 NVSLEIKPG-EIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENES 81 (137)
T ss_dssp EEEEEEETT-SEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHH
T ss_pred ceEEEEcCC-CEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 578999999 99999999999999999999 55432 1222334555421 11211
Q ss_pred ---HHHHHHHcCCchhhhcCc----ccchHHHH-HHHHHHHccCCCcEEEEeCCCC
Q 004463 312 ---FDLILADIGDHQSLEQNL----STFSGHIS-RIVDILELVSRESLVLIDEIGS 359 (752)
Q Consensus 312 ---~d~i~~~ig~~~~i~~~~----stlSgg~k-rl~~i~~la~~~~LlLLDEp~~ 359 (752)
++.++..++..+..+..+ +.||+|++ |+.++++++.+|+++||||||+
T Consensus 82 ~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 82 DERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 344566677655445555 99999999 8999999999999999999996
No 408
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.63 E-value=2.5e-15 Score=181.66 Aligned_cols=95 Identities=28% Similarity=0.250 Sum_probs=80.1
Q ss_pred HHHcCCch-hhhcCcccchHHHH-HHHHHHHccC---CCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 004463 316 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVS---RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 390 (752)
Q Consensus 316 ~~~ig~~~-~i~~~~stlSgg~k-rl~~i~~la~---~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~ 390 (752)
+..+|+.. .+.+.+++|||||+ |+.++++++. +|+|+||||||+|||+.+...|.. ++..+.+.|.|+|++||+
T Consensus 812 L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~-~L~~l~~~G~TVIvi~H~ 890 (924)
T TIGR00630 812 LCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLE-VLQRLVDQGNTVVVIEHN 890 (924)
T ss_pred HHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCC
Confidence 44567764 47889999999998 8999988886 589999999999999999999999 455567778999999999
Q ss_pred hhHHhhhcccccc------cCCceeec
Q 004463 391 ADLSCLKDKDTRF------ENAATEFS 411 (752)
Q Consensus 391 ~~l~~~a~~~~~i------~~g~v~~~ 411 (752)
+++...||+++.+ .+|++.+.
T Consensus 891 ~~~i~~aD~ii~Lgp~~G~~gG~iv~~ 917 (924)
T TIGR00630 891 LDVIKTADYIIDLGPEGGDGGGTIVAS 917 (924)
T ss_pred HHHHHhCCEEEEecCCccCCCCEEEEe
Confidence 9977789999888 57777654
No 409
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.3e-15 Score=163.93 Aligned_cols=164 Identities=18% Similarity=0.219 Sum_probs=117.2
Q ss_pred EEEcccccccCCe--eEeeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhh--hhhhc-----eeecCCCCCCch----
Q 004463 244 MTVGSLSKGISDF--PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASL--MSKAG-----LYLPAKNHPRLP---- 310 (752)
Q Consensus 244 l~~~~ls~~y~~~--~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~--~aq~G-----~~vP~~~~~~l~---- 310 (752)
|.++|.+.+-.++ +|+-|+.|-.| +.++++||||-|||||||.|+--.+ -..+- .-|-++..+.+.
T Consensus 265 IKiEnF~ISA~Gk~LFvnA~L~Iv~G-RRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~ 343 (807)
T KOG0066|consen 265 IKIENFDISAQGKLLFVNASLTIVYG-RRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLK 343 (807)
T ss_pred ceeeeeeeecccceeeeccceEEEec-ceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHH
Confidence 5677777776554 45889999999 8999999999999999999932111 00000 001111100000
Q ss_pred -----------------------------------------------HHHHHHHHcCCch-hhhcCcccchHHHH-HHHH
Q 004463 311 -----------------------------------------------WFDLILADIGDHQ-SLEQNLSTFSGHIS-RIVD 341 (752)
Q Consensus 311 -----------------------------------------------~~d~i~~~ig~~~-~i~~~~stlSgg~k-rl~~ 341 (752)
-..+|++-+|.+. .-+++...||||.+ |+++
T Consensus 344 aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSL 423 (807)
T KOG0066|consen 344 ADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSL 423 (807)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhH
Confidence 0224455566543 44677788999999 9999
Q ss_pred HHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeecc
Q 004463 342 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL 412 (752)
Q Consensus 342 i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~~ 412 (752)
++++...|.||+|||||+|||... +.| +-.||.....|++|+|||.. |..+|..++.+.+..+.++.
T Consensus 424 ARALflEPTLLMLDEPTNHLDLNA---VIW-LdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYr 491 (807)
T KOG0066|consen 424 ARALFLEPTLLMLDEPTNHLDLNA---VIW-LDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYR 491 (807)
T ss_pred HHHHhcCceeeeecCCccccccce---eee-hhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhhhhc
Confidence 999999999999999999999954 444 55677777889999999977 67799999888887766553
No 410
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.61 E-value=5.3e-15 Score=179.18 Aligned_cols=95 Identities=26% Similarity=0.252 Sum_probs=80.9
Q ss_pred HHHcCCch-hhhcCcccchHHHH-HHHHHHHccCCC---cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 004463 316 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRE---SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 390 (752)
Q Consensus 316 ~~~ig~~~-~i~~~~stlSgg~k-rl~~i~~la~~~---~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~ 390 (752)
+..+|+.. .+++.+++|||||+ |+.++++++.+| +|+||||||+|||+.+...|.. ++..+.+.|.|||++||+
T Consensus 814 L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~-~L~~l~~~G~TVIiitH~ 892 (943)
T PRK00349 814 LVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLE-VLHRLVDKGNTVVVIEHN 892 (943)
T ss_pred HHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecC
Confidence 44567764 47889999999999 899999999998 9999999999999999999998 555677778999999999
Q ss_pred hhHHhhhcccccc------cCCceeec
Q 004463 391 ADLSCLKDKDTRF------ENAATEFS 411 (752)
Q Consensus 391 ~~l~~~a~~~~~i------~~g~v~~~ 411 (752)
+++...|++++.+ .+|.+.+.
T Consensus 893 ~~~i~~aD~ii~Lgp~~G~~~G~Iv~~ 919 (943)
T PRK00349 893 LDVIKTADWIIDLGPEGGDGGGEIVAT 919 (943)
T ss_pred HHHHHhCCEEEEecCCcCCCCCEEEEe
Confidence 9877789999888 46776654
No 411
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.60 E-value=3.1e-15 Score=148.10 Aligned_cols=168 Identities=17% Similarity=0.242 Sum_probs=124.4
Q ss_pred CCCeEEEcccccccCC-eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-H-------hhhhhhhhce---------
Q 004463 240 ENSEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-G-------LASLMSKAGL--------- 299 (752)
Q Consensus 240 g~~~l~~~~ls~~y~~-~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-G-------li~~~aq~G~--------- 299 (752)
++..+++.++.|.|.. .++ ++|+.++.| ..+.++|.||+|||||||++ | .+.++.+..+
T Consensus 10 ~~~aievsgl~f~y~~~dP~~~Dfnldlp~g-sRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYKVSDPIFFDFNLDLPAG-SRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred ccceEEEeccEEecccCCceEEEEeeccCCC-ceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 4567899999999953 233 999999999 78999999999999999999 2 1222111100
Q ss_pred -----------------eecCCCCCCchHHHHHHHHcCC-------------chhhhcCcccchHHHH-HHHHHHHccCC
Q 004463 300 -----------------YLPAKNHPRLPWFDLILADIGD-------------HQSLEQNLSTFSGHIS-RIVDILELVSR 348 (752)
Q Consensus 300 -----------------~vP~~~~~~l~~~d~i~~~ig~-------------~~~i~~~~stlSgg~k-rl~~i~~la~~ 348 (752)
-+|-.+ .++ ...++..++- +-++.-.....|-|++ |+.+.+.++.+
T Consensus 89 dl~YLGgeW~~~~~~agevplq~--D~s-ae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~P 165 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAGEVPLQG--DIS-AEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKP 165 (291)
T ss_pred ceeEecccccccccccccccccc--ccc-HHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccc
Confidence 111111 111 1222222221 1134456678899999 78888999999
Q ss_pred CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 349 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 349 ~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
=.+|||||.|-.||...++.|.+-+.+..-.+|+||+++||..+ |.....+...+.+|.+...
T Consensus 166 fkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~ 229 (291)
T KOG2355|consen 166 FKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDN 229 (291)
T ss_pred eeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeec
Confidence 99999999999999999999998666767778999999999987 9999999999999987654
No 412
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.58 E-value=1.1e-14 Score=183.43 Aligned_cols=88 Identities=25% Similarity=0.283 Sum_probs=77.1
Q ss_pred HHHcCCchh-hhcCcccchHHHH-HHHHHHHcc---CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 004463 316 LADIGDHQS-LEQNLSTFSGHIS-RIVDILELV---SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 390 (752)
Q Consensus 316 ~~~ig~~~~-i~~~~stlSgg~k-rl~~i~~la---~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~ 390 (752)
+..+|+... .++.+.+|||||+ |+.++++++ .+|+++||||||+|||+.+...+.. ++..+.+.|.|||++||+
T Consensus 793 L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~-lL~~L~~~G~TVIiIsHd 871 (1809)
T PRK00635 793 LCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIY-VLQSLTHQGHTVVIIEHN 871 (1809)
T ss_pred HHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEeCC
Confidence 556777765 7899999999999 889988886 6999999999999999999999998 556677779999999999
Q ss_pred hhHHhhhccccccc
Q 004463 391 ADLSCLKDKDTRFE 404 (752)
Q Consensus 391 ~~l~~~a~~~~~i~ 404 (752)
+++..+||+++.+.
T Consensus 872 l~~i~~aDrVi~L~ 885 (1809)
T PRK00635 872 MHVVKVADYVLELG 885 (1809)
T ss_pred HHHHHhCCEEEEEc
Confidence 99668999998885
No 413
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.58 E-value=1.4e-14 Score=157.74 Aligned_cols=125 Identities=26% Similarity=0.307 Sum_probs=102.7
Q ss_pred ccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCC------------------------------------
Q 004463 265 ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPR------------------------------------ 308 (752)
Q Consensus 265 ~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~------------------------------------ 308 (752)
.+| .+++|+||||-||||.||++ +|-.+|.-|...
T Consensus 98 r~G-~V~GilG~NGiGKsTalkIL--------aGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~Q 168 (591)
T COG1245 98 RPG-KVVGILGPNGIGKSTALKIL--------AGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQ 168 (591)
T ss_pred CCC-cEEEEEcCCCccHHHHHHHH--------hCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchH
Confidence 356 89999999999999999999 665555433110
Q ss_pred ----------------------chHHHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHh
Q 004463 309 ----------------------LPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE 365 (752)
Q Consensus 309 ----------------------l~~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~ 365 (752)
-+.+|.+...+++...+++.++.||||+. |++++.+++.+.++.++|||++-||..+
T Consensus 169 YVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~q 248 (591)
T COG1245 169 YVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQ 248 (591)
T ss_pred HHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHH
Confidence 01255667788889999999999999987 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecchhHHh-hhcc
Q 004463 366 GVALATSILQYLRDRVGLAVVTTHYADLSC-LKDK 399 (752)
Q Consensus 366 ~~~L~~all~~l~~~~~tviitTH~~~l~~-~a~~ 399 (752)
+...+. +++.|.+.+.+||++.||+.+.. ++|.
T Consensus 249 Rl~~ar-~Irel~~~~k~ViVVEHDLavLD~lsD~ 282 (591)
T COG1245 249 RLNAAR-VIRELAEDGKYVIVVEHDLAVLDYLSDF 282 (591)
T ss_pred HHHHHH-HHHHHhccCCeEEEEechHHHHHHhhhe
Confidence 999999 55667776899999999988444 5553
No 414
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.57 E-value=1.6e-14 Score=144.25 Aligned_cols=130 Identities=17% Similarity=0.159 Sum_probs=84.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhhhhhhc----e--------eecCCCC--CCchHHHHHHHHcCCchhhhcCcccchH
Q 004463 269 RVVVITGPNTGGKTASMKTLGLASLMSKAG----L--------YLPAKNH--PRLPWFDLILADIGDHQSLEQNLSTFSG 334 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iGli~~~aq~G----~--------~vP~~~~--~~l~~~d~i~~~ig~~~~i~~~~stlSg 334 (752)
.+.+|+||||+|||++|..|.+........ . .-+.... +.+. |++.+..+--.+ ...+ ||+
T Consensus 23 ~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-f~~~~~~~~~~~--~~~~--LS~ 97 (178)
T cd03239 23 SFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEIT-FDKSYFLVLQGK--VEQI--LSG 97 (178)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEE-EECceEEecCCc--Cccc--CCH
Confidence 389999999999999999995542110000 0 0000000 0000 111111110011 1111 999
Q ss_pred HHH-HHHHHHHcc----CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccccc
Q 004463 335 HIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 404 (752)
Q Consensus 335 g~k-rl~~i~~la----~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~ 404 (752)
||+ ++.++++++ .+|+++|+|||++++|+.....+... +..+.+.|.++|++||+.++...+++++.+.
T Consensus 98 Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~-L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~ 171 (178)
T cd03239 98 GEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDM-IKEMAKHTSQFIVITLKKEMFENADKLIGVL 171 (178)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEECCHHHHhhCCeEEEEE
Confidence 999 788887764 68999999999999999999999884 4445555789999999998777888877654
No 415
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.57 E-value=1.1e-14 Score=166.51 Aligned_cols=160 Identities=21% Similarity=0.226 Sum_probs=121.1
Q ss_pred CCeEEEcccccccCCeeE---eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------h-hhceeecCCCCCC
Q 004463 241 NSEMTVGSLSKGISDFPV---PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S-KAGLYLPAKNHPR 308 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~~v---~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------a-q~G~~vP~~~~~~ 308 (752)
+.++.++||+..-++..+ +.+|.+++| +.+.|+||||||||||+|+| ||=++- + ..-+|+|+.+...
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G-~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p 468 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPG-ERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLP 468 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCC-CEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCC
Confidence 468899999998875433 999999999 89999999999999999999 444331 1 1236777765211
Q ss_pred ch------------------HHHHHHHHcCCchhhhc------CcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCCh
Q 004463 309 LP------------------WFDLILADIGDHQSLEQ------NLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 363 (752)
Q Consensus 309 l~------------------~~d~i~~~ig~~~~i~~------~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~ 363 (752)
.+ -..+++..+|+++.+++ =-..||+||+ |+++|+.+.++|++++|||-|+++|+
T Consensus 469 ~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe 548 (604)
T COG4178 469 QGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDE 548 (604)
T ss_pred CccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccCh
Confidence 11 13345666666654432 1247899998 89999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccc
Q 004463 364 SEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF 403 (752)
Q Consensus 364 ~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i 403 (752)
.....+.+.+.+.|- ++|+|-++|-..+..+..+...+
T Consensus 549 ~~e~~l~q~l~~~lp--~~tvISV~Hr~tl~~~h~~~l~l 586 (604)
T COG4178 549 ETEDRLYQLLKEELP--DATVISVGHRPTLWNFHSRQLEL 586 (604)
T ss_pred HHHHHHHHHHHhhCC--CCEEEEeccchhhHHHHhhheee
Confidence 999999886655432 68999999998888776665443
No 416
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.55 E-value=1.5e-14 Score=148.55 Aligned_cols=81 Identities=16% Similarity=0.129 Sum_probs=59.1
Q ss_pred hhcCcccchHHHHHHHHHH-----HccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcC-C-cEEEEEecchh-HHhh
Q 004463 325 LEQNLSTFSGHISRIVDIL-----ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-V-GLAVVTTHYAD-LSCL 396 (752)
Q Consensus 325 i~~~~stlSgg~krl~~i~-----~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~-~-~tviitTH~~~-l~~~ 396 (752)
....+.+||+||+++..+. .++.+|+++|+|||++|+|+.....+...+.+ +.+. | .++|++||++. ...+
T Consensus 120 ~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~-~~~~~g~~~viiith~~~~~~~~ 198 (213)
T cd03277 120 QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVE-TACKEGTSQYFLITPKLLPGLNY 198 (213)
T ss_pred cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHH-HhhcCCCceEEEEchhhccCCcc
Confidence 3557789999999654432 23689999999999999999999999985555 4444 5 57999999864 4455
Q ss_pred hc--ccccccCC
Q 004463 397 KD--KDTRFENA 406 (752)
Q Consensus 397 a~--~~~~i~~g 406 (752)
++ ++..+.+|
T Consensus 199 ~~~~~v~~l~~g 210 (213)
T cd03277 199 HEKMTVLCVYNG 210 (213)
T ss_pred cCceEEEEEecC
Confidence 54 34445544
No 417
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=99.54 E-value=1.1e-14 Score=127.20 Aligned_cols=72 Identities=35% Similarity=0.476 Sum_probs=61.6
Q ss_pred eeeccccHHHHHHHHHHHHHcc--CCCCcEEEEeccc----chHHHHHHHHHh---hcCCCcccccCCCCCCC--ceEEE
Q 004463 681 LDLRGMRVEEASHQLDIALACW--ESRSVLFVIHGMG----TGVVKERVLEIL---RNHPRVAKYEQESPMNY--GCTVA 749 (752)
Q Consensus 681 ldlrG~r~eeA~~~vd~~ld~~--~~~~~v~IiHG~G----tG~Lr~~v~~~L---~~~p~V~~~~~~~~~~~--G~tvv 749 (752)
|||+||+++||+..|+.||+.+ .+...++||||+| +|+||++|++|| ..+|.|..|+.+++..| |+|+|
T Consensus 1 iDLHG~~~~eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~Lk~~V~~~L~~~~~~~~v~~~~~~~~~~g~~G~~~V 80 (83)
T PF01713_consen 1 IDLHGLTVEEALRALEEFLDEARQRGIRELRIITGKGNHSKGGVLKRAVRRWLEEGYQYEEVLAYRDAEPEDGNSGATIV 80 (83)
T ss_dssp EE-TTS-HHHHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSHHHHHHHHHHHHTHCCTTEEEEEE--CCCTGGGEEEE
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCcHHHHHHHHHHhhhccchhheeeecCCCCCCCeEEEE
Confidence 7999999999999999999996 7889999999999 999999999999 88999999999999864 89999
Q ss_pred EEC
Q 004463 750 YIK 752 (752)
Q Consensus 750 ~~~ 752 (752)
+||
T Consensus 81 ~lk 83 (83)
T PF01713_consen 81 YLK 83 (83)
T ss_dssp EE-
T ss_pred EeC
Confidence 986
No 418
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.50 E-value=9.4e-14 Score=171.09 Aligned_cols=168 Identities=15% Similarity=0.196 Sum_probs=131.7
Q ss_pred CCeEEEcccccccCC---e-eE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh------hhceeecCCCC--
Q 004463 241 NSEMTVGSLSKGISD---F-PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------KAGLYLPAKNH-- 306 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~---~-~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a------q~G~~vP~~~~-- 306 (752)
+..++++|.+++++. . .+ ++||++++| +.++|+||-|||||+||.+| |.+..+. ..-.|+||.+-
T Consensus 516 ~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G-~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ 594 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSESPEPTLKDINFEIKKG-QLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQ 594 (1381)
T ss_pred CceEEEeeeeEecCCCCCcccccceeEEecCC-CEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhh
Confidence 345788899998864 1 23 999999999 99999999999999999999 6554421 12258888751
Q ss_pred -CCc------------hHHHHHHHHcCCc-----------hhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCC
Q 004463 307 -PRL------------PWFDLILADIGDH-----------QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 361 (752)
Q Consensus 307 -~~l------------~~~d~i~~~ig~~-----------~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~gl 361 (752)
.++ ..+++++..+.+. -.+-.+--+|||||| |+++|++.-.+.+++|||-|++.+
T Consensus 595 ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAV 674 (1381)
T KOG0054|consen 595 NGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAV 674 (1381)
T ss_pred CCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhh
Confidence 011 1244454444433 334466679999999 999999999999999999999999
Q ss_pred ChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 004463 362 DPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 362 D~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~ 410 (752)
|.+.+..|.+.++.-+.+ +.|+|++||..++-..||.++.++||++..
T Consensus 675 Dahvg~~if~~ci~~~L~-~KT~ILVTHql~~L~~ad~Iivl~~G~I~~ 722 (1381)
T KOG0054|consen 675 DAHVGKHIFEECIRGLLR-GKTVILVTHQLQFLPHADQIIVLKDGKIVE 722 (1381)
T ss_pred hHhhhHHHHHHHHHhhhc-CCEEEEEeCchhhhhhCCEEEEecCCeEec
Confidence 999999999988854443 689999999988888899999999998854
No 419
>smart00463 SMR Small MutS-related domain.
Probab=99.46 E-value=1.1e-13 Score=120.12 Aligned_cols=74 Identities=35% Similarity=0.406 Sum_probs=68.8
Q ss_pred CceeeccccHHHHHHHHHHHHHcc--CCC-CcEEEEecccchHH--HHHHHHHhhcCCCcccccCCCCCCCceEEEEEC
Q 004463 679 NSLDLRGMRVEEASHQLDIALACW--ESR-SVLFVIHGMGTGVV--KERVLEILRNHPRVAKYEQESPMNYGCTVAYIK 752 (752)
Q Consensus 679 ~~ldlrG~r~eeA~~~vd~~ld~~--~~~-~~v~IiHG~GtG~L--r~~v~~~L~~~p~V~~~~~~~~~~~G~tvv~~~ 752 (752)
++|||+||+++||+..|+.||+++ .+. ..++||||+|+|.+ +..|+.||.+++.|..|+++++.+.|+++|+++
T Consensus 2 ~~lDLHG~~~~eA~~~l~~~l~~~~~~~~~~~~~II~G~G~~s~~g~~~i~~~l~~~l~~~~~~~~~~~~~G~~~v~l~ 80 (80)
T smart00463 2 WSLDLHGLTVEEALTALDKFLNNARLKGLEQKLVIITGKGKHSLGGKSGVKPALKEHLRVESFRFAEEGNSGVLVVKLK 80 (80)
T ss_pred CeEEcCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEcccCCCccchhhHHHHHHhchhhcccccCCCCCCeEEEEEeC
Confidence 479999999999999999999996 666 79999999999999 999999999999999999999867899999974
No 420
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.46 E-value=2.1e-13 Score=146.90 Aligned_cols=146 Identities=21% Similarity=0.288 Sum_probs=109.4
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH-HhhhhhhhhceeecCCCC-----------------CCc---hHHHHHHH
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNH-----------------PRL---PWFDLILA 317 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~aq~G~~vP~~~~-----------------~~l---~~~d~i~~ 317 (752)
++||++.+| ++++|+|++|+||||+|+++ |....... -.|.|.+|. +.+ ++.+++..
T Consensus 401 ~vNL~ikpG-dvvaVvGqSGaGKttllRmi~G~~~~~~e-e~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s 478 (593)
T COG2401 401 NLNLEIKPG-DVVAVVGQSGAGKTTLLRMILGAQKGRGE-EKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRS 478 (593)
T ss_pred ceeeEecCC-CeEEEEecCCCCcchHHHHHHHHhhcccc-cccCCCCCceeccccchhhccCcccccccCchhHHHHHhh
Confidence 999999999 99999999999999999999 43322111 023344431 111 23444443
Q ss_pred H-------------cCCchh--hhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCC
Q 004463 318 D-------------IGDHQS--LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV 381 (752)
Q Consensus 318 ~-------------ig~~~~--i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~ 381 (752)
. .|+.|. ..+..+.||.|++ |..+|..++..|++++.||..++||+.+...++..+-+...+.|
T Consensus 479 ~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~g 558 (593)
T COG2401 479 KTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAG 558 (593)
T ss_pred ccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhC
Confidence 3 343332 3468899999999 99999999999999999999999999999999998888777789
Q ss_pred cEEEEEecchhHHh-h-hcccccccCC
Q 004463 382 GLAVVTTHYADLSC-L-KDKDTRFENA 406 (752)
Q Consensus 382 ~tviitTH~~~l~~-~-a~~~~~i~~g 406 (752)
.|++++||..++.. + -|..+.+.-|
T Consensus 559 iTlivvThrpEv~~AL~PD~li~vgYg 585 (593)
T COG2401 559 ITLIVVTHRPEVGNALRPDTLILVGYG 585 (593)
T ss_pred CeEEEEecCHHHHhccCCceeEEeecc
Confidence 99999999999654 5 3444444433
No 421
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.46 E-value=8e-14 Score=168.20 Aligned_cols=151 Identities=18% Similarity=0.257 Sum_probs=113.6
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH------Hhhh----h---------hhhhceeecCCC--CCCc--------
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL------GLAS----L---------MSKAGLYLPAKN--HPRL-------- 309 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i------Gli~----~---------~aq~G~~vP~~~--~~~l-------- 309 (752)
+|+=-+.+| ..++|.|++|+||||||+++ |.+. + .++.-.|+-|.. .+.+
T Consensus 809 ~V~G~~kPG-~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~f 887 (1391)
T KOG0065|consen 809 NVSGAFKPG-VLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRF 887 (1391)
T ss_pred cCceEecCC-ceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHH
Confidence 777788899 89999999999999999999 2221 1 111112332221 0111
Q ss_pred ----------------hHHHHHHHHcCCchhhhcCccc----chHHHH-HHHHHHHccCCC-cEEEEeCCCCCCChHhHH
Q 004463 310 ----------------PWFDLILADIGDHQSLEQNLST----FSGHIS-RIVDILELVSRE-SLVLIDEIGSGTDPSEGV 367 (752)
Q Consensus 310 ----------------~~~d~i~~~ig~~~~i~~~~st----lSgg~k-rl~~i~~la~~~-~LlLLDEp~~glD~~~~~ 367 (752)
.++++++..+++.+..+.-+.. ||.++| |+.++-.++.+| +||+|||||+|||..+..
T Consensus 888 SA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~ 967 (1391)
T KOG0065|consen 888 SAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAA 967 (1391)
T ss_pred HHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHH
Confidence 1367788888887666655554 999999 888889999999 999999999999999998
Q ss_pred HHHHHHHHHHhcCCcEEEEEecchh--HHhhhcccccccCC-ceeec
Q 004463 368 ALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFENA-ATEFS 411 (752)
Q Consensus 368 ~L~~all~~l~~~~~tviitTH~~~--l~~~a~~~~~i~~g-~v~~~ 411 (752)
.++. +++.+.+.|.|||+|-|.+. +.+.-|+...++.| .+++.
T Consensus 968 ~i~~-~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~ 1013 (1391)
T KOG0065|consen 968 IVMR-FLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYF 1013 (1391)
T ss_pred HHHH-HHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEe
Confidence 8888 88889999999999999975 56666777777654 55543
No 422
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.46 E-value=5.4e-13 Score=149.21 Aligned_cols=158 Identities=18% Similarity=0.169 Sum_probs=117.8
Q ss_pred CeEEEcccccccCC-eeE---eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhh-h-------h----hhceeecCCC
Q 004463 242 SEMTVGSLSKGISD-FPV---PIDIKVECETRVVVITGPNTGGKTASMKTLGLASL-M-------S----KAGLYLPAKN 305 (752)
Q Consensus 242 ~~l~~~~ls~~y~~-~~v---~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~-~-------a----q~G~~vP~~~ 305 (752)
.++++++|+.+-++ ..+ +++|+++.| .-+.|+||||||||.|||.+|-+-+ . . +--+|+||.+
T Consensus 432 n~i~~e~v~l~tPt~g~~lie~Ls~~V~~g-~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrP 510 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTNGDLLIENLSLEVPSG-QNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRP 510 (659)
T ss_pred ceEEeeeeeecCCCCCceeeeeeeeEecCC-CeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCC
Confidence 47889999988765 333 799999999 8999999999999999999944332 1 1 2236888887
Q ss_pred CCCchH--------------------------------HHHHHHHcCCch--hhhcCcccchHHHH-HHHHHHHccCCCc
Q 004463 306 HPRLPW--------------------------------FDLILADIGDHQ--SLEQNLSTFSGHIS-RIVDILELVSRES 350 (752)
Q Consensus 306 ~~~l~~--------------------------------~d~i~~~ig~~~--~i~~~~stlSgg~k-rl~~i~~la~~~~ 350 (752)
...++- ..+++.+.|--| ....=..+||+|++ |+++|+...++|.
T Consensus 511 Ymt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk 590 (659)
T KOG0060|consen 511 YMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPK 590 (659)
T ss_pred CccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCc
Confidence 432221 113344444222 33344578999988 9999999999999
Q ss_pred EEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccccc
Q 004463 351 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 404 (752)
Q Consensus 351 LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~ 404 (752)
+.+|||-|+.+|...-.++.. .+.+.|.|.|-++|...|..+-+....+.
T Consensus 591 ~AiLDE~TSAv~~dvE~~~Yr----~~r~~giT~iSVgHRkSL~kfHd~~L~~~ 640 (659)
T KOG0060|consen 591 FAILDECTSAVTEDVEGALYR----KCREMGITFISVGHRKSLWKFHDYVLRMD 640 (659)
T ss_pred eEEeechhhhccHHHHHHHHH----HHHHcCCeEEEeccHHHHHhhhhEEEEec
Confidence 999999999999987766665 34455999999999999988776665554
No 423
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.45 E-value=4.7e-13 Score=150.62 Aligned_cols=166 Identities=18% Similarity=0.202 Sum_probs=124.6
Q ss_pred CCeEEEcccccccCCeeEeeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh--------------------hhhce
Q 004463 241 NSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL 299 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------------aq~G~ 299 (752)
...+++++++..- .+-+++|++.+| ++++|.|-=|+|+|-+++++ |.-... ++-..
T Consensus 261 ~~~l~v~~l~~~~--~~~dvSf~vr~G-EIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~ 337 (500)
T COG1129 261 EPVLEVRNLSGGG--KVRDVSFTVRAG-EILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIA 337 (500)
T ss_pred CcEEEEecCCCCC--ceeCceeEEeCC-cEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCE
Confidence 3456677776542 234899999999 99999999999999999999 533210 11123
Q ss_pred eecCCCC-----CCchHHHHH--------------------------HHHcCC-chhhhcCcccchHHHH-HHHHHHHcc
Q 004463 300 YLPAKNH-----PRLPWFDLI--------------------------LADIGD-HQSLEQNLSTFSGHIS-RIVDILELV 346 (752)
Q Consensus 300 ~vP~~~~-----~~l~~~d~i--------------------------~~~ig~-~~~i~~~~stlSgg~k-rl~~i~~la 346 (752)
|+|-+.. ..+++.+++ ...++. ..+.++.+++||||-+ ++.+++.++
T Consensus 338 ~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~ 417 (500)
T COG1129 338 YVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLA 417 (500)
T ss_pred eCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHh
Confidence 5565431 112222222 222222 2456789999999987 799999999
Q ss_pred CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecch-hHHhhhcccccccCCceee
Q 004463 347 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA-DLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 347 ~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~-~l~~~a~~~~~i~~g~v~~ 410 (752)
++|++|||||||+|.|.-....+.. ++..+.+.|.+||++|-++ |+..+||++++|.+|.+.-
T Consensus 418 ~~p~vLilDEPTRGIDVGAK~eIy~-li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 418 TDPKVLILDEPTRGIDVGAKAEIYR-LIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred cCCCEEEECCCCcCcccchHHHHHH-HHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence 9999999999999999999999998 8888999999988888875 5888999999999998854
No 424
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=2e-13 Score=147.93 Aligned_cols=167 Identities=14% Similarity=0.177 Sum_probs=121.9
Q ss_pred CCeEEEcccccccCC-eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH--------Hhhhh------------hhhh
Q 004463 241 NSEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL--------GLASL------------MSKA 297 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~-~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i--------Gli~~------------~aq~ 297 (752)
.+.+.+.+|+|.|.. +++ +++|.++.| +.++|+||.|+||||+++.+ |-+.+ +.++
T Consensus 260 ~g~v~F~~V~F~y~~~r~iL~~isf~i~~g-~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~a 338 (497)
T COG5265 260 LGAVAFINVSFAYDPRRPILNGISFTIPLG-KTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRA 338 (497)
T ss_pred cceEEEEEEEeeccccchhhcCccccccCc-cEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHH
Confidence 356778999999975 444 999999999 89999999999999999999 33322 2334
Q ss_pred ceeecCCCCCCch--HHHH------------H------------HHHcC--CchhhhcCcccchHHHH-HHHHHHHccCC
Q 004463 298 GLYLPAKNHPRLP--WFDL------------I------------LADIG--DHQSLEQNLSTFSGHIS-RIVDILELVSR 348 (752)
Q Consensus 298 G~~vP~~~~~~l~--~~d~------------i------------~~~ig--~~~~i~~~~stlSgg~k-rl~~i~~la~~ 348 (752)
...||++. +-+. .+.+ + +..+. ..--+-..--.+|||+| |+++++.++.+
T Consensus 339 Ig~VPQDt-vLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~ 417 (497)
T COG5265 339 IGIVPQDT-VLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKN 417 (497)
T ss_pred hCcCcccc-eehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcC
Confidence 45677774 1111 0000 0 11110 01111122236899999 89999999999
Q ss_pred CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 349 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 349 ~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
|++++|||.||.||...-.+|..++.+ +. .|.|.+++-|.+....-||.+++++||.+.-.
T Consensus 418 p~il~~deatsaldt~te~~iq~~l~~-~~-~~rttlviahrlsti~~adeiivl~~g~i~er 478 (497)
T COG5265 418 PPILILDEATSALDTHTEQAIQAALRE-VS-AGRTTLVIAHRLSTIIDADEIIVLDNGRIVER 478 (497)
T ss_pred CCEEEEehhhhHhhhhHHHHHHHHHHH-Hh-CCCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence 999999999999999998888775544 44 47899999999887777999999999987643
No 425
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.42 E-value=5.3e-13 Score=142.42 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=61.7
Q ss_pred ccchHHHH-HHHHHHHcc--C--CCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccccc
Q 004463 330 STFSGHIS-RIVDILELV--S--RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 404 (752)
Q Consensus 330 stlSgg~k-rl~~i~~la--~--~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~ 404 (752)
.+||+|++ |++++++.+ . +|+++|||||++|+|+.....+...+.+ +.. +.++|++||++.+..+|++.+.+.
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~-~~~-~~tii~isH~~~~~~~~d~~~~l~ 246 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKE-LSR-SHQVLCITHLPQVAAMADNHFLVE 246 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHH-HhC-CCEEEEEechHHHHHhcCcEEEEE
Confidence 35899999 777776433 3 9999999999999999999999985544 444 689999999998888999888776
Q ss_pred CC
Q 004463 405 NA 406 (752)
Q Consensus 405 ~g 406 (752)
++
T Consensus 247 ~~ 248 (276)
T cd03241 247 KE 248 (276)
T ss_pred Ee
Confidence 65
No 426
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.41 E-value=1e-12 Score=162.13 Aligned_cols=168 Identities=17% Similarity=0.208 Sum_probs=128.6
Q ss_pred CCeEEEcccccccCCe--eE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhh-------h------------hhh
Q 004463 241 NSEMTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-------L------------MSK 296 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~--~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~-------~------------~aq 296 (752)
+|.++++|++.+|... .| ++||++.+| +.+||+|.-|||||||+.++ .++. + +..
T Consensus 1136 ~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~-eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRs 1214 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNLPLVLKGISFTIKPG-EKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRS 1214 (1381)
T ss_pred CCeEEEEEeEEEeCCCCcchhcCceEEEcCC-ceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHh
Confidence 4789999999999643 44 999999999 99999999999999999998 3332 2 122
Q ss_pred hceeecCCCC-------CCchHHH--------HHHHHc-----------CCchhhhcCcccchHHHHH-HHHHHHccCCC
Q 004463 297 AGLYLPAKNH-------PRLPWFD--------LILADI-----------GDHQSLEQNLSTFSGHISR-IVDILELVSRE 349 (752)
Q Consensus 297 ~G~~vP~~~~-------~~l~~~d--------~i~~~i-----------g~~~~i~~~~stlSgg~kr-l~~i~~la~~~ 349 (752)
.-..+||++. ..+..|+ ..+... |++..+..+-+.||.|||| +.++++++.++
T Consensus 1215 rlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~s 1294 (1381)
T KOG0054|consen 1215 RLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKS 1294 (1381)
T ss_pred cCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccC
Confidence 2347898861 1222222 122222 3444556667899999996 78889999999
Q ss_pred cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCcee-ec
Q 004463 350 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATE-FS 411 (752)
Q Consensus 350 ~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~-~~ 411 (752)
++|+|||.|++.|+.+-.-|-..|.+.++ +||||.+-|..+-..-+|++.++++|++. ||
T Consensus 1295 kILvLDEATAsVD~~TD~lIQ~tIR~~F~--dcTVltIAHRl~TVmd~DrVlVld~G~v~Efd 1355 (1381)
T KOG0054|consen 1295 KILVLDEATASVDPETDALIQKTIREEFK--DCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFD 1355 (1381)
T ss_pred CEEEEecccccCChHHHHHHHHHHHHHhc--CCeEEEEeeccchhhhcCeEEEeeCCeEeecC
Confidence 99999999999999886666665555555 68999999999877789999999999984 44
No 427
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.37 E-value=9.5e-12 Score=137.60 Aligned_cols=155 Identities=18% Similarity=0.154 Sum_probs=109.0
Q ss_pred EEEcccccccCCe--eE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh--------hhhhceeecCCCCCCchH
Q 004463 244 MTVGSLSKGISDF--PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------MSKAGLYLPAKNHPRLPW 311 (752)
Q Consensus 244 l~~~~ls~~y~~~--~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~--------~aq~G~~vP~~~~~~l~~ 311 (752)
|.++||..--+.. .| .++|.+++| .-+.||||||||||.|+|++ ||-++ ..+.-+|+||.+....+-
T Consensus 482 I~lenIpvItP~~~vvv~~Ltf~i~~G-~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gt 560 (728)
T KOG0064|consen 482 IILENIPVITPAGDVLVPKLTFQIEPG-MHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGT 560 (728)
T ss_pred eEEecCceeccCcceeecceeEEecCC-ceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCc
Confidence 4566666554432 23 789999999 78999999999999999999 44443 123346778876322221
Q ss_pred -----------------------HHHHHHHcCCch---------hhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCC
Q 004463 312 -----------------------FDLILADIGDHQ---------SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 358 (752)
Q Consensus 312 -----------------------~d~i~~~ig~~~---------~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~ 358 (752)
...|+..+.++. .+..=--.||||++ |+..++..-+.|...+|||-|
T Consensus 561 lRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcT 640 (728)
T KOG0064|consen 561 LRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECT 640 (728)
T ss_pred ccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhh
Confidence 112222222221 11111236899999 899999999999999999999
Q ss_pred CCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccc
Q 004463 359 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF 403 (752)
Q Consensus 359 ~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i 403 (752)
+...++.-..+.++..++ |.+.|-+||.+.+..+-.+...+
T Consensus 641 sAvsidvE~~i~~~ak~~----gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 641 SAVSIDVEGKIFQAAKDA----GISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred cccccchHHHHHHHHHhc----CceEEEeecCccHHHHHHHHHhc
Confidence 999998888887765555 99999999999987766555444
No 428
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.32 E-value=1.2e-11 Score=156.36 Aligned_cols=89 Identities=27% Similarity=0.151 Sum_probs=74.9
Q ss_pred HHHcCCch-hhhcCcccchHHHH-HHHHHHHccCC---CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 004463 316 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR---ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 390 (752)
Q Consensus 316 ~~~ig~~~-~i~~~~stlSgg~k-rl~~i~~la~~---~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~ 390 (752)
+.++|++- .+-++..|||||+. |+.++..+..+ +.|++|||||.||++.+-..|.. +++.|.+.|.|||++.|+
T Consensus 1683 L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~-~l~~L~~~g~tvivieH~ 1761 (1809)
T PRK00635 1683 LIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLV-QLRTLVSLGHSVIYIDHD 1761 (1809)
T ss_pred HHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHH-HHHHHHhcCCeEEEEeCC
Confidence 34445442 35688999999998 89999877654 79999999999999999999999 678899999999999999
Q ss_pred hhHHhhhcccccccC
Q 004463 391 ADLSCLKDKDTRFEN 405 (752)
Q Consensus 391 ~~l~~~a~~~~~i~~ 405 (752)
+++...||.++.+..
T Consensus 1762 ~~~i~~aD~iidlgp 1776 (1809)
T PRK00635 1762 PALLKQADYLIEMGP 1776 (1809)
T ss_pred HHHHHhCCEEEEcCC
Confidence 998888998877643
No 429
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.26 E-value=4.7e-11 Score=138.31 Aligned_cols=78 Identities=26% Similarity=0.259 Sum_probs=68.7
Q ss_pred hhcCcccchHHHH-HHHHHHHc---cCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccc
Q 004463 325 LEQNLSTFSGHIS-RIVDILEL---VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKD 400 (752)
Q Consensus 325 i~~~~stlSgg~k-rl~~i~~l---a~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~ 400 (752)
+-++..|||||+. |+.++..+ .+...|.||||||.||-+.+-..|.. ++..|.+.|.|||++.|++++...||.+
T Consensus 816 LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~-VL~rLvd~GnTViVIEHNLdVIk~AD~I 894 (935)
T COG0178 816 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLE-VLHRLVDKGNTVIVIEHNLDVIKTADWI 894 (935)
T ss_pred cCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecccceEeecCEE
Confidence 4578899999998 89999765 45569999999999999999999998 8888999999999999999988888877
Q ss_pred ccc
Q 004463 401 TRF 403 (752)
Q Consensus 401 ~~i 403 (752)
+-+
T Consensus 895 IDL 897 (935)
T COG0178 895 IDL 897 (935)
T ss_pred EEc
Confidence 654
No 430
>COG2840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.26 E-value=7e-12 Score=123.87 Aligned_cols=73 Identities=34% Similarity=0.489 Sum_probs=66.9
Q ss_pred CceeeccccHHHHHHHHHHHHHcc--CCCCcEEEEeccc-----chHHHHHHHHHhhcCCCcccccCCCCCCCceEEEEE
Q 004463 679 NSLDLRGMRVEEASHQLDIALACW--ESRSVLFVIHGMG-----TGVVKERVLEILRNHPRVAKYEQESPMNYGCTVAYI 751 (752)
Q Consensus 679 ~~ldlrG~r~eeA~~~vd~~ld~~--~~~~~v~IiHG~G-----tG~Lr~~v~~~L~~~p~V~~~~~~~~~~~G~tvv~~ 751 (752)
..|||+|||.+||-.+|..||-.| .|+.-|.|||||| +|+||+.|..||.+||.|-.|..|+++.||.+-+||
T Consensus 97 ~~LDLHG~tq~eAr~~L~~Fi~~a~~~~~rcv~VihGkG~s~g~~~vLK~~Vp~WL~qhp~V~a~~~a~~~hGG~GAlyV 176 (184)
T COG2840 97 ARLDLHGLTQEEARQELGAFIARARAEGLRCVLVIHGKGRSKGSKPVLKSQVPRWLTQHPDVLAFHQAPRRHGGDGALYV 176 (184)
T ss_pred eeeeccCCCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCcCCCCchhHHHHHHHHHHhChHHHhhcccchhcCCceEEEE
Confidence 479999999999999999999997 6889999999999 999999999999999999999999999876554443
No 431
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.18 E-value=1.6e-10 Score=118.87 Aligned_cols=71 Identities=21% Similarity=0.243 Sum_probs=49.9
Q ss_pred cchHHHH-HHHHHH----HccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccc
Q 004463 331 TFSGHIS-RIVDIL----ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF 403 (752)
Q Consensus 331 tlSgg~k-rl~~i~----~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i 403 (752)
.||||++ .+++++ ....+.+++|||||.++||+.....++. ++..+.+ ..-+|++||...+...++..+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~-~l~~~~~-~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLAD-LLKELSK-QSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHH-HHHHHTT-TSEEEEE-S-HHHHTT-SEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc-ccccccc-ccccccccccccccccccccccc
Confidence 9999999 444443 2456889999999999999999999988 4444443 47899999999988888876654
No 432
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.18 E-value=5.5e-11 Score=126.58 Aligned_cols=75 Identities=24% Similarity=0.203 Sum_probs=53.1
Q ss_pred cccchHHHH-HHHHHHHcc---------CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecc-hhHHhhh
Q 004463 329 LSTFSGHIS-RIVDILELV---------SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY-ADLSCLK 397 (752)
Q Consensus 329 ~stlSgg~k-rl~~i~~la---------~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~-~~l~~~a 397 (752)
.+.+|+|++ ++.++++++ .+|+++|||||+++||+.....+...+.+ .+ .++++||+ ..+..+|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~----~~-q~ii~~~~~~~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEG----RV-QTFVTTTDLADFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhc----CC-CEEEEeCCchhccchh
Confidence 456799999 677776653 79999999999999999999887774433 23 34555554 4566666
Q ss_pred ---cccccccCCce
Q 004463 398 ---DKDTRFENAAT 408 (752)
Q Consensus 398 ---~~~~~i~~g~v 408 (752)
.+++.+.+|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 44566666654
No 433
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.18 E-value=6.4e-11 Score=117.96 Aligned_cols=146 Identities=14% Similarity=0.252 Sum_probs=103.9
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhh---------------------------hhhhhceeecCCCCCCch
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS---------------------------LMSKAGLYLPAKNHPRLP 310 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~---------------------------~~aq~G~~vP~~~~~~l~ 310 (752)
.+++++..| ++-+++|.+|||||-..|.| |.+. +.++-...+.+++.+-+.
T Consensus 25 ~v~ltlnEG-Ei~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLD 103 (330)
T COG4170 25 RVSMTLNEG-EIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLD 103 (330)
T ss_pred eeeeeeccc-eeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcC
Confidence 899999999 99999999999999999999 3331 011111222222211010
Q ss_pred ---------------------HHH----------HHHHHcCCch---hhhcCcccchHHHH-HHHHHHHccCCCcEEEEe
Q 004463 311 ---------------------WFD----------LILADIGDHQ---SLEQNLSTFSGHIS-RIVDILELVSRESLVLID 355 (752)
Q Consensus 311 ---------------------~~d----------~i~~~ig~~~---~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLD 355 (752)
++. .++-++|..+ -....+..|.-|+- ++.++++++..|.|||.|
T Consensus 104 PS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIAD 183 (330)
T COG4170 104 PSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIAD 183 (330)
T ss_pred hHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEecc
Confidence 011 2345556543 33456677777776 788889999999999999
Q ss_pred CCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchh-HHhhhcccccccCC
Q 004463 356 EIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENA 406 (752)
Q Consensus 356 Ep~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~-l~~~a~~~~~i~~g 406 (752)
|||+.++|.....+.. ++..+.+ .|.++++++||+. +...||++-++.-|
T Consensus 184 EPTN~~e~~Tq~QifR-LLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCG 235 (330)
T COG4170 184 EPTNSMEPTTQAQIFR-LLSRLNQNSNTTILLISHDLQMISQWADKINVLYCG 235 (330)
T ss_pred CCCcccCccHHHHHHH-HHHHhhccCCceEEEEcccHHHHHHHhhheEEEEec
Confidence 9999999999999998 6666665 4678999999977 77789887665444
No 434
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.08 E-value=2.4e-10 Score=138.89 Aligned_cols=95 Identities=24% Similarity=0.214 Sum_probs=81.4
Q ss_pred HHHcCCchh-hhcCcccchHHHH-HHHHHHHccCCC--cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecch
Q 004463 316 LADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRE--SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 391 (752)
Q Consensus 316 ~~~ig~~~~-i~~~~stlSgg~k-rl~~i~~la~~~--~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~ 391 (752)
+..+|+... +++.+++|||||+ |+.++++++.+| .|+||||||+||||.+...|.. ++..+.+.|.|||++||++
T Consensus 471 L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~-~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 471 LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIN-TLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHH-HHHHHHhCCCEEEEEECCH
Confidence 445666544 6899999999999 899999998875 8999999999999999999998 6666788899999999999
Q ss_pred hHHhhhcccccc------cCCceeec
Q 004463 392 DLSCLKDKDTRF------ENAATEFS 411 (752)
Q Consensus 392 ~l~~~a~~~~~i------~~g~v~~~ 411 (752)
+....||+++.+ .+|.+.+.
T Consensus 550 ~~i~~aD~vi~LgpgaG~~~G~Iv~~ 575 (924)
T TIGR00630 550 ETIRAADYVIDIGPGAGIHGGEVVAS 575 (924)
T ss_pred HHHhhCCEEEEecccccCCCCEEeec
Confidence 866799999999 67777654
No 435
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.07 E-value=3.4e-10 Score=122.90 Aligned_cols=137 Identities=22% Similarity=0.304 Sum_probs=105.0
Q ss_pred eeeEEEccC----ceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchH-----------------------
Q 004463 259 PIDIKVECE----TRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW----------------------- 311 (752)
Q Consensus 259 ~idl~l~~g----~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~----------------------- 311 (752)
+..+.+..| .++++.+|.||.|||||++++ +|...|..+ ..+|.
T Consensus 354 ~F~L~i~~GefsdSeiivmlgEngtgkTTfi~ml--------ag~~~pd~~-~e~p~lnVSykpqkispK~~~tvR~ll~ 424 (592)
T KOG0063|consen 354 DFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRML--------AGRLKPDEG-GEIPVLNVSYKPQKISPKREGTVRQLLH 424 (592)
T ss_pred eEEEEEeecccCCceeEEEEccCCcchhHHHHHH--------hcCCCCCcc-CcccccceeccccccCccccchHHHHHH
Confidence 444444332 478999999999999999999 665555443 12211
Q ss_pred ------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHh
Q 004463 312 ------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR 378 (752)
Q Consensus 312 ------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~ 378 (752)
...++.-+-.++.+++.+.+||||+. |+++++.+-.+.++.|+|||.+-||.+.+...+.-+.+++.
T Consensus 425 ~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfil 504 (592)
T KOG0063|consen 425 TKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFIL 504 (592)
T ss_pred HHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHH
Confidence 11122233456778899999999988 89999999999999999999999999999888887888888
Q ss_pred cCCcEEEEEecchhHHh-hhccccccc
Q 004463 379 DRVGLAVVTTHYADLSC-LKDKDTRFE 404 (752)
Q Consensus 379 ~~~~tviitTH~~~l~~-~a~~~~~i~ 404 (752)
....|-.++.||.-... ++|+++.+.
T Consensus 505 hakktafvVEhdfImaTYladrvivf~ 531 (592)
T KOG0063|consen 505 HAKKTAFVVEHDFIMATYLADRVIVFE 531 (592)
T ss_pred hccchhhhhhhHHHHHHhhcceeEEEe
Confidence 88889999999987665 677776554
No 436
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.05 E-value=3.5e-10 Score=137.68 Aligned_cols=95 Identities=25% Similarity=0.216 Sum_probs=81.4
Q ss_pred HHHcCCchh-hhcCcccchHHHH-HHHHHHHccCCC--cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecch
Q 004463 316 LADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRE--SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 391 (752)
Q Consensus 316 ~~~ig~~~~-i~~~~stlSgg~k-rl~~i~~la~~~--~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~ 391 (752)
+..+|+... +++.+.+|||||+ |+.++.+++.+| .|+||||||+||||.+...|.. ++..+.+.|.|||++||++
T Consensus 473 L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~-~L~~L~~~G~TVIvVeH~~ 551 (943)
T PRK00349 473 LVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIE-TLKHLRDLGNTLIVVEHDE 551 (943)
T ss_pred hhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCH
Confidence 445677654 7899999999999 899999998886 8999999999999999999999 6666788899999999999
Q ss_pred hHHhhhcccccc------cCCceeec
Q 004463 392 DLSCLKDKDTRF------ENAATEFS 411 (752)
Q Consensus 392 ~l~~~a~~~~~i------~~g~v~~~ 411 (752)
+....||+++.+ .+|.+.+.
T Consensus 552 ~~i~~aD~vi~LgpgaG~~~G~iv~~ 577 (943)
T PRK00349 552 DTIRAADYIVDIGPGAGVHGGEVVAS 577 (943)
T ss_pred HHHHhCCEEEEeccccCCCCCEEeec
Confidence 866679999998 77777554
No 437
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.04 E-value=1.3e-09 Score=120.98 Aligned_cols=169 Identities=19% Similarity=0.252 Sum_probs=128.4
Q ss_pred CCCeEEEcccccccCC--eeE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh--------------------h
Q 004463 240 ENSEMTVGSLSKGISD--FPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------S 295 (752)
Q Consensus 240 g~~~l~~~~ls~~y~~--~~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------------a 295 (752)
|..++++++|+..-.. ..+ ++||++..| ++++|.|-.|-|-+.|+..| |+-..- .
T Consensus 254 g~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~G-EIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r 332 (501)
T COG3845 254 GEVVLEVEDLSVKDRRGVTAVKDVSFEVRAG-EIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332 (501)
T ss_pred CCeEEEEeeeEeecCCCCceeeeeeeEEecC-cEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence 5567888998876643 334 999999999 99999999999999999999 554210 0
Q ss_pred hhc-eeecCCCC-----CCchHHHHH----------------------------HHHcCCc-hhhhcCcccchHHHH-HH
Q 004463 296 KAG-LYLPAKNH-----PRLPWFDLI----------------------------LADIGDH-QSLEQNLSTFSGHIS-RI 339 (752)
Q Consensus 296 q~G-~~vP~~~~-----~~l~~~d~i----------------------------~~~ig~~-~~i~~~~stlSgg~k-rl 339 (752)
..| .|+|.+.. ..+++++++ ...++.. .+...+..+||||.+ ++
T Consensus 333 ~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~ 412 (501)
T COG3845 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKL 412 (501)
T ss_pred hcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehh
Confidence 112 35565431 123333332 2223322 344567889999987 78
Q ss_pred HHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceee
Q 004463 340 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF 410 (752)
Q Consensus 340 ~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~ 410 (752)
.+++.+..+|+|||+..||.|||....+.+...+++ .++.|+.||++|-+++ +..+||++.+|.+|.+.-
T Consensus 413 IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e-~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~ 483 (501)
T COG3845 413 ILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLE-LRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483 (501)
T ss_pred hhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHH-HHhcCCEEEEEehhHHHHHHhhheeeeeeCCceec
Confidence 889999999999999999999999999888886666 6778999999999977 888999999999998754
No 438
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.98 E-value=2.5e-09 Score=105.35 Aligned_cols=69 Identities=22% Similarity=0.263 Sum_probs=59.3
Q ss_pred cCcccchHHHHHHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhh
Q 004463 327 QNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 396 (752)
Q Consensus 327 ~~~stlSgg~krl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~ 396 (752)
..+...|-|+-=++++..-.+..-+.|||||-++|.|.-...|.. ++..+.+.|+-+||+||.+-|..+
T Consensus 125 ~sLh~~SHGEsf~~i~~~rf~~~GiYiLDEPEa~LSp~RQlella-~l~~la~sGaQ~IiATHSPiLlAi 193 (233)
T COG3910 125 RSLHHMSHGESFLAIFHNRFNGQGIYILDEPEAALSPSRQLELLA-ILRDLADSGAQIIIATHSPILLAI 193 (233)
T ss_pred cchhhhccchHHHHHHHHHhccCceEEecCccccCCHHHHHHHHH-HHHHHHhcCCeEEEEecChhheeC
Confidence 346677888888888888889999999999999999998888887 888999999999999999776543
No 439
>PRK13695 putative NTPase; Provisional
Probab=98.98 E-value=8.2e-10 Score=109.66 Aligned_cols=134 Identities=19% Similarity=0.214 Sum_probs=80.2
Q ss_pred EEEEEcCCCCCHHHHHHHH-Hhhhhhh-hhceeecCCC---CCCch-----HH---HHHHHHcC--CchhhhcCcccchH
Q 004463 270 VVVITGPNTGGKTASMKTL-GLASLMS-KAGLYLPAKN---HPRLP-----WF---DLILADIG--DHQSLEQNLSTFSG 334 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i-Gli~~~a-q~G~~vP~~~---~~~l~-----~~---d~i~~~ig--~~~~i~~~~stlSg 334 (752)
.++|+|+||+|||||++.+ +.+...+ ..+.++.+.. ....+ +. ...+...+ ....+.+....+|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lsg 81 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGKYVVNLED 81 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceeeEEEehHH
Confidence 4789999999999999987 2221100 0011111100 00000 00 01122222 12233455667888
Q ss_pred HHH-HHHHHHHccCCCcEEEEeCCC--CCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCce
Q 004463 335 HIS-RIVDILELVSRESLVLIDEIG--SGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAAT 408 (752)
Q Consensus 335 g~k-rl~~i~~la~~~~LlLLDEp~--~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v 408 (752)
.++ ...++.....+|++||||||+ .++|+.....+.. +.+.+.++|+|+|+..+..+++++..+.++.+
T Consensus 82 le~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~-----~~~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i 153 (174)
T PRK13695 82 LERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEE-----VLDSEKPVIATLHRRSVHPFVQEIKSRPGGRV 153 (174)
T ss_pred HHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHH-----HHhCCCeEEEEECchhhHHHHHHHhccCCcEE
Confidence 888 666666777899999999964 3555444333333 33558899999999877788888888877765
No 440
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.95 E-value=2.7e-09 Score=113.37 Aligned_cols=113 Identities=19% Similarity=0.204 Sum_probs=66.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCC-----CchHHH---HHHHHcC-Cch-hhhcCcccchHHHH-
Q 004463 269 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP-----RLPWFD---LILADIG-DHQ-SLEQNLSTFSGHIS- 337 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~-----~l~~~d---~i~~~ig-~~~-~i~~~~stlSgg~k- 337 (752)
.-++|+||||+||||||+++ +|...|..|.. .+..++ .+...++ ..+ .+......|-+-.+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l--------~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~ 183 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDL--------ARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKA 183 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHH--------hCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHH
Confidence 46899999999999999999 77776765421 222222 2222211 111 12222222332222
Q ss_pred HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhh
Q 004463 338 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLK 397 (752)
Q Consensus 338 rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a 397 (752)
.-..++..+.+|+++|+|||++. ....++++.+. .|.++|+|||+..+..++
T Consensus 184 ~~~~~~i~~~~P~villDE~~~~-------e~~~~l~~~~~-~G~~vI~ttH~~~~~~~~ 235 (270)
T TIGR02858 184 EGMMMLIRSMSPDVIVVDEIGRE-------EDVEALLEALH-AGVSIIATAHGRDVEDLY 235 (270)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcH-------HHHHHHHHHHh-CCCEEEEEechhHHHHHH
Confidence 11222334579999999999742 22334555554 589999999987664443
No 441
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.82 E-value=1.6e-08 Score=100.84 Aligned_cols=119 Identities=15% Similarity=0.118 Sum_probs=77.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhhhh-hhhhceeecCCCCCCchHHHHHHHHcCC----------chhhhcCcccchHHHHH-
Q 004463 271 VVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGD----------HQSLEQNLSTFSGHISR- 338 (752)
Q Consensus 271 ~~I~GpNGsGKSTlLK~iGli~~-~aq~G~~vP~~~~~~l~~~d~i~~~ig~----------~~~i~~~~stlSgg~kr- 338 (752)
++|.||.|+|||||.-.+..-.. .....+|+..+.. ..-+...+..+|. ....+.....+|+++.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~--~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~ 79 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES--PEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSL 79 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC--HHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhh
Confidence 68999999999999887732222 2233456654431 1112222233332 23445566778888765
Q ss_pred ----HHHH--HHccCCCcEEEEeCCCCCCC---hHhHHHHHHHHHHHHhcCCcEEEEEecchh
Q 004463 339 ----IVDI--LELVSRESLVLIDEIGSGTD---PSEGVALATSILQYLRDRVGLAVVTTHYAD 392 (752)
Q Consensus 339 ----l~~i--~~la~~~~LlLLDEp~~glD---~~~~~~L~~all~~l~~~~~tviitTH~~~ 392 (752)
+..+ .....+|++|++|||++.+| +.....+.. ++..+.+.|.|+|+++|+..
T Consensus 80 ~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~-l~~~l~~~g~tvi~v~~~~~ 141 (187)
T cd01124 80 RLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRR-LLFALKRFGVTTLLTSEQSG 141 (187)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHH-HHHHHHHCCCEEEEEecccc
Confidence 1222 22456899999999999999 655555555 77778888999999999865
No 442
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.81 E-value=2.6e-08 Score=103.72 Aligned_cols=132 Identities=13% Similarity=0.227 Sum_probs=75.7
Q ss_pred EcccccccCCeeEeeeEEEccCceEEEEEcCCCCCHHHH-HHHH-HhhhhhhhhceeecCCCCCCchHHHHHHHHcCCc-
Q 004463 246 VGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTAS-MKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIGDH- 322 (752)
Q Consensus 246 ~~~ls~~y~~~~v~idl~l~~g~~~~~I~GpNGsGKSTl-LK~i-Gli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~- 322 (752)
++++.+.+++. +++| .+++|+||||+||||| ++.+ +++. ....+.|+..+.. .-.+..++ ..+|..
T Consensus 10 ~~~ld~~l~gg-------i~~g-~~~~i~G~~G~GKTtl~~~~~~~~~~-~g~~~~yi~~e~~-~~~~~~~~-~~~g~~~ 78 (230)
T PRK08533 10 RDELHKRLGGG-------IPAG-SLILIEGDESTGKSILSQRLAYGFLQ-NGYSVSYVSTQLT-TTEFIKQM-MSLGYDI 78 (230)
T ss_pred EeeeehhhCCC-------CCCC-cEEEEECCCCCCHHHHHHHHHHHHHh-CCCcEEEEeCCCC-HHHHHHHH-HHhCCch
Confidence 45555555442 5788 8999999999999999 5665 3322 2334456665442 22223332 334431
Q ss_pred -hhhhc------C-cccchHHHH---HHHHHHHc--cCCCcEEEEeCCCCCC----ChHhHHHHHHHHHHHHhcCCcEEE
Q 004463 323 -QSLEQ------N-LSTFSGHIS---RIVDILEL--VSRESLVLIDEIGSGT----DPSEGVALATSILQYLRDRVGLAV 385 (752)
Q Consensus 323 -~~i~~------~-~stlSgg~k---rl~~i~~l--a~~~~LlLLDEp~~gl----D~~~~~~L~~all~~l~~~~~tvi 385 (752)
+.... . ...+|+... .+..++.. ..+|+++++|||++++ |+.....+.. ++..+.+.|.+++
T Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~-~l~~l~~~g~tvi 157 (230)
T PRK08533 79 NKKLISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMA-FFKRISSLNKVII 157 (230)
T ss_pred HHHhhcCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHH-HHHHHHhCCCEEE
Confidence 11110 0 012343322 23333222 3579999999999999 7776677766 6677777777665
Q ss_pred EEec
Q 004463 386 VTTH 389 (752)
Q Consensus 386 itTH 389 (752)
+++|
T Consensus 158 ~t~~ 161 (230)
T PRK08533 158 LTAN 161 (230)
T ss_pred EEec
Confidence 5444
No 443
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.80 E-value=8.9e-09 Score=104.81 Aligned_cols=65 Identities=28% Similarity=0.305 Sum_probs=46.0
Q ss_pred CcccchHHHHHH-HHHHHcc--CCC-cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH
Q 004463 328 NLSTFSGHISRI-VDILELV--SRE-SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL 393 (752)
Q Consensus 328 ~~stlSgg~krl-~~i~~la--~~~-~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l 393 (752)
+++.+|.|++++ .++..+. ... .++++|||-+||.|.....|+. ++..+...+.-+|+|||.+.+
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~-~l~~~~~~~~QviitTHSp~i 301 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIE-LLKELSKKNIQVIITTHSPFI 301 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHH-HHHHTGGGSSEEEEEES-GGG
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHH-HHHhhCccCCEEEEeCccchh
Confidence 445669999976 4443333 333 9999999999999999999887 445555556789999999764
No 444
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.65 E-value=1.4e-07 Score=90.74 Aligned_cols=121 Identities=13% Similarity=0.104 Sum_probs=69.4
Q ss_pred EEEEEcCCCCCHHHHHHHH-HhhhhhhhhceeecCCCCCCchHHHHH--HHHcCCchh---hhcCcccchHHH-HHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLI--LADIGDHQS---LEQNLSTFSGHI-SRIVDI 342 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i-Gli~~~aq~G~~vP~~~~~~l~~~d~i--~~~ig~~~~---i~~~~stlSgg~-krl~~i 342 (752)
+++|+||||+||||+++.+ +........-.|+..+.. ........ +...+..+. ........+... .++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEE-IEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAER 79 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcc-hHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHH
Confidence 3789999999999999999 333222223344444432 11111111 111111111 111111222222 255566
Q ss_pred HHccCCCcEEEEeCCCCCC----------ChHhHHHHHHHHHHHHhcCCcEEEEEecchh
Q 004463 343 LELVSRESLVLIDEIGSGT----------DPSEGVALATSILQYLRDRVGLAVVTTHYAD 392 (752)
Q Consensus 343 ~~la~~~~LlLLDEp~~gl----------D~~~~~~L~~all~~l~~~~~tviitTH~~~ 392 (752)
.....++.++++|||++-+ ++.....+.. +...+.+.+.++|+++|...
T Consensus 80 ~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~vv~~~~~~~ 138 (165)
T cd01120 80 LRERGGDDLIILDELTRLVRALREIREGYPGELDEELRE-LLERARKGGVTVIFTLQVPS 138 (165)
T ss_pred HHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHH-HHHHHhcCCceEEEEEecCC
Confidence 7778899999999999544 4443444444 77777777899999999865
No 445
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.64 E-value=6.5e-08 Score=105.52 Aligned_cols=80 Identities=16% Similarity=0.167 Sum_probs=67.5
Q ss_pred HHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHH
Q 004463 316 LADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS 394 (752)
Q Consensus 316 ~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~ 394 (752)
...+.+...+++.+..+|||+. |.+++.+-+...++.++|||.+-||...+...+. .++.+..-...+|++.||+.+.
T Consensus 198 ~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~-~IRsl~~p~~YiIVVEHDLsVL 276 (592)
T KOG0063|consen 198 CDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAI-TIRSLINPDRYIIVVEHDLSVL 276 (592)
T ss_pred HHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHH-HHHHhhCCCCeEEEEEeechHH
Confidence 3344455677889999999887 8999999999999999999999999999998887 6666777778999999999865
Q ss_pred hh
Q 004463 395 CL 396 (752)
Q Consensus 395 ~~ 396 (752)
.+
T Consensus 277 Dy 278 (592)
T KOG0063|consen 277 DY 278 (592)
T ss_pred Hh
Confidence 53
No 446
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.61 E-value=9.8e-08 Score=116.55 Aligned_cols=152 Identities=22% Similarity=0.250 Sum_probs=113.6
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhh----------hhh---------hhceeecCCC--CCCc-------
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS----------LMS---------KAGLYLPAKN--HPRL------- 309 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~----------~~a---------q~G~~vP~~~--~~~l------- 309 (752)
|++.-+++| +++++.||.|||||||||.+ |-.. +-+ +.-.|.++.. .+.+
T Consensus 133 ~~sg~~~pg-~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTld 211 (1391)
T KOG0065|consen 133 DISGIIKPG-EMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLD 211 (1391)
T ss_pred CcceeEcCC-ceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhh
Confidence 899999999 99999999999999999999 3221 100 0011222221 0000
Q ss_pred ---------------h-------HHHHHHHHcCCchhhh-----cCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCC
Q 004463 310 ---------------P-------WFDLILADIGDHQSLE-----QNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 361 (752)
Q Consensus 310 ---------------~-------~~d~i~~~ig~~~~i~-----~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~gl 361 (752)
. ..|.++..+|+..-.+ ....-.|||+| |+..+-.++.+++++.+||+|+||
T Consensus 212 Fa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GL 291 (1391)
T KOG0065|consen 212 FAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGL 291 (1391)
T ss_pred HHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccc
Confidence 0 2345677778765443 34567899999 899999999999999999999999
Q ss_pred ChHhHHHHHHHHHHHHhcCCcEEEEEecchh--HHhhhcccccccCCceeec
Q 004463 362 DPSEGVALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 362 D~~~~~~L~~all~~l~~~~~tviitTH~~~--l~~~a~~~~~i~~g~v~~~ 411 (752)
|..+...+..++...-+..+.|++++-|... ...+-|.+..+.+|.+.|.
T Consensus 292 DSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~ 343 (1391)
T KOG0065|consen 292 DSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQ 343 (1391)
T ss_pred cHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEe
Confidence 9999999999777766667888888888853 6667888999999988775
No 447
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.61 E-value=1.4e-07 Score=110.73 Aligned_cols=114 Identities=19% Similarity=0.265 Sum_probs=81.9
Q ss_pred ccchHHHH-HHHHHHHccCC----CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccccc
Q 004463 330 STFSGHIS-RIVDILELVSR----ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 404 (752)
Q Consensus 330 stlSgg~k-rl~~i~~la~~----~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~ 404 (752)
.++||||+ |+.++++++.. |+++|||||++|+|+.....+.. ++..+.+ +.+||++||++.+..+|++++.+.
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~-~l~~l~~-~~~vi~iTH~~~~~~~ad~~~~l~ 516 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAK-KLAQLSE-RHQVLCVTHLPQVAAHADAHFKVE 516 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHhc-CCEEEEEEChHHHHHhcCeEEEEE
Confidence 58999999 89999887664 69999999999999999999998 5555664 789999999999888999998887
Q ss_pred CCceeeccCccccchhhccCCCCCchHHHHHHHcC-C--CHHHHHHHHHH
Q 004463 405 NAATEFSLETLRPTYRILWGSTGDSNALNIAKSIG-F--DRKIIQRAQKL 451 (752)
Q Consensus 405 ~g~v~~~~~~l~~~Y~l~~g~~~~s~a~~ia~~~g-~--p~~ii~~A~~~ 451 (752)
++.. +..+... .....+...-.+||+++| . .+..+..|++.
T Consensus 517 k~~~--~~~t~s~----i~~L~~~~r~~EiArml~G~~~t~~~~~~A~~l 560 (563)
T TIGR00634 517 KEGL--DGRTATR----VRPLSGEERVAELARMLAGLEKSDLTLAHAQEL 560 (563)
T ss_pred EccC--CCcEEEE----EEECCccHHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 6542 1111111 111233445568899884 2 34445555544
No 448
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.60 E-value=7.1e-08 Score=120.77 Aligned_cols=81 Identities=16% Similarity=0.067 Sum_probs=67.0
Q ss_pred hhhhcCcccchHHHH-HHHHHHHccC----------CCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecch
Q 004463 323 QSLEQNLSTFSGHIS-RIVDILELVS----------RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 391 (752)
Q Consensus 323 ~~i~~~~stlSgg~k-rl~~i~~la~----------~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~ 391 (752)
....+++.+|||||+ +++++++++. +|++|||||||+|+|+.....++. ++..+...|.+|+|+||+.
T Consensus 942 ~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~-~l~~l~~~g~~i~iisH~~ 1020 (1042)
T TIGR00618 942 TGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIG-ILDAIREGSKMIGIISHVP 1020 (1042)
T ss_pred CCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCcH
Confidence 355678999999999 7888877653 799999999999999999999998 5566777788999999999
Q ss_pred hHHh-hhccccccc
Q 004463 392 DLSC-LKDKDTRFE 404 (752)
Q Consensus 392 ~l~~-~a~~~~~i~ 404 (752)
++.. +++++.++.
T Consensus 1021 ~~~~~~~~~i~v~~ 1034 (1042)
T TIGR00618 1021 EFRERIPHRILVKK 1034 (1042)
T ss_pred HHHHhhCCEEEEEE
Confidence 8665 677766654
No 449
>PRK10869 recombination and repair protein; Provisional
Probab=98.55 E-value=2.9e-07 Score=107.46 Aligned_cols=114 Identities=15% Similarity=0.205 Sum_probs=81.5
Q ss_pred ccchHHHH-HHHHHHHccC----CCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccccc
Q 004463 330 STFSGHIS-RIVDILELVS----RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 404 (752)
Q Consensus 330 stlSgg~k-rl~~i~~la~----~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~ 404 (752)
..+|||++ |+++++.++. +|+++|||||++|+|+.....++. ++..+.+ +.+||++||++.+..+|++++.+.
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~-~l~~l~~-~~qvi~iTH~~~~~~~ad~~~~v~ 506 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGK-LLRQLGE-STQVMCVTHLPQVAGCGHQHFFVS 506 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHhc-CCEEEEEecCHHHHHhCCEEEEEe
Confidence 37899999 8999987775 689999999999999999999998 5566654 689999999999889999888876
Q ss_pred CCceeeccCccccchhhccCCCCCchHHHHHHHcCC---CHHHHHHHHHH
Q 004463 405 NAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGF---DRKIIQRAQKL 451 (752)
Q Consensus 405 ~g~v~~~~~~l~~~Y~l~~g~~~~s~a~~ia~~~g~---p~~ii~~A~~~ 451 (752)
.+.. .. .+|.-..-..+...-.+||+++|= .+..+..|++.
T Consensus 507 k~~~--~~----~t~s~i~~L~~~~R~~EiARMl~G~~~t~~~~~~A~eL 550 (553)
T PRK10869 507 KETD--GG----MTETHMQPLDKKARLQELARLLGGSEVTRNTLANAKEL 550 (553)
T ss_pred cccc--CC----eeeEEEEECChhHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 5431 11 111111112334456788998842 34445555554
No 450
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.49 E-value=1.6e-07 Score=110.02 Aligned_cols=88 Identities=23% Similarity=0.263 Sum_probs=69.1
Q ss_pred HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHcc----------CCCcEEEEeCCC-CCCChHhHHHHHHHHHHHHhc
Q 004463 312 FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV----------SRESLVLIDEIG-SGTDPSEGVALATSILQYLRD 379 (752)
Q Consensus 312 ~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la----------~~~~LlLLDEp~-~glD~~~~~~L~~all~~l~~ 379 (752)
++..+...|.. ...+.+|||||+ |++++++++ .+|+++|||||| +++|+.....+.. ++..+
T Consensus 452 ~~~~~~~~g~~---~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~-~l~~~-- 525 (562)
T PHA02562 452 FNETIKSRGRE---DFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLS-ILDSL-- 525 (562)
T ss_pred hhhHHhcCCCC---ccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHH-HHHhC--
Confidence 33444444542 336789999999 888887765 589999999998 7899999999988 55555
Q ss_pred CCcEEEEEecchhHHhhhcccccccC
Q 004463 380 RVGLAVVTTHYADLSCLKDKDTRFEN 405 (752)
Q Consensus 380 ~~~tviitTH~~~l~~~a~~~~~i~~ 405 (752)
.+.++|++||+.++...+++++.+.+
T Consensus 526 ~~~~iiiish~~~~~~~~d~~~~l~~ 551 (562)
T PHA02562 526 KDTNVFVISHKDHDPQKFDRHLKMEK 551 (562)
T ss_pred CCCeEEEEECchhchhhhhcEEEEEE
Confidence 47899999999888788888877765
No 451
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.48 E-value=1.8e-06 Score=97.64 Aligned_cols=141 Identities=16% Similarity=0.097 Sum_probs=91.3
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCc-----hHHHHHH-HHcCCchhhhcC----
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRL-----PWFDLIL-ADIGDHQSLEQN---- 328 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l-----~~~d~i~-~~ig~~~~i~~~---- 328 (752)
++ +.+.+| ++++|+||||+||||||+++ +|...|..+...+ .-+..++ ..++.. .+.+.
T Consensus 151 ~l-~~i~~G-q~i~I~G~sG~GKStLl~~I--------~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~-~l~r~v~vv 219 (438)
T PRK07721 151 SL-LTVGKG-QRVGIFAGSGVGKSTLMGMI--------ARNTSADLNVIALIGERGREVREFIERDLGPE-GLKRSIVVV 219 (438)
T ss_pred ee-eeecCC-cEEEEECCCCCCHHHHHHHH--------hcccCCCeEEEEEEecCCccHHHHHHhhcChh-hhcCeEEEE
Confidence 55 999999 89999999999999999999 5544443321000 0011111 112211 12221
Q ss_pred -cccchHHHH-HHHHH-HH------ccCCCcEEEEe-----------------CC--CCCCChHhHHHHHHHHHHHHhc-
Q 004463 329 -LSTFSGHIS-RIVDI-LE------LVSRESLVLID-----------------EI--GSGTDPSEGVALATSILQYLRD- 379 (752)
Q Consensus 329 -~stlSgg~k-rl~~i-~~------la~~~~LlLLD-----------------Ep--~~glD~~~~~~L~~all~~l~~- 379 (752)
.+.-|..++ +...+ .+ --...=||++| || ++|+||.....+.. +++.+..
T Consensus 220 ~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~-ller~~~~ 298 (438)
T PRK07721 220 ATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPK-LLERTGTN 298 (438)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHH-HHHHhcCC
Confidence 233344555 32221 11 12455578888 75 78999999988888 7776763
Q ss_pred -CCc-----EEEEEecchhHHhhhcccccccCCceeecc
Q 004463 380 -RVG-----LAVVTTHYADLSCLKDKDTRFENAATEFSL 412 (752)
Q Consensus 380 -~~~-----tviitTH~~~l~~~a~~~~~i~~g~v~~~~ 412 (752)
.|. ||++.|||++ ..+|++...+.+|++.++.
T Consensus 299 ~~GsIT~~~TVlv~~hdm~-e~i~d~v~~i~dG~Ivls~ 336 (438)
T PRK07721 299 ASGSITAFYTVLVDGDDMN-EPIADTVRGILDGHFVLDR 336 (438)
T ss_pred CCCCeeeEEEEEEECCCCC-chhhhhEEEecCEEEEEec
Confidence 564 8999999988 4789999999999998874
No 452
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.48 E-value=1e-06 Score=91.63 Aligned_cols=125 Identities=15% Similarity=0.176 Sum_probs=73.9
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHHhhhh-hhhhceeecCCCCCCchHHHHHHHHcCC--chhhhc-----------Cc
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGD--HQSLEQ-----------NL 329 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~-~aq~G~~vP~~~~~~l~~~d~i~~~ig~--~~~i~~-----------~~ 329 (752)
+++| .+++|+||+|+|||||...+..-.+ ....++|+..+.. .-.+..+ +..+|. .+.+.. ..
T Consensus 22 ~~~g-~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~-~~~~~~~-~~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 22 IPFP-SLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT-SKSYLKQ-MESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CcCC-cEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC-HHHHHHH-HHHCCCChhHHHhCCCceEEecccccc
Confidence 4677 8999999999999999999832221 2445567766542 1222222 233332 111111 11
Q ss_pred ccchHHHH-HHHHHHHcc--CCCcEEEEeCCCCCCC---hHhHHHHHHHHHHHHhcCCcEEEEEecchh
Q 004463 330 STFSGHIS-RIVDILELV--SRESLVLIDEIGSGTD---PSEGVALATSILQYLRDRVGLAVVTTHYAD 392 (752)
Q Consensus 330 stlSgg~k-rl~~i~~la--~~~~LlLLDEp~~glD---~~~~~~L~~all~~l~~~~~tviitTH~~~ 392 (752)
+..+.++. .+..+...+ .+|+++++|||++.+| +.....+.. .+..+.+.++|+++++|...
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~-~l~~l~~~g~tvllt~~~~~ 166 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLT-EAKNLVDLGKTILITLHPYA 166 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCc
Confidence 22344444 444444444 3899999999996544 433333333 34455667889999999754
No 453
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.44 E-value=2.8e-06 Score=78.33 Aligned_cols=116 Identities=20% Similarity=0.217 Sum_probs=64.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhhhhh-hceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHcc
Q 004463 269 RVVVITGPNTGGKTASMKTLGLASLMSK-AGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV 346 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iGli~~~aq-~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la 346 (752)
..++|+||+|+||||+++.+........ ...++..+.......+... ...........++... +.....+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALARK 76 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------hhhhhccCCCCCHHHHHHHHHHHHHh
Confidence 5799999999999999999922211111 1122222221111111111 1112222233344444 444444444
Q ss_pred CCCcEEEEeCCCCCCChHhHHHHHH-----HHHHHHhcCCcEEEEEecc
Q 004463 347 SRESLVLIDEIGSGTDPSEGVALAT-----SILQYLRDRVGLAVVTTHY 390 (752)
Q Consensus 347 ~~~~LlLLDEp~~glD~~~~~~L~~-----all~~l~~~~~tviitTH~ 390 (752)
..+.+|++||+..-.+......... .........+..+|+++|.
T Consensus 77 ~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 77 LKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 5579999999999999987765543 1233334446788888884
No 454
>PRK03918 chromosome segregation protein; Provisional
Probab=98.43 E-value=3.7e-07 Score=112.58 Aligned_cols=78 Identities=19% Similarity=0.190 Sum_probs=63.9
Q ss_pred hcCcccchHHHH-HHHHH------HHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhc
Q 004463 326 EQNLSTFSGHIS-RIVDI------LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKD 398 (752)
Q Consensus 326 ~~~~stlSgg~k-rl~~i------~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~ 398 (752)
..++.+||||++ +++++ ++++.+|+++||||||+|+|+.....+...+.. +...+.++|++||+.++..+|+
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~-~~~~~~~iiiith~~~~~~~~d 861 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMER-YLRKIPQVIIVSHDEELKDAAD 861 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHH-HHhcCCEEEEEECCHHHHHhCC
Confidence 457789999998 55443 356789999999999999999999999985544 5555789999999999888898
Q ss_pred cccccc
Q 004463 399 KDTRFE 404 (752)
Q Consensus 399 ~~~~i~ 404 (752)
+++.+.
T Consensus 862 ~~~~l~ 867 (880)
T PRK03918 862 YVIRVS 867 (880)
T ss_pred eEEEEE
Confidence 887765
No 455
>PRK01156 chromosome segregation protein; Provisional
Probab=98.42 E-value=6.8e-07 Score=110.54 Aligned_cols=78 Identities=19% Similarity=0.212 Sum_probs=64.0
Q ss_pred cCcccchHHHH-HHHHH------HHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCC--cEEEEEecchhHHhhh
Q 004463 327 QNLSTFSGHIS-RIVDI------LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV--GLAVVTTHYADLSCLK 397 (752)
Q Consensus 327 ~~~stlSgg~k-rl~~i------~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~--~tviitTH~~~l~~~a 397 (752)
.++..||||++ +++++ ++++.+|++++|||||+|||+.....+...+...+...+ .++|++||++++..+|
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~ 876 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVA 876 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhc
Confidence 56889999998 66543 567889999999999999999999998885544455543 3899999999988899
Q ss_pred ccccccc
Q 004463 398 DKDTRFE 404 (752)
Q Consensus 398 ~~~~~i~ 404 (752)
++++.+.
T Consensus 877 d~ii~~~ 883 (895)
T PRK01156 877 DVAYEVK 883 (895)
T ss_pred CeEEEEE
Confidence 9888765
No 456
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.37 E-value=7.8e-07 Score=100.04 Aligned_cols=152 Identities=10% Similarity=0.081 Sum_probs=88.8
Q ss_pred ccccccC--CeeEeeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhhhhce--eecCCCCCCc-hHHHHHHHHcCC
Q 004463 248 SLSKGIS--DFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGL--YLPAKNHPRL-PWFDLILADIGD 321 (752)
Q Consensus 248 ~ls~~y~--~~~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~aq~G~--~vP~~~~~~l-~~~d~i~~~ig~ 321 (752)
.++..|. -+.++..+.+..| +.++|+||||+|||||++++ +..... .|. .+...+ .++ .++...+..-|+
T Consensus 135 ~i~~~l~TGiraID~ll~I~~G-qri~I~G~sG~GKTtLl~~Ia~~~~~~--~gvI~~iGerg-~ev~e~~~~~l~~~gl 210 (432)
T PRK06793 135 EITDVFETGIKSIDSMLTIGIG-QKIGIFAGSGVGKSTLLGMIAKNAKAD--INVISLVGERG-REVKDFIRKELGEEGM 210 (432)
T ss_pred chhhccCCCCEEEeccceecCC-cEEEEECCCCCChHHHHHHHhccCCCC--eEEEEeCCCCc-ccHHHHHHHHhhhccc
Confidence 3444443 2345667999999 89999999999999999999 222111 111 111111 111 122223322222
Q ss_pred chh-hhcCcccchHHHH-HHHHHHHcc-------CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh
Q 004463 322 HQS-LEQNLSTFSGHIS-RIVDILELV-------SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 392 (752)
Q Consensus 322 ~~~-i~~~~stlSgg~k-rl~~i~~la-------~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~ 392 (752)
... +-...+.-|.+++ +...+.... ..+-||++|+||++.|+. ..+.. .+...-..|-+..+.||...
T Consensus 211 ~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl-~~~e~p~~G~~~~~~s~l~~ 287 (432)
T PRK06793 211 RKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDI-AVKELPIGGKTLLMESYMKK 287 (432)
T ss_pred ceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHH-HhcCCCCCCeeeeeeccchh
Confidence 211 2345577888998 665553332 688999999999999996 44443 33333334667777788544
Q ss_pred HHhhhcccccccCCcee
Q 004463 393 LSCLKDKDTRFENAATE 409 (752)
Q Consensus 393 l~~~a~~~~~i~~g~v~ 409 (752)
+.+-+. ....|++.
T Consensus 288 L~ERag---~~~~GSiT 301 (432)
T PRK06793 288 LLERSG---KTQKGSIT 301 (432)
T ss_pred HHHHhc---cCCCcceE
Confidence 444333 34567663
No 457
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.34 E-value=2.7e-07 Score=100.22 Aligned_cols=125 Identities=10% Similarity=0.108 Sum_probs=69.6
Q ss_pred eeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHH-cCCchhhh---c----Cccc
Q 004463 260 IDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILAD-IGDHQSLE---Q----NLST 331 (752)
Q Consensus 260 idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~-ig~~~~i~---~----~~st 331 (752)
+++.+..| ..++|+|||||||||||+++ ++.+.|..+. +. ++..... +.....+. . ....
T Consensus 137 l~~~v~~~-~~ili~G~tGsGKTTll~al--------~~~~~~~~~i--v~-ied~~El~~~~~~~~~l~~~~~~~~~~~ 204 (308)
T TIGR02788 137 LRLAIASR-KNIIISGGTGSGKTTFLKSL--------VDEIPKDERI--IT-IEDTREIFLPHPNYVHLFYSKGGQGLAK 204 (308)
T ss_pred HHHHhhCC-CEEEEECCCCCCHHHHHHHH--------HccCCccccE--EE-EcCccccCCCCCCEEEEEecCCCCCcCc
Confidence 34556677 89999999999999999999 6654333321 11 1111100 00000000 0 0011
Q ss_pred chHHHHHHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCc
Q 004463 332 FSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAA 407 (752)
Q Consensus 332 lSgg~krl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~ 407 (752)
++- . -.+..++..+|+++++|||.. ...+. +++.+......++.|+|..+.....++...+..++
T Consensus 205 ~~~--~-~~l~~~Lr~~pd~ii~gE~r~-------~e~~~-~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~ 269 (308)
T TIGR02788 205 VTP--K-DLLQSCLRMRPDRIILGELRG-------DEAFD-FIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSS 269 (308)
T ss_pred cCH--H-HHHHHHhcCCCCeEEEeccCC-------HHHHH-HHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhcc
Confidence 111 1 122245678999999999995 12222 45555532335699999988776666666554443
No 458
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.34 E-value=6.9e-07 Score=90.87 Aligned_cols=117 Identities=16% Similarity=0.186 Sum_probs=60.3
Q ss_pred EEEEEcCCCCCHHHHHHHH-HhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHHHHHHHHHccCC
Q 004463 270 VVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSR 348 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i-Gli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~krl~~i~~la~~ 348 (752)
+++|+||+||||||+++.+ +.+... ..+..+--+....+. .......+. ...+.....+|+.. +..++..+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~-~~~~i~t~e~~~E~~-~~~~~~~i~-q~~vg~~~~~~~~~-----i~~aLr~~ 74 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKN-KTHHILTIEDPIEFV-HESKRSLIN-QREVGLDTLSFENA-----LKAALRQD 74 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc-CCcEEEEEcCCcccc-ccCccceee-ecccCCCccCHHHH-----HHHHhcCC
Confidence 7899999999999999987 222110 011111111101110 000000000 00011112234322 23455678
Q ss_pred CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccccc
Q 004463 349 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTR 402 (752)
Q Consensus 349 ~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~ 402 (752)
|+++++|||. |+..... +++ ....|..++.|+|..+.....++...
T Consensus 75 pd~ii~gEir---d~e~~~~----~l~-~a~~G~~v~~t~Ha~~~~~~~~Rl~~ 120 (198)
T cd01131 75 PDVILVGEMR---DLETIRL----ALT-AAETGHLVMSTLHTNSAAKTIDRIID 120 (198)
T ss_pred cCEEEEcCCC---CHHHHHH----HHH-HHHcCCEEEEEecCCcHHHHHhHHHh
Confidence 9999999995 5554322 333 33458899999999876555555543
No 459
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.32 E-value=9.6e-07 Score=110.48 Aligned_cols=70 Identities=20% Similarity=0.078 Sum_probs=61.4
Q ss_pred hhcCcccchHHHH-HHHHHHHccC--------CCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHh
Q 004463 325 LEQNLSTFSGHIS-RIVDILELVS--------RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC 395 (752)
Q Consensus 325 i~~~~stlSgg~k-rl~~i~~la~--------~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~ 395 (752)
..+++.+||||++ +++++++++. +|++|||||||++||+.....+.. ++..+.+.|.+|+|+||..+++.
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~-~l~~l~~~g~~v~iisH~~~l~~ 1021 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALD-ALDALNASGKTIGVISHVEAMKE 1021 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHCCCEEEEEecHHHHHH
Confidence 3578999999999 7888888774 899999999999999999999998 67778888999999999877765
No 460
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.30 E-value=9.7e-07 Score=90.44 Aligned_cols=40 Identities=18% Similarity=0.066 Sum_probs=34.0
Q ss_pred HHHHHHHccCCCcEEEEeCCC-----CCCChHhHHHHHHHHHHHHh
Q 004463 338 RIVDILELVSRESLVLIDEIG-----SGTDPSEGVALATSILQYLR 378 (752)
Q Consensus 338 rl~~i~~la~~~~LlLLDEp~-----~glD~~~~~~L~~all~~l~ 378 (752)
...+++.++.+|+++++|||| +|+||.....+.. ++..++
T Consensus 160 f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~-~~~~~~ 204 (215)
T PTZ00132 160 FLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEK-ELQAAA 204 (215)
T ss_pred HHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHH-HHHHHh
Confidence 567788899999999999999 9999999999888 444443
No 461
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.24 E-value=1.4e-06 Score=110.17 Aligned_cols=77 Identities=22% Similarity=0.204 Sum_probs=63.6
Q ss_pred hhcCcccchHHHH-HHHHHHHc----cCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcc
Q 004463 325 LEQNLSTFSGHIS-RIVDILEL----VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDK 399 (752)
Q Consensus 325 i~~~~stlSgg~k-rl~~i~~l----a~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~ 399 (752)
.+..+..||||++ ++++++++ +.+|+|+|||||++|+|+.....+.. ++..+.. +.++||+||++.+..+|++
T Consensus 1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~-~~~~~~~-~~~~i~~sh~~~~~~~~d~ 1160 (1179)
T TIGR02168 1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFAN-LLKEFSK-NTQFIVITHNKGTMEVADQ 1160 (1179)
T ss_pred ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHH-HHHHhcc-CCEEEEEEcChhHHHHhhh
Confidence 3467789999999 77777765 57889999999999999999999988 5555554 4789999999998788988
Q ss_pred cccc
Q 004463 400 DTRF 403 (752)
Q Consensus 400 ~~~i 403 (752)
++.+
T Consensus 1161 ~~~~ 1164 (1179)
T TIGR02168 1161 LYGV 1164 (1179)
T ss_pred Heee
Confidence 7654
No 462
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.23 E-value=1.3e-05 Score=101.66 Aligned_cols=76 Identities=13% Similarity=0.077 Sum_probs=62.2
Q ss_pred cCcccchHHHH-HHHHHHHcc----CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccc
Q 004463 327 QNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDT 401 (752)
Q Consensus 327 ~~~stlSgg~k-rl~~i~~la----~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~ 401 (752)
..+..||||++ ++++++.++ .+|+++|||||++|+|+.....+.. ++..+.. ++.+|++||+..+..+||+.+
T Consensus 1070 ~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~-~l~~~~~-~~~~i~~t~~~~~~~~~d~~~ 1147 (1164)
T TIGR02169 1070 QRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAK-LIREKAG-EAQFIVVSLRSPMIEYADRAI 1147 (1164)
T ss_pred CcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHH-HHHHhcC-CCeEEEEECcHHHHHhcceeE
Confidence 45678999999 677776665 5889999999999999999999988 5555554 478999999988778898887
Q ss_pred ccc
Q 004463 402 RFE 404 (752)
Q Consensus 402 ~i~ 404 (752)
.+.
T Consensus 1148 ~~~ 1150 (1164)
T TIGR02169 1148 GVT 1150 (1164)
T ss_pred eEE
Confidence 654
No 463
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.21 E-value=3.3e-06 Score=108.23 Aligned_cols=76 Identities=16% Similarity=0.129 Sum_probs=60.5
Q ss_pred hhhhcCcccchHHHHH-------HHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHh----cCCcEEEEEecch
Q 004463 323 QSLEQNLSTFSGHISR-------IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR----DRVGLAVVTTHYA 391 (752)
Q Consensus 323 ~~i~~~~stlSgg~kr-------l~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~----~~~~tviitTH~~ 391 (752)
+......+.||+|+++ ++++++++.+|.+|+|||||+|||+.....|+..+...+. ..|.++|++||++
T Consensus 1191 ~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~ 1270 (1311)
T TIGR00606 1191 DTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDE 1270 (1311)
T ss_pred CeecCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCH
Confidence 3434455789999985 7788899999999999999999999999999886666543 2378999999998
Q ss_pred hH-Hhhhc
Q 004463 392 DL-SCLKD 398 (752)
Q Consensus 392 ~l-~~~a~ 398 (752)
++ ..+|.
T Consensus 1271 ~~~~~~~~ 1278 (1311)
T TIGR00606 1271 DFVELLGR 1278 (1311)
T ss_pred HHHHHHhh
Confidence 84 44553
No 464
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.12 E-value=7.8e-05 Score=89.18 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=32.1
Q ss_pred EEEcccccccCCeeEeeeEEEccCceEEEEEcCCCCCHHHHHHHHH
Q 004463 244 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLG 289 (752)
Q Consensus 244 l~~~~ls~~y~~~~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~iG 289 (752)
|.+.|+...+|.. .++|....+..+++|+||||+||||+|+++-
T Consensus 6 l~l~nf~~~~~~~--~~~~~~~~~~~~~~i~G~Ng~GKttll~ai~ 49 (650)
T TIGR03185 6 LTLENFGPYRGRQ--TFDLSPSSPKPIILIGGLNGAGKTTLLDAIQ 49 (650)
T ss_pred EEEeceEEEcCCc--eeeeecCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4566666555432 4556666554599999999999999999993
No 465
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.08 E-value=5.2e-06 Score=102.81 Aligned_cols=79 Identities=24% Similarity=0.209 Sum_probs=65.4
Q ss_pred hcCcccchHHHH-HHHHHHHc------cCC--CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhh
Q 004463 326 EQNLSTFSGHIS-RIVDILEL------VSR--ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 396 (752)
Q Consensus 326 ~~~~stlSgg~k-rl~~i~~l------a~~--~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~ 396 (752)
.+++++||||++ .+++++++ ... =++++|||||..||+.....++. +++.+...+.+|+|+||+.++...
T Consensus 810 ~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~-~l~~i~~~~~qiiIISH~eel~e~ 888 (908)
T COG0419 810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAE-ILEELLSDGRQIIIISHVEELKER 888 (908)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHH-HHHHHHhcCCeEEEEeChHHHHHh
Confidence 478999999999 55555432 234 48999999999999999999999 667777778999999999999999
Q ss_pred hcccccccC
Q 004463 397 KDKDTRFEN 405 (752)
Q Consensus 397 a~~~~~i~~ 405 (752)
++..+.+..
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 988877653
No 466
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.03 E-value=7.7e-06 Score=86.18 Aligned_cols=73 Identities=11% Similarity=0.100 Sum_probs=54.5
Q ss_pred cchHHH--------H-HHHHHHHccCCCcEEEEeCCCCCCChHhHHH-HHHHHHHHHhcCCcEEEEEecchhHHhhhccc
Q 004463 331 TFSGHI--------S-RIVDILELVSRESLVLIDEIGSGTDPSEGVA-LATSILQYLRDRVGLAVVTTHYADLSCLKDKD 400 (752)
Q Consensus 331 tlSgg~--------k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~-L~~all~~l~~~~~tviitTH~~~l~~~a~~~ 400 (752)
.+|||+ + ++..+++...++++.+| +|+.+|+.+-.. + +++.+...+.+.|+.||.+......+.+
T Consensus 129 ~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~---i~~~~~~~~~~~ivls~~la~~~~~paI 203 (249)
T cd01128 129 ILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDV---IFEEFKGTGNMELVLDRRLAERRIFPAI 203 (249)
T ss_pred CCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccch---HHHHHhcCCCcEEEEchHHhhCCCCCeE
Confidence 457777 4 78888877789999999 999999644332 3 2466665678999999998877777777
Q ss_pred ccccCCce
Q 004463 401 TRFENAAT 408 (752)
Q Consensus 401 ~~i~~g~v 408 (752)
..+..|+.
T Consensus 204 ~vl~s~sr 211 (249)
T cd01128 204 DILKSGTR 211 (249)
T ss_pred EEcCCCCc
Confidence 77777664
No 467
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.97 E-value=1.6e-05 Score=83.12 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=35.8
Q ss_pred cCCCcEEEEeCCCC------CCChHhHHHHHHHHHHHHhcCCcEEEEEecchh
Q 004463 346 VSRESLVLIDEIGS------GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 392 (752)
Q Consensus 346 a~~~~LlLLDEp~~------glD~~~~~~L~~all~~l~~~~~tviitTH~~~ 392 (752)
..+|++|++| |.+ ..|+.....+...+.+...+.++++|+++|...
T Consensus 109 ~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 109 IRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred hcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 5799999999 654 468888888887565554566899999999853
No 468
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.94 E-value=6.2e-05 Score=70.11 Aligned_cols=106 Identities=22% Similarity=0.252 Sum_probs=57.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhh-hhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHHHHHHHHHccC
Q 004463 269 RVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVS 347 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iGli~~-~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~krl~~i~~la~ 347 (752)
..+.|+||.|+||||+++.+.-... ....-.++....... .. ......+.. ............
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~-~~--~~~~~~~~~-------------~~~~~~~~~~~~ 83 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLE-GL--VVAELFGHF-------------LVRLLFELAEKA 83 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhh-hh--HHHHHhhhh-------------hHhHHHHhhccC
Confidence 6899999999999999999922111 000011111111000 00 000000000 122333445567
Q ss_pred CCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc-----CCcEEEEEecchh
Q 004463 348 RESLVLIDEIGSGTDPSEGVALATSILQYLRD-----RVGLAVVTTHYAD 392 (752)
Q Consensus 348 ~~~LlLLDEp~~glD~~~~~~L~~all~~l~~-----~~~tviitTH~~~ 392 (752)
.+.+|++||.-.. ++.....+.. ++..+.. .+.++|++|+...
T Consensus 84 ~~~~lilDe~~~~-~~~~~~~~~~-~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 84 KPGVLFIDEIDSL-SRGAQNALLR-VLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred CCeEEEEeChhhh-hHHHHHHHHH-HHHhcCceeccCCCeEEEEecCccc
Confidence 8899999998876 4555556665 3444432 4678888988754
No 469
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.93 E-value=4.1e-05 Score=93.62 Aligned_cols=63 Identities=21% Similarity=0.129 Sum_probs=48.2
Q ss_pred ccCCCcEEEEeCCCCCC-ChHhHHHHHHHHHHHHhcCCcEEEEEecchhHH----------hhhcccccccCCce
Q 004463 345 LVSRESLVLIDEIGSGT-DPSEGVALATSILQYLRDRVGLAVVTTHYADLS----------CLKDKDTRFENAAT 408 (752)
Q Consensus 345 la~~~~LlLLDEp~~gl-D~~~~~~L~~all~~l~~~~~tviitTH~~~l~----------~~a~~~~~i~~g~v 408 (752)
+..+|.++++|||..++ ||.....+.. ++..+++.|++++++||+++.. ..|+..+.+.|+.+
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~-~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a 722 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIRE-WLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAA 722 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccc
Confidence 36799999999999999 6887777776 6666778899999999998633 24555555656544
No 470
>PRK02224 chromosome segregation protein; Provisional
Probab=97.89 E-value=1.8e-05 Score=97.80 Aligned_cols=77 Identities=19% Similarity=0.109 Sum_probs=58.9
Q ss_pred cCcccchHHHHH-HH------HHHHccC-----C-CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCc-EEEEEecchh
Q 004463 327 QNLSTFSGHISR-IV------DILELVS-----R-ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG-LAVVTTHYAD 392 (752)
Q Consensus 327 ~~~stlSgg~kr-l~------~i~~la~-----~-~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~-tviitTH~~~ 392 (752)
..+..||||+++ ++ ++..++. + +.++||||||+++|+.....+.. ++..+...|. +||++||+.+
T Consensus 777 ~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~-~l~~~~~~~~~qviiish~~~ 855 (880)
T PRK02224 777 LEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVD-LVESMRRLGVEQIVVVSHDDE 855 (880)
T ss_pred cChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHH-HHHHHHhcCCCeEEEEECChH
Confidence 356799999984 33 2233343 2 26799999999999999999987 6666766554 7999999999
Q ss_pred HHhhhccccccc
Q 004463 393 LSCLKDKDTRFE 404 (752)
Q Consensus 393 l~~~a~~~~~i~ 404 (752)
+...|++++.+.
T Consensus 856 ~~~~ad~~~~~~ 867 (880)
T PRK02224 856 LVGAADDLVRVE 867 (880)
T ss_pred HHHhcCeeEEee
Confidence 878899887774
No 471
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.87 E-value=1.2e-05 Score=81.36 Aligned_cols=90 Identities=16% Similarity=0.186 Sum_probs=55.2
Q ss_pred EEEEEcCCCCCHHHHHHHH-HhhhhhhhhceeecCCCC----------------------CCchHHHHHHHHcCCchhhh
Q 004463 270 VVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNH----------------------PRLPWFDLILADIGDHQSLE 326 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i-Gli~~~aq~G~~vP~~~~----------------------~~l~~~d~i~~~ig~~~~i~ 326 (752)
+++|+||+|||||||++++ +++. ......++.+.. ..+..+...+..+.....+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~--~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 78 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG--NPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVE 78 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--CCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEe
Confidence 4799999999999999999 4431 000111121110 01112333445555555566
Q ss_pred cCcccchHHHHHHHHHHHccCCCcEEEEeCCCCCCCh
Q 004463 327 QNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDP 363 (752)
Q Consensus 327 ~~~stlSgg~krl~~i~~la~~~~LlLLDEp~~glD~ 363 (752)
.+...+|.|+.....+ .+.+++++|+|.|+.+.++
T Consensus 79 ~p~~d~~~~~~~~~~~--~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 79 IPVYDFKTHSRLKETV--TVYPADVIILEGILALYDK 113 (198)
T ss_pred ccccccccCcccCCce--ecCCCCEEEEechhhccch
Confidence 6677777776522111 4678899999999999987
No 472
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.86 E-value=2e-05 Score=86.94 Aligned_cols=50 Identities=18% Similarity=0.090 Sum_probs=34.1
Q ss_pred HHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccc
Q 004463 343 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKD 400 (752)
Q Consensus 343 ~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~ 400 (752)
.++-.+|+++++||+. |+........ ....|.+++.|+|-.+.....++.
T Consensus 190 ~~lr~~pd~i~vgEir---d~~~~~~~l~-----aa~tGh~v~~T~Ha~~~~~~~~Rl 239 (343)
T TIGR01420 190 AALREDPDVILIGEMR---DLETVELALT-----AAETGHLVFGTLHTNSAAQTIERI 239 (343)
T ss_pred HhhccCCCEEEEeCCC---CHHHHHHHHH-----HHHcCCcEEEEEcCCCHHHHHHHH
Confidence 4456899999999996 7766544333 234588899999986644433433
No 473
>COG4637 Predicted ATPase [General function prediction only]
Probab=97.86 E-value=0.00013 Score=77.85 Aligned_cols=65 Identities=25% Similarity=0.253 Sum_probs=49.3
Q ss_pred cchHHHHH-HHHHHHcc--CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhh
Q 004463 331 TFSGHISR-IVDILELV--SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLK 397 (752)
Q Consensus 331 tlSgg~kr-l~~i~~la--~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a 397 (752)
.||-|..| ++++.++. ..|.+++||||-.+|-|..--+|+. ++....+. .-||++||...+.+..
T Consensus 270 eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~-~~~sAak~-sQv~VsTHS~rLl~~~ 337 (373)
T COG4637 270 ELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAE-LMRSAAKR-SQVIVSTHSPRLLNAV 337 (373)
T ss_pred hccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHH-HHHHhhcc-ceEEEEeCCHHHHhhc
Confidence 78888776 55554443 4778999999999999999999988 44444443 3899999998876643
No 474
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=97.84 E-value=4.6e-05 Score=89.61 Aligned_cols=88 Identities=25% Similarity=0.252 Sum_probs=72.5
Q ss_pred HHHcCCc-hhhhcCcccchHHHH-HHHHHHHcc--CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecch
Q 004463 316 LADIGDH-QSLEQNLSTFSGHIS-RIVDILELV--SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 391 (752)
Q Consensus 316 ~~~ig~~-~~i~~~~stlSgg~k-rl~~i~~la--~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~ 391 (752)
+.++|++ -.+++...|||||+. |+.+|..+- --.=|.+||||.-||-+.+-..|.. .+..|++.|.|+|+|.||.
T Consensus 465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~-tL~~LRDlGNTviVVEHDe 543 (935)
T COG0178 465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIE-TLKRLRDLGNTVIVVEHDE 543 (935)
T ss_pred HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHH-HHHHHHhcCCeEEEEecCH
Confidence 3445554 357889999999998 888886542 2346899999999999999999998 7788999999999999999
Q ss_pred hHHhhhccccccc
Q 004463 392 DLSCLKDKDTRFE 404 (752)
Q Consensus 392 ~l~~~a~~~~~i~ 404 (752)
+....||+++-+.
T Consensus 544 dti~~AD~iIDiG 556 (935)
T COG0178 544 DTIRAADHIIDIG 556 (935)
T ss_pred HHHhhcCEEEeeC
Confidence 9888999887653
No 475
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.82 E-value=0.00017 Score=74.73 Aligned_cols=126 Identities=17% Similarity=0.162 Sum_probs=68.3
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHHhhhh-hhhhceeecCCCCCCchHHHHHHHHcCCc-------------hhh----
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGDH-------------QSL---- 325 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~-~aq~G~~vP~~~~~~l~~~d~i~~~ig~~-------------~~i---- 325 (752)
+++| ++++|.||+|+|||||...+..-.+ ....++|+..+... .-+-.....+|.. +.+
T Consensus 17 i~~G-~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~--~~i~~~~~~~g~~~~~~~~~~~l~i~d~~~~~~ 93 (229)
T TIGR03881 17 IPRG-FFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESR--ESIIRQAAQFGMDFEKAIEEGKLVIIDALMKEK 93 (229)
T ss_pred CcCC-eEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCH--HHHHHHHHHhCCCHHHHhhcCCEEEEEcccccc
Confidence 4678 8999999999999999987732111 12334555443311 1111112222211 000
Q ss_pred --hcCcccchHHHH--HHHHHHHcc-CCCcEEEEeCCCCCC--ChHhHHHHHHHHHHHHhcCCcEEEEEecchh
Q 004463 326 --EQNLSTFSGHIS--RIVDILELV-SRESLVLIDEIGSGT--DPSEGVALATSILQYLRDRVGLAVVTTHYAD 392 (752)
Q Consensus 326 --~~~~stlSgg~k--rl~~i~~la-~~~~LlLLDEp~~gl--D~~~~~~L~~all~~l~~~~~tviitTH~~~ 392 (752)
...+..++-.+. ++..+.... ..+.++++|-|+.-+ +|.....+...+...+.+.++|+|+++|...
T Consensus 94 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~ 167 (229)
T TIGR03881 94 EDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAI 167 (229)
T ss_pred ccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccc
Confidence 001122333332 333333222 256788888886543 4433445555577777888999999999643
No 476
>PRK09183 transposase/IS protein; Provisional
Probab=97.80 E-value=3.7e-05 Score=81.58 Aligned_cols=107 Identities=24% Similarity=0.332 Sum_probs=62.4
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhc---eeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHH
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAG---LYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGH 335 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G---~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg 335 (752)
.+++ +..| +.++|+||+|+|||+|+.++|..... .| .|++. ..++..+.... .. +
T Consensus 95 ~~~~-i~~~-~~v~l~Gp~GtGKThLa~al~~~a~~--~G~~v~~~~~---------~~l~~~l~~a~--~~------~- 152 (259)
T PRK09183 95 SLSF-IERN-ENIVLLGPSGVGKTHLAIALGYEAVR--AGIKVRFTTA---------ADLLLQLSTAQ--RQ------G- 152 (259)
T ss_pred cCCc-hhcC-CeEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeH---------HHHHHHHHHHH--HC------C-
Confidence 4455 6778 78999999999999999999654322 23 12221 11221111000 00 0
Q ss_pred HHHHHHH-HHccCCCcEEEEeCCCCC-CChHhHHHHHHHHHHHHhcCCcEEEEEecch
Q 004463 336 ISRIVDI-LELVSRESLVLIDEIGSG-TDPSEGVALATSILQYLRDRVGLAVVTTHYA 391 (752)
Q Consensus 336 ~krl~~i-~~la~~~~LlLLDEp~~g-lD~~~~~~L~~all~~l~~~~~tviitTH~~ 391 (752)
++..+ ......++++++||.+.. .+......|.. ++....+++ .+|+||+..
T Consensus 153 --~~~~~~~~~~~~~dlLiiDdlg~~~~~~~~~~~lf~-li~~r~~~~-s~iiTsn~~ 206 (259)
T PRK09183 153 --RYKTTLQRGVMAPRLLIIDEIGYLPFSQEEANLFFQ-VIAKRYEKG-SMILTSNLP 206 (259)
T ss_pred --cHHHHHHHHhcCCCEEEEcccccCCCChHHHHHHHH-HHHHHHhcC-cEEEecCCC
Confidence 11111 122468899999999864 55555555666 666555554 578888873
No 477
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.79 E-value=2.9e-05 Score=71.12 Aligned_cols=29 Identities=31% Similarity=0.231 Sum_probs=27.9
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
+++|.+.+| ++++|+||+|||||||++++
T Consensus 7 ~vsl~i~~g-e~v~I~GpSGsGKSTLl~~l 35 (107)
T cd00820 7 GVLVDVYGK-VGVLITGDSGIGKTELALEL 35 (107)
T ss_pred eeEEEEcCC-EEEEEEcCCCCCHHHHHHHh
Confidence 889999999 99999999999999999998
No 478
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.77 E-value=0.00029 Score=83.55 Aligned_cols=20 Identities=25% Similarity=0.484 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..++|+||||+||||+++++
T Consensus 176 ~~vlL~Gp~GtGKTTLAr~i 195 (615)
T TIGR02903 176 QHIILYGPPGVGKTTAARLA 195 (615)
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 479
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.74 E-value=0.00047 Score=76.80 Aligned_cols=46 Identities=13% Similarity=0.165 Sum_probs=37.3
Q ss_pred CeEEEcccccccCCe--------------eEeeeEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 242 SEMTVGSLSKGISDF--------------PVPIDIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~--------------~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
+.+.++||++.|++. .+++.+.+..| +.++|+||.|+|||||++.|
T Consensus 129 ~ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~G-q~~~IvG~~g~GKTtL~~~i 188 (415)
T TIGR00767 129 NRVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKG-QRGLIVAPPKAGKTVLLQKI 188 (415)
T ss_pred CCeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCC-CEEEEECCCCCChhHHHHHH
Confidence 345677788887542 22778888999 89999999999999999998
No 480
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.72 E-value=2.8e-05 Score=78.23 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=23.6
Q ss_pred eEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 261 DIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 261 dl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
.+.+..| ..++|+||||||||||++++
T Consensus 19 ~~~v~~g-~~i~I~G~tGSGKTTll~aL 45 (186)
T cd01130 19 WLAVEAR-KNILISGGTGSGKTTLLNAL 45 (186)
T ss_pred HHHHhCC-CEEEEECCCCCCHHHHHHHH
Confidence 3445677 89999999999999999999
No 481
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.72 E-value=0.00014 Score=83.26 Aligned_cols=92 Identities=20% Similarity=0.222 Sum_probs=53.1
Q ss_pred eeEEEccCceEEEEEcCCCCCHHHHHHHHH-hhhhhh--hhceeecCCCCCCchHHHHHH---HHcCCchhhhcCcccch
Q 004463 260 IDIKVECETRVVVITGPNTGGKTASMKTLG-LASLMS--KAGLYLPAKNHPRLPWFDLIL---ADIGDHQSLEQNLSTFS 333 (752)
Q Consensus 260 idl~l~~g~~~~~I~GpNGsGKSTlLK~iG-li~~~a--q~G~~vP~~~~~~l~~~d~i~---~~ig~~~~i~~~~stlS 333 (752)
.++.+..| .+++++||||+||||++..|+ .+.... ....+++++. ..++.++++- ..+|..-.... .
T Consensus 249 ~~~~~~~g-~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt-~RigA~EQLr~~AeilGVpv~~~~-----~ 321 (484)
T PRK06995 249 EDALLDRG-GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS-YRIGGHEQLRIYGKILGVPVHAVK-----D 321 (484)
T ss_pred ccccccCC-cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc-cchhHHHHHHHHHHHhCCCeeccC-----C
Confidence 44456677 899999999999999999994 332221 1223667665 4566666552 22232110000 0
Q ss_pred HHHHHHHHHHHccCCCcEEEEeCCCCC
Q 004463 334 GHISRIVDILELVSRESLVLIDEIGSG 360 (752)
Q Consensus 334 gg~krl~~i~~la~~~~LlLLDEp~~g 360 (752)
+ ..+...+..+.+.+++|+|.+|.+
T Consensus 322 -~-~Dl~~aL~~L~d~d~VLIDTaGr~ 346 (484)
T PRK06995 322 -A-ADLRLALSELRNKHIVLIDTIGMS 346 (484)
T ss_pred -c-hhHHHHHHhccCCCeEEeCCCCcC
Confidence 0 122333444556689999997644
No 482
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=0.00045 Score=77.91 Aligned_cols=90 Identities=20% Similarity=0.258 Sum_probs=53.5
Q ss_pred ccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh--hhhceeecCCCCCCchHHHHHH---HHcCCchhhhcCcccchHHHHH
Q 004463 265 ECETRVVVITGPNTGGKTASMKTL-GLASLM--SKAGLYLPAKNHPRLPWFDLIL---ADIGDHQSLEQNLSTFSGHISR 338 (752)
Q Consensus 265 ~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--aq~G~~vP~~~~~~l~~~d~i~---~~ig~~~~i~~~~stlSgg~kr 338 (752)
..| ++++|+||||+||||+++.+ |..... ...+.++..+. ..++.++++. ..+|..-. ...... .
T Consensus 189 ~~g-~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~-~rigalEQL~~~a~ilGvp~~------~v~~~~-d 259 (420)
T PRK14721 189 EQG-GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDS-YRIGGHEQLRIYGKLLGVSVR------SIKDIA-D 259 (420)
T ss_pred CCC-cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCC-cchhHHHHHHHHHHHcCCcee------cCCCHH-H
Confidence 567 89999999999999999988 332211 12334555554 5677777643 22332211 111111 2
Q ss_pred HHHHHHccCCCcEEEEeCCCCCCChHh
Q 004463 339 IVDILELVSRESLVLIDEIGSGTDPSE 365 (752)
Q Consensus 339 l~~i~~la~~~~LlLLDEp~~glD~~~ 365 (752)
+..++..+.+.+++|+|.+ |..+..
T Consensus 260 l~~al~~l~~~d~VLIDTa--Grsqrd 284 (420)
T PRK14721 260 LQLMLHELRGKHMVLIDTV--GMSQRD 284 (420)
T ss_pred HHHHHHHhcCCCEEEecCC--CCCcch
Confidence 3344445678899999975 555544
No 483
>PRK00064 recF recombination protein F; Reviewed
Probab=97.68 E-value=5.9e-05 Score=83.91 Aligned_cols=78 Identities=19% Similarity=0.147 Sum_probs=56.0
Q ss_pred cCcccchHHHH-HHHHHHHcc---------CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHh
Q 004463 327 QNLSTFSGHIS-RIVDILELV---------SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSC 395 (752)
Q Consensus 327 ~~~stlSgg~k-rl~~i~~la---------~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~ 395 (752)
.....+|.||+ ++.+++.++ .+|+++|||||+++||+.....+...+.+ .++.+++|||+.+ +..
T Consensus 269 ~~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~----~~~qv~it~~~~~~~~~ 344 (361)
T PRK00064 269 PAADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKG----LGAQVFITTTDLEDLAD 344 (361)
T ss_pred CHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhc----cCCEEEEEcCChhhhhh
Confidence 45578899999 566666654 79999999999999999998887763322 2568899999865 333
Q ss_pred hh--cccccccCCce
Q 004463 396 LK--DKDTRFENAAT 408 (752)
Q Consensus 396 ~a--~~~~~i~~g~v 408 (752)
++ .+.+.+.+|.+
T Consensus 345 ~~~~~~i~~v~~G~i 359 (361)
T PRK00064 345 LLENAKIFHVEQGKI 359 (361)
T ss_pred hhccCcEEEEeCCEE
Confidence 43 23455666554
No 484
>PRK04296 thymidine kinase; Provisional
Probab=97.68 E-value=0.00018 Score=72.74 Aligned_cols=130 Identities=18% Similarity=0.146 Sum_probs=68.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhhh-hhhc-eeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHHHHHHHHHcc
Q 004463 269 RVVVITGPNTGGKTASMKTLGLASLM-SKAG-LYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELV 346 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iGli~~~-aq~G-~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~krl~~i~~la 346 (752)
.+.+|+||.|+||||++..+..-... .+.. ++.|.-. .... ...+...+|..-.. ............+.. ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d-~~~~-~~~i~~~lg~~~~~-~~~~~~~~~~~~~~~---~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAID-DRYG-EGKVVSRIGLSREA-IPVSSDTDIFELIEE---EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecccc-cccc-CCcEecCCCCcccc-eEeCChHHHHHHHHh---hC
Confidence 68999999999999988766211111 1111 2323211 1111 22334444421100 001111111111211 34
Q ss_pred CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecc-----------hhHHhhhcccccccCCcee
Q 004463 347 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY-----------ADLSCLKDKDTRFENAATE 409 (752)
Q Consensus 347 ~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~-----------~~l~~~a~~~~~i~~g~v~ 409 (752)
.+.++|++||.-. ++.. .+.. +++.+...|.+||++.++ ..+..+||.+..+..-++.
T Consensus 77 ~~~dvviIDEaq~-l~~~---~v~~-l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~vC~~ 145 (190)
T PRK04296 77 EKIDCVLIDEAQF-LDKE---QVVQ-LAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKAICVH 145 (190)
T ss_pred CCCCEEEEEcccc-CCHH---HHHH-HHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEeeEEccc
Confidence 5779999999933 4432 2333 667777789999999999 2355678877766554443
No 485
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.64 E-value=4.1e-05 Score=88.41 Aligned_cols=124 Identities=15% Similarity=0.150 Sum_probs=68.5
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHHhhhhh--hhhceeecCCCCCCchHHHHHHHHcCCch--hhhc------------
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLGLASLM--SKAGLYLPAKNHPRLPWFDLILADIGDHQ--SLEQ------------ 327 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~--aq~G~~vP~~~~~~l~~~d~i~~~ig~~~--~i~~------------ 327 (752)
+++| ..++|+||+|+|||||.-.+..--+. ...++|+-.+.. .-. +-.-+..+|..- .++.
T Consensus 18 lp~g-~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~-~~~-l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~ 94 (484)
T TIGR02655 18 LPIG-RSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEES-PQD-IIKNARSFGWDLQKLVDEGKLFILDASPDP 94 (484)
T ss_pred CCCC-eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC-HHH-HHHHHHHcCCCHHHHhhcCceEEEecCchh
Confidence 4678 89999999999999999988222111 346677765541 111 112223333210 0000
Q ss_pred ----CcccchHH--HHHHHHHHHccCCCcEEEEe---CCCCCCCh--HhHHHHHHHHHHHHhcCCcEEEEEecchh
Q 004463 328 ----NLSTFSGH--ISRIVDILELVSRESLVLID---EIGSGTDP--SEGVALATSILQYLRDRVGLAVVTTHYAD 392 (752)
Q Consensus 328 ----~~stlSgg--~krl~~i~~la~~~~LlLLD---Ep~~glD~--~~~~~L~~all~~l~~~~~tviitTH~~~ 392 (752)
.+..+.-. ..++...+ .-..+..|++| .+....|. ..+..+.. ++..+.+.|+|+|+|||+.+
T Consensus 95 ~~~~~~~~~~l~~~l~~i~~~l-s~g~~qRVvIDSl~aL~~~~~~~~~~r~~l~~-Li~~L~~~g~TvLLtsh~~~ 168 (484)
T TIGR02655 95 EGQDVVGGFDLSALIERINYAI-RKYKAKRVSIDSVTAVFQQYDAVSVVRREIFR-LVARLKQIGVTTVMTTERIE 168 (484)
T ss_pred ccccccccCCHHHHHHHHHHHH-HHhCCcEEEEeehhHhhhhcCchHHHHHHHHH-HHHHHHHCCCEEEEEecCcc
Confidence 01112111 11222121 12467888888 33344444 33455554 77888888999999999864
No 486
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.64 E-value=0.00025 Score=73.47 Aligned_cols=127 Identities=18% Similarity=0.225 Sum_probs=66.9
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHHhhhhhh-------hhceeecCCCCCCchHHHHHHHHcCCc-hhhhcCc---ccc
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLGLASLMS-------KAGLYLPAKNHPRLPWFDLILADIGDH-QSLEQNL---STF 332 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~a-------q~G~~vP~~~~~~l~~~d~i~~~ig~~-~~i~~~~---stl 332 (752)
++.| +++.|+||+|+|||||+..+.....+. ...+|+-.++......+.+++..++.. +.+...+ .-+
T Consensus 16 i~~g-~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 16 IETG-SITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCC-eEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 4578 899999999999999999995443321 233455544422223344444443321 1111111 111
Q ss_pred hHHH-----HHHHHHHHccCCCcEEEEeCCCCCC-----Ch---HhHHH----HHHHHHHHHhcCCcEEEEEecch
Q 004463 333 SGHI-----SRIVDILELVSRESLVLIDEIGSGT-----DP---SEGVA----LATSILQYLRDRVGLAVVTTHYA 391 (752)
Q Consensus 333 Sgg~-----krl~~i~~la~~~~LlLLDEp~~gl-----D~---~~~~~----L~~all~~l~~~~~tviitTH~~ 391 (752)
+..+ .++........++.+|++|-.++-. +. ..+.. ++..+.....+.+++||+|+|-.
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~~ 170 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQVT 170 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccEe
Confidence 2111 1222222222378999999998631 11 23322 33323333346788999988864
No 487
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.62 E-value=6.4e-05 Score=61.98 Aligned_cols=29 Identities=31% Similarity=0.529 Sum_probs=23.1
Q ss_pred eeEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 260 IDIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 260 idl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
-++.+.+...+++|+||||+||||+|..+
T Consensus 15 ~~~~~~~~g~~tli~G~nGsGKSTllDAi 43 (62)
T PF13555_consen 15 ETIDFDPRGDVTLITGPNGSGKSTLLDAI 43 (62)
T ss_pred eEEeecCCCcEEEEECCCCCCHHHHHHHH
Confidence 34555542158999999999999999999
No 488
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.60 E-value=0.00056 Score=77.80 Aligned_cols=141 Identities=16% Similarity=0.135 Sum_probs=83.0
Q ss_pred eEeeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCC--------CCCchHHHHHH-HHcCCchhhhc
Q 004463 257 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKN--------HPRLPWFDLIL-ADIGDHQSLEQ 327 (752)
Q Consensus 257 ~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~--------~~~l~~~d~i~-~~ig~~~~i~~ 327 (752)
.++.-+.+.+| +.++|+||||+||||||++| ++...|..+ ...+ ..+. ..++-+ .+.+
T Consensus 153 ~iD~l~~i~~G-q~~~I~G~sG~GKStLl~~I--------~~~~~~~~~vi~~iG~r~~ev---~~~~~~~~~~~-~l~~ 219 (440)
T TIGR01026 153 SIDGLLTVGKG-QRIGIFAGSGVGKSTLLGMI--------ARNTEADVNVIALIGERGREV---REFIEHDLGEE-GLKR 219 (440)
T ss_pred eeeeccccCCC-cEEEEECCCCCCHHHHHHHH--------hCCCCCCEEEEEEEeecchHH---HHHHHHHhccc-ccce
Confidence 34444889999 89999999999999999999 333222111 0111 1111 112211 0111
Q ss_pred -----CcccchHHHH-HHHHH---H----HccCCCcEEEEe-----------------CC--CCCCChHhHHHHHHHHHH
Q 004463 328 -----NLSTFSGHIS-RIVDI---L----ELVSRESLVLID-----------------EI--GSGTDPSEGVALATSILQ 375 (752)
Q Consensus 328 -----~~stlSgg~k-rl~~i---~----~la~~~~LlLLD-----------------Ep--~~glD~~~~~~L~~all~ 375 (752)
..+.=|..++ +...+ . .-....=||++| || ..|.||.....+.. +++
T Consensus 220 tvvv~~~~d~~p~~r~~~~~~a~t~AE~frd~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gypp~~~~~l~~-l~E 298 (440)
T TIGR01026 220 SVVVVATSDQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPR-LLE 298 (440)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHHhcCCCCcccccChhHHHHHHH-HHH
Confidence 1122223444 21111 1 112334466666 53 45899988888887 777
Q ss_pred HHhcCCc-------EEEEEecchhHHhhhcccccccCCceeecc
Q 004463 376 YLRDRVG-------LAVVTTHYADLSCLKDKDTRFENAATEFSL 412 (752)
Q Consensus 376 ~l~~~~~-------tviitTH~~~l~~~a~~~~~i~~g~v~~~~ 412 (752)
.....+. ||++.+||+. .-+++....+.+|++.++.
T Consensus 299 Rag~~~~GSIT~i~tVl~~~~d~~-dpi~d~~~~i~dG~ivLsr 341 (440)
T TIGR01026 299 RAGASGKGSITAFYTVLVEGDDMN-EPIADSVRGILDGHIVLSR 341 (440)
T ss_pred HhccCCCCeeeEEEEEEccCcCCC-cchhhhhccccceEEEEec
Confidence 6665555 7888899863 3367888888999988863
No 489
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.60 E-value=0.0015 Score=83.18 Aligned_cols=28 Identities=29% Similarity=0.561 Sum_probs=24.8
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
++.+.+.+| +++|+||||||||.++-.|
T Consensus 17 ~~~i~f~~~--~t~IvGPNGSGKSNI~DAi 44 (1163)
T COG1196 17 PTEINFSPG--FTAIVGPNGSGKSNIVDAI 44 (1163)
T ss_pred CeeeecCCC--CeEEECCCCCchHHHHHHH
Confidence 566777777 8999999999999999999
No 490
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.60 E-value=0.00045 Score=79.08 Aligned_cols=136 Identities=15% Similarity=0.139 Sum_probs=74.4
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHH-hhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHHHHHHH
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLG-LASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDI 342 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iG-li~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~krl~~i 342 (752)
+.+| .+++|.|++|+|||||+.++. .+.-.....+|+-.+.. ..-+..-..++|....--.-+...+ ...+...
T Consensus 91 i~~G-svilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs--~~qi~~ra~rlg~~~~~l~~~~e~~--~~~I~~~ 165 (454)
T TIGR00416 91 IVPG-SLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES--LQQIKMRAIRLGLPEPNLYVLSETN--WEQICAN 165 (454)
T ss_pred ccCC-eEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC--HHHHHHHHHHcCCChHHeEEcCCCC--HHHHHHH
Confidence 4678 899999999999999999982 22222223456554431 2112112334554221111111111 1122222
Q ss_pred HHccCCCcEEEEeCCCCCCC---------hHhHHHHHHHHHHHHhcCCcEEEEEecchh---------HHhhhccccccc
Q 004463 343 LELVSRESLVLIDEIGSGTD---------PSEGVALATSILQYLRDRVGLAVVTTHYAD---------LSCLKDKDTRFE 404 (752)
Q Consensus 343 ~~la~~~~LlLLDEp~~glD---------~~~~~~L~~all~~l~~~~~tviitTH~~~---------l~~~a~~~~~i~ 404 (752)
. ...+|++|++|....=.. +.....++..+.++.++.|.|+|+++|... +..++|.++.+.
T Consensus 166 i-~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le 244 (454)
T TIGR00416 166 I-EEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFE 244 (454)
T ss_pred H-HhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEe
Confidence 1 235899999998865321 222334444577777888999999999643 233555555554
Q ss_pred C
Q 004463 405 N 405 (752)
Q Consensus 405 ~ 405 (752)
.
T Consensus 245 ~ 245 (454)
T TIGR00416 245 G 245 (454)
T ss_pred c
Confidence 3
No 491
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.57 E-value=0.00057 Score=76.21 Aligned_cols=120 Identities=17% Similarity=0.209 Sum_probs=66.9
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHHh-hhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchH-HHHHHHH
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLGL-ASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG-HISRIVD 341 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iGl-i~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSg-g~krl~~ 341 (752)
+.+| .++.|.||+|+|||||+..+.. +.-.....+|+..+.. ...+..-..++|.... .+.-++. ....+..
T Consensus 79 i~~G-slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs--~~qi~~Ra~rlg~~~~---~l~l~~e~~le~I~~ 152 (372)
T cd01121 79 LVPG-SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES--PEQIKLRADRLGISTE---NLYLLAETNLEDILA 152 (372)
T ss_pred ccCC-eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC--HHHHHHHHHHcCCCcc---cEEEEccCcHHHHHH
Confidence 4567 8999999999999999999832 2111123456554431 2222222345554211 1111111 1112211
Q ss_pred HHHccCCCcEEEEeCCCCC----CC-----hHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 004463 342 ILELVSRESLVLIDEIGSG----TD-----PSEGVALATSILQYLRDRVGLAVVTTHY 390 (752)
Q Consensus 342 i~~la~~~~LlLLDEp~~g----lD-----~~~~~~L~~all~~l~~~~~tviitTH~ 390 (752)
.. ...+|++|++|+...- +| ...-..++..+.+..++.+.++|++.|-
T Consensus 153 ~i-~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghv 209 (372)
T cd01121 153 SI-EELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHV 209 (372)
T ss_pred HH-HhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeec
Confidence 11 2358999999997432 22 1222344555777777889999999985
No 492
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.55 E-value=7.9e-05 Score=74.95 Aligned_cols=120 Identities=12% Similarity=0.101 Sum_probs=76.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCC-------CCchHHHHHHHHcCCchhhhcCcccchHHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH-------PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDI 342 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~-------~~l~~~d~i~~~ig~~~~i~~~~stlSgg~krl~~i 342 (752)
+++|||+-||||||+.+.+.-. .|+.+-.... ..-+.+..+...+|.. +. .-.|...|..++
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~-----~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~--i~----~~~g~idr~~L~ 69 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADK-----YHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQ--IL----NEDGELDRKALG 69 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHh-----cCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHH--Hh----CCCCCCCHHHHH
Confidence 4799999999999999988211 1122221110 0113455666666621 11 112444588888
Q ss_pred HHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh---HHhhhcccccc
Q 004463 343 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD---LSCLKDKDTRF 403 (752)
Q Consensus 343 ~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~---l~~~a~~~~~i 403 (752)
..+..+|.++..+| +.+||.-...+...+ ..+...+.++|+.+|.+. +..+|+.++.+
T Consensus 70 ~~vf~~~~~~~~le--~ilhP~i~~~i~~~i-~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V 130 (188)
T TIGR00152 70 ERVFNDPEELKWLN--NLLHPLIREWMKKLL-AQFQSKLAYVLLDVPLLFENKLRSLCDRVIVV 130 (188)
T ss_pred HHHhCCHHHHHHHH--HhhCHHHHHHHHHHH-HHhhcCCCEEEEEchHhhhCCcHHhCCEEEEE
Confidence 88888999887776 889999998887744 444445678999999864 34455555433
No 493
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.49 E-value=0.0011 Score=68.17 Aligned_cols=128 Identities=16% Similarity=0.201 Sum_probs=68.0
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHHhhhhhh-------hhceeecCCCCCCchHHHHHHHHcCCc-hhhhcCcc---cc
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLGLASLMS-------KAGLYLPAKNHPRLPWFDLILADIGDH-QSLEQNLS---TF 332 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~a-------q~G~~vP~~~~~~l~~~d~i~~~ig~~-~~i~~~~s---tl 332 (752)
++.| +++.|+||+|+|||||+..+....... ...+|+-.++......+.++...++.. +.+..++. .+
T Consensus 16 ~~~g-~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 16 IPTG-RITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CcCC-cEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 4568 899999999999999999984333222 222455555432333344444443322 11111111 12
Q ss_pred hHHHH-H-HHHHHH--ccCCCcEEEEeCCCCCCCh--------HhHHH----HHHHHHHHHhcCCcEEEEEecchh
Q 004463 333 SGHIS-R-IVDILE--LVSRESLVLIDEIGSGTDP--------SEGVA----LATSILQYLRDRVGLAVVTTHYAD 392 (752)
Q Consensus 333 Sgg~k-r-l~~i~~--la~~~~LlLLDEp~~glD~--------~~~~~----L~~all~~l~~~~~tviitTH~~~ 392 (752)
+..+. . +..+.. ...++++|++|=.++-... .++.. ++..+.....+.++++|+++|-..
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~~~ 170 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQVRA 170 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEEee
Confidence 22222 1 111211 1457889999998753211 12222 233344444567889999998643
No 494
>PRK06893 DNA replication initiation factor; Validated
Probab=97.48 E-value=0.00053 Score=71.42 Aligned_cols=94 Identities=17% Similarity=0.328 Sum_probs=57.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhhhh-hhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHHHHHHHHHccC
Q 004463 269 RVVVITGPNTGGKTASMKTLGLASLMS-KAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVS 347 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iGli~~~a-q~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~krl~~i~~la~ 347 (752)
..+.|.||.|+|||+|+..+|--.... ....|++... .+ .++. .+.....
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~------~~-----------------~~~~------~~~~~~~ 90 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK------SQ-----------------YFSP------AVLENLE 90 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH------hh-----------------hhhH------HHHhhcc
Confidence 568999999999999999995432211 1112333211 00 0000 1122345
Q ss_pred CCcEEEEeCCCCCC-ChHhHHHHHHHHHHHHhcCCcEEEEEecchh
Q 004463 348 RESLVLIDEIGSGT-DPSEGVALATSILQYLRDRVGLAVVTTHYAD 392 (752)
Q Consensus 348 ~~~LlLLDEp~~gl-D~~~~~~L~~all~~l~~~~~tviitTH~~~ 392 (752)
+.++|+|||+.... |+.....|.. ++..+.+.+.++|++|++..
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~-l~n~~~~~~~~illits~~~ 135 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFD-LFNRIKEQGKTLLLISADCS 135 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHH-HHHHHHHcCCcEEEEeCCCC
Confidence 77999999998865 4544455665 67777777777777766643
No 495
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.48 E-value=0.00061 Score=70.38 Aligned_cols=122 Identities=18% Similarity=0.197 Sum_probs=65.4
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHHhhhh-hhhhceeecCCCCCCchHHHHHHHHcCCc--hhhhc-------Ccccch
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGDH--QSLEQ-------NLSTFS 333 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~-~aq~G~~vP~~~~~~l~~~d~i~~~ig~~--~~i~~-------~~stlS 333 (752)
+++| .+++|.||.|+|||+|.-.+..-.+ ....++|+-.+.. ..-+-.-+..+|.+ ..++. ....++
T Consensus 13 i~~g-~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~--~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 89 (224)
T TIGR03880 13 FPEG-HVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEER--EERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFK 89 (224)
T ss_pred CCCC-eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC--HHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHH
Confidence 3567 8999999999999999887722211 1334556655541 11122223333421 11111 111111
Q ss_pred ---HHHH-HHHHHHHccCCCcEEEEeCCC-----CCCChHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 004463 334 ---GHIS-RIVDILELVSRESLVLIDEIG-----SGTDPSEGVALATSILQYLRDRVGLAVVTTHY 390 (752)
Q Consensus 334 ---gg~k-rl~~i~~la~~~~LlLLDEp~-----~glD~~~~~~L~~all~~l~~~~~tviitTH~ 390 (752)
.... .+..+.. -.+++++++|=++ .+.|+..+..+. .++..+.+.+.|++++||.
T Consensus 90 ~~~~~l~~~~~~~i~-~~~~~~vVIDsls~l~~~~~~~~~~r~~l~-~l~~~lk~~~~tvll~s~~ 153 (224)
T TIGR03880 90 TSLNRIKNELPILIK-ELGASRVVIDPISLLETLFDDDAERRTELF-RFYSSLRETGVTTILTSEA 153 (224)
T ss_pred hhHHHHHHHHHHHHH-HhCCCEEEEcChHHHhhhcCCHHHHHHHHH-HHHHHHHhCCCEEEEEEcc
Confidence 1111 1222211 2467899999433 223333344444 4888888889999999996
No 496
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.47 E-value=0.00079 Score=68.61 Aligned_cols=125 Identities=21% Similarity=0.198 Sum_probs=65.6
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHHhhhh-hhhhceeecCCCCCCchHHHHHHHHc-C--CchhhhcCcccchHHHHHH
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADI-G--DHQSLEQNLSTFSGHISRI 339 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~-~aq~G~~vP~~~~~~l~~~d~i~~~i-g--~~~~i~~~~stlSgg~krl 339 (752)
++.| .++.|+||+|+|||||.-.+..... .....+|+..++ .....+.++.... + ....+-..+.++.....-+
T Consensus 9 i~~g-~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~-~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 9 VERG-TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG-LSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCCC-eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 3568 8999999999999999988733222 233456777764 2222233332221 0 0000011111111111123
Q ss_pred HHHHHcc--CCCcEEEEeCCCCCCChH----------hHHHHHHHHHHHHhcCCcEEEEEecc
Q 004463 340 VDILELV--SRESLVLIDEIGSGTDPS----------EGVALATSILQYLRDRVGLAVVTTHY 390 (752)
Q Consensus 340 ~~i~~la--~~~~LlLLDEp~~glD~~----------~~~~L~~all~~l~~~~~tviitTH~ 390 (752)
..+..++ .++++|++|-.++-.... .-..++..+..+..+.+.++|+|+|-
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~ 149 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQV 149 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEccc
Confidence 3332222 378999999998643211 11112233444456778999999885
No 497
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.47 E-value=0.00061 Score=76.71 Aligned_cols=99 Identities=23% Similarity=0.247 Sum_probs=54.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHH-HcCCchhhhcCcccchHHHHHH--HHHHHc
Q 004463 269 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA-DIGDHQSLEQNLSTFSGHISRI--VDILEL 345 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~-~ig~~~~i~~~~stlSgg~krl--~~i~~l 345 (752)
..++|.||+|+|||++.+.++-. .+. ....+... .+.. .+| .+.+.+ .+..+.
T Consensus 180 kgvLL~GppGTGKT~LAkalA~~-----l~~-----~fi~i~~s-~l~~k~~g-------------e~~~~lr~lf~~A~ 235 (398)
T PTZ00454 180 RGVLLYGPPGTGKTMLAKAVAHH-----TTA-----TFIRVVGS-EFVQKYLG-------------EGPRMVRDVFRLAR 235 (398)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh-----cCC-----CEEEEehH-HHHHHhcc-------------hhHHHHHHHHHHHH
Confidence 56899999999999999999211 110 00011100 0110 011 112222 222445
Q ss_pred cCCCcEEEEeCC----------CCCCChHhHHHHHHHHHHHHhc----CCcEEEEEecchh
Q 004463 346 VSRESLVLIDEI----------GSGTDPSEGVALATSILQYLRD----RVGLAVVTTHYAD 392 (752)
Q Consensus 346 a~~~~LlLLDEp----------~~glD~~~~~~L~~all~~l~~----~~~tviitTH~~~ 392 (752)
...|.+|+|||+ .++.|......+.. ++..+.. .+..+|++||+.+
T Consensus 236 ~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~-LL~~ld~~~~~~~v~VI~aTN~~d 295 (398)
T PTZ00454 236 ENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLE-LLNQMDGFDQTTNVKVIMATNRAD 295 (398)
T ss_pred hcCCeEEEEECHhhhccccccccCCccHHHHHHHHH-HHHHhhccCCCCCEEEEEecCCch
Confidence 678999999993 34555554444444 5554432 3457899999865
No 498
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=97.46 E-value=0.0017 Score=57.21 Aligned_cols=89 Identities=21% Similarity=0.288 Sum_probs=66.2
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-eeEEecCeEEEEEecccccCCCCcEEEEEcCCCCEEEec
Q 004463 47 RASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKP-LITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFME 125 (752)
Q Consensus 47 ~as~~L~~ir~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~i~~r~~r~vl~vk~~~~~~~~~g~v~~~s~sg~t~y~e 125 (752)
+++++|+.+|+.+..+...|+.++.+.... .++... ++.....+|+|.|+......+|..|+...+..+...|..
T Consensus 1 g~d~~Ld~~~~~~~~~~~~l~~~~~~~~~~----~~~~~lk~~~~~~~gy~i~v~~~~~~~~p~~~~~~~~~k~~~rf~t 76 (92)
T PF05190_consen 1 GFDEELDELREEYEEIEEELEELLEEIRKK----LGIPSLKLVYIPKRGYLIEVPKSDEKKLPKDFIIVSSTKSGVRFTT 76 (92)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHH----CT-TTBEEEEETTTEEEEEEETCCGGGSTTTEEEEEEESSEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCcEEEEEcCceEEEEEEEccccccCCCceEEEEEEcCcEEEEC
Confidence 478999999999999999999998875542 334233 444444589999999888888989988777656556655
Q ss_pred ccchhhhHHHHHHHh
Q 004463 126 PKGAVEFNNMEVRLS 140 (752)
Q Consensus 126 p~~~v~lnn~~~~l~ 140 (752)
| ++..|+.++.++.
T Consensus 77 ~-~l~~L~~~~~~~~ 90 (92)
T PF05190_consen 77 P-ELKELNEELKEAE 90 (92)
T ss_dssp H-HHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHh
Confidence 5 5888888876554
No 499
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.45 E-value=0.00014 Score=81.00 Aligned_cols=59 Identities=20% Similarity=0.119 Sum_probs=48.7
Q ss_pred ccchHHHH-HHHHHHHccC---------CCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh
Q 004463 330 STFSGHIS-RIVDILELVS---------RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 392 (752)
Q Consensus 330 stlSgg~k-rl~~i~~la~---------~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~ 392 (752)
..+|.||+ .+.+++.++. .|++||||||+++||+..+..|...+.. .|..+++|||+.+
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~----~~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQS----LGVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhh----cCCEEEEEecChh
Confidence 46799998 5777788877 8999999999999999999888874333 2679999999876
No 500
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.45 E-value=0.00064 Score=71.80 Aligned_cols=126 Identities=13% Similarity=0.187 Sum_probs=57.9
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHH-hhhhhhhh--ceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHHHHH
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLG-LASLMSKA--GLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIV 340 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iG-li~~~aq~--G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~krl~ 340 (752)
+..+..+++|+||||+||||+++.+. .+.. ... ...++... .....+..+...+|....- .....+-.......
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~~~~~~~~~~~-~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l 115 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIRNLLKRLDQ-ERVVAAKLVNTRV-DAEDLLRMVAADFGLETEG-RDKAALLRELEDFL 115 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCeEEeeeeCCCC-CHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHH
Confidence 34443589999999999999999881 1110 000 00111111 1112344555666653211 10000001111111
Q ss_pred HHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCc-EEEEEecchhHH
Q 004463 341 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG-LAVVTTHYADLS 394 (752)
Q Consensus 341 ~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~-tviitTH~~~l~ 394 (752)
........+-+|++||.- .+++.....+.. +.+.....+. ..|+.|...++.
T Consensus 116 ~~~~~~~~~~vliiDe~~-~l~~~~~~~l~~-l~~~~~~~~~~~~vvl~g~~~~~ 168 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQ-NLTPELLEELRM-LSNFQTDNAKLLQIFLVGQPEFR 168 (269)
T ss_pred HHHHhCCCCeEEEEECcc-cCCHHHHHHHHH-HhCcccCCCCeEEEEEcCCHHHH
Confidence 122334667799999944 467655444432 3332222222 234555555543
Done!