Query 004463
Match_columns 752
No_of_seqs 465 out of 4799
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 01:55:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004463.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004463hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wb9_A DNA mismatch repair pro 100.0 2.6E-57 9.1E-62 541.0 31.5 396 12-454 386-795 (800)
2 1ewq_A DNA mismatch repair pro 100.0 9.5E-52 3.3E-56 490.7 33.5 389 13-455 359-762 (765)
3 3thx_B DNA mismatch repair pro 100.0 5E-52 1.7E-56 499.7 29.7 363 48-453 492-875 (918)
4 2o8b_B DNA mismatch repair pro 100.0 2.4E-52 8.1E-57 509.4 25.5 395 22-457 563-987 (1022)
5 3thx_A DNA mismatch repair pro 100.0 8.1E-51 2.8E-55 490.5 31.5 392 23-457 444-853 (934)
6 2pcj_A ABC transporter, lipopr 100.0 2.5E-29 8.6E-34 258.2 15.7 167 243-411 4-220 (224)
7 1vpl_A ABC transporter, ATP-bi 100.0 6.9E-29 2.3E-33 260.0 15.8 168 242-411 14-227 (256)
8 3gfo_A Cobalt import ATP-bindi 100.0 5.6E-29 1.9E-33 263.2 14.8 168 242-411 6-225 (275)
9 4g1u_C Hemin import ATP-bindin 100.0 7E-29 2.4E-33 261.3 15.4 168 242-411 10-229 (266)
10 3tif_A Uncharacterized ABC tra 100.0 6E-29 2E-33 257.2 14.5 167 243-411 1-226 (235)
11 2olj_A Amino acid ABC transpor 100.0 1.5E-28 5E-33 258.4 16.0 167 243-411 24-240 (263)
12 3fvq_A Fe(3+) IONS import ATP- 100.0 1.5E-28 5.2E-33 268.1 15.8 168 243-411 4-220 (359)
13 1ji0_A ABC transporter; ATP bi 100.0 1.1E-28 3.6E-33 256.1 13.9 168 242-411 5-220 (240)
14 1b0u_A Histidine permease; ABC 100.0 2.4E-28 8.2E-33 256.7 15.5 167 243-411 6-234 (262)
15 3tui_C Methionine import ATP-b 100.0 2.8E-28 9.7E-33 266.2 15.9 170 240-411 21-245 (366)
16 1g6h_A High-affinity branched- 100.0 4.6E-28 1.6E-32 253.9 15.7 168 242-411 6-234 (257)
17 1z47_A CYSA, putative ABC-tran 99.9 5.5E-28 1.9E-32 263.7 14.6 171 240-411 11-227 (355)
18 3rlf_A Maltose/maltodextrin im 99.9 5.6E-28 1.9E-32 265.4 14.4 168 243-411 3-215 (381)
19 2yyz_A Sugar ABC transporter, 99.9 1.2E-27 4.1E-32 261.5 15.6 168 243-411 3-215 (359)
20 2nq2_C Hypothetical ABC transp 99.9 1.5E-27 5E-32 249.5 15.4 165 243-410 4-208 (253)
21 2yz2_A Putative ABC transporte 99.9 1.5E-27 5E-32 251.3 15.3 167 243-411 2-219 (266)
22 3d31_A Sulfate/molybdate ABC t 99.9 1.8E-27 6.2E-32 259.2 15.1 168 243-411 1-209 (348)
23 2d2e_A SUFC protein; ABC-ATPas 99.9 1.3E-27 4.5E-32 249.4 13.1 167 243-411 3-225 (250)
24 2it1_A 362AA long hypothetical 99.9 1.4E-27 4.8E-32 261.3 13.9 168 243-411 3-215 (362)
25 2ihy_A ABC transporter, ATP-bi 99.9 1.4E-27 4.6E-32 253.2 12.8 168 242-411 20-244 (279)
26 2onk_A Molybdate/tungstate ABC 99.9 1.4E-27 4.9E-32 247.7 12.6 165 243-411 1-208 (240)
27 1v43_A Sugar-binding transport 99.9 2.2E-27 7.4E-32 260.7 13.4 168 243-411 11-223 (372)
28 2ixe_A Antigen peptide transpo 99.9 1.9E-27 6.4E-32 251.1 12.3 168 242-411 15-237 (271)
29 1mv5_A LMRA, multidrug resista 99.9 2.7E-27 9.2E-32 246.0 12.7 165 243-410 1-217 (243)
30 2ff7_A Alpha-hemolysin translo 99.9 5.4E-27 1.8E-31 244.4 14.8 166 243-411 7-224 (247)
31 1g29_1 MALK, maltose transport 99.9 4.3E-27 1.5E-31 258.6 14.8 168 243-411 3-221 (372)
32 1oxx_K GLCV, glucose, ABC tran 99.9 2.6E-27 8.8E-32 258.8 12.6 168 243-411 3-222 (353)
33 2pjz_A Hypothetical protein ST 99.9 9.8E-27 3.3E-31 244.5 15.8 162 243-411 1-207 (263)
34 1sgw_A Putative ABC transporte 99.9 3.8E-27 1.3E-31 240.4 11.9 158 242-403 9-206 (214)
35 2zu0_C Probable ATP-dependent 99.9 6.9E-27 2.3E-31 246.3 13.3 168 242-411 19-246 (267)
36 2pze_A Cystic fibrosis transme 99.9 5.7E-27 1.9E-31 241.5 10.4 167 242-411 5-210 (229)
37 2qi9_C Vitamin B12 import ATP- 99.9 1.4E-26 4.8E-31 241.5 13.2 164 243-411 4-214 (249)
38 2cbz_A Multidrug resistance-as 99.9 9.4E-27 3.2E-31 241.1 10.1 166 243-411 3-209 (237)
39 2ghi_A Transport protein; mult 99.9 4.3E-26 1.5E-30 239.3 13.2 167 242-411 16-234 (260)
40 3nh6_A ATP-binding cassette SU 99.9 6E-26 2.1E-30 243.3 13.3 167 242-411 52-269 (306)
41 3gd7_A Fusion complex of cysti 99.9 7.1E-25 2.4E-29 242.1 10.1 167 242-411 18-234 (390)
42 2bbs_A Cystic fibrosis transme 99.9 1.3E-24 4.4E-29 231.5 10.7 166 242-411 39-239 (290)
43 1yqt_A RNAse L inhibitor; ATP- 99.9 7.8E-24 2.7E-28 243.6 15.0 164 241-405 285-477 (538)
44 3ozx_A RNAse L inhibitor; ATP 99.9 4.5E-24 1.6E-28 245.3 13.0 164 241-405 267-461 (538)
45 3bk7_A ABC transporter ATP-bin 99.9 1.4E-23 4.7E-28 244.3 16.8 164 241-405 355-547 (607)
46 3b5x_A Lipid A export ATP-bind 99.9 1.1E-23 3.8E-28 244.8 15.0 168 241-411 339-559 (582)
47 1yqt_A RNAse L inhibitor; ATP- 99.9 1.8E-23 6.2E-28 240.6 13.4 157 247-406 25-234 (538)
48 3b60_A Lipid A export ATP-bind 99.9 1.4E-23 4.7E-28 244.1 12.5 168 241-411 339-559 (582)
49 3bk7_A ABC transporter ATP-bin 99.9 3.4E-23 1.2E-27 241.1 14.9 156 247-405 95-303 (607)
50 2yl4_A ATP-binding cassette SU 99.9 4.6E-23 1.6E-27 240.3 14.1 167 242-411 339-562 (595)
51 2zqe_A MUTS2 protein; alpha/be 99.9 2.4E-23 8.2E-28 180.3 8.3 75 678-752 4-82 (83)
52 3qf4_B Uncharacterized ABC tra 99.9 3.6E-23 1.2E-27 241.2 12.3 168 241-411 352-570 (598)
53 2iw3_A Elongation factor 3A; a 99.9 3.1E-23 1.1E-27 249.9 11.2 95 313-411 881-979 (986)
54 4a82_A Cystic fibrosis transme 99.9 4.9E-23 1.7E-27 239.2 12.1 168 241-411 337-556 (578)
55 3qf4_A ABC transporter, ATP-bi 99.9 7.5E-23 2.5E-27 238.1 13.4 168 241-411 339-558 (587)
56 2iw3_A Elongation factor 3A; a 99.9 3.5E-22 1.2E-26 240.8 17.9 162 243-409 435-624 (986)
57 3j16_B RLI1P; ribosome recycli 99.9 1.9E-22 6.5E-27 234.5 13.6 148 248-406 82-297 (608)
58 3j16_B RLI1P; ribosome recycli 99.9 6.9E-22 2.3E-26 229.9 15.1 164 247-410 350-550 (608)
59 3ozx_A RNAse L inhibitor; ATP 99.8 2.1E-21 7.1E-26 223.2 13.4 148 248-406 4-213 (538)
60 3ux8_A Excinuclease ABC, A sub 99.8 4.4E-21 1.5E-25 226.6 14.4 94 316-410 186-289 (670)
61 3g5u_A MCG1178, multidrug resi 99.8 1.7E-20 5.8E-25 235.4 11.1 168 241-411 1028-1250(1284)
62 3g5u_A MCG1178, multidrug resi 99.8 3.2E-20 1.1E-24 232.9 13.2 167 241-410 385-604 (1284)
63 3qd7_X Uncharacterized protein 99.8 3.3E-20 1.1E-24 175.2 7.2 76 677-752 46-131 (137)
64 3ux8_A Excinuclease ABC, A sub 99.8 1.8E-19 6.1E-24 212.8 14.8 95 316-411 527-632 (670)
65 4f4c_A Multidrug resistance pr 99.8 1.6E-19 5.5E-24 227.2 13.3 167 241-410 413-632 (1321)
66 4f4c_A Multidrug resistance pr 99.8 2.2E-19 7.5E-24 225.9 12.4 168 241-411 1074-1296(1321)
67 2r6f_A Excinuclease ABC subuni 99.8 1.4E-18 4.7E-23 208.3 15.5 97 314-411 827-934 (972)
68 4gp7_A Metallophosphoesterase; 99.8 2.2E-19 7.5E-24 176.1 7.0 135 259-396 1-164 (171)
69 2vf7_A UVRA2, excinuclease ABC 99.8 2.2E-18 7.5E-23 206.0 16.9 97 314-411 712-819 (842)
70 2ygr_A Uvrabc system protein A 99.8 2.5E-18 8.6E-23 206.7 16.3 97 314-411 845-952 (993)
71 3pih_A Uvrabc system protein A 99.7 2.6E-18 9E-23 206.9 13.5 96 315-411 788-894 (916)
72 3qf7_A RAD50; ABC-ATPase, ATPa 99.7 6.4E-18 2.2E-22 185.6 14.1 83 326-409 274-363 (365)
73 4aby_A DNA repair protein RECN 99.7 7.5E-18 2.6E-22 187.1 13.3 78 332-411 296-380 (415)
74 2npi_A Protein CLP1; CLP1-PCF1 99.7 2.4E-19 8.2E-24 202.3 -4.5 157 241-409 116-329 (460)
75 1e69_A Chromosome segregation 99.7 4.5E-16 1.5E-20 167.8 13.9 83 326-410 214-303 (322)
76 1ye8_A Protein THEP1, hypothet 99.6 6.3E-17 2.2E-21 160.1 4.0 125 270-399 2-152 (178)
77 3qkt_A DNA double-strand break 99.6 2.6E-15 8.7E-20 163.1 14.9 78 326-404 243-327 (339)
78 3b85_A Phosphate starvation-in 99.6 2.1E-17 7.1E-22 167.7 -2.8 121 265-395 20-162 (208)
79 2d9i_A NEDD4-binding protein 2 99.6 1.1E-15 3.6E-20 136.2 7.7 71 677-752 7-90 (96)
80 1tq4_A IIGP1, interferon-induc 99.5 5.4E-16 1.9E-20 172.3 -3.6 139 259-401 41-248 (413)
81 2vkc_A NEDD4-binding protein 2 99.5 1.9E-14 6.5E-19 135.9 7.2 70 678-752 53-135 (135)
82 1tf7_A KAIC; homohexamer, hexa 99.5 5E-14 1.7E-18 161.7 9.5 159 244-407 258-444 (525)
83 2ehv_A Hypothetical protein PH 99.4 1.1E-13 3.8E-18 141.7 9.1 138 263-404 26-206 (251)
84 1znw_A Guanylate kinase, GMP k 99.4 4.5E-15 1.5E-19 149.5 -1.5 59 344-403 137-201 (207)
85 2pt7_A CAG-ALFA; ATPase, prote 99.4 6E-15 2E-19 159.8 -2.2 137 246-407 151-291 (330)
86 2obl_A ESCN; ATPase, hydrolase 99.4 2.2E-14 7.5E-19 156.3 1.8 153 243-411 45-247 (347)
87 3fau_A NEDD4-binding protein 2 99.4 1.8E-13 6.1E-18 118.2 6.1 68 680-752 2-82 (82)
88 4a74_A DNA repair and recombin 99.4 3.4E-13 1.1E-17 136.4 8.8 142 264-406 22-200 (231)
89 2v9p_A Replication protein E1; 99.4 1.7E-15 5.6E-20 162.0 -9.3 140 243-411 101-258 (305)
90 2w0m_A SSO2452; RECA, SSPF, un 99.4 3.2E-12 1.1E-16 129.0 13.6 139 264-405 20-191 (235)
91 1nlf_A Regulatory protein REPA 99.4 1.9E-12 6.5E-17 136.2 11.2 126 264-393 27-183 (279)
92 1cr0_A DNA primase/helicase; R 99.3 1.6E-12 5.3E-17 137.9 10.2 148 259-408 27-237 (296)
93 1f2t_B RAD50 ABC-ATPase; DNA d 99.3 1.2E-12 4E-17 125.6 8.2 79 324-403 50-135 (148)
94 1tf7_A KAIC; homohexamer, hexa 99.3 7.7E-14 2.6E-18 160.2 -0.5 142 259-405 30-209 (525)
95 3b9q_A Chloroplast SRP recepto 99.3 3.7E-13 1.3E-17 143.9 4.2 121 259-390 92-256 (302)
96 2eyu_A Twitching motility prot 99.3 1E-13 3.5E-18 145.2 -0.8 126 259-405 19-147 (261)
97 2dpy_A FLII, flagellum-specifi 99.3 2.8E-13 9.6E-18 151.9 2.1 156 243-411 131-336 (438)
98 3aez_A Pantothenate kinase; tr 99.3 1.8E-14 6E-19 154.9 -7.6 153 241-405 41-244 (312)
99 2og2_A Putative signal recogni 99.3 1.7E-12 5.7E-17 141.9 5.1 122 259-390 149-313 (359)
100 3ec2_A DNA replication protein 99.3 1E-12 3.5E-17 128.8 2.7 109 261-391 32-143 (180)
101 2cvh_A DNA repair and recombin 99.2 4.2E-11 1.4E-15 120.1 12.7 139 264-405 17-184 (220)
102 3sop_A Neuronal-specific septi 99.2 1.4E-12 4.7E-17 137.3 -0.9 114 270-392 4-151 (270)
103 1z6g_A Guanylate kinase; struc 99.2 4.9E-13 1.7E-17 136.1 -4.5 127 259-392 15-195 (218)
104 3pih_A Uvrabc system protein A 99.2 3.4E-11 1.2E-15 145.3 9.7 97 314-411 446-552 (916)
105 2r6f_A Excinuclease ABC subuni 99.2 6E-11 2.1E-15 142.6 11.0 95 316-411 488-592 (972)
106 2ygr_A Uvrabc system protein A 99.1 7.3E-11 2.5E-15 142.3 10.7 95 316-411 505-609 (993)
107 2jeo_A Uridine-cytidine kinase 99.1 1.3E-11 4.5E-16 127.4 3.5 123 259-396 17-171 (245)
108 2vf7_A UVRA2, excinuclease ABC 99.1 9.7E-11 3.3E-15 140.3 11.4 95 316-411 363-467 (842)
109 3jvv_A Twitching mobility prot 99.1 1.3E-11 4.6E-16 134.7 2.9 124 263-405 119-245 (356)
110 1pzn_A RAD51, DNA repair and r 99.1 2.4E-10 8.3E-15 124.5 12.3 130 262-392 126-287 (349)
111 3asz_A Uridine kinase; cytidin 99.1 3.1E-13 1.1E-17 135.7 -10.5 123 265-391 4-161 (211)
112 2i3b_A HCR-ntpase, human cance 99.1 8.7E-12 3E-16 124.4 -1.2 129 269-409 2-166 (189)
113 1n0w_A DNA repair protein RAD5 99.1 5.5E-10 1.9E-14 113.7 11.8 128 264-392 21-175 (243)
114 2kjq_A DNAA-related protein; s 99.0 4.2E-10 1.4E-14 107.7 9.0 88 266-390 35-124 (149)
115 2qnr_A Septin-2, protein NEDD5 99.0 3.3E-11 1.1E-15 128.7 -0.1 128 247-392 2-168 (301)
116 2qag_C Septin-7; cell cycle, c 99.0 1.1E-10 3.8E-15 130.0 2.7 130 242-392 10-178 (418)
117 1pui_A ENGB, probable GTP-bind 98.9 2.1E-10 7.3E-15 114.1 3.2 134 243-378 3-198 (210)
118 3kta_B Chromosome segregation 98.9 1.8E-09 6E-14 106.2 8.7 76 326-403 59-139 (173)
119 3szr_A Interferon-induced GTP- 98.9 1.3E-10 4.5E-15 135.5 0.2 48 346-393 144-198 (608)
120 2qag_B Septin-6, protein NEDD5 98.9 1.5E-09 5E-14 120.8 8.0 144 245-390 18-218 (427)
121 1lw7_A Transcriptional regulat 98.9 1.4E-10 4.7E-15 127.0 -1.2 143 259-402 160-340 (365)
122 4ad8_A DNA repair protein RECN 98.9 1E-09 3.4E-14 125.7 5.7 79 326-406 391-473 (517)
123 2ewv_A Twitching motility prot 98.9 1.5E-09 5E-14 119.3 6.1 121 264-403 133-256 (372)
124 1rj9_A FTSY, signal recognitio 98.8 1.3E-09 4.4E-14 116.6 2.8 119 266-392 101-259 (304)
125 3lda_A DNA repair protein RAD5 98.8 2.3E-08 7.7E-13 110.8 11.5 127 264-391 175-328 (400)
126 1s96_A Guanylate kinase, GMP k 98.7 6.2E-09 2.1E-13 106.1 5.9 118 262-393 11-142 (219)
127 1sxj_E Activator 1 40 kDa subu 98.7 2.7E-08 9.1E-13 107.3 9.0 44 346-392 132-175 (354)
128 1w1w_A Structural maintenance 98.7 2.2E-08 7.7E-13 111.7 8.6 78 326-404 328-410 (430)
129 1htw_A HI0065; nucleotide-bind 98.7 1.2E-09 4E-14 105.8 -1.8 55 246-310 10-66 (158)
130 3auy_A DNA double-strand break 98.6 3E-08 1E-12 108.6 8.0 76 327-404 276-359 (371)
131 2px0_A Flagellar biosynthesis 98.6 2.9E-07 9.9E-12 97.9 13.5 134 266-411 104-247 (296)
132 2dr3_A UPF0273 protein PH0284; 98.6 4.1E-07 1.4E-11 92.3 12.7 136 264-403 20-194 (247)
133 2gza_A Type IV secretion syste 98.5 8.4E-09 2.9E-13 112.8 -0.0 126 259-406 167-302 (361)
134 2o5v_A DNA replication and rep 98.5 4.9E-08 1.7E-12 106.6 5.7 79 326-411 259-348 (359)
135 2bbw_A Adenylate kinase 4, AK4 98.5 1.8E-08 6.2E-13 103.7 0.4 30 346-375 162-195 (246)
136 2zr9_A Protein RECA, recombina 98.5 7.6E-07 2.6E-11 96.9 13.0 123 264-391 58-198 (349)
137 1ls1_A Signal recognition part 98.4 4.4E-07 1.5E-11 96.4 9.6 133 247-389 80-220 (295)
138 1udx_A The GTP-binding protein 98.4 4.9E-08 1.7E-12 108.6 0.3 133 258-399 148-318 (416)
139 2bdt_A BH3686; alpha-beta prot 98.3 2.4E-08 8E-13 98.2 -3.9 49 359-411 126-176 (189)
140 3e70_C DPA, signal recognition 98.3 9.7E-07 3.3E-11 95.2 7.9 27 265-292 127-154 (328)
141 1vma_A Cell division protein F 98.3 2.3E-06 7.9E-11 91.4 10.4 94 259-359 96-197 (306)
142 1zp6_A Hypothetical protein AT 98.2 3.9E-08 1.3E-12 96.5 -3.8 24 264-288 6-29 (191)
143 3hr8_A Protein RECA; alpha and 98.2 1.1E-05 3.8E-10 87.8 15.1 122 264-390 58-197 (356)
144 1sq5_A Pantothenate kinase; P- 98.2 1.9E-07 6.5E-12 99.7 0.5 48 241-291 35-104 (308)
145 1odf_A YGR205W, hypothetical 3 98.2 3.7E-07 1.3E-11 96.9 2.1 97 266-365 30-169 (290)
146 2yhs_A FTSY, cell division pro 98.2 9.2E-07 3.1E-11 99.8 4.9 33 259-292 285-318 (503)
147 1nij_A Hypothetical protein YJ 98.1 1.6E-06 5.5E-11 93.0 4.6 20 269-288 5-24 (318)
148 2r6a_A DNAB helicase, replicat 98.1 1.3E-05 4.4E-10 90.1 11.5 125 263-389 199-362 (454)
149 1fnn_A CDC6P, cell division co 98.1 1.6E-05 5.4E-10 86.1 11.7 119 270-394 46-172 (389)
150 3lnc_A Guanylate kinase, GMP k 98.0 2.1E-06 7.2E-11 87.2 2.4 29 259-288 19-47 (231)
151 2qm8_A GTPase/ATPase; G protei 97.9 4.4E-07 1.5E-11 98.2 -3.8 45 243-288 29-75 (337)
152 2xau_A PRE-mRNA-splicing facto 97.9 9.6E-06 3.3E-10 97.1 6.3 132 264-398 106-260 (773)
153 3euj_A Chromosome partition pr 97.9 7.2E-06 2.4E-10 92.6 4.8 40 259-308 22-61 (483)
154 2ce7_A Cell division protein F 97.9 1.8E-05 6.3E-10 89.3 8.1 106 260-392 44-165 (476)
155 1v5w_A DMC1, meiotic recombina 97.9 4.8E-05 1.6E-09 82.3 10.9 128 264-392 119-275 (343)
156 3tr0_A Guanylate kinase, GMP k 97.9 5.1E-06 1.8E-10 82.0 2.8 29 261-290 1-30 (205)
157 2z43_A DNA repair and recombin 97.7 8.3E-05 2.8E-09 79.7 9.7 127 264-391 104-258 (324)
158 2z4s_A Chromosomal replication 97.7 2.1E-05 7.2E-10 88.0 4.9 102 269-391 131-237 (440)
159 3nwj_A ATSK2; P loop, shikimat 97.7 3.7E-06 1.3E-10 87.2 -1.4 45 243-288 17-68 (250)
160 2qby_A CDC6 homolog 1, cell di 97.7 1.9E-05 6.4E-10 85.1 3.6 120 269-393 46-175 (386)
161 1ni3_A YCHF GTPase, YCHF GTP-b 97.6 6.1E-07 2.1E-11 99.0 -8.3 60 348-410 139-204 (392)
162 1u94_A RECA protein, recombina 97.6 0.00036 1.2E-08 76.0 13.5 122 264-391 60-200 (356)
163 1qhl_A Protein (cell division 97.6 2.1E-06 7.1E-11 87.8 -3.9 50 243-307 9-58 (227)
164 2ius_A DNA translocase FTSK; n 97.6 3E-05 1E-09 88.2 4.9 29 259-288 159-187 (512)
165 2rcn_A Probable GTPase ENGC; Y 97.6 1.8E-05 6.1E-10 86.2 2.9 96 266-379 214-346 (358)
166 3kl4_A SRP54, signal recogniti 97.6 0.00022 7.5E-09 79.5 11.2 118 269-390 98-223 (433)
167 1ixz_A ATP-dependent metallopr 97.6 3.2E-05 1.1E-09 79.4 3.9 40 246-288 28-69 (254)
168 3c8u_A Fructokinase; YP_612366 97.6 3.6E-05 1.2E-09 76.9 4.2 27 265-292 20-47 (208)
169 3kta_A Chromosome segregation 97.6 3.1E-05 1.1E-09 75.1 3.5 28 259-288 19-46 (182)
170 2w58_A DNAI, primosome compone 97.5 2.2E-05 7.4E-10 77.6 2.0 20 269-288 55-74 (202)
171 1lvg_A Guanylate kinase, GMP k 97.5 2.6E-05 8.9E-10 77.5 2.0 26 265-291 2-28 (198)
172 4a1f_A DNAB helicase, replicat 97.5 0.00019 6.7E-09 77.5 8.6 118 264-391 43-166 (338)
173 3a00_A Guanylate kinase, GMP k 97.5 3.4E-05 1.2E-09 75.6 2.4 23 269-291 2-25 (186)
174 2e87_A Hypothetical protein PH 97.5 4.9E-05 1.7E-09 82.6 3.8 113 269-391 168-292 (357)
175 1iy2_A ATP-dependent metallopr 97.5 4E-05 1.4E-09 79.9 3.1 41 245-288 51-93 (278)
176 1p9r_A General secretion pathw 97.4 1.1E-05 3.8E-10 89.7 -1.8 42 244-288 144-187 (418)
177 2x8a_A Nuclear valosin-contain 97.4 0.00012 4.2E-09 76.6 6.2 27 259-288 38-64 (274)
178 1oix_A RAS-related protein RAB 97.4 7.8E-05 2.7E-09 73.0 4.4 36 339-376 154-189 (191)
179 1in4_A RUVB, holliday junction 97.4 2E-05 6.7E-10 84.9 -0.1 46 243-288 18-71 (334)
180 1qvr_A CLPB protein; coiled co 97.4 0.00051 1.7E-08 83.1 12.2 21 269-289 192-212 (854)
181 2j41_A Guanylate kinase; GMP, 97.4 5.3E-05 1.8E-09 74.6 2.8 25 263-288 2-26 (207)
182 1w1w_A Structural maintenance 97.4 9.5E-05 3.3E-09 82.3 4.3 40 244-288 7-46 (430)
183 3k1j_A LON protease, ATP-depen 97.3 5.3E-06 1.8E-10 96.6 -6.3 40 248-288 39-80 (604)
184 1zu4_A FTSY; GTPase, signal re 97.3 0.0014 4.8E-08 70.2 12.9 29 259-288 97-125 (320)
185 3b9p_A CG5977-PA, isoform A; A 97.3 0.00066 2.3E-08 70.9 9.9 101 269-392 55-170 (297)
186 2i1q_A DNA repair and recombin 97.3 0.0007 2.4E-08 72.1 10.1 127 264-391 95-259 (322)
187 3bos_A Putative DNA replicatio 97.3 0.00023 7.8E-09 71.2 5.9 92 269-390 53-147 (242)
188 3m6a_A ATP-dependent protease 97.2 1.7E-05 5.7E-10 91.3 -3.6 40 247-288 87-128 (543)
189 1xp8_A RECA protein, recombina 97.2 0.0037 1.3E-07 68.1 15.0 122 264-391 71-211 (366)
190 1l8q_A Chromosomal replication 97.2 0.00039 1.4E-08 73.9 6.7 101 269-390 38-140 (324)
191 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.00072 2.5E-08 72.4 8.5 105 264-390 120-235 (331)
192 3uie_A Adenylyl-sulfate kinase 97.2 6.8E-05 2.3E-09 74.3 0.5 29 259-288 17-45 (200)
193 1kgd_A CASK, peripheral plasma 97.2 0.00018 6.2E-09 70.0 3.4 22 266-288 4-25 (180)
194 4e22_A Cytidylate kinase; P-lo 97.1 0.00015 5.1E-09 74.8 2.7 32 265-305 25-59 (252)
195 1f2t_A RAD50 ABC-ATPase; DNA d 97.1 0.00026 8.8E-09 67.3 3.7 27 261-289 18-44 (149)
196 4eun_A Thermoresistant glucoki 97.1 0.00023 8E-09 70.3 3.4 26 262-288 24-49 (200)
197 2oap_1 GSPE-2, type II secreti 97.1 8.6E-05 2.9E-09 84.7 0.2 38 259-305 252-289 (511)
198 3pxg_A Negative regulator of g 97.1 0.00055 1.9E-08 77.1 6.6 21 269-289 202-222 (468)
199 3bh0_A DNAB-like replicative h 97.0 0.0013 4.5E-08 70.1 9.0 120 264-390 65-190 (315)
200 1njg_A DNA polymerase III subu 97.0 0.0019 6.5E-08 63.8 9.4 20 269-288 46-65 (250)
201 2v1u_A Cell division control p 97.0 0.00098 3.4E-08 71.6 7.7 119 269-392 45-178 (387)
202 3vaa_A Shikimate kinase, SK; s 97.0 0.00031 1.1E-08 69.4 3.4 29 259-288 17-45 (199)
203 3cf0_A Transitional endoplasmi 97.0 0.00089 3E-08 70.7 7.0 24 264-288 46-69 (301)
204 1u0l_A Probable GTPase ENGC; p 97.0 0.00029 9.9E-09 74.7 3.2 33 265-306 167-199 (301)
205 3llm_A ATP-dependent RNA helic 97.0 0.001 3.5E-08 67.5 7.2 23 265-288 74-96 (235)
206 3tau_A Guanylate kinase, GMP k 97.0 0.00029 1E-08 70.3 2.8 23 265-288 6-28 (208)
207 2o5v_A DNA replication and rep 97.0 0.00043 1.5E-08 75.4 4.3 30 259-290 19-48 (359)
208 2qgz_A Helicase loader, putati 96.9 0.00021 7.1E-09 76.2 1.5 101 269-390 153-257 (308)
209 2dhr_A FTSH; AAA+ protein, hex 96.9 0.00042 1.4E-08 78.7 3.6 40 246-288 43-84 (499)
210 1lv7_A FTSH; alpha/beta domain 96.9 0.0029 1E-07 64.7 9.4 19 270-288 47-65 (257)
211 3qks_A DNA double-strand break 96.8 0.00075 2.6E-08 67.3 4.3 27 261-289 18-44 (203)
212 1ypw_A Transitional endoplasmi 96.8 0.00083 2.8E-08 80.7 5.4 26 262-288 233-258 (806)
213 2yv5_A YJEQ protein; hydrolase 96.8 0.00066 2.2E-08 72.1 3.9 33 265-307 163-195 (302)
214 1t9h_A YLOQ, probable GTPase E 96.8 0.00015 5.2E-09 77.3 -1.1 36 262-306 168-203 (307)
215 2ffh_A Protein (FFH); SRP54, s 96.8 0.0044 1.5E-07 68.9 10.4 38 248-288 81-118 (425)
216 1knq_A Gluconate kinase; ALFA/ 96.7 0.00071 2.4E-08 64.9 3.6 22 266-288 7-28 (175)
217 3io5_A Recombination and repai 96.7 0.012 4.2E-07 62.8 13.3 123 264-392 26-173 (333)
218 1sxj_C Activator 1 40 kDa subu 96.7 0.00046 1.6E-08 74.0 2.1 39 249-288 24-66 (340)
219 1kag_A SKI, shikimate kinase I 96.7 0.00066 2.2E-08 64.9 2.7 20 269-288 5-24 (173)
220 4fcw_A Chaperone protein CLPB; 96.7 0.002 6.7E-08 67.5 6.5 21 269-289 48-68 (311)
221 3h4m_A Proteasome-activating n 96.7 0.0042 1.4E-07 64.3 9.0 20 269-288 52-71 (285)
222 1rz3_A Hypothetical protein rb 96.6 0.00067 2.3E-08 67.2 2.6 23 265-288 20-42 (201)
223 2vp4_A Deoxynucleoside kinase; 96.6 0.0007 2.4E-08 68.6 2.7 23 265-288 18-40 (230)
224 3lxx_A GTPase IMAP family memb 96.6 0.00075 2.6E-08 68.5 3.0 45 344-389 108-154 (239)
225 3t15_A Ribulose bisphosphate c 96.6 0.0028 9.7E-08 66.7 7.4 20 269-288 37-56 (293)
226 1j8m_F SRP54, signal recogniti 96.6 0.0051 1.7E-07 65.1 9.0 39 248-288 79-118 (297)
227 2r8r_A Sensor protein; KDPD, P 96.6 0.0011 3.7E-08 67.5 3.6 123 266-396 4-132 (228)
228 3ney_A 55 kDa erythrocyte memb 96.6 0.001 3.4E-08 66.4 3.3 23 265-288 17-39 (197)
229 2p65_A Hypothetical protein PF 96.5 0.00029 1E-08 67.3 -0.9 20 269-288 44-63 (187)
230 3auy_A DNA double-strand break 96.5 0.0019 6.6E-08 70.3 5.4 31 259-291 18-48 (371)
231 1jbk_A CLPB protein; beta barr 96.5 0.00041 1.4E-08 66.2 -0.2 20 269-288 44-63 (195)
232 3cmw_A Protein RECA, recombina 96.5 0.017 5.9E-07 73.8 14.2 122 264-390 729-868 (1706)
233 2dy1_A Elongation factor G; tr 96.5 0.0025 8.7E-08 74.9 6.2 42 346-393 97-138 (665)
234 2b8t_A Thymidine kinase; deoxy 96.4 0.0032 1.1E-07 64.0 5.9 124 266-403 11-149 (223)
235 3tqc_A Pantothenate kinase; bi 96.4 0.0015 5.1E-08 70.1 3.6 20 269-288 93-112 (321)
236 2qz4_A Paraplegin; AAA+, SPG7, 96.4 0.012 4.2E-07 59.7 10.1 21 269-289 40-60 (262)
237 1ega_A Protein (GTP-binding pr 96.4 0.0096 3.3E-07 62.9 9.6 64 332-400 101-169 (301)
238 2f1r_A Molybdopterin-guanine d 96.4 0.00057 1.9E-08 66.6 0.0 20 269-288 3-22 (171)
239 3cmw_A Protein RECA, recombina 96.3 0.021 7.2E-07 73.1 14.0 122 264-391 380-520 (1706)
240 1svm_A Large T antigen; AAA+ f 96.3 0.00086 2.9E-08 73.5 1.2 29 259-288 161-189 (377)
241 4eaq_A DTMP kinase, thymidylat 96.3 0.014 4.8E-07 59.1 10.2 22 266-288 25-46 (229)
242 1sxj_D Activator 1 41 kDa subu 96.3 0.0072 2.5E-07 64.2 8.3 43 347-392 132-174 (353)
243 2q6t_A DNAB replication FORK h 96.3 0.019 6.5E-07 64.0 11.9 117 264-389 197-318 (444)
244 1jjv_A Dephospho-COA kinase; P 96.3 0.0018 6.3E-08 63.8 3.1 20 269-288 3-22 (206)
245 2qt1_A Nicotinamide riboside k 96.2 0.0019 6.4E-08 63.9 2.8 24 264-288 18-41 (207)
246 2if2_A Dephospho-COA kinase; a 96.2 0.0021 7.2E-08 63.2 3.1 19 270-288 3-21 (204)
247 3dm5_A SRP54, signal recogniti 96.2 0.035 1.2E-06 61.9 13.2 103 269-376 101-210 (443)
248 3d8b_A Fidgetin-like protein 1 96.2 0.013 4.4E-07 63.4 9.6 20 269-288 118-137 (357)
249 4b4t_K 26S protease regulatory 96.1 0.02 6.8E-07 63.6 10.9 99 269-392 207-322 (428)
250 1y63_A LMAJ004144AAA protein; 96.1 0.0023 8E-08 62.2 2.9 29 259-288 2-30 (184)
251 2chg_A Replication factor C sm 96.1 0.034 1.1E-06 54.0 11.4 19 270-288 40-58 (226)
252 3cmu_A Protein RECA, recombina 96.1 0.03 1E-06 72.5 13.7 120 264-390 1424-1563(2050)
253 4b4t_L 26S protease subunit RP 96.1 0.028 9.4E-07 62.7 11.7 100 269-393 216-332 (437)
254 1cke_A CK, MSSA, protein (cyti 96.1 0.0027 9.1E-08 63.4 3.2 20 269-288 6-25 (227)
255 2p67_A LAO/AO transport system 96.1 0.00032 1.1E-08 75.7 -3.9 41 247-288 34-76 (341)
256 2f9l_A RAB11B, member RAS onco 96.0 0.0031 1.1E-07 61.6 3.3 19 270-288 7-25 (199)
257 4ad8_A DNA repair protein RECN 96.0 0.0016 5.5E-08 74.2 1.3 31 259-291 53-83 (517)
258 2pez_A Bifunctional 3'-phospho 96.0 0.0036 1.2E-07 60.3 3.6 22 266-288 4-25 (179)
259 2zts_A Putative uncharacterize 95.9 0.037 1.3E-06 55.4 11.1 46 346-391 133-182 (251)
260 3cr8_A Sulfate adenylyltranfer 95.9 0.0017 5.9E-08 74.6 1.1 25 263-288 365-389 (552)
261 2orv_A Thymidine kinase; TP4A 95.9 0.032 1.1E-06 56.8 10.2 127 259-404 11-150 (234)
262 3cmu_A Protein RECA, recombina 95.8 0.047 1.6E-06 70.9 13.7 123 264-391 380-520 (2050)
263 3syl_A Protein CBBX; photosynt 95.8 0.0095 3.2E-07 62.3 6.2 21 269-289 68-88 (309)
264 3co5_A Putative two-component 95.8 0.015 5.2E-07 54.1 7.0 88 269-390 28-115 (143)
265 4b4t_J 26S protease regulatory 95.8 0.019 6.4E-07 63.3 8.6 99 269-393 183-299 (405)
266 3n70_A Transport activator; si 95.8 0.015 5E-07 54.3 6.7 20 269-288 25-44 (145)
267 1q57_A DNA primase/helicase; d 95.8 0.033 1.1E-06 63.0 10.8 126 264-392 239-405 (503)
268 1xwi_A SKD1 protein; VPS4B, AA 95.7 0.044 1.5E-06 58.3 11.1 20 269-288 46-65 (322)
269 2qor_A Guanylate kinase; phosp 95.7 0.0039 1.3E-07 61.6 2.7 24 264-288 9-32 (204)
270 3pfi_A Holliday junction ATP-d 95.7 0.024 8.2E-07 60.1 8.8 20 269-288 56-75 (338)
271 3hu3_A Transitional endoplasmi 95.6 0.026 9E-07 63.8 9.3 20 269-288 239-258 (489)
272 4b4t_M 26S protease regulatory 95.6 0.037 1.3E-06 61.6 9.9 20 269-288 216-235 (434)
273 3t61_A Gluconokinase; PSI-biol 95.5 0.0055 1.9E-07 60.2 2.6 20 269-288 19-38 (202)
274 3bgw_A DNAB-like replicative h 95.4 0.04 1.4E-06 61.5 9.8 119 264-389 194-318 (444)
275 2qp9_X Vacuolar protein sortin 95.4 0.044 1.5E-06 59.2 9.5 20 269-288 85-104 (355)
276 1w5s_A Origin recognition comp 95.3 0.023 7.9E-07 61.6 7.2 87 269-359 51-149 (412)
277 3cm0_A Adenylate kinase; ATP-b 95.3 0.0088 3E-07 57.6 3.3 22 266-288 3-24 (186)
278 1sxj_A Activator 1 95 kDa subu 95.3 0.026 9E-07 64.1 7.8 20 269-288 78-97 (516)
279 1hqc_A RUVB; extended AAA-ATPa 95.3 0.032 1.1E-06 58.5 7.9 21 269-289 39-59 (324)
280 3eie_A Vacuolar protein sortin 95.3 0.048 1.6E-06 57.8 9.3 20 269-288 52-71 (322)
281 4b4t_H 26S protease regulatory 95.2 0.067 2.3E-06 59.8 10.3 99 269-392 244-359 (467)
282 4b4t_I 26S protease regulatory 95.1 0.072 2.5E-06 59.0 10.4 99 269-393 217-333 (437)
283 2www_A Methylmalonic aciduria 95.1 0.008 2.7E-07 65.0 2.7 20 269-288 75-94 (349)
284 1d2n_A N-ethylmaleimide-sensit 95.1 0.057 2E-06 55.5 9.1 21 269-289 65-85 (272)
285 2qag_A Septin-2, protein NEDD5 95.1 0.0044 1.5E-07 67.4 0.7 40 242-288 16-57 (361)
286 1ypw_A Transitional endoplasmi 95.1 0.0023 7.8E-08 76.9 -1.8 27 261-288 505-531 (806)
287 3ice_A Transcription terminati 95.1 0.0051 1.7E-07 67.3 1.1 46 242-288 132-194 (422)
288 2yvu_A Probable adenylyl-sulfa 95.1 0.012 4.2E-07 56.9 3.6 23 265-288 11-33 (186)
289 3vfd_A Spastin; ATPase, microt 95.0 0.076 2.6E-06 57.8 10.2 20 269-288 149-168 (389)
290 3kb2_A SPBC2 prophage-derived 95.0 0.011 3.8E-07 55.8 3.1 20 269-288 2-21 (173)
291 3t34_A Dynamin-related protein 95.0 0.071 2.4E-06 57.4 9.8 26 259-288 29-54 (360)
292 1m7g_A Adenylylsulfate kinase; 94.8 0.013 4.3E-07 58.2 3.1 24 264-288 22-45 (211)
293 3lw7_A Adenylate kinase relate 94.8 0.015 5E-07 54.7 3.2 20 269-288 2-21 (179)
294 1q3t_A Cytidylate kinase; nucl 94.7 0.016 5.5E-07 58.6 3.4 23 265-288 14-36 (236)
295 2qby_B CDC6 homolog 3, cell di 94.6 0.023 8E-07 61.0 4.8 20 269-288 46-65 (384)
296 2bjv_A PSP operon transcriptio 94.6 0.051 1.8E-06 55.6 7.1 21 269-289 30-50 (265)
297 1ex7_A Guanylate kinase; subst 94.6 0.014 4.8E-07 57.5 2.7 20 269-288 2-21 (186)
298 2zan_A Vacuolar protein sortin 94.6 0.052 1.8E-06 60.5 7.6 20 269-288 168-187 (444)
299 2wji_A Ferrous iron transport 94.6 0.018 6.1E-07 54.4 3.3 20 269-288 4-23 (165)
300 1vht_A Dephospho-COA kinase; s 94.6 0.019 6.5E-07 57.0 3.6 20 269-288 5-24 (218)
301 1jr3_A DNA polymerase III subu 94.6 0.039 1.3E-06 58.9 6.4 20 269-288 39-58 (373)
302 1np6_A Molybdopterin-guanine d 94.6 0.017 5.9E-07 56.2 3.2 20 269-288 7-26 (174)
303 1ojl_A Transcriptional regulat 94.5 0.048 1.7E-06 57.6 6.8 21 269-289 26-46 (304)
304 1xx6_A Thymidine kinase; NESG, 94.5 0.054 1.8E-06 53.5 6.7 121 266-403 7-141 (191)
305 3pvs_A Replication-associated 94.5 0.1 3.6E-06 58.2 9.8 19 270-288 52-70 (447)
306 2ze6_A Isopentenyl transferase 94.4 0.02 6.9E-07 58.8 3.4 20 269-288 2-21 (253)
307 2rhm_A Putative kinase; P-loop 94.3 0.021 7.2E-07 55.0 3.3 22 266-288 4-25 (193)
308 1qhx_A CPT, protein (chloramph 94.3 0.022 7.5E-07 54.3 3.3 20 269-288 4-23 (178)
309 2ohf_A Protein OLA1, GTP-bindi 94.3 0.034 1.2E-06 61.2 5.2 23 265-288 20-42 (396)
310 3pxi_A Negative regulator of g 94.3 0.38 1.3E-05 57.1 14.7 21 269-289 202-222 (758)
311 2a5y_B CED-4; apoptosis; HET: 94.3 0.19 6.4E-06 57.4 11.5 118 268-396 152-280 (549)
312 2gj8_A MNME, tRNA modification 94.3 0.024 8E-07 54.1 3.4 20 269-288 5-24 (172)
313 1ly1_A Polynucleotide kinase; 94.3 0.024 8.1E-07 53.9 3.4 20 269-288 3-22 (181)
314 3u61_B DNA polymerase accessor 94.2 0.14 4.8E-06 53.8 9.7 20 269-288 49-68 (324)
315 1iqp_A RFCS; clamp loader, ext 94.2 0.075 2.6E-06 55.4 7.5 19 270-288 48-66 (327)
316 2j9r_A Thymidine kinase; TK1, 94.2 0.15 5E-06 51.4 9.2 123 265-404 26-162 (214)
317 1kht_A Adenylate kinase; phosp 94.2 0.024 8.1E-07 54.5 3.3 20 269-288 4-23 (192)
318 2wjg_A FEOB, ferrous iron tran 94.1 0.025 8.5E-07 54.0 3.3 20 269-288 8-27 (188)
319 1via_A Shikimate kinase; struc 94.1 0.023 8E-07 54.3 3.0 19 270-288 6-24 (175)
320 1g5t_A COB(I)alamin adenosyltr 94.0 0.29 9.9E-06 48.5 10.8 64 339-406 109-180 (196)
321 2jaq_A Deoxyguanosine kinase; 94.0 0.026 9E-07 54.7 3.2 19 270-288 2-20 (205)
322 2iut_A DNA translocase FTSK; n 93.9 0.03 1E-06 64.2 3.9 29 259-288 206-234 (574)
323 1qvr_A CLPB protein; coiled co 93.9 0.072 2.5E-06 64.3 7.4 22 269-290 589-610 (854)
324 2p5t_B PEZT; postsegregational 93.9 0.022 7.4E-07 58.4 2.4 23 265-288 30-52 (253)
325 2zej_A Dardarin, leucine-rich 93.8 0.029 1E-06 53.8 3.1 19 270-288 4-22 (184)
326 1uf9_A TT1252 protein; P-loop, 93.8 0.033 1.1E-06 54.1 3.5 20 269-288 9-28 (203)
327 1gvn_B Zeta; postsegregational 93.8 0.029 1E-06 58.8 3.3 22 266-288 32-53 (287)
328 2v54_A DTMP kinase, thymidylat 93.5 0.037 1.3E-06 53.8 3.3 22 266-288 3-24 (204)
329 3r20_A Cytidylate kinase; stru 93.5 0.036 1.2E-06 56.5 3.2 20 269-288 10-29 (233)
330 1gtv_A TMK, thymidylate kinase 93.4 0.018 6.2E-07 56.6 0.9 19 270-288 2-20 (214)
331 1tev_A UMP-CMP kinase; ploop, 93.4 0.043 1.5E-06 52.7 3.5 20 269-288 4-23 (196)
332 2z0h_A DTMP kinase, thymidylat 93.4 0.039 1.3E-06 53.3 3.2 19 270-288 2-20 (197)
333 3iij_A Coilin-interacting nucl 93.4 0.036 1.2E-06 53.2 2.8 20 269-288 12-31 (180)
334 1nks_A Adenylate kinase; therm 93.3 0.042 1.4E-06 52.7 3.3 20 269-288 2-21 (194)
335 3cf2_A TER ATPase, transitiona 93.3 0.16 5.3E-06 60.8 8.6 100 269-392 239-351 (806)
336 2plr_A DTMP kinase, probable t 93.3 0.047 1.6E-06 53.2 3.6 20 269-288 5-24 (213)
337 3ake_A Cytidylate kinase; CMP 93.2 0.042 1.4E-06 53.6 3.2 19 270-288 4-22 (208)
338 2c95_A Adenylate kinase 1; tra 93.2 0.046 1.6E-06 52.7 3.4 22 266-288 8-29 (196)
339 2vli_A Antibiotic resistance p 93.0 0.039 1.3E-06 52.8 2.4 20 269-288 6-25 (183)
340 2wwf_A Thymidilate kinase, put 93.0 0.053 1.8E-06 53.1 3.4 22 266-288 9-30 (212)
341 3e1s_A Exodeoxyribonuclease V, 92.9 0.036 1.2E-06 63.9 2.4 45 586-632 435-486 (574)
342 2qen_A Walker-type ATPase; unk 92.8 0.22 7.4E-06 52.2 8.2 21 267-288 31-51 (350)
343 3trf_A Shikimate kinase, SK; a 92.8 0.053 1.8E-06 52.0 3.2 20 269-288 6-25 (185)
344 2dby_A GTP-binding protein; GD 92.8 0.075 2.6E-06 57.9 4.7 19 270-288 3-21 (368)
345 1nn5_A Similar to deoxythymidy 92.7 0.058 2E-06 52.9 3.3 23 265-288 7-29 (215)
346 1xjc_A MOBB protein homolog; s 92.7 0.059 2E-06 52.2 3.2 20 269-288 5-24 (169)
347 1w36_D RECD, exodeoxyribonucle 92.6 0.16 5.6E-06 58.8 7.4 20 269-288 165-184 (608)
348 3te6_A Regulatory protein SIR3 92.5 0.4 1.4E-05 51.0 9.8 115 269-393 46-175 (318)
349 1qf9_A UMP/CMP kinase, protein 92.5 0.063 2.2E-06 51.4 3.2 20 269-288 7-26 (194)
350 1w4r_A Thymidine kinase; type 92.4 0.11 3.9E-06 51.4 5.0 107 266-393 19-129 (195)
351 2pbr_A DTMP kinase, thymidylat 92.4 0.065 2.2E-06 51.5 3.1 19 270-288 2-20 (195)
352 3fb4_A Adenylate kinase; psych 92.4 0.064 2.2E-06 52.9 3.2 19 270-288 2-20 (216)
353 1e6c_A Shikimate kinase; phosp 92.3 0.059 2E-06 51.0 2.6 20 269-288 3-22 (173)
354 3a4m_A L-seryl-tRNA(SEC) kinas 92.2 0.076 2.6E-06 54.5 3.6 20 269-288 5-24 (260)
355 2pt5_A Shikimate kinase, SK; a 92.2 0.074 2.5E-06 50.1 3.2 19 270-288 2-20 (168)
356 2qtf_A Protein HFLX, GTP-bindi 92.2 0.064 2.2E-06 58.3 3.0 23 266-288 177-199 (364)
357 1sxj_B Activator 1 37 kDa subu 92.1 0.53 1.8E-05 48.8 10.0 18 271-288 45-62 (323)
358 2ga8_A Hypothetical 39.9 kDa p 92.1 0.028 9.6E-07 60.9 0.2 28 260-288 15-44 (359)
359 2v3c_C SRP54, signal recogniti 92.1 0.23 8E-06 55.1 7.5 21 269-289 100-120 (432)
360 2bwj_A Adenylate kinase 5; pho 92.1 0.075 2.6E-06 51.4 3.1 22 266-288 11-32 (199)
361 3dl0_A Adenylate kinase; phosp 92.0 0.076 2.6E-06 52.4 3.2 19 270-288 2-20 (216)
362 1ukz_A Uridylate kinase; trans 91.9 0.084 2.9E-06 51.5 3.3 20 269-288 16-35 (203)
363 1zd8_A GTP:AMP phosphotransfer 91.9 0.08 2.8E-06 52.9 3.2 20 269-288 8-27 (227)
364 1m2o_B GTP-binding protein SAR 91.9 0.083 2.8E-06 51.0 3.2 28 259-288 16-43 (190)
365 3k53_A Ferrous iron transport 91.7 0.084 2.9E-06 54.4 3.2 20 269-288 4-23 (271)
366 1mky_A Probable GTP-binding pr 91.6 0.084 2.9E-06 58.6 3.3 20 269-288 181-200 (439)
367 2xb4_A Adenylate kinase; ATP-b 91.6 0.09 3.1E-06 52.6 3.2 19 270-288 2-20 (223)
368 2cdn_A Adenylate kinase; phosp 91.5 0.11 3.6E-06 50.8 3.5 20 269-288 21-40 (201)
369 1aky_A Adenylate kinase; ATP:A 91.4 0.1 3.5E-06 51.7 3.4 20 269-288 5-24 (220)
370 3dz8_A RAS-related protein RAB 91.4 0.032 1.1E-06 53.8 -0.4 19 270-288 25-43 (191)
371 1zak_A Adenylate kinase; ATP:A 91.4 0.086 3E-06 52.4 2.8 20 269-288 6-25 (222)
372 1a7j_A Phosphoribulokinase; tr 91.3 0.061 2.1E-06 56.5 1.6 20 269-288 6-25 (290)
373 1z6t_A APAF-1, apoptotic prote 91.2 0.79 2.7E-05 52.2 11.0 116 268-395 147-271 (591)
374 1z2a_A RAS-related protein RAB 91.2 0.12 4.2E-06 47.7 3.5 19 270-288 7-25 (168)
375 4ag6_A VIRB4 ATPase, type IV s 91.2 0.16 5.5E-06 55.2 4.9 20 269-288 36-55 (392)
376 2grj_A Dephospho-COA kinase; T 91.2 0.11 3.7E-06 51.2 3.2 20 269-288 13-32 (192)
377 1a5t_A Delta prime, HOLB; zinc 91.1 1.1 3.7E-05 47.6 11.2 20 269-288 25-44 (334)
378 1uj2_A Uridine-cytidine kinase 91.0 0.11 3.7E-06 52.9 3.2 20 269-288 23-42 (252)
379 1zuh_A Shikimate kinase; alpha 91.0 0.12 4.1E-06 48.8 3.2 20 269-288 8-27 (168)
380 2ged_A SR-beta, signal recogni 91.0 0.12 4.1E-06 49.5 3.2 20 269-288 49-68 (193)
381 2gno_A DNA polymerase III, gam 90.9 0.6 2E-05 49.3 8.9 20 269-288 19-38 (305)
382 1z08_A RAS-related protein RAB 90.9 0.14 4.9E-06 47.5 3.7 19 270-288 8-26 (170)
383 2f6r_A COA synthase, bifunctio 90.9 0.11 3.7E-06 54.2 3.1 22 268-289 75-96 (281)
384 3tw8_B RAS-related protein RAB 90.9 0.14 4.8E-06 47.9 3.6 19 270-288 11-29 (181)
385 1fzq_A ADP-ribosylation factor 90.9 0.11 3.7E-06 49.7 2.8 20 269-288 17-36 (181)
386 2erx_A GTP-binding protein DI- 90.8 0.16 5.5E-06 47.0 3.9 19 270-288 5-23 (172)
387 1r6b_X CLPA protein; AAA+, N-t 90.8 0.68 2.3E-05 54.8 10.2 20 270-289 490-509 (758)
388 1ltq_A Polynucleotide kinase; 90.8 0.12 4.3E-06 53.6 3.4 20 269-288 3-22 (301)
389 2iyv_A Shikimate kinase, SK; t 90.7 0.12 4E-06 49.6 2.9 20 269-288 3-22 (184)
390 1ek0_A Protein (GTP-binding pr 90.7 0.15 5E-06 47.2 3.5 19 270-288 5-23 (170)
391 1z0j_A RAB-22, RAS-related pro 90.7 0.15 5.1E-06 47.2 3.5 19 270-288 8-26 (170)
392 1moz_A ARL1, ADP-ribosylation 90.6 0.087 3E-06 49.8 1.8 20 269-288 19-38 (183)
393 1jal_A YCHF protein; nucleotid 90.5 0.24 8.1E-06 53.8 5.4 20 269-288 3-22 (363)
394 1e4v_A Adenylate kinase; trans 90.5 0.13 4.4E-06 50.9 3.1 19 270-288 2-20 (214)
395 1ky3_A GTP-binding protein YPT 90.3 0.14 4.9E-06 47.9 3.1 20 269-288 9-28 (182)
396 4edh_A DTMP kinase, thymidylat 90.2 0.16 5.5E-06 50.8 3.5 22 266-288 5-26 (213)
397 3tlx_A Adenylate kinase 2; str 90.2 0.16 5.6E-06 51.5 3.6 20 269-288 30-49 (243)
398 1f6b_A SAR1; gtpases, N-termin 90.2 0.11 3.9E-06 50.4 2.4 27 260-288 19-45 (198)
399 2ce2_X GTPase HRAS; signaling 90.2 0.14 4.7E-06 47.0 2.8 19 270-288 5-23 (166)
400 2dyk_A GTP-binding protein; GT 90.2 0.17 5.7E-06 46.5 3.4 19 270-288 3-21 (161)
401 1kao_A RAP2A; GTP-binding prot 90.0 0.15 5.2E-06 46.8 3.0 19 270-288 5-23 (167)
402 1c1y_A RAS-related protein RAP 90.0 0.18 6.3E-06 46.5 3.5 19 270-288 5-23 (167)
403 1u8z_A RAS-related protein RAL 89.9 0.16 5.4E-06 46.8 2.9 19 270-288 6-24 (168)
404 2orw_A Thymidine kinase; TMTK, 89.9 0.17 5.8E-06 49.3 3.3 21 267-288 3-23 (184)
405 3q72_A GTP-binding protein RAD 89.8 0.16 5.3E-06 47.1 2.8 19 270-288 4-22 (166)
406 1wms_A RAB-9, RAB9, RAS-relate 89.7 0.16 5.6E-06 47.5 3.0 19 270-288 9-27 (177)
407 2yc2_C IFT27, small RAB-relate 89.7 0.13 4.4E-06 49.6 2.2 19 270-288 22-40 (208)
408 3v9p_A DTMP kinase, thymidylat 89.7 0.14 4.8E-06 51.9 2.6 23 265-288 23-45 (227)
409 3pxi_A Negative regulator of g 89.7 1.1 3.6E-05 53.2 10.6 21 270-290 523-543 (758)
410 2cxx_A Probable GTP-binding pr 89.7 0.2 6.8E-06 47.5 3.5 19 270-288 3-21 (190)
411 2lkc_A Translation initiation 89.7 0.18 6.2E-06 47.2 3.2 20 269-288 9-28 (178)
412 3bc1_A RAS-related protein RAB 89.6 0.2 6.8E-06 47.4 3.5 19 270-288 13-31 (195)
413 3q85_A GTP-binding protein REM 89.6 0.17 5.7E-06 47.0 2.9 19 270-288 4-22 (169)
414 1r6b_X CLPA protein; AAA+, N-t 89.6 0.092 3.2E-06 62.3 1.3 21 269-289 208-228 (758)
415 1g16_A RAS-related protein SEC 89.6 0.16 5.6E-06 46.9 2.8 19 270-288 5-23 (170)
416 2nzj_A GTP-binding protein REM 89.6 0.17 5.9E-06 47.1 3.0 19 270-288 6-24 (175)
417 3clv_A RAB5 protein, putative; 89.5 0.21 7.3E-06 47.5 3.6 19 270-288 9-27 (208)
418 2y8e_A RAB-protein 6, GH09086P 89.5 0.21 7.1E-06 46.7 3.5 19 270-288 16-34 (179)
419 3b1v_A Ferrous iron uptake tra 89.4 0.19 6.4E-06 52.2 3.3 20 269-288 4-23 (272)
420 1r2q_A RAS-related protein RAB 89.4 0.22 7.5E-06 46.0 3.5 19 270-288 8-26 (170)
421 1upt_A ARL1, ADP-ribosylation 89.3 0.18 6.2E-06 46.8 2.9 20 269-288 8-27 (171)
422 3be4_A Adenylate kinase; malar 89.3 0.2 6.8E-06 49.7 3.4 20 269-288 6-25 (217)
423 2oil_A CATX-8, RAS-related pro 89.2 0.23 7.7E-06 47.6 3.6 19 270-288 27-45 (193)
424 3lv8_A DTMP kinase, thymidylat 89.2 0.2 6.8E-06 51.1 3.3 22 266-288 26-47 (236)
425 1svi_A GTP-binding protein YSX 89.1 0.19 6.3E-06 48.1 2.9 20 269-288 24-43 (195)
426 3pqc_A Probable GTP-binding pr 89.0 0.19 6.4E-06 47.8 2.9 20 269-288 24-43 (195)
427 2bme_A RAB4A, RAS-related prot 89.0 0.22 7.4E-06 47.1 3.2 19 270-288 12-30 (186)
428 4tmk_A Protein (thymidylate ki 89.0 0.21 7.3E-06 49.9 3.3 22 266-288 2-23 (213)
429 2fn4_A P23, RAS-related protei 88.9 0.2 6.8E-06 46.9 2.9 20 269-288 10-29 (181)
430 3zvl_A Bifunctional polynucleo 88.8 0.21 7.2E-06 55.0 3.5 20 269-288 259-278 (416)
431 4dsu_A GTPase KRAS, isoform 2B 88.8 0.21 7.1E-06 47.2 3.0 19 270-288 6-24 (189)
432 3t1o_A Gliding protein MGLA; G 88.8 0.18 6E-06 48.0 2.5 19 270-288 16-34 (198)
433 2efe_B Small GTP-binding prote 88.8 0.25 8.6E-06 46.3 3.5 19 270-288 14-32 (181)
434 4dcu_A GTP-binding protein ENG 88.8 0.26 8.9E-06 54.9 4.2 20 269-288 24-43 (456)
435 3d3q_A TRNA delta(2)-isopenten 88.7 0.22 7.4E-06 53.6 3.3 20 269-288 8-27 (340)
436 3ihw_A Centg3; RAS, centaurin, 88.6 0.21 7.3E-06 47.8 3.0 19 270-288 22-40 (184)
437 3tkl_A RAS-related protein RAB 88.6 0.26 8.9E-06 47.0 3.5 19 270-288 18-36 (196)
438 1vg8_A RAS-related protein RAB 88.6 0.26 9E-06 47.5 3.6 20 269-288 9-28 (207)
439 2a9k_A RAS-related protein RAL 88.5 0.22 7.5E-06 46.9 2.9 20 269-288 19-38 (187)
440 1r8s_A ADP-ribosylation factor 88.5 0.22 7.7E-06 45.9 2.9 18 271-288 3-20 (164)
441 2ocp_A DGK, deoxyguanosine kin 88.5 0.26 8.7E-06 49.7 3.5 20 269-288 3-22 (241)
442 2h92_A Cytidylate kinase; ross 88.4 0.2 6.8E-06 49.4 2.6 20 269-288 4-23 (219)
443 2ew1_A RAS-related protein RAB 88.4 0.25 8.6E-06 48.3 3.3 19 270-288 28-46 (201)
444 1m7b_A RND3/RHOE small GTP-bin 88.4 0.26 8.9E-06 46.9 3.4 19 270-288 9-27 (184)
445 3sfz_A APAF-1, apoptotic pepti 88.4 3.4 0.00012 50.9 14.3 115 267-394 146-270 (1249)
446 1z0f_A RAB14, member RAS oncog 88.4 0.23 7.9E-06 46.4 2.9 20 269-288 16-35 (179)
447 3crm_A TRNA delta(2)-isopenten 88.3 0.25 8.4E-06 52.8 3.4 20 269-288 6-25 (323)
448 2hxs_A RAB-26, RAS-related pro 88.3 0.24 8.2E-06 46.4 3.0 19 270-288 8-26 (178)
449 3umf_A Adenylate kinase; rossm 88.2 0.25 8.4E-06 49.7 3.2 23 265-288 27-49 (217)
450 3kkq_A RAS-related protein M-R 88.1 0.24 8.3E-06 46.7 2.9 19 270-288 20-38 (183)
451 1nrj_B SR-beta, signal recogni 88.1 0.26 8.8E-06 48.2 3.2 20 269-288 13-32 (218)
452 3con_A GTPase NRAS; structural 88.0 0.24 8.4E-06 47.1 2.9 19 270-288 23-41 (190)
453 2fg5_A RAB-22B, RAS-related pr 88.0 0.3 1E-05 46.8 3.5 19 270-288 25-43 (192)
454 2g6b_A RAS-related protein RAB 87.9 0.26 8.8E-06 46.2 2.9 19 270-288 12-30 (180)
455 3exa_A TRNA delta(2)-isopenten 87.9 0.29 1E-05 52.1 3.6 20 269-288 4-23 (322)
456 3ld9_A DTMP kinase, thymidylat 87.9 0.3 1E-05 49.3 3.6 23 265-288 19-41 (223)
457 3cbq_A GTP-binding protein REM 87.8 0.25 8.5E-06 47.9 2.8 20 269-288 24-43 (195)
458 2bov_A RAla, RAS-related prote 87.7 0.26 8.9E-06 47.4 2.9 20 269-288 15-34 (206)
459 3nbx_X ATPase RAVA; AAA+ ATPas 87.7 0.38 1.3E-05 54.4 4.7 22 269-290 42-63 (500)
460 1ak2_A Adenylate kinase isoenz 87.6 0.31 1E-05 48.9 3.5 20 269-288 17-36 (233)
461 3t5g_A GTP-binding protein RHE 87.6 0.26 9E-06 46.4 2.8 20 269-288 7-26 (181)
462 2wsm_A Hydrogenase expression/ 87.6 0.3 1E-05 48.0 3.3 20 269-288 31-50 (221)
463 1mh1_A RAC1; GTP-binding, GTPa 87.5 0.28 9.4E-06 46.2 2.9 19 270-288 7-25 (186)
464 1ksh_A ARF-like protein 2; sma 87.5 0.28 9.6E-06 46.5 2.9 20 269-288 19-38 (186)
465 1z06_A RAS-related protein RAB 87.5 0.34 1.2E-05 46.2 3.5 20 269-288 21-40 (189)
466 3iev_A GTP-binding protein ERA 87.4 0.27 9.2E-06 51.8 3.0 20 269-288 11-30 (308)
467 3foz_A TRNA delta(2)-isopenten 87.3 0.31 1.1E-05 51.8 3.4 20 269-288 11-30 (316)
468 3reg_A RHO-like small GTPase; 87.3 0.34 1.2E-05 46.4 3.5 19 270-288 25-43 (194)
469 2gf0_A GTP-binding protein DI- 87.3 0.29 9.8E-06 46.8 2.9 20 269-288 9-28 (199)
470 2bcg_Y Protein YP2, GTP-bindin 87.2 0.34 1.2E-05 46.9 3.4 19 270-288 10-28 (206)
471 1zbd_A Rabphilin-3A; G protein 87.1 0.4 1.4E-05 46.2 3.9 19 270-288 10-28 (203)
472 3cph_A RAS-related protein SEC 87.1 0.36 1.2E-05 46.8 3.5 20 269-288 21-40 (213)
473 3llu_A RAS-related GTP-binding 87.1 0.3 1E-05 47.1 2.9 20 269-288 21-40 (196)
474 3tmk_A Thymidylate kinase; pho 87.0 0.33 1.1E-05 48.7 3.3 22 266-288 4-25 (216)
475 2gf9_A RAS-related protein RAB 87.0 0.3 1E-05 46.5 2.9 19 270-288 24-42 (189)
476 2o52_A RAS-related protein RAB 86.9 0.3 1E-05 47.3 2.8 19 270-288 27-45 (200)
477 2j37_W Signal recognition part 86.9 2.7 9.1E-05 47.5 11.0 21 269-289 102-122 (504)
478 1zd9_A ADP-ribosylation factor 86.8 0.39 1.3E-05 45.9 3.5 20 269-288 23-42 (188)
479 3sr0_A Adenylate kinase; phosp 86.8 0.34 1.2E-05 48.2 3.2 19 270-288 2-20 (206)
480 2il1_A RAB12; G-protein, GDP, 86.7 0.32 1.1E-05 46.7 2.9 19 270-288 28-46 (192)
481 2a5j_A RAS-related protein RAB 86.7 0.33 1.1E-05 46.5 2.9 19 270-288 23-41 (191)
482 3bwd_D RAC-like GTP-binding pr 86.6 0.33 1.1E-05 45.5 2.9 19 270-288 10-28 (182)
483 2qmh_A HPR kinase/phosphorylas 86.6 0.5 1.7E-05 47.1 4.2 22 266-288 33-54 (205)
484 3oes_A GTPase rhebl1; small GT 86.6 0.38 1.3E-05 46.5 3.3 20 269-288 25-44 (201)
485 1zj6_A ADP-ribosylation factor 86.6 0.32 1.1E-05 46.2 2.8 20 269-288 17-36 (187)
486 3lxw_A GTPase IMAP family memb 86.5 0.36 1.2E-05 49.0 3.3 20 269-288 22-41 (247)
487 1x3s_A RAS-related protein RAB 86.4 0.34 1.2E-05 46.0 2.9 19 270-288 17-35 (195)
488 2aka_B Dynamin-1; fusion prote 86.4 3.7 0.00013 42.1 11.0 20 269-288 27-46 (299)
489 1wf3_A GTP-binding protein; GT 86.3 0.36 1.2E-05 50.8 3.3 20 269-288 8-27 (301)
490 2h57_A ADP-ribosylation factor 86.3 0.29 1E-05 46.7 2.4 20 269-288 22-41 (190)
491 4bas_A ADP-ribosylation factor 86.2 0.36 1.2E-05 46.1 3.0 20 269-288 18-37 (199)
492 2atv_A RERG, RAS-like estrogen 86.2 0.36 1.2E-05 46.4 3.0 20 269-288 29-48 (196)
493 1gwn_A RHO-related GTP-binding 86.2 0.41 1.4E-05 46.9 3.4 19 270-288 30-48 (205)
494 3hjn_A DTMP kinase, thymidylat 86.2 0.99 3.4E-05 44.3 6.2 19 270-288 2-20 (197)
495 2hf9_A Probable hydrogenase ni 86.0 0.38 1.3E-05 47.4 3.1 20 269-288 39-58 (226)
496 2cjw_A GTP-binding protein GEM 86.0 0.37 1.3E-05 46.5 2.9 19 270-288 8-26 (192)
497 1nz9_A Transcription antitermi 86.0 1.9 6.4E-05 33.8 6.5 46 586-631 4-55 (58)
498 2b6h_A ADP-ribosylation factor 86.0 0.36 1.2E-05 46.5 2.8 20 269-288 30-49 (192)
499 3iby_A Ferrous iron transport 86.0 0.38 1.3E-05 49.3 3.2 19 270-288 3-21 (256)
500 2p5s_A RAS and EF-hand domain 85.9 0.37 1.3E-05 46.5 2.9 20 269-288 29-48 (199)
No 1
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=100.00 E-value=2.6e-57 Score=541.04 Aligned_cols=396 Identities=23% Similarity=0.304 Sum_probs=342.4
Q ss_pred cchhHHHHHhcCCChHHHHHHHhcccccC-------CCeecCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004463 12 RYSPLLELLKNCNFLTELEEKIGFCIDCK-------LLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGID 84 (752)
Q Consensus 12 ~~~~l~~~~~~l~~~~~l~~~i~~~i~~~-------~~~i~d~as~~L~~ir~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 84 (752)
..|.|..+...+.+++++.+.|+++|+++ |+.|+|++|++|+++|+.+++..+|+.+++.+... .. +
T Consensus 386 ~~~~L~~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~I~~g~~~eLd~lr~~~~~~~~~l~~~~~~~~~-~~---~-- 459 (800)
T 1wb9_A 386 DSAPVQALREKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERE-RT---G-- 459 (800)
T ss_dssp CCHHHHHHHHHHCCCHHHHHHHHHHBCSSCCSCSTTCCCBCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---T--
T ss_pred CcHHHHHHHHhcccHHHHHHHHHHHhCcCchhhhhcCCeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---C--
Confidence 46889999999999999999999999976 36899999999999999999999999988766432 12 2
Q ss_pred CceeEEecCe---EEEEEecccccCCCCcEEEEEcCCCCEEEecccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Q 004463 85 KPLITKRRSR---MCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKS 161 (752)
Q Consensus 85 ~~~i~~r~~r---~vl~vk~~~~~~~~~g~v~~~s~sg~t~y~ep~~~v~lnn~~~~l~~~e~~ee~~il~~l~~~i~~~ 161 (752)
...++++++| |+|+|+.++...+|.||+|++|.+|.++|++|. +.++|+++.+++.++..++.+|+.+|...+..+
T Consensus 460 ~~~l~i~~~~~~gy~i~V~~~~~~~vp~~~i~~~s~~~~~~f~tp~-l~~l~~~i~~~~~~~~~~e~~i~~~l~~~~~~~ 538 (800)
T 1wb9_A 460 LDTLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPE-LKEYEDKVLTSKGKALALEKQLYEELFDLLLPH 538 (800)
T ss_dssp CTTCEEEEETTTEEEEEEEHHHHTTSCTTCEEEEECSSEEEEECHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CCceEEEecCcceEEEEEeccccccCCcceEEeeeccCCCEEeCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345555555 999999999999999999999999999999997 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCCCCCcceeeEccccCCccccccccccccccCCCCCCCCccCC
Q 004463 162 EREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVEN 241 (752)
Q Consensus 162 ~~~l~~~~~~~~~lD~l~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~ 241 (752)
...+..+.+++++||+++|+|.+|.+++||+|.|++++ .+.|+++|||++... .
T Consensus 539 ~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~------~i~i~~~rHP~le~~-~------------------- 592 (800)
T 1wb9_A 539 LEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKP------GIRITEGRHPVVEQV-L------------------- 592 (800)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCEECSSS------CEEEEEECCTTHHHH-C-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccEECCCC------CEEEEeccccEEEcc-C-------------------
Confidence 99999999999999999999999999999999998754 599999999998421 0
Q ss_pred CeEEEcccccccCCeeEeeeEEE-ccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcC
Q 004463 242 SEMTVGSLSKGISDFPVPIDIKV-ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIG 320 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v~idl~l-~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig 320 (752)
++.++++|+++ ++| ++++|+||||||||||||+++.+.+|+++|.++|+.. ..++++++++.+++
T Consensus 593 ------------~~~~vlndisl~~~g-~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~-~~i~~~~~i~~~~~ 658 (800)
T 1wb9_A 593 ------------NEPFIANPLNLSPQR-RMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQK-VEIGPIDRIFTRVG 658 (800)
T ss_dssp ------------SSCCCCEEEEECSSS-CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSE-EEECCCCEEEEEEC
T ss_pred ------------CCceeeecccccCCC-cEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhc-ccceeHHHHHhhCC
Confidence 01245444444 466 8999999999999999999999999999999999875 56777888889999
Q ss_pred CchhhhcCcccchHHHHHHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhcc
Q 004463 321 DHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDK 399 (752)
Q Consensus 321 ~~~~i~~~~stlSgg~krl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~l~~~a~~ 399 (752)
..+++..+.|+||++|++++.++..+++|+||||||||+|||+.++.+++.++++++.+ .|+++|++|||+++..+|++
T Consensus 659 ~~d~l~~~~stf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~ 738 (800)
T 1wb9_A 659 AADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEK 738 (800)
T ss_dssp -----------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999998889999988 48999999999999899999
Q ss_pred cccccCCceeeccC--ccccchhhccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHh
Q 004463 400 DTRFENAATEFSLE--TLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVER 454 (752)
Q Consensus 400 ~~~i~~g~v~~~~~--~l~~~Y~l~~g~~~~s~a~~ia~~~g~p~~ii~~A~~~~~~ 454 (752)
...+.|++|.++.. .+.++|++..|.++.|||+++|+++|+|++|+++|++.+..
T Consensus 739 ~~~v~n~~~~~~~~~~~l~~~ykl~~G~~~~S~gi~vA~~~GlP~~vi~rA~~~l~~ 795 (800)
T 1wb9_A 739 MEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRE 795 (800)
T ss_dssp STTEEEEEEEEEEETTEEEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hhceEEEEEEEEEcCCcEEEEEEEEECCCCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999988754 59999999999999999999999999999999999988764
No 2
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=100.00 E-value=9.5e-52 Score=490.68 Aligned_cols=389 Identities=24% Similarity=0.340 Sum_probs=331.2
Q ss_pred chhHHHHH---hcCCChHHHHHHHhcccccC-------CCeecCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004463 13 YSPLLELL---KNCNFLTELEEKIGFCIDCK-------LLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGG 82 (752)
Q Consensus 13 ~~~l~~~~---~~l~~~~~l~~~i~~~i~~~-------~~~i~d~as~~L~~ir~~~~~~~~~l~~~l~~~~~~~~~~~~ 82 (752)
.|.+..++ ..+.+++++.+.|.++|+++ ++.|+|++|++|+++|+.+++..+||.++..+.... .+
T Consensus 359 ~~~l~~~l~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~----~~ 434 (765)
T 1ewq_A 359 LPELRALLGEEVGLPDLSPLKEELEAALVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFLELEERERER----TG 434 (765)
T ss_dssp HHHHHHHHCTTSCCCCCHHHHHHHHHHBCSSCCSCTTSSCCBCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HC
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhccCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----cC
Confidence 34555543 37788999999999999865 457999999999999999999989998887654332 23
Q ss_pred CCCceeEEecC---eEEEEEecccccCCCCcEEEEEcCCCCEEEecccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004463 83 IDKPLITKRRS---RMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIA 159 (752)
Q Consensus 83 ~~~~~i~~r~~---r~vl~vk~~~~~~~~~g~v~~~s~sg~t~y~ep~~~v~lnn~~~~l~~~e~~ee~~il~~l~~~i~ 159 (752)
+. .++++.+ +|+|+|+..+...+|+.|++.+|.+|.++|++|. +.++|+++.++..++..++.+|+.+|.+.+.
T Consensus 435 ~~--~l~i~~~~~~gy~i~v~~~~~~~vp~~~i~~~s~~~~~rf~tp~-l~el~~~i~~~~~~~~~~e~~i~~~L~~~i~ 511 (765)
T 1ewq_A 435 IP--TLKVGYNAVFGYYLEVTRPYYERVPKEYRPVQTLKDRQRYTLPE-MKEKEREVYRLEALIRRREEEVFLEVRERAK 511 (765)
T ss_dssp CT--TCEEEEETTTEEEEEEEGGGGGGSCTTCEEEEECSSEEEEECHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC--ceEEEeccceeEEEEeehHhhhcCCcceEEEEeccCCcEEECHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 3445555 4999999999999997799999999999999997 9999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCCCCCcceeeEccccCCccccccccccccccCCCCCCCCcc
Q 004463 160 KSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDV 239 (752)
Q Consensus 160 ~~~~~l~~~~~~~~~lD~l~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~~~~ 239 (752)
.+...+..+.+++++||+++|+|.+|..+++|+|.+ .. .+.++++|||++.. .
T Consensus 512 ~~~~~l~~~~~~la~LD~l~s~a~~a~~~~~~~P~~-~~-------~i~i~~~rHP~le~---~---------------- 564 (765)
T 1ewq_A 512 RQAEALREAARILAELDVYAALAEVAVRYGYVRPRF-GD-------RLQIRAGRHPVVER---R---------------- 564 (765)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBCCEE-SS-------SEEEEEECCTTGGG---T----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhCCceeecc-CC-------cEEEEEeECceEcc---C----------------
Confidence 999999999999999999999999999999999999 32 59999999999841 0
Q ss_pred CCCeEEEcccccccCCeeEeeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHc
Q 004463 240 ENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADI 319 (752)
Q Consensus 240 g~~~l~~~~ls~~y~~~~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~i 319 (752)
+.+|++|+++. | ++++|+||||||||||||+++.+.+|+++|.++|+.. ..++++++++.++
T Consensus 565 ---------------~~~vl~disl~-g-~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~-~~i~~v~~i~~~~ 626 (765)
T 1ewq_A 565 ---------------TEFVPNDLEMA-H-ELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEE-AHLPLFDGIYTRI 626 (765)
T ss_dssp ---------------SCCCCEEEEES-S-CEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSE-EEECCCSEEEEEC
T ss_pred ---------------CceEeeeccCC-C-cEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhc-cceeeHHHhhccC
Confidence 13566777777 8 8999999999999999999988888999999999864 5677777888888
Q ss_pred CCchhhhcCcccchHHHHHHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcc
Q 004463 320 GDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDK 399 (752)
Q Consensus 320 g~~~~i~~~~stlSgg~krl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~ 399 (752)
+..+++....|+|+.++.+++.++..+++|+||||||||+||++.++.++++++++++.+.|+++|++|||+++..++
T Consensus 627 ~~~d~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~~~-- 704 (765)
T 1ewq_A 627 GASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTALG-- 704 (765)
T ss_dssp CC------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHTCC--
T ss_pred CHHHHHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh--
Confidence 999988888888877777777777779999999999999999999988887789998888889999999999998887
Q ss_pred cccccCCceeeccC--ccccchhhccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHhh
Q 004463 400 DTRFENAATEFSLE--TLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERL 455 (752)
Q Consensus 400 ~~~i~~g~v~~~~~--~l~~~Y~l~~g~~~~s~a~~ia~~~g~p~~ii~~A~~~~~~~ 455 (752)
...+.|++|.++.. .+.++|++..|.++.|||+++|+.+|+|++|+++|++.+..+
T Consensus 705 ~~~v~n~~~~~~~~~~~l~f~ykl~~G~~~~Sygi~vA~~aGlP~~VI~rA~~~l~~l 762 (765)
T 1ewq_A 705 LPRLKNLHVAAREEAGGLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARALLQAM 762 (765)
T ss_dssp CTTEEEEEEEEECCSSSCEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hhcceEEEEEEEEcCCeEEEEEEEEECCCCCchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 67788999988754 588999999999999999999999999999999999987643
No 3
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=100.00 E-value=5e-52 Score=499.69 Aligned_cols=363 Identities=24% Similarity=0.347 Sum_probs=298.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeEEecCeEEEEEecccccCCCCcEEEEEcCCCCE-EEecc
Q 004463 48 ASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGAT-YFMEP 126 (752)
Q Consensus 48 as~~L~~ir~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~r~~r~vl~vk~~~~~~~~~g~v~~~s~sg~t-~y~ep 126 (752)
..|+|+.+|+.++.....+++.+.+... .+. ...-.+++++++||+|+|+.++...+|+. +++.|.++.+ +|++|
T Consensus 492 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~-~i~--~~~~~~~~~~g~~y~iev~~~~~~~vp~~-~~~~~~~~~~~rf~tp 567 (918)
T 3thx_B 492 DFPLIKKRKDEIQGVIDEIRMHLQEIRK-ILK--NPSAQYVTVSGQEFMIEIKNSAVSCIPTD-WVKVGSTKAVSRFHSP 567 (918)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHT--CTTCCCEEETTEEEEEEEETTSGGGSCSS-CEEEEECSSEEEEECH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH-HhC--cccceeEeecCCEEEEEEcHHHHhhCCCe-EEEEEecCCeeEEECH
Confidence 3689999999988888888887765332 222 12235788889999999999999999955 4555555665 68777
Q ss_pred cchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCCCCCcce
Q 004463 127 KGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSS 206 (752)
Q Consensus 127 ~~~v~lnn~~~~l~~~e~~ee~~il~~l~~~i~~~~~~l~~~~~~~~~lD~l~a~a~~a~~~~~~~P~~~~~~~~~~~~~ 206 (752)
+++++++++..++.+....+.+++.++...+..+...+..+.+++++||+++|+|.+|..++||+|.|++.+ .
T Consensus 568 -el~~~~~~~~~~~e~~~~~e~~~~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~------~ 640 (918)
T 3thx_B 568 -FIVENYRHLNQLREQLVLDCSAEWLDFLEKFSEHYHSLCKAVHHLATVDCIFSLAKVAKQGDYCRPTVQEER------K 640 (918)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTSSSCBCCEEESSC------E
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCcccCCC------c
Confidence 499999999888777777777888888899999999999999999999999999999999999999998864 6
Q ss_pred eeEccccCCccccccccccccccCCCCCCCCccCCCeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHH
Q 004463 207 INIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTAS 284 (752)
Q Consensus 207 i~i~~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTl 284 (752)
+.|+++|||++... ... ++.+| +++|.+++| ++++|+||||||||||
T Consensus 641 i~i~~~rHP~le~~-~~~-----------------------------~~~~V~ndvsl~~~~g-~i~~ItGPNGaGKSTl 689 (918)
T 3thx_B 641 IVIKNGRHPVIDVL-LGE-----------------------------QDQYVPNNTDLSEDSE-RVMIITGPNMGGKSSY 689 (918)
T ss_dssp EEEEEECCHHHHHH-TCS-----------------------------CSSSCCEEEEECTTSC-CEEEEESCCCHHHHHH
T ss_pred EEEEeccchhhhhh-hcc-----------------------------CCceecccccccCCCC-eEEEEECCCCCchHHH
Confidence 99999999998421 110 01255 555555678 8999999999999999
Q ss_pred HHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHHHHHHHHHccCCCcEEEEeCCCCCCChH
Q 004463 285 MKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPS 364 (752)
Q Consensus 285 LK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~krl~~i~~la~~~~LlLLDEp~~glD~~ 364 (752)
||++|++.+|+|.|+++|+.. ..++++++++.++|..+++..++|+||+||++++.++..+++|+||||||||+||||.
T Consensus 690 Lr~i~~i~~~aq~g~~vpa~~-~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~ 768 (918)
T 3thx_B 690 IKQVALITIMAQIGSYVPAEE-ATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTH 768 (918)
T ss_dssp HHHHHHHHHHHHHTCCBSSSE-EEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHH
T ss_pred HHHHHHHHHHhhcCccccchh-hhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Confidence 999999999999999999875 5777788899999999999999999999999888887779999999999999999999
Q ss_pred hHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhccccc-ccCCceeec----------------cCccccchhhccCCC
Q 004463 365 EGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTR-FENAATEFS----------------LETLRPTYRILWGST 426 (752)
Q Consensus 365 ~~~~L~~all~~l~~-~~~tviitTH~~~l~~~a~~~~~-i~~g~v~~~----------------~~~l~~~Y~l~~g~~ 426 (752)
++.++++++++++.+ .|+++|++|||+++..++++... +.|++|.+. .+++.|+|++..|.+
T Consensus 769 ~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~~~~~~l~flykl~~G~~ 848 (918)
T 3thx_B 769 DGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIA 848 (918)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEEEEECC-----------------CCEEEEEEESCC
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhcccceEEEEEEEEEcccccccccccccCCCCceeEeeeeccCCC
Confidence 999999889999865 68999999999999999998875 899999873 246999999999999
Q ss_pred CCchHHHHHHHcCCCHHHHHHHHHHHH
Q 004463 427 GDSNALNIAKSIGFDRKIIQRAQKLVE 453 (752)
Q Consensus 427 ~~s~a~~ia~~~g~p~~ii~~A~~~~~ 453 (752)
+.|||+++|+++|+|++|+++|+..+.
T Consensus 849 ~~S~gi~vA~~aGlp~~vi~rA~~~~~ 875 (918)
T 3thx_B 849 ARSYGLNVAKLADVPGEILKKAAHKSK 875 (918)
T ss_dssp CTTTTHHHHTTTTCCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 999999999999999999999988664
No 4
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=100.00 E-value=2.4e-52 Score=509.38 Aligned_cols=395 Identities=22% Similarity=0.283 Sum_probs=306.6
Q ss_pred cCCChHHHHHHHhccccc----CCCee--cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CceeEEecCe
Q 004463 22 NCNFLTELEEKIGFCIDC----KLLII--LDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGID-KPLITKRRSR 94 (752)
Q Consensus 22 ~l~~~~~l~~~i~~~i~~----~~~~i--~d~as~~L~~ir~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~i~~r~~r 94 (752)
.++++.++...|.++|++ ++|.| +++.|++|+++|+.+++.+++|.+++.+.. ...++. ..+++++++|
T Consensus 563 ~~~~l~~~~~~~~~~id~~~~~~~g~i~~~~g~~~~ld~~r~~~~~~~~~l~~~~~~~~----~~~~~~~l~~~~~~~~~ 638 (1022)
T 2o8b_B 563 RFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQR----NRIGCRTIVYWGIGRNR 638 (1022)
T ss_dssp CBCCCHHHHHHHHTTSCHHHHHHSCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHTSSG----GGSSCSCCEEECCGGGC
T ss_pred chHHHHHHHHHHHHHhCchhhhcCCcEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCCCceeEEEecCce
Confidence 456777777888899986 22345 778899999999999999999998876532 222232 4567788899
Q ss_pred EEEEEecccccC-CCCcEEEEEcCCCCEEEecccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 004463 95 MCVGIKASHKYL-LPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVL 173 (752)
Q Consensus 95 ~vl~vk~~~~~~-~~~g~v~~~s~sg~t~y~ep~~~v~lnn~~~~l~~~e~~ee~~il~~l~~~i~~~~~~l~~~~~~~~ 173 (752)
|+|+|+..+... +|+.|++.++.+|++.|++|. +.+++.++...+.+....+.++..++.+.+..+...+..+.++++
T Consensus 639 y~i~v~~~~~~~~vp~~~~~~~t~~~~~rf~t~e-l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~la 717 (1022)
T 2o8b_B 639 YQLEIPENFTTRNLPEEYELKSTKKGCKRYWTKT-IEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIA 717 (1022)
T ss_dssp CEEEECTTTTSSCCCC-CEEEEETTEEEECCTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred EEEEEehhhhcccCCCceEEeeeccCccEEechH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998887 898889999999999999885 444444443333332333445666666677778999999999999
Q ss_pred HHHHHHHHHHHHH--hcCcccccccCCCCCCCcceeeEccccCCccccccccccccccCCCCCCCCccCCCeEEEccccc
Q 004463 174 EIDLAFARAGFAQ--WMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSK 251 (752)
Q Consensus 174 ~lD~l~a~a~~a~--~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~ls~ 251 (752)
.||+++|+|.+|. ..++|+|.|.... +....|.++++|||++..
T Consensus 718 ~lD~l~s~A~~a~~~~~~~~~P~~~~~~--~~~~~l~i~~~rHP~l~~-------------------------------- 763 (1022)
T 2o8b_B 718 VLDVLLCLANYSRGGDGPMCRPVILLPE--DTPPFLELKGSRHPCITK-------------------------------- 763 (1022)
T ss_dssp HHHHHHHHHHHTTCSSSCEECCEECCTT--TSCCCEEEEEECCCC-----------------------------------
T ss_pred HHHHHHhHHHHHhhccCCccCCccccCC--CCCceEEEEeccccEEEE--------------------------------
Confidence 9999999999999 7899999998420 011259999999999842
Q ss_pred cc-CCeeEeeeEE--Ecc-------CceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCC
Q 004463 252 GI-SDFPVPIDIK--VEC-------ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGD 321 (752)
Q Consensus 252 ~y-~~~~v~idl~--l~~-------g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~ 321 (752)
.| ++.+|++|++ +.+ | ++++||||||||||||||++|++.+|+|+|+|||+.. ..++++++|+.++|.
T Consensus 764 ~~~~~~~v~ndi~l~~~~~~~~~~~g-~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~-~~l~v~d~I~~rig~ 841 (1022)
T 2o8b_B 764 TFFGDDFIPNDILIGCEEEEQENGKA-YCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEV-CRLTPIDRVFTRLGA 841 (1022)
T ss_dssp ---CCCCCCEEEEESCCCSCC---CC-CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSE-EEECCCSBEEEECC-
T ss_pred EecCCceEeeeeeeccccccccCCCC-cEEEEECCCCCChHHHHHHHHHHHHHhheeEEeccCc-CCCCHHHHHHHHcCC
Confidence 12 2235644444 444 6 8999999999999999999999999999999999986 578888999999999
Q ss_pred chhhhcCcccchHHHHHHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcC-CcEEEEEecchhHHhhhccc
Q 004463 322 HQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKD 400 (752)
Q Consensus 322 ~~~i~~~~stlSgg~krl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~-~~tviitTH~~~l~~~a~~~ 400 (752)
.+++..+.|+||++|++++.|++++++|+||||||||+|||+.++.++++++++++.+. |+++|++|||+++.......
T Consensus 842 ~d~~~~~~stf~~em~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~ 921 (1022)
T 2o8b_B 842 SDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQN 921 (1022)
T ss_dssp --------CHHHHHHHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSC
T ss_pred HHHHhhchhhhHHHHHHHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999999888999999876 89999999999987654444
Q ss_pred ccccCCceee---------ccCccccchhhccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHhhch
Q 004463 401 TRFENAATEF---------SLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRP 457 (752)
Q Consensus 401 ~~i~~g~v~~---------~~~~l~~~Y~l~~g~~~~s~a~~ia~~~g~p~~ii~~A~~~~~~~~~ 457 (752)
+.+.+|+|.+ +.+.+.++|++..|.++.|||+++|+.+|+|++|+++|++.+..++.
T Consensus 922 ~~v~~g~~~~~~~~~~~~~~~~~l~~ly~l~~G~~~~Sygi~vA~l~Glp~~vi~rA~~~~~~le~ 987 (1022)
T 2o8b_B 922 VAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 987 (1022)
T ss_dssp SSEEEEEEEEC-------------CEEEEEESSCCCCCHHHHHHHHTTCCHHHHHHHHHHHHHTTS
T ss_pred ceeecCeEEEEEecCcccCCCCceEEEeeecCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4556788873 34578999999999999999999999999999999999998876543
No 5
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=100.00 E-value=8.1e-51 Score=490.49 Aligned_cols=392 Identities=19% Similarity=0.278 Sum_probs=317.1
Q ss_pred CCChHHHHHHHhcccccC----C-CeecCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CceeEEecC-
Q 004463 23 CNFLTELEEKIGFCIDCK----L-LIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGID---KPLITKRRS- 93 (752)
Q Consensus 23 l~~~~~l~~~i~~~i~~~----~-~~i~d~as~~L~~ir~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~i~~r~~- 93 (752)
+.+++++.+.|+++|+.+ | +.|++++|++|+++|+.+....+||.+++.+.... .++. ...+.....
T Consensus 444 ~~~l~~~~~~i~~~i~~~~~~~g~~~i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~----~~~~~~~~lk~~~~~~~ 519 (934)
T 3thx_A 444 RSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAARD----LGLDPGKQIKLDSSAQF 519 (934)
T ss_dssp HHHHHHHHHHHHTTBCTTGGGTTCCCBCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHH----SCCCBTTTBEEEECC--
T ss_pred HhhHHHHHHHHHHHhCcchhhcCCceeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCCccceEEEEEeccc
Confidence 345677888899999864 3 57999999999999999999999999888764432 2231 222222222
Q ss_pred eEEEEEecccccC--CCCcEEEEEcCCCCEEEecccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 004463 94 RMCVGIKASHKYL--LPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDR 171 (752)
Q Consensus 94 r~vl~vk~~~~~~--~~~g~v~~~s~sg~t~y~ep~~~v~lnn~~~~l~~~e~~ee~~il~~l~~~i~~~~~~l~~~~~~ 171 (752)
+|++.|....... .|..|+.-.+.++..+|..| ++.++++++.+++.+..+++.+|+.+|...+..+...+..+.++
T Consensus 520 Gy~i~v~~~~~~~~~~~~~~~~~~t~~~~~rf~t~-el~~l~~~~~~~~~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~ 598 (934)
T 3thx_A 520 GYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNS-KLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDV 598 (934)
T ss_dssp CEEEEECHHHHTTTTTCSSCEEEEEC--CEEEECT-THHHHHHHHTTTTHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHH
T ss_pred eEEEEEEechhhccCCCCCcEEEEcccCeEEEECH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888776432222 23334444444455666555 69999999999988888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh--cCcccccccCCCCCCCcceeeEccccCCccccccccccccccCCCCCCCCccCCCeEEEccc
Q 004463 172 VLEIDLAFARAGFAQW--MDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSL 249 (752)
Q Consensus 172 ~~~lD~l~a~a~~a~~--~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~l 249 (752)
+++||+++|+|.+|.. ++||+|.|++.+ +..|.++++|||++... .
T Consensus 599 la~lD~l~s~A~~a~~~~~~~~rP~~~~~~----~~~i~i~~~rHP~le~~-~--------------------------- 646 (934)
T 3thx_A 599 LAQLDAVVSFAHVSNGAPVPYVRPAILEKG----QGRIILKASRHACVEVQ-D--------------------------- 646 (934)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCBCCEEECTT----SCEEEEEEECCTTTTTC-----------------------------
T ss_pred HHHHHHHHHHHHHHHhccCCCcCCeeccCC----CcceEeecCccchhhhc-C---------------------------
Confidence 9999999999999987 789999998732 12699999999998521 0
Q ss_pred ccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhc
Q 004463 250 SKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQ 327 (752)
Q Consensus 250 s~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~ 327 (752)
++.+| +++|.+..| ++++|+||||||||||||++|++.+|+|+|+++|+.. ..++.++.+++++|..+++.+
T Consensus 647 ----~~~~v~ndisl~~~~g-~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~-~~~~~~d~i~~~ig~~d~l~~ 720 (934)
T 3thx_A 647 ----EIAFIPNDVYFEKDKQ-MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES-AEVSIVDCILARVGAGDSQLK 720 (934)
T ss_dssp -----CCCCCEEEEEETTTB-CEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEE-EEEECCSEEEEECC-------
T ss_pred ----CceeecccceeecCCC-eEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccc-ccchHHHHHHHhcCchhhHHH
Confidence 01245 556666677 8999999999999999999999999999999999986 577888899999999999999
Q ss_pred CcccchHHHHHHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhcccccccCC
Q 004463 328 NLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENA 406 (752)
Q Consensus 328 ~~stlSgg~krl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~l~~~a~~~~~i~~g 406 (752)
.+|+||++|++++.++..+++|+||||||||+||||.++.++++++++++.+ .|+++|++|||+++..+|++.+.+.||
T Consensus 721 ~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng 800 (934)
T 3thx_A 721 GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNL 800 (934)
T ss_dssp --CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEE
T ss_pred hHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEee
Confidence 9999999999999998789999999999999999999999999999999986 589999999999999999999999999
Q ss_pred ceee--ccCccccchhhccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHhhch
Q 004463 407 ATEF--SLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRP 457 (752)
Q Consensus 407 ~v~~--~~~~l~~~Y~l~~g~~~~s~a~~ia~~~g~p~~ii~~A~~~~~~~~~ 457 (752)
+|.+ +.+.+.++|++..|.++.|||+++|+.+|+|++|+++|++.+..++.
T Consensus 801 ~v~~~~~~~~l~~~y~l~~G~~~~S~gi~vA~~~glp~~vi~~A~~~~~~le~ 853 (934)
T 3thx_A 801 HVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEE 853 (934)
T ss_dssp EEEEEEETTEEEEEEEEEESCCCCCCHHHHHHHTTCCHHHHHHHHHHHHHTTT
T ss_pred EEEEEecCCcEEEEEEEeeCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 9975 56789999999999999999999999999999999999998876543
No 6
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.96 E-value=2.5e-29 Score=258.22 Aligned_cols=167 Identities=18% Similarity=0.234 Sum_probs=138.4
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------------hh
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SK 296 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------------aq 296 (752)
|++++||+++|++..+ ++||++++| ++++|+||||||||||||++ |++.+. .+
T Consensus 4 ~l~~~~l~~~y~~~~~l~~vsl~i~~G-e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 4 ILRAENIKKVIRGYEILKGISLSVKKG-EFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred EEEEEeEEEEECCEeeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 7899999999988766 999999999 99999999999999999999 666420 12
Q ss_pred hceeecCCCC--CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEE
Q 004463 297 AGLYLPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 352 (752)
Q Consensus 297 ~G~~vP~~~~--~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~Ll 352 (752)
.-.|+|+... ..+++. +.++..+|+.+..++.+++|||||+ |++++++++.+|++|
T Consensus 83 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ll 162 (224)
T 2pcj_A 83 KLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILL 162 (224)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEE
T ss_pred cEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 2347887642 122222 2346667888888999999999999 899999999999999
Q ss_pred EEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 353 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 353 LLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
||||||+|||+.....+.. ++..+.+.|.|+|++||+.++..+|++++.+.+|++..+
T Consensus 163 lLDEPt~~LD~~~~~~~~~-~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~ 220 (224)
T 2pcj_A 163 FADEPTGNLDSANTKRVMD-IFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGE 220 (224)
T ss_dssp EEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999998 555566558999999999887689999999999987654
No 7
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=6.9e-29 Score=259.98 Aligned_cols=168 Identities=21% Similarity=0.253 Sum_probs=138.4
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------------------hhhcee
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLY 300 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------aq~G~~ 300 (752)
++|+++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |++.+. .+.-.|
T Consensus 14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~G-ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~ 92 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKEILKGISFEIEEG-EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 92 (256)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred CeEEEEEEEEEECCEEEEEeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEE
Confidence 57899999999988766 999999999 99999999999999999999 665431 112347
Q ss_pred ecCCCC--CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeC
Q 004463 301 LPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE 356 (752)
Q Consensus 301 vP~~~~--~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDE 356 (752)
+|+... ..+++. +.++..+|+.+..++.+++|||||+ |++++++++.+|++|||||
T Consensus 93 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE 172 (256)
T 1vpl_A 93 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDE 172 (256)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 777642 122222 2345667888888999999999999 8999999999999999999
Q ss_pred CCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 357 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 357 p~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
||+||||.....+.. ++..+.+.|.|||++||+++. ..+|++++.+.+|++...
T Consensus 173 Pts~LD~~~~~~l~~-~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~ 227 (256)
T 1vpl_A 173 PTSGLDVLNAREVRK-ILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVET 227 (256)
T ss_dssp TTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEE
T ss_pred CccccCHHHHHHHHH-HHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEe
Confidence 999999999999998 555566668999999999885 558999999999988654
No 8
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.96 E-value=5.6e-29 Score=263.20 Aligned_cols=168 Identities=17% Similarity=0.163 Sum_probs=138.2
Q ss_pred CeEEEcccccccCC-eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh---------------------hh
Q 004463 242 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SK 296 (752)
Q Consensus 242 ~~l~~~~ls~~y~~-~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~---------------------aq 296 (752)
.||+++||+++|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+. .+
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~G-e~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRG-EVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETT-SEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 37899999999975 334 999999999 99999999999999999999 666321 12
Q ss_pred hceeecCCCC---CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcE
Q 004463 297 AGLYLPAKNH---PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 351 (752)
Q Consensus 297 ~G~~vP~~~~---~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~L 351 (752)
.-.|+|+... ..+++. +.++..+|+.+..++.+++|||||+ |+++|++++.+|++
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~l 164 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV 164 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 2347787531 223332 3456778888889999999999999 89999999999999
Q ss_pred EEEeCCCCCCChHhHHHHHHHHHHHHh-cCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 352 VLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 352 lLLDEp~~glD~~~~~~L~~all~~l~-~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
|||||||+||||.....+.. ++..+. +.|.|||++||+++ +..+||+++.+.+|.+..+
T Consensus 165 LlLDEPts~LD~~~~~~i~~-~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~ 225 (275)
T 3gfo_A 165 LILDEPTAGLDPMGVSEIMK-LLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQ 225 (275)
T ss_dssp EEEECTTTTCCHHHHHHHHH-HHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEE
T ss_pred EEEECccccCCHHHHHHHHH-HHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999998 555565 55899999999988 4569999999999998765
No 9
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.96 E-value=7e-29 Score=261.35 Aligned_cols=168 Identities=15% Similarity=0.188 Sum_probs=139.0
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------------------hhhhce
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGL 299 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------~aq~G~ 299 (752)
.|++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+ +++...
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~G-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASG-EMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 47899999999998876 999999999 99999999999999999999 66532 122345
Q ss_pred eecCCCCC--CchH-------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccC------CCcE
Q 004463 300 YLPAKNHP--RLPW-------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS------RESL 351 (752)
Q Consensus 300 ~vP~~~~~--~l~~-------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~------~~~L 351 (752)
++|+.... .+++ ++.++..+++.+..++.+++|||||+ |++++++++. +|++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~l 168 (266)
T 4g1u_C 89 VMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRW 168 (266)
T ss_dssp EECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEE
T ss_pred EEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence 67765421 2222 34457778888888999999999999 8999999998 9999
Q ss_pred EEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 352 VLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 352 lLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
|||||||+||||.....+.. ++..+.+ .+.|+|++|||+++ ..+||+++.+.+|++..+
T Consensus 169 LllDEPts~LD~~~~~~i~~-~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~ 229 (266)
T 4g1u_C 169 LFLDEPTSALDLYHQQHTLR-LLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVAC 229 (266)
T ss_dssp EEECCCCSSCCHHHHHHHHH-HHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred EEEeCccccCCHHHHHHHHH-HHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999998 5555654 45799999999885 569999999999998764
No 10
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.96 E-value=6e-29 Score=257.24 Aligned_cols=167 Identities=16% Similarity=0.217 Sum_probs=135.0
Q ss_pred eEEEcccccccCC----eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh---------------------
Q 004463 243 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------- 294 (752)
Q Consensus 243 ~l~~~~ls~~y~~----~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------------- 294 (752)
|++++||+++|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~G-e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEG-EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHH
Confidence 5789999999973 234 999999999 99999999999999999999 666431
Q ss_pred --hhhceeecCCCC--CCchHHHH------------------------HHHHcCCchhh-hcCcccchHHHH-HHHHHHH
Q 004463 295 --SKAGLYLPAKNH--PRLPWFDL------------------------ILADIGDHQSL-EQNLSTFSGHIS-RIVDILE 344 (752)
Q Consensus 295 --aq~G~~vP~~~~--~~l~~~d~------------------------i~~~ig~~~~i-~~~~stlSgg~k-rl~~i~~ 344 (752)
.+.-.|+|+... ..+++.++ ++..+++.+.. ++.+++|||||+ |+++|++
T Consensus 80 ~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAra 159 (235)
T 3tif_A 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARA 159 (235)
T ss_dssp HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred HhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 112347888752 12333333 34556666654 889999999999 8999999
Q ss_pred ccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc-CCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 345 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 345 la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~-~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
++.+|++|||||||+||||.....+.. ++..+.+ .|.|+|++|||+++..+|++++.+.+|.+...
T Consensus 160 l~~~p~llllDEPts~LD~~~~~~i~~-~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~ 226 (235)
T 3tif_A 160 LANNPPIILADQPTWALDSKTGEKIMQ-LLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVERE 226 (235)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEE
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999998 4555554 48999999999998789999999999998654
No 11
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.96 E-value=1.5e-28 Score=258.43 Aligned_cols=167 Identities=20% Similarity=0.245 Sum_probs=137.4
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh---------------------hhhc
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAG 298 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~---------------------aq~G 298 (752)
|++++||++.|++..+ ++||++.+| ++++|+||||||||||||+| |++.+. .+..
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~G-ei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i 102 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREG-EVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEV 102 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHE
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCC-CEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcE
Confidence 6899999999998766 999999999 99999999999999999999 665421 1123
Q ss_pred eeecCCCC--CCchHH----------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEE
Q 004463 299 LYLPAKNH--PRLPWF----------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL 353 (752)
Q Consensus 299 ~~vP~~~~--~~l~~~----------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlL 353 (752)
.|+|+... ..+++. +.++..+|+.+..++.+++|||||+ |++++++++.+|++||
T Consensus 103 ~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lll 182 (263)
T 2olj_A 103 GMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIML 182 (263)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 47787642 122222 2345667788888999999999999 8999999999999999
Q ss_pred EeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 354 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 354 LDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
|||||+||||.....+.. ++..+.+.|.|+|++||+.+. ..+|++++.+.+|.+...
T Consensus 183 LDEPts~LD~~~~~~~~~-~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 240 (263)
T 2olj_A 183 FDEPTSALDPEMVGEVLS-VMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEE 240 (263)
T ss_dssp EESTTTTSCHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred EeCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999998 555566568999999999884 569999999999988654
No 12
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.95 E-value=1.5e-28 Score=268.12 Aligned_cols=168 Identities=21% Similarity=0.270 Sum_probs=141.8
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh---------------------hhhc
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAG 298 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~---------------------aq~G 298 (752)
||+++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |+..+. .+.-
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPG-EILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCC-CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence 6899999999998776 999999999 99999999999999999999 666431 1122
Q ss_pred eeecCCCC--CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEE
Q 004463 299 LYLPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 354 (752)
Q Consensus 299 ~~vP~~~~--~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLL 354 (752)
.++|++.. ..++++ +.++..+|+.+..++.+++|||||+ |++++++++.+|++|||
T Consensus 83 g~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLL 162 (359)
T 3fvq_A 83 GYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILL 162 (359)
T ss_dssp EEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 46677641 223333 3457778899999999999999999 89999999999999999
Q ss_pred eCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 355 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 355 DEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
||||+|||+..+..+...+.+.+.+.|.|+|++|||.+ ...+||++..+.+|++...
T Consensus 163 DEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~ 220 (359)
T 3fvq_A 163 DEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQT 220 (359)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEE
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEE
Confidence 99999999999999988677777778999999999987 4569999999999998764
No 13
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=1.1e-28 Score=256.13 Aligned_cols=168 Identities=21% Similarity=0.242 Sum_probs=136.7
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhh-c
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA-G 298 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~-G 298 (752)
.|++++||+++|++.++ ++||++++| ++++|+||||||||||||+| |++.+. .+. -
T Consensus 5 ~~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIHAIKGIDLKVPRG-QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred ceEEEEeEEEEECCeeEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 47899999999998766 999999999 99999999999999999999 766431 111 3
Q ss_pred eeecCCCC--CCchHH--------------------HHHHHHc-CCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEE
Q 004463 299 LYLPAKNH--PRLPWF--------------------DLILADI-GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 354 (752)
Q Consensus 299 ~~vP~~~~--~~l~~~--------------------d~i~~~i-g~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLL 354 (752)
.|+|+... ..+++. +.++..+ |+.+..++.+++|||||+ |++++++++.+|++|||
T Consensus 84 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllL 163 (240)
T 1ji0_A 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMM 163 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 47787642 122222 3345556 366777889999999999 89999999999999999
Q ss_pred eCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 355 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 355 DEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
||||+||||.....+.. ++..+.+.|.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 164 DEPts~LD~~~~~~l~~-~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 220 (240)
T 1ji0_A 164 DEPSLGLAPILVSEVFE-VIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLE 220 (240)
T ss_dssp ECTTTTCCHHHHHHHHH-HHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred cCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999998 44556657899999999986 5679999999999988653
No 14
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.95 E-value=2.4e-28 Score=256.75 Aligned_cols=167 Identities=19% Similarity=0.180 Sum_probs=137.4
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------------
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------- 294 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------------- 294 (752)
|++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |++.+.
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~G-e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAG-DVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 7899999999998766 999999999 99999999999999999999 665321
Q ss_pred -------hhhceeecCCCC--CCchHH----------------------HHHHHHcCCchh-hhcCcccchHHHH-HHHH
Q 004463 295 -------SKAGLYLPAKNH--PRLPWF----------------------DLILADIGDHQS-LEQNLSTFSGHIS-RIVD 341 (752)
Q Consensus 295 -------aq~G~~vP~~~~--~~l~~~----------------------d~i~~~ig~~~~-i~~~~stlSgg~k-rl~~ 341 (752)
.+.-.|+|+... ..+++. +.++..+|+.+. .++.+++|||||+ |+++
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~l 164 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 164 (262)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHH
Confidence 011247777642 122222 234666788887 8999999999999 8999
Q ss_pred HHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 342 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 342 i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
+++++.+|++|||||||+||||.....+.. ++..+.+.|.|+|++||+++. ..+|++++.+.+|++...
T Consensus 165 AraL~~~p~lllLDEPts~LD~~~~~~~~~-~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 234 (262)
T 1b0u_A 165 ARALAMEPDVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 234 (262)
T ss_dssp HHHHHTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999998 555566668999999999885 569999999999988654
No 15
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.95 E-value=2.8e-28 Score=266.23 Aligned_cols=170 Identities=15% Similarity=0.177 Sum_probs=139.0
Q ss_pred CCCeEEEcccccccCC----eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------------------
Q 004463 240 ENSEMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------ 294 (752)
Q Consensus 240 g~~~l~~~~ls~~y~~----~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------ 294 (752)
...||+++||++.|++ ..+ ++||++++| ++++|+||||||||||||+| |+..+.
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~G-ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAG-QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE 99 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCC-CEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 3468999999999964 233 999999999 99999999999999999999 665321
Q ss_pred ----hhhceeecCCCC--CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHcc
Q 004463 295 ----SKAGLYLPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV 346 (752)
Q Consensus 295 ----aq~G~~vP~~~~--~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la 346 (752)
.+.-.++|+... ..++++ +.++..+|+.+..++.+++|||||+ |++++++++
T Consensus 100 ~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~ 179 (366)
T 3tui_C 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALA 179 (366)
T ss_dssp HHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTT
T ss_pred HHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHh
Confidence 122347888752 123333 3456778888889999999999999 899999999
Q ss_pred CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHh-cCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 347 SRESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 347 ~~~~LlLLDEp~~glD~~~~~~L~~all~~l~-~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
.+|++|||||||+||||.....+.. ++..+. +.|.|+|++||+++. ..+||+++.+.+|++...
T Consensus 180 ~~P~lLLlDEPTs~LD~~~~~~i~~-lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~ 245 (366)
T 3tui_C 180 SNPKVLLCDQATSALDPATTRSILE-LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 245 (366)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEC
T ss_pred cCCCEEEEECCCccCCHHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999998 555564 558999999999885 568999999999988765
No 16
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.95 E-value=4.6e-28 Score=253.86 Aligned_cols=168 Identities=15% Similarity=0.133 Sum_probs=137.5
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh--------------------hhhc
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAG 298 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------------aq~G 298 (752)
.|++++||+++|++..+ ++||++++| ++++|+||||||||||||+| |++.+. .+.-
T Consensus 6 ~~l~i~~l~~~y~~~~vl~~vsl~i~~G-e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 6 EILRTENIVKYFGEFKALDGVSISVNKG-DVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred cEEEEeeeEEEECCEeeEeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 37899999999998766 999999999 99999999999999999999 666421 1112
Q ss_pred eeecCCCC--CCch----------------------------------HHHHHHHHcCCchhhhcCcccchHHHH-HHHH
Q 004463 299 LYLPAKNH--PRLP----------------------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVD 341 (752)
Q Consensus 299 ~~vP~~~~--~~l~----------------------------------~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~ 341 (752)
.|+|+... ..++ .++.++..+|+.+..++.+++|||||+ |+++
T Consensus 85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~i 164 (257)
T 1g6h_A 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEI 164 (257)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHH
Confidence 46776531 0011 123456777888888999999999999 8999
Q ss_pred HHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 342 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 342 i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+++++.+|++|||||||+||||.....+.. ++..+.+.|.|||++||+++ +..+|++++.+.+|.+...
T Consensus 165 AraL~~~p~lllLDEPts~LD~~~~~~l~~-~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 234 (257)
T 1g6h_A 165 GRALMTNPKMIVMDEPIAGVAPGLAHDIFN-HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE 234 (257)
T ss_dssp HHHHHTCCSEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEE
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999998 55556666899999999987 5569999999999988654
No 17
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.95 E-value=5.5e-28 Score=263.68 Aligned_cols=171 Identities=16% Similarity=0.126 Sum_probs=139.0
Q ss_pred CCCeEEEccccccc-CCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------hhhc
Q 004463 240 ENSEMTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAG 298 (752)
Q Consensus 240 g~~~l~~~~ls~~y-~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------aq~G 298 (752)
|..|++++||+++| ++..+ ++||++++| ++++|+||||||||||||+| |++.+. .+.-
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 89 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREG-EMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSE
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCC-CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcE
Confidence 56789999999999 76554 999999999 99999999999999999999 666431 1112
Q ss_pred eeecCCCC--CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEE
Q 004463 299 LYLPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 354 (752)
Q Consensus 299 ~~vP~~~~--~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLL 354 (752)
.|+|++.. ..+++. +.++..+|+.+..++.+++|||||+ |++++++++.+|++|||
T Consensus 90 g~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL 169 (355)
T 1z47_A 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLF 169 (355)
T ss_dssp EEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 36666531 222332 3456678888889999999999999 89999999999999999
Q ss_pred eCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 355 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 355 DEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
||||+|||+..+..+...+.+...+.|.|+|++|||.+ ...+||+++.+.+|++...
T Consensus 170 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~ 227 (355)
T 1z47_A 170 DEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQF 227 (355)
T ss_dssp ESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999998555443445899999999987 4568999999999987653
No 18
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.95 E-value=5.6e-28 Score=265.39 Aligned_cols=168 Identities=19% Similarity=0.226 Sum_probs=139.0
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------hhhceeec
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 302 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------aq~G~~vP 302 (752)
+|+++||+|+|++..+ ++||++.+| ++++|+||||||||||||+| |++.+. .+.-.++|
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~Vf 81 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEG-EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVF 81 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEEC
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCC-CEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEe
Confidence 5889999999998776 999999999 99999999999999999999 666431 11123677
Q ss_pred CCCC--CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCC
Q 004463 303 AKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 358 (752)
Q Consensus 303 ~~~~--~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~ 358 (752)
|+.. ..+++. +.++..+|+.+..++.+++|||||+ |++++++++.+|++|||||||
T Consensus 82 Q~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPt 161 (381)
T 3rlf_A 82 QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (381)
T ss_dssp TTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred cCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 7642 223333 3456778888899999999999999 899999999999999999999
Q ss_pred CCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 359 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 359 ~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
++||+..+..+...+.+...+.|.|+|++|||++ ...+||++..+.+|.+...
T Consensus 162 s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~ 215 (381)
T 3rlf_A 162 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV 215 (381)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999998554433455899999999987 5579999999999998654
No 19
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.95 E-value=1.2e-27 Score=261.52 Aligned_cols=168 Identities=18% Similarity=0.172 Sum_probs=138.4
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------hhhceeec
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 302 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------aq~G~~vP 302 (752)
|++++||+++|++..+ ++||++++| ++++|+||||||||||||+| |++.+. .+.-.|+|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDG-EFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVF 81 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCC-CEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEe
Confidence 6889999999998765 999999999 99999999999999999999 666431 11224677
Q ss_pred CCCC--CCchH---------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCC
Q 004463 303 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 358 (752)
Q Consensus 303 ~~~~--~~l~~---------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~ 358 (752)
++.. ..+++ ++.++..+|+.+..++.+++|||||+ |++++++++.+|++|||||||
T Consensus 82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~ 161 (359)
T 2yyz_A 82 QNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPL 161 (359)
T ss_dssp SSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 7641 12222 33457778888889999999999999 899999999999999999999
Q ss_pred CCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 359 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 359 ~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+|||+..+..+...+.+...+.|.|+|++|||.+ ...+||+++.+.+|++...
T Consensus 162 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~ 215 (359)
T 2yyz_A 162 SNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQY 215 (359)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999998555543445899999999987 4579999999999988653
No 20
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.95 E-value=1.5e-27 Score=249.52 Aligned_cols=165 Identities=16% Similarity=0.156 Sum_probs=135.5
Q ss_pred eEEEcccccccC-CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------hhhceeecCCCCC--Cch
Q 004463 243 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------SKAGLYLPAKNHP--RLP 310 (752)
Q Consensus 243 ~l~~~~ls~~y~-~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------aq~G~~vP~~~~~--~l~ 310 (752)
|++++||+++|+ +..+ ++||++++| ++++|+||||||||||||+| |++.+. .+.-.|+|+.... .++
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~t 82 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKG-DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYS 82 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETT-CEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCB
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCC
Confidence 789999999998 7665 999999999 99999999999999999999 776542 1222467775421 111
Q ss_pred H-------------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChH
Q 004463 311 W-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS 364 (752)
Q Consensus 311 ~-------------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~ 364 (752)
+ ++.++..+|+.+..++.+++|||||+ |++++++++.+|++|||||||+|||+.
T Consensus 83 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~ 162 (253)
T 2nq2_C 83 VLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLA 162 (253)
T ss_dssp HHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHH
T ss_pred HHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 1 23456677888888999999999999 899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcC-CcEEEEEecchhH-HhhhcccccccCCceee
Q 004463 365 EGVALATSILQYLRDR-VGLAVVTTHYADL-SCLKDKDTRFENAATEF 410 (752)
Q Consensus 365 ~~~~L~~all~~l~~~-~~tviitTH~~~l-~~~a~~~~~i~~g~v~~ 410 (752)
....+...+ ..+.+. |.|+|++||+.+. ..+|++++.+.+|. ..
T Consensus 163 ~~~~l~~~l-~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~ 208 (253)
T 2nq2_C 163 NQDIVLSLL-IDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FK 208 (253)
T ss_dssp HHHHHHHHH-HHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EE
T ss_pred HHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-Ee
Confidence 999999844 455554 8899999999885 57999999999988 43
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.95 E-value=1.5e-27 Score=251.30 Aligned_cols=167 Identities=13% Similarity=0.119 Sum_probs=136.4
Q ss_pred eEEEcccccccC--C---eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh----------------hhhc
Q 004463 243 EMTVGSLSKGIS--D---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------SKAG 298 (752)
Q Consensus 243 ~l~~~~ls~~y~--~---~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~----------------aq~G 298 (752)
|++++||+++|+ + ..+ ++||++.+| ++++|+||||||||||||+| |++.+. .+.-
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~G-e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i 80 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEG-ECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNI 80 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhE
Confidence 688999999997 4 444 999999999 99999999999999999999 666431 1223
Q ss_pred eeecCCC---CCCchH--------------------HHHHHHHcCCc--hhhhcCcccchHHHH-HHHHHHHccCCCcEE
Q 004463 299 LYLPAKN---HPRLPW--------------------FDLILADIGDH--QSLEQNLSTFSGHIS-RIVDILELVSRESLV 352 (752)
Q Consensus 299 ~~vP~~~---~~~l~~--------------------~d~i~~~ig~~--~~i~~~~stlSgg~k-rl~~i~~la~~~~Ll 352 (752)
.|+|+.. ...+++ ++.++..+|+. +..++.+++|||||+ |++++++++.+|++|
T Consensus 81 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 160 (266)
T 2yz2_A 81 GIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDIL 160 (266)
T ss_dssp EEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 4777762 111222 34567778888 888999999999999 899999999999999
Q ss_pred EEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 353 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 353 LLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
||||||+|||+.....+.. ++..+.+.|.|+|++||+++ +..+|++++.+.+|.+...
T Consensus 161 lLDEPts~LD~~~~~~l~~-~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~ 219 (266)
T 2yz2_A 161 ILDEPLVGLDREGKTDLLR-IVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFD 219 (266)
T ss_dssp EEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEE
T ss_pred EEcCccccCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999998 45556555899999999987 4568999999999988654
No 22
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.95 E-value=1.8e-27 Score=259.23 Aligned_cols=168 Identities=20% Similarity=0.210 Sum_probs=137.7
Q ss_pred eEEEcccccccCCeeE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------hhhceeecC
Q 004463 243 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPA 303 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------aq~G~~vP~ 303 (752)
|++++||+++|++..+ ++||++++| ++++|+||||||||||||+| |+..+. .+.-.|+|+
T Consensus 1 ml~~~~l~~~y~~~~l~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q 79 (348)
T 3d31_A 1 MIEIESLSRKWKNFSLDNLSLKVESG-EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (348)
T ss_dssp CEEEEEEEEECSSCEEEEEEEEECTT-CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred CEEEEEEEEEECCEEEeeeEEEEcCC-CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEec
Confidence 6789999999987633 999999999 99999999999999999999 666431 112347777
Q ss_pred CCC--CCchHH------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCC
Q 004463 304 KNH--PRLPWF------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 362 (752)
Q Consensus 304 ~~~--~~l~~~------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD 362 (752)
+.. ..+++. +.++..+|+.+..++.+++|||||+ |++++++++.+|++|||||||+|||
T Consensus 80 ~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD 159 (348)
T 3d31_A 80 NYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159 (348)
T ss_dssp TCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSC
T ss_pred CcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCC
Confidence 642 223332 3456677888888999999999999 8999999999999999999999999
Q ss_pred hHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 363 PSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 363 ~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+..+..+...+.+...+.|.|+|++|||.+ ...+||+++.+.+|++...
T Consensus 160 ~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~ 209 (348)
T 3d31_A 160 PRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV 209 (348)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999998555444456899999999987 5679999999999988654
No 23
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.94 E-value=1.3e-27 Score=249.39 Aligned_cols=167 Identities=22% Similarity=0.202 Sum_probs=129.5
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hh--hhh-------------------hhhh-
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GL--ASL-------------------MSKA- 297 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gl--i~~-------------------~aq~- 297 (752)
|++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |+ +.+ ..+.
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKG-EVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 6899999999988766 999999999 99999999999999999999 76 321 0122
Q ss_pred ceeecCCCC--CCchHH------------------------HHHHHHcCC-chhhhcCccc-chHHHH-HHHHHHHccCC
Q 004463 298 GLYLPAKNH--PRLPWF------------------------DLILADIGD-HQSLEQNLST-FSGHIS-RIVDILELVSR 348 (752)
Q Consensus 298 G~~vP~~~~--~~l~~~------------------------d~i~~~ig~-~~~i~~~~st-lSgg~k-rl~~i~~la~~ 348 (752)
..++|+... ..+++. +.++..+|+ .+..++.+++ |||||+ |++++++++.+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~ 161 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLE 161 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHC
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcC
Confidence 236676642 111221 234555677 4667888899 999999 89999999999
Q ss_pred CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHh-h-hcccccccCCceeec
Q 004463 349 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC-L-KDKDTRFENAATEFS 411 (752)
Q Consensus 349 ~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~-~-a~~~~~i~~g~v~~~ 411 (752)
|++|||||||+|||+.....+.. ++..+.+.|.|+|++||+.++.. + |++++.+.+|++...
T Consensus 162 p~lllLDEPts~LD~~~~~~l~~-~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~ 225 (250)
T 2d2e_A 162 PTYAVLDETDSGLDIDALKVVAR-GVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVAT 225 (250)
T ss_dssp CSEEEEECGGGTTCHHHHHHHHH-HHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEE
T ss_pred CCEEEEeCCCcCCCHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEE
Confidence 99999999999999999999998 55666667889999999988554 6 599999999987654
No 24
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.94 E-value=1.4e-27 Score=261.26 Aligned_cols=168 Identities=16% Similarity=0.201 Sum_probs=137.5
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------hhhceeec
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 302 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------aq~G~~vP 302 (752)
|++++||+++|++..+ ++||++++| ++++|+||||||||||||+| |++.+. .+.-.++|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDG-EFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVF 81 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCC-CEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEe
Confidence 6889999999988665 999999999 99999999999999999999 666431 11224677
Q ss_pred CCCC--CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCC
Q 004463 303 AKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 358 (752)
Q Consensus 303 ~~~~--~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~ 358 (752)
++.. ..+++. +.++..+|+.+..++.+++|||||+ |++++++++.+|++|||||||
T Consensus 82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 161 (362)
T 2it1_A 82 QNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPL 161 (362)
T ss_dssp TTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGG
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 7642 223332 3346677888888999999999999 899999999999999999999
Q ss_pred CCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 359 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 359 ~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+|||+..+..+...+.+...+.|.|+|++|||.+ ...+||+++.+.+|++...
T Consensus 162 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~ 215 (362)
T 2it1_A 162 SNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQV 215 (362)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999998554433445899999999987 4579999999999988653
No 25
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.94 E-value=1.4e-27 Score=253.18 Aligned_cols=168 Identities=14% Similarity=0.133 Sum_probs=135.8
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh---------------------hhh
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKA 297 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~---------------------aq~ 297 (752)
.|++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |++.+. .+.
T Consensus 20 ~~l~~~~l~~~y~~~~vL~~isl~i~~G-e~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 98 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKTILKKISWQIAKG-DKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQH 98 (279)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTT
T ss_pred ceEEEEeEEEEECCEEEEEeeeEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCc
Confidence 47999999999998766 999999999 99999999999999999999 665421 111
Q ss_pred ceeecCCCC----CCchH-------------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccC
Q 004463 298 GLYLPAKNH----PRLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS 347 (752)
Q Consensus 298 G~~vP~~~~----~~l~~-------------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~ 347 (752)
-.|+|+... ..+++ ++.++..+|+.+..++.+++|||||+ |++++++++.
T Consensus 99 i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~ 178 (279)
T 2ihy_A 99 IGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMG 178 (279)
T ss_dssp EEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT
T ss_pred EEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhC
Confidence 235665421 11122 23446667888888999999999999 8999999999
Q ss_pred CCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEE--EEEecchhH-HhhhcccccccCCceeec
Q 004463 348 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLA--VVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 348 ~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tv--iitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
+|+||||||||+|||+.....+...+ ..+.+.|.|+ |++||+.+. ..+|++++.+.+|++...
T Consensus 179 ~p~lLlLDEPts~LD~~~~~~l~~~l-~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~ 244 (279)
T 2ihy_A 179 QPQVLILDEPAAGLDFIARESLLSIL-DSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQ 244 (279)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHH-HHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEE
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHH-HHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999855 4455448899 999999885 579999999999988654
No 26
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.94 E-value=1.4e-27 Score=247.67 Aligned_cols=165 Identities=19% Similarity=0.226 Sum_probs=133.4
Q ss_pred eEEEcccccccCCeeE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------hhhceeecC
Q 004463 243 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPA 303 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------aq~G~~vP~ 303 (752)
|++++||+++|++. + ++||++++ ++++|+||||||||||||++ |++.+. .+.-.|+|+
T Consensus 1 ml~~~~l~~~y~~~-l~~isl~i~~--e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (240)
T 2onk_A 1 MFLKVRAEKRLGNF-RLNVDFEMGR--DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQ 77 (240)
T ss_dssp CCEEEEEEEEETTE-EEEEEEEECS--SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCS
T ss_pred CEEEEEEEEEeCCE-EeeeEEEECC--EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcC
Confidence 57899999999874 5 99999987 69999999999999999999 666431 111236676
Q ss_pred CCC--CCchH-------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCC
Q 004463 304 KNH--PRLPW-------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT 361 (752)
Q Consensus 304 ~~~--~~l~~-------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~gl 361 (752)
... ..+++ ++.++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+||
T Consensus 78 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~L 157 (240)
T 2onk_A 78 DYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAV 157 (240)
T ss_dssp SCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSC
T ss_pred CCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 541 11222 23456677888888999999999999 899999999999999999999999
Q ss_pred ChHhHHHHHHHHHHHHh-cCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 362 DPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 362 D~~~~~~L~~all~~l~-~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
||.....+...+ ..+. +.|.|+|++||+.+ +..+|++++.+.+|++...
T Consensus 158 D~~~~~~~~~~l-~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~ 208 (240)
T 2onk_A 158 DLKTKGVLMEEL-RFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEK 208 (240)
T ss_dssp CHHHHHHHHHHH-HHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999844 4454 44889999999987 5679999999999988654
No 27
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.94 E-value=2.2e-27 Score=260.70 Aligned_cols=168 Identities=17% Similarity=0.223 Sum_probs=136.6
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------hhhceeec
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP 302 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------aq~G~~vP 302 (752)
|++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |+..+. .+.-.|+|
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 89 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDG-EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 89 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCC-CEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEe
Confidence 5899999999998765 999999999 99999999999999999999 666431 11123667
Q ss_pred CCCC--CCchH---------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCC
Q 004463 303 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG 358 (752)
Q Consensus 303 ~~~~--~~l~~---------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~ 358 (752)
+... ..+++ ++.++..+|+.+..++.+++|||||+ |++++++++.+|++|||||||
T Consensus 90 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 169 (372)
T 1v43_A 90 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPL 169 (372)
T ss_dssp C------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTT
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 6531 12222 33457778898889999999999999 899999999999999999999
Q ss_pred CCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 359 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 359 ~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
+|||+..+..+...+.+...+.|.|+|++|||.+ ...+||+++.+.+|++...
T Consensus 170 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~ 223 (372)
T 1v43_A 170 SNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQI 223 (372)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999998554443445899999999987 4579999999999988653
No 28
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.94 E-value=1.9e-27 Score=251.11 Aligned_cols=168 Identities=13% Similarity=0.127 Sum_probs=132.1
Q ss_pred CeEEEcccccccCC---eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hh
Q 004463 242 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SK 296 (752)
Q Consensus 242 ~~l~~~~ls~~y~~---~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq 296 (752)
+||+++||+++|++ ..+ ++||++.+| ++++|+||||||||||||+| |++.+. .+
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPG-KVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 58999999999976 444 999999999 99999999999999999999 666421 12
Q ss_pred hceeecCCCCC-CchHHHHH-------------------------HHHc--CCchhhhcCcccchHHHH-HHHHHHHccC
Q 004463 297 AGLYLPAKNHP-RLPWFDLI-------------------------LADI--GDHQSLEQNLSTFSGHIS-RIVDILELVS 347 (752)
Q Consensus 297 ~G~~vP~~~~~-~l~~~d~i-------------------------~~~i--g~~~~i~~~~stlSgg~k-rl~~i~~la~ 347 (752)
...|+|+.... ..++.+++ +..+ |+...+++.+++|||||+ |++++++++.
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 23477876421 12333333 2222 333445677899999999 8999999999
Q ss_pred CCcEEEEeCCCCCCChHhHHHHHHHHHHHHh-cCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 348 RESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 348 ~~~LlLLDEp~~glD~~~~~~L~~all~~l~-~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
+|+||||||||+|||+.....+.. ++..+. +.|.|+|++||+.++...|++++.+.+|.+...
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~-~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~ 237 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQR-LLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQ 237 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHH-HHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEE
T ss_pred CCCEEEEECCccCCCHHHHHHHHH-HHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999998 444554 458899999999987667999999999987643
No 29
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.94 E-value=2.7e-27 Score=245.99 Aligned_cols=165 Identities=13% Similarity=0.114 Sum_probs=128.6
Q ss_pred eEEEccccccc-CCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhhce
Q 004463 243 EMTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL 299 (752)
Q Consensus 243 ~l~~~~ls~~y-~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~G~ 299 (752)
|++++||+++| ++.++ ++||++++| ++++|+||||||||||||+| |++.+. .+.-.
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPN-SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTT-EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 57899999999 55544 999999999 99999999999999999999 665421 11223
Q ss_pred eecCCCCC-CchHH----------------HHHHHHcCCchhhh-----------cCcccchHHHH-HHHHHHHccCCCc
Q 004463 300 YLPAKNHP-RLPWF----------------DLILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSRES 350 (752)
Q Consensus 300 ~vP~~~~~-~l~~~----------------d~i~~~ig~~~~i~-----------~~~stlSgg~k-rl~~i~~la~~~~ 350 (752)
|+|+.... ..++. ..++..+++.+.++ +..++|||||+ |++++++++.+|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 67766421 11222 23344455544443 35689999999 8999999999999
Q ss_pred EEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 004463 351 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 351 LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~ 410 (752)
+|||||||+|||+.....+...+ ..+. .|.|+|++||+.+....|++++.+.+|++..
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l-~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~ 217 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKAL-DSLM-KGRTTLVIAHRLSTIVDADKIYFIEKGQITG 217 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHH-HHHH-TTSEEEEECCSHHHHHHCSEEEEEETTEECC
T ss_pred EEEEECCcccCCHHHHHHHHHHH-HHhc-CCCEEEEEeCChHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999854 4455 5899999999998667799999999998754
No 30
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.94 E-value=5.4e-27 Score=244.38 Aligned_cols=166 Identities=15% Similarity=0.130 Sum_probs=129.8
Q ss_pred eEEEccccccc--CCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hhhc
Q 004463 243 EMTVGSLSKGI--SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG 298 (752)
Q Consensus 243 ~l~~~~ls~~y--~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq~G 298 (752)
.++++||+++| ++..+ ++||++++| ++++|+||||||||||||+| |++.+. .+.-
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQG-EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 46789999999 34555 999999999 99999999999999999999 665321 1223
Q ss_pred eeecCCCCC-CchHHHH---------------HHHHcCCchhhh-----------cCcccchHHHH-HHHHHHHccCCCc
Q 004463 299 LYLPAKNHP-RLPWFDL---------------ILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSRES 350 (752)
Q Consensus 299 ~~vP~~~~~-~l~~~d~---------------i~~~ig~~~~i~-----------~~~stlSgg~k-rl~~i~~la~~~~ 350 (752)
.|+|+.... ..++.++ ++..+++.+.++ +..++|||||+ |++++++++.+|+
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 477876421 1233333 334455554444 34589999999 8999999999999
Q ss_pred EEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 351 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 351 LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
+|||||||+|||+.....+...+. .+. .|.|+|++||++++...|++++.+.+|.+...
T Consensus 166 lllLDEPts~LD~~~~~~i~~~l~-~~~-~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~ 224 (247)
T 2ff7_A 166 ILIFDEATSALDYESEHVIMRNMH-KIC-KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQ 224 (247)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHH-HHH-TTSEEEEECSSGGGGTTSSEEEEEETTEEEEE
T ss_pred EEEEeCCcccCCHHHHHHHHHHHH-HHc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999998554 455 48999999999986667999999999988654
No 31
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.94 E-value=4.3e-27 Score=258.61 Aligned_cols=168 Identities=15% Similarity=0.202 Sum_probs=137.4
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------h----------------h
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S----------------K 296 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------a----------------q 296 (752)
|++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |++.+. . +
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r 81 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDG-EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCC-CEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHC
Confidence 6889999999998765 999999999 99999999999999999999 665431 0 1
Q ss_pred hceeecCCCC--CCchHH---------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEE
Q 004463 297 AGLYLPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV 352 (752)
Q Consensus 297 ~G~~vP~~~~--~~l~~~---------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~Ll 352 (752)
.-.|+|++.. ..+++. +.++..+|+.+..++.+++|||||+ |++++++++.+|++|
T Consensus 82 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL 161 (372)
T 1g29_1 82 DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVF 161 (372)
T ss_dssp SEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 1236676641 223332 3346667888889999999999999 899999999999999
Q ss_pred EEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 353 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 353 LLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
||||||+|||+..+..+...+.+...+.|.|+|++|||.+ ...+||+++.+.+|++...
T Consensus 162 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~ 221 (372)
T 1g29_1 162 LMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV 221 (372)
T ss_dssp EEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred EECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 9999999999999999998555443445899999999987 4569999999999988654
No 32
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.94 E-value=2.6e-27 Score=258.77 Aligned_cols=168 Identities=20% Similarity=0.162 Sum_probs=137.3
Q ss_pred eEEEcccccccCCee--E--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh----------------------h
Q 004463 243 EMTVGSLSKGISDFP--V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------S 295 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~--v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~----------------------a 295 (752)
|++++||+++|++.. + ++||++.+| ++++|+||||||||||||+| |++.+. .
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENG-ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTT-CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 688999999998765 5 999999999 99999999999999999999 665431 0
Q ss_pred hhceeecCCCC--CCchH---------------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcE
Q 004463 296 KAGLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 351 (752)
Q Consensus 296 q~G~~vP~~~~--~~l~~---------------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~L 351 (752)
+.-.|+|+... ..+++ ++.++..+|+.+..++.+++|||||+ |++++++++.+|++
T Consensus 82 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~l 161 (353)
T 1oxx_K 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSL 161 (353)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 11236676541 12222 33456778888889999999999999 89999999999999
Q ss_pred EEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCCceeec
Q 004463 352 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 352 lLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
|||||||+|||+..+..+...+.+...+.|.|+|++|||.+ ...+||+++.+.+|++...
T Consensus 162 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~ 222 (353)
T 1oxx_K 162 LLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQV 222 (353)
T ss_dssp EEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999998554443445899999999987 5569999999999987643
No 33
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.94 E-value=9.8e-27 Score=244.53 Aligned_cols=162 Identities=20% Similarity=0.222 Sum_probs=132.4
Q ss_pred eEEEcccccccCC----eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------h----------hhc
Q 004463 243 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S----------KAG 298 (752)
Q Consensus 243 ~l~~~~ls~~y~~----~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------a----------q~G 298 (752)
|++++||+++|++ ..+ ++||++. | ++++|+||||||||||||+| |++ +. . ++|
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-G-e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~ 77 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-G-EKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYS 77 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-S-SEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-C-EEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheE
Confidence 5789999999986 555 9999999 9 99999999999999999999 776 42 1 122
Q ss_pred eeecCCCCCCchHH-----------------HHHHHHcCCc-hhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCC
Q 004463 299 LYLPAKNHPRLPWF-----------------DLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS 359 (752)
Q Consensus 299 ~~vP~~~~~~l~~~-----------------d~i~~~ig~~-~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~ 359 (752)
.|+|+.....+++. +.++..+|+. +..++.+++|||||+ |++++++++.+|++|||||||+
T Consensus 78 ~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts 157 (263)
T 2pjz_A 78 TNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFE 157 (263)
T ss_dssp ECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTT
T ss_pred EEeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 27777643233332 3456677888 888999999999999 8999999999999999999999
Q ss_pred CCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-Hhhhc-ccccccCCceeec
Q 004463 360 GTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKD-KDTRFENAATEFS 411 (752)
Q Consensus 360 glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~-~~~~i~~g~v~~~ 411 (752)
|||+.....+.. ++..+.+ |+|++||+++. ..+|+ +++.+.+|++...
T Consensus 158 ~LD~~~~~~l~~-~L~~~~~---tviivtHd~~~~~~~~d~~i~~l~~G~i~~~ 207 (263)
T 2pjz_A 158 NVDAARRHVISR-YIKEYGK---EGILVTHELDMLNLYKEYKAYFLVGNRLQGP 207 (263)
T ss_dssp TCCHHHHHHHHH-HHHHSCS---EEEEEESCGGGGGGCTTSEEEEEETTEEEEE
T ss_pred ccCHHHHHHHHH-HHHHhcC---cEEEEEcCHHHHHHhcCceEEEEECCEEEEe
Confidence 999999999988 4444433 99999999874 57999 9999999988653
No 34
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.94 E-value=3.8e-27 Score=240.37 Aligned_cols=158 Identities=19% Similarity=0.249 Sum_probs=126.2
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh--------------hhhceeecCC
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------SKAGLYLPAK 304 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------aq~G~~vP~~ 304 (752)
.+|+++||+++|++ ++ ++||++.+| ++++|+||||||||||||++ |++.+. .+.-.|+|+.
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~G-e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~ 86 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKG-NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEE 86 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETT-CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSS
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCC
Confidence 48999999999988 65 999999999 99999999999999999999 665431 1123477876
Q ss_pred CCC--CchHH-------------------HHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCC
Q 004463 305 NHP--RLPWF-------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 362 (752)
Q Consensus 305 ~~~--~l~~~-------------------d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD 362 (752)
... .+++. +.++..+|+.+. ++.+++|||||+ |++++++++.+|++|||||||+|||
T Consensus 87 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD 165 (214)
T 1sgw_A 87 IIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAID 165 (214)
T ss_dssp CCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSC
T ss_pred CcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCC
Confidence 421 22222 234556677666 889999999999 8999999999999999999999999
Q ss_pred hHhHHHHHHHHHHHHhcCCcEEEEEecchhH-Hhhhcccccc
Q 004463 363 PSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRF 403 (752)
Q Consensus 363 ~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i 403 (752)
|.....+...+ ..+.+.|.|+|++||+.+. ..+|++++.+
T Consensus 166 ~~~~~~l~~~l-~~~~~~g~tiiivtHd~~~~~~~~d~v~~~ 206 (214)
T 1sgw_A 166 EDSKHKVLKSI-LEILKEKGIVIISSREELSYCDVNENLHKY 206 (214)
T ss_dssp TTTHHHHHHHH-HHHHHHHSEEEEEESSCCTTSSEEEEGGGG
T ss_pred HHHHHHHHHHH-HHHHhCCCEEEEEeCCHHHHHHhCCEEEEe
Confidence 99999999844 4555557899999999874 4567766544
No 35
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.94 E-value=6.9e-27 Score=246.30 Aligned_cols=168 Identities=21% Similarity=0.198 Sum_probs=133.2
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhh--hh-------------------hhhh
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SL-------------------MSKA 297 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli--~~-------------------~aq~ 297 (752)
.|++++||+++|++.++ ++||++.+| ++++|+||||||||||||+| |++ .+ ..+.
T Consensus 19 ~~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 19 HMLSIKDLHVSVEDKAILRGLSLDVHPG-EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred ceEEEEeEEEEECCEEEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 47999999999988766 999999999 99999999999999999999 773 11 0122
Q ss_pred -ceeecCCCCC--CchH----------------------------HHHHHHHcCCc-hhhhcCcc-cchHHHH-HHHHHH
Q 004463 298 -GLYLPAKNHP--RLPW----------------------------FDLILADIGDH-QSLEQNLS-TFSGHIS-RIVDIL 343 (752)
Q Consensus 298 -G~~vP~~~~~--~l~~----------------------------~d~i~~~ig~~-~~i~~~~s-tlSgg~k-rl~~i~ 343 (752)
..|+|+.... .+++ ++.++..+|+. +..++.++ +|||||+ |+++++
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAr 177 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ 177 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHH
T ss_pred CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHH
Confidence 2467776421 1111 12345566775 45677776 5999999 899999
Q ss_pred HccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHh-h-hcccccccCCceeec
Q 004463 344 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC-L-KDKDTRFENAATEFS 411 (752)
Q Consensus 344 ~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~-~-a~~~~~i~~g~v~~~ 411 (752)
+++.+|+||||||||+|||+.....+.. ++..+.+.|.|+|++||+.++.. + |++++.+.+|++...
T Consensus 178 aL~~~p~lLlLDEPts~LD~~~~~~l~~-~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 178 MAVLEPELCILDESDSGLDIDALKVVAD-GVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHH-HHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEE
Confidence 9999999999999999999999999998 55556666899999999988654 4 899999999988654
No 36
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.94 E-value=5.7e-27 Score=241.46 Aligned_cols=167 Identities=16% Similarity=0.121 Sum_probs=127.8
Q ss_pred CeEEEcccccccC--CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------hhhceeecCCCCC-C
Q 004463 242 SEMTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------SKAGLYLPAKNHP-R 308 (752)
Q Consensus 242 ~~l~~~~ls~~y~--~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------aq~G~~vP~~~~~-~ 308 (752)
+|++++||+++|+ +.++ ++||++++| ++++|+||||||||||||+| |++.+. .++ .|+|+.... .
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i-~~v~q~~~~~~ 82 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERG-QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI-SFCSQFSWIMP 82 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCE-EEECSSCCCCS
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEE-EEEecCCcccC
Confidence 4789999999995 3444 999999999 99999999999999999999 666442 222 367776421 1
Q ss_pred chHHHHH--------------HHHcCCchhhh-----------cCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCC
Q 004463 309 LPWFDLI--------------LADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD 362 (752)
Q Consensus 309 l~~~d~i--------------~~~ig~~~~i~-----------~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD 362 (752)
.++.+++ +..++..+.++ +..++|||||+ |++++++++.+|+++||||||+|||
T Consensus 83 ~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD 162 (229)
T 2pze_A 83 GTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 162 (229)
T ss_dssp BCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSC
T ss_pred CCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCC
Confidence 2333333 22334333222 23589999999 8999999999999999999999999
Q ss_pred hHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 363 PSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 363 ~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
+.....+...++..+. .+.|+|++||+.+....|++++.+.+|++...
T Consensus 163 ~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~ 210 (229)
T 2pze_A 163 VLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFY 210 (229)
T ss_dssp HHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHhh-CCCEEEEEcCChHHHHhCCEEEEEECCEEEEE
Confidence 9999988874343333 37899999999886667999999999988654
No 37
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.94 E-value=1.4e-26 Score=241.51 Aligned_cols=164 Identities=18% Similarity=0.228 Sum_probs=134.0
Q ss_pred eEEEcccccccCCeeE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------------------hhhceeec
Q 004463 243 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP 302 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------------------aq~G~~vP 302 (752)
|++++||+++ ..+ ++||++.+| ++++|+||||||||||||++ |++.+. .+.-.|+|
T Consensus 4 ~l~~~~l~~~---~vl~~vsl~i~~G-e~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~ 79 (249)
T 2qi9_C 4 VMQLQDVAES---TRLGPLSGEVRAG-EILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLS 79 (249)
T ss_dssp EEEEEEEEET---TTEEEEEEEEETT-CEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred EEEEEceEEE---EEEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEEC
Confidence 6889999987 234 999999999 99999999999999999999 775320 11234777
Q ss_pred CCCC--CCchH----------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCc-------EEEEeC
Q 004463 303 AKNH--PRLPW----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES-------LVLIDE 356 (752)
Q Consensus 303 ~~~~--~~l~~----------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~-------LlLLDE 356 (752)
+... ..+++ ++.++..+|+.+..++.+++|||||+ |++++++++.+|+ +|||||
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDE 159 (249)
T 2qi9_C 80 QQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDE 159 (249)
T ss_dssp SCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESS
T ss_pred CCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEEC
Confidence 7642 11222 34456778888888999999999999 8999999999999 999999
Q ss_pred CCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccCCceeec
Q 004463 357 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 357 p~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
||+|||+.....+.. ++..+.+.|.|+|++||+.+. ..+|++++.+.+|++...
T Consensus 160 Pts~LD~~~~~~l~~-~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 214 (249)
T 2qi9_C 160 PMNSLDVAQQSALDK-ILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLAS 214 (249)
T ss_dssp TTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred CcccCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999998 455565558899999999885 479999999999988653
No 38
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.93 E-value=9.4e-27 Score=241.06 Aligned_cols=166 Identities=15% Similarity=0.149 Sum_probs=127.6
Q ss_pred eEEEcccccccC--CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------hhhceeecCCCC-CCc
Q 004463 243 EMTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------SKAGLYLPAKNH-PRL 309 (752)
Q Consensus 243 ~l~~~~ls~~y~--~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------aq~G~~vP~~~~-~~l 309 (752)
|++++||+++|+ +.++ ++||++.+| ++++|+||||||||||||+| |++.+. .++ .|+|+... ...
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i-~~v~Q~~~~~~~ 80 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEG-ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSV-AYVPQQAWIQND 80 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCE-EEECSSCCCCSE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE-EEEcCCCcCCCc
Confidence 688999999997 3444 999999999 99999999999999999999 666432 222 36777642 122
Q ss_pred hHHHHH--------------HHHcCCch-----------hhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCCh
Q 004463 310 PWFDLI--------------LADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP 363 (752)
Q Consensus 310 ~~~d~i--------------~~~ig~~~-----------~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~ 363 (752)
++.+++ ...++..+ .+.+.+++|||||+ |++++++++.+|++|||||||+|||+
T Consensus 81 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~ 160 (237)
T 2cbz_A 81 SLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 160 (237)
T ss_dssp EHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCH
T ss_pred CHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 333333 22222211 24567899999999 89999999999999999999999999
Q ss_pred HhHHHHHHHHH--HHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 364 SEGVALATSIL--QYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 364 ~~~~~L~~all--~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
.....+...+. ..+. .+.|+|++||+.+...+|++++.+.+|.+...
T Consensus 161 ~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~ 209 (237)
T 2cbz_A 161 HVGKHIFENVIGPKGML-KNKTRILVTHSMSYLPQVDVIIVMSGGKISEM 209 (237)
T ss_dssp HHHHHHHHHTTSTTSTT-TTSEEEEECSCSTTGGGSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHhhc-CCCEEEEEecChHHHHhCCEEEEEeCCEEEEe
Confidence 99999888443 2233 47899999999886668999999999987643
No 39
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.93 E-value=4.3e-26 Score=239.28 Aligned_cols=167 Identities=13% Similarity=0.078 Sum_probs=129.5
Q ss_pred CeEEEcccccccCCe---e-E-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh------------------hhhh
Q 004463 242 SEMTVGSLSKGISDF---P-V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKA 297 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~---~-v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------------------~aq~ 297 (752)
.|++++||+++|++. + + ++||++++| ++++|+||||||||||||+| |++.. ..+.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSG-TTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCC-CEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhcc
Confidence 478999999999762 3 3 999999999 99999999999999999999 66532 0112
Q ss_pred ceeecCCCCC-CchHHHHH---------------HHHcCCchhh-----------hcCcccchHHHH-HHHHHHHccCCC
Q 004463 298 GLYLPAKNHP-RLPWFDLI---------------LADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRE 349 (752)
Q Consensus 298 G~~vP~~~~~-~l~~~d~i---------------~~~ig~~~~i-----------~~~~stlSgg~k-rl~~i~~la~~~ 349 (752)
-.|+|+.... ..++.+++ +..+++.+.+ .+.+++|||||+ |++++++++.+|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 3477776421 12333333 2333443322 345789999999 899999999999
Q ss_pred cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 350 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 350 ~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
++|||||||+|||+.....+.. ++..+.+ +.|+|++||+.++...|++++.+.+|++...
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~-~l~~l~~-~~tviivtH~~~~~~~~d~i~~l~~G~i~~~ 234 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQK-AVEDLRK-NRTLIIIAHRLSTISSAESIILLNKGKIVEK 234 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHH-HHHHHTT-TSEEEEECSSGGGSTTCSEEEEEETTEEEEE
T ss_pred CEEEEECccccCCHHHHHHHHH-HHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999988 4555654 7899999999886667999999999987643
No 40
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.93 E-value=6e-26 Score=243.26 Aligned_cols=167 Identities=15% Similarity=0.181 Sum_probs=130.2
Q ss_pred CeEEEcccccccC-CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------------------hhhhc
Q 004463 242 SEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG 298 (752)
Q Consensus 242 ~~l~~~~ls~~y~-~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------~aq~G 298 (752)
+.|+++||+|+|+ +..+ ++||++++| ++++|+||||||||||||+| |++.+ +.+.-
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~G-e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i 130 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPG-QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTT-CEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCC-CEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence 4688999999995 4455 999999999 99999999999999999999 66532 12233
Q ss_pred eeecCCCCC-CchHHHHH---------------HHHcCCchhh-----------hcCcccchHHHH-HHHHHHHccCCCc
Q 004463 299 LYLPAKNHP-RLPWFDLI---------------LADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRES 350 (752)
Q Consensus 299 ~~vP~~~~~-~l~~~d~i---------------~~~ig~~~~i-----------~~~~stlSgg~k-rl~~i~~la~~~~ 350 (752)
.|+|++... ..++.+++ +...++.+.+ .....+|||||+ |+++|++++.+|+
T Consensus 131 ~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~ 210 (306)
T 3nh6_A 131 GVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPG 210 (306)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCC
Confidence 478887521 12333333 2333333333 345579999999 8999999999999
Q ss_pred EEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 351 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 351 LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
+|||||||++||+.....+...+.+ +.. +.|+|++||+++....||+++.+.+|++...
T Consensus 211 iLlLDEPts~LD~~~~~~i~~~l~~-l~~-~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~ 269 (306)
T 3nh6_A 211 IILLDEATSALDTSNERAIQASLAK-VCA-NRTTIVVAHRLSTVVNADQILVIKDGCIVER 269 (306)
T ss_dssp EEEEECCSSCCCHHHHHHHHHHHHH-HHT-TSEEEEECCSHHHHHTCSEEEEEETTEEEEE
T ss_pred EEEEECCcccCCHHHHHHHHHHHHH-HcC-CCEEEEEEcChHHHHcCCEEEEEECCEEEEE
Confidence 9999999999999999999885544 544 6899999999987667999999999998754
No 41
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.91 E-value=7.1e-25 Score=242.11 Aligned_cols=167 Identities=16% Similarity=0.127 Sum_probs=134.9
Q ss_pred CeEEEccccccc--CCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh------------------hhhhc
Q 004463 242 SEMTVGSLSKGI--SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAG 298 (752)
Q Consensus 242 ~~l~~~~ls~~y--~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~------------------~aq~G 298 (752)
++|+++||+|.| ++..+ ++||++.+| ++++|+||||||||||||+| |+... +.+.-
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPG-QRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTT-CEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTE
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCC-CEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCE
Confidence 578999999999 55444 999999999 99999999999999999999 66431 11223
Q ss_pred eeecCCCCC-CchH--------------HHHHHHHcCCchhhhcCccc-----------chHHHH-HHHHHHHccCCCcE
Q 004463 299 LYLPAKNHP-RLPW--------------FDLILADIGDHQSLEQNLST-----------FSGHIS-RIVDILELVSRESL 351 (752)
Q Consensus 299 ~~vP~~~~~-~l~~--------------~d~i~~~ig~~~~i~~~~st-----------lSgg~k-rl~~i~~la~~~~L 351 (752)
.++|++... ..++ +..++..+++.+.+++.+.. |||||+ |++++++++.+|++
T Consensus 97 g~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~l 176 (390)
T 3gd7_A 97 GVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 176 (390)
T ss_dssp EEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred EEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCE
Confidence 477776421 1233 33456778888888888887 999999 89999999999999
Q ss_pred EEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 352 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 352 lLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
|||||||+|||+..+..+...+ ..+. .+.|+|++||+.+....||+++.+.+|++...
T Consensus 177 LLLDEPts~LD~~~~~~l~~~l-~~~~-~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~ 234 (390)
T 3gd7_A 177 LLLDEPSAHLDPVTYQIIRRTL-KQAF-ADCTVILCEARIEAMLECDQFLVIEENKVRQY 234 (390)
T ss_dssp EEEESHHHHSCHHHHHHHHHHH-HTTT-TTSCEEEECSSSGGGTTCSEEEEEETTEEEEE
T ss_pred EEEeCCccCCCHHHHHHHHHHH-HHHh-CCCEEEEEEcCHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999888744 4333 47899999999887678999999999988654
No 42
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.91 E-value=1.3e-24 Score=231.49 Aligned_cols=166 Identities=15% Similarity=0.095 Sum_probs=115.9
Q ss_pred CeEEEcccccccCCeeE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------hhhceeecCCCCC-CchH
Q 004463 242 SEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------SKAGLYLPAKNHP-RLPW 311 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------aq~G~~vP~~~~~-~l~~ 311 (752)
.+++++||++.+ ...+ ++||++++| ++++|+||||||||||||+| |++.+. .++ .|+|+.... ..++
T Consensus 39 ~~l~~~~l~~~~-~~vl~~isl~i~~G-e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i-~~v~Q~~~l~~~tv 115 (290)
T 2bbs_A 39 DSLSFSNFSLLG-TPVLKDINFKIERG-QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI-SFCSQNSWIMPGTI 115 (290)
T ss_dssp -----------C-CCSEEEEEEEECTT-CEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCE-EEECSSCCCCSSBH
T ss_pred ceEEEEEEEEcC-ceEEEeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEE-EEEeCCCccCcccH
Confidence 467889999865 2234 999999999 99999999999999999999 666432 222 367776421 1244
Q ss_pred HHHHH-------------HHcCCchhhh-----------cCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhH
Q 004463 312 FDLIL-------------ADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG 366 (752)
Q Consensus 312 ~d~i~-------------~~ig~~~~i~-----------~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~ 366 (752)
.+++. ..+++.+.++ ...++|||||+ |++++++++.+|++|||||||+|||+...
T Consensus 116 ~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~ 195 (290)
T 2bbs_A 116 KENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 195 (290)
T ss_dssp HHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHH
T ss_pred HHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHH
Confidence 45443 2233333222 23479999999 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 367 VALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 367 ~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
..+...++..+. .+.|+|++||+++....|++++.+.+|.+...
T Consensus 196 ~~i~~~ll~~~~-~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~ 239 (290)
T 2bbs_A 196 KEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFY 239 (290)
T ss_dssp HHHHHHCCCCCT-TTSEEEEECCCHHHHHHSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHhh-CCCEEEEEecCHHHHHcCCEEEEEECCeEEEe
Confidence 988874333333 37899999999986678999999999988653
No 43
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.90 E-value=7.8e-24 Score=243.65 Aligned_cols=164 Identities=21% Similarity=0.265 Sum_probs=129.9
Q ss_pred CCeEEEcccccccCCeeE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------hhhceeecCCCCC--Cch
Q 004463 241 NSEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------SKAGLYLPAKNHP--RLP 310 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------aq~G~~vP~~~~~--~l~ 310 (752)
..+++++|+++.|++..+ .++|++.+| ++++|+||||||||||||+| |++.+. ...-.|+|+.... .++
T Consensus 285 ~~~l~~~~l~~~~~~~~l~~~~~~i~~G-e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~t 363 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGSFRLEVEPGEIKKG-EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGT 363 (538)
T ss_dssp CEEEEECCEEEEETTEEEEECCEEEETT-CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSB
T ss_pred CeEEEEeeEEEEECCEEEEeCccccCCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCc
Confidence 347889999999988655 778999999 99999999999999999999 665432 1112367776421 222
Q ss_pred HHH-----------------HHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHH
Q 004463 311 WFD-----------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATS 372 (752)
Q Consensus 311 ~~d-----------------~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~a 372 (752)
+.+ .++..+++.+..++.+++|||||+ |++++++++.+|+||||||||+|||+.....+...
T Consensus 364 v~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~ 443 (538)
T 1yqt_A 364 VYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA 443 (538)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 222 223345667778899999999999 89999999999999999999999999999999995
Q ss_pred HHHHHhcCCcEEEEEecchh-HHhhhcccccccC
Q 004463 373 ILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN 405 (752)
Q Consensus 373 ll~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~ 405 (752)
+.+...+.|.|+|++|||.+ +..+|++++.+.+
T Consensus 444 l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~ 477 (538)
T 1yqt_A 444 IRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEG 477 (538)
T ss_dssp HHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 55443456899999999988 4569999988875
No 44
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.90 E-value=4.5e-24 Score=245.29 Aligned_cols=164 Identities=21% Similarity=0.270 Sum_probs=129.4
Q ss_pred CCeEEEcccccccCCeeE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------hhhceeecCCCCC--Cc
Q 004463 241 NSEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------SKAGLYLPAKNHP--RL 309 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------aq~G~~vP~~~~~--~l 309 (752)
..+++++++++.|++..+ .+++++.+| ++++|+||||||||||||+| |++.+. .+.-.++|+.... ..
T Consensus 267 ~~~l~~~~l~~~~~~~~l~~~~~~i~~G-ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~ 345 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGDFQLVVDNGEAKEG-EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDG 345 (538)
T ss_dssp CEEEEECCEEEEETTEEEEECCEEEETT-CEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSS
T ss_pred cceEEEcceEEEECCEEEEeccceECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCC
Confidence 357889999999998655 668999999 99999999999999999999 555432 1112355554321 22
Q ss_pred hHHH------------------HHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHH
Q 004463 310 PWFD------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALA 370 (752)
Q Consensus 310 ~~~d------------------~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~ 370 (752)
++.+ .++..+++.+..++.+++|||||+ |++++++++.+|++|||||||+|||+.....+.
T Consensus 346 tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~ 425 (538)
T 3ozx_A 346 TVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVA 425 (538)
T ss_dssp BHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHH
T ss_pred CHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH
Confidence 3333 333445666778899999999999 899999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEEecchhH-HhhhcccccccC
Q 004463 371 TSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFEN 405 (752)
Q Consensus 371 ~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~ 405 (752)
..+.+...+.|.|+|++|||+++ ..+||+++.+.+
T Consensus 426 ~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 426 KAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKG 461 (538)
T ss_dssp HHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 95555444568999999999885 558999988875
No 45
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.90 E-value=1.4e-23 Score=244.34 Aligned_cols=164 Identities=21% Similarity=0.241 Sum_probs=131.8
Q ss_pred CCeEEEcccccccCCeeE-eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh------hhhceeecCCCCC--Cch
Q 004463 241 NSEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------SKAGLYLPAKNHP--RLP 310 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~~v-~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~------aq~G~~vP~~~~~--~l~ 310 (752)
..+++++|+++.|++..+ .++|++.+| ++++|+||||||||||||+| |++.+. ...-.|+|+.... .++
T Consensus 355 ~~~l~~~~l~~~~~~~~l~~~~~~v~~G-ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~t 433 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGSFKLEVEPGEIRKG-EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGT 433 (607)
T ss_dssp CEEEEECCEEEECSSCEEEECCEEEETT-CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSB
T ss_pred ceEEEEeceEEEecceEEEecccccCCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCc
Confidence 357889999999987555 778899999 99999999999999999999 665432 1122467776421 122
Q ss_pred H-----------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHH
Q 004463 311 W-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATS 372 (752)
Q Consensus 311 ~-----------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~a 372 (752)
+ ++.++..+|+.+..++.+++|||||+ |++++++++.+|+||||||||+|||+.....+...
T Consensus 434 v~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~ 513 (607)
T 3bk7_A 434 VYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA 513 (607)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 2 12345667888888999999999999 89999999999999999999999999999999995
Q ss_pred HHHHHhcCCcEEEEEecchhH-HhhhcccccccC
Q 004463 373 ILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFEN 405 (752)
Q Consensus 373 ll~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~ 405 (752)
+.+...+.|.|+|++|||.++ ..+||+++.+.+
T Consensus 514 l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~ 547 (607)
T 3bk7_A 514 IRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG 547 (607)
T ss_dssp HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 554434568999999999884 568999988864
No 46
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.90 E-value=1.1e-23 Score=244.84 Aligned_cols=168 Identities=14% Similarity=0.146 Sum_probs=129.9
Q ss_pred CCeEEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hh
Q 004463 241 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SK 296 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq 296 (752)
.++++++||+++|++ .++ ++||++++| ++++|+||||||||||+|++ |+..+. .+
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G-~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~ 417 (582)
T 3b5x_A 339 NGEVDVKDVTFTYQGKEKPALSHVSFSIPQG-KTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRR 417 (582)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhc
Confidence 368999999999974 445 999999999 99999999999999999999 555321 11
Q ss_pred hceeecCCCCC-CchHHH----------------HHHHHcCCchhhh-----------cCcccchHHHH-HHHHHHHccC
Q 004463 297 AGLYLPAKNHP-RLPWFD----------------LILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVS 347 (752)
Q Consensus 297 ~G~~vP~~~~~-~l~~~d----------------~i~~~ig~~~~i~-----------~~~stlSgg~k-rl~~i~~la~ 347 (752)
.-.++|++... ..++.+ .++..++..+.++ ....+|||||+ |++++++++.
T Consensus 418 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~ 497 (582)
T 3b5x_A 418 HFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLR 497 (582)
T ss_pred CeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHc
Confidence 23467776410 112222 2333344444333 34589999999 8999999999
Q ss_pred CCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 348 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 348 ~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
+|+++||||||++||+.....+...+. .+.+ |.|+|++||+.+....||+++.+.+|++...
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~~~l~-~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 559 (582)
T 3b5x_A 498 DAPVLILDEATSALDTESERAIQAALD-ELQK-NKTVLVIAHRLSTIEQADEILVVDEGEIIER 559 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHH-HHcC-CCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999988554 4554 8899999999987678999999999987643
No 47
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.89 E-value=1.8e-23 Score=240.58 Aligned_cols=157 Identities=20% Similarity=0.189 Sum_probs=122.0
Q ss_pred cccccccCCee-E--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh-h-------------------------
Q 004463 247 GSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-K------------------------- 296 (752)
Q Consensus 247 ~~ls~~y~~~~-v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a-q------------------------- 296 (752)
+||+++|++.. + ++| ++.+| ++++|+||||||||||||+| |++.+-. .
T Consensus 25 ~~ls~~yg~~~~~l~~vs-~i~~G-e~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~ 102 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLP-VVKEG-MVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102 (538)
T ss_dssp CCEEEECSTTCCEEECCC-CCCTT-SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHH
T ss_pred cCcEEEECCccccccCcC-cCCCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHH
Confidence 58999998753 4 777 89999 99999999999999999999 5542210 0
Q ss_pred ---hc-eeecCCCC--C---Cch------------HHHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEE
Q 004463 297 ---AG-LYLPAKNH--P---RLP------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 354 (752)
Q Consensus 297 ---~G-~~vP~~~~--~---~l~------------~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLL 354 (752)
.+ .++|+... . ... .++.++..+|+.+..++.+++|||||+ |++++++++.+|+||||
T Consensus 103 ~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlL 182 (538)
T 1yqt_A 103 NGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFF 182 (538)
T ss_dssp TTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred HHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 00 12222110 0 001 134567888988889999999999999 89999999999999999
Q ss_pred eCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCC
Q 004463 355 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENA 406 (752)
Q Consensus 355 DEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g 406 (752)
||||+|||+.....+.. +++.+.+.|.|+|++|||++ +..+|++++.+.++
T Consensus 183 DEPTs~LD~~~~~~l~~-~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 183 DEPSSYLDIRQRLNAAR-AIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp ESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred ECCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 99999999999999988 55556667899999999988 55689998877543
No 48
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.89 E-value=1.4e-23 Score=244.08 Aligned_cols=168 Identities=15% Similarity=0.154 Sum_probs=131.1
Q ss_pred CCeEEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hh
Q 004463 241 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SK 296 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq 296 (752)
.++++++||+++|++ .++ ++||++++| ++++|+||||||||||+|++ |+..+. .+
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G-~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~ 417 (582)
T 3b60_A 339 TGDLEFRNVTFTYPGREVPALRNINLKIPAG-KTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 417 (582)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTT-CEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCcEEEEEEEEEcCCCCCccccceeEEEcCC-CEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHh
Confidence 468999999999973 444 999999999 99999999999999999999 665431 12
Q ss_pred hceeecCCCCC-CchHHHHH----------------HHHcCCchhhh-----------cCcccchHHHH-HHHHHHHccC
Q 004463 297 AGLYLPAKNHP-RLPWFDLI----------------LADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVS 347 (752)
Q Consensus 297 ~G~~vP~~~~~-~l~~~d~i----------------~~~ig~~~~i~-----------~~~stlSgg~k-rl~~i~~la~ 347 (752)
.-.++|++... ..++.+++ +..++..+.++ ....+|||||+ |++++++++.
T Consensus 418 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~ 497 (582)
T 3b60_A 418 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred hCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh
Confidence 23578887521 11333333 33334433333 34589999999 8999999999
Q ss_pred CCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 348 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 348 ~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
+|+++||||||++||+.....+...+. .+.+ |.|+|++||+++....||+++.+.+|++...
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~~~l~-~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 559 (582)
T 3b60_A 498 DSPILILDEATSALDTESERAIQAALD-ELQK-NRTSLVIAHRLSTIEQADEIVVVEDGIIVER 559 (582)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHH-HHHT-TSEEEEECSCGGGTTTCSEEEEEETTEEEEE
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHH-HHhC-CCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999988554 4554 8899999999987678999999999988643
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.89 E-value=3.4e-23 Score=241.10 Aligned_cols=156 Identities=21% Similarity=0.204 Sum_probs=122.1
Q ss_pred cccccccCCee-E--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh-h-------------------------
Q 004463 247 GSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-K------------------------- 296 (752)
Q Consensus 247 ~~ls~~y~~~~-v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a-q------------------------- 296 (752)
+||+++|++.. + ++| ++.+| ++++|+||||||||||||+| |++.+.. .
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~G-e~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~ 172 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDG-MVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLK 172 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTT-SEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCC-CEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhh
Confidence 89999998753 4 777 88999 99999999999999999999 5543210 0
Q ss_pred ---h-ceeecCCCC-----CCch------------HHHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEE
Q 004463 297 ---A-GLYLPAKNH-----PRLP------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI 354 (752)
Q Consensus 297 ---~-G~~vP~~~~-----~~l~------------~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLL 354 (752)
. ..++|+... ...+ .++.++..+|+.+..++.+++|||||+ |++++++++.+|++|||
T Consensus 173 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlL 252 (607)
T 3bk7_A 173 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFF 252 (607)
T ss_dssp HTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred hhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 0 012222100 0001 135677888998889999999999999 89999999999999999
Q ss_pred eCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH-HhhhcccccccC
Q 004463 355 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFEN 405 (752)
Q Consensus 355 DEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~ 405 (752)
||||+|||+.....+.. +++.+.+.|.|+|++|||+++ ..+|++++.+.+
T Consensus 253 DEPTs~LD~~~~~~l~~-~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~ 303 (607)
T 3bk7_A 253 DEPSSYLDIRQRLKVAR-VIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYG 303 (607)
T ss_dssp ECTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEES
T ss_pred ECCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEecChHHHHhhCCEEEEECC
Confidence 99999999999999998 556566668999999999884 568898877754
No 50
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.89 E-value=4.6e-23 Score=240.27 Aligned_cols=167 Identities=13% Similarity=0.129 Sum_probs=129.1
Q ss_pred Ce-EEEcccccccCC---eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------h
Q 004463 242 SE-MTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------S 295 (752)
Q Consensus 242 ~~-l~~~~ls~~y~~---~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------a 295 (752)
+. ++++||+++|++ .++ ++||++++| ++++|+||||||||||+|++ |+..+. .
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G-~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~ 417 (595)
T 2yl4_A 339 QGALEFKNVHFAYPARPEVPIFQDFSLSIPSG-SVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLR 417 (595)
T ss_dssp CCCEEEEEEEEECSSCTTSEEEEEEEEEECTT-CEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHH
T ss_pred CCeEEEEEEEEEeCCCCCCccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHH
Confidence 45 899999999974 244 999999999 99999999999999999999 665321 1
Q ss_pred hhceeecCCCCC-CchHHHH------------------HHHHcCCchhhh-----------cCcccchHHHH-HHHHHHH
Q 004463 296 KAGLYLPAKNHP-RLPWFDL------------------ILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILE 344 (752)
Q Consensus 296 q~G~~vP~~~~~-~l~~~d~------------------i~~~ig~~~~i~-----------~~~stlSgg~k-rl~~i~~ 344 (752)
+.-.++|++... ..++.++ ++..++..+.++ ....+|||||+ |++++++
T Consensus 418 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAra 497 (595)
T 2yl4_A 418 SKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARA 497 (595)
T ss_dssp HSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHH
T ss_pred hceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHH
Confidence 223477876521 1123333 334444443332 23489999999 8999999
Q ss_pred ccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 345 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 345 la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
++.+|+++||||||++||+.....+...+ ..+.+ +.|+|++||+.+....||+++.+.+|++...
T Consensus 498 l~~~p~illlDEpts~LD~~~~~~i~~~l-~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 562 (595)
T 2yl4_A 498 LLKNPKILLLDEATSALDAENEYLVQEAL-DRLMD-GRTVLVIAHRLSTIKNANMVAVLDQGKITEY 562 (595)
T ss_dssp HHHCCSEEEEECCCSSCCHHHHHHHHHHH-HHHHT-TSEEEEECCCHHHHHHSSEEEEEETTEEEEE
T ss_pred HHcCCCEEEEECcccCCCHHHHHHHHHHH-HHHhc-CCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999988844 44555 7899999999987678999999999988653
No 51
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=99.88 E-value=2.4e-23 Score=180.33 Aligned_cols=75 Identities=35% Similarity=0.511 Sum_probs=71.4
Q ss_pred CCceeeccccHHHHHHHHHHHHHcc--CCCCcEEEEecccchHHHHHHHHHhhcCCCcccccCCCCCCC--ceEEEEEC
Q 004463 678 KNSLDLRGMRVEEASHQLDIALACW--ESRSVLFVIHGMGTGVVKERVLEILRNHPRVAKYEQESPMNY--GCTVAYIK 752 (752)
Q Consensus 678 ~~~ldlrG~r~eeA~~~vd~~ld~~--~~~~~v~IiHG~GtG~Lr~~v~~~L~~~p~V~~~~~~~~~~~--G~tvv~~~ 752 (752)
+.+|||||||+|||..+|++|||+| .|++.|+||||||||+||++|++||++||+|.+|++|++++| |+|+|+||
T Consensus 4 ~~~lDLhG~~~~eA~~~l~~fl~~a~~~g~~~v~IIHGkG~GvLr~~V~~~L~~~~~V~~f~~a~~~~GG~Gat~V~Lk 82 (83)
T 2zqe_A 4 VKEVDLRGLTVAEALLEVDQALEEARALGLSTLRLLHGKGTGALRQAIREALRRDKRVESFADAPPGEGGHGVTVVALR 82 (83)
T ss_dssp CCEEECTTCCHHHHHHHHHHHHHHHHHTTCSEEEEECCSTTSHHHHHHHHHHHHCTTEEEEEECCTTTTGGGEEEEEEC
T ss_pred ccEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhcCCceeEEEEcCcccCCCEEEEEEEe
Confidence 3589999999999999999999997 899999999999999999999999999999999999999975 79999986
No 52
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.88 E-value=3.6e-23 Score=241.23 Aligned_cols=168 Identities=12% Similarity=0.114 Sum_probs=130.1
Q ss_pred CCeEEEcccccccCC-eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------------------hhhh
Q 004463 241 NSEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA 297 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~-~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------~aq~ 297 (752)
.+.++++||+++|++ .++ ++||++++| ++++|+||||||||||+|++ |+..+ +.+.
T Consensus 352 ~~~i~~~~v~~~y~~~~~~l~~isl~i~~G-~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~ 430 (598)
T 3qf4_B 352 RGEIEFKNVWFSYDKKKPVLKDITFHIKPG-QKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSS 430 (598)
T ss_dssp CCCEEEEEEECCSSSSSCSCCSEEEECCTT-CEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred CCeEEEEEEEEECCCCCccccceEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhc
Confidence 356899999999974 444 999999999 99999999999999999999 66532 1122
Q ss_pred ceeecCCCCC-CchHHHHHH---------------HHcCCchhhhc-----------CcccchHHHH-HHHHHHHccCCC
Q 004463 298 GLYLPAKNHP-RLPWFDLIL---------------ADIGDHQSLEQ-----------NLSTFSGHIS-RIVDILELVSRE 349 (752)
Q Consensus 298 G~~vP~~~~~-~l~~~d~i~---------------~~ig~~~~i~~-----------~~stlSgg~k-rl~~i~~la~~~ 349 (752)
-.++||+... ..++.+++. ...+..+.++. ...+|||||+ |++++++++.+|
T Consensus 431 i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p 510 (598)
T 3qf4_B 431 IGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANP 510 (598)
T ss_dssp EEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCC
T ss_pred eEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 3477877521 123444442 11223333333 2378999999 899999999999
Q ss_pred cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 350 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 350 ~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
++|||||||++||+.....+...+.+ +. .|.|+|++||+.+....||+++.+.+|++...
T Consensus 511 ~illlDEpts~LD~~~~~~i~~~l~~-~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~ 570 (598)
T 3qf4_B 511 KILILDEATSNVDTKTEKSIQAAMWK-LM-EGKTSIIIAHRLNTIKNADLIIVLRDGEIVEM 570 (598)
T ss_dssp SEEEECCCCTTCCHHHHHHHHHHHHH-HH-TTSEEEEESCCTTHHHHCSEEEEECSSSEEEC
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHH-Hc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999885544 44 48999999999997777999999999998654
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.88 E-value=3.1e-23 Score=249.95 Aligned_cols=95 Identities=18% Similarity=0.188 Sum_probs=79.9
Q ss_pred HHHHHHcCCchh--hhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEec
Q 004463 313 DLILADIGDHQS--LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTH 389 (752)
Q Consensus 313 d~i~~~ig~~~~--i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH 389 (752)
+.++..+|+... .++.+++|||||+ |++++++++.+|+||||||||+|||+.....+...+ .+.+++||++||
T Consensus 881 ~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L----~~~g~tVIiISH 956 (986)
T 2iw3_A 881 EEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKAL----KEFEGGVIIITH 956 (986)
T ss_dssp HHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHH----HSCSSEEEEECS
T ss_pred HHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHH----HHhCCEEEEEEC
Confidence 456777888653 5789999999999 899999999999999999999999999877776643 444789999999
Q ss_pred chhH-HhhhcccccccCCceeec
Q 004463 390 YADL-SCLKDKDTRFENAATEFS 411 (752)
Q Consensus 390 ~~~l-~~~a~~~~~i~~g~v~~~ 411 (752)
|.++ ..+|++++.+.+|++...
T Consensus 957 D~e~v~~l~DrVivL~~G~Iv~~ 979 (986)
T 2iw3_A 957 SAEFTKNLTEEVWAVKDGRMTPS 979 (986)
T ss_dssp CHHHHTTTCCEEECCBTTBCCC-
T ss_pred CHHHHHHhCCEEEEEECCEEEEe
Confidence 9885 569999999999987654
No 54
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.88 E-value=4.9e-23 Score=239.23 Aligned_cols=168 Identities=16% Similarity=0.180 Sum_probs=129.6
Q ss_pred CCeEEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------------------hh
Q 004463 241 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SK 296 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------------------aq 296 (752)
.+.++++||+++|++ .++ ++||++++| ++++|+||||||||||+|++ |+..+. .+
T Consensus 337 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G-~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~ 415 (578)
T 4a82_A 337 QGRIDIDHVSFQYNDNEAPILKDINLSIEKG-ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 415 (578)
T ss_dssp SCCEEEEEEEECSCSSSCCSEEEEEEEECTT-CEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CCeEEEEEEEEEcCCCCCcceeeeEEEECCC-CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence 356899999999964 334 999999999 99999999999999999999 665431 12
Q ss_pred hceeecCCCCC-CchHHHHH---------------HHHcCCchhh-----------hcCcccchHHHH-HHHHHHHccCC
Q 004463 297 AGLYLPAKNHP-RLPWFDLI---------------LADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSR 348 (752)
Q Consensus 297 ~G~~vP~~~~~-~l~~~d~i---------------~~~ig~~~~i-----------~~~~stlSgg~k-rl~~i~~la~~ 348 (752)
.-.++|++... ..++.+++ +...+..+.+ .....+|||||+ |++++++++.+
T Consensus 416 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~ 495 (578)
T 4a82_A 416 QIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN 495 (578)
T ss_dssp TEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHC
T ss_pred heEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcC
Confidence 23578877521 11333433 2333333333 344578999999 89999999999
Q ss_pred CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 349 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 349 ~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
|+++||||||+++|+.....+.. ++..+. .+.|+|++||+++....||+++.+.+|++...
T Consensus 496 p~illlDEpts~LD~~~~~~i~~-~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~ 556 (578)
T 4a82_A 496 PPILILDEATSALDLESESIIQE-ALDVLS-KDRTTLIVAHRLSTITHADKIVVIENGHIVET 556 (578)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHH-HHHHHT-TTSEEEEECSSGGGTTTCSEEEEEETTEEEEE
T ss_pred CCEEEEECccccCCHHHHHHHHH-HHHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999888887 445454 36899999999987778999999999998654
No 55
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.88 E-value=7.5e-23 Score=238.05 Aligned_cols=168 Identities=15% Similarity=0.153 Sum_probs=131.2
Q ss_pred CCeEEEcccccccCC--eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------------------hhh
Q 004463 241 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK 296 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~--~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------~aq 296 (752)
.+.++++||+++|++ .++ ++||++++| ++++|+||||||||||+|++ |++.+ +.+
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G-e~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~ 417 (587)
T 3qf4_A 339 EGSVSFENVEFRYFENTDPVLSGVNFSVKPG-SLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRG 417 (587)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTT-CEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHH
T ss_pred CCcEEEEEEEEEcCCCCCcceeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHh
Confidence 357999999999953 344 999999999 99999999999999999999 65532 122
Q ss_pred hceeecCCCCC-CchHHHHH---------------HHHcC-----------CchhhhcCcccchHHHH-HHHHHHHccCC
Q 004463 297 AGLYLPAKNHP-RLPWFDLI---------------LADIG-----------DHQSLEQNLSTFSGHIS-RIVDILELVSR 348 (752)
Q Consensus 297 ~G~~vP~~~~~-~l~~~d~i---------------~~~ig-----------~~~~i~~~~stlSgg~k-rl~~i~~la~~ 348 (752)
.-.++||+... ..++.+++ +...+ .+..+.+...+|||||+ |++++++++.+
T Consensus 418 ~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~ 497 (587)
T 3qf4_A 418 HISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKK 497 (587)
T ss_dssp HEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTC
T ss_pred heEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcC
Confidence 33578887521 11233332 22222 23334566789999999 89999999999
Q ss_pred CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 349 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 349 ~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
|+++||||||+++|+.....+...+.+ +. .+.|+|++||+++....||+++.+.+|++...
T Consensus 498 p~illlDEpts~LD~~~~~~i~~~l~~-~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~ 558 (587)
T 3qf4_A 498 PKVLILDDCTSSVDPITEKRILDGLKR-YT-KGCTTFIITQKIPTALLADKILVLHEGKVAGF 558 (587)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHH-HS-TTCEEEEEESCHHHHTTSSEEEEEETTEEEEE
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHH-hC-CCCEEEEEecChHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999985544 43 48899999999997789999999999988654
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.88 E-value=3.5e-22 Score=240.84 Aligned_cols=162 Identities=15% Similarity=0.191 Sum_probs=128.5
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH--Hhhhhh---hhh-ceeecCCC---CCCchH
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL--GLASLM---SKA-GLYLPAKN---HPRLPW 311 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i--Gli~~~---aq~-G~~vP~~~---~~~l~~ 311 (752)
.+...|+++.|+++.+ ++||++.+| ++++|+||||||||||||+| |.+.-. ... -.|+|+.. ...+++
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~G-e~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRA-RRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBH
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcH
Confidence 3555699999998776 999999999 99999999999999999999 332100 000 13555432 122222
Q ss_pred --------------HHHHHHHcCCc-hhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHH
Q 004463 312 --------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ 375 (752)
Q Consensus 312 --------------~d~i~~~ig~~-~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~ 375 (752)
+..++..+|+. +..++.+++|||||+ |++++++++.+|+||||||||+|||+.....|...+.+
T Consensus 514 ~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~ 593 (986)
T 2iw3_A 514 LDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT 593 (986)
T ss_dssp HHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh
Confidence 33456778884 678999999999999 89999999999999999999999999999998884443
Q ss_pred HHhcCCcEEEEEecchh-HHhhhcccccccCCcee
Q 004463 376 YLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE 409 (752)
Q Consensus 376 ~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g~v~ 409 (752)
.|.|+|++||+++ +..+|++++.+.+|++.
T Consensus 594 ----~g~tvIivSHdl~~l~~~adrii~L~~G~iv 624 (986)
T 2iw3_A 594 ----CGITSITISHDSVFLDNVCEYIINYEGLKLR 624 (986)
T ss_dssp ----SCSEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred ----CCCEEEEEECCHHHHHHhCCEEEEEECCeee
Confidence 4889999999988 55699999999999875
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.9e-22 Score=234.51 Aligned_cols=148 Identities=18% Similarity=0.149 Sum_probs=116.8
Q ss_pred ccccccCCee--EeeeEEEccCceEEEEEcCCCCCHHHHHHHH-HhhhhhhhhceeecCCCCC-----------------
Q 004463 248 SLSKGISDFP--VPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHP----------------- 307 (752)
Q Consensus 248 ~ls~~y~~~~--v~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~aq~G~~vP~~~~~----------------- 307 (752)
+++++|+... +.....+.+| ++++|+||||||||||||+| |++ .|..|..
T Consensus 82 ~~~~~Y~~~~~~l~~l~~~~~G-ei~~LvGpNGaGKSTLLkiL~Gll---------~P~~G~i~~~~~~~~~~~~~~g~~ 151 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLPTPRPG-QVLGLVGTNGIGKSTALKILAGKQ---------KPNLGRFDDPPEWQEIIKYFRGSE 151 (608)
T ss_dssp TEEEECSTTSCEEECCCCCCTT-SEEEEECCTTSSHHHHHHHHHTSS---------CCCTTTTCCSSCHHHHHHHTTTST
T ss_pred CeEEEECCCceeecCCCCCCCC-CEEEEECCCCChHHHHHHHHhcCC---------CCCCceEecccchhhhhheecChh
Confidence 5677776532 2222256788 99999999999999999999 443 2222211
Q ss_pred -----------------------Cc-----------------------hHHHHHHHHcCCchhhhcCcccchHHHH-HHH
Q 004463 308 -----------------------RL-----------------------PWFDLILADIGDHQSLEQNLSTFSGHIS-RIV 340 (752)
Q Consensus 308 -----------------------~l-----------------------~~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~ 340 (752)
.+ ..++.++..+|+.+..++.+++|||||+ |++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~ 231 (608)
T 3j16_B 152 LQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFA 231 (608)
T ss_dssp HHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHH
T ss_pred hhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHH
Confidence 00 1234567788898899999999999999 899
Q ss_pred HHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCC
Q 004463 341 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENA 406 (752)
Q Consensus 341 ~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g 406 (752)
++++++.+|++|||||||+|||+.+...+.. +++.+.+.|.|+|++||+++ +..+||++..+.++
T Consensus 232 iAraL~~~p~llllDEPts~LD~~~~~~l~~-~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~ 297 (608)
T 3j16_B 232 IGMSCVQEADVYMFDEPSSYLDVKQRLNAAQ-IIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGV 297 (608)
T ss_dssp HHHHHHSCCSEEEEECTTTTCCHHHHHHHHH-HHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHhCCCEEEEECcccCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999988 66677777899999999988 55689988877553
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.86 E-value=6.9e-22 Score=229.85 Aligned_cols=164 Identities=21% Similarity=0.233 Sum_probs=124.2
Q ss_pred cccccccCCee--E-eeeEEEccCc----eEEEEEcCCCCCHHHHHHHH-Hhhhhhh-----h-hceeecCCCCCC--ch
Q 004463 247 GSLSKGISDFP--V-PIDIKVECET----RVVVITGPNTGGKTASMKTL-GLASLMS-----K-AGLYLPAKNHPR--LP 310 (752)
Q Consensus 247 ~~ls~~y~~~~--v-~idl~l~~g~----~~~~I~GpNGsGKSTlLK~i-Gli~~~a-----q-~G~~vP~~~~~~--l~ 310 (752)
.++++.|++.. + +++|++.+|. ++++|+||||||||||||+| |++.+.. . .-.++|+..... .+
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~t 429 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGT 429 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSB
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCcc
Confidence 45677786532 2 7888888772 57999999999999999999 6655431 0 113555543211 12
Q ss_pred H-----------------HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHH
Q 004463 311 W-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATS 372 (752)
Q Consensus 311 ~-----------------~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~a 372 (752)
+ .+.++..+++.+..++.+++|||||+ |++++++++.+|++|||||||+|||+.....+...
T Consensus 430 v~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~l 509 (608)
T 3j16_B 430 VRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKV 509 (608)
T ss_dssp HHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 2 23345667777888999999999999 89999999999999999999999999999999985
Q ss_pred HHHHHhcCCcEEEEEecchhH-HhhhcccccccC--Cceee
Q 004463 373 ILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFEN--AATEF 410 (752)
Q Consensus 373 ll~~l~~~~~tviitTH~~~l-~~~a~~~~~i~~--g~v~~ 410 (752)
+.+...+.|.|+|++|||+++ ..+||+++.+.+ |.+..
T Consensus 510 l~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~ 550 (608)
T 3j16_B 510 IRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAH 550 (608)
T ss_dssp HHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEE
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEe
Confidence 555445668999999999884 568999988875 45443
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.85 E-value=2.1e-21 Score=223.20 Aligned_cols=148 Identities=18% Similarity=0.156 Sum_probs=112.2
Q ss_pred ccccccCCee-EeeeEEE-ccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCC------------------
Q 004463 248 SLSKGISDFP-VPIDIKV-ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP------------------ 307 (752)
Q Consensus 248 ~ls~~y~~~~-v~idl~l-~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~------------------ 307 (752)
+++..||.+. .-..+.+ .+| ++++|+||||||||||||+| +|++.|..|..
T Consensus 4 ~~~~~~~~~~f~l~~l~~~~~G-ei~gLiGpNGaGKSTLlkiL--------~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i 74 (538)
T 3ozx_A 4 EVIHRYKVNGFKLFGLPTPKNN-TILGVLGKNGVGKTTVLKIL--------AGEIIPNFGDPNSKVGKDEVLKRFRGKEI 74 (538)
T ss_dssp CEEEESSTTSCEEECCCCCCTT-EEEEEECCTTSSHHHHHHHH--------TTSSCCCTTCTTSCCCHHHHHHHHTTSTT
T ss_pred CCceecCCCceeecCCCCCCCC-CEEEEECCCCCcHHHHHHHH--------hcCCCCCCCccccccchhhHHhhcCCeeH
Confidence 3455665322 1223333 367 99999999999999999999 33333322211
Q ss_pred ----------------------C------ch------------HHHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHcc
Q 004463 308 ----------------------R------LP------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV 346 (752)
Q Consensus 308 ----------------------~------l~------------~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la 346 (752)
. .. ..+.++..+|+....++.+++|||||+ |++++++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~ 154 (538)
T 3ozx_A 75 YNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLL 154 (538)
T ss_dssp HHHHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhhccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 0 00 134567788888889999999999999 899999999
Q ss_pred CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh-HHhhhcccccccCC
Q 004463 347 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENA 406 (752)
Q Consensus 347 ~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~-l~~~a~~~~~i~~g 406 (752)
.+|++|||||||++||+.+...+.. +++.+.+ |.|+|++||+++ +..+|+++..+.++
T Consensus 155 ~~p~illlDEPts~LD~~~~~~l~~-~l~~l~~-g~tii~vsHdl~~~~~~~d~i~vl~~~ 213 (538)
T 3ozx_A 155 READVYIFDQPSSYLDVRERMNMAK-AIRELLK-NKYVIVVDHDLIVLDYLTDLIHIIYGE 213 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHH-HHHHHCT-TSEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred cCCCEEEEECCcccCCHHHHHHHHH-HHHHHhC-CCEEEEEEeChHHHHhhCCEEEEecCC
Confidence 9999999999999999999999988 6666766 899999999987 55688887766543
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.84 E-value=4.4e-21 Score=226.57 Aligned_cols=94 Identities=23% Similarity=0.229 Sum_probs=80.6
Q ss_pred HHHcCCchh-hhcCcccchHHHH-HHHHHHHccCCCc--EEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecch
Q 004463 316 LADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRES--LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 391 (752)
Q Consensus 316 ~~~ig~~~~-i~~~~stlSgg~k-rl~~i~~la~~~~--LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~ 391 (752)
+..+|+.+. .++.+++|||||+ |++++++++.+|+ ||||||||+||||.....+.. ++..+.+.|.|+|++|||+
T Consensus 186 l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~-~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 186 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIA-TLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp HHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHH-HHHHHHHTTCEEEEECCCH
T ss_pred HHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCH
Confidence 445565543 5789999999999 8999999999988 999999999999999999998 6666777799999999999
Q ss_pred hHHhhhcccccc------cCCceee
Q 004463 392 DLSCLKDKDTRF------ENAATEF 410 (752)
Q Consensus 392 ~l~~~a~~~~~i------~~g~v~~ 410 (752)
++...|++++.+ .+|.+.+
T Consensus 265 ~~~~~~d~ii~l~~g~~~~~G~i~~ 289 (670)
T 3ux8_A 265 DTMLAADYLIDIGPGAGIHGGEVVA 289 (670)
T ss_dssp HHHHHCSEEEEECSSSGGGCCSEEE
T ss_pred HHHhhCCEEEEecccccccCCEEEE
Confidence 977789999888 6777654
No 61
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.81 E-value=1.7e-20 Score=235.45 Aligned_cols=168 Identities=15% Similarity=0.147 Sum_probs=128.9
Q ss_pred CCeEEEcccccccCCe---eE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------------------hh
Q 004463 241 NSEMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MS 295 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~---~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------~a 295 (752)
.+.++++||+++|++. ++ ++||++.+| ++++|+||||||||||++++ |+..+ +.
T Consensus 1028 ~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~G-e~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 1106 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKG-QTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLR 1106 (1284)
T ss_dssp SCCEEEEEEEBCCSCGGGCCSBSSCCEEECSS-SEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHT
T ss_pred CCcEEEEEEEEECCCCCCCeeecceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHH
Confidence 3568999999999753 34 999999999 99999999999999999999 65532 11
Q ss_pred hhceeecCCCCC-CchHHHHH-----------------HHHcCCchhh-----------hcCcccchHHHH-HHHHHHHc
Q 004463 296 KAGLYLPAKNHP-RLPWFDLI-----------------LADIGDHQSL-----------EQNLSTFSGHIS-RIVDILEL 345 (752)
Q Consensus 296 q~G~~vP~~~~~-~l~~~d~i-----------------~~~ig~~~~i-----------~~~~stlSgg~k-rl~~i~~l 345 (752)
+.-.++|++... ..++.+++ +...+..+.+ ..+.++||||++ |+++++++
T Consensus 1107 ~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal 1186 (1284)
T 3g5u_A 1107 AQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARAL 1186 (1284)
T ss_dssp TSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHH
T ss_pred hceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHH
Confidence 223478887521 11222322 2333333322 234568999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 346 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 346 a~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
+.+|++|||||||+|+|+.....+..++ +.+ ..|+|+|++||+++....||+++.+.+|++...
T Consensus 1187 ~~~p~iLiLDEpTs~lD~~~~~~i~~~l-~~~-~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~ 1250 (1284)
T 3g5u_A 1187 VRQPHILLLDEATSALDTESEKVVQEAL-DKA-REGRTCIVIAHRLSTIQNADLIVVIQNGKVKEH 1250 (1284)
T ss_dssp HHCCSSEEEESCSSSCCHHHHHHHHHHH-HHH-SSSSCEEEECSCTTGGGSCSEEEEEETBEEEEE
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHH-HHh-CCCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 9999999999999999999988888855 444 348899999999987677999999999988654
No 62
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.81 E-value=3.2e-20 Score=232.88 Aligned_cols=167 Identities=15% Similarity=0.164 Sum_probs=127.1
Q ss_pred CCeEEEcccccccCCe---eE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------------------hh
Q 004463 241 NSEMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MS 295 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~---~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------~a 295 (752)
.+.++++||+|+|++. ++ ++||++++| ++++|+||||||||||++++ |+..+ +.
T Consensus 385 ~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G-~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r 463 (1284)
T 3g5u_A 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSG-QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLR 463 (1284)
T ss_dssp CCCEEEEEEEECCSSTTSCCSEEEEEEEECTT-CEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCeEEEEEEEEEcCCCCCCcceecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHH
Confidence 3568999999999742 34 999999999 99999999999999999999 55532 11
Q ss_pred hhceeecCCCCC-CchHHHHHH---------------HHcCCch-----------hhhcCcccchHHHH-HHHHHHHccC
Q 004463 296 KAGLYLPAKNHP-RLPWFDLIL---------------ADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVS 347 (752)
Q Consensus 296 q~G~~vP~~~~~-~l~~~d~i~---------------~~ig~~~-----------~i~~~~stlSgg~k-rl~~i~~la~ 347 (752)
+.-.++||+... .-++.+++. ...+..+ .+.....+|||||+ |++++++++.
T Consensus 464 ~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~ 543 (1284)
T 3g5u_A 464 EIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR 543 (1284)
T ss_dssp HHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHH
T ss_pred hheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhc
Confidence 223478887521 113333332 2222222 23345679999999 8999999999
Q ss_pred CCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 004463 348 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 348 ~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~ 410 (752)
+|++|||||||++||+.....+... ++.+. .|.|+|++||+++....||+++.+.+|++..
T Consensus 544 ~p~iliLDEpts~LD~~~~~~i~~~-l~~~~-~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~ 604 (1284)
T 3g5u_A 544 NPKILLLDEATSALDTESEAVVQAA-LDKAR-EGRTTIVIAHRLSTVRNADVIAGFDGGVIVE 604 (1284)
T ss_dssp CCSEEEEESTTCSSCHHHHHHHHHH-HHHHH-TTSEEEEECSCHHHHTTCSEEEECSSSCCCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHH-HHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 9999999999999999987777764 44444 4889999999998767799999999998864
No 63
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=99.80 E-value=3.3e-20 Score=175.16 Aligned_cols=76 Identities=22% Similarity=0.291 Sum_probs=71.5
Q ss_pred CCCceeeccccHHHHHHHHHHHHHcc--CCCCcEEEEecccch------HHHHHHHHHhhcCCCcccccCCCCCCC--ce
Q 004463 677 SKNSLDLRGMRVEEASHQLDIALACW--ESRSVLFVIHGMGTG------VVKERVLEILRNHPRVAKYEQESPMNY--GC 746 (752)
Q Consensus 677 ~~~~ldlrG~r~eeA~~~vd~~ld~~--~~~~~v~IiHG~GtG------~Lr~~v~~~L~~~p~V~~~~~~~~~~~--G~ 746 (752)
+..+|||||||+|||...|++||++| .|++.|+|||||||| +||++|++||++||+|.+|+.|++.+| ||
T Consensus 46 ~~~~LDLHG~~~~EA~~~L~~fL~~a~~~g~r~V~IIHGKG~gs~~~~~vLk~~V~~wL~~~~~V~~f~~a~~~~GG~Ga 125 (137)
T 3qd7_X 46 QQASLNLLRQPVEECRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGA 125 (137)
T ss_dssp GGGEEECTTCCHHHHHHHHHHHHHHHHHTTCSEEEEECCCCSSTTSHHHHHHHHHHHHHHTSTTEEEEEECCGGGTGGGE
T ss_pred CCeEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCchHHHHHHHHHHHhcCCceeEEeecCccCCCCEE
Confidence 34689999999999999999999997 899999999999999 999999999999999999999999975 69
Q ss_pred EEEEEC
Q 004463 747 TVAYIK 752 (752)
Q Consensus 747 tvv~~~ 752 (752)
|+|+|+
T Consensus 126 t~V~Lr 131 (137)
T 3qd7_X 126 CYVALR 131 (137)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 999985
No 64
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.80 E-value=1.8e-19 Score=212.82 Aligned_cols=95 Identities=25% Similarity=0.242 Sum_probs=80.3
Q ss_pred HHHcCCch-hhhcCcccchHHHH-HHHHHHHccCCC---cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 004463 316 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRE---SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 390 (752)
Q Consensus 316 ~~~ig~~~-~i~~~~stlSgg~k-rl~~i~~la~~~---~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~ 390 (752)
+..+|+.. ..++.+++|||||+ |++++++++.+| +||||||||+||||.....+.. ++..+.+.|.|||++|||
T Consensus 527 l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~-~l~~l~~~g~tvi~vtHd 605 (670)
T 3ux8_A 527 LYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLD-VLHRLVDNGDTVLVIEHN 605 (670)
T ss_dssp HHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECCC
T ss_pred HHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCC
Confidence 34455543 45788999999999 899999998876 5999999999999999999998 556677779999999999
Q ss_pred hhHHhhhcccccc------cCCceeec
Q 004463 391 ADLSCLKDKDTRF------ENAATEFS 411 (752)
Q Consensus 391 ~~l~~~a~~~~~i------~~g~v~~~ 411 (752)
+++..+||+++.+ .+|.+...
T Consensus 606 ~~~~~~~d~i~~l~~~~g~~~G~i~~~ 632 (670)
T 3ux8_A 606 LDVIKTADYIIDLGPEGGDRGGQIVAV 632 (670)
T ss_dssp HHHHTTCSEEEEEESSSGGGCCEEEEE
T ss_pred HHHHHhCCEEEEecCCcCCCCCEEEEe
Confidence 9987889999988 78887665
No 65
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.79 E-value=1.6e-19 Score=227.19 Aligned_cols=167 Identities=15% Similarity=0.161 Sum_probs=128.0
Q ss_pred CCeEEEcccccccCC---eeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------------------hh
Q 004463 241 NSEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MS 295 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~---~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------~a 295 (752)
.+.++++||+|+|++ .++ ++||++++| +.++|+||+|||||||++++ |+..+ +.
T Consensus 413 ~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G-~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr 491 (1321)
T 4f4c_A 413 KGDITVENVHFTYPSRPDVPILRGMNLRVNAG-QTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLR 491 (1321)
T ss_dssp CCCEEEEEEEECCSSSTTSCSEEEEEEEECTT-CEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHH
T ss_pred CCcEEEEEeeeeCCCCCCCceeeceEEeecCC-cEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHh
Confidence 356899999999964 344 999999999 99999999999999999999 44432 11
Q ss_pred hhceeecCCCCC-CchHHHHH---------------HHHcCCchh-----------hhcCcccchHHHH-HHHHHHHccC
Q 004463 296 KAGLYLPAKNHP-RLPWFDLI---------------LADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVS 347 (752)
Q Consensus 296 q~G~~vP~~~~~-~l~~~d~i---------------~~~ig~~~~-----------i~~~~stlSgg~k-rl~~i~~la~ 347 (752)
+.-.||||+... .-++.++| +...++.+. +..+-.+|||||| |+++|+++..
T Consensus 492 ~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~ 571 (1321)
T 4f4c_A 492 KNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR 571 (1321)
T ss_dssp HHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT
T ss_pred hcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc
Confidence 233477877521 11222332 333333333 3345578999999 9999999999
Q ss_pred CCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceee
Q 004463 348 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 410 (752)
Q Consensus 348 ~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~ 410 (752)
+|+++||||||+++|+.....+..++.+ +.+ |.|+|++||.......||+++.+++|++..
T Consensus 572 ~~~IliLDE~tSaLD~~te~~i~~~l~~-~~~-~~T~iiiaHrls~i~~aD~Iivl~~G~ive 632 (1321)
T 4f4c_A 572 NPKILLLDEATSALDAESEGIVQQALDK-AAK-GRTTIIIAHRLSTIRNADLIISCKNGQVVE 632 (1321)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHHHHH-HHT-TSEEEEECSCTTTTTTCSEEEEEETTEEEE
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHH-HhC-CCEEEEEcccHHHHHhCCEEEEeeCCeeec
Confidence 9999999999999999987777775544 443 789999999999888999999999998854
No 66
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.78 E-value=2.2e-19 Score=225.91 Aligned_cols=168 Identities=14% Similarity=0.119 Sum_probs=127.2
Q ss_pred CCeEEEcccccccCCe---eE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------------------hh
Q 004463 241 NSEMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MS 295 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~---~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------------------~a 295 (752)
.+.++++||+++|++. +| ++||++++| +.++|+||+|||||||++++ |+..+ +.
T Consensus 1074 ~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~G-e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR 1152 (1321)
T 4f4c_A 1074 YGKVIFKNVRFAYPERPEIEILKGLSFSVEPG-QTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTR 1152 (1321)
T ss_dssp CCCEEEEEEEECCTTSCSSCSEEEEEEEECTT-CEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHH
T ss_pred CCeEEEEEEEEeCCCCCCCccccceeEEECCC-CEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHH
Confidence 4579999999999643 34 999999999 99999999999999999999 44422 12
Q ss_pred hhceeecCCCCC-CchHHH-----------------HHHHHcCCchhh-----------hcCcccchHHHH-HHHHHHHc
Q 004463 296 KAGLYLPAKNHP-RLPWFD-----------------LILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILEL 345 (752)
Q Consensus 296 q~G~~vP~~~~~-~l~~~d-----------------~i~~~ig~~~~i-----------~~~~stlSgg~k-rl~~i~~l 345 (752)
+.-.+|||++.. .-++-+ +.+...++.+.+ ..+-+.|||||+ |+++|+++
T Consensus 1153 ~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAl 1232 (1321)
T 4f4c_A 1153 SQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARAL 1232 (1321)
T ss_dssp TTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHH
T ss_pred hheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHH
Confidence 233477887521 011222 223334443332 334468999999 89999999
Q ss_pred cCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCCceeec
Q 004463 346 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 346 a~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
+.+|++|||||||+++|+.+-..+..++.+ +. .++|+|++||.+.....||+++++++|++.-.
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~-~~-~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~ 1296 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDR-AR-EGRTCIVIAHRLNTVMNADCIAVVSNGTIIEK 1296 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTT-TS-SSSEEEEECSSSSTTTTCSEEEEESSSSEEEE
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHH-Hc-CCCEEEEeccCHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999987777664433 22 37899999999998788999999999998643
No 67
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.77 E-value=1.4e-18 Score=208.28 Aligned_cols=97 Identities=25% Similarity=0.227 Sum_probs=82.9
Q ss_pred HHHHHcCCch-hhhcCcccchHHHH-HHHHHHHccCC---CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEe
Q 004463 314 LILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR---ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTT 388 (752)
Q Consensus 314 ~i~~~ig~~~-~i~~~~stlSgg~k-rl~~i~~la~~---~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitT 388 (752)
.++..+|+.. .+++.+.+|||||+ |++++++++.+ |+|+||||||+|||+.....|.. ++..+.+.|.|||++|
T Consensus 827 ~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~-lL~~L~~~G~TVIvis 905 (972)
T 2r6f_A 827 ETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLD-VLHRLVDNGDTVLVIE 905 (972)
T ss_dssp HHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEC
T ss_pred HHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEc
Confidence 4566778776 67899999999999 89999999976 59999999999999999999998 5566777899999999
Q ss_pred cchhHHhhhcccccc------cCCceeec
Q 004463 389 HYADLSCLKDKDTRF------ENAATEFS 411 (752)
Q Consensus 389 H~~~l~~~a~~~~~i------~~g~v~~~ 411 (752)
|++++..+||+++.+ .+|.+.+.
T Consensus 906 Hdl~~i~~aDrIivL~p~gG~~~G~Iv~~ 934 (972)
T 2r6f_A 906 HNLDVIKTADYIIDLGPEGGDRGGQIVAV 934 (972)
T ss_dssp CCHHHHTTCSEEEEECSSSTTSCCSEEEE
T ss_pred CCHHHHHhCCEEEEEcCCCCCCCCEEEEe
Confidence 999977789999988 56776553
No 68
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.77 E-value=2.2e-19 Score=176.08 Aligned_cols=135 Identities=12% Similarity=0.047 Sum_probs=90.4
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH--Hhhhhh--hhhceeecCCCCCCchH--HHHH------HHHcCCchhhh
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL--GLASLM--SKAGLYLPAKNHPRLPW--FDLI------LADIGDHQSLE 326 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i--Gli~~~--aq~G~~vP~~~~~~l~~--~d~i------~~~ig~~~~i~ 326 (752)
++||++++| ++++|+||||||||||+|++ |...+- .-.|...|..+...+.. ++.+ ....|.... .
T Consensus 1 ~vsl~i~~g-ei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~ 78 (171)
T 4gp7_A 1 SMKLTIPEL-SLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTV-V 78 (171)
T ss_dssp CEEEEEESS-EEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEE-E
T ss_pred CccccCCCC-EEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEE-E
Confidence 478999999 99999999999999999964 111100 01343333333222211 1211 122333222 2
Q ss_pred cCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChH----------------hHHHHHHHHHHHHhcCCcEEEEEec
Q 004463 327 QNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS----------------EGVALATSILQYLRDRVGLAVVTTH 389 (752)
Q Consensus 327 ~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~----------------~~~~L~~all~~l~~~~~tviitTH 389 (752)
......|+|++ |++++++++.+|.+|+|||||+++|+. ....+.. ++..+.+.|.|+|++||
T Consensus 79 ~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~-~l~~l~~~g~tvi~vtH 157 (171)
T 4gp7_A 79 DATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKK-SIKGLQREGFRYVYILN 157 (171)
T ss_dssp ESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHH-HSTTHHHHTCSEEEEEC
T ss_pred ECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhh-hhhhHHhcCCcEEEEeC
Confidence 23345588888 799999999999999999999999999 4466666 44445555899999999
Q ss_pred chhHHhh
Q 004463 390 YADLSCL 396 (752)
Q Consensus 390 ~~~l~~~ 396 (752)
+++....
T Consensus 158 ~~~~~~~ 164 (171)
T 4gp7_A 158 SPEEVEE 164 (171)
T ss_dssp SHHHHHH
T ss_pred CHHHhhh
Confidence 9886543
No 69
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.77 E-value=2.2e-18 Score=206.01 Aligned_cols=97 Identities=21% Similarity=0.185 Sum_probs=82.9
Q ss_pred HHHHHcCCch-hhhcCcccchHHHH-HHHHHHHccCC---CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEe
Q 004463 314 LILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR---ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTT 388 (752)
Q Consensus 314 ~i~~~ig~~~-~i~~~~stlSgg~k-rl~~i~~la~~---~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitT 388 (752)
+++..+|+.. .+.+.+++|||||+ |++++++++.+ |+|+||||||+|||+.....|.. ++..+.+.|.|||++|
T Consensus 712 ~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~-lL~~L~~~G~tVIvis 790 (842)
T 2vf7_A 712 DTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQR-QLVKLVDAGNTVIAVE 790 (842)
T ss_dssp HHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEC
T ss_pred HHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEc
Confidence 3456667765 46899999999999 89999999986 79999999999999999999998 6666777899999999
Q ss_pred cchhHHhhhcccccc------cCCceeec
Q 004463 389 HYADLSCLKDKDTRF------ENAATEFS 411 (752)
Q Consensus 389 H~~~l~~~a~~~~~i------~~g~v~~~ 411 (752)
|++++...||+++.+ .+|.+.+.
T Consensus 791 Hdl~~i~~aDrii~L~p~~g~~~G~Iv~~ 819 (842)
T 2vf7_A 791 HKMQVVAASDWVLDIGPGAGEDGGRLVAQ 819 (842)
T ss_dssp CCHHHHTTCSEEEEECSSSGGGCCSEEEE
T ss_pred CCHHHHHhCCEEEEECCCCCCCCCEEEEE
Confidence 999966889999998 57777654
No 70
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.76 E-value=2.5e-18 Score=206.71 Aligned_cols=97 Identities=23% Similarity=0.214 Sum_probs=82.8
Q ss_pred HHHHHcCCch-hhhcCcccchHHHH-HHHHHHHccCC---CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEe
Q 004463 314 LILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR---ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTT 388 (752)
Q Consensus 314 ~i~~~ig~~~-~i~~~~stlSgg~k-rl~~i~~la~~---~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitT 388 (752)
.++..+|+.. .+.+.+++|||||+ |++++++++.+ |+|+||||||+|||+.....|.. ++..+.+.|.|||++|
T Consensus 845 ~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~-lL~~L~~~G~TVIvis 923 (993)
T 2ygr_A 845 RTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLN-VINGLVDKGNTVIVIE 923 (993)
T ss_dssp HHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEC
T ss_pred HHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEc
Confidence 3566677776 67899999999999 89999999975 59999999999999999999998 5566777799999999
Q ss_pred cchhHHhhhcccccc------cCCceeec
Q 004463 389 HYADLSCLKDKDTRF------ENAATEFS 411 (752)
Q Consensus 389 H~~~l~~~a~~~~~i------~~g~v~~~ 411 (752)
|++++...||+++.+ .+|.+.+.
T Consensus 924 Hdl~~i~~aDrIivL~p~gg~~~G~Iv~~ 952 (993)
T 2ygr_A 924 HNLDVIKTSDWIIDLGPEGGAGGGTVVAQ 952 (993)
T ss_dssp CCHHHHTTCSEEEEEESSSTTSCSEEEEE
T ss_pred CCHHHHHhCCEEEEECCCcCCCCCEEEEe
Confidence 999977789999988 56777653
No 71
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.75 E-value=2.6e-18 Score=206.91 Aligned_cols=96 Identities=28% Similarity=0.287 Sum_probs=81.1
Q ss_pred HHHHcCCch-hhhcCcccchHHHH-HHHHHHHccCCC---cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEec
Q 004463 315 ILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRE---SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTH 389 (752)
Q Consensus 315 i~~~ig~~~-~i~~~~stlSgg~k-rl~~i~~la~~~---~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH 389 (752)
++..+|+.. .+.+++++|||||+ |++++++++.+| +|+||||||+|||+.+...|.. ++..+.+.|.|||++||
T Consensus 788 ~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~-lL~~L~~~G~TVIvI~H 866 (916)
T 3pih_A 788 VLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVE-VLHRLVDRGNTVIVIEH 866 (916)
T ss_dssp HHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECC
T ss_pred HHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEeC
Confidence 455666654 35788999999999 899999998754 7999999999999999999998 56667778999999999
Q ss_pred chhHHhhhcccccc------cCCceeec
Q 004463 390 YADLSCLKDKDTRF------ENAATEFS 411 (752)
Q Consensus 390 ~~~l~~~a~~~~~i------~~g~v~~~ 411 (752)
++++...||+++.+ .+|.+.+.
T Consensus 867 dL~~i~~ADrIivLgp~gg~~~G~Iv~~ 894 (916)
T 3pih_A 867 NLDVIKNADHIIDLGPEGGKEGGYIVAT 894 (916)
T ss_dssp CHHHHTTCSEEEEEESSSGGGCCEEEEE
T ss_pred CHHHHHhCCEEEEecCCCCCCCCEEEEE
Confidence 99977789999988 67777664
No 72
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.74 E-value=6.4e-18 Score=185.56 Aligned_cols=83 Identities=24% Similarity=0.203 Sum_probs=74.0
Q ss_pred hcCcccchHHHH-HHHHHHHcc------CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhc
Q 004463 326 EQNLSTFSGHIS-RIVDILELV------SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKD 398 (752)
Q Consensus 326 ~~~~stlSgg~k-rl~~i~~la------~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~ 398 (752)
++++++|||||+ |++++++++ .+|+++||||||+||||.....+.. ++..+.+.|.|||++||++++...|+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~-~l~~l~~~g~tvi~itH~~~~~~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIAS-VLKELERLNKVIVFITHDREFSEAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHH-HHHGGGGSSSEEEEEESCHHHHTTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhCCCEEEEEecchHHHHhCC
Confidence 467889999999 788888887 7999999999999999999999988 66667777999999999999888899
Q ss_pred ccccccCCcee
Q 004463 399 KDTRFENAATE 409 (752)
Q Consensus 399 ~~~~i~~g~v~ 409 (752)
+++.+.+|.+.
T Consensus 353 ~~~~l~~G~i~ 363 (365)
T 3qf7_A 353 RKLRITGGVVV 363 (365)
T ss_dssp CEEEEETTEEC
T ss_pred EEEEEECCEEE
Confidence 99999998764
No 73
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.73 E-value=7.5e-18 Score=187.08 Aligned_cols=78 Identities=23% Similarity=0.276 Sum_probs=68.4
Q ss_pred chHHHH-HHHHHHHccCCC--cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccc----c
Q 004463 332 FSGHIS-RIVDILELVSRE--SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF----E 404 (752)
Q Consensus 332 lSgg~k-rl~~i~~la~~~--~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i----~ 404 (752)
|||||+ |+.++++++.+| ++|||||||+|||+.....|.. ++..+. .+++||++||++++..+|++++.+ .
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~-~L~~l~-~~~~vi~itH~~~~~~~~d~i~~l~k~~~ 373 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAE-QLSRLA-DTRQVLVVTHLAQIAARAHHHYKVEKQVE 373 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHH-HHHHHT-TTSEEEEECSCHHHHTTCSEEEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHh-CCCEEEEEeCcHHHHhhcCeEEEEEEecc
Confidence 599999 899999999999 9999999999999999999998 445555 489999999999988899999998 7
Q ss_pred CCceeec
Q 004463 405 NAATEFS 411 (752)
Q Consensus 405 ~g~v~~~ 411 (752)
+|++...
T Consensus 374 ~G~~~~~ 380 (415)
T 4aby_A 374 DGRTVSH 380 (415)
T ss_dssp TTEEEEE
T ss_pred CCceEEE
Confidence 7776543
No 74
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.4e-19 Score=202.29 Aligned_cols=157 Identities=14% Similarity=0.015 Sum_probs=111.1
Q ss_pred CCeEEEcccccccCCeeEeeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhhh-h-----------ceeecCCCC-
Q 004463 241 NSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK-A-----------GLYLPAKNH- 306 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~aq-~-----------G~~vP~~~~- 306 (752)
..|++++||++.|+ +++|++.+| ++++|+||||||||||||+| |++..... . ..++|+...
T Consensus 116 ~~mi~~~nl~~~y~----~vsl~i~~G-e~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l 190 (460)
T 2npi_A 116 HTMKYIYNLHFMLE----KIRMSNFEG-PRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISA 190 (460)
T ss_dssp CTHHHHHHHHHHHH----HHHHHSSSC-CCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEE
T ss_pred cchhhhhhhhehhh----cCceEeCCC-CEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhh
Confidence 35788999999997 578888999 99999999999999999999 77654321 1 124454420
Q ss_pred ----CCchHHHHH------------------HHHcCCchhhhcCcccchHHHH-HHHHHHH--ccCCCcE----EEEeC-
Q 004463 307 ----PRLPWFDLI------------------LADIGDHQSLEQNLSTFSGHIS-RIVDILE--LVSRESL----VLIDE- 356 (752)
Q Consensus 307 ----~~l~~~d~i------------------~~~ig~~~~i~~~~stlSgg~k-rl~~i~~--la~~~~L----lLLDE- 356 (752)
..+++.+++ +..+|+.+..+ ..+|||||+ |++++++ ++.+|++ |||||
T Consensus 191 ~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEp 268 (460)
T 2npi_A 191 TPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTP 268 (460)
T ss_dssp EECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECC
T ss_pred cccccccchhhhhcccccccCcchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCC
Confidence 011222222 12223333333 789999999 8999999 9999999 99999
Q ss_pred CCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh--HH-----hhhcc-----ccccc-CCcee
Q 004463 357 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD--LS-----CLKDK-----DTRFE-NAATE 409 (752)
Q Consensus 357 p~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~--l~-----~~a~~-----~~~i~-~g~v~ 409 (752)
||+++|+. ...|.. .+.+.+.++|++||+++ +. .+|++ ++.+. +|.+.
T Consensus 269 Pts~LD~~-~~~l~~----l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv 329 (460)
T 2npi_A 269 SISQLDEN-LAELHH----IIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS 329 (460)
T ss_dssp CGGGSCSS-CHHHHH----HHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC
T ss_pred cccccChh-HHHHHH----HHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE
Confidence 99999998 333333 33334788999999977 43 58888 66676 66554
No 75
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.65 E-value=4.5e-16 Score=167.79 Aligned_cols=83 Identities=19% Similarity=0.163 Sum_probs=67.1
Q ss_pred hcCcccchHHHH-HHHHHHHcc----CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccc
Q 004463 326 EQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKD 400 (752)
Q Consensus 326 ~~~~stlSgg~k-rl~~i~~la----~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~ 400 (752)
+..+++||+|++ +++++++++ .+|++|||||||++|||.....+.. ++..+. .+.++|++||+.++..+|++.
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~-~l~~~~-~~~~vi~~tH~~~~~~~~d~~ 291 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKR-LLKENS-KHTQFIVITHNKIVMEAADLL 291 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHH-HHHHHT-TTSEEEEECCCTTGGGGCSEE
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhc-CCCeEEEEECCHHHHhhCceE
Confidence 456789999999 788888775 6889999999999999999999988 555554 478999999998877888875
Q ss_pred --ccccCCceee
Q 004463 401 --TRFENAATEF 410 (752)
Q Consensus 401 --~~i~~g~v~~ 410 (752)
+.+.+|.-.+
T Consensus 292 ~~v~~~~g~s~~ 303 (322)
T 1e69_A 292 HGVTMVNGVSAI 303 (322)
T ss_dssp EEEEESSSCEEE
T ss_pred EEEEEeCCEEEE
Confidence 5566665433
No 76
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.63 E-value=6.3e-17 Score=160.09 Aligned_cols=125 Identities=14% Similarity=0.046 Sum_probs=81.2
Q ss_pred EEEEEcCCCCCHHHHHHHH-HhhhhhhhhceeecCC----CCCCchH-------HHHHHHHcCCc--hhhhcCcccchHH
Q 004463 270 VVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAK----NHPRLPW-------FDLILADIGDH--QSLEQNLSTFSGH 335 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i-Gli~~~aq~G~~vP~~----~~~~l~~-------~d~i~~~ig~~--~~i~~~~stlSgg 335 (752)
.++|+||||||||||||++ |++.+. -.|...... ....+++ .++++..++.. ....+.+.+||||
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~-~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG 80 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR-AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYF 80 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG-EEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-CCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHH
Confidence 5899999999999999999 666421 122111000 0000110 01111111111 2456778899999
Q ss_pred HH-HHHHHHH-----ccCCCcEEEEeC--CCCCCChHhHHHHHHHHHHHHhcCCcEEEEEec---chh-HHhhhcc
Q 004463 336 IS-RIVDILE-----LVSRESLVLIDE--IGSGTDPSEGVALATSILQYLRDRVGLAVVTTH---YAD-LSCLKDK 399 (752)
Q Consensus 336 ~k-rl~~i~~-----la~~~~LlLLDE--p~~glD~~~~~~L~~all~~l~~~~~tviitTH---~~~-l~~~a~~ 399 (752)
|+ |+.++++ ++.+|+++|||| ||+++|+.....+... +.+.+.++|++|| +.+ +..+|++
T Consensus 81 ~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~----l~~~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 81 EELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQI----MHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHH----HTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred HHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHH----HhcCCCeEEEEEccCCCchHHHHHHhc
Confidence 98 7888886 899999999999 9999999887776663 3345677888886 555 4446665
No 77
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.62 E-value=2.6e-15 Score=163.08 Aligned_cols=78 Identities=23% Similarity=0.261 Sum_probs=65.0
Q ss_pred hcCcccchHHHHH-------HHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhc
Q 004463 326 EQNLSTFSGHISR-------IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKD 398 (752)
Q Consensus 326 ~~~~stlSgg~kr-------l~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~ 398 (752)
++.+++|||||++ ++++++++.+|++|||||||+||||.....+.. ++..+...+.++|++||+.++..+|+
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~-~l~~~~~~~~~vi~~sH~~~~~~~~d 321 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-IMERYLKKIPQVILVSHDEELKDAAD 321 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHH-HHHHTGGGSSEEEEEESCGGGGGGCS
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEEChHHHHHhCC
Confidence 4678899999984 455567888999999999999999999999988 55555666789999999988888888
Q ss_pred cccccc
Q 004463 399 KDTRFE 404 (752)
Q Consensus 399 ~~~~i~ 404 (752)
+++.+.
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 877653
No 78
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.61 E-value=2.1e-17 Score=167.66 Aligned_cols=121 Identities=15% Similarity=0.152 Sum_probs=72.2
Q ss_pred ccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh----------------hhceeecCCCCCCc-hHHHHHHHHcC---Cch
Q 004463 265 ECETRVVVITGPNTGGKTASMKTL-GLASLMS----------------KAGLYLPAKNHPRL-PWFDLILADIG---DHQ 323 (752)
Q Consensus 265 ~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a----------------q~G~~vP~~~~~~l-~~~d~i~~~ig---~~~ 323 (752)
.+| ++++|+||||||||||||++ |+ .+.. +...|+|+.....+ .++..++..+. ...
T Consensus 20 ~~G-e~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~~~~~ 97 (208)
T 3b85_A 20 DTN-TIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMVEPE 97 (208)
T ss_dssp HHC-SEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHHHHTTTSCTT
T ss_pred cCC-CEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHHHHhccHH
Confidence 788 89999999999999999999 67 5421 01123444321111 11111111111 111
Q ss_pred hhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHh
Q 004463 324 SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC 395 (752)
Q Consensus 324 ~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~ 395 (752)
.+..-+.. ..||+ |++++++++.+|++|||||||+| ....+.. ++..+ +.|.|+| +|||.+...
T Consensus 98 ~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~-~l~~l-~~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 98 VIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKM-FLTRL-GFGSKMV-VTGDITQVD 162 (208)
T ss_dssp HHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHH-HHTTB-CTTCEEE-EEEC-----
T ss_pred HHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHH-HHHHh-cCCCEEE-EECCHHHHh
Confidence 11111111 22777 89999999999999999999999 5666666 44444 5578888 999987544
No 79
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=99.60 E-value=1.1e-15 Score=136.19 Aligned_cols=71 Identities=31% Similarity=0.469 Sum_probs=62.7
Q ss_pred CCCceeeccccHHHHHHHHHHHHHcc-------CCCCcEEEEecccc------hHHHHHHHHHhhcCCCcccccCCCCCC
Q 004463 677 SKNSLDLRGMRVEEASHQLDIALACW-------ESRSVLFVIHGMGT------GVVKERVLEILRNHPRVAKYEQESPMN 743 (752)
Q Consensus 677 ~~~~ldlrG~r~eeA~~~vd~~ld~~-------~~~~~v~IiHG~Gt------G~Lr~~v~~~L~~~p~V~~~~~~~~~~ 743 (752)
+..+|||+||+++||+..|++||+++ .|...|+||||+|+ |+||.+|++||+++|+ .|..+ +
T Consensus 7 ~~~~lDLHGl~v~eA~~~L~~~L~~~~~~~~~~~g~~~v~IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~--~~~eg---g 81 (96)
T 2d9i_A 7 GQNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSF--RFSEI---K 81 (96)
T ss_dssp SCCEEECTTSCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECCCSGGGTTCTTCHHHHHHHHHHHTTC--CEECC---S
T ss_pred CCCeEECCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEECcCCCCCCCcchHHHHHHHHHhhCCC--ccccC---C
Confidence 34689999999999999999999985 68889999999999 9999999999999999 46422 4
Q ss_pred CceEEEEEC
Q 004463 744 YGCTVAYIK 752 (752)
Q Consensus 744 ~G~tvv~~~ 752 (752)
.|+|+|+|+
T Consensus 82 ~Ga~~V~L~ 90 (96)
T 2d9i_A 82 PGCLKVMLK 90 (96)
T ss_dssp TTCEEEECC
T ss_pred CcEEEEEEc
Confidence 699999985
No 80
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.50 E-value=5.4e-16 Score=172.32 Aligned_cols=139 Identities=14% Similarity=0.118 Sum_probs=99.1
Q ss_pred eeeEEEccCce--------------------EEEEEcCCCCCHHHHHHHH-Hhhhhhh-----------hhceeecCCCC
Q 004463 259 PIDIKVECETR--------------------VVVITGPNTGGKTASMKTL-GLASLMS-----------KAGLYLPAKNH 306 (752)
Q Consensus 259 ~idl~l~~g~~--------------------~~~I~GpNGsGKSTlLK~i-Gli~~~a-----------q~G~~vP~~~~ 306 (752)
++++++.+| + +++|+||||+|||||||++ |++.+-. +. .++|+...
T Consensus 41 ~is~~i~~G-e~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~-~~v~q~~~ 118 (413)
T 1tq4_A 41 LIELRMRAG-NIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME-RHPYKHPN 118 (413)
T ss_dssp HHHHHHHHT-CHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC-CEEEECSS
T ss_pred hccceecCC-CCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee-EEeccccc
Confidence 889999999 8 9999999999999999999 6543210 11 13333321
Q ss_pred -CCch------------HHHHHHHHcCCchhhhcCcccchHH--HH-HHHHHHHccC----------CCcEEEEeCCCCC
Q 004463 307 -PRLP------------WFDLILADIGDHQSLEQNLSTFSGH--IS-RIVDILELVS----------RESLVLIDEIGSG 360 (752)
Q Consensus 307 -~~l~------------~~d~i~~~ig~~~~i~~~~stlSgg--~k-rl~~i~~la~----------~~~LlLLDEp~~g 360 (752)
..+. .++.++..+++.+. ...+. +|+| |+ |+.++++++. +|++++|||||+|
T Consensus 119 ~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsg 196 (413)
T 1tq4_A 119 IPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGE 196 (413)
T ss_dssp CTTEEEEECCCGGGSSCCHHHHHHHTTGGGC-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTC
T ss_pred cCCeeehHhhcccchHHHHHHHHHHcCCCcc-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCccccc
Confidence 0111 14667777776543 23333 9998 87 7888888877 9999999999999
Q ss_pred CChHhHHHHHHHHHHHH----hcC----CcEEEEEecchh---HHhhhcccc
Q 004463 361 TDPSEGVALATSILQYL----RDR----VGLAVVTTHYAD---LSCLKDKDT 401 (752)
Q Consensus 361 lD~~~~~~L~~all~~l----~~~----~~tviitTH~~~---l~~~a~~~~ 401 (752)
+||.....+...+.+.. .+. ..+++++||+.. +..+|+.+.
T Consensus 197 LD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 197 PQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99999999888555543 232 256889999854 666777664
No 81
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=99.50 E-value=1.9e-14 Score=135.92 Aligned_cols=70 Identities=31% Similarity=0.474 Sum_probs=62.7
Q ss_pred CCceeeccccHHHHHHHHHHHHHcc-------CCCCcEEEEecccc------hHHHHHHHHHhhcCCCcccccCCCCCCC
Q 004463 678 KNSLDLRGMRVEEASHQLDIALACW-------ESRSVLFVIHGMGT------GVVKERVLEILRNHPRVAKYEQESPMNY 744 (752)
Q Consensus 678 ~~~ldlrG~r~eeA~~~vd~~ld~~-------~~~~~v~IiHG~Gt------G~Lr~~v~~~L~~~p~V~~~~~~~~~~~ 744 (752)
..+|||+||+++||+..|++||+++ .|.+.|+||||+|+ |+||.+|++||+++|+ .|..+ +.
T Consensus 53 ~~~LDLHGl~v~EA~~~L~~fL~~a~~~~~~~~g~~~v~IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~--~~~e~---g~ 127 (135)
T 2vkc_A 53 QNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSF--RFSEI---KP 127 (135)
T ss_dssp GTEEECTTCCHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEECCSCSSSCCSCCTHHHHHHHHHHTTTC--EEEEC---ST
T ss_pred CceEEeCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEECCCcCCCCCCchHHHHHHHHHhcCCC--ceeeC---CC
Confidence 4689999999999999999999985 68899999999999 9999999999999996 56433 47
Q ss_pred ceEEEEEC
Q 004463 745 GCTVAYIK 752 (752)
Q Consensus 745 G~tvv~~~ 752 (752)
|+|+|.||
T Consensus 128 G~~~V~Lk 135 (135)
T 2vkc_A 128 GCLKVMLK 135 (135)
T ss_dssp TEEEEECC
T ss_pred CeEEEEeC
Confidence 99999986
No 82
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.47 E-value=5e-14 Score=161.71 Aligned_cols=159 Identities=11% Similarity=0.013 Sum_probs=111.8
Q ss_pred EEEcccccccCCeeEeeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhhhhcee-ecCCCCCCchHHHHH------
Q 004463 244 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLY-LPAKNHPRLPWFDLI------ 315 (752)
Q Consensus 244 l~~~~ls~~y~~~~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~aq~G~~-vP~~~~~~l~~~d~i------ 315 (752)
+.+++++.+|++.---++..+.+| ++++|+||||+|||||++++ |+........++ .+++. ...++.++
T Consensus 258 ~~~~~l~~g~~~ld~vL~g~i~~G-~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~--~~~l~~~~~~~g~~ 334 (525)
T 1tf7_A 258 SSNVRVSSGVVRLDEMCGGGFFKD-SIILATGATGTGKTLLVSRFVENACANKERAILFAYEES--RAQLLRNAYSWGMD 334 (525)
T ss_dssp CCCCEECCSCHHHHHHTTSSEESS-CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC--HHHHHHHHHTTSCC
T ss_pred cccceeecChHHHHHHhCCCCCCC-cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC--HHHHHHHHHHcCCC
Confidence 455667666643100123367899 99999999999999999999 555443221123 34332 11222221
Q ss_pred ---HHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChH-----hHHHHHHHHHHHHhcCCcEEEE
Q 004463 316 ---LADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS-----EGVALATSILQYLRDRVGLAVV 386 (752)
Q Consensus 316 ---~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~-----~~~~L~~all~~l~~~~~tvii 386 (752)
+...|.....+..+..||+|++ ++.++++++.+|++|||| |++|+|+. .+..+.. ++..+++.|.|+|+
T Consensus 335 ~~~~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~-ll~~l~~~g~tvil 412 (525)
T 1tf7_A 335 FEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIG-VTGYAKQEEITGLF 412 (525)
T ss_dssp HHHHHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHH-HHHHHHHTTCEEEE
T ss_pred HHHHHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHH-HHHHHHhCCCEEEE
Confidence 1123344445667788999999 788889999999999999 99999998 7777776 77888888999999
Q ss_pred Eecch----------h-HHhhhcccccccCCc
Q 004463 387 TTHYA----------D-LSCLKDKDTRFENAA 407 (752)
Q Consensus 387 tTH~~----------~-l~~~a~~~~~i~~g~ 407 (752)
+||+. . +..+||.++.+.++.
T Consensus 413 vsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 413 TNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred EECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99997 4 456888888766553
No 83
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.45 E-value=1.1e-13 Score=141.69 Aligned_cols=138 Identities=15% Similarity=0.062 Sum_probs=77.2
Q ss_pred EEccCceEEEEEcCCCCCHHHHHHHHHh-hh-hhhhhceeecCCCCCCchHHHHHHHHcCCc-hh---------------
Q 004463 263 KVECETRVVVITGPNTGGKTASMKTLGL-AS-LMSKAGLYLPAKNHPRLPWFDLILADIGDH-QS--------------- 324 (752)
Q Consensus 263 ~l~~g~~~~~I~GpNGsGKSTlLK~iGl-i~-~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~-~~--------------- 324 (752)
.+++| ++++|+||||||||||++++.. .. .-...+.++.... ....+...+..+|.. +.
T Consensus 26 gi~~G-~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 102 (251)
T 2ehv_A 26 GFPEG-TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE--RARDLRREMASFGWDFEKYEKEGKIAIVDGVSS 102 (251)
T ss_dssp SEETT-CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS--CHHHHHHHHHTTTCCHHHHHHTTSEEEEC----
T ss_pred CCCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC--CHHHHHHHHHHcCCChHHHhhcCCEEEEEcccc
Confidence 46789 9999999999999999999931 11 1111222322221 111111112222211 00
Q ss_pred --------hhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCC-----hHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 004463 325 --------LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD-----PSEGVALATSILQYLRDRVGLAVVTTHY 390 (752)
Q Consensus 325 --------i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD-----~~~~~~L~~all~~l~~~~~tviitTH~ 390 (752)
.....+.++.+.. +.........+|++|+||||++++| +.....+.. ++..+.+.|+|+|++||+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~-l~~~l~~~g~tii~vtH~ 181 (251)
T 2ehv_A 103 VVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLK-LNTILLEMGVTTILTTEA 181 (251)
T ss_dssp ---------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHH-HHHHHHHHCCEEEEEECC
T ss_pred ccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHH-HHHHHHHCCCeEEEEECC
Confidence 0001111222222 1111222357999999999999996 444444554 778888889999999999
Q ss_pred hhHH----------hhh-ccccccc
Q 004463 391 ADLS----------CLK-DKDTRFE 404 (752)
Q Consensus 391 ~~l~----------~~a-~~~~~i~ 404 (752)
.+.. .+| |+++.+.
T Consensus 182 ~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 182 PDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp C----CCSSSSSCGGGGCSEEEEEE
T ss_pred CCCCcccccccChhhEeeeEEEEEe
Confidence 7743 577 8877764
No 84
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.45 E-value=4.5e-15 Score=149.48 Aligned_cols=59 Identities=12% Similarity=-0.173 Sum_probs=46.4
Q ss_pred HccCCCcEEEEeCCCCCC----ChHhHHHHHHHHHHHHh-cCCcEEEEEecchh-HHhhhcccccc
Q 004463 344 ELVSRESLVLIDEIGSGT----DPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRF 403 (752)
Q Consensus 344 ~la~~~~LlLLDEp~~gl----D~~~~~~L~~all~~l~-~~~~tviitTH~~~-l~~~a~~~~~i 403 (752)
+++.+|++++||||++|+ |+.....+... +..+. +.+.++|++|||++ ...+|++++.+
T Consensus 137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~-l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l 201 (207)
T 1znw_A 137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTA-RIELAAQGDFDKVVVNRRLESACAELVSLLVG 201 (207)
T ss_dssp EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHH-HHHHHGGGGSSEEEECSSHHHHHHHHHHHHC-
T ss_pred EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHH-HHHHhhhccCcEEEECCCHHHHHHHHHHHHHh
Confidence 467789999999999998 67788888874 44454 45889999999988 45689888765
No 85
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.43 E-value=6e-15 Score=159.77 Aligned_cols=137 Identities=14% Similarity=0.077 Sum_probs=93.8
Q ss_pred EcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCch
Q 004463 246 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQ 323 (752)
Q Consensus 246 ~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~ 323 (752)
++++++ | ..+ ++++.+.+| ++++|+|||||||||||+++ +|++.|.++...+...+ .+...
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~g-~~v~i~G~~GsGKTTll~~l--------~g~~~~~~g~i~i~~~~----e~~~~- 213 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAIG-KNVIVCGGTGSGKTTYIKSI--------MEFIPKEERIISIEDTE----EIVFK- 213 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHHT-CCEEEEESTTSCHHHHHHHG--------GGGSCTTSCEEEEESSC----CCCCS-
T ss_pred cCchhh-H--HHHHhhhhhhccCC-CEEEEECCCCCCHHHHHHHH--------hCCCcCCCcEEEECCee----ccccc-
Confidence 455666 5 234 788999999 89999999999999999999 77666655532221000 00110
Q ss_pred hhhcCcccch-HHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccc
Q 004463 324 SLEQNLSTFS-GHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDT 401 (752)
Q Consensus 324 ~i~~~~stlS-gg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~ 401 (752)
.....++-++ ||++ |+++++++..+|++||||||++. .+.. +++.+...+.++|+|||+.+....+++..
T Consensus 214 ~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~-~l~~~~~g~~tvi~t~H~~~~~~~~dri~ 285 (330)
T 2pt7_A 214 HHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRSS-------EAYD-FYNVLCSGHKGTLTTLHAGSSEEAFIRLA 285 (330)
T ss_dssp SCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHH-HHHHHHTTCCCEEEEEECSSHHHHHHHHH
T ss_pred cchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHH-HHHHHhcCCCEEEEEEcccHHHHHhhhhe
Confidence 0112222332 6777 88999999999999999999981 2233 44555543447999999998878899888
Q ss_pred cccCCc
Q 004463 402 RFENAA 407 (752)
Q Consensus 402 ~i~~g~ 407 (752)
.+.+|.
T Consensus 286 ~l~~g~ 291 (330)
T 2pt7_A 286 NMSSSN 291 (330)
T ss_dssp HHHHTS
T ss_pred ehhcCC
Confidence 777664
No 86
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.42 E-value=2.2e-14 Score=156.32 Aligned_cols=153 Identities=9% Similarity=0.100 Sum_probs=106.6
Q ss_pred eEEEcccccccC-CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-------h----------------
Q 004463 243 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S---------------- 295 (752)
Q Consensus 243 ~l~~~~ls~~y~-~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-------a---------------- 295 (752)
+++.+++++.|+ +..+ ++ |.+.+| ++++|+||||+||||||++| |++..- .
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~G-q~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~ 122 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIG-QRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQS 122 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETT-CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred CeeecccceecCCCCEEEEee-eeecCC-CEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhh
Confidence 456789999997 4333 66 999999 99999999999999999999 554321 0
Q ss_pred ---hhceeecCCCCCCchHHHHH---HHHcCCchh----------hhcCcccchHHHHHHHHHHHccCCCcEEEEeCCCC
Q 004463 296 ---KAGLYLPAKNHPRLPWFDLI---LADIGDHQS----------LEQNLSTFSGHISRIVDILELVSRESLVLIDEIGS 359 (752)
Q Consensus 296 ---q~G~~vP~~~~~~l~~~d~i---~~~ig~~~~----------i~~~~stlSgg~krl~~i~~la~~~~LlLLDEp~~ 359 (752)
+.-.++++.. .+...++ +..++..+. +-..++.||+|+++++++ +.+|.+ |+
T Consensus 123 ~~~~~v~~~~~~~---~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~la---l~~p~~------t~ 190 (347)
T 2obl_A 123 TLSKCVLVVTTSD---RPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLA---SGEPDV------RG 190 (347)
T ss_dssp HHTTEEEEEECTT---SCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHH---TTCCCC------BT
T ss_pred hhhceEEEEECCC---CCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHH---cCCCCc------cc
Confidence 0011222221 1111111 111111111 115688999999888877 466666 99
Q ss_pred CCChHhHHHHHHHHHHHHhc--CCc-----EEEEEecchhHHhhhcccccccCCceeec
Q 004463 360 GTDPSEGVALATSILQYLRD--RVG-----LAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 360 glD~~~~~~L~~all~~l~~--~~~-----tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
|+||.....+.. +++.+.. .|. ||+++|||++ ..+|+++..+.+|++.++
T Consensus 191 Gldp~~~~~l~~-ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~ 247 (347)
T 2obl_A 191 GFPPSVFSSLPK-LLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLT 247 (347)
T ss_dssp TBCHHHHHHHHH-HHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBC
T ss_pred CCCHHHHHHHHH-HHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEe
Confidence 999999999888 6676663 466 8999999998 678999999999998776
No 87
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=99.41 E-value=1.8e-13 Score=118.20 Aligned_cols=68 Identities=35% Similarity=0.559 Sum_probs=54.9
Q ss_pred ceeeccccHHHHHHHHHHHHHcc-------CCCCcEEEEecccc----hH--HHHHHHHHhhcCCCcccccCCCCCCCce
Q 004463 680 SLDLRGMRVEEASHQLDIALACW-------ESRSVLFVIHGMGT----GV--VKERVLEILRNHPRVAKYEQESPMNYGC 746 (752)
Q Consensus 680 ~ldlrG~r~eeA~~~vd~~ld~~-------~~~~~v~IiHG~Gt----G~--Lr~~v~~~L~~~p~V~~~~~~~~~~~G~ 746 (752)
+|||+||+++||+..|++||+++ .|.+.|+||||+|+ |+ ||.+|++||+++|+ .|.. .+.|+
T Consensus 2 ~lDLHGl~v~eA~~~l~~~l~~~~~~~~~~~g~~~v~II~GkG~hS~~g~~~Lk~~V~~~L~~~~~--~~~e---~n~G~ 76 (82)
T 3fau_A 2 SLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSF--RFSE---IKPGC 76 (82)
T ss_dssp CEECTTSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC---------CHHHHHHHHHHHTTC--CEEE---EETTE
T ss_pred eEECCCCcHHHHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCCCCcchHHHHHHHHHHhCCC--ceee---CCCEE
Confidence 69999999999999999999985 68889999999999 88 99999999999995 3432 24688
Q ss_pred EEEEEC
Q 004463 747 TVAYIK 752 (752)
Q Consensus 747 tvv~~~ 752 (752)
..|.||
T Consensus 77 l~V~l~ 82 (82)
T 3fau_A 77 LKVMLK 82 (82)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 888775
No 88
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.40 E-value=3.4e-13 Score=136.38 Aligned_cols=142 Identities=13% Similarity=0.114 Sum_probs=83.3
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhhhh------ceeecCCCCCCchHHHHHHHHcCCch-hhhcCc---ccc
Q 004463 264 VECETRVVVITGPNTGGKTASMKTL-GLASLMSKA------GLYLPAKNHPRLPWFDLILADIGDHQ-SLEQNL---STF 332 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~aq~------G~~vP~~~~~~l~~~d~i~~~ig~~~-~i~~~~---stl 332 (752)
+++| ++++|+||||||||||++++ |++.+-... -+++..........+..++..++... .+..++ ..+
T Consensus 22 i~~G-~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 100 (231)
T 4a74_A 22 IETQ-AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 100 (231)
T ss_dssp EESS-EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEECC
T ss_pred CCCC-cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEecC
Confidence 5788 99999999999999999999 443331111 12333222111223445555565432 222221 223
Q ss_pred hHHHH-H-HHHHHHc-------cCCCcEEEEeCCCCCCChHh------------HHHHHHHHHHHHhcCCcEEEEEecch
Q 004463 333 SGHIS-R-IVDILEL-------VSRESLVLIDEIGSGTDPSE------------GVALATSILQYLRDRVGLAVVTTHYA 391 (752)
Q Consensus 333 Sgg~k-r-l~~i~~l-------a~~~~LlLLDEp~~glD~~~------------~~~L~~all~~l~~~~~tviitTH~~ 391 (752)
+.... . +..+..+ ..+|++|+||||++++|+.. ...+...+.+...+.|+|||++||+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~ 180 (231)
T 4a74_A 101 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ 180 (231)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred ChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 33332 2 2333222 45999999999999999842 12556655555556689999999953
Q ss_pred h-----HHhhhcccccccCC
Q 004463 392 D-----LSCLKDKDTRFENA 406 (752)
Q Consensus 392 ~-----l~~~a~~~~~i~~g 406 (752)
. +..+|+..+.+.++
T Consensus 181 ~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 181 ANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp ---------CCSEEEEEEEC
T ss_pred cCcchhhHhhceEEEEEEec
Confidence 3 45577777776654
No 89
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.39 E-value=1.7e-15 Score=162.04 Aligned_cols=140 Identities=11% Similarity=-0.004 Sum_probs=98.4
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-HhhhhhhhhceeecCCCC--------CCch-
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNH--------PRLP- 310 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~aq~G~~vP~~~~--------~~l~- 310 (752)
+|+++||++.|+ .++ +++|++++| ++++|+||||||||||+++| |++ -+++-.++|+... ..+.
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~G-e~vaIvGpsGsGKSTLl~lL~gl~--~G~I~~~v~q~~~lf~~ti~~~ni~~ 176 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKK-NCLAFIGPPNTGKSMLCNSLIHFL--GGSVLSFANHKSHFWLASLADTRAAL 176 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTC-SEEEEECSSSSSHHHHHHHHHHHH--TCEEECGGGTTSGGGGGGGTTCSCEE
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCC-CEEEEECCCCCcHHHHHHHHhhhc--CceEEEEecCccccccccHHHHhhcc
Confidence 456789999997 444 899999999 99999999999999999999 665 1222223444321 0111
Q ss_pred ------HHHHHHHHcCCchhhhcCcccchHHHHHHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEE
Q 004463 311 ------WFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLA 384 (752)
Q Consensus 311 ------~~d~i~~~ig~~~~i~~~~stlSgg~krl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tv 384 (752)
.+...+..+ +.+-++ ...|||||+|. +++++.+|+||| |++||+.....+..
T Consensus 177 ~~~~~~~~~~~i~~~-L~~gld--g~~LSgGqkQR--ARAll~~p~iLl----Ts~LD~~~~~~i~~------------- 234 (305)
T 2v9p_A 177 VDDATHACWRYFDTY-LRNALD--GYPVSIDRKHK--AAVQIKAPPLLV----TSNIDVQAEDRYLY------------- 234 (305)
T ss_dssp EEEECHHHHHHHHHT-TTGGGG--TCCEECCCSSC--CCCEECCCCEEE----EESSCSTTCGGGGG-------------
T ss_pred CccccHHHHHHHHHH-hHccCC--ccCcCHHHHHH--HHHHhCCCCEEE----ECCCCHHHHHHHHH-------------
Confidence 122333332 222233 67999999944 899999999999 99999988777642
Q ss_pred EEEecchhHHhhhcccccccCCceeec
Q 004463 385 VVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 385 iitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
.||+.....+|+++ .+.+|.+...
T Consensus 235 --ltH~~~~~~~aD~i-vl~~G~iv~~ 258 (305)
T 2v9p_A 235 --LHSRVQTFRFEQPC-TDESGEQPFN 258 (305)
T ss_dssp --GTTTEEEEECCCCC-CCC---CCCC
T ss_pred --HhCCHHHHHhCCEE-EEeCCEEEEe
Confidence 18988877789999 9999988654
No 90
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.37 E-value=3.2e-12 Score=128.98 Aligned_cols=139 Identities=13% Similarity=0.035 Sum_probs=85.6
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHH-hhhhhhhhceeecCCCCCCchHHHHHHHHcCCch-hhh--------c------
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLG-LASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQ-SLE--------Q------ 327 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iG-li~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~-~i~--------~------ 327 (752)
+++| ++++|+||||+|||||++++. .+.......+++..+. ....+...+..++... ... .
T Consensus 20 i~~G-~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (235)
T 2w0m_A 20 IPQG-FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE--SRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKE 96 (235)
T ss_dssp EETT-CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS--CHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----
T ss_pred CcCC-CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc--CHHHHHHHHHHhcchHHHHhhCCEEEEeccccccC
Confidence 5788 899999999999999999993 3332222223333322 1111122222343211 000 0
Q ss_pred ---CcccchHHHH-HHHHHHHccCCCc--EEEEeCCCCCC--ChHhHHHHHHHHHHHHhcCCcEEEEEecch--------
Q 004463 328 ---NLSTFSGHIS-RIVDILELVSRES--LVLIDEIGSGT--DPSEGVALATSILQYLRDRVGLAVVTTHYA-------- 391 (752)
Q Consensus 328 ---~~stlSgg~k-rl~~i~~la~~~~--LlLLDEp~~gl--D~~~~~~L~~all~~l~~~~~tviitTH~~-------- 391 (752)
.....|.++. +.........+|+ +|+||||++++ |+.....+...+.+...+.++++|++||+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~ 176 (235)
T 2w0m_A 97 DQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFG 176 (235)
T ss_dssp CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC----------
T ss_pred ceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccc
Confidence 0122366665 3333333446899 99999999877 998888888866665566789999999998
Q ss_pred h-HHhhhcccccccC
Q 004463 392 D-LSCLKDKDTRFEN 405 (752)
Q Consensus 392 ~-l~~~a~~~~~i~~ 405 (752)
. +..+||.++.+..
T Consensus 177 ~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 177 FGVEHVADGIIRFRR 191 (235)
T ss_dssp -CHHHHCSEEEEEEE
T ss_pred cchheeeeEEEEEEE
Confidence 2 6668888777654
No 91
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.36 E-value=1.9e-12 Score=136.24 Aligned_cols=126 Identities=12% Similarity=0.093 Sum_probs=81.5
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh----------hhhceeecCCCCCCchHHH---------------HHHH
Q 004463 264 VECETRVVVITGPNTGGKTASMKTL-GLASLM----------SKAGLYLPAKNHPRLPWFD---------------LILA 317 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~----------aq~G~~vP~~~~~~l~~~d---------------~i~~ 317 (752)
+++| ++++|+||||+|||||++++ +.+.-- ....+|+..+... -.+.. .++.
T Consensus 27 l~~G-~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~-~~~~~r~~~~g~~~~~~~~~~~~~ 104 (279)
T 1nlf_A 27 MVAG-TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP-TAIHHRLHALGAHLSAEERQAVAD 104 (279)
T ss_dssp EETT-SEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH-HHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred ccCC-CEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCH-HHHHHHHHHHHhhcChhhhhhccC
Confidence 5788 89999999999999999999 333210 0112344444311 11111 1123
Q ss_pred HcCCchhhhcCcccchHHHHHHHHHHHccCCCcEEEEeCCCC--CCChHhH---HHHHHHHHHHHhcCCcEEEEEecchh
Q 004463 318 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGS--GTDPSEG---VALATSILQYLRDRVGLAVVTTHYAD 392 (752)
Q Consensus 318 ~ig~~~~i~~~~stlSgg~krl~~i~~la~~~~LlLLDEp~~--glD~~~~---~~L~~all~~l~~~~~tviitTH~~~ 392 (752)
.+++.+..++.+..||+++.+. +++++.+|++||||||++ ++|+... ..+...+.....+.|+|||++||+..
T Consensus 105 ~l~l~~~~~~~~~~ls~g~~~~--i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 105 GLLIQPLIGSLPNIMAPEWFDG--LKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HEEECCCTTSCCCTTSHHHHHH--HHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred ceEEeecCCCCcccCCHHHHHH--HHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 3444444566788999998643 345567899999999999 9998544 55666455544566999999999976
Q ss_pred H
Q 004463 393 L 393 (752)
Q Consensus 393 l 393 (752)
.
T Consensus 183 ~ 183 (279)
T 1nlf_A 183 G 183 (279)
T ss_dssp -
T ss_pred c
Confidence 4
No 92
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.35 E-value=1.6e-12 Score=137.87 Aligned_cols=148 Identities=12% Similarity=0.030 Sum_probs=85.9
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-hhhceeecCCCCCCchHHHHHHHHc-CC--------------
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-SKAGLYLPAKNHPRLPWFDLILADI-GD-------------- 321 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-aq~G~~vP~~~~~~l~~~d~i~~~i-g~-------------- 321 (752)
++++.+.+| ++++|+||||+|||||++++ |++..- ....+++..+. ..-.+..++.... +.
T Consensus 27 ~i~~~l~~G-~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~-~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~ 104 (296)
T 1cr0_A 27 DKTLGARGG-EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE-SVEETAEDLIGLHNRVRLRQSDSLKREIIE 104 (296)
T ss_dssp HHHCSBCTT-CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS-CHHHHHHHHHHHHTTCCGGGCHHHHHHHHH
T ss_pred HHhcCCCCC-eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC-CHHHHHHHHHHHHcCCChhhccccccCCCC
Confidence 566778999 99999999999999999999 444332 10112222211 0000111111100 00
Q ss_pred ---------------chhhhcCcccchHHH-HHHHHHHHccCCCcEEEEeCCCC---C---CCh-HhHHHHHHHHHHHHh
Q 004463 322 ---------------HQSLEQNLSTFSGHI-SRIVDILELVSRESLVLIDEIGS---G---TDP-SEGVALATSILQYLR 378 (752)
Q Consensus 322 ---------------~~~i~~~~stlSgg~-krl~~i~~la~~~~LlLLDEp~~---g---lD~-~~~~~L~~all~~l~ 378 (752)
.-.+......+|.++ ++...+++++.+|++||||||++ + +|+ .....+...+.+...
T Consensus 105 ~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~ 184 (296)
T 1cr0_A 105 NGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAK 184 (296)
T ss_dssp HTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 000112224567666 44444777889999999999999 4 344 444556664444334
Q ss_pred cCCcEEEEEecch-----------------------hHHhhhcccccccCCce
Q 004463 379 DRVGLAVVTTHYA-----------------------DLSCLKDKDTRFENAAT 408 (752)
Q Consensus 379 ~~~~tviitTH~~-----------------------~l~~~a~~~~~i~~g~v 408 (752)
+.+++||++||+. .+..+|+.++.+..+..
T Consensus 185 ~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 185 STGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5589999999995 45568888888876653
No 93
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.35 E-value=1.2e-12 Score=125.63 Aligned_cols=79 Identities=23% Similarity=0.243 Sum_probs=67.5
Q ss_pred hhhcCcccchHHHH-HHHHH------HHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhh
Q 004463 324 SLEQNLSTFSGHIS-RIVDI------LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 396 (752)
Q Consensus 324 ~i~~~~stlSgg~k-rl~~i------~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~ 396 (752)
..++++++|||||+ |++++ ++++.+|+++||||||+|||+.....+.. ++..+.+.|.++|++||+.++..+
T Consensus 50 ~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiiivsH~~~~~~~ 128 (148)
T 1f2t_B 50 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-IMERYLKKIPQVILVSHDEELKDA 128 (148)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHH-HHHHTGGGSSEEEEEESCGGGGGG
T ss_pred cccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHH-HHHHHHccCCEEEEEEChHHHHHh
Confidence 35678999999999 77654 67889999999999999999999999988 555566668899999999988788
Q ss_pred hcccccc
Q 004463 397 KDKDTRF 403 (752)
Q Consensus 397 a~~~~~i 403 (752)
|++++.+
T Consensus 129 ~d~ii~l 135 (148)
T 1f2t_B 129 ADHVIRI 135 (148)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 9988877
No 94
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.34 E-value=7.7e-14 Score=160.15 Aligned_cols=142 Identities=15% Similarity=0.123 Sum_probs=88.2
Q ss_pred eeeE-EEccCceEEEEEcCCCCCHHHHHHH--H-HhhhhhhhhceeecCCCCCCchHHHHHHHHcCCc-h----------
Q 004463 259 PIDI-KVECETRVVVITGPNTGGKTASMKT--L-GLASLMSKAGLYLPAKNHPRLPWFDLILADIGDH-Q---------- 323 (752)
Q Consensus 259 ~idl-~l~~g~~~~~I~GpNGsGKSTlLK~--i-Gli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~-~---------- 323 (752)
++++ .+++| ++++|+||||||||||+++ + |++.+-. -..++-... .... +......+|.. |
T Consensus 30 ~i~~G~i~~G-e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~-g~i~v~g~~-~~~~-~~~~~~~~g~~~q~~~~~~~l~~ 105 (525)
T 1tf7_A 30 DISHGGLPIG-RSTLVSGTSGTGKTLFSIQFLYNGIIEFDE-PGVFVTFEE-TPQD-IIKNARSFGWDLAKLVDEGKLFI 105 (525)
T ss_dssp HHTTSSEETT-SEEEEEESTTSSHHHHHHHHHHHHHHHHCC-CEEEEESSS-CHHH-HHHHHGGGTCCHHHHHHTTSEEE
T ss_pred HhcCCCCCCC-eEEEEEcCCCCCHHHHHHHHHHHHHHhCCC-CEEEEEEeC-CHHH-HHHHHHHcCCChHHhhccCcEEE
Confidence 8899 99999 9999999999999999999 4 5554321 112332211 1101 11111111110 0
Q ss_pred -------hhhcCcccchHHHHHHHHHHHc-cCCCcEEEEeCCCC-----CCChHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 004463 324 -------SLEQNLSTFSGHISRIVDILEL-VSRESLVLIDEIGS-----GTDPSEGVALATSILQYLRDRVGLAVVTTHY 390 (752)
Q Consensus 324 -------~i~~~~stlSgg~krl~~i~~l-a~~~~LlLLDEp~~-----glD~~~~~~L~~all~~l~~~~~tviitTH~ 390 (752)
....-+..|..+...-..+..+ ..+|.+|+||||++ ++|+..+..+.. ++..+.+.|.|+|++||+
T Consensus 106 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~-ll~~l~~~g~tvl~itH~ 184 (525)
T 1tf7_A 106 LDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFR-LVARLKQIGATTVMTTER 184 (525)
T ss_dssp EECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHH-HHHHHHHHTCEEEEEEEC
T ss_pred EecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHH-HHHHHHHCCCEEEEEecC
Confidence 0011122333332211222222 36899999999997 468888888887 777788789999999999
Q ss_pred hhH----------HhhhcccccccC
Q 004463 391 ADL----------SCLKDKDTRFEN 405 (752)
Q Consensus 391 ~~l----------~~~a~~~~~i~~ 405 (752)
.+. ..+||+++.+.+
T Consensus 185 ~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 185 IEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp SSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred CCCccccccccceeeeeeEEEEEEE
Confidence 874 245999888876
No 95
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.33 E-value=3.7e-13 Score=143.91 Aligned_cols=121 Identities=14% Similarity=0.110 Sum_probs=82.7
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh--------------h----------hhc-eeecCCCCCCc---
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------S----------KAG-LYLPAKNHPRL--- 309 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~--------------a----------q~G-~~vP~~~~~~l--- 309 (752)
+++|.+.+| ++++|+|||||||||+++.+ |++... + +.+ .++|+......
T Consensus 92 ~l~~~~~~g-~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 92 ELQLGFRKP-AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp SCCCCSSSC-EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred ccccccCCC-cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 677888889 99999999999999999999 665321 0 111 35565532022
Q ss_pred hHHHHHHH------------HcCCchhhhcCcccchHHHHHHHHHHHccCCCc--EEEEeCCCCCCChHhHHHHHHHHHH
Q 004463 310 PWFDLILA------------DIGDHQSLEQNLSTFSGHISRIVDILELVSRES--LVLIDEIGSGTDPSEGVALATSILQ 375 (752)
Q Consensus 310 ~~~d~i~~------------~ig~~~~i~~~~stlSgg~krl~~i~~la~~~~--LlLLDEp~~glD~~~~~~L~~all~ 375 (752)
.+++++.. .+|..+..++.+.+|| .+|++++++++.+|+ +|+|| ||+|+|+.... .
T Consensus 171 ~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS--kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~-------~ 240 (302)
T 3b9q_A 171 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI--ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA-------R 240 (302)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH--HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH-------H
T ss_pred HHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH--HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH-------H
Confidence 23444421 1233344455666788 458888899999999 99999 99999997542 2
Q ss_pred HHh-cCCcEEEEEecc
Q 004463 376 YLR-DRVGLAVVTTHY 390 (752)
Q Consensus 376 ~l~-~~~~tviitTH~ 390 (752)
.+. ..+.++|++||.
T Consensus 241 ~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 241 EFNEVVGITGLILTKL 256 (302)
T ss_dssp HHHHHTCCCEEEEECC
T ss_pred HHHHhcCCCEEEEeCC
Confidence 233 458899999994
No 96
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.32 E-value=1e-13 Score=145.24 Aligned_cols=126 Identities=12% Similarity=0.106 Sum_probs=77.3
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH-HhhhhhhhhceeecCCCCCCchHHHHHHHHcC-Cch-hhhcCcccchHH
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIG-DHQ-SLEQNLSTFSGH 335 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig-~~~-~i~~~~stlSgg 335 (752)
+++ +.+| ++++|+|||||||||||+++ |++.... .|..........+- +... .+ ..+ .+.....+|
T Consensus 19 ~i~--i~~g-~~v~i~Gp~GsGKSTll~~l~g~~~~~~-~G~I~~~g~~i~~~-~~~~---~~~v~q~~~gl~~~~l--- 87 (261)
T 2eyu_A 19 ELC--HRKM-GLILVTGPTGSGKSTTIASMIDYINQTK-SYHIITIEDPIEYV-FKHK---KSIVNQREVGEDTKSF--- 87 (261)
T ss_dssp HGG--GCSS-EEEEEECSTTCSHHHHHHHHHHHHHHHC-CCEEEEEESSCCSC-CCCS---SSEEEEEEBTTTBSCH---
T ss_pred HHh--hCCC-CEEEEECCCCccHHHHHHHHHHhCCCCC-CCEEEEcCCcceee-cCCc---ceeeeHHHhCCCHHHH---
Confidence 666 7888 89999999999999999999 5543320 12111100000000 0000 00 000 000011233
Q ss_pred HHHHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccC
Q 004463 336 ISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFEN 405 (752)
Q Consensus 336 ~krl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~ 405 (752)
+++++.+++.+|++||+|||+ |+.....+ ++.. ..|.+++++||+.+...++++.+.+..
T Consensus 88 --~~~la~aL~~~p~illlDEp~---D~~~~~~~----l~~~-~~g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 --ADALRAALREDPDVIFVGEMR---DLETVETA----LRAA-ETGHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp --HHHHHHHHHHCCSEEEESCCC---SHHHHHHH----HHHH-HTTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred --HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH----HHHH-ccCCEEEEEeCcchHHHHHHHHhhhcC
Confidence 677778888899999999999 88775433 3332 458899999999887778887766543
No 97
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.32 E-value=2.8e-13 Score=151.94 Aligned_cols=156 Identities=9% Similarity=0.089 Sum_probs=110.1
Q ss_pred eEEEcccccccC-CeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhh-------h-----------------
Q 004463 243 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------M----------------- 294 (752)
Q Consensus 243 ~l~~~~ls~~y~-~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-------~----------------- 294 (752)
+++++++++.|+ +..+ ++ |.+.+| ++++|+|||||||||||++| |+... .
T Consensus 131 ~l~~~~v~~~~~tg~~vld~v-l~i~~G-q~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 131 PLQRTPIEHVLDTGVRAINAL-LTVGRG-QRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp TTTSCCCCSBCCCSCHHHHHH-SCCBTT-CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred ceEEeccceecCCCceEEeee-EEecCC-CEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 456789999997 4444 78 999999 99999999999999999999 55421 1
Q ss_pred ---hhhceeecCCCCCCc---hHHHHHH---HHcCC-c---hhhhcCcccchHHHHHHHHHHHccCCCcEEEEeCCCCCC
Q 004463 295 ---SKAGLYLPAKNHPRL---PWFDLIL---ADIGD-H---QSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGT 361 (752)
Q Consensus 295 ---aq~G~~vP~~~~~~l---~~~d~i~---~~ig~-~---~~i~~~~stlSgg~krl~~i~~la~~~~LlLLDEp~~gl 361 (752)
.+.-.++++.....+ ...+++. ..++. . ..+-..++.||+|++|++++ +.+|++ |+|+
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslA---l~~p~~------t~gl 279 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA---IGEPPA------TKGY 279 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHH---TTCCCC------SSSC
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHH---hCCCcc------cccC
Confidence 111246666422111 1122221 11111 1 11224578999999888888 677777 9999
Q ss_pred ChHhHHHHHHHHHHHHhc---C-Cc-----EEEEEecchhHHhhhcccccccCCceeec
Q 004463 362 DPSEGVALATSILQYLRD---R-VG-----LAVVTTHYADLSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 362 D~~~~~~L~~all~~l~~---~-~~-----tviitTH~~~l~~~a~~~~~i~~g~v~~~ 411 (752)
||.....+.. +++.+.+ . |. |++++|||++ ..+|++...+.+|++.++
T Consensus 280 D~~~~~~l~~-ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~ 336 (438)
T 2dpy_A 280 PPSVFAKLPA-LVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLS 336 (438)
T ss_dssp CTTHHHHHHH-HHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEEC
T ss_pred CHHHHHHHHH-HHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEe
Confidence 9999999988 5555654 2 53 8999999998 678999999999998775
No 98
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.31 E-value=1.8e-14 Score=154.90 Aligned_cols=153 Identities=7% Similarity=0.069 Sum_probs=99.4
Q ss_pred CCeEEEcccccccCCeeEeeeEE-----------------------EccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh-
Q 004463 241 NSEMTVGSLSKGISDFPVPIDIK-----------------------VECETRVVVITGPNTGGKTASMKTL-GLASLMS- 295 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~~v~idl~-----------------------l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a- 295 (752)
+++|++++|++.|+...-.+++. +.+| .+++|+||||||||||+++| |++....
T Consensus 41 ~~~i~~~~v~~~y~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g-~ivgI~G~sGsGKSTL~~~L~gll~~~~G 119 (312)
T 3aez_A 41 GEQIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVP-FIIGVAGSVAVGKSTTARVLQALLARWDH 119 (312)
T ss_dssp TCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCC-EEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred CCeEEeeehhhhhhhHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCC-EEEEEECCCCchHHHHHHHHHhhccccCC
Confidence 35678899999995211133432 6778 89999999999999999999 7765431
Q ss_pred --hhceeecCCCCC---------------------CchHHHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcE
Q 004463 296 --KAGLYLPAKNHP---------------------RLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL 351 (752)
Q Consensus 296 --q~G~~vP~~~~~---------------------~l~~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~L 351 (752)
++ .++|++... ....+..++..++ ....+..+.+||+|++ |+.++++++.+|++
T Consensus 120 ~~~v-~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~i 197 (312)
T 3aez_A 120 HPRV-DLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDI 197 (312)
T ss_dssp CCCE-EEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSE
T ss_pred CCeE-EEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCE
Confidence 12 345554310 0112344455555 3333467889999999 78888899999999
Q ss_pred EEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH--HhhhcccccccC
Q 004463 352 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL--SCLKDKDTRFEN 405 (752)
Q Consensus 352 lLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l--~~~a~~~~~i~~ 405 (752)
||||||+...|+.. . .+.+.--.+|+++|+.++ ..+..+...+.+
T Consensus 198 lIlDep~~~~d~~~-~--------~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd 244 (312)
T 3aez_A 198 LILEGLNVLQTGPT-L--------MVSDLFDFSLYVDARIEDIEQWYVSRFLAMRT 244 (312)
T ss_dssp EEEECTTTTCCCSS-C--------CGGGGCSEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred EEECCccccCCcch-H--------HHHHhcCcEEEEECCHHHHHHHHHHHHHHHHh
Confidence 99999999998622 0 112212355777777663 335555444433
No 99
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.27 E-value=1.7e-12 Score=141.85 Aligned_cols=122 Identities=14% Similarity=0.111 Sum_probs=83.4
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----------------------h-hhc-eeecCCCCCCc---
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------S-KAG-LYLPAKNHPRL--- 309 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----------------------a-q~G-~~vP~~~~~~l--- 309 (752)
+++|++.+| ++++|+|||||||||+++.+ |++... + +.+ .++|+......
T Consensus 149 ~l~l~~~~g-~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 149 ELQLGFRKP-AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp SCCCCSSSS-EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CcceecCCC-eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 677888889 99999999999999999999 665321 0 112 24565532012
Q ss_pred hHHHHHHH------------HcCCchhhhcCcccchHHHHHHHHHHHccCCCc--EEEEeCCCCCCChHhHHHHHHHHHH
Q 004463 310 PWFDLILA------------DIGDHQSLEQNLSTFSGHISRIVDILELVSRES--LVLIDEIGSGTDPSEGVALATSILQ 375 (752)
Q Consensus 310 ~~~d~i~~------------~ig~~~~i~~~~stlSgg~krl~~i~~la~~~~--LlLLDEp~~glD~~~~~~L~~all~ 375 (752)
..++++.. .+|..+..++.+.+|| .+|++++++++.+|. ||+|| ||+|+|+.... ..
T Consensus 228 tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS--kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~ 298 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI--ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------RE 298 (359)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH--HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HH
T ss_pred hHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH--HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HH
Confidence 23444421 1233344455666788 458888999999999 99999 99999997542 12
Q ss_pred HHhcCCcEEEEEecc
Q 004463 376 YLRDRVGLAVVTTHY 390 (752)
Q Consensus 376 ~l~~~~~tviitTH~ 390 (752)
+....+.++|++||.
T Consensus 299 ~~~~~g~t~iiiThl 313 (359)
T 2og2_A 299 FNEVVGITGLILTKL 313 (359)
T ss_dssp HHHHTCCCEEEEESC
T ss_pred HHHhcCCeEEEEecC
Confidence 222358899999994
No 100
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.26 E-value=1e-12 Score=128.78 Aligned_cols=109 Identities=15% Similarity=0.196 Sum_probs=70.4
Q ss_pred eEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCC--CchHHHHHHHHcCCchhhhcCcccchHHHHH
Q 004463 261 DIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP--RLPWFDLILADIGDHQSLEQNLSTFSGHISR 338 (752)
Q Consensus 261 dl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~--~l~~~d~i~~~ig~~~~i~~~~stlSgg~kr 338 (752)
++.+..| +.++|+||||+|||||++++ ++...|..+.. .++ +..++..+. ..++.+...
T Consensus 32 ~~~~~~g-~~~~l~G~~G~GKTtL~~~i--------~~~~~~~~g~~~~~~~-~~~~~~~~~---------~~~~~~~~~ 92 (180)
T 3ec2_A 32 NFNPEEG-KGLTFVGSPGVGKTHLAVAT--------LKAIYEKKGIRGYFFD-TKDLIFRLK---------HLMDEGKDT 92 (180)
T ss_dssp SCCGGGC-CEEEECCSSSSSHHHHHHHH--------HHHHHHHSCCCCCEEE-HHHHHHHHH---------HHHHHTCCS
T ss_pred hccccCC-CEEEEECCCCCCHHHHHHHH--------HHHHHHHcCCeEEEEE-HHHHHHHHH---------HHhcCchHH
Confidence 4556678 89999999999999999999 44443333311 112 122221110 001111000
Q ss_pred HHHHHHccCCCcEEEEeCCCC-CCChHhHHHHHHHHHHHHhcCCcEEEEEecch
Q 004463 339 IVDILELVSRESLVLIDEIGS-GTDPSEGVALATSILQYLRDRVGLAVVTTHYA 391 (752)
Q Consensus 339 l~~i~~la~~~~LlLLDEp~~-glD~~~~~~L~~all~~l~~~~~tviitTH~~ 391 (752)
.++....+|++|+||||++ ++|+.....+.. +++...+.+.++|+|||+.
T Consensus 93 --~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~-ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 93 --KFLKTVLNSPVLVLDDLGSERLSDWQRELISY-IITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp --HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHH-HHHHHHHTTCEEEEECCCC
T ss_pred --HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHH-HHHHHHHcCCCEEEEcCCC
Confidence 1222334899999999995 899988887776 7777777789999999985
No 101
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.23 E-value=4.2e-11 Score=120.11 Aligned_cols=139 Identities=19% Similarity=0.124 Sum_probs=84.6
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCch-h-hh-cCcccchHHH--H-
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQ-S-LE-QNLSTFSGHI--S- 337 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~-~-i~-~~~stlSgg~--k- 337 (752)
+++| ++++|+||||+|||||++.+.. ......+|+..+.......+..++..++... . .+ -.+...++++ .
T Consensus 17 i~~G-~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 17 FAPG-VLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp BCTT-SEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CcCC-EEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 5678 8999999999999999999943 1112224555443222223344444444321 1 11 1223333332 2
Q ss_pred HHHHHHHccCC-CcEEEEeCCCCCCChHhH--------HHHHHHHHHHHhcCCcEEEEEecchh--------------HH
Q 004463 338 RIVDILELVSR-ESLVLIDEIGSGTDPSEG--------VALATSILQYLRDRVGLAVVTTHYAD--------------LS 394 (752)
Q Consensus 338 rl~~i~~la~~-~~LlLLDEp~~glD~~~~--------~~L~~all~~l~~~~~tviitTH~~~--------------l~ 394 (752)
.+..+++++.. |++|++|||++++|+... ..+...+.+...+.++++|+++|... +.
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~ 173 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLG 173 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHH
T ss_pred HHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCccee
Confidence 56666677765 999999999999998432 33444344444455889999999854 34
Q ss_pred hhhcccccccC
Q 004463 395 CLKDKDTRFEN 405 (752)
Q Consensus 395 ~~a~~~~~i~~ 405 (752)
.+|+.++.+..
T Consensus 174 ~~~d~vi~l~~ 184 (220)
T 2cvh_A 174 YRCKDILRLDK 184 (220)
T ss_dssp HTSSEEEEEEE
T ss_pred ecCcEEEEEEE
Confidence 56777666543
No 102
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.19 E-value=1.4e-12 Score=137.32 Aligned_cols=114 Identities=18% Similarity=0.072 Sum_probs=71.8
Q ss_pred EEEEEcCCCCCHHHHHHHH-Hhhhhhh----------------hhceeecCCCCC--CchHHH--------------HHH
Q 004463 270 VVVITGPNTGGKTASMKTL-GLASLMS----------------KAGLYLPAKNHP--RLPWFD--------------LIL 316 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i-Gli~~~a----------------q~G~~vP~~~~~--~l~~~d--------------~i~ 316 (752)
.++|+||||+|||||||+| |+..+-. +.-.++|+.... .++++| ..+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 4799999999999999999 6654321 111233443210 111100 111
Q ss_pred HHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh
Q 004463 317 ADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 392 (752)
Q Consensus 317 ~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~ 392 (752)
..+...+..+....+||||++ |+.++++++. |++||||+.|+||.+.. +++.+.+. .++|++.|..+
T Consensus 84 ~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~-----~l~~L~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 84 EKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLE-----FMKHLSKV-VNIIPVIAKAD 151 (270)
T ss_dssp HHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHH-----HHHHHHTT-SEEEEEETTGG
T ss_pred HHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHH-----HHHHHHhc-CcEEEEEeccc
Confidence 222224455667789999998 7887777664 99999999999998832 44556666 77877777654
No 103
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.18 E-value=4.9e-13 Score=136.07 Aligned_cols=127 Identities=13% Similarity=0.016 Sum_probs=76.1
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhhhh--ce----------------eecCCCCCCchHHHHHHH--
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKA--GL----------------YLPAKNHPRLPWFDLILA-- 317 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~aq~--G~----------------~vP~~~~~~l~~~d~i~~-- 317 (752)
++||++++| ++++|+||||||||||+++| |+.. +.. |. |+|++ ...|.....
T Consensus 15 ~isl~i~~G-~~~~lvGpsGsGKSTLl~~L~g~~p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~ 87 (218)
T 1z6g_A 15 VPRGSMNNI-YPLVICGPSGVGKGTLIKKLLNEFP--NYFYFSVSCTTRKKREKEKEGVDYYFID----KTIFEDKLKNE 87 (218)
T ss_dssp -------CC-CCEEEECSTTSSHHHHHHHHHHHST--TTEEECCCEECSCCCSSCCBTTTBEECC----HHHHHHHHHTT
T ss_pred CCceecCCC-CEEEEECCCCCCHHHHHHHHHhhCC--CcEEEeecccCCCCCcccccCCeEEECC----HHHHHHhhhcc
Confidence 789999999 99999999999999999999 6552 111 00 11111 011222110
Q ss_pred -H-----c-----CCc-h----hhhc-----CcccchHHHH-HHHH-----HHHccCCCcEEEEeCCCCCCChHhHHHHH
Q 004463 318 -D-----I-----GDH-Q----SLEQ-----NLSTFSGHIS-RIVD-----ILELVSRESLVLIDEIGSGTDPSEGVALA 370 (752)
Q Consensus 318 -~-----i-----g~~-~----~i~~-----~~stlSgg~k-rl~~-----i~~la~~~~LlLLDEp~~glD~~~~~~L~ 370 (752)
. + |.. . .+.. .-..+|||++ |+++ ++.++.+|++++||||++++|......+.
T Consensus 88 ~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~ 167 (218)
T 1z6g_A 88 DFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQ 167 (218)
T ss_dssp CEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHH
T ss_pred chhhhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHH
Confidence 0 0 000 0 0000 0146799999 6776 56788899999999999999998877777
Q ss_pred HHHHHHHhc------CCcEEEEEecchh
Q 004463 371 TSILQYLRD------RVGLAVVTTHYAD 392 (752)
Q Consensus 371 ~all~~l~~------~~~tviitTH~~~ 392 (752)
..+.....+ ..+..|+++|+.+
T Consensus 168 ~~l~~~~~~~~~~h~~~~d~iiv~~~~~ 195 (218)
T 1z6g_A 168 KRMEQLNIELHEANLLNFNLSIINDDLT 195 (218)
T ss_dssp HHHHHHHHHHHHHTTSCCSEEEECSSHH
T ss_pred HHHHHHHHHHHhhcccCCCEEEECCCHH
Confidence 655443322 4567888999866
No 104
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.17 E-value=3.4e-11 Score=145.32 Aligned_cols=97 Identities=25% Similarity=0.284 Sum_probs=83.5
Q ss_pred HHHHHcCCch-hhhcCcccchHHHH-HHHHHHHccCCCc--EEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEec
Q 004463 314 LILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRES--LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTH 389 (752)
Q Consensus 314 ~i~~~ig~~~-~i~~~~stlSgg~k-rl~~i~~la~~~~--LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH 389 (752)
.++..+|+.. ..++.+++|||||+ |+.++++++.+|+ ++||||||+||||.+...|.. +++.+.+.|.|||++||
T Consensus 446 ~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~-~L~~L~~~G~TvivVtH 524 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIK-TLKKLRDLGNTVIVVEH 524 (916)
T ss_dssp HHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHH-HHHHTTTTTCEEEEECC
T ss_pred HHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHH-HHHHHHhcCCEEEEEeC
Confidence 3466678865 47899999999999 8999999998777 999999999999999999998 67778888999999999
Q ss_pred chhHHhhhcccccc------cCCceeec
Q 004463 390 YADLSCLKDKDTRF------ENAATEFS 411 (752)
Q Consensus 390 ~~~l~~~a~~~~~i------~~g~v~~~ 411 (752)
|+++...||+++.+ .+|.+.+.
T Consensus 525 d~~~~~~aD~ii~lgpgag~~~G~iv~~ 552 (916)
T 3pih_A 525 DEEVIRNADHIIDIGPGGGTNGGRVVFQ 552 (916)
T ss_dssp CHHHHHTCSEEEEEESSSGGGCSEEEEE
T ss_pred CHHHHHhCCEEEEEcCCcccCCCEEEEe
Confidence 99977779999988 66666553
No 105
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.16 E-value=6e-11 Score=142.60 Aligned_cols=95 Identities=23% Similarity=0.242 Sum_probs=83.4
Q ss_pred HHHcCCch-hhhcCcccchHHHH-HHHHHHHccCC--CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecch
Q 004463 316 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR--ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 391 (752)
Q Consensus 316 ~~~ig~~~-~i~~~~stlSgg~k-rl~~i~~la~~--~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~ 391 (752)
+..+|+.. .+++.+++|||||+ |+.++.+++.+ |.|+||||||+||||.+...|.. +++.|.+.|.|||++||++
T Consensus 488 L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~-~L~~Lr~~G~TVIvVeHdl 566 (972)
T 2r6f_A 488 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIA-TLKSMRDLGNTLIVVEHDE 566 (972)
T ss_dssp HHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHH-HHHHHHTTTCEEEEECCCH
T ss_pred hhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCH
Confidence 67788875 47999999999999 89999999987 48999999999999999999998 7777888899999999999
Q ss_pred hHHhhhcccccc------cCCceeec
Q 004463 392 DLSCLKDKDTRF------ENAATEFS 411 (752)
Q Consensus 392 ~l~~~a~~~~~i------~~g~v~~~ 411 (752)
+....||+++.+ .+|.+.+.
T Consensus 567 ~~i~~ADrIi~LgpgaG~~gG~iv~~ 592 (972)
T 2r6f_A 567 DTMLAADYLIDIGPGAGIHGGEVVAA 592 (972)
T ss_dssp HHHHSCSEEEEECSSSGGGCCSEEEE
T ss_pred HHHHhCCEEEEeCCCccCCCCEEEEe
Confidence 977789999988 56777654
No 106
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.14 E-value=7.3e-11 Score=142.34 Aligned_cols=95 Identities=26% Similarity=0.224 Sum_probs=82.6
Q ss_pred HHHcCCch-hhhcCcccchHHHH-HHHHHHHccCC--CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecch
Q 004463 316 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR--ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 391 (752)
Q Consensus 316 ~~~ig~~~-~i~~~~stlSgg~k-rl~~i~~la~~--~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~ 391 (752)
+..+|+.. .+++.+++|||||+ |+.++.+++.+ |.|+||||||+||||.+...|.. +++.|.+.|.|||++||++
T Consensus 505 L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~-~L~~Lr~~G~TVIvVeHdl 583 (993)
T 2ygr_A 505 LLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIE-TLTRLRDLGNTLIVVEHDE 583 (993)
T ss_dssp HHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECCCH
T ss_pred HhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHH-HHHHHHHcCCEEEEECCCH
Confidence 66778875 47999999999999 89999999988 58999999999999999999998 7777888899999999999
Q ss_pred hHHhhhcccccc------cCCceeec
Q 004463 392 DLSCLKDKDTRF------ENAATEFS 411 (752)
Q Consensus 392 ~l~~~a~~~~~i------~~g~v~~~ 411 (752)
++...||+++.+ .+|.+.+.
T Consensus 584 ~~i~~ADrIi~Lgp~aG~~gG~iv~~ 609 (993)
T 2ygr_A 584 DTIEHADWIVDIGPGAGEHGGRIVHS 609 (993)
T ss_dssp HHHHTCSEEEEECSSSGGGCCSCCEE
T ss_pred HHHHhCCEEEEecCccccCCCEEEEe
Confidence 977789999888 46666543
No 107
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.14 E-value=1.3e-11 Score=127.40 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=73.5
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhh-----hhhceeecCCCC-CCchHHHHH----------------
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----SKAGLYLPAKNH-PRLPWFDLI---------------- 315 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~-----aq~G~~vP~~~~-~~l~~~d~i---------------- 315 (752)
++||++.+| .+++|+||||||||||+|++ |++-.. ++.-.++|++.. ..++..+.+
T Consensus 17 ~isl~i~~g-~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 95 (245)
T 2jeo_A 17 NLYFQSMRP-FLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFD 95 (245)
T ss_dssp ------CCS-EEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTSGGGBC
T ss_pred ceeccCCCC-EEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCCccccc
Confidence 899999999 89999999999999999999 543110 111124454421 112222211
Q ss_pred -------HHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEE
Q 004463 316 -------LADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVT 387 (752)
Q Consensus 316 -------~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviit 387 (752)
+..+ .+.....+..||+|++ |+.. .+++.+|++||||||....++. +. + + .+.+++++
T Consensus 96 ~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~----l~----~-~--~~~~i~v~ 161 (245)
T 2jeo_A 96 NDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE----IR----D-M--FHLRLFVD 161 (245)
T ss_dssp HHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH----HH----T-T--CSEEEEEE
T ss_pred HHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH----HH----H-h--cCeEEEEE
Confidence 1111 1223456778999998 6644 5677889999999988777753 11 1 1 26799999
Q ss_pred ecc-hhHHhh
Q 004463 388 THY-ADLSCL 396 (752)
Q Consensus 388 TH~-~~l~~~ 396 (752)
||+ ..+.+.
T Consensus 162 th~~~~~~r~ 171 (245)
T 2jeo_A 162 TDSDVRLSRR 171 (245)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 997 445443
No 108
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.13 E-value=9.7e-11 Score=140.26 Aligned_cols=95 Identities=22% Similarity=0.204 Sum_probs=83.1
Q ss_pred HHHcCCchh-hhcCcccchHHHH-HHHHHHHccCCC--cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecch
Q 004463 316 LADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRE--SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA 391 (752)
Q Consensus 316 ~~~ig~~~~-i~~~~stlSgg~k-rl~~i~~la~~~--~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~ 391 (752)
+..+|+... +++.+++|||||+ |++++.+++.+| .|+||||||+||||.+...|.. +++.|.+.|.|||++||++
T Consensus 363 L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~-~l~~L~~~G~TVIvVeHdl 441 (842)
T 2vf7_A 363 LLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLS-ALENLKRGGNSLFVVEHDL 441 (842)
T ss_dssp HHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHH-HHHHHHTTTCEEEEECCCH
T ss_pred HHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHH-HHHHHHHcCCEEEEEcCCH
Confidence 567788754 7999999999999 899999999998 4999999999999999999998 7788898999999999999
Q ss_pred hHHhhhcccccc------cCCceeec
Q 004463 392 DLSCLKDKDTRF------ENAATEFS 411 (752)
Q Consensus 392 ~l~~~a~~~~~i------~~g~v~~~ 411 (752)
++...||+++.+ .+|.+.+.
T Consensus 442 ~~l~~aD~ii~lgpgaG~~~G~iv~~ 467 (842)
T 2vf7_A 442 DVIRRADWLVDVGPEAGEKGGEILYS 467 (842)
T ss_dssp HHHTTCSEEEEECSSSGGGCCSEEEE
T ss_pred HHHHhCCEEEEeCCCcccCCCEEEEe
Confidence 977789999888 45655554
No 109
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.12 E-value=1.3e-11 Score=134.74 Aligned_cols=124 Identities=15% Similarity=0.107 Sum_probs=73.1
Q ss_pred EEccCceEEEEEcCCCCCHHHHHHHH-HhhhhhhhhceeecCCCCCCchHHHHHHHHcC-Cch-hhhcCcccchHHHHHH
Q 004463 263 KVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIG-DHQ-SLEQNLSTFSGHISRI 339 (752)
Q Consensus 263 ~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig-~~~-~i~~~~stlSgg~krl 339 (752)
...++ .+++|+|||||||||||+++ |++.... .|..+-.+....+.. .. ..+ ..+ .+....-+|..
T Consensus 119 ~~~~~-g~i~I~GptGSGKTTlL~~l~g~~~~~~-~~~i~t~ed~~e~~~-~~---~~~~v~q~~~~~~~~~~~~----- 187 (356)
T 3jvv_A 119 SDVPR-GLVLVTGPTGSGKSTTLAAMLDYLNNTK-YHHILTIEDPIEFVH-ES---KKCLVNQREVHRDTLGFSE----- 187 (356)
T ss_dssp HHCSS-EEEEEECSTTSCHHHHHHHHHHHHHHHC-CCEEEEEESSCCSCC-CC---SSSEEEEEEBTTTBSCHHH-----
T ss_pred HhCCC-CEEEEECCCCCCHHHHHHHHHhcccCCC-CcEEEEccCcHHhhh-hc---cccceeeeeeccccCCHHH-----
Confidence 34566 69999999999999999998 5554321 011110000011100 00 000 000 01111112222
Q ss_pred HHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccC
Q 004463 340 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFEN 405 (752)
Q Consensus 340 ~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~ 405 (752)
++++++..+|++||+|||+ |+.....+. + +...|.++|+|||+.+....+++.+.+..
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~----~-~~~~G~~vl~t~H~~~~~~~~dRli~l~~ 245 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLAL----T-AAETGHLVFGTLHTTSAAKTIDRVVDVFP 245 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHH----H-HHHTTCEEEEEESCSSHHHHHHHHHHTSC
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHH----H-HHhcCCEEEEEEccChHHHHHHHHhhhcC
Confidence 6778899999999999998 655433322 2 34558999999999987788888776643
No 110
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.11 E-value=2.4e-10 Score=124.51 Aligned_cols=130 Identities=16% Similarity=0.157 Sum_probs=78.8
Q ss_pred EEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhhhh----c--eeecCCCCCCchHHHHHHHHcCCch-hhhcCcc---
Q 004463 262 IKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKA----G--LYLPAKNHPRLPWFDLILADIGDHQ-SLEQNLS--- 330 (752)
Q Consensus 262 l~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~aq~----G--~~vP~~~~~~l~~~d~i~~~ig~~~-~i~~~~s--- 330 (752)
..+++| ++++|+||||+|||||++++ +++..-... | +|+-.........+..++..++... .+..++.
T Consensus 126 ggi~~G-~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~ 204 (349)
T 1pzn_A 126 GGIETQ-AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVAR 204 (349)
T ss_dssp SSEESS-EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEE
T ss_pred CCCCCC-eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEe
Confidence 457889 99999999999999999999 443211111 2 4554443211122333444444321 1111111
Q ss_pred cc-hHHHH-HHHHHHHcc-------CCCcEEEEeCCCCCCChHh------------HHHHHHHHHHHHhcCCcEEEEEec
Q 004463 331 TF-SGHIS-RIVDILELV-------SRESLVLIDEIGSGTDPSE------------GVALATSILQYLRDRVGLAVVTTH 389 (752)
Q Consensus 331 tl-Sgg~k-rl~~i~~la-------~~~~LlLLDEp~~glD~~~------------~~~L~~all~~l~~~~~tviitTH 389 (752)
.+ |.++. .+..+..++ .+|++||+|||++++|+.. ...+...+.....+.++++|+++|
T Consensus 205 ~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h 284 (349)
T 1pzn_A 205 AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQ 284 (349)
T ss_dssp CCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcc
Confidence 12 45555 566665555 6899999999999999852 233444344444556899999999
Q ss_pred chh
Q 004463 390 YAD 392 (752)
Q Consensus 390 ~~~ 392 (752)
...
T Consensus 285 ~~~ 287 (349)
T 1pzn_A 285 VQA 287 (349)
T ss_dssp CC-
T ss_pred ccc
Confidence 865
No 111
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.10 E-value=3.1e-13 Score=135.65 Aligned_cols=123 Identities=15% Similarity=0.081 Sum_probs=86.4
Q ss_pred ccCceEEEEEcCCCCCHHHHHHHH-HhhhhhhhhceeecCCCC----CCch------------------HHHHHHHHcCC
Q 004463 265 ECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNH----PRLP------------------WFDLILADIGD 321 (752)
Q Consensus 265 ~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~aq~G~~vP~~~~----~~l~------------------~~d~i~~~ig~ 321 (752)
.+| .+++|+||||||||||++++ |++.. ++ .+++++.. ..++ .+..++..++.
T Consensus 4 ~~~-~~i~i~G~~GsGKSTl~~~l~~~~~~--~i-~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (211)
T 3asz_A 4 PKP-FVIGIAGGTASGKTTLAQALARTLGE--RV-ALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLR 79 (211)
T ss_dssp -CC-EEEEEEESTTSSHHHHHHHHHHHHGG--GE-EEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHT
T ss_pred CCc-EEEEEECCCCCCHHHHHHHHHHHhCC--Ce-EEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHc
Confidence 467 89999999999999999999 65432 11 23343321 1111 13344555566
Q ss_pred chhhhcCcccchHHHH-----HHHHHHHccCCCcEEEEeCCCCC-------CChHhHHHHHHHHHHHHhcCCcEEEEEec
Q 004463 322 HQSLEQNLSTFSGHIS-----RIVDILELVSRESLVLIDEIGSG-------TDPSEGVALATSILQYLRDRVGLAVVTTH 389 (752)
Q Consensus 322 ~~~i~~~~stlSgg~k-----rl~~i~~la~~~~LlLLDEp~~g-------lD~~~~~~L~~all~~l~~~~~tviitTH 389 (752)
.+.+..+...+|+|++ ++..+..++.+|.++++|||+++ +|+.....+...+.+...++|.++++++|
T Consensus 80 ~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~ 159 (211)
T 3asz_A 80 GLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVA 159 (211)
T ss_dssp TCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred CCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 6667778888998864 34445567778888888999999 89988888888666666667888888898
Q ss_pred ch
Q 004463 390 YA 391 (752)
Q Consensus 390 ~~ 391 (752)
+.
T Consensus 160 ~~ 161 (211)
T 3asz_A 160 QY 161 (211)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 112
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.07 E-value=8.7e-12 Score=124.38 Aligned_cols=129 Identities=14% Similarity=0.057 Sum_probs=72.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH-Hhhhhhhhhce------------------eecCCCCCCchHHHHHHHHcCC--c-----
Q 004463 269 RVVVITGPNTGGKTASMKTL-GLASLMSKAGL------------------YLPAKNHPRLPWFDLILADIGD--H----- 322 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i-Gli~~~aq~G~------------------~vP~~~~~~l~~~d~i~~~ig~--~----- 322 (752)
++++|+||||+|||||++++ |++. - .|. ++++....... .++.++. .
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~-~--~Gi~~~g~~~~~~~~~~~~ig~~~~~~~g~~~----~l~~~~~~~~~~~~~ 74 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK-S--SGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRG----PLSRVGLEPPPGKRE 74 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH-H--TTCCCEEEECCEEETTSSEEEEEEEETTSCEE----EEEECCCCCCSSSCC
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc-c--CCEEEcCEecchhHhhhceEEEEEEeccccee----hhhcccccCCccccc
Confidence 67999999999999999999 5553 1 120 11111000000 0011110 0
Q ss_pred hhhhcCcccchHHHH-HHHHHH----HccCCCcEEEEeC--CCCCCChHhHHHHHHHHHHHHhcCCcEEE---EEecchh
Q 004463 323 QSLEQNLSTFSGHIS-RIVDIL----ELVSRESLVLIDE--IGSGTDPSEGVALATSILQYLRDRVGLAV---VTTHYAD 392 (752)
Q Consensus 323 ~~i~~~~stlSgg~k-rl~~i~----~la~~~~LlLLDE--p~~glD~~~~~~L~~all~~l~~~~~tvi---itTH~~~ 392 (752)
..+.+....+|++++ .+..+. +++.+|++||||| |+..+|+....+|.. .+.....++| .+||+..
T Consensus 75 ~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~----~l~~~~~~ilgti~vsh~~~ 150 (189)
T 2i3b_A 75 CRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQ----TLSTPGTIILGTIPVPKGKP 150 (189)
T ss_dssp EESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHH----HHHCSSCCEEEECCCCCSSC
T ss_pred cccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHH----HHhCCCcEEEEEeecCCCCc
Confidence 123445567898888 453432 3688999999999 788888865444433 3333333342 3348864
Q ss_pred HHhhhcccccccCCcee
Q 004463 393 LSCLKDKDTRFENAATE 409 (752)
Q Consensus 393 l~~~a~~~~~i~~g~v~ 409 (752)
..+++++..+.++.+.
T Consensus 151 -~~~vd~i~~~~~~~i~ 166 (189)
T 2i3b_A 151 -LALVEEIRNRKDVKVF 166 (189)
T ss_dssp -CTTHHHHHTTCCSEEE
T ss_pred -hHHHHHHeecCCcEEE
Confidence 2355555555555553
No 113
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.06 E-value=5.5e-10 Score=113.69 Aligned_cols=128 Identities=15% Similarity=0.184 Sum_probs=71.1
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHHhhhhh-------hhhceeecCCCCCCchHHHHHHHHcCCch-hhhcCc---ccc
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLGLASLM-------SKAGLYLPAKNHPRLPWFDLILADIGDHQ-SLEQNL---STF 332 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~-------aq~G~~vP~~~~~~l~~~d~i~~~ig~~~-~i~~~~---stl 332 (752)
+++| ++++|+||||+|||||++++.....+ ..-.+|+.........-+..++..++... .+..++ ..+
T Consensus 21 i~~G-~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 21 IETG-SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp EETT-SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCC-eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 5678 89999999999999999999332222 11123443332112222344555566431 111111 234
Q ss_pred hHHHH-H-HHHHHHc--cCCCcEEEEeCCCCCCChH-------h-----HHHHHHHHHHHHhcCCcEEEEEecchh
Q 004463 333 SGHIS-R-IVDILEL--VSRESLVLIDEIGSGTDPS-------E-----GVALATSILQYLRDRVGLAVVTTHYAD 392 (752)
Q Consensus 333 Sgg~k-r-l~~i~~l--a~~~~LlLLDEp~~glD~~-------~-----~~~L~~all~~l~~~~~tviitTH~~~ 392 (752)
+..+. + +..+... ..+|++|+||||++.+|+. . ...+...+.....+.+++||+++|...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~ 175 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 175 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee
Confidence 44433 2 2223222 3689999999999999985 2 234444455555556899999999754
No 114
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.04 E-value=4.2e-10 Score=107.71 Aligned_cols=88 Identities=16% Similarity=0.246 Sum_probs=59.6
Q ss_pred cCceEEEEEcCCCCCHHHHHHHH-HhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHHHHHHHHH
Q 004463 266 CETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILE 344 (752)
Q Consensus 266 ~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~krl~~i~~ 344 (752)
+| +.++|+||||+|||||++++ +.+........+++....... .
T Consensus 35 ~g-~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~----------------------------------~ 79 (149)
T 2kjq_A 35 HG-QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT----------------------------------D 79 (149)
T ss_dssp CC-SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC----------------------------------G
T ss_pred CC-CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH----------------------------------H
Confidence 67 79999999999999999999 333221111123333221100 2
Q ss_pred ccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcE-EEEEecc
Q 004463 345 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGL-AVVTTHY 390 (752)
Q Consensus 345 la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~t-viitTH~ 390 (752)
++.++++|+||||++ +++.....|.. +++.+.+.|.+ +|++||.
T Consensus 80 ~~~~~~lLilDE~~~-~~~~~~~~l~~-li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 80 AAFEAEYLAVDQVEK-LGNEEQALLFS-IFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGGCSEEEEESTTC-CCSHHHHHHHH-HHHHHHHHTCCEEEEEESS
T ss_pred HHhCCCEEEEeCccc-cChHHHHHHHH-HHHHHHHcCCcEEEEECCC
Confidence 345799999999998 55555666666 77777777777 8889986
No 115
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.01 E-value=3.3e-11 Score=128.73 Aligned_cols=128 Identities=15% Similarity=0.121 Sum_probs=60.5
Q ss_pred cccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hh-hhhhh---------------hhceeecCCCCC
Q 004463 247 GSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GL-ASLMS---------------KAGLYLPAKNHP 307 (752)
Q Consensus 247 ~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gl-i~~~a---------------q~G~~vP~~~~~ 307 (752)
.||++.|+++.+ +++|.+ +|+||||+||||||+++ |+ +.+-. ..-.++++....
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I-------~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~ 74 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL-------MVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGV 74 (301)
T ss_dssp ----------------CEEE-------EEEEETTSSHHHHHHHHHC------------------------CEEEEC---C
T ss_pred CCCcceECCEEEEcCCCEEE-------EEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCc
Confidence 478889988766 677765 99999999999999997 43 22110 000112221100
Q ss_pred --CchHHHH---------------HHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCC-CChHhHHH
Q 004463 308 --RLPWFDL---------------ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG-TDPSEGVA 368 (752)
Q Consensus 308 --~l~~~d~---------------i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~g-lD~~~~~~ 368 (752)
.+.++|. +... +.+..+..+..+|+|++ ++..++++ -+|++|||+++ +|+...
T Consensus 75 ~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~~~~~~~~~sgg~rqrv~~ara~----~ll~ldePt~~~Ld~~~~-- 146 (301)
T 2qnr_A 75 KLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQFERYLHDESGLNRRHIIDNRVH----CCFYFISPFGHGLKPLDV-- 146 (301)
T ss_dssp CEEEEEEEEC-----------CTTHHHH--HHHHHHHHHHHHTSSCCTTCCCCCCC----EEEEEECSSSSSCCHHHH--
T ss_pred ccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHHHHHHHHHhCHHhhhhhhhhhhh----heeeeecCcccCCCHHHH--
Confidence 0111000 0000 01112255566677766 33322222 29999999985 999873
Q ss_pred HHHHHHHHHhcC-CcEEEEEecchh
Q 004463 369 LATSILQYLRDR-VGLAVVTTHYAD 392 (752)
Q Consensus 369 L~~all~~l~~~-~~tviitTH~~~ 392 (752)
.++..+... +.++|+++||+.
T Consensus 147 ---~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 147 ---AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp ---HHHHHHTTTSCEEEEECCGGGS
T ss_pred ---HHHHHHHhcCCEEEEEEeCCCC
Confidence 244455543 678899999963
No 116
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.98 E-value=1.1e-10 Score=129.97 Aligned_cols=130 Identities=13% Similarity=0.100 Sum_probs=70.1
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCC--CC---------
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH--PR--------- 308 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~--~~--------- 308 (752)
+++.++||++.|++..+ +++|.+ +|+||||+||||||+++ +|...|..+. ..
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~I-------~lvG~sGaGKSTLln~L--------~g~~~~~~~~~~~~~~~~~t~~~ 74 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFTL-------MVVGESGLGKSTLINSL--------FLTDLYSPEYPGPSHRIKKTVQV 74 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEEE-------EEECCTTSSHHHHHHHH--------TTCCCCCCCCCSCC-----CCEE
T ss_pred CcEEEEecceeECCEEEecCCCEEE-------EEECCCCCcHHHHHHHH--------hCCCCCCCCCCCcccCCccceee
Confidence 46889999999988766 777765 99999999999999999 4433321110 00
Q ss_pred --chH-H--HHHH------HHcCCchhhh-----cC-----cccchHHHH-HHHHHHHccCCCc---EEEEeCCC-CCCC
Q 004463 309 --LPW-F--DLIL------ADIGDHQSLE-----QN-----LSTFSGHIS-RIVDILELVSRES---LVLIDEIG-SGTD 362 (752)
Q Consensus 309 --l~~-~--d~i~------~~ig~~~~i~-----~~-----~stlSgg~k-rl~~i~~la~~~~---LlLLDEp~-~glD 362 (752)
+++ + ..++ ..+|...... .. -..|+.+++ ++.++++++.+|. +|++|||| .++|
T Consensus 75 ~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~ 154 (418)
T 2qag_C 75 EQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLK 154 (418)
T ss_dssp EEEECC------CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCC
T ss_pred eeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCC
Confidence 000 0 0000 0001100000 00 012333333 4455677888999 99999999 6999
Q ss_pred hHhHHHHHHHHHHHHhcCCcEEEEEecchh
Q 004463 363 PSEGVALATSILQYLRDRVGLAVVTTHYAD 392 (752)
Q Consensus 363 ~~~~~~L~~all~~l~~~~~tviitTH~~~ 392 (752)
+.+. .+++.+.. +..+|++.|-.+
T Consensus 155 ~~d~-----~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 155 PLDI-----EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp HHHH-----HHHHHHTT-TSEEEEEEESTT
T ss_pred HHHH-----HHHHHHhc-cCcEEEEEEccc
Confidence 9873 24445554 566666666554
No 117
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.95 E-value=2.1e-10 Score=114.06 Aligned_cols=134 Identities=13% Similarity=0.020 Sum_probs=77.4
Q ss_pred eEEEcccccccCCeeEeeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhh-----hhhh-h---h-------ceeecCCC
Q 004463 243 EMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLA-----SLMS-K---A-------GLYLPAKN 305 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli-----~~~a-q---~-------G~~vP~~~ 305 (752)
|++++||++.|+. .+-.+|.+.+| ..++|+||||+|||||++.+ |.. .... . . +..+-...
T Consensus 3 ~l~~~~~~~~~~~-~~l~~~~~~~~-~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~ 80 (210)
T 1pui_A 3 NLNYQQTHFVMSA-PDIRHLPSDTG-IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLP 80 (210)
T ss_dssp --------CEEEE-SSGGGSSCSCS-EEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECC
T ss_pred chhhhhhhheeec-CCHhHCCCCCC-cEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECc
Confidence 4778999999974 34223788888 89999999999999999998 433 1000 0 0 01010000
Q ss_pred CCC--------chHHH----------------------------------HHHHHcCCchh-hhcCcccchHHHH-H-HH
Q 004463 306 HPR--------LPWFD----------------------------------LILADIGDHQS-LEQNLSTFSGHIS-R-IV 340 (752)
Q Consensus 306 ~~~--------l~~~d----------------------------------~i~~~ig~~~~-i~~~~stlSgg~k-r-l~ 340 (752)
... ...+. .++...+.... +..+...+|++++ + +.
T Consensus 81 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~ 160 (210)
T 1pui_A 81 GYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLN 160 (210)
T ss_dssp CCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHH
T ss_pred CCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHH
Confidence 000 00000 11112222211 2455667899987 4 56
Q ss_pred HHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHh
Q 004463 341 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR 378 (752)
Q Consensus 341 ~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~ 378 (752)
.+++++.+|.++++|||++++|+.....+...+.+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 161 MVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 77777888888899999999999999999986666543
No 118
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.92 E-value=1.8e-09 Score=106.18 Aligned_cols=76 Identities=16% Similarity=0.113 Sum_probs=62.8
Q ss_pred hcCcccchHHHH-HHHHHHHcc----CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccc
Q 004463 326 EQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKD 400 (752)
Q Consensus 326 ~~~~stlSgg~k-rl~~i~~la----~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~ 400 (752)
.+.++.|||||+ +++++++++ .+|+++|||||++|||+.....+.. ++..+.. +.++|++||+..+..+|+++
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~-~l~~~~~-~~~~ivith~~~~~~~ad~i 136 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVAD-LIKESSK-ESQFIVITLRDVMMANADKI 136 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH-HHHHHTT-TSEEEEECSCHHHHTTCSEE
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHH-HHHHhcc-CCEEEEEEecHHHHHhCCEE
Confidence 456788999999 788888875 5679999999999999999999998 5555554 46899999998877888888
Q ss_pred ccc
Q 004463 401 TRF 403 (752)
Q Consensus 401 ~~i 403 (752)
+.+
T Consensus 137 ~~v 139 (173)
T 3kta_B 137 IGV 139 (173)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 119
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.91 E-value=1.3e-10 Score=135.52 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=37.7
Q ss_pred cCCCcEEEEeCC------CCCCChHhHHHHHHHHHHHHhcC-CcEEEEEecchhH
Q 004463 346 VSRESLVLIDEI------GSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADL 393 (752)
Q Consensus 346 a~~~~LlLLDEp------~~glD~~~~~~L~~all~~l~~~-~~tviitTH~~~l 393 (752)
...|+|+|+||| |+|+|+.....+...+.+++.+. +.+++++||+.++
T Consensus 144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~ 198 (608)
T 3szr_A 144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDI 198 (608)
T ss_dssp SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCT
T ss_pred CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchh
Confidence 356999999999 99999999988888565655543 5678899999763
No 120
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.90 E-value=1.5e-09 Score=120.84 Aligned_cols=144 Identities=15% Similarity=0.126 Sum_probs=85.2
Q ss_pred EEcccccccCCeeE-eeeEEEccCceE--EEEEcCCCCCHHHHHHHH-Hhhhh---hh--------hhceeecCCCCC--
Q 004463 245 TVGSLSKGISDFPV-PIDIKVECETRV--VVITGPNTGGKTASMKTL-GLASL---MS--------KAGLYLPAKNHP-- 307 (752)
Q Consensus 245 ~~~~ls~~y~~~~v-~idl~l~~g~~~--~~I~GpNGsGKSTlLK~i-Gli~~---~a--------q~G~~vP~~~~~-- 307 (752)
++.+ +++|++.++ +++|++.+| .+ ++|+||||+||||||++| |+... .. ....++|+....
T Consensus 18 ~~~~-~~~y~~~~L~~vsl~i~~G-ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~ 95 (427)
T 2qag_B 18 PLAG-HVGFDSLPDQLVNKSVSQG-FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRL 95 (427)
T ss_dssp CCCC-CC-CC--CHHHHHHSCC-C-CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEE
T ss_pred EEee-EEEECCeecCCCceEecCC-CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCcccc
Confidence 3455 778876556 889999999 89 999999999999999999 55210 00 111234443210
Q ss_pred ------------Cch--------------HHHHHHHHc-CCchh----hhcC----cc---cchHHHH--HHHHHHHccC
Q 004463 308 ------------RLP--------------WFDLILADI-GDHQS----LEQN----LS---TFSGHIS--RIVDILELVS 347 (752)
Q Consensus 308 ------------~l~--------------~~d~i~~~i-g~~~~----i~~~----~s---tlSgg~k--rl~~i~~la~ 347 (752)
.+. -++.++... +.... .+.. +. ..+.+.. .+.++..+..
T Consensus 96 ~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~~ 175 (427)
T 2qag_B 96 KLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDS 175 (427)
T ss_dssp EEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTCS
T ss_pred ccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 000 011222222 22111 0111 10 0011222 3566667778
Q ss_pred CCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 004463 348 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 390 (752)
Q Consensus 348 ~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~ 390 (752)
..++|++|+|+..+.+.+...+...+.+.+...|..|+++|.+
T Consensus 176 ~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 176 KVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 8999999999999999999999887777788888888888865
No 121
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.88 E-value=1.4e-10 Score=126.95 Aligned_cols=143 Identities=10% Similarity=-0.030 Sum_probs=78.6
Q ss_pred eeeEEEcc--CceEEEEEcCCCCCHHHHHHHH-Hhhhhhh--hhce-eecC--CC-CCC--chHHHHHH---------H-
Q 004463 259 PIDIKVEC--ETRVVVITGPNTGGKTASMKTL-GLASLMS--KAGL-YLPA--KN-HPR--LPWFDLIL---------A- 317 (752)
Q Consensus 259 ~idl~l~~--g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a--q~G~-~vP~--~~-~~~--l~~~d~i~---------~- 317 (752)
.+++.+.+ + +.++|+||||||||||+|+| |++.+.. ..|. ++.. .+ ... ..-+.++. .
T Consensus 160 ~v~~~v~~~lg-~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~~~ 238 (365)
T 1lw7_A 160 FIPKEARPFFA-KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDYAV 238 (365)
T ss_dssp GSCTTTGGGTC-EEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHhhh-CeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHHH
Confidence 35566777 8 89999999999999999999 5544321 0010 1100 00 000 00011110 0
Q ss_pred Hc------CCchhhhcCcccchHHHH-HHHHHHH-ccCCCcEEEEeC---CC------CCCChHhHHHHHHHHHHHHhcC
Q 004463 318 DI------GDHQSLEQNLSTFSGHIS-RIVDILE-LVSRESLVLIDE---IG------SGTDPSEGVALATSILQYLRDR 380 (752)
Q Consensus 318 ~i------g~~~~i~~~~stlSgg~k-rl~~i~~-la~~~~LlLLDE---p~------~glD~~~~~~L~~all~~l~~~ 380 (752)
.+ ++.+.....+..+|++.+ +..+... ...+|+++|||| |+ .++|+..+..++.++.+.+.+.
T Consensus 239 t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~ 318 (365)
T 1lw7_A 239 RHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKY 318 (365)
T ss_dssp HHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGG
T ss_pred hccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHc
Confidence 00 011111222233444444 3333322 346899999999 65 5889999999999777666666
Q ss_pred CcEEEEEecchhHHhhhccccc
Q 004463 381 VGLAVVTTHYADLSCLKDKDTR 402 (752)
Q Consensus 381 ~~tviitTH~~~l~~~a~~~~~ 402 (752)
+.++|++||......+++....
T Consensus 319 ~~~ililde~~~~~r~~~~i~~ 340 (365)
T 1lw7_A 319 KVPYIEIESPSYLDRYNQVKAV 340 (365)
T ss_dssp GCCCEEEECSSHHHHHHHHHHH
T ss_pred CCCEEEeCCCCHHHHHHHHHHH
Confidence 7899999987555556555443
No 122
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.88 E-value=1e-09 Score=125.69 Aligned_cols=79 Identities=25% Similarity=0.314 Sum_probs=69.5
Q ss_pred hcCcccc-hHHHH-HHHHHHHccCCC--cEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccc
Q 004463 326 EQNLSTF-SGHIS-RIVDILELVSRE--SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDT 401 (752)
Q Consensus 326 ~~~~stl-Sgg~k-rl~~i~~la~~~--~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~ 401 (752)
.++++.| |||++ |++++++++.+| ++|||||||+|+|+.....+.. ++..+.+ +.+||++||++++..+|++++
T Consensus 391 ~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~-~l~~~~~-~~~vi~itH~~~~~~~~d~~~ 468 (517)
T 4ad8_A 391 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAE-QLSRLAD-TRQVLVVTHLAQIAARAHHHY 468 (517)
T ss_dssp CCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHH-HHHHHHH-HSEEEEECCCHHHHHHSSEEE
T ss_pred cccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHH-HHHHHhC-CCEEEEEecCHHHHHhCCEEE
Confidence 3667888 99999 899999999999 9999999999999999999998 5555666 789999999999888899998
Q ss_pred cccCC
Q 004463 402 RFENA 406 (752)
Q Consensus 402 ~i~~g 406 (752)
.+.++
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 88654
No 123
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.86 E-value=1.5e-09 Score=119.34 Aligned_cols=121 Identities=12% Similarity=0.142 Sum_probs=71.6
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHH-HhhhhhhhhceeecCCCCCCchHHHHHHHHcC-Cch-hhhcCcccchHHHHHHH
Q 004463 264 VECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIG-DHQ-SLEQNLSTFSGHISRIV 340 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig-~~~-~i~~~~stlSgg~krl~ 340 (752)
+.+| .+++|+|||||||||||+++ |++.... .|-.+-.+....+. +. ..++ ..+ .+.....+|+ ..
T Consensus 133 ~~~g-~~i~ivG~~GsGKTTll~~l~~~~~~~~-~g~I~~~e~~~e~~-~~---~~~~~v~Q~~~g~~~~~~~-----~~ 201 (372)
T 2ewv_A 133 HRKM-GLILVTGPTGSGKSTTIASMIDYINQTK-SYHIITIEDPIEYV-FK---HKKSIVNQREVGEDTKSFA-----DA 201 (372)
T ss_dssp TSSS-EEEEEECSSSSSHHHHHHHHHHHHHHHS-CCEEEEEESSCCSC-CC---CSSSEEEEEEBTTTBSCSH-----HH
T ss_pred hcCC-CEEEEECCCCCCHHHHHHHHHhhcCcCC-CcEEEEecccHhhh-hc---cCceEEEeeecCCCHHHHH-----HH
Confidence 5778 89999999999999999999 4443320 12111111001110 00 0000 000 0111335564 35
Q ss_pred HHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccc
Q 004463 341 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF 403 (752)
Q Consensus 341 ~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i 403 (752)
+..++..+|++||+|||+ |+..... +++.. ..|.++++|+|+.+....+++.+.+
T Consensus 202 l~~~L~~~pd~illdE~~---d~e~~~~----~l~~~-~~g~~vi~t~H~~~~~~~~~rl~~l 256 (372)
T 2ewv_A 202 LRAALREDPDVIFVGEMR---DLETVET----ALRAA-ETGHLVFGTLHTNTAIDTIHRIVDI 256 (372)
T ss_dssp HHHHTTSCCSEEEESCCC---SHHHHHH----HHHHH-TTTCEEEECCCCCSHHHHHHHHHHT
T ss_pred HHHHhhhCcCEEEECCCC---CHHHHHH----HHHHH-hcCCEEEEEECcchHHHHHHHHHHh
Confidence 556677899999999999 7655332 23333 4588999999998877777776554
No 124
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.80 E-value=1.3e-09 Score=116.60 Aligned_cols=119 Identities=14% Similarity=0.101 Sum_probs=67.1
Q ss_pred cCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh------------------------hhc-eeecCCCCCC--chHHHHHHH
Q 004463 266 CETRVVVITGPNTGGKTASMKTL-GLASLMS------------------------KAG-LYLPAKNHPR--LPWFDLILA 317 (752)
Q Consensus 266 ~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a------------------------q~G-~~vP~~~~~~--l~~~d~i~~ 317 (752)
+| ++++|+|||||||||+++.+ |++.... +.+ .++++..... ...++.+..
T Consensus 101 ~g-~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KG-RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SS-SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CC-eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 46 89999999999999999999 5554310 111 2445543111 122343321
Q ss_pred -H-----------cCCchhhhcCcccchHHHHHHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEE
Q 004463 318 -D-----------IGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAV 385 (752)
Q Consensus 318 -~-----------ig~~~~i~~~~stlSgg~krl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tvi 385 (752)
. .|..+.....++.|| .+|.+++++++..|..++| .+|+..+..+...+..+....+.++|
T Consensus 180 ~~~~~~d~~llDt~G~~~~~~~~~~eLs--~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~i 252 (304)
T 1rj9_A 180 MKARGYDLLFVDTAGRLHTKHNLMEELK--KVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGV 252 (304)
T ss_dssp HHHHTCSEEEECCCCCCTTCHHHHHHHH--HHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEE
T ss_pred HHhCCCCEEEecCCCCCCchHHHHHHHH--HHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEE
Confidence 0 111122222334444 2377888999999994444 44444444444433333233488999
Q ss_pred EEecchh
Q 004463 386 VTTHYAD 392 (752)
Q Consensus 386 itTH~~~ 392 (752)
++||+..
T Consensus 253 ivTh~d~ 259 (304)
T 1rj9_A 253 IVTKLDG 259 (304)
T ss_dssp EEECTTS
T ss_pred EEECCcc
Confidence 9999854
No 125
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.76 E-value=2.3e-08 Score=110.80 Aligned_cols=127 Identities=17% Similarity=0.145 Sum_probs=71.8
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHHhhhhhh-------hhceeecCCCCCCchHHHHHHHHcCCch-hhhcCc---ccc
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLGLASLMS-------KAGLYLPAKNHPRLPWFDLILADIGDHQ-SLEQNL---STF 332 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~a-------q~G~~vP~~~~~~l~~~d~i~~~ig~~~-~i~~~~---stl 332 (752)
|++| ++++|+||||+|||||++++.+...+. ...+|+-.+.......+..+...+|... .+..++ ..+
T Consensus 175 I~~G-ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 175 VETG-SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp EETT-SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred cCCC-cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 4678 899999999999999999774332221 1123444443222222444566677532 111111 122
Q ss_pred hHHH-H-HHHHHHH--ccCCCcEEEEeCCCCCCChHhH------------HHHHHHHHHHHhcCCcEEEEEecch
Q 004463 333 SGHI-S-RIVDILE--LVSRESLVLIDEIGSGTDPSEG------------VALATSILQYLRDRVGLAVVTTHYA 391 (752)
Q Consensus 333 Sgg~-k-rl~~i~~--la~~~~LlLLDEp~~glD~~~~------------~~L~~all~~l~~~~~tviitTH~~ 391 (752)
+... . .+..+.. ...+|.+|++|||++.+|+... ..++..+.+...+.+.+||++||..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~ 328 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVV 328 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 3322 2 2222222 2357999999999999987432 3445534444445689999999983
No 126
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.75 E-value=6.2e-09 Score=106.05 Aligned_cols=118 Identities=11% Similarity=0.093 Sum_probs=61.8
Q ss_pred EEEccCceEEEEEcCCCCCHHHHHHHH-Hhhhhhhhhce-ee----cCCCC-CCc-------hHHHHHHHHcCCchhhhc
Q 004463 262 IKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGL-YL----PAKNH-PRL-------PWFDLILADIGDHQSLEQ 327 (752)
Q Consensus 262 l~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~aq~G~-~v----P~~~~-~~l-------~~~d~i~~~ig~~~~i~~ 327 (752)
-.+++| ++++|+||||||||||+|++ |+..+-.-.|. .+ |..+. ..+ ..|......-...+.+.-
T Consensus 11 ~~~~~G-~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 11 HHMAQG-TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp ----CC-CEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCCC-cEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 356788 99999999999999999999 65542000110 00 10000 001 112222110000111110
Q ss_pred CcccchHHHHHHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH
Q 004463 328 NLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL 393 (752)
Q Consensus 328 ~~stlSgg~krl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l 393 (752)
. ..+.|--+ ..+...+..+.+|||| +|+.....+...+. .+.+|+++||+.+.
T Consensus 90 ~-~~~yg~~~--~~v~~~l~~G~illLD-----LD~~~~~~i~~~l~-----~~~tI~i~th~~~~ 142 (219)
T 1s96_A 90 F-GNYYGTSR--EAIEQVLATGVDVFLD-----IDWQGAQQIRQKMP-----HARSIFILPPSKIE 142 (219)
T ss_dssp T-TEEEEEEH--HHHHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-----TCEEEEEECSSHHH
T ss_pred H-hccCCCCH--HHHHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-----CCEEEEEECCCHHH
Confidence 0 01111001 1233344568999999 99999888776332 47899999999773
No 127
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.69 E-value=2.7e-08 Score=107.30 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=33.7
Q ss_pred cCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh
Q 004463 346 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 392 (752)
Q Consensus 346 a~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~ 392 (752)
..+|.+||||||++ +|+....+|.. +++... .+.++|++||+.+
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~-~le~~~-~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRR-TMEKYS-KNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHH-HHHHST-TTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHH-HHHhhc-CCCEEEEEeCCHH
Confidence 55889999999999 99988887776 444432 3678999999865
No 128
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.69 E-value=2.2e-08 Score=111.75 Aligned_cols=78 Identities=13% Similarity=0.072 Sum_probs=65.8
Q ss_pred hcCcccchHHHH-HHHHHHHcc----CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhccc
Q 004463 326 EQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKD 400 (752)
Q Consensus 326 ~~~~stlSgg~k-rl~~i~~la----~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~ 400 (752)
.+.++.|||||+ +++++++++ .+|+++|||||+++||+.....++. ++..+...+.++|++||+..+...|+++
T Consensus 328 ~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~-~l~~~~~~~~~~ii~th~~~~~~~~d~~ 406 (430)
T 1w1w_A 328 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAA-YIRRHRNPDLQFIVISLKNTMFEKSDAL 406 (430)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHH-HHHHHCBTTBEEEEECSCHHHHTTCSEE
T ss_pred ccccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHH-HHHHHhcCCCEEEEEECCHHHHHhCCEE
Confidence 466789999999 788888887 6899999999999999999999988 5555655578999999998877788888
Q ss_pred cccc
Q 004463 401 TRFE 404 (752)
Q Consensus 401 ~~i~ 404 (752)
+.+.
T Consensus 407 ~~~~ 410 (430)
T 1w1w_A 407 VGVY 410 (430)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7664
No 129
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.68 E-value=1.2e-09 Score=105.83 Aligned_cols=55 Identities=13% Similarity=0.054 Sum_probs=46.2
Q ss_pred EcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCch
Q 004463 246 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP 310 (752)
Q Consensus 246 ~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~ 310 (752)
..++++.|++..+ ++||++.+| ++++|+||||||||||+|++ +|.. |.+|.+.++
T Consensus 10 ~~~~~~~~g~~~~l~~vsl~i~~G-e~v~L~G~nGaGKTTLlr~l--------~g~l-~~~G~V~~~ 66 (158)
T 1htw_A 10 DEFSMLRFGKKFAEILLKLHTEKA-IMVYLNGDLGAGKTTLTRGM--------LQGI-GHQGNVKSP 66 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSSC-EEEEEECSTTSSHHHHHHHH--------HHHT-TCCSCCCCC
T ss_pred CHHHHHHHHHHHHHhccccccCCC-CEEEEECCCCCCHHHHHHHH--------HHhC-CCCCeEEEC
Confidence 4578888876655 889999999 99999999999999999999 8877 877755544
No 130
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.65 E-value=3e-08 Score=108.61 Aligned_cols=76 Identities=16% Similarity=0.203 Sum_probs=61.4
Q ss_pred cCcccchHHHH-HHHH------HHHccCC-CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhc
Q 004463 327 QNLSTFSGHIS-RIVD------ILELVSR-ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKD 398 (752)
Q Consensus 327 ~~~stlSgg~k-rl~~------i~~la~~-~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~ 398 (752)
.+++.|||||+ ++++ +++++.+ |+++|||||++|+|+.....+...+ ..+.. +.+||+|||+.++..+|+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l-~~~~~-~~~vi~~th~~~~~~~~d 353 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIF-RKVKS-IPQMIIITHHRELEDVAD 353 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHH-HHCCS-CSEEEEEESCGGGGGGCS
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHH-HHhcc-CCeEEEEEChHHHHhhCC
Confidence 56789999999 6643 4556788 9999999999999999999998844 44433 468999999988878888
Q ss_pred cccccc
Q 004463 399 KDTRFE 404 (752)
Q Consensus 399 ~~~~i~ 404 (752)
+++.+.
T Consensus 354 ~~~~l~ 359 (371)
T 3auy_A 354 VIINVK 359 (371)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 887765
No 131
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.60 E-value=2.9e-07 Score=97.92 Aligned_cols=134 Identities=13% Similarity=0.198 Sum_probs=75.6
Q ss_pred cCceEEEEEcCCCCCHHHHHHHH-Hhhhh-hhhhceeecCCCCCCchHHHHHHH---HcCCchhhhcCcccchHHHHHHH
Q 004463 266 CETRVVVITGPNTGGKTASMKTL-GLASL-MSKAGLYLPAKNHPRLPWFDLILA---DIGDHQSLEQNLSTFSGHISRIV 340 (752)
Q Consensus 266 ~g~~~~~I~GpNGsGKSTlLK~i-Gli~~-~aq~G~~vP~~~~~~l~~~d~i~~---~ig~~~~i~~~~stlSgg~krl~ 340 (752)
+| ++++|+||||+||||+++.+ +.+.. .++.-.++.++. ......+++-. .+|..... ..+... +.
T Consensus 104 ~g-~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~-~r~~a~eqL~~~~~~~gl~~~~-----~~~~~~--l~ 174 (296)
T 2px0_A 104 HS-KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT-YRIAAVEQLKTYAELLQAPLEV-----CYTKEE--FQ 174 (296)
T ss_dssp CS-SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC-SSTTHHHHHHHHHTTTTCCCCB-----CSSHHH--HH
T ss_pred CC-cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc-ccchHHHHHHHHHHhcCCCeEe-----cCCHHH--HH
Confidence 46 79999999999999999999 34333 222234555554 23333443322 22321110 122222 23
Q ss_pred HHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc--C-CcEEEE-Eecchh-HHhhhcccccccCCceeec
Q 004463 341 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD--R-VGLAVV-TTHYAD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 341 ~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~--~-~~tvii-tTH~~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
.+++.+.++++||+| |+|+|+.....+.. +...+.. . +.++++ +||... +..+++....+..+.+.++
T Consensus 175 ~al~~~~~~dlvIiD--T~G~~~~~~~~~~e-l~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 175 QAKELFSEYDHVFVD--TAGRNFKDPQYIDE-LKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp HHHHHGGGSSEEEEE--CCCCCTTSHHHHHH-HHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred HHHHHhcCCCEEEEe--CCCCChhhHHHHHH-HHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 333345889999999 88999876654443 4443331 1 223444 488854 6667776655555555553
No 132
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.55 E-value=4.1e-07 Score=92.33 Aligned_cols=136 Identities=13% Similarity=0.136 Sum_probs=75.2
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHH-hhhhhhhhceeecCCCCCCchHHHHHHHHcCCc-hhh---------h---cCc
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLG-LASLMSKAGLYLPAKNHPRLPWFDLILADIGDH-QSL---------E---QNL 329 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iG-li~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~-~~i---------~---~~~ 329 (752)
+++| ++++|+||||+|||||+..+. .........+|+..+.. ..-+...+..+|.. +.. + ...
T Consensus 20 l~~G-~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~--~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~ 96 (247)
T 2dr3_A 20 IPER-NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH--PVQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAGI 96 (247)
T ss_dssp EETT-CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC--HHHHHHHHHTTTCCCHHHHHHTSEEEEECSTTTT
T ss_pred CCCC-cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC--HHHHHHHHHHcCCCHHHHhhCCcEEEEecchhhc
Confidence 5678 899999999999999976662 22222222344444331 11111112223321 000 0 000
Q ss_pred ------------ccchH-HHH-HHHHHHHccCCCcEEEEeCCCCCC--ChHhHHHHHHHHHHHHhcCCcEEEEEecchhH
Q 004463 330 ------------STFSG-HIS-RIVDILELVSRESLVLIDEIGSGT--DPSEGVALATSILQYLRDRVGLAVVTTHYADL 393 (752)
Q Consensus 330 ------------stlSg-g~k-rl~~i~~la~~~~LlLLDEp~~gl--D~~~~~~L~~all~~l~~~~~tviitTH~~~l 393 (752)
...+. +.. ++..+.. ..++++|++|+|+... |+.....+...+.+.+.+.++++|+++|....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~ 175 (247)
T 2dr3_A 97 GKSKEYEKYIVHDLTDIREFIEVLRQAIR-DINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVG 175 (247)
T ss_dssp CC--CCCSCBCSCCSSHHHHHHHHHHHHH-HHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC--
T ss_pred ccccccccccccCccCHHHHHHHHHHHHH-HhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 01111 111 2222221 2478999999999887 66555666666777777889999999998542
Q ss_pred ---------Hhhhcccccc
Q 004463 394 ---------SCLKDKDTRF 403 (752)
Q Consensus 394 ---------~~~a~~~~~i 403 (752)
..+||.++.+
T Consensus 176 ~~~~~~~~~~~~~D~vi~L 194 (247)
T 2dr3_A 176 ERGFGGPGVEHGVDGIIRL 194 (247)
T ss_dssp --CCC-CCHHHHSSEEEEE
T ss_pred cccccccccceeEEEEEEE
Confidence 3456655544
No 133
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.55 E-value=8.4e-09 Score=112.82 Aligned_cols=126 Identities=14% Similarity=0.108 Sum_probs=75.2
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccc------
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTF------ 332 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stl------ 332 (752)
++++.+.+| ++++|+|||||||||||+++ +|++.|..+...+.... .+.... ....++.+
T Consensus 167 ~l~~~i~~G-~~i~ivG~sGsGKSTll~~l--------~~~~~~~~g~I~ie~~~----e~~~~~-~~~~v~~v~~q~~~ 232 (361)
T 2gza_A 167 FLRRAVQLE-RVIVVAGETGSGKTTLMKAL--------MQEIPFDQRLITIEDVP----ELFLPD-HPNHVHLFYPSEAK 232 (361)
T ss_dssp HHHHHHHTT-CCEEEEESSSSCHHHHHHHH--------HTTSCTTSCEEEEESSS----CCCCTT-CSSEEEEECC----
T ss_pred HHHHHHhcC-CEEEEECCCCCCHHHHHHHH--------HhcCCCCceEEEECCcc----ccCccc-cCCEEEEeecCccc
Confidence 678889999 89999999999999999999 66655555422221000 000000 00011111
Q ss_pred ---hHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhhhcccccccCC
Q 004463 333 ---SGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENA 406 (752)
Q Consensus 333 ---Sgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~a~~~~~i~~g 406 (752)
+++.. +-.+..++...|+.+++||+.. ..+.. +++.+.....+++.++|.......+++...+..+
T Consensus 233 ~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~-~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 233 EEENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYD-FINVAASGHGGSITSCHAGSCELTFERLALMVLQ 302 (361)
T ss_dssp ------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHH-HHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHTT
T ss_pred cccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHH-HHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 12333 3444456677999999999975 12222 4444544344679999997766677776655443
No 134
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.54 E-value=4.9e-08 Score=106.64 Aligned_cols=79 Identities=14% Similarity=0.040 Sum_probs=65.4
Q ss_pred hcCcc-cchHHHH-HHHHHHHcc---------CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHH
Q 004463 326 EQNLS-TFSGHIS-RIVDILELV---------SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS 394 (752)
Q Consensus 326 ~~~~s-tlSgg~k-rl~~i~~la---------~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~ 394 (752)
+++++ .+|+||+ +++++++++ .+|++|||||||++||+.....|...+.+ + +.++|++||. +.
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~-~---~qt~i~~th~-~~- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAAS-V---PQAIVTGTEL-AP- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHH-S---SEEEEEESSC-CT-
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHh-c---CcEEEEEEec-cc-
Confidence 45667 7999999 788889999 89999999999999999999998884433 3 3688999995 33
Q ss_pred hhhcccccccCCceeec
Q 004463 395 CLKDKDTRFENAATEFS 411 (752)
Q Consensus 395 ~~a~~~~~i~~g~v~~~ 411 (752)
.|++++.+.+|.+...
T Consensus 333 -~~~~i~~l~~G~i~~~ 348 (359)
T 2o5v_A 333 -GAALTLRAQAGRFTPV 348 (359)
T ss_dssp -TCSEEEEEETTEEEEC
T ss_pred -cCCEEEEEECCEEEec
Confidence 8888888999987654
No 135
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.48 E-value=1.8e-08 Score=103.67 Aligned_cols=30 Identities=20% Similarity=0.098 Sum_probs=26.0
Q ss_pred cCCCcEEEEe----CCCCCCChHhHHHHHHHHHH
Q 004463 346 VSRESLVLID----EIGSGTDPSEGVALATSILQ 375 (752)
Q Consensus 346 a~~~~LlLLD----Ep~~glD~~~~~~L~~all~ 375 (752)
+.+|++++|| |||+++|+.....+...+..
T Consensus 162 ~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~ 195 (246)
T 2bbw_A 162 FNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQ 195 (246)
T ss_dssp TSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHH
T ss_pred cCCCcccccccccccccccCCCCcHHHHHHHHHH
Confidence 8899999999 99999999988888774544
No 136
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.47 E-value=7.6e-07 Score=96.88 Aligned_cols=123 Identities=17% Similarity=0.184 Sum_probs=68.9
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHH-hhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHH-HHHH
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLG-LASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVD 341 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iG-li~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~ 341 (752)
+++| +++.|.||||+|||||+..+. .+.......+|+..+.... +. ....+|....--.-....+.++. .+..
T Consensus 58 l~~G-~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~-~~---~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 58 LPRG-RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALD-PE---YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp EETT-SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC-HH---HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred ccCC-eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcC-HH---HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 4678 899999999999999988883 2222222335666554222 11 24456643110000111233332 3322
Q ss_pred HHHccCCCcEEEEeCCCCCC----------Ch---HhH---HHHHHHHHHHHhcCCcEEEEEecch
Q 004463 342 ILELVSRESLVLIDEIGSGT----------DP---SEG---VALATSILQYLRDRVGLAVVTTHYA 391 (752)
Q Consensus 342 i~~la~~~~LlLLDEp~~gl----------D~---~~~---~~L~~all~~l~~~~~tviitTH~~ 391 (752)
.+....+|++|++|+|++.+ |+ ... ..+...+...+.+.++++|+++|..
T Consensus 133 ~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~ 198 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELR 198 (349)
T ss_dssp HHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred HHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 23234569999999999988 32 111 1222224444466799999999974
No 137
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.43 E-value=4.4e-07 Score=96.43 Aligned_cols=133 Identities=17% Similarity=0.129 Sum_probs=72.4
Q ss_pred cccccccCCeeEeeeEEEccCceEEEEEcCCCCCHHHHHHHH-HhhhhhhhhceeecCCCCCCchH---HHHHHHHcCCc
Q 004463 247 GSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPW---FDLILADIGDH 322 (752)
Q Consensus 247 ~~ls~~y~~~~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~aq~G~~vP~~~~~~l~~---~d~i~~~ig~~ 322 (752)
+++++.|+...-+++|. ++ ++++|+||||+||||+++.+ |++......-+++-.+.. .-.. +..+....|..
T Consensus 80 ~~l~~~~~~~~~~i~~~--~~-~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~-~~~~~~ql~~~~~~~~l~ 155 (295)
T 1ls1_A 80 EALKEALGGEARLPVLK--DR-NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ-RPAAREQLRLLGEKVGVP 155 (295)
T ss_dssp HHHHHHTTSSCCCCCCC--SS-EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS-CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHCCCCceeecC--CC-eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcc-cHhHHHHHHHhcccCCeE
Confidence 45667775433355665 67 89999999999999999999 343322211122222211 1111 11222333322
Q ss_pred hhh---hcCcccchHHHHHHHHHHHccCCCcEEEEeCC-CCCCChHhHHHHHHHHHHHHhcCCcEEEEEec
Q 004463 323 QSL---EQNLSTFSGHISRIVDILELVSRESLVLIDEI-GSGTDPSEGVALATSILQYLRDRVGLAVVTTH 389 (752)
Q Consensus 323 ~~i---~~~~stlSgg~krl~~i~~la~~~~LlLLDEp-~~glD~~~~~~L~~all~~l~~~~~tviitTH 389 (752)
-.. ...+. ...+.++..+...++++||+|+| +.|+|+.....+.. +.+.+. ...+++++..
T Consensus 156 ~~~~~~~~~p~----~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~-~~~~~~-~~~~~lv~~~ 220 (295)
T 1ls1_A 156 VLEVMDGESPE----SIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELAR-LKEVLG-PDEVLLVLDA 220 (295)
T ss_dssp EEECCTTCCHH----HHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHH-HHHHHC-CSEEEEEEEG
T ss_pred EEEcCCCCCHH----HHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHH-HhhhcC-CCEEEEEEeC
Confidence 110 11111 12243444444578999999999 88999877777665 444443 2334444443
No 138
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.37 E-value=4.9e-08 Score=108.62 Aligned_cols=133 Identities=17% Similarity=0.132 Sum_probs=82.1
Q ss_pred EeeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhh---------hhhhhceeecCC----------CC--------CCc
Q 004463 258 VPIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS---------LMSKAGLYLPAK----------NH--------PRL 309 (752)
Q Consensus 258 v~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~---------~~aq~G~~vP~~----------~~--------~~l 309 (752)
-+++|++..+ ..++|+||||+||||||+++ |... +....| +++.. .. ..+
T Consensus 148 ~~i~lelk~g-~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G-~V~~~~~~~~~l~DtpGli~~a~~~~~L 225 (416)
T 1udx_A 148 RRLRLELMLI-ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG-VVEVSEEERFTLADIPGIIEGASEGKGL 225 (416)
T ss_dssp EEEEEEECCS-CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE-EEECSSSCEEEEEECCCCCCCGGGSCCS
T ss_pred eeeeeEEcCC-CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceee-EEEecCcceEEEEeccccccchhhhhhh
Confidence 3899999999 89999999999999999999 4421 001111 11111 00 001
Q ss_pred hHHHHHHHHcCCch------hh-hcCcccchHHHHH-HHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCC
Q 004463 310 PWFDLILADIGDHQ------SL-EQNLSTFSGHISR-IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV 381 (752)
Q Consensus 310 ~~~d~i~~~ig~~~------~i-~~~~stlSgg~kr-l~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~ 381 (752)
+ ...+..+...+ ++ ...+..||+++++ ..++.+++..|.+|++ +.+|+... .....+.+.+.+.+
T Consensus 226 ~--~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g 298 (416)
T 1udx_A 226 G--LEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREG 298 (416)
T ss_dssp C--HHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTT
T ss_pred h--HHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcC
Confidence 1 11121111000 01 4667889999995 5555778899999999 99999877 44455667666667
Q ss_pred cEEEEEe-cchh-HHhhhcc
Q 004463 382 GLAVVTT-HYAD-LSCLKDK 399 (752)
Q Consensus 382 ~tviitT-H~~~-l~~~a~~ 399 (752)
.+++++| |..+ +..+.+.
T Consensus 299 ~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 299 LAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp SCEEECCTTTCTTHHHHHHH
T ss_pred CeEEEEECCCccCHHHHHHH
Confidence 6666555 4433 5554443
No 139
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.30 E-value=2.4e-08 Score=98.21 Aligned_cols=49 Identities=10% Similarity=-0.086 Sum_probs=33.3
Q ss_pred CCCChHhHHHHHHHHHHHHhcCCcEEEEEecc-hh-HHhhhcccccccCCceeec
Q 004463 359 SGTDPSEGVALATSILQYLRDRVGLAVVTTHY-AD-LSCLKDKDTRFENAATEFS 411 (752)
Q Consensus 359 ~glD~~~~~~L~~all~~l~~~~~tviitTH~-~~-l~~~a~~~~~i~~g~v~~~ 411 (752)
.++|+..... .. .+..+...+.++|.+||+ ++ ...+|+++. .+|++.++
T Consensus 126 ~~ld~~~~~~-~~-~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~ 176 (189)
T 2bdt_A 126 EQMGERCLEL-VE-EFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFC 176 (189)
T ss_dssp ---CGGGGHH-HH-HHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC
T ss_pred ccCCHHHHHH-HH-HHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEe
Confidence 3789977766 54 445555556789999998 65 667888776 77877664
No 140
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.28 E-value=9.7e-07 Score=95.22 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=23.4
Q ss_pred ccCceEEEEEcCCCCCHHHHHHHH-Hhhh
Q 004463 265 ECETRVVVITGPNTGGKTASMKTL-GLAS 292 (752)
Q Consensus 265 ~~g~~~~~I~GpNGsGKSTlLK~i-Gli~ 292 (752)
.+| ++++|+|||||||||+++.+ |++.
T Consensus 127 ~~g-~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 127 EKP-YVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp CSS-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCC-eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467 89999999999999999999 5543
No 141
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.27 E-value=2.3e-06 Score=91.38 Aligned_cols=94 Identities=21% Similarity=0.229 Sum_probs=56.9
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH-HhhhhhhhhceeecCCCCCCchHHHH---HHHHcCCchhhhcCcccchH
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDL---ILADIGDHQSLEQNLSTFSG 334 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~aq~G~~vP~~~~~~l~~~d~---i~~~ig~~~~i~~~~stlSg 334 (752)
++++...++ ++++|+||||+||||+++.+ +.+......-+++.++. ......++ +...++..- +...|+
T Consensus 96 ~~~~~~~~~-~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~-~r~~a~eqL~~~~~~~gl~~-----~~~~s~ 168 (306)
T 1vma_A 96 KLNVPPEPP-FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT-FRAAAIEQLKIWGERVGATV-----ISHSEG 168 (306)
T ss_dssp CCCCCSSSC-EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT-TCHHHHHHHHHHHHHHTCEE-----ECCSTT
T ss_pred CCcccCCCC-eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc-ccHHHHHHHHHHHHHcCCcE-----EecCCc
Confidence 445555667 89999999999999999999 34333222122333332 22233332 334444431 233455
Q ss_pred HHH-HH---HHHHHccCCCcEEEEeCCCC
Q 004463 335 HIS-RI---VDILELVSRESLVLIDEIGS 359 (752)
Q Consensus 335 g~k-rl---~~i~~la~~~~LlLLDEp~~ 359 (752)
++. ++ ++..++..+++++|+|+|+.
T Consensus 169 ~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 169 ADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 554 44 44556788999999999986
No 142
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.24 E-value=3.9e-08 Score=96.47 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=22.5
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHH
Q 004463 264 VECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
+.+| ++++|+|||||||||++|++
T Consensus 6 i~~g-~~i~l~G~~GsGKSTl~~~L 29 (191)
T 1zp6_A 6 DLGG-NILLLSGHPGSGKSTIAEAL 29 (191)
T ss_dssp CCTT-EEEEEEECTTSCHHHHHHHH
T ss_pred CCCC-eEEEEECCCCCCHHHHHHHH
Confidence 5678 89999999999999999999
No 143
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.24 E-value=1.1e-05 Score=87.81 Aligned_cols=122 Identities=16% Similarity=0.148 Sum_probs=68.6
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHH-hhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHH-HHHH
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLG-LASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVD 341 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iG-li~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~ 341 (752)
+++| +++.|+||||+|||||+.++. .+.......+|+-.+...... ...++|....--......+..+. .+..
T Consensus 58 i~~G-~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 58 YPRG-RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp EETT-EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred ccCC-cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 4678 899999999999999999983 333222223566555422211 44556653211111122333332 2222
Q ss_pred HHHccCCCcEEEEeCCCCCCChH-------------hHHHHH---HHHHHHHhcCCcEEEEEecc
Q 004463 342 ILELVSRESLVLIDEIGSGTDPS-------------EGVALA---TSILQYLRDRVGLAVVTTHY 390 (752)
Q Consensus 342 i~~la~~~~LlLLDEp~~glD~~-------------~~~~L~---~all~~l~~~~~tviitTH~ 390 (752)
.+.....++++++|..+.-.... ....+. ..+.....+.+++||++.|-
T Consensus 133 ~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv 197 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQI 197 (356)
T ss_dssp HHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEES
T ss_pred HHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 22234679999999987766411 012222 22333444568899999887
No 144
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.21 E-value=1.9e-07 Score=99.71 Aligned_cols=48 Identities=17% Similarity=0.381 Sum_probs=39.7
Q ss_pred CCeEEEcccccccCCeeE--eeeEEE-------------------ccCceEEEEEcCCCCCHHHHHHHH-Hhh
Q 004463 241 NSEMTVGSLSKGISDFPV--PIDIKV-------------------ECETRVVVITGPNTGGKTASMKTL-GLA 291 (752)
Q Consensus 241 ~~~l~~~~ls~~y~~~~v--~idl~l-------------------~~g~~~~~I~GpNGsGKSTlLK~i-Gli 291 (752)
++++++++|++.|+ ++ .+++.+ .+| .+++|+||||||||||++++ |++
T Consensus 35 ~~~i~~~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g-~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIP-YIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CTTCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCC-EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccccchHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCC-EEEEEECCCCCCHHHHHHHHHHHH
Confidence 35778999999994 33 677766 777 89999999999999999999 544
No 145
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.19 E-value=3.7e-07 Score=96.86 Aligned_cols=97 Identities=14% Similarity=0.171 Sum_probs=60.0
Q ss_pred cCceEEEEEcCCCCCHHHHHHHH-Hhhhhhh---hhceeecCCCC----------------------------CCchHHH
Q 004463 266 CETRVVVITGPNTGGKTASMKTL-GLASLMS---KAGLYLPAKNH----------------------------PRLPWFD 313 (752)
Q Consensus 266 ~g~~~~~I~GpNGsGKSTlLK~i-Gli~~~a---q~G~~vP~~~~----------------------------~~l~~~d 313 (752)
.+ .+++|+||+|||||||.+.| +++.... ..+.+|+++++ ..+..+.
T Consensus 30 ~~-~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 30 CP-LFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp SC-EEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 34 79999999999999999998 4443321 12223243321 1122233
Q ss_pred HHHHHcCCc------hh--hhcCcccchHHHH-HHHHH--HHccCCCcEEEEeCCCCCCChHh
Q 004463 314 LILADIGDH------QS--LEQNLSTFSGHIS-RIVDI--LELVSRESLVLIDEIGSGTDPSE 365 (752)
Q Consensus 314 ~i~~~ig~~------~~--i~~~~stlSgg~k-rl~~i--~~la~~~~LlLLDEp~~glD~~~ 365 (752)
..+..+... .. +...-..+||||. |+..+ +.+ +|++||+||+++++|+..
T Consensus 109 ~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 109 EVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp HHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred HHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 344444332 11 1223357899998 66654 333 899999999999999964
No 146
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.17 E-value=9.2e-07 Score=99.83 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=29.1
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH-Hhhh
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS 292 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gli~ 292 (752)
+++|++..| .+++|+||||||||||+++| |++.
T Consensus 285 ~Isl~i~~G-eVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 285 PLNVEGKAP-FVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp CCCCCSCTT-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceeeccCC-eEEEEECCCcccHHHHHHHHHHHhh
Confidence 677888889 99999999999999999999 5543
No 147
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.09 E-value=1.6e-06 Score=92.97 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
++++|+||||||||||||.+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l 24 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHI 24 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHH
Confidence 68999999999999999999
No 148
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.06 E-value=1.3e-05 Score=90.08 Aligned_cols=125 Identities=10% Similarity=0.040 Sum_probs=70.1
Q ss_pred EEccCceEEEEEcCCCCCHHHHHHHHHhhhhh--hhhceeecCCCCCCchHHHHHHH-HcCCc-----------------
Q 004463 263 KVECETRVVVITGPNTGGKTASMKTLGLASLM--SKAGLYLPAKNHPRLPWFDLILA-DIGDH----------------- 322 (752)
Q Consensus 263 ~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~--aq~G~~vP~~~~~~l~~~d~i~~-~ig~~----------------- 322 (752)
-+.+| ++++|.||+|+|||||+..+...... ....+|+..+. ..-.+..++++ ..|..
T Consensus 199 Gl~~G-~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~-s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~ 276 (454)
T 2r6a_A 199 GFQRS-DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM-SAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKL 276 (454)
T ss_dssp SBCTT-CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS-CHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHH
T ss_pred CCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC-CHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHH
Confidence 36788 89999999999999999998433222 11223433332 11122222221 11110
Q ss_pred ----------hhhhcCcccchHHHHH-HHHHHHccCCCcEEEEeCCCCCCChH--------hHHHHHHHHHHHHhcCCcE
Q 004463 323 ----------QSLEQNLSTFSGHISR-IVDILELVSRESLVLIDEIGSGTDPS--------EGVALATSILQYLRDRVGL 383 (752)
Q Consensus 323 ----------~~i~~~~stlSgg~kr-l~~i~~la~~~~LlLLDEp~~glD~~--------~~~~L~~all~~l~~~~~t 383 (752)
...-.....+|.++.+ .+..+....++++|++|+++...++. ....+...+.....+.+++
T Consensus 277 ~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~ 356 (454)
T 2r6a_A 277 TMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVP 356 (454)
T ss_dssp HHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCe
Confidence 0111123456777664 22223334689999999999887542 2234444333333356899
Q ss_pred EEEEec
Q 004463 384 AVVTTH 389 (752)
Q Consensus 384 viitTH 389 (752)
||+++|
T Consensus 357 vi~~sq 362 (454)
T 2r6a_A 357 VIALSQ 362 (454)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 999999
No 149
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.06 E-value=1.6e-05 Score=86.08 Aligned_cols=119 Identities=13% Similarity=0.007 Sum_probs=69.2
Q ss_pred EEEEEcCCCCCHHHHHHHHH-hhhhh-hhhceeecCCCCC-CchHHHHHHHHcCCchhhhcCcccchHHH-H-HHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTLG-LASLM-SKAGLYLPAKNHP-RLPWFDLILADIGDHQSLEQNLSTFSGHI-S-RIVDILE 344 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~iG-li~~~-aq~G~~vP~~~~~-~l~~~d~i~~~ig~~~~i~~~~stlSgg~-k-rl~~i~~ 344 (752)
.++|+||+|+||||+++.+. .+... ...-.++.+.... ...++..++..++... +....+... . ++...+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~l~~~l~ 121 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPF----PRRGLSRDEFLALLVEHLR 121 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCC----CSSCCCHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccC----CCCCCCHHHHHHHHHHHHh
Confidence 79999999999999999982 22111 0111233333211 2345666666665421 111222222 2 3333343
Q ss_pred ccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc---CCcEEEEEecchhHH
Q 004463 345 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD---RVGLAVVTTHYADLS 394 (752)
Q Consensus 345 la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~---~~~tviitTH~~~l~ 394 (752)
....|.+|+|||+... |+.....|.. +++.+.. .+.++|++||+.++.
T Consensus 122 ~~~~~~vlilDE~~~l-~~~~~~~L~~-~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 122 ERDLYMFLVLDDAFNL-APDILSTFIR-LGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HTTCCEEEEEETGGGS-CHHHHHHHHH-HTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred hcCCeEEEEEECcccc-chHHHHHHHH-HHHhCCCCCcCCEEEEEEECCchHH
Confidence 4567889999999876 7666555555 3333333 467899999987643
No 150
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.96 E-value=2.1e-06 Score=87.18 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=21.5
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
++||++.+| ++++|+|||||||||+++++
T Consensus 19 ~~sl~v~~G-~ii~l~Gp~GsGKSTl~~~L 47 (231)
T 3lnc_A 19 PGSMLKSVG-VILVLSSPSGCGKTTVANKL 47 (231)
T ss_dssp ---CCEECC-CEEEEECSCC----CHHHHH
T ss_pred CCCcccCCC-CEEEEECCCCCCHHHHHHHH
Confidence 889999999 99999999999999999999
No 151
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.92 E-value=4.4e-07 Score=98.24 Aligned_cols=45 Identities=16% Similarity=0.050 Sum_probs=38.8
Q ss_pred eEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
+++++++++.|++..+ ++++++.+| .+++|+||||+||||||+++
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g-~~v~i~G~~GaGKSTLl~~l 75 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRA-IRVGITGVPGVGKSTTIDAL 75 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCS-EEEEEECCTTSCHHHHHHHH
T ss_pred HHeeCCcccccChHHHHHhCCcccCCC-eEEEEECCCCCCHHHHHHHH
Confidence 3557788888875554 888999999 99999999999999999999
No 152
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.88 E-value=9.6e-06 Score=97.08 Aligned_cols=132 Identities=15% Similarity=0.168 Sum_probs=78.1
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHHhhhhhhh-----hceeecCCCCCCchHHHHHHHHcCCc--------------hh
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLGLASLMSK-----AGLYLPAKNHPRLPWFDLILADIGDH--------------QS 324 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq-----~G~~vP~~~~~~l~~~d~i~~~ig~~--------------~~ 324 (752)
+..| +.++|+|||||||||++.++-+...... +.+..|... ......+.+...++.. ..
T Consensus 106 l~~~-~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~-La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~ 183 (773)
T 2xau_A 106 YQNN-QIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRV-AAMSVAQRVAEEMDVKLGEEVGYSIRFENKTS 183 (773)
T ss_dssp HHHC-SEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHH-HHHHHHHHHHHHTTCCBTTTEEEEETTEEECC
T ss_pred HhCC-CeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHH-HHHHHHHHHHHHhCCchhheecceeccccccC
Confidence 3456 7899999999999998888722211111 112224221 1112233343333321 11
Q ss_pred hhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCC-CCChHhHHHHHHHHHHHHhcCCcEEEE-Eecchh-HHhhhc
Q 004463 325 LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS-GTDPSEGVALATSILQYLRDRVGLAVV-TTHYAD-LSCLKD 398 (752)
Q Consensus 325 i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~-glD~~~~~~L~~all~~l~~~~~tvii-tTH~~~-l~~~a~ 398 (752)
....+..++.|+. +.......+.++++|||||+.. ++|+.....+...++.. .....++++ +||+.+ +..+.+
T Consensus 184 ~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~-~~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 184 NKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKR-RPDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp TTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHH-CTTCEEEEEESCSCCHHHHHHTT
T ss_pred CCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHh-CCCceEEEEeccccHHHHHHHhc
Confidence 2344667788887 6666666789999999999995 99987666665544433 223346666 499865 544443
No 153
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.87 E-value=7.2e-06 Score=92.64 Aligned_cols=40 Identities=18% Similarity=0.281 Sum_probs=34.6
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCC
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPR 308 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~ 308 (752)
++||++.+ ++++|+|||||||||||++| +|+..|..|...
T Consensus 22 ~vsl~i~~--e~~~liG~nGsGKSTLl~~l--------~Gl~~p~~G~I~ 61 (483)
T 3euj_A 22 ARTFDFDE--LVTTLSGGNGAGKSTTMAGF--------VTALIPDLTLLN 61 (483)
T ss_dssp EEEEECCS--SEEEEECCTTSSHHHHHHHH--------HHHHCCCTTTCC
T ss_pred ceEEEEcc--ceEEEECCCCCcHHHHHHHH--------hcCCCCCCCEEE
Confidence 89999987 79999999999999999999 777777776443
No 154
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.87 E-value=1.8e-05 Score=89.34 Aligned_cols=106 Identities=19% Similarity=0.239 Sum_probs=58.4
Q ss_pred eeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhcee-ecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHH-
Q 004463 260 IDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLY-LPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS- 337 (752)
Q Consensus 260 idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~-vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~k- 337 (752)
+++.++.| ++|+||+|+|||||+|.++- ..+.+ +..++ .+....... .++.+
T Consensus 44 ~g~~~p~g---vLL~GppGtGKT~Laraia~-----~~~~~f~~is~----------------~~~~~~~~g--~~~~~~ 97 (476)
T 2ce7_A 44 IGARMPKG---ILLVGPPGTGKTLLARAVAG-----EANVPFFHISG----------------SDFVELFVG--VGAARV 97 (476)
T ss_dssp TTCCCCSE---EEEECCTTSSHHHHHHHHHH-----HHTCCEEEEEG----------------GGTTTCCTT--HHHHHH
T ss_pred cCCCCCCe---EEEECCCCCCHHHHHHHHHH-----HcCCCeeeCCH----------------HHHHHHHhc--ccHHHH
Confidence 34444444 78999999999999999921 11211 11010 000000000 12333
Q ss_pred HHHHHHHccCCCcEEEEeCCC----------CCCChHhHHHHHHHHHHHHh----cCCcEEEEEecchh
Q 004463 338 RIVDILELVSRESLVLIDEIG----------SGTDPSEGVALATSILQYLR----DRVGLAVVTTHYAD 392 (752)
Q Consensus 338 rl~~i~~la~~~~LlLLDEp~----------~glD~~~~~~L~~all~~l~----~~~~tviitTH~~~ 392 (752)
|-.+..+....|.+|+|||+. .|.|+.....+.. ++..+. ..+..||.+||..+
T Consensus 98 r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~-LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 98 RDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQ-LLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHH-HHHHHHHSCGGGTEEEEEEESCGG
T ss_pred HHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHH-HHHHHhccCCCCCEEEEEecCChh
Confidence 444445566789999999993 3556654444444 555553 23568899999875
No 155
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.86 E-value=4.8e-05 Score=82.35 Aligned_cols=128 Identities=14% Similarity=0.125 Sum_probs=71.6
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHHhhhhh-------hhhceeecCCCCCCchHHHHHHHHcCCchh-hhcCc---ccc
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLGLASLM-------SKAGLYLPAKNHPRLPWFDLILADIGDHQS-LEQNL---STF 332 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~-------aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~-i~~~~---stl 332 (752)
+++| +++.|.||+|+|||||+..+.....+ ....+|+..+......-+..++..+|.... +-.++ ..+
T Consensus 119 l~~G-~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 119 IESM-AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp BCSS-EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCC-eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 4678 89999999999999999998544322 122346655542122233444555665321 00111 112
Q ss_pred hHHHH-H-HHHHHHcc----CCCcEEEEeCCCCCCChH--------h----HHHHHHHHHHHHhcCCcEEEEEecchh
Q 004463 333 SGHIS-R-IVDILELV----SRESLVLIDEIGSGTDPS--------E----GVALATSILQYLRDRVGLAVVTTHYAD 392 (752)
Q Consensus 333 Sgg~k-r-l~~i~~la----~~~~LlLLDEp~~glD~~--------~----~~~L~~all~~l~~~~~tviitTH~~~ 392 (752)
+.+.. . +..+..++ .++++|++|.+++-..+. . ...+...+.....+.+++||+++|...
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence 23222 2 22222222 678999999999876442 1 123333344444556889999999754
No 156
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.85 E-value=5.1e-06 Score=82.02 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=23.0
Q ss_pred eEEEccCceEEEEEcCCCCCHHHHHHHH-Hh
Q 004463 261 DIKVECETRVVVITGPNTGGKTASMKTL-GL 290 (752)
Q Consensus 261 dl~l~~g~~~~~I~GpNGsGKSTlLK~i-Gl 290 (752)
|+++.+| ++++|+||||||||||++++ |+
T Consensus 1 s~~m~~g-~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 1 SNAMNKA-NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp ----CCC-CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcCCCC-cEEEEECcCCCCHHHHHHHHHhh
Confidence 3566778 89999999999999999999 44
No 157
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.71 E-value=8.3e-05 Score=79.70 Aligned_cols=127 Identities=14% Similarity=0.176 Sum_probs=72.4
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHHhhhhhh-------hhceeecCCCCCCchHHHHHHHHcCCchh-hhcC---cccc
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLGLASLMS-------KAGLYLPAKNHPRLPWFDLILADIGDHQS-LEQN---LSTF 332 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~a-------q~G~~vP~~~~~~l~~~d~i~~~ig~~~~-i~~~---~stl 332 (752)
+++| .++.|.||+|+|||||+..+....... ...+|+..+......-+..++..+|.... +..+ ...+
T Consensus 104 l~~G-~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 104 IETR-TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp EETT-SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCC-cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 4678 899999999999999999985443221 22356655542122223344556665321 1011 1223
Q ss_pred hHHHH--HHHHHHHcc---CCCcEEEEeCCCCCCCh--------HhH----HHHHHHHHHHHhcCCcEEEEEecch
Q 004463 333 SGHIS--RIVDILELV---SRESLVLIDEIGSGTDP--------SEG----VALATSILQYLRDRVGLAVVTTHYA 391 (752)
Q Consensus 333 Sgg~k--rl~~i~~la---~~~~LlLLDEp~~glD~--------~~~----~~L~~all~~l~~~~~tviitTH~~ 391 (752)
+.++. -+..+..++ .++++|++|.+++-... .++ ..+...+.....+.+++||+++|-.
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 44332 233333333 67999999999976532 122 2333334444455688999998864
No 158
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.69 E-value=2.1e-05 Score=88.04 Aligned_cols=102 Identities=15% Similarity=0.251 Sum_probs=59.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhhhhhhc---eeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHHHHHHHHHc
Q 004463 269 RVVVITGPNTGGKTASMKTLGLASLMSKAG---LYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILEL 345 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iGli~~~aq~G---~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~krl~~i~~l 345 (752)
..++|.||+|+|||||++.++-.......+ .++.+.. +...+...+... ........
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~-----~~~~~~~~~~~~---------------~~~~~~~~ 190 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK-----FLNDLVDSMKEG---------------KLNEFREK 190 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH-----HHHHHHHHHHTT---------------CHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH-----HHHHHHHHHHcc---------------cHHHHHHH
Confidence 568999999999999999994322111001 1221111 111222111100 01111122
Q ss_pred cC-CCcEEEEeCCCCCCCh-HhHHHHHHHHHHHHhcCCcEEEEEecch
Q 004463 346 VS-RESLVLIDEIGSGTDP-SEGVALATSILQYLRDRVGLAVVTTHYA 391 (752)
Q Consensus 346 a~-~~~LlLLDEp~~glD~-~~~~~L~~all~~l~~~~~tviitTH~~ 391 (752)
.. ++++|+|||+..-.+. .....+.. +++.+.+.+..+|++||..
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~-~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFH-TFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHH-HHHHHHTTTCEEEEEESSC
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHH-HHHHHHHCCCeEEEEECCC
Confidence 23 8999999999887764 44555655 6666777788999999974
No 159
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.68 E-value=3.7e-06 Score=87.20 Aligned_cols=45 Identities=22% Similarity=0.250 Sum_probs=29.6
Q ss_pred eEEEccc-cccc-CCeeE--eeeEEEcc---CceEEEEEcCCCCCHHHHHHHH
Q 004463 243 EMTVGSL-SKGI-SDFPV--PIDIKVEC---ETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 243 ~l~~~~l-s~~y-~~~~v--~idl~l~~---g~~~~~I~GpNGsGKSTlLK~i 288 (752)
+++++|+ +++| ++..+ +++|++.+ | ++++|+||+||||||+.+.+
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g-~~i~l~G~~GsGKSTl~~~L 68 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNG-RSMYLVGMMGSGKTTVGKIM 68 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTT-CCEEEECSTTSCHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCC-CEEEEECCCCCCHHHHHHHH
Confidence 5778999 9999 65555 99999998 9 89999999999999999999
No 160
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.65 E-value=1.9e-05 Score=85.06 Aligned_cols=120 Identities=14% Similarity=0.090 Sum_probs=60.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHH-hhhhh---hhhceeecCCCC-CCchHHHHHHHHcCCchhhhcCcccchHHH-H-HHHH
Q 004463 269 RVVVITGPNTGGKTASMKTLG-LASLM---SKAGLYLPAKNH-PRLPWFDLILADIGDHQSLEQNLSTFSGHI-S-RIVD 341 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iG-li~~~---aq~G~~vP~~~~-~~l~~~d~i~~~ig~~~~i~~~~stlSgg~-k-rl~~ 341 (752)
..++|+||+|+|||||++.+. .+... ...-.++.+... .....+..++..++... .....+... . ++..
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~l~~ 121 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKV----PFTGLSIAELYRRLVK 121 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCC----CSSSCCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCC----CCCCCCHHHHHHHHHH
Confidence 689999999999999999982 22111 001112222110 11122333333333211 111222222 2 3443
Q ss_pred HHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHH---hcCCcEEEEEecchhH
Q 004463 342 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL---RDRVGLAVVTTHYADL 393 (752)
Q Consensus 342 i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l---~~~~~tviitTH~~~l 393 (752)
.+.....|.+|+|||+....+......+ ..+++.+ ...+.++|++||+..+
T Consensus 122 ~l~~~~~~~vlilDE~~~l~~~~~~~~l-~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 122 AVRDYGSQVVIVLDEIDAFVKKYNDDIL-YKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp HHHTCCSCEEEEEETHHHHHHSSCSTHH-HHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred HHhccCCeEEEEEcChhhhhccCcCHHH-HHHhhchhhcCCCeEEEEEEECCCCh
Confidence 4444455899999999876533211222 2254544 2335688999998764
No 161
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.65 E-value=6.1e-07 Score=98.97 Aligned_cols=60 Identities=8% Similarity=-0.121 Sum_probs=42.6
Q ss_pred CC--cEEEEeCCCCCCChHhHHHHHHHHHHHH-hcCCcEEEEEecchh-HHhhhcccc-cccCC-ceee
Q 004463 348 RE--SLVLIDEIGSGTDPSEGVALATSILQYL-RDRVGLAVVTTHYAD-LSCLKDKDT-RFENA-ATEF 410 (752)
Q Consensus 348 ~~--~LlLLDEp~~glD~~~~~~L~~all~~l-~~~~~tviitTH~~~-l~~~a~~~~-~i~~g-~v~~ 410 (752)
+| ++.++|||+.+.|+........ .++.+ ...|.|++ +|+.. +..+|++.. .+.+| ...+
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~-~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~ 204 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLE-GLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIR 204 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGG
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHH-HHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceee
Confidence 67 8889999999999988777666 44445 44455543 99866 667888877 67777 5543
No 162
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.64 E-value=0.00036 Score=75.95 Aligned_cols=122 Identities=19% Similarity=0.251 Sum_probs=67.5
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHHhhhh-hhhhceeecCCCCCCchHHHHHHHHcCCchh-hhcCcccchHHHH-HHH
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGDHQS-LEQNLSTFSGHIS-RIV 340 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~-~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~-i~~~~stlSgg~k-rl~ 340 (752)
+++| +++.|.||+|+|||||...+..... .....+|+..+.... + .....+|.... +. -...-+..+. .+.
T Consensus 60 l~~G-~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~-~---~~a~~~g~~~~~l~-i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 60 LPMG-RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD-P---IYARKLGVDIDNLL-CSQPDTGEQALEIC 133 (356)
T ss_dssp EETT-SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC-H---HHHHHTTCCGGGCE-EECCSSHHHHHHHH
T ss_pred ccCC-eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCcc-H---HHHHHcCCChhhee-eeCCCCHHHHHHHH
Confidence 4678 8999999999999999988843222 222345666654322 1 12445554311 10 0001122222 222
Q ss_pred HHHHccCCCcEEEEeCCCCCCChHh------------H----HHHHHHHHHHHhcCCcEEEEEecch
Q 004463 341 DILELVSRESLVLIDEIGSGTDPSE------------G----VALATSILQYLRDRVGLAVVTTHYA 391 (752)
Q Consensus 341 ~i~~la~~~~LlLLDEp~~glD~~~------------~----~~L~~all~~l~~~~~tviitTH~~ 391 (752)
..+.....+++|++|.++.-....+ . ..+...+...+.+.+++||+++|-.
T Consensus 134 ~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~ 200 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 200 (356)
T ss_dssp HHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--
T ss_pred HHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 2222246899999999998764211 1 1223334444566789999999964
No 163
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.64 E-value=2.1e-06 Score=87.85 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=38.1
Q ss_pred eEEEcccccccCCeeEeeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCC
Q 004463 243 EMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP 307 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~ 307 (752)
+|.++|+...|+. +|++.+ .+++|+|||||||||||++| +|+..|..|..
T Consensus 9 ~l~l~~~~~~~~~-----~~~~~~--~~~~i~GpnGsGKSTll~~i--------~g~~~~~~G~i 58 (227)
T 1qhl_A 9 SLTLINWNGFFAR-----TFDLDE--LVTTLSGGNGAGKSTTMAAF--------VTALIPDLTLL 58 (227)
T ss_dssp EEEEEEETTEEEE-----EECHHH--HHHHHHSCCSHHHHHHHHHH--------HHHHSCCTTTC
T ss_pred EEEEEeeecccCC-----EEEEcC--cEEEEECCCCCCHHHHHHHH--------hcccccCCCeE
Confidence 3567777765543 455554 58899999999999999999 88777877643
No 164
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.63 E-value=3e-05 Score=88.18 Aligned_cols=29 Identities=10% Similarity=0.339 Sum_probs=25.7
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
++.+.+..+ ..++|.|++||||||+|+++
T Consensus 159 pv~ldL~~~-pHlLIaG~TGSGKSt~L~~l 187 (512)
T 2ius_A 159 PVVADLAKM-PHLLVAGTTGSGASVGVNAM 187 (512)
T ss_dssp EEEEEGGGS-CSEEEECCTTSSHHHHHHHH
T ss_pred EEEEEcccC-ceEEEECCCCCCHHHHHHHH
Confidence 567777777 78999999999999999998
No 165
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.63 E-value=1.8e-05 Score=86.19 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=59.9
Q ss_pred cCceEEEEEcCCCCCHHHHHHHH-Hhhh-hhh----------------hhceeecCCCCC--CchH--------------
Q 004463 266 CETRVVVITGPNTGGKTASMKTL-GLAS-LMS----------------KAGLYLPAKNHP--RLPW-------------- 311 (752)
Q Consensus 266 ~g~~~~~I~GpNGsGKSTlLK~i-Gli~-~~a----------------q~G~~vP~~~~~--~l~~-------------- 311 (752)
.| ++++|+||||+||||||++| |+.. +.. ..-.++|+.+.. ..++
T Consensus 214 ~G-~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~l~~l~~~e~~ 292 (358)
T 2rcn_A 214 TG-RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLWHLEPEQIT 292 (358)
T ss_dssp TT-SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCCCCCCCHHHHH
T ss_pred CC-CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhhhcCCCHHHHH
Confidence 57 79999999999999999999 5544 210 000234433210 0011
Q ss_pred --HHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc
Q 004463 312 --FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD 379 (752)
Q Consensus 312 --~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~ 379 (752)
|..++..+|+.+..+....++| |++ |++++.+ +.+..+......+++.+.+
T Consensus 293 ~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~g----------------li~~~R~~~y~~l~~e~~~ 346 (358)
T 2rcn_A 293 QGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENG----------------AIAETRFENYHRILESMAQ 346 (358)
T ss_dssp HTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHT----------------SSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhc----------------CCCHHHHHHHHHHHHHHHh
Confidence 2234455677777788889999 777 7777654 4555677766667776544
No 166
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.59 E-value=0.00022 Score=79.52 Aligned_cols=118 Identities=14% Similarity=0.165 Sum_probs=62.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh-hhhhhhhceeecCCCCCCchHHHHHH---HHcCCchhhhcCcccch-HHHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTLGL-ASLMSKAGLYLPAKNHPRLPWFDLIL---ADIGDHQSLEQNLSTFS-GHISRIVDIL 343 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iGl-i~~~aq~G~~vP~~~~~~l~~~d~i~---~~ig~~~~i~~~~stlS-gg~krl~~i~ 343 (752)
.+++++||||+||||++..++. +......-+++.++. .....++++. ..+|..-. ....... ....+-++..
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~-~r~~a~eqL~~~~~~~gv~~~--~~~~~~dp~~i~~~al~~ 174 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV-YRPAAYDQLLQLGNQIGVQVY--GEPNNQNPIEIAKKGVDI 174 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC-SCHHHHHHHHHHHHTTTCCEE--CCTTCSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc-cchhHHHHHHHHHHhcCCcee--eccccCCHHHHHHHHHHH
Confidence 7999999999999999999842 222222222333332 2333344332 22232110 0000111 1111222223
Q ss_pred HccCCCcEEEEeCCCC-C--CChHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 004463 344 ELVSRESLVLIDEIGS-G--TDPSEGVALATSILQYLRDRVGLAVVTTHY 390 (752)
Q Consensus 344 ~la~~~~LlLLDEp~~-g--lD~~~~~~L~~all~~l~~~~~tviitTH~ 390 (752)
+...++++||+|+|+. + +|+.....+.. +...+......+++.+|.
T Consensus 175 a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~-i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 175 FVKNKMDIIIVDTAGRHGYGEETKLLEEMKE-MYDVLKPDDVILVIDASI 223 (433)
T ss_dssp TTTTTCSEEEEEECCCSSSCCTTHHHHHHHH-HHHHHCCSEEEEEEEGGG
T ss_pred HHhcCCCEEEEECCCCccccCCHHHHHHHHH-HHHhhCCcceEEEEeCcc
Confidence 3346899999999994 5 78876666665 555554433445555554
No 167
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.58 E-value=3.2e-05 Score=79.41 Aligned_cols=40 Identities=15% Similarity=0.269 Sum_probs=31.8
Q ss_pred EcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 246 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 246 ~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
++++.+.|++..+ ++++.++.| ++|+||||+|||||++++
T Consensus 28 l~~l~~~~~~~~~~~~~~~~~~~g---~ll~G~~G~GKTtl~~~i 69 (254)
T 1ixz_A 28 LKEIVEFLKNPSRFHEMGARIPKG---VLLVGPPGVGKTHLARAV 69 (254)
T ss_dssp HHHHHHHHHCHHHHHHTTCCCCSE---EEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHcCCCCCCe---EEEECCCCCCHHHHHHHH
Confidence 5667776755433 677777766 899999999999999999
No 168
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.58 E-value=3.6e-05 Score=76.87 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=23.6
Q ss_pred ccCceEEEEEcCCCCCHHHHHHHH-Hhhh
Q 004463 265 ECETRVVVITGPNTGGKTASMKTL-GLAS 292 (752)
Q Consensus 265 ~~g~~~~~I~GpNGsGKSTlLK~i-Gli~ 292 (752)
.+| .+++|+||||||||||+++| |++.
T Consensus 20 ~~g-~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGR-QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSC-EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCC-eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 567 89999999999999999999 5544
No 169
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.57 E-value=3.1e-05 Score=75.08 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=24.4
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
++++.+.+| +++|+|||||||||+|++|
T Consensus 19 ~~~~~~~~g--~~~i~G~NGsGKStll~ai 46 (182)
T 3kta_A 19 KVVIPFSKG--FTAIVGANGSGKSNIGDAI 46 (182)
T ss_dssp CEEEECCSS--EEEEEECTTSSHHHHHHHH
T ss_pred cEEEecCCC--cEEEECCCCCCHHHHHHHH
Confidence 356667776 8999999999999999999
No 170
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.54 E-value=2.2e-05 Score=77.57 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..++|+||+|+|||||++.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i 74 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAI 74 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 56899999999999999998
No 171
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.51 E-value=2.6e-05 Score=77.53 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=20.9
Q ss_pred ccCceEEEEEcCCCCCHHHHHHHH-Hhh
Q 004463 265 ECETRVVVITGPNTGGKTASMKTL-GLA 291 (752)
Q Consensus 265 ~~g~~~~~I~GpNGsGKSTlLK~i-Gli 291 (752)
.+| ++++|+||||||||||++++ |+.
T Consensus 2 ~~g-~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGP-RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCCCCHHHHHHHHHhhC
Confidence 356 78999999999999999999 544
No 172
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.48 E-value=0.00019 Score=77.46 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=70.0
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHHhhhhh-hhhceeecCCCCCCchHHHHHHHHc-CCc-hhhhcCcccchHHHH-HH
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADI-GDH-QSLEQNLSTFSGHIS-RI 339 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~-aq~G~~vP~~~~~~l~~~d~i~~~i-g~~-~~i~~~~stlSgg~k-rl 339 (752)
+.+| ++++|.|++|+|||||+..+...... ....+|+..+. +.-.+..++++.. +.. +.+.. ..||.++. ++
T Consensus 43 l~~G-~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm-s~~ql~~Rlls~~~~v~~~~l~~--g~Ls~~e~~~l 118 (338)
T 4a1f_A 43 FNKG-SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM-SAEQLALRALSDLTSINMHDLES--GRLDDDQWENL 118 (338)
T ss_dssp BCTT-CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS-CHHHHHHHHHHHHHCCCHHHHHH--TCCCHHHHHHH
T ss_pred CCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC-CHHHHHHHHHHHhhCCCHHHHhc--CCCCHHHHHHH
Confidence 4678 89999999999999999988443322 11223333222 2222333443322 222 11222 36888877 88
Q ss_pred HHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHh-cC-CcEEEEEecch
Q 004463 340 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR-DR-VGLAVVTTHYA 391 (752)
Q Consensus 340 ~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~-~~-~~tviitTH~~ 391 (752)
..+...+.+++|.|.|+|+. ++.+ |.. .++.+. +. +..+||+-|..
T Consensus 119 ~~a~~~l~~~~l~I~d~~~~--si~~---i~~-~ir~l~~~~gg~~lIVIDyLq 166 (338)
T 4a1f_A 119 AKCFDHLSQKKLFFYDKSYV--RIEQ---IRL-QLRKLKSQHKELGIAFIDYLQ 166 (338)
T ss_dssp HHHHHHHHHSCEEEECCTTC--CHHH---HHH-HHHHHHHHCTTEEEEEEEEEE
T ss_pred HHHHHHHhcCCeEEeCCCCC--cHHH---HHH-HHHHHHHhcCCCCEEEEechH
Confidence 88877777889999999864 3433 333 333333 34 56788877653
No 173
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.48 E-value=3.4e-05 Score=75.64 Aligned_cols=23 Identities=39% Similarity=0.627 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH-Hhh
Q 004463 269 RVVVITGPNTGGKTASMKTL-GLA 291 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i-Gli 291 (752)
++++|+|||||||||+++++ |++
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 68999999999999999999 443
No 174
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.48 E-value=4.9e-05 Score=82.59 Aligned_cols=113 Identities=16% Similarity=0.096 Sum_probs=65.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCC--CCC----chHH--HH-HHHHcCCchhhhcCcccchHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKN--HPR----LPWF--DL-ILADIGDHQSLEQNLSTFSGHISRI 339 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~--~~~----l~~~--d~-i~~~ig~~~~i~~~~stlSgg~krl 339 (752)
-.++|+|+||+|||||++.+ +|....... ... +..+ +. -+..++.....+.....+++++++.
T Consensus 168 ~~v~lvG~~gvGKSTLin~L--------~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 239 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKAL--------TTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQA 239 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHH--------CSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH--------hCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHH
Confidence 57899999999999999999 443211100 000 0000 00 0000111112234555677777654
Q ss_pred HHHHHccCCCcEEEEe-CCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEe--cch
Q 004463 340 VDILELVSRESLVLID-EIGSGTDPSEGVALATSILQYLRDRVGLAVVTT--HYA 391 (752)
Q Consensus 340 ~~i~~la~~~~LlLLD-Ep~~glD~~~~~~L~~all~~l~~~~~tviitT--H~~ 391 (752)
..+.....+.-|+++| +++.++|+.....+...+.... . +..+|++. ||.
T Consensus 240 ~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~-~~piilV~NK~Dl 292 (357)
T 2e87_A 240 ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-K-DLPFLVVINKIDV 292 (357)
T ss_dssp HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-T-TSCEEEEECCTTT
T ss_pred HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-C-CCCEEEEEECccc
Confidence 4444455677789999 9999999988777666454432 2 55666666 775
No 175
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.48 E-value=4e-05 Score=79.94 Aligned_cols=41 Identities=15% Similarity=0.262 Sum_probs=32.8
Q ss_pred EEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 245 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 245 ~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
+++++.+.|++..+ ++++.++.| ++|+||||+|||||++++
T Consensus 51 ~l~~l~~~~~~~~~l~~~~~~~~~g---vll~Gp~GtGKTtl~~~i 93 (278)
T 1iy2_A 51 ELKEIVEFLKNPSRFHEMGARIPKG---VLLVGPPGVGKTHLARAV 93 (278)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCCE---EEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe---EEEECCCcChHHHHHHHH
Confidence 35677777765444 677777766 899999999999999999
No 176
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.45 E-value=1.1e-05 Score=89.72 Aligned_cols=42 Identities=19% Similarity=0.353 Sum_probs=32.1
Q ss_pred EEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 244 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 244 l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
+.++++++.|+...+ .+ + ..+| .+++|+|||||||||||+++
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l-~-~~~g-gii~I~GpnGSGKTTlL~al 187 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRL-I-KRPH-GIILVTGPTGSGKSTTLYAG 187 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHH-H-TSSS-EEEEEECSTTSCHHHHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHH-H-HhcC-CeEEEECCCCCCHHHHHHHH
Confidence 346677777755433 44 3 2566 89999999999999999999
No 177
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.44 E-value=0.00012 Score=76.58 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=23.4
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
++++.++.| ++|+||||+|||||+|++
T Consensus 38 ~~~l~~~~G---vlL~Gp~GtGKTtLakal 64 (274)
T 2x8a_A 38 ALGLVTPAG---VLLAGPPGCGKTLLAKAV 64 (274)
T ss_dssp HTTCCCCSE---EEEESSTTSCHHHHHHHH
T ss_pred HcCCCCCCe---EEEECCCCCcHHHHHHHH
Confidence 556666666 899999999999999999
No 178
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.44 E-value=7.8e-05 Score=73.03 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=28.5
Q ss_pred HHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHH
Q 004463 339 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 376 (752)
Q Consensus 339 l~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~ 376 (752)
...+.+++.+|.++++| ++++|+.....+...+.+.
T Consensus 154 ~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 154 TDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 44566677788899999 9999999988888766654
No 179
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.43 E-value=2e-05 Score=84.88 Aligned_cols=46 Identities=24% Similarity=0.285 Sum_probs=34.4
Q ss_pred eEEEcccccccCCeeE--eeeEEEccC------ceEEEEEcCCCCCHHHHHHHH
Q 004463 243 EMTVGSLSKGISDFPV--PIDIKVECE------TRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 243 ~l~~~~ls~~y~~~~v--~idl~l~~g------~~~~~I~GpNGsGKSTlLK~i 288 (752)
+++.++++..||...+ ++++.+..| .+.++|+||||+|||||++++
T Consensus 18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~i 71 (334)
T 1in4_A 18 FLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHII 71 (334)
T ss_dssp TTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHH
T ss_pred HcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHH
Confidence 3445677777776554 666666542 157999999999999999999
No 180
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.42 E-value=0.00051 Score=83.10 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTLG 289 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iG 289 (752)
..++|+||+|+||||+++.++
T Consensus 192 ~~vlL~G~pG~GKT~la~~la 212 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLA 212 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHH
Confidence 357999999999999999993
No 181
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.41 E-value=5.3e-05 Score=74.63 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.0
Q ss_pred EEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 263 KVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 263 ~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
++.+| .+++|+|||||||||+++.+
T Consensus 2 ~i~~g-~~i~l~G~~GsGKSTl~~~L 26 (207)
T 2j41_A 2 DNEKG-LLIVLSGPSGVGKGTVRKRI 26 (207)
T ss_dssp --CCC-CEEEEECSTTSCHHHHHHHH
T ss_pred CCCCC-CEEEEECCCCCCHHHHHHHH
Confidence 46778 89999999999999999999
No 182
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.35 E-value=9.5e-05 Score=82.28 Aligned_cols=40 Identities=20% Similarity=0.399 Sum_probs=32.0
Q ss_pred EEEcccccccCCeeEeeeEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 244 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 244 l~~~~ls~~y~~~~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
+.+.|+ ++|++.. ++.+..+ .+++|+||||+||||+|++|
T Consensus 7 l~~~~~-~~~~~~~---~~~~~~~-~~~~i~G~nG~GKstll~ai 46 (430)
T 1w1w_A 7 LELSNF-KSYRGVT---KVGFGES-NFTSIIGPNGSGKSNMMDAI 46 (430)
T ss_dssp EEEESC-SSCCSEE---EEECTTC-SEEEEECSTTSSHHHHHHHH
T ss_pred EEEeCE-EEECCce---eEEecCC-CEEEEECCCCCCHHHHHHHH
Confidence 567777 6786532 3556666 79999999999999999999
No 183
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.34 E-value=5.3e-06 Score=96.58 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=32.2
Q ss_pred ccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 248 SLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 248 ~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
+++..||...+ .+++.+..| ..++|+||||+|||||+++|
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g-~~vll~Gp~GtGKTtlar~i 80 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQK-RHVLLIGEPGTGKSMLGQAM 80 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHH
T ss_pred ccceEECchhhHhhccccccCC-CEEEEEeCCCCCHHHHHHHH
Confidence 34444554444 778888888 89999999999999999999
No 184
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.32 E-value=0.0014 Score=70.20 Aligned_cols=29 Identities=31% Similarity=0.469 Sum_probs=25.5
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
+++|.+.++ ++++|+||||+||||++..+
T Consensus 97 ~l~~~~~~~-~vI~ivG~~G~GKTT~~~~L 125 (320)
T 1zu4_A 97 RIDFKENRL-NIFMLVGVNGTGKTTSLAKM 125 (320)
T ss_dssp CCCCCTTSC-EEEEEESSTTSSHHHHHHHH
T ss_pred CccccCCCC-eEEEEECCCCCCHHHHHHHH
Confidence 456666777 89999999999999999999
No 185
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.31 E-value=0.00066 Score=70.95 Aligned_cols=101 Identities=18% Similarity=0.237 Sum_probs=54.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhhhhhhce-eecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHH-HHHHHHHcc
Q 004463 269 RVVVITGPNTGGKTASMKTLGLASLMSKAGL-YLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV 346 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~-~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~i~~la 346 (752)
..++|+||+|+||||+++.++-. .+. ++.-.. ..+ ...... +++.. +..+..+..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~-----~~~~~~~i~~-~~l---------------~~~~~~--~~~~~~~~~~~~~~~ 111 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE-----CSATFLNISA-ASL---------------TSKYVG--DGEKLVRALFAVARH 111 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH-----TTCEEEEEES-TTT---------------SSSSCS--CHHHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH-----hCCCeEEeeH-HHH---------------hhcccc--hHHHHHHHHHHHHHH
Confidence 57899999999999999999221 121 111111 000 000011 12222 444444556
Q ss_pred CCCcEEEEeCCCCCCChHhH------HHHHHHHHHHHhc-------CCcEEEEEecchh
Q 004463 347 SRESLVLIDEIGSGTDPSEG------VALATSILQYLRD-------RVGLAVVTTHYAD 392 (752)
Q Consensus 347 ~~~~LlLLDEp~~glD~~~~------~~L~~all~~l~~-------~~~tviitTH~~~ 392 (752)
..|.+|+|||+.+.++.... ..+...++..+.. .+..+|.+|+..+
T Consensus 112 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 112 MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 78999999999877654321 2222234433332 1345778888764
No 186
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.29 E-value=0.0007 Score=72.12 Aligned_cols=127 Identities=17% Similarity=0.160 Sum_probs=71.0
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHHhhhhhh-----------------hhceeecCCCCCCchHHHHHHHHcCCchh-h
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLGLASLMS-----------------KAGLYLPAKNHPRLPWFDLILADIGDHQS-L 325 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~a-----------------q~G~~vP~~~~~~l~~~d~i~~~ig~~~~-i 325 (752)
+++| .++.|.||+|+|||||+..+.....+. ...+|+..+......-+..++..+|.... +
T Consensus 95 l~~g-~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 95 LESQ-SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp EETT-EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred ccCC-eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 4678 899999999999999999985443222 12245555542122223344555665321 0
Q ss_pred hcC---cccchHHHH-H-HHHHHHcc---CCCcEEEEeCCCCCCC--------hHhH----HHHHHHHHHHHhcCCcEEE
Q 004463 326 EQN---LSTFSGHIS-R-IVDILELV---SRESLVLIDEIGSGTD--------PSEG----VALATSILQYLRDRVGLAV 385 (752)
Q Consensus 326 ~~~---~stlSgg~k-r-l~~i~~la---~~~~LlLLDEp~~glD--------~~~~----~~L~~all~~l~~~~~tvi 385 (752)
..+ ...++..+. . +..+..++ .++++|++|..+.-.. ..++ ..+...+.....+.+++||
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi 253 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVL 253 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 011 122333332 2 22222222 5789999999986432 1222 3334445555566788999
Q ss_pred EEecch
Q 004463 386 VTTHYA 391 (752)
Q Consensus 386 itTH~~ 391 (752)
++.|-.
T Consensus 254 ~~nq~~ 259 (322)
T 2i1q_A 254 VTNQVS 259 (322)
T ss_dssp EEECEE
T ss_pred EECcee
Confidence 988853
No 187
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.29 E-value=0.00023 Score=71.20 Aligned_cols=92 Identities=15% Similarity=0.232 Sum_probs=50.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhhhh-hhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHHHHHHHHHccC
Q 004463 269 RVVVITGPNTGGKTASMKTLGLASLMS-KAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVS 347 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iGli~~~a-q~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~krl~~i~~la~ 347 (752)
..++|+||+|+||||+++.++-..... ....++..... ...... +.....
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~------------------~~~~~~-----------~~~~~~ 103 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH------------------ASISTA-----------LLEGLE 103 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG------------------GGSCGG-----------GGTTGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH------------------HHHHHH-----------HHHhcc
Confidence 689999999999999999993221110 01112221110 000000 011235
Q ss_pred CCcEEEEeCCCCCCChH-hHHHHHHHHHHHHhcCCcE-EEEEecc
Q 004463 348 RESLVLIDEIGSGTDPS-EGVALATSILQYLRDRVGL-AVVTTHY 390 (752)
Q Consensus 348 ~~~LlLLDEp~~glD~~-~~~~L~~all~~l~~~~~t-viitTH~ 390 (752)
.+.+|++||+..-.... ....|.. +++.+.+.+.. +|++|+.
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~-~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFD-LYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHH-HHHHHHHHCSCEEEEEESS
T ss_pred CCCEEEEeccccccCCHHHHHHHHH-HHHHHHHcCCCeEEEEcCC
Confidence 78999999976643322 2444555 55555554544 7787775
No 188
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.24 E-value=1.7e-05 Score=91.27 Aligned_cols=40 Identities=18% Similarity=0.349 Sum_probs=29.1
Q ss_pred cccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 247 GSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 247 ~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
+++.+.|+...+ .+++.+ +| ..++|+||||+|||||+|++
T Consensus 87 ~~vk~~i~~~~~l~~~~~~~-~g-~~vll~Gp~GtGKTtlar~i 128 (543)
T 3m6a_A 87 EKVKERILEYLAVQKLTKSL-KG-PILCLAGPPGVGKTSLAKSI 128 (543)
T ss_dssp HHHHHHHHHHHHHHHHSSSC-CS-CEEEEESSSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccC-CC-CEEEEECCCCCCHHHHHHHH
Confidence 455555543322 444555 56 79999999999999999999
No 189
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.22 E-value=0.0037 Score=68.14 Aligned_cols=122 Identities=14% Similarity=0.135 Sum_probs=65.8
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHHhhhh-hhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHHHHHHH
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDI 342 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~-~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~krl~~i 342 (752)
+++| .++.|.||.|+|||||.-.+..... .....+|+..+.... +. ....+|....--.-....+..+ -+..+
T Consensus 71 l~~G-~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~-~~---~a~~~g~d~~~l~i~~~~~~e~-~l~~l 144 (366)
T 1xp8_A 71 IPRG-RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD-PV---YARALGVNTDELLVSQPDNGEQ-ALEIM 144 (366)
T ss_dssp EETT-SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC-HH---HHHHTTCCGGGCEEECCSSHHH-HHHHH
T ss_pred ccCC-cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChh-HH---HHHHcCCCHHHceeecCCcHHH-HHHHH
Confidence 4678 8999999999999999988833222 222345666654222 21 2445554321000001112222 22222
Q ss_pred HH--ccCCCcEEEEeCCCCCCC-h--H---------hH-HHHHH---HHHHHHhcCCcEEEEEecch
Q 004463 343 LE--LVSRESLVLIDEIGSGTD-P--S---------EG-VALAT---SILQYLRDRVGLAVVTTHYA 391 (752)
Q Consensus 343 ~~--la~~~~LlLLDEp~~glD-~--~---------~~-~~L~~---all~~l~~~~~tviitTH~~ 391 (752)
.. ....+++|++|.++.-.. . . .. ..+.. .+.....+.+++||+++|-.
T Consensus 145 ~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~ 211 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVR 211 (366)
T ss_dssp HHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC-
T ss_pred HHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecc
Confidence 22 236789999999987652 1 0 11 11222 23333356788999998864
No 190
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.19 E-value=0.00039 Score=73.87 Aligned_cols=101 Identities=14% Similarity=0.201 Sum_probs=53.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhhh-hhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHHHHHHHHHccC
Q 004463 269 RVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVS 347 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iGli~~~-aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~krl~~i~~la~ 347 (752)
..++|+||+|+|||||++.++-.... .....++.+.. +...+...+. ... +........
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~-----~~~~~~~~~~-----~~~----------~~~~~~~~~ 97 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD-----FAQAMVEHLK-----KGT----------INEFRNMYK 97 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH-----HHHHHHHHHH-----HTC----------HHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH-----HHHHHHHHHH-----cCc----------HHHHHHHhc
Confidence 46899999999999999999322111 00111222110 1111111110 000 001111123
Q ss_pred CCcEEEEeCCCCCC-ChHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 004463 348 RESLVLIDEIGSGT-DPSEGVALATSILQYLRDRVGLAVVTTHY 390 (752)
Q Consensus 348 ~~~LlLLDEp~~gl-D~~~~~~L~~all~~l~~~~~tviitTH~ 390 (752)
++.+|+|||+..-. ++.....+.. +++.+.+.+..+|++|+.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~-~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFH-IFNTLYLLEKQIILASDR 140 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHH-HHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEcCcccccCChHHHHHHHH-HHHHHHHCCCeEEEEecC
Confidence 58999999997633 2345555655 556566667777777764
No 191
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.18 E-value=0.00072 Score=72.38 Aligned_cols=105 Identities=17% Similarity=0.232 Sum_probs=56.6
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHHHHHHHH
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDIL 343 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~krl~~i~ 343 (752)
+++| .+++|.||.|+|||||...++.. .....+|+.......+..+ + . .....+..+.
T Consensus 120 i~~g-sviLI~GpPGsGKTtLAlqlA~~--~G~~VlyIs~~~eE~v~~~----------~------~---~le~~l~~i~ 177 (331)
T 2vhj_A 120 RYAS-GMVIVTGKGNSGKTPLVHALGEA--LGGKDKYATVRFGEPLSGY----------N------T---DFNVFVDDIA 177 (331)
T ss_dssp EEES-EEEEEECSCSSSHHHHHHHHHHH--HHTTSCCEEEEBSCSSTTC----------B------C---CHHHHHHHHH
T ss_pred CCCC-cEEEEEcCCCCCHHHHHHHHHHh--CCCCEEEEEecchhhhhhh----------h------c---CHHHHHHHHH
Confidence 4566 67899999999999999999543 2222244444110011100 0 1 1111222222
Q ss_pred HccCCCcEEEEeCCCCCCChHh-----------HHHHHHHHHHHHhcCCcEEEEEecc
Q 004463 344 ELVSRESLVLIDEIGSGTDPSE-----------GVALATSILQYLRDRVGLAVVTTHY 390 (752)
Q Consensus 344 ~la~~~~LlLLDEp~~glD~~~-----------~~~L~~all~~l~~~~~tviitTH~ 390 (752)
..+.+.++|++||.++=..... ...+...+...+.+.++++|++|+-
T Consensus 178 ~~l~~~~LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp 235 (331)
T 2vhj_A 178 RAMLQHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (331)
T ss_dssp HHHHHCSEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred HHHhhCCEEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 2222223999999987533222 2233444555556678999999884
No 192
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.17 E-value=6.8e-05 Score=74.27 Aligned_cols=29 Identities=21% Similarity=0.180 Sum_probs=24.4
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
...+...+| .+++|+|||||||||+++.+
T Consensus 17 ~~~~~~~~g-~~i~l~G~sGsGKSTl~~~L 45 (200)
T 3uie_A 17 RQRLLDQKG-CVIWVTGLSGSGKSTLACAL 45 (200)
T ss_dssp HHHHHTSCC-EEEEEECSTTSSHHHHHHHH
T ss_pred HHHhcCCCC-eEEEEECCCCCCHHHHHHHH
Confidence 334444678 89999999999999999999
No 193
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.16 E-value=0.00018 Score=70.03 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.6
Q ss_pred cCceEEEEEcCCCCCHHHHHHHH
Q 004463 266 CETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 266 ~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
.| ++++|+||||||||||++.+
T Consensus 4 ~g-~~i~i~GpsGsGKSTL~~~L 25 (180)
T 1kgd_A 4 MR-KTLVLLGAHGVGRRHIKNTL 25 (180)
T ss_dssp CC-CEEEEECCTTSSHHHHHHHH
T ss_pred CC-CEEEEECCCCCCHHHHHHHH
Confidence 46 79999999999999999999
No 194
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.13 E-value=0.00015 Score=74.79 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=27.6
Q ss_pred ccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhh---ceeecCCC
Q 004463 265 ECETRVVVITGPNTGGKTASMKTLGLASLMSKA---GLYLPAKN 305 (752)
Q Consensus 265 ~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~---G~~vP~~~ 305 (752)
.+| .+++|+|||||||||++|++ + |++.|..+
T Consensus 25 ~~g-~~I~I~G~~GsGKSTl~k~L--------a~~Lg~~~~d~g 59 (252)
T 4e22_A 25 AIA-PVITVDGPSGAGKGTLCKAL--------AESLNWRLLDSG 59 (252)
T ss_dssp TTS-CEEEEECCTTSSHHHHHHHH--------HHHTTCEEEEHH
T ss_pred CCC-cEEEEECCCCCCHHHHHHHH--------HHhcCCCcCCCC
Confidence 456 89999999999999999999 5 87777654
No 195
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.10 E-value=0.00026 Score=67.26 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=22.4
Q ss_pred eEEEccCceEEEEEcCCCCCHHHHHHHHH
Q 004463 261 DIKVECETRVVVITGPNTGGKTASMKTLG 289 (752)
Q Consensus 261 dl~l~~g~~~~~I~GpNGsGKSTlLK~iG 289 (752)
++.+.+| +.+|+||||+||||+|.+|.
T Consensus 18 ~i~f~~g--~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 18 VVEFKEG--INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEECCSE--EEEEECCTTSSHHHHHHHHH
T ss_pred EEEcCCC--eEEEECCCCCCHHHHHHHHH
Confidence 4445554 89999999999999999994
No 196
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.08 E-value=0.00023 Score=70.35 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=21.1
Q ss_pred EEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 262 IKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 262 l~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
+...+| .+++|+|||||||||++|++
T Consensus 24 m~~~~g-~~i~l~G~~GsGKSTl~~~L 49 (200)
T 4eun_A 24 MTGEPT-RHVVVMGVSGSGKTTIAHGV 49 (200)
T ss_dssp ----CC-CEEEEECCTTSCHHHHHHHH
T ss_pred hcCCCC-cEEEEECCCCCCHHHHHHHH
Confidence 444567 89999999999999999999
No 197
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.08 E-value=8.6e-05 Score=84.68 Aligned_cols=38 Identities=16% Similarity=0.327 Sum_probs=31.0
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCC
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKN 305 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~ 305 (752)
.+++.+..| ..++|+|||||||||||+++ +|+..|..+
T Consensus 252 ~l~~~v~~g-~~i~I~GptGSGKTTlL~aL--------~~~i~~~~g 289 (511)
T 2oap_1 252 YLWLAIEHK-FSAIVVGETASGKTTTLNAI--------MMFIPPDAK 289 (511)
T ss_dssp HHHHHHHTT-CCEEEEESTTSSHHHHHHHH--------GGGSCTTCC
T ss_pred HHHHHHhCC-CEEEEECCCCCCHHHHHHHH--------HhhCCCCCC
Confidence 567778888 78999999999999999999 665544443
No 198
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.06 E-value=0.00055 Score=77.14 Aligned_cols=21 Identities=33% Similarity=0.311 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTLG 289 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iG 289 (752)
.-++|+||+|+||||+.+.++
T Consensus 202 ~~~LL~G~pG~GKT~la~~la 222 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLA 222 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHH
Confidence 357899999999999999993
No 199
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.04 E-value=0.0013 Score=70.06 Aligned_cols=120 Identities=13% Similarity=0.070 Sum_probs=68.1
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHHhhhhhh-hhceeecCCCCCCchHHHHHHHHc-CCc-hhhhcCcccchHHHH-HH
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLGLASLMS-KAGLYLPAKNHPRLPWFDLILADI-GDH-QSLEQNLSTFSGHIS-RI 339 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~a-q~G~~vP~~~~~~l~~~d~i~~~i-g~~-~~i~~~~stlSgg~k-rl 339 (752)
+.+| ++++|.|+.|+|||||+..+....... ...+|+..+. ..-.+..+++... +.. ..+...-..||.++. ++
T Consensus 65 l~~G-~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~-s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~l 142 (315)
T 3bh0_A 65 YKRR-NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM-GKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKL 142 (315)
T ss_dssp BCTT-CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSS-CHHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCHHHH
T ss_pred CCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCC-CHHHHHHHHHHHHcCCCHHHHhcCCCCCCHHHHHHH
Confidence 4678 899999999999999999884433221 2234444332 2222344444322 222 112221122776665 77
Q ss_pred HHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcE--EEEEecc
Q 004463 340 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGL--AVVTTHY 390 (752)
Q Consensus 340 ~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~t--viitTH~ 390 (752)
..+...+..+.+++.|+|+ +++.+ |...+.+...+.+.. +|++-|.
T Consensus 143 ~~a~~~l~~~~i~i~d~~~--~~~~~---i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 143 SMAIGEISNSNINIFDKAG--QSVNY---IWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HHHHHHHHTSCEEEECCSC--CBHHH---HHHHHHHHHHTSSSCCEEEEEECG
T ss_pred HHHHHHHhCCCEEEECCCC--CCHHH---HHHHHHHHHHhcCCCCeEEEEeCc
Confidence 7776666678899999886 44433 333232323334556 7777664
No 200
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.02 E-value=0.0019 Score=63.75 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..++|+||.|+||||+++.+
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~ 65 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLL 65 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 201
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.00 E-value=0.00098 Score=71.60 Aligned_cols=119 Identities=17% Similarity=0.080 Sum_probs=61.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhh-hhh---hhc---eeecCCCC-CCchHHHHHHHHcCCchhhhcCcccchHHH-H-H
Q 004463 269 RVVVITGPNTGGKTASMKTLGLAS-LMS---KAG---LYLPAKNH-PRLPWFDLILADIGDHQSLEQNLSTFSGHI-S-R 338 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iGli~-~~a---q~G---~~vP~~~~-~~l~~~d~i~~~ig~~~~i~~~~stlSgg~-k-r 338 (752)
..++|+||.|+||||+++.+.-.. -.. ..+ .++.+... ....++..++..++... +....+.+. . +
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~ 120 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRV----PFTGLSVGEVYER 120 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCC----CSSCCCHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCC----CCCCCCHHHHHHH
Confidence 578999999999999999993221 110 002 12222221 12234566666665421 111222222 2 3
Q ss_pred HHHHHHccCCCcEEEEeCCCCCCChH-hHHHHHHHHHHHHh----cCCcEEEEEecchh
Q 004463 339 IVDILELVSRESLVLIDEIGSGTDPS-EGVALATSILQYLR----DRVGLAVVTTHYAD 392 (752)
Q Consensus 339 l~~i~~la~~~~LlLLDEp~~glD~~-~~~~L~~all~~l~----~~~~tviitTH~~~ 392 (752)
+...+.....|.+|+|||+-.-.+.. ....|.. +++... ..+.++|++|+...
T Consensus 121 l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~-l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 121 LVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYR-ITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHH-HHHGGGCC-----CEEEEECSCST
T ss_pred HHHHHhccCCeEEEEEccHhhhcccCCCChHHHh-HhhchhhcCCCceEEEEEEECCCc
Confidence 33333334457799999997654331 2233333 555433 33557888998864
No 202
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.00 E-value=0.00031 Score=69.37 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=21.4
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
++||.+.++ .+++|+||+||||||+.+.+
T Consensus 17 ~~~~~~~~~-~~i~l~G~~GsGKsTl~~~L 45 (199)
T 3vaa_A 17 NLYFQSNAM-VRIFLTGYMGAGKTTLGKAF 45 (199)
T ss_dssp -------CC-CEEEEECCTTSCHHHHHHHH
T ss_pred ceeEecCCC-CEEEEEcCCCCCHHHHHHHH
Confidence 788999998 89999999999999999999
No 203
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.99 E-value=0.00089 Score=70.73 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.1
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHH
Q 004463 264 VECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
+..+ ..++|+||+|+||||+++.+
T Consensus 46 ~~~~-~~vLL~Gp~GtGKT~la~al 69 (301)
T 3cf0_A 46 MTPS-KGVLFYGPPGCGKTLLAKAI 69 (301)
T ss_dssp CCCC-SEEEEECSSSSSHHHHHHHH
T ss_pred CCCC-ceEEEECCCCcCHHHHHHHH
Confidence 3455 67999999999999999999
No 204
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.99 E-value=0.00029 Score=74.72 Aligned_cols=33 Identities=9% Similarity=0.082 Sum_probs=27.3
Q ss_pred ccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCC
Q 004463 265 ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 306 (752)
Q Consensus 265 ~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~ 306 (752)
..| ++++|+||||+||||||++| .|+..|..|.
T Consensus 167 l~g-eiv~l~G~sG~GKSTll~~l--------~g~~~~~~G~ 199 (301)
T 1u0l_A 167 LKG-KISTMAGLSGVGKSSLLNAI--------NPGLKLRVSE 199 (301)
T ss_dssp HSS-SEEEEECSTTSSHHHHHHHH--------STTCCCC---
T ss_pred hcC-CeEEEECCCCCcHHHHHHHh--------cccccccccc
Confidence 457 89999999999999999999 8888887764
No 205
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.99 E-value=0.001 Score=67.49 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.4
Q ss_pred ccCceEEEEEcCCCCCHHHHHHHH
Q 004463 265 ECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 265 ~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
..| +.++|+||+||||||++..+
T Consensus 74 ~~g-~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 74 SQN-SVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp HHC-SEEEEECCTTSSHHHHHHHH
T ss_pred hcC-CEEEEEeCCCCCcHHhHHHH
Confidence 457 78999999999999998877
No 206
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.95 E-value=0.00029 Score=70.29 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=21.3
Q ss_pred ccCceEEEEEcCCCCCHHHHHHHH
Q 004463 265 ECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 265 ~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
.+| .+++|+||||+||||+++.+
T Consensus 6 ~~g-~~i~l~GpsGsGKsTl~~~L 28 (208)
T 3tau_A 6 ERG-LLIVLSGPSGVGKGTVREAV 28 (208)
T ss_dssp CCC-CEEEEECCTTSCHHHHHHHH
T ss_pred CCC-cEEEEECcCCCCHHHHHHHH
Confidence 357 89999999999999999999
No 207
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.95 E-value=0.00043 Score=75.39 Aligned_cols=30 Identities=30% Similarity=0.305 Sum_probs=26.5
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHHHh
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTLGL 290 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGl 290 (752)
+++|++.+| +++|+||||+||||+|++|..
T Consensus 19 ~~~~~~~~g--~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 19 PGTLNFPEG--VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SEEEECCSE--EEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEcCC--eEEEECCCCCChhHHHHHHHH
Confidence 678888877 899999999999999999943
No 208
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.93 E-value=0.00021 Score=76.15 Aligned_cols=101 Identities=18% Similarity=0.190 Sum_probs=51.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhhhhhhce---eecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHHHHHHHHHc
Q 004463 269 RVVVITGPNTGGKTASMKTLGLASLMSKAGL---YLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILEL 345 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~---~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~krl~~i~~l 345 (752)
..+.|.||.|+|||+|++.++..... +.|. ++... .+++.+...+... . ...+ +..
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~~-----~l~~~l~~~~~~~-~----~~~~----------~~~ 211 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHFP-----SFAIDVKNAISNG-S----VKEE----------IDA 211 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEHH-----HHHHHHHCCCC---------CCT----------THH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEHH-----HHHHHHHHHhccc-h----HHHH----------HHH
Confidence 67899999999999999999543220 1221 11110 1122221111110 0 0011 111
Q ss_pred cCCCcEEEEeCCCCC-CChHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 004463 346 VSRESLVLIDEIGSG-TDPSEGVALATSILQYLRDRVGLAVVTTHY 390 (752)
Q Consensus 346 a~~~~LlLLDEp~~g-lD~~~~~~L~~all~~l~~~~~tviitTH~ 390 (752)
+.+++||+|||++.. +++.....|...+++.....+..+|+||+.
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~ 257 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNY 257 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESS
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 235689999999653 344334435444666543345678888886
No 209
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.88 E-value=0.00042 Score=78.70 Aligned_cols=40 Identities=15% Similarity=0.269 Sum_probs=29.3
Q ss_pred EcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 246 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 246 ~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
++++...|.+..+ ++++.++.| ++|+||||+|||||+|+|
T Consensus 43 l~~lv~~l~~~~~~~~lg~~ip~G---vLL~GppGtGKTtLaraI 84 (499)
T 2dhr_A 43 LKEIVEFLKNPSRFHEMGARIPKG---VLLVGPPGVGKTHLARAV 84 (499)
T ss_dssp HHHHHHHHHCGGGTTTTSCCCCSE---EEEECSSSSSHHHHHHHH
T ss_pred HHHHHHHhhchhhhhhccCCCCce---EEEECCCCCCHHHHHHHH
Confidence 4455554543222 566777766 899999999999999999
No 210
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.85 E-value=0.0029 Score=64.66 Aligned_cols=19 Identities=37% Similarity=0.534 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
-++|+||+|+||||+++.+
T Consensus 47 ~vll~G~~GtGKT~la~~l 65 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAI 65 (257)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHH
Confidence 4889999999999999999
No 211
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.80 E-value=0.00075 Score=67.32 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=22.5
Q ss_pred eEEEccCceEEEEEcCCCCCHHHHHHHHH
Q 004463 261 DIKVECETRVVVITGPNTGGKTASMKTLG 289 (752)
Q Consensus 261 dl~l~~g~~~~~I~GpNGsGKSTlLK~iG 289 (752)
++.+.+| +.+|+||||+||||+|.+|.
T Consensus 18 ~i~f~~~--~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 18 VVEFKEG--INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEECCSE--EEEEECCTTSSHHHHHHHHH
T ss_pred EEEeCCC--eEEEEcCCCCCHHHHHHHHH
Confidence 4555554 89999999999999999993
No 212
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.80 E-value=0.00083 Score=80.74 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=23.0
Q ss_pred EEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 262 IKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 262 l~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
+.+..+ +.++|+||||+|||||++++
T Consensus 233 l~i~~~-~~vLL~Gp~GtGKTtLaral 258 (806)
T 1ypw_A 233 IGVKPP-RGILLYGPPGTGKTLIARAV 258 (806)
T ss_dssp SCCCCC-CEEEECSCTTSSHHHHHHHH
T ss_pred cCCCCC-CeEEEECcCCCCHHHHHHHH
Confidence 345677 78999999999999999999
No 213
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.78 E-value=0.00066 Score=72.05 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=27.5
Q ss_pred ccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCC
Q 004463 265 ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP 307 (752)
Q Consensus 265 ~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~ 307 (752)
..| ++++|+||||+||||||+++ . ...|..|..
T Consensus 163 l~G-~i~~l~G~sG~GKSTLln~l--------~-~~~~~~G~i 195 (302)
T 2yv5_A 163 LEG-FICILAGPSGVGKSSILSRL--------T-GEELRTQEV 195 (302)
T ss_dssp TTT-CEEEEECSTTSSHHHHHHHH--------H-SCCCCCSCC
T ss_pred ccC-cEEEEECCCCCCHHHHHHHH--------H-HhhCccccc
Confidence 357 89999999999999999999 6 666776643
No 214
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.77 E-value=0.00015 Score=77.29 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=24.9
Q ss_pred EEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCC
Q 004463 262 IKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 306 (752)
Q Consensus 262 l~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~ 306 (752)
+.+.+| ++++|+||||+||||||++| .|...|..+.
T Consensus 168 ~~~~~G-~~~~lvG~sG~GKSTLln~L--------~g~~~~~~G~ 203 (307)
T 1t9h_A 168 IPHFQD-KTTVFAGQSGVGKSSLLNAI--------SPELGLRTNE 203 (307)
T ss_dssp GGGGTT-SEEEEEESHHHHHHHHHHHH--------CC--------
T ss_pred HhhcCC-CEEEEECCCCCCHHHHHHHh--------cccccccccc
Confidence 345678 89999999999999999999 8877776663
No 215
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.75 E-value=0.0044 Score=68.93 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=29.4
Q ss_pred ccccccCCeeEeeeEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 248 SLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 248 ~ls~~y~~~~v~idl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
+|++.|++..-++++. ++ .+++|+||||+||||++..+
T Consensus 81 ~L~~~~~~~~~~i~l~--~~-~vi~i~G~~GsGKTT~~~~L 118 (425)
T 2ffh_A 81 ALKEALGGEARLPVLK--DR-NLWFLVGLQGSGKTTTAAKL 118 (425)
T ss_dssp HHHHHTTSSCCCCCCC--SS-EEEEEECCTTSSHHHHHHHH
T ss_pred HHHHHhCCCcccccCC--CC-eEEEEECCCCCCHHHHHHHH
Confidence 4566666543355665 66 89999999999999999999
No 216
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.75 E-value=0.00071 Score=64.94 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=20.6
Q ss_pred cCceEEEEEcCCCCCHHHHHHHH
Q 004463 266 CETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 266 ~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
+| .+++|+|||||||||+++.+
T Consensus 7 ~g-~~i~l~G~~GsGKSTl~~~l 28 (175)
T 1knq_A 7 DH-HIYVLMGVSGSGKSAVASEV 28 (175)
T ss_dssp TS-EEEEEECSTTSCHHHHHHHH
T ss_pred CC-cEEEEEcCCCCCHHHHHHHH
Confidence 46 79999999999999999999
No 217
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.74 E-value=0.012 Score=62.78 Aligned_cols=123 Identities=14% Similarity=0.167 Sum_probs=68.4
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHHhhhhh---hhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHHHHH
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLGLASLM---SKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIV 340 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~---aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~krl~ 340 (752)
+++| ++.|.||.|+|||||+-.+..-... ....+|+-.++... + ....++|.+..----....++++..+.
T Consensus 26 l~~G--iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~-~---~ra~~lGvd~d~llv~~~~~~E~~~l~ 99 (333)
T 3io5_A 26 MQSG--LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGIT-P---AYLRSMGVDPERVIHTPVQSLEQLRID 99 (333)
T ss_dssp BCSE--EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCC-H---HHHHHTTCCGGGEEEEECSBHHHHHHH
T ss_pred CcCC--eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhh-H---HHHHHhCCCHHHeEEEcCCCHHHHHHH
Confidence 3566 6899999999999997776222111 22335766665332 2 235677764221111122244443233
Q ss_pred HHHH----ccCCCcEEEEeCCCCCCC-------h--------HhHHHHHHH---HHHHHhcCCcEEEEEecchh
Q 004463 341 DILE----LVSRESLVLIDEIGSGTD-------P--------SEGVALATS---ILQYLRDRVGLAVVTTHYAD 392 (752)
Q Consensus 341 ~i~~----la~~~~LlLLDEp~~glD-------~--------~~~~~L~~a---ll~~l~~~~~tviitTH~~~ 392 (752)
++.. ....|+||++|=.++-.. + .....+..+ +..++.+.++++|+|-|-..
T Consensus 100 i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 100 MVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp HHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC--
T ss_pred HHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeee
Confidence 3322 235799999999887752 1 011122222 34456778999999999865
No 218
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.71 E-value=0.00046 Score=73.99 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=28.4
Q ss_pred cccccCCeeE--eeeEEEccCceE--EEEEcCCCCCHHHHHHHH
Q 004463 249 LSKGISDFPV--PIDIKVECETRV--VVITGPNTGGKTASMKTL 288 (752)
Q Consensus 249 ls~~y~~~~v--~idl~l~~g~~~--~~I~GpNGsGKSTlLK~i 288 (752)
++..||...+ .+...+..| ++ ++|+||||+||||+++++
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g-~~~~~ll~Gp~G~GKTtla~~l 66 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEG-KLPHLLFYGPPGTGKTSTIVAL 66 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTT-CCCCEEEECSSSSSHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHH
Confidence 3334443333 555556677 66 999999999999999999
No 219
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.68 E-value=0.00066 Score=64.88 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+|||||||||+++.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~L 24 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQL 24 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 67999999999999999999
No 220
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.66 E-value=0.002 Score=67.54 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTLG 289 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iG 289 (752)
..++|+||+|+||||+.+.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la 68 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLA 68 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHH
Confidence 478999999999999999993
No 221
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.66 E-value=0.0042 Score=64.27 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..++|+||.|+||||+++.+
T Consensus 52 ~~~ll~G~~GtGKT~la~~l 71 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAV 71 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 56899999999999999999
No 222
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.65 E-value=0.00067 Score=67.19 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=21.4
Q ss_pred ccCceEEEEEcCCCCCHHHHHHHH
Q 004463 265 ECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 265 ~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
.++ .+++|+|||||||||+++.+
T Consensus 20 ~~~-~~i~i~G~~GsGKstl~~~l 42 (201)
T 1rz3_A 20 AGR-LVLGIDGLSRSGKTTLANQL 42 (201)
T ss_dssp SSS-EEEEEEECTTSSHHHHHHHH
T ss_pred CCC-eEEEEECCCCCCHHHHHHHH
Confidence 566 89999999999999999999
No 223
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.64 E-value=0.0007 Score=68.59 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=21.6
Q ss_pred ccCceEEEEEcCCCCCHHHHHHHH
Q 004463 265 ECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 265 ~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
.+| .+++|.|||||||||+++++
T Consensus 18 ~~g-~~i~i~G~~GsGKSTl~~~L 40 (230)
T 2vp4_A 18 TQP-FTVLIEGNIGSGKTTYLNHF 40 (230)
T ss_dssp CCC-EEEEEECSTTSCHHHHHHTT
T ss_pred CCc-eEEEEECCCCCCHHHHHHHH
Confidence 567 89999999999999999999
No 224
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.64 E-value=0.00075 Score=68.45 Aligned_cols=45 Identities=16% Similarity=0.057 Sum_probs=29.5
Q ss_pred HccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhc--CCcEEEEEec
Q 004463 344 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD--RVGLAVVTTH 389 (752)
Q Consensus 344 ~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~--~~~tviitTH 389 (752)
.....++++|+..+.+..+..+...+.. +++.+.. ...++|+.||
T Consensus 108 ~~~~~~~~~l~v~d~~~~~~~~~~~l~~-~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 108 LTSPGPHALLLVVPLGRYTEEEHKATEK-ILKMFGERARSFMILIFTR 154 (239)
T ss_dssp HTTTCCSEEEEEEETTCCSSHHHHHHHH-HHHHHHHHHGGGEEEEEEC
T ss_pred hcCCCCcEEEEEeeCCCCCHHHHHHHHH-HHHHhhhhccceEEEEEeC
Confidence 3456788888888887777766555544 5444332 1257888888
No 225
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.63 E-value=0.0028 Score=66.69 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..++|.||.|+|||++.+.+
T Consensus 37 ~~lLl~GppGtGKT~la~ai 56 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELV 56 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46888999999999999999
No 226
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.57 E-value=0.0051 Score=65.10 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=29.3
Q ss_pred ccccccCCeeEe-eeEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 248 SLSKGISDFPVP-IDIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 248 ~ls~~y~~~~v~-idl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
++++.|++...+ +++... + .+++++||||+||||++..+
T Consensus 79 ~l~~~~~~~~~~~i~~~~~-~-~vi~i~G~~G~GKTT~~~~l 118 (297)
T 1j8m_F 79 ELSNLFGGDKEPKVIPDKI-P-YVIMLVGVQGTGKTTTAGKL 118 (297)
T ss_dssp HHHHHTTCSCCCCCSCSSS-S-EEEEEECSSCSSTTHHHHHH
T ss_pred HHHHHhccccccccccCCC-C-eEEEEECCCCCCHHHHHHHH
Confidence 455556544334 566554 6 89999999999999999998
No 227
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.57 E-value=0.0011 Score=67.53 Aligned_cols=123 Identities=21% Similarity=0.119 Sum_probs=63.0
Q ss_pred cCceEEEEEcCCCCCHHHHHHHHHhhhhhhhhce---eecCCCCCCchHHHHHHHHcCCchhhhcCcccchH---HHHHH
Q 004463 266 CETRVVVITGPNTGGKTASMKTLGLASLMSKAGL---YLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG---HISRI 339 (752)
Q Consensus 266 ~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~---~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSg---g~krl 339 (752)
+|.-.+++.|+-|+||||++-.+|... ++.|. ++-.+.......+.. .-++.. +....-.+.+ .+..+
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l--~~~G~~V~v~d~D~q~~~~~~al---~~gl~~-~~~~~~~~~~~~~~e~~l 77 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQ--LRQGVRVMAGVVETHGRAETEAL---LNGLPQ-QPLLRTEYRGMTLEEMDL 77 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCCTTCHHHHHH---HTTSCB-CCCEEEEETTEEEEECCH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHH--HHCCCCEEEEEeCCCCChhHHHH---hcCccc-cCcceeecCCcccccccH
Confidence 453458899999999999976664332 22342 222222112222221 112221 1101111211 11112
Q ss_pred HHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhh
Q 004463 340 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 396 (752)
Q Consensus 340 ~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~ 396 (752)
..++. ..|+++|+|||+.--.+..+..+....+..+...+..++.|+|-..+..+
T Consensus 78 ~~~L~--~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl 132 (228)
T 2r8r_A 78 DALLK--AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESL 132 (228)
T ss_dssp HHHHH--HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGG
T ss_pred HHHHh--cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccH
Confidence 22222 47999999999964344444444444555566778889999996544443
No 228
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.57 E-value=0.001 Score=66.40 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=21.4
Q ss_pred ccCceEEEEEcCCCCCHHHHHHHH
Q 004463 265 ECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 265 ~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
.+| ++++|+||||+|||||++.+
T Consensus 17 ~~g-~~ivl~GPSGaGKsTL~~~L 39 (197)
T 3ney_A 17 QGR-KTLVLIGASGVGRSHIKNAL 39 (197)
T ss_dssp CSC-CEEEEECCTTSSHHHHHHHH
T ss_pred CCC-CEEEEECcCCCCHHHHHHHH
Confidence 467 89999999999999999998
No 229
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.53 E-value=0.00029 Score=67.29 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..++|+||.|+||||+++.+
T Consensus 44 ~~vll~G~~G~GKT~la~~~ 63 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGL 63 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHH
Confidence 56799999999999999998
No 230
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.51 E-value=0.0019 Score=70.31 Aligned_cols=31 Identities=32% Similarity=0.415 Sum_probs=25.6
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhh
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTLGLA 291 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli 291 (752)
..++.+.+| +.+|+||||+||||+|-.|.++
T Consensus 18 ~~~i~f~~g--l~vi~G~NGaGKT~ileAI~~~ 48 (371)
T 3auy_A 18 NSRIKFEKG--IVAIIGENGSGKSSIFEAVFFA 48 (371)
T ss_dssp EEEEECCSE--EEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEecCCC--eEEEECCCCCCHHHHHHHHHHH
Confidence 456666665 8999999999999999999653
No 231
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.47 E-value=0.00041 Score=66.23 Aligned_cols=20 Identities=35% Similarity=0.356 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..++|+||.|+||||+++.+
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~ 63 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGL 63 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHH
Confidence 56899999999999999998
No 232
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.46 E-value=0.017 Score=73.82 Aligned_cols=122 Identities=17% Similarity=0.210 Sum_probs=65.9
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHHhhhhh-hhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHH-HHHH
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVD 341 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~-aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~ 341 (752)
+.+| ++++|.||+|+|||||+..++..... ....+|+..+... -.. ....+|....--.-...-+..+. ....
T Consensus 729 l~~G-~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~-~ql---~A~~lGvd~~~L~i~~~~~leei~~~l~ 803 (1706)
T 3cmw_A 729 LPMG-RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL-DPI---YARKLGVDIDNLLCSQPDTGEQALEICD 803 (1706)
T ss_dssp EETT-SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC-CHH---HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred cCCC-ceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchH-HHH---HHHHcCCChhheEEecCCcHHHHHHHHH
Confidence 5788 89999999999999999998433222 1123455554422 122 13445532110000111122222 1111
Q ss_pred HHHccCCCcEEEEeCCCCCCC-hH------------hHHHHHH---HHHHHHhcCCcEEEEEecc
Q 004463 342 ILELVSRESLVLIDEIGSGTD-PS------------EGVALAT---SILQYLRDRVGLAVVTTHY 390 (752)
Q Consensus 342 i~~la~~~~LlLLDEp~~glD-~~------------~~~~L~~---all~~l~~~~~tviitTH~ 390 (752)
-+.....|++|++|++..-.. +. ....+.. .+...+.+.+++||+++|-
T Consensus 804 ~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql 868 (1706)
T 3cmw_A 804 ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECE
T ss_pred HHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 112236899999999998662 10 1122322 2333456678999999994
No 233
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.45 E-value=0.0025 Score=74.87 Aligned_cols=42 Identities=14% Similarity=0.044 Sum_probs=30.6
Q ss_pred cCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH
Q 004463 346 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL 393 (752)
Q Consensus 346 a~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l 393 (752)
..+.-++++| ++.|+++.....+ ..+...+..+|++.|..++
T Consensus 97 ~ad~~ilVvD-~~~g~~~qt~~~~-----~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 97 AADAALVAVS-AEAGVQVGTERAW-----TVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp HCSEEEEEEE-TTTCSCHHHHHHH-----HHHHHTTCCEEEEEECGGG
T ss_pred hcCcEEEEEc-CCcccchhHHHHH-----HHHHHccCCEEEEecCCch
Confidence 4577899999 9999998776433 2333447788888988775
No 234
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.41 E-value=0.0032 Score=64.01 Aligned_cols=124 Identities=19% Similarity=0.168 Sum_probs=64.3
Q ss_pred cCceEEEEEcCCCCCHHHHHHHHHhhhh-hh-hhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHHHHHHHH
Q 004463 266 CETRVVVITGPNTGGKTASMKTLGLASL-MS-KAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDIL 343 (752)
Q Consensus 266 ~g~~~~~I~GpNGsGKSTlLK~iGli~~-~a-q~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~krl~~i~ 343 (752)
+| .+++|+||-|+||||++-.+..-.. .. +...+.|... .. + ...+..++|..-.. ..+... ..=+..+.
T Consensus 11 ~G-~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d-~r-~-~~~i~srlG~~~~~-~~~~~~---~~i~~~i~ 82 (223)
T 2b8t_A 11 IG-WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKID-TR-S-IRNIQSRTGTSLPS-VEVESA---PEILNYIM 82 (223)
T ss_dssp CC-EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-GG-G-CSSCCCCCCCSSCC-EEESST---HHHHHHHH
T ss_pred Cc-EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccC-ch-H-HHHHHHhcCCCccc-cccCCH---HHHHHHHH
Confidence 46 7999999999999998766521111 11 1122323332 11 1 11233444432110 011111 11112222
Q ss_pred Hc--cCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecch-----------hHHhhhcccccc
Q 004463 344 EL--VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA-----------DLSCLKDKDTRF 403 (752)
Q Consensus 344 ~l--a~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~-----------~l~~~a~~~~~i 403 (752)
.. ..++++|++||.-. +++. +.. .+..+.+.+..||++-|+. +|..+||.+..+
T Consensus 83 ~~~~~~~~dvViIDEaQ~-l~~~----~ve-~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el 149 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQF-FDDR----ICE-VANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKL 149 (223)
T ss_dssp STTSCTTCCEEEECSGGG-SCTH----HHH-HHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEEC
T ss_pred HHhhCCCCCEEEEecCcc-CcHH----HHH-HHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeec
Confidence 22 24589999999964 5543 222 3344555689999999932 355577776554
No 235
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.41 E-value=0.0015 Score=70.07 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-+++|+||||||||||++++
T Consensus 93 ~iigI~GpsGSGKSTl~~~L 112 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVL 112 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 48999999999999999999
No 236
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.37 E-value=0.012 Score=59.68 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTLG 289 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iG 289 (752)
..++|+||.|+||||+.+.++
T Consensus 40 ~~vll~G~~GtGKT~la~~la 60 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVA 60 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 568999999999999999993
No 237
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.37 E-value=0.0096 Score=62.90 Aligned_cols=64 Identities=9% Similarity=0.107 Sum_probs=39.3
Q ss_pred chHHHHHHHHHHHccCCCcEEEEeCCCCCCChHh-HHHHHHHHHHHHhcC-Cc--EEEEEecchh-HHhhhccc
Q 004463 332 FSGHISRIVDILELVSRESLVLIDEIGSGTDPSE-GVALATSILQYLRDR-VG--LAVVTTHYAD-LSCLKDKD 400 (752)
Q Consensus 332 lSgg~krl~~i~~la~~~~LlLLDEp~~glD~~~-~~~L~~all~~l~~~-~~--tviitTH~~~-l~~~a~~~ 400 (752)
|+.+++.+...+.....|.++++ |.+|... ...+.. .++.+.+. +. .+.+++|+.+ +..+.+..
T Consensus 101 ~~~~~~~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~-~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDEMVLNKLREGKAPVILAV----NKVDNVQEKADLLP-HLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp CCHHHHHHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHH-HHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEE----ECcccCccHHHHHH-HHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 78887766555555578888888 7888876 555555 44445443 43 4556666643 55555443
No 238
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.36 E-value=0.00057 Score=66.59 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
++++|+||||||||||++.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L 22 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRM 22 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
No 239
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.34 E-value=0.021 Score=73.06 Aligned_cols=122 Identities=18% Similarity=0.223 Sum_probs=69.7
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHHhhh-hhhhhceeecCCCCCCchHHHHHHHHcCCch-hhhcCcccchHHHH-HHH
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLGLAS-LMSKAGLYLPAKNHPRLPWFDLILADIGDHQ-SLEQNLSTFSGHIS-RIV 340 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iGli~-~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~-~i~~~~stlSgg~k-rl~ 340 (752)
+++| +++.|.||.|+|||||.-.+.... ......+|+..+.... .. ....+|..- .+. -...-+.++- .+.
T Consensus 380 l~~G-~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~-~~---~a~~lGvd~~~L~-i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 380 LPMG-RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD-PI---YARKLGVDIDNLL-CSQPDTGEQALEIC 453 (1706)
T ss_dssp EETT-SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCC-HH---HHHHTTCCGGGCE-EECCSSHHHHHHHH
T ss_pred cCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchH-HH---HHHHcCCCHHHeE-EcCCCCHHHHHHHH
Confidence 4688 899999999999999988883222 2223445666665322 11 245555431 111 0111123322 222
Q ss_pred HHHHccCCCcEEEEeCCCCCCChH------------hHH----HHHHHHHHHHhcCCcEEEEEecch
Q 004463 341 DILELVSRESLVLIDEIGSGTDPS------------EGV----ALATSILQYLRDRVGLAVVTTHYA 391 (752)
Q Consensus 341 ~i~~la~~~~LlLLDEp~~glD~~------------~~~----~L~~all~~l~~~~~tviitTH~~ 391 (752)
..+.....+++|++|.++.-.... ... .+...+...+.+.++++|+++|-.
T Consensus 454 ~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~ 520 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 520 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEE
T ss_pred HHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 222234689999999998876411 111 222334444567799999999863
No 240
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.33 E-value=0.00086 Score=73.50 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=27.1
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
++++.+++| ++++|+||||+|||||++++
T Consensus 161 ~~~~~i~~~-~~i~l~G~~GsGKSTl~~~l 189 (377)
T 1svm_A 161 CMVYNIPKK-RYWLFKGPIDSGKTTLAAAL 189 (377)
T ss_dssp HHHHCCTTC-CEEEEECSTTSSHHHHHHHH
T ss_pred hcccccCCC-CEEEEECCCCCCHHHHHHHH
Confidence 677888999 89999999999999999999
No 241
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.33 E-value=0.014 Score=59.12 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=21.1
Q ss_pred cCceEEEEEcCCCCCHHHHHHHH
Q 004463 266 CETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 266 ~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
.| .+++|.||+||||||+++.+
T Consensus 25 ~g-~~i~i~G~~GsGKsT~~~~l 46 (229)
T 4eaq_A 25 MS-AFITFEGPEGSGKTTVINEV 46 (229)
T ss_dssp CC-EEEEEECCTTSCHHHHHHHH
T ss_pred CC-eEEEEEcCCCCCHHHHHHHH
Confidence 77 89999999999999999999
No 242
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.30 E-value=0.0072 Score=64.22 Aligned_cols=43 Identities=14% Similarity=0.245 Sum_probs=27.6
Q ss_pred CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchh
Q 004463 347 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 392 (752)
Q Consensus 347 ~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~ 392 (752)
.++.+|++|| ...+++....+|.. +++.... ...+|++|++..
T Consensus 132 ~~~~vliiDE-~~~l~~~~~~~Ll~-~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 132 PPYKIIILDE-ADSMTADAQSALRR-TMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp CSCEEEEETT-GGGSCHHHHHHHHH-HHHHTTT-TEEEEEEESCGG
T ss_pred CCceEEEEEC-CCccCHHHHHHHHH-HHHhcCC-CceEEEEeCchh
Confidence 4567999999 66778877666665 3343222 345667776643
No 243
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.29 E-value=0.019 Score=63.99 Aligned_cols=117 Identities=13% Similarity=0.048 Sum_probs=64.2
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHHhhhhhh--hhceeecCCCCCCchHHHHHHHH-cCCch-hhhcCcccchHHHH-H
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLGLASLMS--KAGLYLPAKNHPRLPWFDLILAD-IGDHQ-SLEQNLSTFSGHIS-R 338 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~a--q~G~~vP~~~~~~l~~~d~i~~~-ig~~~-~i~~~~stlSgg~k-r 338 (752)
+.+| ++++|.||+|+|||||+..+....... ...+|+..+. +.-.+..++++. .+... .+. -..|+.++. +
T Consensus 197 l~~G-~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~-~~~~l~~R~~~~~~~i~~~~l~--~g~l~~~~~~~ 272 (444)
T 2q6t_A 197 LGPG-SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM-PAAQLTLRMMCSEARIDMNRVR--LGQLTDRDFSR 272 (444)
T ss_dssp CCTT-CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS-CHHHHHHHHHHHHTTCCTTTCC--GGGCCHHHHHH
T ss_pred cCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHHHHHcCCCHHHHh--CCCCCHHHHHH
Confidence 5678 899999999999999999885443321 1223444332 222234444432 23221 111 135777766 7
Q ss_pred HHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEec
Q 004463 339 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTH 389 (752)
Q Consensus 339 l~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH 389 (752)
+..+...+...++.+.|.| ++++.+-.+. +.+...+.+..+|++-+
T Consensus 273 ~~~a~~~l~~~~l~i~d~~--~~s~~~l~~~---~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 273 LVDVASRLSEAPIYIDDTP--DLTLMEVRAR---ARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp HHHHHHHHHTSCEEEECCT--TCBHHHHHHH---HHHHHHHSCCCEEEEEC
T ss_pred HHHHHHHHhcCCEEEECCC--CCCHHHHHHH---HHHHHHHcCCCEEEEcC
Confidence 7766555556678888876 3444333222 22222233555555543
No 244
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.27 E-value=0.0018 Score=63.83 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+|||||||||+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 245
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.20 E-value=0.0019 Score=63.87 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.9
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHH
Q 004463 264 VECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
+.++ .+++|+||+||||||+++.+
T Consensus 18 ~~~~-~~i~i~G~~GsGKSTl~~~L 41 (207)
T 2qt1_A 18 GSKT-FIIGISGVTNSGKTTLAKNL 41 (207)
T ss_dssp SCCC-EEEEEEESTTSSHHHHHHHH
T ss_pred CCCC-eEEEEECCCCCCHHHHHHHH
Confidence 4567 89999999999999999999
No 246
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.19 E-value=0.0021 Score=63.18 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
+++|+|||||||||+++.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L 21 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMF 21 (204)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 6899999999999999999
No 247
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.19 E-value=0.035 Score=61.90 Aligned_cols=103 Identities=12% Similarity=0.068 Sum_probs=50.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhhhhhhc---eeecCCCCCCchHHHHHHH---HcCCchhhhcCcccchHHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTLGLASLMSKAG---LYLPAKNHPRLPWFDLILA---DIGDHQSLEQNLSTFSGHISRIVDI 342 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iGli~~~aq~G---~~vP~~~~~~l~~~d~i~~---~ig~~~~i~~~~stlSgg~krl~~i 342 (752)
.+++++||+|+||||++..++. .+++.| +.+.++. .....++++-. ..|..-........ .....+-++.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~--~l~~~G~kVllv~~D~-~R~aa~eqL~~~~~~~gvpv~~~~~~~d-p~~i~~~al~ 176 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLAR--YFQKRGYKVGVVCSDT-WRPGAYHQLRQLLDRYHIEVFGNPQEKD-AIKLAKEGVD 176 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEEECCC-SSTHHHHHHHHHHGGGTCEEECCTTCCC-HHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHH--HHHHCCCeEEEEeCCC-cchhHHHHHHHHHHhcCCcEEecCCCCC-HHHHHHHHHH
Confidence 7999999999999999988842 222333 2334333 23333444321 12221000000000 0111111122
Q ss_pred HHccCCCcEEEEeCCCCC-CChHhHHHHHHHHHHH
Q 004463 343 LELVSRESLVLIDEIGSG-TDPSEGVALATSILQY 376 (752)
Q Consensus 343 ~~la~~~~LlLLDEp~~g-lD~~~~~~L~~all~~ 376 (752)
.+...+.+++|+|.|+.. .|...-..+.. +...
T Consensus 177 ~a~~~~~DvVIIDTaGrl~~d~~lm~el~~-i~~~ 210 (443)
T 3dm5_A 177 YFKSKGVDIIIVDTAGRHKEDKALIEEMKQ-ISNV 210 (443)
T ss_dssp HHHHTTCSEEEEECCCCSSCCHHHHHHHHH-HHHH
T ss_pred HHHhCCCCEEEEECCCcccchHHHHHHHHH-HHHh
Confidence 223356899999999854 45444444433 4443
No 248
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.19 E-value=0.013 Score=63.39 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..++|+||.|+||||+++.+
T Consensus 118 ~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 56899999999999999999
No 249
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.02 Score=63.64 Aligned_cols=99 Identities=21% Similarity=0.250 Sum_probs=54.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchH-HHHHHH--HHHHc
Q 004463 269 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG-HISRIV--DILEL 345 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSg-g~krl~--~i~~l 345 (752)
+-+++.||.|+|||++.|.++- .+|..+.. +. ...-.+.+.| .++++. +..+.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~-----~~~~~~~~-----v~--------------~~~l~~~~~Ge~e~~ir~lF~~A~ 262 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVAN-----STKAAFIR-----VN--------------GSEFVHKYLGEGPRMVRDVFRLAR 262 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHH-----HHTCEEEE-----EE--------------GGGTCCSSCSHHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH-----HhCCCeEE-----Ee--------------cchhhccccchhHHHHHHHHHHHH
Confidence 4589999999999999999921 12221110 00 0011122222 233333 33455
Q ss_pred cCCCcEEEEeCCC----------CCCChHhHHHHHHHHHHHHhc----CCcEEEEEecchh
Q 004463 346 VSRESLVLIDEIG----------SGTDPSEGVALATSILQYLRD----RVGLAVVTTHYAD 392 (752)
Q Consensus 346 a~~~~LlLLDEp~----------~glD~~~~~~L~~all~~l~~----~~~tviitTH~~~ 392 (752)
...|.++++||.- .+-|......+. .++..+-. .+..||++|++.+
T Consensus 263 ~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~-~lL~~ldg~~~~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 263 ENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILI-ELLTQMDGFDQSTNVKVIMATNRAD 322 (428)
T ss_dssp HTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHH-HHHHHHHHSCSSCSEEEEEEESCSS
T ss_pred HcCCCeeechhhhhhhccccCCCCCCChHHHHHHH-HHHHHhhCCCCCCCEEEEEecCChh
Confidence 6789999999982 222333333333 35555432 2457888998866
No 250
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.11 E-value=0.0023 Score=62.25 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=22.9
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
|+++....+ ..++|+|+.||||||+.+.+
T Consensus 2 ~~~~~~~~~-~~I~l~G~~GsGKSTv~~~L 30 (184)
T 1y63_A 2 PGSMEQPKG-INILITGTPGTGKTSMAEMI 30 (184)
T ss_dssp ----CCCSS-CEEEEECSTTSSHHHHHHHH
T ss_pred CcCcCCCCC-CEEEEECCCCCCHHHHHHHH
Confidence 356666777 78999999999999999998
No 251
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.11 E-value=0.034 Score=53.99 Aligned_cols=19 Identities=37% Similarity=0.583 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+||.|+||||+++.+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l 58 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIAL 58 (226)
T ss_dssp CEEEECSTTSSHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4899999999999999998
No 252
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.10 E-value=0.03 Score=72.54 Aligned_cols=120 Identities=17% Similarity=0.188 Sum_probs=67.0
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHHhhhhh-hhhceeecCCCCCCchHHHHHHHHcCCc-hhhhcCcccchHHHHHHHH
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADIGDH-QSLEQNLSTFSGHISRIVD 341 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~-aq~G~~vP~~~~~~l~~~d~i~~~ig~~-~~i~~~~stlSgg~krl~~ 341 (752)
+++| +.+.|+||.|+|||||...++.-... .....|+..++. .-+.+ ...+|.+ +.+ .++.---+++-+..
T Consensus 1424 i~~g-~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~-~~~l~---a~~~G~dl~~l--~v~~~~~~E~~l~~ 1496 (2050)
T 3cmu_A 1424 LPMG-RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA-LDPIY---ARKLGVDIDNL--LCSQPDTGEQALEI 1496 (2050)
T ss_dssp EETT-SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC-CCHHH---HHHTTCCTTTC--EEECCSSHHHHHHH
T ss_pred ccCC-eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc-cCHHH---HHHcCCCchhc--eeecCChHHHHHHH
Confidence 5678 89999999999999999998543332 223346665552 22222 4455522 111 11111112332222
Q ss_pred H--HHccCCCcEEEEeCCCCCCChH----------h--H----HHHHHHHHHHHhcCCcEEEEEecc
Q 004463 342 I--LELVSRESLVLIDEIGSGTDPS----------E--G----VALATSILQYLRDRVGLAVVTTHY 390 (752)
Q Consensus 342 i--~~la~~~~LlLLDEp~~glD~~----------~--~----~~L~~all~~l~~~~~tviitTH~ 390 (752)
+ +.....|++|++||..+-+-.. . + ..+...+..++.++++++|+|-.-
T Consensus 1497 ~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq~ 1563 (2050)
T 3cmu_A 1497 CDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 1563 (2050)
T ss_dssp HHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECE
T ss_pred HHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEccc
Confidence 2 3334689999999985444321 1 1 223444677777777777776543
No 253
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.08 E-value=0.028 Score=62.66 Aligned_cols=100 Identities=18% Similarity=0.219 Sum_probs=56.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchH-HHH--HHHHHHHc
Q 004463 269 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG-HIS--RIVDILEL 345 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSg-g~k--rl~~i~~l 345 (752)
+-+++.||.|+|||+|.|.++- .+|..+.. +. ...-++.+.| +++ +..+..+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~-----e~~~~~~~-----v~--------------~s~l~sk~~Gese~~ir~~F~~A~ 271 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAA-----TIGANFIF-----SP--------------ASGIVDKYIGESARIIREMFAYAK 271 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH-----HHTCEEEE-----EE--------------GGGTCCSSSSHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH-----HhCCCEEE-----Ee--------------hhhhccccchHHHHHHHHHHHHHH
Confidence 4589999999999999999921 12321110 00 0011122222 233 33344556
Q ss_pred cCCCcEEEEeCCCCC----------CChHhHHHHHHHHHHHHhc----CCcEEEEEecchhH
Q 004463 346 VSRESLVLIDEIGSG----------TDPSEGVALATSILQYLRD----RVGLAVVTTHYADL 393 (752)
Q Consensus 346 a~~~~LlLLDEp~~g----------lD~~~~~~L~~all~~l~~----~~~tviitTH~~~l 393 (752)
...|.+|++||.-+- .|. ........++..+-. .+..||++|++++.
T Consensus 272 ~~~P~IifiDEiDai~~~R~~~~~~~~~-~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~ 332 (437)
T 4b4t_L 272 EHEPCIIFMDEVDAIGGRRFSEGTSADR-EIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT 332 (437)
T ss_dssp HSCSEEEEEECCCSSSCCCSSSCCSSTT-HHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS
T ss_pred hcCCceeeeecccccccccccCCCCcch-HHHHHHHHHHHHhhcccCCCCeEEEEecCCchh
Confidence 678999999998421 122 222333336665532 23578899998763
No 254
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.08 E-value=0.0027 Score=63.40 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+||+||||||+++.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L 25 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAM 25 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
No 255
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.06 E-value=0.00032 Score=75.67 Aligned_cols=41 Identities=12% Similarity=0.064 Sum_probs=30.9
Q ss_pred cccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 247 GSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 247 ~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
+++++.|+...+ ++++...++ .+++|+||||+|||||++.+
T Consensus 34 ~~~~~~~~~~~~~~~l~~~~~~~-~~i~i~G~~g~GKSTl~~~l 76 (341)
T 2p67_A 34 RHPRHQALSTQLLDAIMPYCGNT-LRLGVTGTPGAGKSTFLEAF 76 (341)
T ss_dssp CCHHHHHHHHHHHHHHGGGCSCS-EEEEEEECTTSCHHHHHHHH
T ss_pred CCchhhhHHHHHHHhCCcccCCC-EEEEEEcCCCCCHHHHHHHH
Confidence 344444443333 566667777 89999999999999999999
No 256
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.02 E-value=0.0031 Score=61.62 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+||||+|||||++.+
T Consensus 7 kv~lvG~~g~GKSTLl~~l 25 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRF 25 (199)
T ss_dssp EEEEESSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5899999999999999999
No 257
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.00 E-value=0.0016 Score=74.21 Aligned_cols=31 Identities=23% Similarity=0.453 Sum_probs=26.9
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhh
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTLGLA 291 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli 291 (752)
+++|.+.+| +.+|+|+||+||||+|.+|.++
T Consensus 53 ~~~l~f~~g--~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 53 QLELELGGG--FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp CEEEECCCS--EEEEEESHHHHHHHHTHHHHHH
T ss_pred eEEEecCCC--eEEEEcCCCCCHHHHHHHHHHH
Confidence 567777777 8999999999999999999554
No 258
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.99 E-value=0.0036 Score=60.33 Aligned_cols=22 Identities=32% Similarity=0.293 Sum_probs=20.6
Q ss_pred cCceEEEEEcCCCCCHHHHHHHH
Q 004463 266 CETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 266 ~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
+| .+++|+|++||||||+++.+
T Consensus 4 ~g-~~i~l~G~~GsGKST~~~~L 25 (179)
T 2pez_A 4 RG-CTVWLTGLSGAGKTTVSMAL 25 (179)
T ss_dssp CC-EEEEEECCTTSSHHHHHHHH
T ss_pred CC-cEEEEECCCCCCHHHHHHHH
Confidence 46 78999999999999999999
No 259
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.95 E-value=0.037 Score=55.42 Aligned_cols=46 Identities=15% Similarity=0.062 Sum_probs=33.9
Q ss_pred cCCCcEEEEeCCCC----CCChHhHHHHHHHHHHHHhcCCcEEEEEecch
Q 004463 346 VSRESLVLIDEIGS----GTDPSEGVALATSILQYLRDRVGLAVVTTHYA 391 (752)
Q Consensus 346 a~~~~LlLLDEp~~----glD~~~~~~L~~all~~l~~~~~tviitTH~~ 391 (752)
...++++++|-.+. .-|......+...+.....+.++++++++|..
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~ 182 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEe
Confidence 46889999997642 23555566667767777777899999999864
No 260
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.93 E-value=0.0017 Score=74.57 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=22.9
Q ss_pred EEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 263 KVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 263 ~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
.+.+| .+++|+|||||||||++|+|
T Consensus 365 ~~~~G-~iI~LiG~sGSGKSTLar~L 389 (552)
T 3cr8_A 365 RERQG-FTVFFTGLSGAGKSTLARAL 389 (552)
T ss_dssp GGGSC-EEEEEEESSCHHHHHHHHHH
T ss_pred ccccc-eEEEEECCCCChHHHHHHHH
Confidence 35678 89999999999999999999
No 261
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.89 E-value=0.032 Score=56.83 Aligned_cols=127 Identities=13% Similarity=0.084 Sum_probs=63.6
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHHHhhhhhhh--hceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHH
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSK--AGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHI 336 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq--~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~ 336 (752)
|....-..| .+.+++||=|+||||.|-....-...+. .-++.|.-. ...+ ..+..++|..-... .+....-
T Consensus 11 p~~~~~~~g-~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D-~Ryg--~~i~sr~G~~~~a~-~i~~~~d-- 83 (234)
T 2orv_A 11 PGSPSKTRG-QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD-TRYS--SSFCTHDRNTMEAL-PACLLRD-- 83 (234)
T ss_dssp -------CC-EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC-CCC-------------CEEE-EESSGGG--
T ss_pred CCCCCCCce-EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC-ccch--HHHHhhcCCeeEEE-ecCCHHH--
Confidence 333334457 8999999999999976644422211111 223445543 3333 56667666532111 1111111
Q ss_pred HHHHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecch-----------hHHhhhccccccc
Q 004463 337 SRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA-----------DLSCLKDKDTRFE 404 (752)
Q Consensus 337 krl~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~-----------~l~~~a~~~~~i~ 404 (752)
+...+.+.++|++||.---.+ +.+ +++.+.+.|..||++-++. +|..+||.+..+.
T Consensus 84 -----i~~~~~~~dvViIDEaQF~~~------v~e-l~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 84 -----VAQEALGVAVIGIDEGQFFPD------IVE-FCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp -----GHHHHTTCSEEEESSGGGCTT------HHH-HHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred -----HHHHhccCCEEEEEchhhhhh------HHH-HHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 222236789999999877654 333 5555666789999999993 2445677665543
No 262
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.84 E-value=0.047 Score=70.85 Aligned_cols=123 Identities=17% Similarity=0.216 Sum_probs=67.2
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHHhhhhh-hhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHH-HHHH
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVD 341 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~-aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~k-rl~~ 341 (752)
+++| .++.|.||.|+|||||+..+...... ....+|+-.+.... +. ....+|..-.--.-....+.++- ....
T Consensus 380 l~~G-~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~-~~---~a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 380 LPMG-RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD-PI---YARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp EETT-SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCC-HH---HHHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred ccCC-cEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHH-HH---HHHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 5688 89999999999999999888332221 12234555554222 11 24455542110000011233332 2222
Q ss_pred HHHccCCCcEEEEeCCCCCCC-hH------------hHHHHHH---HHHHHHhcCCcEEEEEecch
Q 004463 342 ILELVSRESLVLIDEIGSGTD-PS------------EGVALAT---SILQYLRDRVGLAVVTTHYA 391 (752)
Q Consensus 342 i~~la~~~~LlLLDEp~~glD-~~------------~~~~L~~---all~~l~~~~~tviitTH~~ 391 (752)
.+.....+++|++|....-.. +. ....+.. .+...+.+.+++||+++|-.
T Consensus 455 ~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~ 520 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 520 (2050)
T ss_dssp HHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCE
T ss_pred HHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 222246899999999987663 10 1112222 23333467899999999863
No 263
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.81 E-value=0.0095 Score=62.28 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTLG 289 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iG 289 (752)
..++|+||.|+||||+.+.++
T Consensus 68 ~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 568999999999999999883
No 264
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.81 E-value=0.015 Score=54.12 Aligned_cols=88 Identities=8% Similarity=0.090 Sum_probs=48.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHHHHHHHHHccCC
Q 004463 269 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSR 348 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~krl~~i~~la~~ 348 (752)
.-+.|+||.|+|||++.+.+.-. .+-++.-.. ..+. +. . ..-....+ +
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~-----~~~~~~~~~-~~~~--~~----~-------------------~~~~~~~a-~ 75 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN-----GTPWVSPAR-VEYL--ID----M-------------------PMELLQKA-E 75 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT-----TSCEECCSS-TTHH--HH----C-------------------HHHHHHHT-T
T ss_pred CcEEEECCCCccHHHHHHHHHHh-----CCCeEEech-hhCC--hH----h-------------------hhhHHHhC-C
Confidence 45889999999999999998211 011111111 1111 00 0 11112222 4
Q ss_pred CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecc
Q 004463 349 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 390 (752)
Q Consensus 349 ~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~ 390 (752)
+.+|+|||+.. +++.....|.. +++.....+..+|++|+.
T Consensus 76 ~~~l~lDei~~-l~~~~q~~Ll~-~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 76 GGVLYVGDIAQ-YSRNIQTGITF-IIGKAERCRVRVIASCSY 115 (143)
T ss_dssp TSEEEEEECTT-CCHHHHHHHHH-HHHHHTTTTCEEEEEEEE
T ss_pred CCeEEEeChHH-CCHHHHHHHHH-HHHhCCCCCEEEEEecCC
Confidence 57999999874 56666666665 444333345677777764
No 265
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.79 E-value=0.019 Score=63.28 Aligned_cols=99 Identities=17% Similarity=0.220 Sum_probs=55.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeec-CCCCCCchHHHHHHHHcCCchhhhcCcccchH-HHHHHH--HHHH
Q 004463 269 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLP-AKNHPRLPWFDLILADIGDHQSLEQNLSTFSG-HISRIV--DILE 344 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP-~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSg-g~krl~--~i~~ 344 (752)
+-+++.||.|+|||+|.|.++- .+|..+. -.+ ..-.+.+.| +++++. +..+
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~-----e~~~~f~~v~~--------------------s~l~sk~vGese~~vr~lF~~A 237 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAH-----HTDCKFIRVSG--------------------AELVQKYIGEGSRMVRELFVMA 237 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHH-----HHTCEEEEEEG--------------------GGGSCSSTTHHHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHH-----hhCCCceEEEh--------------------HHhhccccchHHHHHHHHHHHH
Confidence 3489999999999999999921 1222111 111 011122333 333333 3355
Q ss_pred ccCCCcEEEEeCCCCCC----------ChHhHHHHHHHHHHHHhc----CCcEEEEEecchhH
Q 004463 345 LVSRESLVLIDEIGSGT----------DPSEGVALATSILQYLRD----RVGLAVVTTHYADL 393 (752)
Q Consensus 345 la~~~~LlLLDEp~~gl----------D~~~~~~L~~all~~l~~----~~~tviitTH~~~l 393 (752)
....|.+|++||.-+-. |.. .......++..+-. .+..||.+|+.++.
T Consensus 238 r~~aP~IIFiDEiDai~~~R~~~~~~~~~~-~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 238 REHAPSIIFMDEIDSIGSTRVEGSGGGDSE-VQRTMLELLNQLDGFETSKNIKIIMATNRLDI 299 (405)
T ss_dssp HHTCSEEEEEESSSCCTTSCSCSSSGGGGH-HHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS
T ss_pred HHhCCceEeeecchhhccCCCCCCCCCcHH-HHHHHHHHHHhhhccCCCCCeEEEeccCChhh
Confidence 56789999999974322 122 22233336655532 24468889998763
No 266
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.78 E-value=0.015 Score=54.30 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.-+.|+||.|+|||++.+.+
T Consensus 25 ~~vll~G~~GtGKt~lA~~i 44 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYL 44 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHH
Confidence 45799999999999999999
No 267
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.76 E-value=0.033 Score=63.01 Aligned_cols=126 Identities=10% Similarity=-0.005 Sum_probs=65.4
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHHhhhhh--hhhceeecCCCCCCchHHHHHHHH-cCCc--h---------------
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLGLASLM--SKAGLYLPAKNHPRLPWFDLILAD-IGDH--Q--------------- 323 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~--aq~G~~vP~~~~~~l~~~d~i~~~-ig~~--~--------------- 323 (752)
+.+| ++++|.|++|+|||||+-.+...... ....+|+..+.. .-.+..++++. .+.. .
T Consensus 239 l~~G-~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s-~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~~ 316 (503)
T 1q57_A 239 ARGG-EVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLIGLHNRVRLRQSDSLKREIIENGKFD 316 (503)
T ss_dssp CCTT-CEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC-HHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHHH
T ss_pred cCCC-eEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC-HHHHHHHHHHHHcCCChhhccccccCCCCHHHHH
Confidence 5788 89999999999999999888443332 122345444431 11223333221 1211 0
Q ss_pred ------------hhhcCcccchHHHH--HHHHHHHccCCCcEEEEeCCCCCCC-------hHhHHHHHHHHHHHHhcCCc
Q 004463 324 ------------SLEQNLSTFSGHIS--RIVDILELVSRESLVLIDEIGSGTD-------PSEGVALATSILQYLRDRVG 382 (752)
Q Consensus 324 ------------~i~~~~stlSgg~k--rl~~i~~la~~~~LlLLDEp~~glD-------~~~~~~L~~all~~l~~~~~ 382 (752)
.+......++..+- ++..+ ..-.++++|++|=...-.. ......+...+.....+.++
T Consensus 317 ~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~-~~~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i 395 (503)
T 1q57_A 317 QWFDELFGNDTFHLYDSFAEAETDRLLAKLAYM-RSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGV 395 (503)
T ss_dssp HHHHHHHTTTCEEEECCC---CHHHHHHHHHHH-HHTTCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhccCCEEEECCCCCCCHHHHHHHHHHH-HHhcCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 00011111332222 22211 2235799999997654221 11223344545555566799
Q ss_pred EEEEEecchh
Q 004463 383 LAVVTTHYAD 392 (752)
Q Consensus 383 tviitTH~~~ 392 (752)
+||+++|-..
T Consensus 396 ~vi~~~q~~r 405 (503)
T 1q57_A 396 VLVVICHLKN 405 (503)
T ss_dssp EEEEEEECCC
T ss_pred eEEEEEcCCc
Confidence 9999999753
No 268
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.73 E-value=0.044 Score=58.35 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..++|.||.|+|||++.+.+
T Consensus 46 ~~iLL~GppGtGKT~la~al 65 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAV 65 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHH
Confidence 56899999999999999999
No 269
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.73 E-value=0.0039 Score=61.58 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.7
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHH
Q 004463 264 VECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
+.+| .+++|+||+||||||+.+.+
T Consensus 9 ~~~~-~~i~l~G~sGsGKsTl~~~L 32 (204)
T 2qor_A 9 MARI-PPLVVCGPSGVGKGTLIKKV 32 (204)
T ss_dssp CCCC-CCEEEECCTTSCHHHHHHHH
T ss_pred cccC-CEEEEECCCCCCHHHHHHHH
Confidence 3567 79999999999999999998
No 270
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.68 E-value=0.024 Score=60.14 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..++|+||.|+||||+++.+
T Consensus 56 ~~vll~G~~GtGKT~la~~i 75 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANII 75 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHH
Confidence 35899999999999999999
No 271
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.64 E-value=0.026 Score=63.80 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..++|+||.|+|||++.+.+
T Consensus 239 ~~vLL~GppGtGKT~lArai 258 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAV 258 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHH
Confidence 46899999999999999999
No 272
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.037 Score=61.59 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
+-+++.||.|+|||+|.|++
T Consensus 216 rGvLLyGPPGTGKTllAkAi 235 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARAC 235 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHH
Confidence 45899999999999999999
No 273
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.45 E-value=0.0055 Score=60.20 Aligned_cols=20 Identities=20% Similarity=0.410 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+||+||||||+.+.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L 38 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAI 38 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999999
No 274
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.43 E-value=0.04 Score=61.53 Aligned_cols=119 Identities=13% Similarity=0.054 Sum_probs=64.8
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHHHhhhhh-hhhceeecCCCCCCchHHHHHHHHc-CCc-hhhhcCcccchHHHH-HH
Q 004463 264 VECETRVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADI-GDH-QSLEQNLSTFSGHIS-RI 339 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~iGli~~~-aq~G~~vP~~~~~~l~~~d~i~~~i-g~~-~~i~~~~stlSgg~k-rl 339 (752)
+.+| ++++|.|+.|+|||||+-.+...... ....+|+..+. ..-.+..++++.. |.. +.+..+-..|+.++. ++
T Consensus 194 l~~G-~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm-s~~ql~~R~~~~~~~i~~~~l~~g~~~l~~~~~~~l 271 (444)
T 3bgw_A 194 YKRR-NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM-GKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKL 271 (444)
T ss_dssp BCSS-CEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS-CTTHHHHHHHHHHSCCCHHHHHHTGGGTCCSCHHHH
T ss_pred CCCC-cEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC-CHHHHHHHHHHHHcCCCHHHHhcccCCCCHHHHHHH
Confidence 5678 89999999999999999888443332 22234444443 2334455555432 322 112211112554443 56
Q ss_pred HHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcE--EEEEec
Q 004463 340 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGL--AVVTTH 389 (752)
Q Consensus 340 ~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~t--viitTH 389 (752)
..+...+...++.+.|+|+ +++.+-.+.+. +...+.+.. +|++-+
T Consensus 272 ~~a~~~l~~~~l~i~d~~~--~s~~~i~~~ir---~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 272 SMAIGEISNSNINIFDKAG--QSVNYIWSKTR---QTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp HHHHHHHHTSCEEEECCSS--CBHHHHHHHHH---HHHHHSCSSCEEEEEEC
T ss_pred HHHHHHHhcCCEEEECCCC--CCHHHHHHHHH---HHHHHhCCCCeEEEEec
Confidence 5555444566788888874 66654333222 222233555 555544
No 275
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.36 E-value=0.044 Score=59.17 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..++|+||.|+||||+.+.+
T Consensus 85 ~~iLL~GppGtGKT~la~al 104 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAV 104 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHH
Confidence 34789999999999999999
No 276
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.31 E-value=0.023 Score=61.56 Aligned_cols=87 Identities=23% Similarity=0.147 Sum_probs=45.5
Q ss_pred eEEEE--EcCCCCCHHHHHHHHHhh-hhh------hhhceeecCCC-CCCchHHHHHHHHcCCchhhhcCcccchHHH--
Q 004463 269 RVVVI--TGPNTGGKTASMKTLGLA-SLM------SKAGLYLPAKN-HPRLPWFDLILADIGDHQSLEQNLSTFSGHI-- 336 (752)
Q Consensus 269 ~~~~I--~GpNGsGKSTlLK~iGli-~~~------aq~G~~vP~~~-~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~-- 336 (752)
..++| +||.|+|||||++.+.-. .-. .....++.+.. .....++..++..+|.... ....+...
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~ 126 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQ----VRGAPALDIL 126 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCC----CTTCCHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCC----CCCCCHHHHH
Confidence 57777 999999999999998321 110 00123444322 1222456666666654311 01112211
Q ss_pred HHHHHHHHccCCCcEEEEeCCCC
Q 004463 337 SRIVDILELVSRESLVLIDEIGS 359 (752)
Q Consensus 337 krl~~i~~la~~~~LlLLDEp~~ 359 (752)
..+...+.....|-+|+|||.-.
T Consensus 127 ~~l~~~l~~~~~~~llvlDe~~~ 149 (412)
T 1w5s_A 127 KALVDNLYVENHYLLVILDEFQS 149 (412)
T ss_dssp HHHHHHHHHHTCEEEEEEESTHH
T ss_pred HHHHHHHHhcCCeEEEEEeCHHH
Confidence 13332332235678999999744
No 277
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.27 E-value=0.0088 Score=57.59 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.2
Q ss_pred cCceEEEEEcCCCCCHHHHHHHH
Q 004463 266 CETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 266 ~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
.| .+++|+||+||||||+.+.+
T Consensus 3 ~g-~~I~l~G~~GsGKST~~~~L 24 (186)
T 3cm0_A 3 VG-QAVIFLGPPGAGKGTQASRL 24 (186)
T ss_dssp CE-EEEEEECCTTSCHHHHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHH
Confidence 45 68999999999999999998
No 278
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.27 E-value=0.026 Score=64.08 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..++|+||.|+||||+++.+
T Consensus 78 ~~lLL~GppGtGKTtla~~l 97 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLV 97 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999999
No 279
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.26 E-value=0.032 Score=58.51 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTLG 289 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iG 289 (752)
..++|+||.|+||||+++.++
T Consensus 39 ~~vll~G~~GtGKT~la~~i~ 59 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIA 59 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999993
No 280
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.26 E-value=0.048 Score=57.79 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..++|.||.|+|||++.+.+
T Consensus 52 ~~vLl~GppGtGKT~la~ai 71 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAV 71 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 46899999999999999999
No 281
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.067 Score=59.83 Aligned_cols=99 Identities=13% Similarity=0.190 Sum_probs=54.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeec-CCCCCCchHHHHHHHHcCCchhhhcCcccchH-HHH--HHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLP-AKNHPRLPWFDLILADIGDHQSLEQNLSTFSG-HIS--RIVDILE 344 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP-~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSg-g~k--rl~~i~~ 344 (752)
+-++|.||.|+|||+|.|.++- .+|..+. ..+ ..-.+.+.| +++ |..+..+
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~-----e~~~~fi~vs~--------------------s~L~sk~vGesek~ir~lF~~A 298 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVAN-----RTDATFIRVIG--------------------SELVQKYVGEGARMVRELFEMA 298 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHH-----HHTCEEEEEEG--------------------GGGCCCSSSHHHHHHHHHHHHH
T ss_pred CceEeeCCCCCcHHHHHHHHHh-----ccCCCeEEEEh--------------------HHhhcccCCHHHHHHHHHHHHH
Confidence 4589999999999999999921 1222111 010 011122222 233 3334455
Q ss_pred ccCCCcEEEEeCCCCCCCh---------HhHHHHHHHHHHHHhc----CCcEEEEEecchh
Q 004463 345 LVSRESLVLIDEIGSGTDP---------SEGVALATSILQYLRD----RVGLAVVTTHYAD 392 (752)
Q Consensus 345 la~~~~LlLLDEp~~glD~---------~~~~~L~~all~~l~~----~~~tviitTH~~~ 392 (752)
....|.+|++||.-+-... .........++..+-. .+..||++|+..+
T Consensus 299 r~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd 359 (467)
T 4b4t_H 299 RTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPN 359 (467)
T ss_dssp HHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTT
T ss_pred HhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcc
Confidence 6678999999998643211 1112222235554432 2346788998866
No 282
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.13 E-value=0.072 Score=59.02 Aligned_cols=99 Identities=17% Similarity=0.173 Sum_probs=54.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhhhhhhceee-cCCCCCCchHHHHHHHHcCCchhhhcCcccchH-HHH--HHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYL-PAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG-HIS--RIVDILE 344 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~v-P~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSg-g~k--rl~~i~~ 344 (752)
+-+++.||.|+|||+|.|+++- .+|..+ .-.+ .+ -.+.+.| .++ |..+..+
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~-----e~~~~fi~v~~----------------s~----l~sk~vGesek~ir~lF~~A 271 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVAN-----QTSATFLRIVG----------------SE----LIQKYLGDGPRLCRQIFKVA 271 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHH-----HHTCEEEEEES----------------GG----GCCSSSSHHHHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHH-----HhCCCEEEEEH----------------HH----hhhccCchHHHHHHHHHHHH
Confidence 4589999999999999999921 122211 1111 01 1122222 233 3333455
Q ss_pred ccCCCcEEEEeCCCCC----------CChHhHHHHHHHHHHHHhc----CCcEEEEEecchhH
Q 004463 345 LVSRESLVLIDEIGSG----------TDPSEGVALATSILQYLRD----RVGLAVVTTHYADL 393 (752)
Q Consensus 345 la~~~~LlLLDEp~~g----------lD~~~~~~L~~all~~l~~----~~~tviitTH~~~l 393 (752)
....|.+|++||.-+- -+......+. .++..+-. .+..||++|++.+.
T Consensus 272 r~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~-~LL~~lDg~~~~~~ViVIaATNrpd~ 333 (437)
T 4b4t_I 272 GENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTML-ELLNQLDGFDDRGDVKVIMATNKIET 333 (437)
T ss_dssp HHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHH-HHHHHHHHCCCSSSEEEEEEESCSTT
T ss_pred HhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHH-HHHHHhhCcCCCCCEEEEEeCCChhh
Confidence 5678999999997432 1222222333 35554432 24478889998763
No 283
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.12 E-value=0.008 Score=65.01 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+||+|+||||||+.+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L 94 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYF 94 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 78999999999999999999
No 284
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.12 E-value=0.057 Score=55.48 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTLG 289 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iG 289 (752)
..++|+||.|+||||+.+.++
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia 85 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIA 85 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 578999999999999999993
No 285
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.11 E-value=0.0044 Score=67.36 Aligned_cols=40 Identities=15% Similarity=0.308 Sum_probs=28.4
Q ss_pred CeEEEcccccccCCeeE--eeeEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 242 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v--~idl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
+.+.+.+++..|+.+.+ +++|. ++|+|+||+|||||++++
T Consensus 16 ~~v~~~~l~~~~~~k~~~~~~~~~-------I~vvG~~g~GKSTLln~L 57 (361)
T 2qag_A 16 GYVGFANLPNQVHRKSVKKGFEFT-------LMVVGESGLGKSTLINSL 57 (361)
T ss_dssp -----CCHHHHHHTHHHHHCCEEC-------EEECCCTTSCHHHHHHHH
T ss_pred ceEEeccchHHhCCeeecCCCCEE-------EEEEcCCCCCHHHHHHHH
Confidence 45667888888877655 44443 489999999999999997
No 286
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.10 E-value=0.0023 Score=76.94 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=22.8
Q ss_pred eEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 261 DIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 261 dl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
++.+.++ ..++|+||||+|||||.|++
T Consensus 505 ~~~~~~~-~~vLL~GppGtGKT~Lakal 531 (806)
T 1ypw_A 505 KFGMTPS-KGVLFYGPPGCGKTLLAKAI 531 (806)
T ss_dssp CCCCCCC-CCCCCBCCTTSSHHHHHHHH
T ss_pred hcCCCCC-ceeEEECCCCCCHHHHHHHH
Confidence 3445566 67899999999999999999
No 287
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.09 E-value=0.0051 Score=67.35 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=37.4
Q ss_pred CeEEEcccccccCCeeE-----------------eeeEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 242 SEMTVGSLSKGISDFPV-----------------PIDIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 242 ~~l~~~~ls~~y~~~~v-----------------~idl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
+.+.++||++.|+.... ++.+.+.+| +.++|+||+|+|||||++.|
T Consensus 132 ~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rG-Qr~~IvG~sG~GKTtLl~~I 194 (422)
T 3ice_A 132 NKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRG-QRGLIVAPPKAGKTMLLQNI 194 (422)
T ss_dssp TSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTT-CEEEEECCSSSSHHHHHHHH
T ss_pred CCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCC-cEEEEecCCCCChhHHHHHH
Confidence 34567888888875332 466788899 89999999999999999988
No 288
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.07 E-value=0.012 Score=56.89 Aligned_cols=23 Identities=39% Similarity=0.351 Sum_probs=21.0
Q ss_pred ccCceEEEEEcCCCCCHHHHHHHH
Q 004463 265 ECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 265 ~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
.+| .+++|+|++||||||+.+.+
T Consensus 11 ~~~-~~i~l~G~~GsGKsT~~~~L 33 (186)
T 2yvu_A 11 EKG-IVVWLTGLPGSGKTTIATRL 33 (186)
T ss_dssp SCC-EEEEEECCTTSSHHHHHHHH
T ss_pred CCC-cEEEEEcCCCCCHHHHHHHH
Confidence 356 79999999999999999999
No 289
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.02 E-value=0.076 Score=57.82 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..++|+||.|+|||++.+.+
T Consensus 149 ~~vLL~GppGtGKT~la~ai 168 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAV 168 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 56899999999999999999
No 290
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.02 E-value=0.011 Score=55.81 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+||.||||||+.+.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L 21 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKL 21 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999998
No 291
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.00 E-value=0.071 Score=57.43 Aligned_cols=26 Identities=12% Similarity=0.373 Sum_probs=20.5
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++.++ .++|+|++|+||||||+.+
T Consensus 29 ~i~~~lp----~I~vvG~~~sGKSSLln~l 54 (360)
T 3t34_A 29 TLWDSLP----AIAVVGGQSSGKSSVLESI 54 (360)
T ss_dssp ---CCCC----EEEEECBTTSSHHHHHHHH
T ss_pred cccccCC----EEEEECCCCCcHHHHHHHH
Confidence 4555554 6899999999999999999
No 292
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.84 E-value=0.013 Score=58.18 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.9
Q ss_pred EccCceEEEEEcCCCCCHHHHHHHH
Q 004463 264 VECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 264 l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
+..| .+++|+|++||||||+.+.+
T Consensus 22 ~~~~-~~i~~~G~~GsGKsT~~~~l 45 (211)
T 1m7g_A 22 NQRG-LTIWLTGLSASGKSTLAVEL 45 (211)
T ss_dssp TSSC-EEEEEECSTTSSHHHHHHHH
T ss_pred CCCC-CEEEEECCCCCCHHHHHHHH
Confidence 4567 89999999999999999999
No 293
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.76 E-value=0.015 Score=54.69 Aligned_cols=20 Identities=40% Similarity=0.564 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+||.||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999988
No 294
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.68 E-value=0.016 Score=58.57 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.9
Q ss_pred ccCceEEEEEcCCCCCHHHHHHHH
Q 004463 265 ECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 265 ~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
.++ .+++|+|||||||||+.+.+
T Consensus 14 ~~~-~~i~i~G~~gsGKst~~~~l 36 (236)
T 1q3t_A 14 MKT-IQIAIDGPASSGKSTVAKII 36 (236)
T ss_dssp CCC-CEEEEECSSCSSHHHHHHHH
T ss_pred cCC-cEEEEECCCCCCHHHHHHHH
Confidence 456 78999999999999999998
No 295
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.62 E-value=0.023 Score=60.98 Aligned_cols=20 Identities=25% Similarity=0.159 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..++|+||.|+||||+++.+
T Consensus 46 ~~vll~G~~G~GKT~la~~l 65 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYI 65 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
No 296
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.61 E-value=0.051 Score=55.55 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTLG 289 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iG 289 (752)
..+.|+||.|+|||++.+.+.
T Consensus 30 ~~vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLH 50 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHH
Confidence 457899999999999999994
No 297
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.60 E-value=0.014 Score=57.51 Aligned_cols=20 Identities=45% Similarity=0.795 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
+.++|+||+|+|||||++.+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L 21 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKL 21 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 45899999999999999988
No 298
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.59 E-value=0.052 Score=60.48 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..++|.||.|+|||+|.+.+
T Consensus 168 ~~vLL~GppGtGKT~lA~ai 187 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAV 187 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 56899999999999999999
No 299
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.59 E-value=0.018 Score=54.35 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..++|+|+||+|||||++.+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l 23 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNAL 23 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 300
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.58 E-value=0.019 Score=57.02 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+|++||||||+.+.+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L 24 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAF 24 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999999
No 301
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.57 E-value=0.039 Score=58.94 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..++|+||.|+||||+++.+
T Consensus 39 ~~~ll~G~~G~GKT~la~~l 58 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLL 58 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 302
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.57 E-value=0.017 Score=56.19 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+||+|+|||||++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l 26 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKL 26 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHH
Confidence 58999999999999999998
No 303
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.50 E-value=0.048 Score=57.55 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTLG 289 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iG 289 (752)
..++|+||.|+|||++.+.+.
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~ 46 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALH 46 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHH
T ss_pred CcEEEECCCCchHHHHHHHHH
Confidence 458899999999999999993
No 304
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.50 E-value=0.054 Score=53.47 Aligned_cols=121 Identities=15% Similarity=0.229 Sum_probs=61.1
Q ss_pred cCceEEEEEcCCCCCHHHHHHHHHhhhhh-hh-hceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHHHHHHHH
Q 004463 266 CETRVVVITGPNTGGKTASMKTLGLASLM-SK-AGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDIL 343 (752)
Q Consensus 266 ~g~~~~~I~GpNGsGKSTlLK~iGli~~~-aq-~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~krl~~i~ 343 (752)
.| .+.+++||-|+||||.|--+..-..- .+ ..++.|.-. ...+ ...+...+|..-. ...++... .+.
T Consensus 7 ~g-~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d-~r~~-~~~i~s~~g~~~~-a~~~~~~~-------~i~ 75 (191)
T 1xx6_A 7 HG-WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEID-NRYS-KEDVVSHMGEKEQ-AVAIKNSR-------EIL 75 (191)
T ss_dssp CC-EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC---------CEEECTTSCEEE-CEEESSST-------HHH
T ss_pred CC-EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC-ccch-HHHHHhhcCCcee-eEeeCCHH-------HHH
Confidence 46 89999999999999887655211111 11 122333321 1111 1112223332210 00111111 222
Q ss_pred Hcc-CCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecch-----------hHHhhhcccccc
Q 004463 344 ELV-SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA-----------DLSCLKDKDTRF 403 (752)
Q Consensus 344 ~la-~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~-----------~l~~~a~~~~~i 403 (752)
..+ .+.++|++||.-- +|+..- . .++.+.+.+..||++.++. +|..+||.+..+
T Consensus 76 ~~~~~~~dvViIDEaqf-l~~~~v----~-~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el 141 (191)
T 1xx6_A 76 KYFEEDTEVIAIDEVQF-FDDEIV----E-IVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKI 141 (191)
T ss_dssp HHCCTTCSEEEECSGGG-SCTHHH----H-HHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEEC
T ss_pred HHHhccCCEEEEECCCC-CCHHHH----H-HHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEee
Confidence 222 3479999999654 666442 2 3444555688999999854 355577766544
No 305
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.49 E-value=0.1 Score=58.17 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|.||.|+||||+.+.|
T Consensus 52 ~vLL~GppGtGKTtlAr~i 70 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVI 70 (447)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 5899999999999999999
No 306
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.38 E-value=0.02 Score=58.81 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+|||||||||+.+.+
T Consensus 2 ~li~I~G~~GSGKSTla~~L 21 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQI 21 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHH
Confidence 46899999999999999998
No 307
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.35 E-value=0.021 Score=55.05 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.1
Q ss_pred cCceEEEEEcCCCCCHHHHHHHH
Q 004463 266 CETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 266 ~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
.+ .+++|+||.||||||+.+.+
T Consensus 4 ~~-~~I~l~G~~GsGKST~~~~L 25 (193)
T 2rhm_A 4 TP-ALIIVTGHPATGKTTLSQAL 25 (193)
T ss_dssp CC-EEEEEEESTTSSHHHHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHH
Confidence 45 78999999999999999998
No 308
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.33 E-value=0.022 Score=54.35 Aligned_cols=20 Identities=25% Similarity=0.692 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+||.||||||+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~L 23 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCL 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999998
No 309
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.33 E-value=0.034 Score=61.17 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.5
Q ss_pred ccCceEEEEEcCCCCCHHHHHHHH
Q 004463 265 ECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 265 ~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
..+ ..++|+|+||+||||||+.+
T Consensus 20 ~~~-~kvgIVG~pnvGKSTL~n~L 42 (396)
T 2ohf_A 20 GTS-LKIGIVGLPNVGKSTFFNVL 42 (396)
T ss_dssp SSC-CCEEEECCSSSSHHHHHHHH
T ss_pred cCC-CEEEEECCCCCCHHHHHHHH
Confidence 455 57899999999999999999
No 310
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.33 E-value=0.38 Score=57.12 Aligned_cols=21 Identities=33% Similarity=0.311 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTLG 289 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iG 289 (752)
.-++|+||.|+||||+.+.++
T Consensus 202 ~~vLL~G~pGtGKT~la~~la 222 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAEGLA 222 (758)
T ss_dssp CEEEEESCTTTTTHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHH
Confidence 457999999999999999994
No 311
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=94.26 E-value=0.19 Score=57.42 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=64.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh---hhhhh--hhceeecCCCCC---CchHHHHHHHHcCCchhh--hcCcccchHHHH
Q 004463 268 TRVVVITGPNTGGKTASMKTLGL---ASLMS--KAGLYLPAKNHP---RLPWFDLILADIGDHQSL--EQNLSTFSGHIS 337 (752)
Q Consensus 268 ~~~~~I~GpNGsGKSTlLK~iGl---i~~~a--q~G~~vP~~~~~---~l~~~d~i~~~ig~~~~i--~~~~stlSgg~k 337 (752)
..+++|+|+-|.|||||.+.+.- ..+.. ...+++..+... ...+...++..++..... -......+....
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l 231 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVL 231 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHH
Confidence 37999999999999999998842 11211 223455444422 123455667777654221 111112111211
Q ss_pred HHHHHHHccCC-CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHhh
Q 004463 338 RIVDILELVSR-ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL 396 (752)
Q Consensus 338 rl~~i~~la~~-~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~~ 396 (752)
.-.+...+... +-||+||-.-. ...+. +.. ..|+.||+||-+..+...
T Consensus 232 ~~~l~~~L~~~kr~LlVLDdv~~------~~~~~--~~~---~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 232 KRMICNALIDRPNTLFVFDDVVQ------EETIR--WAQ---ELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHHHHHHTTSTTEEEEEEEECC------HHHHH--HHH---HTTCEEEEEESBGGGGGG
T ss_pred HHHHHHHHcCCCcEEEEEECCCC------chhhc--ccc---cCCCEEEEEcCCHHHHHH
Confidence 12222334564 78999997654 11121 111 158899999998776543
No 312
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.25 E-value=0.024 Score=54.10 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..++|+|++|+|||||++.+
T Consensus 5 ~ki~ivG~~g~GKStLl~~l 24 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNAL 24 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999999
No 313
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.25 E-value=0.024 Score=53.89 Aligned_cols=20 Identities=15% Similarity=0.399 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+||+||||||+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L 22 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREF 22 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHH
Confidence 47899999999999999998
No 314
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.24 E-value=0.14 Score=53.79 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..+++.||.|+||||+.+.+
T Consensus 49 ~~~L~~G~~G~GKT~la~~l 68 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKAL 68 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHHHH
Confidence 46788899999999999999
No 315
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.24 E-value=0.075 Score=55.43 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+||.|+||||+++.+
T Consensus 48 ~~ll~G~~G~GKT~la~~l 66 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALAL 66 (327)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHH
Confidence 4899999999999999999
No 316
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.23 E-value=0.15 Score=51.36 Aligned_cols=123 Identities=19% Similarity=0.219 Sum_probs=61.0
Q ss_pred ccCceEEEEEcCCCCCHHHHHHHHHhhhhhhh--hceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchHHHHHHHHH
Q 004463 265 ECETRVVVITGPNTGGKTASMKTLGLASLMSK--AGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDI 342 (752)
Q Consensus 265 ~~g~~~~~I~GpNGsGKSTlLK~iGli~~~aq--~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~krl~~i 342 (752)
.+| .+.+++||=|+||||.|-.+..-..-+. .-++.|.-. ...+ -..+..++|..-.. ..++... .+
T Consensus 26 ~~G-~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d-~R~g-e~~i~s~~g~~~~a-~~~~~~~-------~~ 94 (214)
T 2j9r_A 26 QNG-WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID-NRYS-EEDVVSHNGLKVKA-VPVSASK-------DI 94 (214)
T ss_dssp CSC-EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-------------------CCE-EECSSGG-------GG
T ss_pred CCC-EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC-Ccch-HHHHHhhcCCeeEE-eecCCHH-------HH
Confidence 457 8999999999999998766522222211 122334432 1111 22455555543111 0111111 12
Q ss_pred HHccC-CCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecch-----------hHHhhhccccccc
Q 004463 343 LELVS-RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA-----------DLSCLKDKDTRFE 404 (752)
Q Consensus 343 ~~la~-~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~-----------~l~~~a~~~~~i~ 404 (752)
...+. +.++|++||.-- +|+..- + +++.+.+.+..||++-++. .|..+||.+..+.
T Consensus 95 ~~~~~~~~dvViIDEaQF-~~~~~V----~-~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 95 FKHITEEMDVIAIDEVQF-FDGDIV----E-VVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp GGGCCSSCCEEEECCGGG-SCTTHH----H-HHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred HHHHhcCCCEEEEECccc-CCHHHH----H-HHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 22233 478999999866 665432 2 3444555688999999943 2455777765544
No 317
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.21 E-value=0.024 Score=54.46 Aligned_cols=20 Identities=40% Similarity=0.461 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+||.||||||+.+.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L 23 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLA 23 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999998
No 318
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.14 E-value=0.025 Score=54.03 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|++|+|||||++.+
T Consensus 8 ~~i~lvG~~gvGKStL~~~l 27 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNAL 27 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 319
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.08 E-value=0.023 Score=54.27 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+||+||||||+.+.+
T Consensus 6 ~i~i~G~~GsGKsTla~~L 24 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARAL 24 (175)
T ss_dssp CEEEECCTTSCHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 5899999999999999999
No 320
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.03 E-value=0.29 Score=48.50 Aligned_cols=64 Identities=16% Similarity=0.091 Sum_probs=40.2
Q ss_pred HHHHHHcc--CCCcEEEEeCCCCC--CChHhHHHHHHHHHHHHhcC--CcEEEEEecch--hHHhhhcccccccCC
Q 004463 339 IVDILELV--SRESLVLIDEIGSG--TDPSEGVALATSILQYLRDR--VGLAVVTTHYA--DLSCLKDKDTRFENA 406 (752)
Q Consensus 339 l~~i~~la--~~~~LlLLDEp~~g--lD~~~~~~L~~all~~l~~~--~~tviitTH~~--~l~~~a~~~~~i~~g 406 (752)
+..++..+ ...+||||||++.. ++......+. +.+.++ ...+|+|+++. ++..+||.+-.|..-
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~----~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~v 180 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVI----SALNARPGHQTVIITGRGCHRDILDLADTVSELRPV 180 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHH----HHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCCS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHH----HHHHhCcCCCEEEEECCCCcHHHHHhCcceeeecce
Confidence 44455555 56799999999762 2222223333 344433 46899999984 378888887766543
No 321
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.00 E-value=0.026 Score=54.75 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
+++|+|+.||||||+.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L 20 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEI 20 (205)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHH
Confidence 5899999999999999998
No 322
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=93.90 E-value=0.03 Score=64.23 Aligned_cols=29 Identities=17% Similarity=0.383 Sum_probs=23.6
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
++.+.+... .-++|.|..||||||+|+++
T Consensus 206 pv~~DL~k~-pHlLIaG~TGSGKS~~L~tl 234 (574)
T 2iut_A 206 PIITDLAKM-PHLLVAGTTGSGKSVGVNAM 234 (574)
T ss_dssp EEEEEGGGS-CCEEEECCTTSSHHHHHHHH
T ss_pred EEEEEhhhC-CeeEEECCCCCCHHHHHHHH
Confidence 445555555 56899999999999999998
No 323
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.90 E-value=0.072 Score=64.28 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 004463 269 RVVVITGPNTGGKTASMKTLGL 290 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iGl 290 (752)
..++|+||+|+|||++.+.++-
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999943
No 324
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.86 E-value=0.022 Score=58.37 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=20.8
Q ss_pred ccCceEEEEEcCCCCCHHHHHHHH
Q 004463 265 ECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 265 ~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
..+ .+++|+||+||||||+.+.+
T Consensus 30 ~~~-~~i~l~G~~GsGKSTla~~L 52 (253)
T 2p5t_B 30 KQP-IAILLGGQSGAGKTTIHRIK 52 (253)
T ss_dssp SSC-EEEEEESCGGGTTHHHHHHH
T ss_pred cCC-eEEEEECCCCCCHHHHHHHH
Confidence 455 78999999999999999998
No 325
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.83 E-value=0.029 Score=53.84 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|++|+|||||++.+
T Consensus 4 kv~ivG~~gvGKStLl~~l 22 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQL 22 (184)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999999
No 326
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.82 E-value=0.033 Score=54.10 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+|+.||||||+.+.+
T Consensus 9 ~~I~i~G~~GsGKST~~~~L 28 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALL 28 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999999
No 327
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.80 E-value=0.029 Score=58.78 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=20.2
Q ss_pred cCceEEEEEcCCCCCHHHHHHHH
Q 004463 266 CETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 266 ~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
.+ .+++|+||+||||||+.+.+
T Consensus 32 ~~-~livl~G~sGsGKSTla~~L 53 (287)
T 1gvn_B 32 SP-TAFLLGGQPGSGKTSLRSAI 53 (287)
T ss_dssp SC-EEEEEECCTTSCTHHHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHH
Confidence 45 78999999999999999998
No 328
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.50 E-value=0.037 Score=53.85 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=20.2
Q ss_pred cCceEEEEEcCCCCCHHHHHHHH
Q 004463 266 CETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 266 ~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
+| .+++|+||.||||||+.+.+
T Consensus 3 ~~-~~I~l~G~~GsGKsT~~~~L 24 (204)
T 2v54_A 3 RG-ALIVFEGLDKSGKTTQCMNI 24 (204)
T ss_dssp CC-CEEEEECCTTSSHHHHHHHH
T ss_pred CC-cEEEEEcCCCCCHHHHHHHH
Confidence 45 68999999999999999998
No 329
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.48 E-value=0.036 Score=56.51 Aligned_cols=20 Identities=35% Similarity=0.586 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-+++|+||+||||||+.+.+
T Consensus 10 ~~i~i~G~~GsGKsTla~~l 29 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGL 29 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999999
No 330
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.45 E-value=0.018 Score=56.61 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
+++|+||+||||||+++.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L 20 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKL 20 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 6899999999999999998
No 331
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.40 E-value=0.043 Score=52.69 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+|+.||||||+.+.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L 23 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARI 23 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999988
No 332
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.37 E-value=0.039 Score=53.29 Aligned_cols=19 Identities=21% Similarity=0.499 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
+++|+||.||||||+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L 20 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLL 20 (197)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999998
No 333
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.35 E-value=0.036 Score=53.16 Aligned_cols=20 Identities=35% Similarity=0.383 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+||.||||||+.+.+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l 31 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKEL 31 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHH
Confidence 67899999999999999998
No 334
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.33 E-value=0.042 Score=52.69 Aligned_cols=20 Identities=20% Similarity=0.420 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+||.||||||+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L 21 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKV 21 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999998
No 335
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.28 E-value=0.16 Score=60.80 Aligned_cols=100 Identities=17% Similarity=0.249 Sum_probs=54.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhhhhhhhceeecCCCCCCchHHHHHHHHcCCchhhhcCcccchH-HHHHHHH--HHHc
Q 004463 269 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG-HISRIVD--ILEL 345 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iGli~~~aq~G~~vP~~~~~~l~~~d~i~~~ig~~~~i~~~~stlSg-g~krl~~--i~~l 345 (752)
+-++|.||.|+|||+|.|.++- .+|.++ ..+... .+ .+.+.| .++++.. -.+.
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~-----elg~~~-----~~v~~~-~l-------------~sk~~gese~~lr~lF~~A~ 294 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVAN-----ETGAFF-----FLINGP-EI-------------MSKLAGESESNLRKAFEEAE 294 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHT-----TTTCEE-----EEEEHH-HH-------------HSSCTTHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHH-----HhCCeE-----EEEEhH-Hh-------------hcccchHHHHHHHHHHHHHH
Confidence 4589999999999999999921 122211 111111 11 122333 2334433 3556
Q ss_pred cCCCcEEEEeCCCCC------CChHhHHHHHHHHHHHHh---c-CCcEEEEEecchh
Q 004463 346 VSRESLVLIDEIGSG------TDPSEGVALATSILQYLR---D-RVGLAVVTTHYAD 392 (752)
Q Consensus 346 a~~~~LlLLDEp~~g------lD~~~~~~L~~all~~l~---~-~~~tviitTH~~~ 392 (752)
...|.+|++||.-+= .+-.....+...++..+. . .+..||.+|...+
T Consensus 295 ~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d 351 (806)
T 3cf2_A 295 KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN 351 (806)
T ss_dssp TSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTT
T ss_pred HcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChh
Confidence 678999999997321 111122233333444332 2 2456788888765
No 336
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.27 E-value=0.047 Score=53.24 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+||.||||||+.+.+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L 24 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLL 24 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 68999999999999999999
No 337
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.24 E-value=0.042 Score=53.57 Aligned_cols=19 Identities=32% Similarity=0.730 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
+++|+||+||||||+.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~l 22 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRV 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 338
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.20 E-value=0.046 Score=52.73 Aligned_cols=22 Identities=14% Similarity=0.348 Sum_probs=20.1
Q ss_pred cCceEEEEEcCCCCCHHHHHHHH
Q 004463 266 CETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 266 ~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
++ .+++|+||.||||||+.+.+
T Consensus 8 ~~-~~I~l~G~~GsGKsT~~~~L 29 (196)
T 2c95_A 8 KT-NIIFVVGGPGSGKGTQCEKI 29 (196)
T ss_dssp TS-CEEEEEECTTSSHHHHHHHH
T ss_pred CC-CEEEEECCCCCCHHHHHHHH
Confidence 45 68999999999999999998
No 339
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.00 E-value=0.039 Score=52.75 Aligned_cols=20 Identities=40% Similarity=0.556 Sum_probs=15.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+|+.||||||+.+.+
T Consensus 6 ~~I~l~G~~GsGKST~a~~L 25 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTL 25 (183)
T ss_dssp CEEEEECCC----CHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999998
No 340
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.96 E-value=0.053 Score=53.11 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.3
Q ss_pred cCceEEEEEcCCCCCHHHHHHHH
Q 004463 266 CETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 266 ~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
.| .+++|+|+.||||||+.+.+
T Consensus 9 ~~-~~I~l~G~~GsGKST~~~~L 30 (212)
T 2wwf_A 9 KG-KFIVFEGLDRSGKSTQSKLL 30 (212)
T ss_dssp CS-CEEEEEESTTSSHHHHHHHH
T ss_pred cC-CEEEEEcCCCCCHHHHHHHH
Confidence 46 78999999999999999998
No 341
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.88 E-value=0.036 Score=63.94 Aligned_cols=45 Identities=16% Similarity=0.227 Sum_probs=32.9
Q ss_pred CCCCCCEEEEccc-------CCeeEEEEEeeCCCceEEEEECceEEEEecCCcc
Q 004463 586 TPQFGEQVHVKSL-------GDKLATVVEVPGDDDTVLVQYGKMRVRVKKNNIR 632 (752)
Q Consensus 586 ~~~vGd~V~v~~~-------~~~~g~V~~i~~~~~~~~V~~g~~k~~v~~~~l~ 632 (752)
.+.+||.|.+... ++..|.|+.+.+ +.+.|.+.+-.+.++.+++.
T Consensus 435 ~~~~Gd~V~~~~N~~~~~v~NGdiG~i~~~~~--~~l~v~fdg~~v~~~~~~l~ 486 (574)
T 3e1s_A 435 EARPGDTVVQTKNDYNNEIFNGTLGMVLKAEG--ARLTVDFDGNVVELTGAELF 486 (574)
T ss_dssp EECTTCEEEECSCBTTTTBCTTCEEEEEEECS--SCEEEEETTEEEEECGGGGT
T ss_pred EEecCCEEEEeecCcccceecCceeEEEcCCC--CEEEEEECCeEEEEchHHhh
Confidence 4689999988542 234699986543 57999998888888777664
No 342
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=92.85 E-value=0.22 Score=52.22 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=19.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHH
Q 004463 267 ETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 267 g~~~~~I~GpNGsGKSTlLK~i 288 (752)
| .+++|+||-|+|||||++.+
T Consensus 31 ~-~~v~i~G~~G~GKT~Ll~~~ 51 (350)
T 2qen_A 31 Y-PLTLLLGIRRVGKSSLLRAF 51 (350)
T ss_dssp C-SEEEEECCTTSSHHHHHHHH
T ss_pred C-CeEEEECCCcCCHHHHHHHH
Confidence 5 68999999999999999998
No 343
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.84 E-value=0.053 Score=52.03 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..++|+||.||||||+.+.+
T Consensus 6 ~~i~l~G~~GsGKst~a~~L 25 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQL 25 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999998
No 344
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=92.83 E-value=0.075 Score=57.85 Aligned_cols=19 Identities=32% Similarity=0.380 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|++|+|||||++.+
T Consensus 3 ~v~IVG~pnvGKSTL~n~L 21 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNAL 21 (368)
T ss_dssp SEEEECCSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3789999999999999999
No 345
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.73 E-value=0.058 Score=52.87 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=20.9
Q ss_pred ccCceEEEEEcCCCCCHHHHHHHH
Q 004463 265 ECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 265 ~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
.++ .+++|+|+.||||||+.+.+
T Consensus 7 ~~~-~~I~l~G~~GsGKsT~~~~L 29 (215)
T 1nn5_A 7 RRG-ALIVLEGVDRAGKSTQSRKL 29 (215)
T ss_dssp CCC-CEEEEEESTTSSHHHHHHHH
T ss_pred cCC-cEEEEECCCCCCHHHHHHHH
Confidence 456 78999999999999999998
No 346
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.69 E-value=0.059 Score=52.23 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+|++|+|||||+..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L 24 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKW 24 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999887
No 347
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.60 E-value=0.16 Score=58.81 Aligned_cols=20 Identities=40% Similarity=0.622 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+||.|+||||++..+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~l 184 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKL 184 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 68999999999999999887
No 348
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=92.54 E-value=0.4 Score=51.04 Aligned_cols=115 Identities=12% Similarity=0.070 Sum_probs=57.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHH-hhhhhhh-hc------eeecCCC-CCCchHHHHHHHHcCCchhhhcCcccchHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTLG-LASLMSK-AG------LYLPAKN-HPRLPWFDLILADIGDHQSLEQNLSTFSGHISRI 339 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iG-li~~~aq-~G------~~vP~~~-~~~l~~~d~i~~~ig~~~~i~~~~stlSgg~krl 339 (752)
..+.|+||.|+|||++.+.+. .+.-.+. .+ .++-+.. ...-..+..++..+.... .. ..-+ +..+
T Consensus 46 ~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~-~~---~~~~--~~~L 119 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKEN-LC---GDIS--LEAL 119 (318)
T ss_dssp CEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC------CCCC--HHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCC-CC---chHH--HHHH
Confidence 578999999999999999992 2211111 01 1222211 112234666666653221 00 0001 1222
Q ss_pred HHHHH----ccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcC--CcEEEEEecchhH
Q 004463 340 VDILE----LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR--VGLAVVTTHYADL 393 (752)
Q Consensus 340 ~~i~~----la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~--~~tviitTH~~~l 393 (752)
..... .-..+-+++|||.-.=. ....|.. +++..... ..++|.+++.+++
T Consensus 120 ~~~f~~~~~~~~~~~ii~lDE~d~l~---~q~~L~~-l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 120 NFYITNVPKAKKRKTLILIQNPENLL---SEKILQY-FEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHSCGGGSCEEEEEEECCSSSC---CTHHHHH-HHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHhhhccCCceEEEEecHHHhh---cchHHHH-HHhcccccCCcEEEEEEecCccc
Confidence 22222 23567799999987655 2233433 54432222 3467777877653
No 349
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.54 E-value=0.063 Score=51.42 Aligned_cols=20 Identities=25% Similarity=0.399 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+|+.||||||+.+.+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L 26 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANI 26 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999998
No 350
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.43 E-value=0.11 Score=51.36 Aligned_cols=107 Identities=16% Similarity=0.121 Sum_probs=60.4
Q ss_pred cCceEEEEEcCCCCCHH-HHHHHHHhhhhhhhhceee-cCCCCCCchHHHHHHHHcCCchh--hhcCcccchHHHHHHHH
Q 004463 266 CETRVVVITGPNTGGKT-ASMKTLGLASLMSKAGLYL-PAKNHPRLPWFDLILADIGDHQS--LEQNLSTFSGHISRIVD 341 (752)
Q Consensus 266 ~g~~~~~I~GpNGsGKS-TlLK~iGli~~~aq~G~~v-P~~~~~~l~~~d~i~~~ig~~~~--i~~~~stlSgg~krl~~ 341 (752)
.| .+..|+||-|+||| .||+.++....-.+..+++ |.- ....+ +.+...+|..-. .......|-.
T Consensus 19 ~g-~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~-D~R~~--~~i~S~~g~~~~A~~~~~~~d~~~------- 87 (195)
T 1w4r_A 19 RG-QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK-DTRYS--SSFCTHDRNTMEALPACLLRDVAQ------- 87 (195)
T ss_dssp CC-EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETT-CCCGG--GSCCHHHHHHSEEEEESSGGGGHH-------
T ss_pred ce-EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcccc-Cccch--hhhhhccCCcccceecCCHHHHHH-------
Confidence 46 89999999999999 6778886665544444444 442 12222 223333332100 0111112211
Q ss_pred HHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhH
Q 004463 342 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL 393 (752)
Q Consensus 342 i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l 393 (752)
...+.++|++||.=-= +. +.+ +++.+.+.|..||++.++.+.
T Consensus 88 ---~~~~~DvIlIDEaQFf--k~----~ve-~~~~L~~~gk~VI~~GL~~DF 129 (195)
T 1w4r_A 88 ---EALGVAVIGIDEGQFF--PD----IVE-FCEAMANAGKTVIVAALDGTF 129 (195)
T ss_dssp ---HHHTCSEEEESSGGGC--TT----HHH-HHHHHHHTTCEEEEEEESBCT
T ss_pred ---hccCCCEEEEEchhhh--HH----HHH-HHHHHHHCCCeEEEEeccccc
Confidence 1235699999997433 22 222 335566679999999998754
No 351
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.41 E-value=0.065 Score=51.47 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
+++|+|+.||||||+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L 20 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKL 20 (195)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999998
No 352
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.39 E-value=0.064 Score=52.87 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+||.||||||+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 353
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.30 E-value=0.059 Score=50.96 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+|+.||||||+.+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGREL 22 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 354
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.24 E-value=0.076 Score=54.53 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+|++||||||+.+.+
T Consensus 5 ~lIvl~G~pGSGKSTla~~L 24 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNL 24 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHH
Confidence 68999999999999999998
No 355
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.20 E-value=0.074 Score=50.05 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.||||||+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLL 20 (168)
T ss_dssp EEEEESCTTSCHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5899999999999999998
No 356
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=92.18 E-value=0.064 Score=58.29 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=19.4
Q ss_pred cCceEEEEEcCCCCCHHHHHHHH
Q 004463 266 CETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 266 ~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
.|..+++|+|+||+||||||+.+
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L 199 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSL 199 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHH
Confidence 35456999999999999999999
No 357
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.14 E-value=0.53 Score=48.76 Aligned_cols=18 Identities=39% Similarity=0.532 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHH
Q 004463 271 VVITGPNTGGKTASMKTL 288 (752)
Q Consensus 271 ~~I~GpNGsGKSTlLK~i 288 (752)
++|+||.|+||||+++.+
T Consensus 45 ~ll~G~~G~GKt~la~~l 62 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCL 62 (323)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHH
Confidence 899999999999999998
No 358
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.14 E-value=0.028 Score=60.85 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=22.5
Q ss_pred eeEEEccCceE--EEEEcCCCCCHHHHHHHH
Q 004463 260 IDIKVECETRV--VVITGPNTGGKTASMKTL 288 (752)
Q Consensus 260 idl~l~~g~~~--~~I~GpNGsGKSTlLK~i 288 (752)
+++.+..| ++ ++|+||+|+||||+.+++
T Consensus 15 l~~~i~~g-~~~~i~l~G~~G~GKTTl~~~l 44 (359)
T 2ga8_A 15 LDNRIEDN-YRVCVILVGSPGSGKSTIAEEL 44 (359)
T ss_dssp HHHTTTTC-SCEEEEEECCTTSSHHHHHHHH
T ss_pred HHHHhccC-CeeEEEEECCCCCcHHHHHHHH
Confidence 34445556 44 899999999999999999
No 359
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.06 E-value=0.23 Score=55.11 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTLG 289 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iG 289 (752)
.+++|+||+|+||||++..++
T Consensus 100 ~vI~ivG~~GvGKTTla~~La 120 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLA 120 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999884
No 360
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.05 E-value=0.075 Score=51.35 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=20.0
Q ss_pred cCceEEEEEcCCCCCHHHHHHHH
Q 004463 266 CETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 266 ~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
.+ .+++|+||.||||||+.+.+
T Consensus 11 ~~-~~I~l~G~~GsGKsT~a~~L 32 (199)
T 2bwj_A 11 KC-KIIFIIGGPGSGKGTQCEKL 32 (199)
T ss_dssp HS-CEEEEEECTTSSHHHHHHHH
T ss_pred CC-CEEEEECCCCCCHHHHHHHH
Confidence 45 68999999999999999998
No 361
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.02 E-value=0.076 Score=52.42 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+||.||||||+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 362
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.92 E-value=0.084 Score=51.47 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+||.||||||+.+.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L 35 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKL 35 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999988
No 363
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.90 E-value=0.08 Score=52.86 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+||.||||||+.+.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~L 27 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRI 27 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999998
No 364
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.87 E-value=0.083 Score=51.01 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=18.5
Q ss_pred eeeEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 259 PIDIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 259 ~idl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
++++..... .++|+|++|+|||||++.+
T Consensus 16 ~~~~~~~~~--ki~~vG~~~vGKSsli~~l 43 (190)
T 1m2o_B 16 SLGLWNKHG--KLLFLGLDNAGKTTLLHML 43 (190)
T ss_dssp --------C--EEEEEESTTSSHHHHHHHH
T ss_pred HhhccCCcc--EEEEECCCCCCHHHHHHHH
Confidence 455555444 6899999999999999998
No 365
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.70 E-value=0.084 Score=54.42 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..++|+|++|+|||||++.+
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l 23 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNAL 23 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999999
No 366
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=91.62 E-value=0.084 Score=58.62 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|+||+|||||++.+
T Consensus 181 ~kvaivG~~gvGKSTLln~l 200 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAI 200 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 367
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.60 E-value=0.09 Score=52.58 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
+++|+||.||||||+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLV 20 (223)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999998
No 368
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.46 E-value=0.11 Score=50.81 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+||.||||||+.+.+
T Consensus 21 ~~I~l~G~~GsGKST~a~~L 40 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKL 40 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999998
No 369
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.43 E-value=0.1 Score=51.71 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+||.||||||+.+.+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~L 24 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNL 24 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 67999999999999999998
No 370
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.41 E-value=0.032 Score=53.77 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 25 ki~v~G~~~~GKSsli~~l 43 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRY 43 (191)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 4799999999999999998
No 371
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.36 E-value=0.086 Score=52.37 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+||.||||||+.+.+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~L 25 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELI 25 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999998
No 372
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.29 E-value=0.061 Score=56.47 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=16.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+||.||||||+.+.+
T Consensus 6 ~iIgItG~sGSGKSTva~~L 25 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTF 25 (290)
T ss_dssp CEEEEESCC---CCTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999998
No 373
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=91.22 E-value=0.79 Score=52.22 Aligned_cols=116 Identities=15% Similarity=0.153 Sum_probs=57.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhh-hh-hhhh--c-eeecCCCCCCchH---HHHHHHHcCCchhh-hcCcccchHHHHH
Q 004463 268 TRVVVITGPNTGGKTASMKTLGLA-SL-MSKA--G-LYLPAKNHPRLPW---FDLILADIGDHQSL-EQNLSTFSGHISR 338 (752)
Q Consensus 268 ~~~~~I~GpNGsGKSTlLK~iGli-~~-~aq~--G-~~vP~~~~~~l~~---~d~i~~~ig~~~~i-~~~~stlSgg~kr 338 (752)
..+++|+||-|.|||||++.+.-- .. ..+. + .++.......-.+ +..+...++..... .....++..-..+
T Consensus 147 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~ 226 (591)
T 1z6t_A 147 PGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDR 226 (591)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHH
Confidence 479999999999999999988211 11 1111 1 2333332111112 22223334321111 1112222111123
Q ss_pred HHHHHHccCCCcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHHh
Q 004463 339 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC 395 (752)
Q Consensus 339 l~~i~~la~~~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~~ 395 (752)
+...+.-...|-||+||..-. . . .++.+ ..++.||+||.+.....
T Consensus 227 l~~~l~~~~~~~LLVLDdv~~---~---~-----~l~~l-~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 227 LRILMLRKHPRSLLILDDVWD---S---W-----VLKAF-DSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHHTCTTCEEEEEEECC---H---H-----HHHTT-CSSCEEEEEESCGGGGT
T ss_pred HHHHHccCCCCeEEEEeCCCC---H---H-----HHHHh-cCCCeEEEECCCcHHHH
Confidence 333333333688999998742 1 1 22333 34778999998866443
No 374
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.20 E-value=0.12 Score=47.74 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 7 ~i~v~G~~~~GKssl~~~l 25 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRY 25 (168)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4799999999999999998
No 375
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.20 E-value=0.16 Score=55.22 Aligned_cols=20 Identities=25% Similarity=0.210 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.-++|+||+|+||||+++.+
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~ 55 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKML 55 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHH
Confidence 46899999999999999999
No 376
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.16 E-value=0.11 Score=51.24 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-+++|||+.||||||+.+.+
T Consensus 13 ~iIgltG~~GSGKSTva~~L 32 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEIL 32 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999998
No 377
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=91.12 E-value=1.1 Score=47.59 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..+.++||.|.||||+.+.+
T Consensus 25 ~a~L~~G~~G~GKt~~a~~l 44 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYAL 44 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHH
T ss_pred eeEEEECCCCchHHHHHHHH
Confidence 46899999999999999998
No 378
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.01 E-value=0.11 Score=52.93 Aligned_cols=20 Identities=15% Similarity=0.376 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+||.||||||+.+.+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L 42 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKI 42 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999988
No 379
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.99 E-value=0.12 Score=48.82 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+|+.||||||+.+.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~L 27 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQEL 27 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 58999999999999999998
No 380
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.96 E-value=0.12 Score=49.48 Aligned_cols=20 Identities=35% Similarity=0.694 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|+.|+|||||++.+
T Consensus 49 ~~i~vvG~~g~GKSsll~~l 68 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLL 68 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 381
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=90.94 E-value=0.6 Score=49.28 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..+++.||.|+||||+.+.+
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~l 38 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLEL 38 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999998
No 382
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.93 E-value=0.14 Score=47.47 Aligned_cols=19 Identities=32% Similarity=0.351 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 8 ~i~v~G~~~~GKssli~~l 26 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRY 26 (170)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4799999999999999998
No 383
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.91 E-value=0.11 Score=54.16 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 004463 268 TRVVVITGPNTGGKTASMKTLG 289 (752)
Q Consensus 268 ~~~~~I~GpNGsGKSTlLK~iG 289 (752)
..+++|+|+.||||||+.+.+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999993
No 384
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=90.90 E-value=0.14 Score=47.94 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 11 ~i~v~G~~~~GKssl~~~l 29 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRF 29 (181)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999999
No 385
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.87 E-value=0.11 Score=49.68 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|++|+|||||++.+
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l 36 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQL 36 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 386
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.83 E-value=0.16 Score=47.01 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l 23 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRF 23 (172)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999999
No 387
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.78 E-value=0.68 Score=54.79 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTLG 289 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~iG 289 (752)
.++|+||.|+|||++.+.++
T Consensus 490 ~~ll~G~~GtGKT~la~~la 509 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLS 509 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 68999999999999999994
No 388
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.75 E-value=0.12 Score=53.61 Aligned_cols=20 Identities=15% Similarity=0.399 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+||+||||||+.+.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L 22 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREF 22 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 389
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.74 E-value=0.12 Score=49.59 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+|+.||||||+.+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRL 22 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 36899999999999999998
No 390
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.71 E-value=0.15 Score=47.21 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l 23 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRF 23 (170)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999998
No 391
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.68 E-value=0.15 Score=47.23 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 8 ~i~v~G~~~~GKSsli~~l 26 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRF 26 (170)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4799999999999999999
No 392
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.61 E-value=0.087 Score=49.82 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|++|+|||||++.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l 38 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRL 38 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 393
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=90.53 E-value=0.24 Score=53.81 Aligned_cols=20 Identities=25% Similarity=0.222 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|++++|||||++.+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~L 22 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNAL 22 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999999
No 394
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.52 E-value=0.13 Score=50.86 Aligned_cols=19 Identities=16% Similarity=0.406 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+||.||||||+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFI 20 (214)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999998
No 395
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.26 E-value=0.14 Score=47.92 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|+.|+|||||++.+
T Consensus 9 ~~i~v~G~~~~GKSsli~~l 28 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRY 28 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999988
No 396
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.24 E-value=0.16 Score=50.79 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.5
Q ss_pred cCceEEEEEcCCCCCHHHHHHHH
Q 004463 266 CETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 266 ~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
+| .+++|.||.||||||+++.+
T Consensus 5 ~g-~~i~~eG~~gsGKsT~~~~l 26 (213)
T 4edh_A 5 TG-LFVTLEGPEGAGKSTNRDYL 26 (213)
T ss_dssp CC-EEEEEECSTTSSHHHHHHHH
T ss_pred Cc-eEEEEEcCCCCCHHHHHHHH
Confidence 47 79999999999999999998
No 397
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=90.23 E-value=0.16 Score=51.50 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+||.||||||+.+.+
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L 49 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNL 49 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999998
No 398
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.22 E-value=0.11 Score=50.44 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=21.2
Q ss_pred eeEEEccCceEEEEEcCCCCCHHHHHHHH
Q 004463 260 IDIKVECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 260 idl~l~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
+++..... .++|+|++|+|||||++.+
T Consensus 19 ~~~~~~~~--ki~lvG~~~vGKSsLi~~l 45 (198)
T 1f6b_A 19 LGLYKKTG--KLVFLGLDNAGKTTLLHML 45 (198)
T ss_dssp HTCTTCCE--EEEEEEETTSSHHHHHHHH
T ss_pred hhccCCCc--EEEEECCCCCCHHHHHHHH
Confidence 34443333 5799999999999999999
No 399
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.21 E-value=0.14 Score=46.98 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++++|+.|+|||||++.+
T Consensus 5 ~i~v~G~~~~GKssl~~~l 23 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQL 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999998
No 400
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.19 E-value=0.17 Score=46.52 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 3 ki~v~G~~~~GKSsli~~l 21 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRL 21 (161)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999999
No 401
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.05 E-value=0.15 Score=46.84 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l 23 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQF 23 (167)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999998
No 402
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.02 E-value=0.18 Score=46.47 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 5 ki~v~G~~~~GKssli~~l 23 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQF 23 (167)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999999
No 403
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.88 E-value=0.16 Score=46.79 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 6 ~i~v~G~~~~GKssl~~~l 24 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQF 24 (168)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999998
No 404
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=89.87 E-value=0.17 Score=49.30 Aligned_cols=21 Identities=38% Similarity=0.658 Sum_probs=18.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHH
Q 004463 267 ETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 267 g~~~~~I~GpNGsGKSTlLK~i 288 (752)
| .+.+|+||.|+||||+|-.+
T Consensus 3 g-~i~vi~G~~gsGKTT~ll~~ 23 (184)
T 2orw_A 3 G-KLTVITGPMYSGKTTELLSF 23 (184)
T ss_dssp C-CEEEEEESTTSSHHHHHHHH
T ss_pred c-EEEEEECCCCCCHHHHHHHH
Confidence 5 68999999999999997443
No 405
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=89.78 E-value=0.16 Score=47.08 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l 22 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIF 22 (166)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999999
No 406
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=89.72 E-value=0.16 Score=47.46 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 9 ~i~v~G~~~~GKSsli~~l 27 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRY 27 (177)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999998
No 407
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=89.72 E-value=0.13 Score=49.63 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=4.2
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 22 ~i~v~G~~~~GKssli~~l 40 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMF 40 (208)
T ss_dssp EEEEC--------------
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999998
No 408
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.71 E-value=0.14 Score=51.89 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=18.3
Q ss_pred ccCceEEEEEcCCCCCHHHHHHHH
Q 004463 265 ECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 265 ~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
.+| .+++|.||.||||||+.+.+
T Consensus 23 ~~g-~~I~~eG~~GsGKsT~~~~l 45 (227)
T 3v9p_A 23 ARG-KFITFEGIDGAGKTTHLQWF 45 (227)
T ss_dssp CCC-CEEEEECCC---CHHHHHHH
T ss_pred cCC-eEEEEECCCCCCHHHHHHHH
Confidence 467 89999999999999999998
No 409
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=89.69 E-value=1.1 Score=53.22 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 004463 270 VVVITGPNTGGKTASMKTLGL 290 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~iGl 290 (752)
.++|+||.|+|||++.+.++-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999943
No 410
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=89.67 E-value=0.2 Score=47.49 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 3 ki~v~G~~~~GKSsli~~l 21 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRL 21 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3789999999999999999
No 411
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.66 E-value=0.18 Score=47.22 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..++|+|+.|+|||||++.+
T Consensus 9 ~~i~v~G~~~~GKssl~~~l 28 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAI 28 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999998
No 412
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.64 E-value=0.2 Score=47.42 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 13 ki~v~G~~~~GKSsli~~l 31 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQY 31 (195)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999999
No 413
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=89.63 E-value=0.17 Score=47.02 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 4 ki~ivG~~~~GKSsli~~l 22 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTF 22 (169)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999998
No 414
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.60 E-value=0.092 Score=62.31 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTLG 289 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iG 289 (752)
.-++|+||.|+||||+++.++
T Consensus 208 ~~vlL~G~~GtGKT~la~~la 228 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIAEGLA 228 (758)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHH
Confidence 568999999999999999993
No 415
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.59 E-value=0.16 Score=46.94 Aligned_cols=19 Identities=16% Similarity=0.359 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l 23 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRF 23 (170)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4799999999999999999
No 416
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.55 E-value=0.17 Score=47.12 Aligned_cols=19 Identities=32% Similarity=0.323 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 6 ki~i~G~~~vGKSsl~~~l 24 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLF 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHH
Confidence 4899999999999999998
No 417
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=89.47 E-value=0.21 Score=47.47 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 9 ki~v~G~~~~GKSsli~~l 27 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRL 27 (208)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 418
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=89.47 E-value=0.21 Score=46.67 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 16 ~i~v~G~~~~GKssli~~l 34 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRF 34 (179)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999998
No 419
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=89.38 E-value=0.19 Score=52.23 Aligned_cols=20 Identities=20% Similarity=0.405 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|++|+|||||++.+
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L 23 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLI 23 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999999
No 420
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=89.36 E-value=0.22 Score=45.98 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 8 ~i~v~G~~~~GKssli~~l 26 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRF 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999998
No 421
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=89.35 E-value=0.18 Score=46.80 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|+.|+|||||++.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l 27 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRL 27 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 45899999999999999999
No 422
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.31 E-value=0.2 Score=49.68 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..++|+||.||||||+.+.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~L 25 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFI 25 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999998
No 423
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.19 E-value=0.23 Score=47.56 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l 45 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRF 45 (193)
T ss_dssp EEEEESSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4799999999999999998
No 424
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.16 E-value=0.2 Score=51.07 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=20.5
Q ss_pred cCceEEEEEcCCCCCHHHHHHHH
Q 004463 266 CETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 266 ~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
+| .+++|.||.||||||+++.+
T Consensus 26 ~~-~~i~~eG~~GsGKsT~~~~l 47 (236)
T 3lv8_A 26 NA-KFIVIEGLEGAGKSTAIQVV 47 (236)
T ss_dssp CC-CEEEEEESTTSCHHHHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHH
Confidence 56 79999999999999999998
No 425
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=89.09 E-value=0.19 Score=48.09 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|+.|+|||||++.+
T Consensus 24 ~~i~v~G~~~~GKSsli~~l 43 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSL 43 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 56899999999999999999
No 426
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=89.04 E-value=0.19 Score=47.78 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|+.|+|||||++.+
T Consensus 24 ~~i~v~G~~~~GKSsli~~l 43 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNAL 43 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 427
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=88.99 E-value=0.22 Score=47.13 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 12 ki~v~G~~~~GKSsli~~l 30 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQF 30 (186)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 428
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.98 E-value=0.21 Score=49.95 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.1
Q ss_pred cCceEEEEEcCCCCCHHHHHHHH
Q 004463 266 CETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 266 ~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
+| .+++|.|+.||||||.++.+
T Consensus 2 ~g-~~i~~eG~~gsGKsT~~~~l 23 (213)
T 4tmk_A 2 RS-KYIVIEGLEGAGKTTARNVV 23 (213)
T ss_dssp CC-CEEEEEECTTSCHHHHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHH
Confidence 36 78999999999999999998
No 429
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=88.88 E-value=0.2 Score=46.88 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|+.|+|||||++.+
T Consensus 10 ~~i~v~G~~~~GKssli~~l 29 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQF 29 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999998
No 430
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.85 E-value=0.21 Score=55.04 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+||+||||||+.+.+
T Consensus 259 ~lIil~G~pGSGKSTla~~L 278 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEH 278 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 79999999999999999998
No 431
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=88.85 E-value=0.21 Score=47.23 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 6 ki~v~G~~~~GKSsli~~l 24 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQL 24 (189)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999999
No 432
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=88.83 E-value=0.18 Score=48.04 Aligned_cols=19 Identities=37% Similarity=0.615 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 16 ki~vvG~~~~GKssL~~~l 34 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWI 34 (198)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999988
No 433
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=88.77 E-value=0.25 Score=46.34 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 14 ki~v~G~~~~GKSsli~~l 32 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRF 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4799999999999999998
No 434
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=88.77 E-value=0.26 Score=54.88 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..++|+|+.|+|||||++.+
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l 43 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRI 43 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 47999999999999999999
No 435
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=88.75 E-value=0.22 Score=53.61 Aligned_cols=20 Identities=35% Similarity=0.554 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+||+|||||||.+.+
T Consensus 8 ~lI~I~GptgSGKTtla~~L 27 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEV 27 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHH
Confidence 47999999999999999988
No 436
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=88.64 E-value=0.21 Score=47.84 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~ 40 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRY 40 (184)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999876
No 437
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=88.60 E-value=0.26 Score=46.99 Aligned_cols=19 Identities=16% Similarity=0.329 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 18 ki~v~G~~~~GKSsli~~l 36 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRF 36 (196)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4899999999999999998
No 438
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=88.60 E-value=0.26 Score=47.48 Aligned_cols=20 Identities=35% Similarity=0.403 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|+.|+|||||++.+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l 28 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQY 28 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHH
Confidence 35899999999999999998
No 439
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=88.55 E-value=0.22 Score=46.87 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|+.|+|||||++.+
T Consensus 19 ~ki~v~G~~~~GKSsli~~l 38 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQF 38 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999998
No 440
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.52 E-value=0.22 Score=45.87 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHH
Q 004463 271 VVITGPNTGGKTASMKTL 288 (752)
Q Consensus 271 ~~I~GpNGsGKSTlLK~i 288 (752)
++|+|+.|+|||||++.+
T Consensus 3 i~~~G~~~~GKssl~~~l 20 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKL 20 (164)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 789999999999999998
No 441
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.45 E-value=0.26 Score=49.67 Aligned_cols=20 Identities=35% Similarity=0.405 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|.|+.||||||+++.+
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l 22 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLL 22 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 68999999999999999998
No 442
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=88.44 E-value=0.2 Score=49.38 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+|+.||||||+.+.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l 23 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRV 23 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999988
No 443
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.41 E-value=0.25 Score=48.32 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l 46 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRF 46 (201)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5799999999999999988
No 444
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=88.41 E-value=0.26 Score=46.88 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 9 ki~v~G~~~vGKSsli~~l 27 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVF 27 (184)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 445
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=88.41 E-value=3.4 Score=50.86 Aligned_cols=115 Identities=18% Similarity=0.236 Sum_probs=57.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhh-hhhh---hhce-eecCCCCCC---chHHHHHHHHcCCchhhhcCcccchHHHHH
Q 004463 267 ETRVVVITGPNTGGKTASMKTLGLA-SLMS---KAGL-YLPAKNHPR---LPWFDLILADIGDHQSLEQNLSTFSGHISR 338 (752)
Q Consensus 267 g~~~~~I~GpNGsGKSTlLK~iGli-~~~a---q~G~-~vP~~~~~~---l~~~d~i~~~ig~~~~i~~~~stlSgg~kr 338 (752)
+..+++|+|+-|.|||||.+.+.-- .... ..+. ++....... +..+..++..++........... ...+..
T Consensus 146 ~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~ 224 (1249)
T 3sfz_A 146 EPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPL-NIEEAK 224 (1249)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCS-SHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCC-CHHHHH
Confidence 3478999999999999999887211 0000 1122 444433211 11234444445433221111111 111111
Q ss_pred HHHHHHccCC--CcEEEEeCCCCCCChHhHHHHHHHHHHHHhcCCcEEEEEecchhHH
Q 004463 339 IVDILELVSR--ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS 394 (752)
Q Consensus 339 l~~i~~la~~--~~LlLLDEp~~glD~~~~~~L~~all~~l~~~~~tviitTH~~~l~ 394 (752)
-.+...+... +=||+||-.-. + .. ++.+ ..|+.||+||.+..+.
T Consensus 225 ~~l~~~l~~~~~~~LlvlDd~~~---~---~~-----~~~~-~~~~~ilvTtR~~~~~ 270 (1249)
T 3sfz_A 225 DRLRVLMLRKHPRSLLILDDVWD---P---WV-----LKAF-DNQCQILLTTRDKSVT 270 (1249)
T ss_dssp HHHHHHTSSSSCSCEEEEESCCC---H---HH-----HTTT-CSSCEEEEEESSTTTT
T ss_pred HHHHHHHhccCCCEEEEEecCCC---H---HH-----HHhh-cCCCEEEEEcCCHHHH
Confidence 1111223333 78999998642 2 11 1222 3478999999987654
No 446
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=88.38 E-value=0.23 Score=46.36 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|+.|+|||||++.+
T Consensus 16 ~~i~v~G~~~~GKSsli~~l 35 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQF 35 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999999
No 447
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.28 E-value=0.25 Score=52.80 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+||+|+||||+-+.+
T Consensus 6 ~~i~i~GptGsGKTtla~~L 25 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMAL 25 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999988
No 448
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=88.27 E-value=0.24 Score=46.36 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 8 ki~v~G~~~~GKssl~~~l 26 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCF 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4799999999999999998
No 449
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=88.23 E-value=0.25 Score=49.72 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.5
Q ss_pred ccCceEEEEEcCCCCCHHHHHHHH
Q 004463 265 ECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 265 ~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
... ++++|+||.||||||..+.|
T Consensus 27 ~k~-kiI~llGpPGsGKgTqa~~L 49 (217)
T 3umf_A 27 AKA-KVIFVLGGPGSGKGTQCEKL 49 (217)
T ss_dssp TSC-EEEEEECCTTCCHHHHHHHH
T ss_pred cCC-cEEEEECCCCCCHHHHHHHH
Confidence 445 79999999999999999988
No 450
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=88.09 E-value=0.24 Score=46.71 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 20 ki~v~G~~~~GKSsl~~~l 38 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQF 38 (183)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 451
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.07 E-value=0.26 Score=48.23 Aligned_cols=20 Identities=35% Similarity=0.694 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|+.|+|||||++.+
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l 32 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLL 32 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 452
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.05 E-value=0.24 Score=47.09 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 23 ki~vvG~~~~GKSsli~~l 41 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQL 41 (190)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5799999999999999999
No 453
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=87.98 E-value=0.3 Score=46.84 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 25 ki~vvG~~~~GKSsli~~l 43 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRF 43 (192)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5899999999999999998
No 454
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.89 E-value=0.26 Score=46.24 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 12 ~i~v~G~~~~GKssli~~l 30 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRF 30 (180)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5799999999999999998
No 455
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=87.87 E-value=0.29 Score=52.08 Aligned_cols=20 Identities=40% Similarity=0.629 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+||+|+|||||...+
T Consensus 4 ~~i~i~GptgsGKt~la~~L 23 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVML 23 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHH
Confidence 58899999999999999988
No 456
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=87.87 E-value=0.3 Score=49.28 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=21.0
Q ss_pred ccCceEEEEEcCCCCCHHHHHHHH
Q 004463 265 ECETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 265 ~~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
.+| .+++|.|+.||||||+.+.+
T Consensus 19 ~~~-~~i~~~G~~g~GKst~~~~l 41 (223)
T 3ld9_A 19 PGS-MFITFEGIDGSGKTTQSHLL 41 (223)
T ss_dssp CCC-EEEEEECSTTSSHHHHHHHH
T ss_pred CCC-eEEEEECCCCCCHHHHHHHH
Confidence 357 89999999999999999998
No 457
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=87.82 E-value=0.25 Score=47.92 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|+.|+|||||++.+
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l 43 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTF 43 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999998
No 458
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=87.74 E-value=0.26 Score=47.41 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|+.|+|||||++.+
T Consensus 15 ~ki~v~G~~~~GKSsli~~l 34 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQF 34 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999998
No 459
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=87.74 E-value=0.38 Score=54.43 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 004463 269 RVVVITGPNTGGKTASMKTLGL 290 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iGl 290 (752)
.-++|.||.|+|||++.+.++-
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGG
T ss_pred CeeEeecCchHHHHHHHHHHHH
Confidence 4689999999999999999943
No 460
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.63 E-value=0.31 Score=48.87 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..++|+|+.||||||+.+.+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~L 36 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKL 36 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999998
No 461
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=87.61 E-value=0.26 Score=46.38 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|+.|+|||||++.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l 26 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQF 26 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHH
Confidence 35899999999999999998
No 462
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=87.57 E-value=0.3 Score=47.96 Aligned_cols=20 Identities=30% Similarity=0.290 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..++|+|+.|+|||||++.+
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l 50 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERT 50 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 68999999999999999988
No 463
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=87.54 E-value=0.28 Score=46.20 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l 25 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISY 25 (186)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999998
No 464
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=87.45 E-value=0.28 Score=46.50 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|+.|+|||||++.+
T Consensus 19 ~~i~v~G~~~~GKssl~~~l 38 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKF 38 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 465
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=87.45 E-value=0.34 Score=46.20 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|+.|+|||||++.+
T Consensus 21 ~ki~v~G~~~~GKSsli~~l 40 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRF 40 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999998
No 466
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=87.37 E-value=0.27 Score=51.82 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-+++|+|+.|+|||||++.+
T Consensus 11 g~v~ivG~~nvGKSTLin~l 30 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNL 30 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 48999999999999999999
No 467
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.33 E-value=0.31 Score=51.78 Aligned_cols=20 Identities=35% Similarity=0.627 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
.+++|+||+|+|||||...+
T Consensus 11 ~~i~i~GptgsGKt~la~~L 30 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIEL 30 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHH
Confidence 68899999999999999988
No 468
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=87.29 E-value=0.34 Score=46.38 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 25 ki~~vG~~~~GKSsl~~~l 43 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAF 43 (194)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5899999999999999998
No 469
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.26 E-value=0.29 Score=46.83 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|+.|+|||||++.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l 28 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRF 28 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 35899999999999999999
No 470
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=87.16 E-value=0.34 Score=46.87 Aligned_cols=19 Identities=16% Similarity=0.326 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 10 ki~v~G~~~~GKSsli~~l 28 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRF 28 (206)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 471
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=87.13 E-value=0.4 Score=46.16 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 10 ki~v~G~~~~GKSsli~~l 28 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRY 28 (203)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999998
No 472
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.09 E-value=0.36 Score=46.76 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|+.|+|||||++.+
T Consensus 21 ~~i~v~G~~~~GKSsli~~l 40 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRF 40 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 473
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=87.08 E-value=0.3 Score=47.07 Aligned_cols=20 Identities=20% Similarity=0.395 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|+.|+|||||++.+
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l 40 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVV 40 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999987
No 474
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=87.05 E-value=0.33 Score=48.74 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.5
Q ss_pred cCceEEEEEcCCCCCHHHHHHHH
Q 004463 266 CETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 266 ~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
+| .+++|.||.||||||+++.+
T Consensus 4 ~g-~~i~~eG~~g~GKst~~~~l 25 (216)
T 3tmk_A 4 RG-KLILIEGLDRTGKTTQCNIL 25 (216)
T ss_dssp CC-CEEEEEECSSSSHHHHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHH
Confidence 56 79999999999999999998
No 475
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=87.03 E-value=0.3 Score=46.52 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 24 ki~vvG~~~~GKSsli~~l 42 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRY 42 (189)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999998
No 476
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=86.91 E-value=0.3 Score=47.33 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l 45 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQF 45 (200)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5799999999999999998
No 477
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=86.86 E-value=2.7 Score=47.52 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTLG 289 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~iG 289 (752)
.+++|+|++|+||||++..++
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999883
No 478
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=86.81 E-value=0.39 Score=45.89 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|+.|+|||||++.+
T Consensus 23 ~ki~v~G~~~~GKSsli~~l 42 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVI 42 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999999
No 479
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=86.79 E-value=0.34 Score=48.20 Aligned_cols=19 Identities=37% Similarity=0.641 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
+++|+||.||||+|..+.|
T Consensus 2 ~Iil~GpPGsGKgTqa~~L 20 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRL 20 (206)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999988
No 480
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=86.70 E-value=0.32 Score=46.68 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 28 ki~vvG~~~~GKSsLi~~l 46 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERF 46 (192)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999999
No 481
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=86.65 E-value=0.33 Score=46.46 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 23 ki~v~G~~~~GKSsli~~l 41 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQF 41 (191)
T ss_dssp EEEEESSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4799999999999999998
No 482
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=86.63 E-value=0.33 Score=45.52 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 10 ki~v~G~~~~GKssl~~~~ 28 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISY 28 (182)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999998
No 483
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.61 E-value=0.5 Score=47.05 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=19.6
Q ss_pred cCceEEEEEcCCCCCHHHHHHHH
Q 004463 266 CETRVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 266 ~g~~~~~I~GpNGsGKSTlLK~i 288 (752)
.| ..++|+||.|+|||||...+
T Consensus 33 ~g-~~ilI~GpsGsGKStLA~~L 54 (205)
T 2qmh_A 33 YG-LGVLITGDSGVGKSETALEL 54 (205)
T ss_dssp TT-EEEEEECCCTTTTHHHHHHH
T ss_pred CC-EEEEEECCCCCCHHHHHHHH
Confidence 35 78999999999999998877
No 484
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=86.60 E-value=0.38 Score=46.52 Aligned_cols=20 Identities=40% Similarity=0.429 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|+.|+|||||++.+
T Consensus 25 ~ki~vvG~~~~GKSsli~~l 44 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQF 44 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHH
Confidence 45899999999999999999
No 485
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.57 E-value=0.32 Score=46.24 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|+.|+|||||++.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l 36 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQF 36 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 486
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=86.49 E-value=0.36 Score=49.04 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|+.|+|||||++.+
T Consensus 22 l~I~lvG~~g~GKSSlin~l 41 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSI 41 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 45899999999999999999
No 487
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=86.43 E-value=0.34 Score=46.00 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 17 ~i~v~G~~~~GKssli~~l 35 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRF 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 488
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=86.38 E-value=3.7 Score=42.05 Aligned_cols=20 Identities=15% Similarity=0.493 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|+.++|||||++.+
T Consensus 27 ~~i~vvG~~~~GKSSLln~l 46 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENF 46 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHH
Confidence 46899999999999999999
No 489
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=86.33 E-value=0.36 Score=50.78 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..++|+|++|+|||||++.+
T Consensus 8 g~V~ivG~~nvGKSTLln~l 27 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNL 27 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 36999999999999999999
No 490
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=86.30 E-value=0.29 Score=46.68 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|+.|+|||||++.+
T Consensus 22 ~ki~v~G~~~~GKSsli~~l 41 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKL 41 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 45899999999999999999
No 491
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=86.23 E-value=0.36 Score=46.11 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..++|+|+.|+|||||++.+
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l 37 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQV 37 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 56899999999999999999
No 492
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.20 E-value=0.36 Score=46.36 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|+.|+|||||++.+
T Consensus 29 ~ki~v~G~~~vGKSsli~~l 48 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRF 48 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999998
No 493
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=86.17 E-value=0.41 Score=46.88 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 30 ki~vvG~~~vGKSsLi~~l 48 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVF 48 (205)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 494
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=86.16 E-value=0.99 Score=44.30 Aligned_cols=19 Identities=21% Similarity=0.499 Sum_probs=17.3
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
+++|=|+-||||||.++.+
T Consensus 2 fI~~EG~DGsGKsTq~~~L 20 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLL 20 (197)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5678899999999999988
No 495
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=86.04 E-value=0.38 Score=47.37 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
..++|+|+.|+|||||++.+
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l 58 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKL 58 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 57899999999999999988
No 496
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=86.00 E-value=0.37 Score=46.54 Aligned_cols=19 Identities=26% Similarity=0.365 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~ 26 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIF 26 (192)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999988
No 497
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=85.99 E-value=1.9 Score=33.77 Aligned_cols=46 Identities=26% Similarity=0.221 Sum_probs=31.5
Q ss_pred CCCCCCEEEEcccC--CeeEEEEEeeCCCceEEEEEC----ceEEEEecCCc
Q 004463 586 TPQFGEQVHVKSLG--DKLATVVEVPGDDDTVLVQYG----KMRVRVKKNNI 631 (752)
Q Consensus 586 ~~~vGd~V~v~~~~--~~~g~V~~i~~~~~~~~V~~g----~~k~~v~~~~l 631 (752)
.+++||.|+|.+-- +..|+|.+++.+++++.|.+. ...+.++.+++
T Consensus 4 ~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~v~~~Gr~t~v~l~~~~v 55 (58)
T 1nz9_A 4 AFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQV 55 (58)
T ss_dssp SCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEESSSSEEEEEECGGGE
T ss_pred ccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEeCCCEEEEEECHHHE
Confidence 46899999997641 347999999887777877664 23444444444
No 498
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=85.99 E-value=0.36 Score=46.49 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|+.|+|||||++.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l 49 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKL 49 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 45899999999999999998
No 499
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=85.96 E-value=0.38 Score=49.27 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 004463 270 VVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 270 ~~~I~GpNGsGKSTlLK~i 288 (752)
.++|+|+.|+|||||++.+
T Consensus 3 kI~lvG~~n~GKSTL~n~L 21 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNAL 21 (256)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 500
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=85.94 E-value=0.37 Score=46.46 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 004463 269 RVVVITGPNTGGKTASMKTL 288 (752)
Q Consensus 269 ~~~~I~GpNGsGKSTlLK~i 288 (752)
-.++|+|+.|+|||||++.+
T Consensus 29 ~ki~v~G~~~~GKSsli~~l 48 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRL 48 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHH
Confidence 46899999999999999998
Done!