BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004467
(752 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/617 (59%), Positives = 472/617 (76%), Gaps = 5/617 (0%)
Query: 138 YASKFGVDESKMMERLWGENFFDPATKKWTTKNTGS--ATCKRGFVQFCYEPIKQIINTC 195
YA KFGVD++KMM+RLWG++FF+P TKKWT K+T + +R F F +PI ++
Sbjct: 229 YAKKFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAI 288
Query: 196 MNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTA 255
MN +KD++ +L+KL + +K +EKDL GKAL+K VM+ +LPA+ ALLEM++ HLPSP TA
Sbjct: 289 MNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTA 348
Query: 256 QKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTG 315
Q YR E LYEGP DD AI+NCDP LMLYVSKM+P SDKGRF+AFGRVF+G V +G
Sbjct: 349 QAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSG 408
Query: 316 LKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNAT 375
KVRI GPNYVPG+K DL++K++QR V+ MG+ E ++D P GN + +VG+DQF+ K T
Sbjct: 409 QKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGT 468
Query: 376 LTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESG 435
LT + AH ++ MKFSVSPVV+VAV+ K A+DLPKLVEGLKRL+KSDP V+ + ESG
Sbjct: 469 LTTSET--AHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESG 526
Query: 436 EHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNR 495
EHIVAG GELHLEICL+DL+ D G + S PVV++RETV +S +T +SKSPNKHNR
Sbjct: 527 EHIVAGTGELHLEICLQDLEHDH-AGVPLKISPPVVAYRETVESESSQTALSKSPNKHNR 585
Query: 496 LYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNM 555
+Y++A P++E ++ AI++G I PRDD KAR++I+++++GWD A+KIWCFGP+ GPN+
Sbjct: 586 IYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNL 645
Query: 556 VVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQV 615
V+D K VQYL+EIKDSVVA FQWA+KEG + E MR + + DV LHADAIHRGGGQ+
Sbjct: 646 VIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQI 705
Query: 616 IPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPL 675
IPT RR YA L A P++ EPV++VEIQ PEQA+GGIYSVLN+KRG V E QRPGTPL
Sbjct: 706 IPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPL 765
Query: 676 YNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKR 735
+ +KAYLPV ESFGF+G LR AT GQAFPQ VFDHW + SDPL+P ++A ++V RKR
Sbjct: 766 FTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDPLDPTSKAGEIVLAARKR 825
Query: 736 KGLKEQMTPLSEFEDKL 752
G+KE++ E+ DKL
Sbjct: 826 HGMKEEVPGWQEYYDKL 842
Score = 198 bits (503), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 98/137 (71%), Positives = 112/137 (81%)
Query: 1 MVKFTAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTR 60
MV FT + +R +MD N+RNMSVIAHVDHGKSTLTDSLV AGII+ AG+ R TDTR
Sbjct: 1 MVAFTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTR 60
Query: 61 ADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALR 120
DE ERGITIKST ISLY EM+D+ +K K + +GN +LINLIDSPGHVDFSSEVTAALR
Sbjct: 61 KDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALR 120
Query: 121 ITDGALVVVDCIEGVCM 137
+TDGALVVVD IEGVC+
Sbjct: 121 VTDGALVVVDTIEGVCV 137
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/617 (59%), Positives = 471/617 (76%), Gaps = 5/617 (0%)
Query: 138 YASKFGVDESKMMERLWGENFFDPATKKWTTKNTGS--ATCKRGFVQFCYEPIKQIINTC 195
YA KFGVD++KMM+RLWG++FF+P TKKWT K+T + +R F F +PI ++
Sbjct: 229 YAKKFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAI 288
Query: 196 MNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTA 255
MN +KD++ +L+KL + +K +EKDL GKAL+K VM+ +LPA+ ALLEM++ HLPSP TA
Sbjct: 289 MNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTA 348
Query: 256 QKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTG 315
Q YR E LYEGP DD AI+NCDP LMLYVSKM+P SDKGRF+AFGRVF+G V +G
Sbjct: 349 QAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSG 408
Query: 316 LKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNAT 375
KVRI GPNYVPG+K DL++K++QR V+ MG+ E ++D P GN + +VG+DQF+ K T
Sbjct: 409 QKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGT 468
Query: 376 LTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESG 435
LT + AH ++ MKFSVSPVV+VAV+ K A+DLPKLVEGLKRL+KSDP V+ + ESG
Sbjct: 469 LTTSET--AHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESG 526
Query: 436 EHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNR 495
EHIVAG GELHLEICL+DL+ D G + S PVV++RETV +S +T +SKSPNKHNR
Sbjct: 527 EHIVAGTGELHLEICLQDLEHDH-AGVPLKISPPVVAYRETVESESSQTALSKSPNKHNR 585
Query: 496 LYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNM 555
+Y++A P++E ++ AI++G I PRDD KAR++I+++++GWD A+KIWCFGP+ GPN+
Sbjct: 586 IYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNL 645
Query: 556 VVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQV 615
V+D K VQYL+EIKDSVVA FQWA+KEG + E MR + + DV LHADAI RGGGQ+
Sbjct: 646 VIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIXRGGGQI 705
Query: 616 IPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPL 675
IPT RR YA L A P++ EPV++VEIQ PEQA+GGIYSVLN+KRG V E QRPGTPL
Sbjct: 706 IPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPL 765
Query: 676 YNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKR 735
+ +KAYLPV ESFGF+G LR AT GQAFPQ VFDHW + SDPL+P ++A ++V RKR
Sbjct: 766 FTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDPLDPTSKAGEIVLAARKR 825
Query: 736 KGLKEQMTPLSEFEDKL 752
G+KE++ E+ DKL
Sbjct: 826 HGMKEEVPGWQEYYDKL 842
Score = 198 bits (503), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 98/137 (71%), Positives = 112/137 (81%)
Query: 1 MVKFTAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTR 60
MV FT + +R +MD N+RNMSVIAHVDHGKSTLTDSLV AGII+ AG+ R TDTR
Sbjct: 1 MVAFTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTR 60
Query: 61 ADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALR 120
DE ERGITIKST ISLY EM+D+ +K K + +GN +LINLIDSPGHVDFSSEVTAALR
Sbjct: 61 KDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALR 120
Query: 121 ITDGALVVVDCIEGVCM 137
+TDGALVVVD IEGVC+
Sbjct: 121 VTDGALVVVDTIEGVCV 137
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 149 bits (377), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 196/770 (25%), Positives = 313/770 (40%), Gaps = 159/770 (20%)
Query: 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGISL 77
RN+ + AH+D GK+T T+ ++ G+ + EV D E ERGITI S +
Sbjct: 10 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTA 69
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-- 135
++ K Y+ R IN+ID+PGHVDF+ EV ++R+ DGA++V + GV
Sbjct: 70 FW---SGMAKQYEPHR------INIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQP 120
Query: 136 -----CMYASKFGVDESKMMERL--WGENFFDPATKKWTTKNTGSATCKRGF-------- 180
A+K+ V + ++ G NF + T +
Sbjct: 121 QSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPLQLAIGAEEHFTG 180
Query: 181 ------------------VQFCYEPIKQIINTCMNDQKDKLWP--------MLQKLGVTM 214
V F YE I + N+ L +++K
Sbjct: 181 VVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGE 240
Query: 215 KSEEKDLMGKALMKRVMQTWL-----------PASSALLEMMIFHLPSPSTAQKYRVENL 263
+ E ++ G AL +RV+ + A+L+ +I +LPSP
Sbjct: 241 ELTEAEIKG-ALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAIN---- 295
Query: 264 YEGPLDD-QYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMG 322
G LDD + A R+ + P K+ G F RV+SG V++G V
Sbjct: 296 --GILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNL-TFFRVYSGVVNSGDTVL--- 349
Query: 323 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEV 382
N V ++ R V K+E +++V G+ A +GL +T TL +
Sbjct: 350 -NSVKAARERF-----GRIVQMHANKREEIKEVRAGDIAAAIGLKD-VTTGDTLCDP--- 399
Query: 383 DAHPI--RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIV 439
DA PI M+F PV+ +AV+ K +D K+ L RLAK DP V T EES + I+
Sbjct: 400 DA-PIILERMEFP-EPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTII 457
Query: 440 AGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSC-----RTVMSKSPNKHN 494
AG GELHL+I + ++ +F A + K P V++RET+ +K S ++
Sbjct: 458 AGMGELHLDIIVDRMKREFNVEANVGK--PQVAYRETIRQKVTDVEGKHAKQSGGRGQYG 515
Query: 495 RLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPN 554
+ ++ PLE P +P
Sbjct: 516 HVVIDMYPLE-------------PGSNP-------------------------------- 530
Query: 555 MVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRG--ICFEVCD--VVLHADAIH- 609
KG +++N+IK V+ G + + + E+ G + V D + LH + H
Sbjct: 531 ------KGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHD 584
Query: 610 -RGGGQVIPTARRVIYASQL-TAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEE 667
A + + AKP LLEP+ VE++ PE+ G + L+++RG + +
Sbjct: 585 VDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGML--K 642
Query: 668 MQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD 717
Q I A +P+ E FG++ LR+ T G+A F +D S+
Sbjct: 643 GQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRASYTMEFLKYDEAPSN 692
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 149 bits (376), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 196/770 (25%), Positives = 313/770 (40%), Gaps = 159/770 (20%)
Query: 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGISL 77
RN+ + AH+D GK+T T+ ++ G+ + EV D E ERGITI S +
Sbjct: 11 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTA 70
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-- 135
++ K Y+ R IN+ID+PGHVDF+ EV ++R+ DGA++V + GV
Sbjct: 71 FW---SGMAKQYEPHR------INIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQP 121
Query: 136 -----CMYASKFGVDESKMMERL--WGENFFDPATKKWTTKNTGSATCKRGF-------- 180
A+K+ V + ++ G NF + T +
Sbjct: 122 QSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPLQLAIGAEEHFTG 181
Query: 181 ------------------VQFCYEPIKQIINTCMNDQKDKLWP--------MLQKLGVTM 214
V F YE I + N+ L +++K
Sbjct: 182 VVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGE 241
Query: 215 KSEEKDLMGKALMKRVMQTWL-----------PASSALLEMMIFHLPSPSTAQKYRVENL 263
+ E ++ G AL +RV+ + A+L+ +I +LPSP
Sbjct: 242 ELTEAEIKG-ALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAIN---- 296
Query: 264 YEGPLDD-QYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMG 322
G LDD + A R+ + P K+ G F RV+SG V++G V
Sbjct: 297 --GILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNL-TFFRVYSGVVNSGDTVL--- 350
Query: 323 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEV 382
N V ++ R V K+E +++V G+ A +GL +T TL +
Sbjct: 351 -NSVKAARERF-----GRIVQMHANKREEIKEVRAGDIAAAIGLKD-VTTGDTLCDP--- 400
Query: 383 DAHPI--RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIV 439
DA PI M+F PV+ +AV+ K +D K+ L RLAK DP V T EES + I+
Sbjct: 401 DA-PIILERMEFP-EPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTII 458
Query: 440 AGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSC-----RTVMSKSPNKHN 494
AG GELHL+I + ++ +F A + K P V++RET+ +K S ++
Sbjct: 459 AGMGELHLDIIVDRMKREFNVEANVGK--PQVAYRETIRQKVTDVEGKHAKQSGGRGQYG 516
Query: 495 RLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPN 554
+ ++ PLE P +P
Sbjct: 517 HVVIDMYPLE-------------PGSNP-------------------------------- 531
Query: 555 MVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRG--ICFEVCD--VVLHADAIH- 609
KG +++N+IK V+ G + + + E+ G + V D + LH + H
Sbjct: 532 ------KGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHD 585
Query: 610 -RGGGQVIPTARRVIYASQL-TAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEE 667
A + + AKP LLEP+ VE++ PE+ G + L+++RG + +
Sbjct: 586 VDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGML--K 643
Query: 668 MQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD 717
Q I A +P+ E FG++ LR+ T G+A F +D S+
Sbjct: 644 GQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRASYTMEFLKYDEAPSN 693
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 125 bits (314), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 126/444 (28%), Positives = 198/444 (44%), Gaps = 79/444 (17%)
Query: 278 NCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKS 337
+ DPNGPL K++ GR F RV+SG +++G V N G K+
Sbjct: 302 HPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----R 351
Query: 338 VQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSV-SP 396
V R + +E VE++ G+ A+VGL + IT + TL E DA + V P
Sbjct: 352 VARLLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEP 407
Query: 397 VVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQ 455
V+ VA++ K +D KL + L RLA+ DP V T E+G+ I++G GELHLEI + L+
Sbjct: 408 VIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLK 467
Query: 456 DDFMGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--L 507
+F A + K P V++RET+ + K R + H ++ +E P G
Sbjct: 468 REFKVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEF 525
Query: 508 AEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLN 567
AI G I P++ A K + E GP P VVD+
Sbjct: 526 VNAIVGGVI-PKEYIPAVQKGIEEAM-----------QSGPLIGFP--VVDI-------- 563
Query: 568 EIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 627
+ +G+ AE + + F++ + +A+ +G
Sbjct: 564 ----------KVTLYDGSYAEVDSSEMAFKIAGSMAIKEAVQKG---------------- 597
Query: 628 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES 687
P +LEP+ VE+ PE+ +G + LN +RG + R + I+A++P+ E
Sbjct: 598 ---DPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEM 652
Query: 688 FGFSGTLRAATSGQAFPQCVFDHW 711
FG++ LR+ T G+ FDH+
Sbjct: 653 FGYATDLRSKTQGRGSFVMFFDHY 676
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 18/120 (15%)
Query: 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGI 75
+RN+ + AH+D GK+T T+ ++ G I + EV D E ERGITI +
Sbjct: 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVT 70
Query: 76 SLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
+ +++ ++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV
Sbjct: 71 TCFWK----------------DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGV 114
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 125 bits (314), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 126/444 (28%), Positives = 198/444 (44%), Gaps = 79/444 (17%)
Query: 278 NCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKS 337
+ DPNGPL K++ GR F RV+SG +++G V N G K+
Sbjct: 302 HPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----R 351
Query: 338 VQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSV-SP 396
V R + +E VE++ G+ A+VGL + IT + TL E DA + V P
Sbjct: 352 VARLLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEP 407
Query: 397 VVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQ 455
V+ VA++ K +D KL + L RLA+ DP V T E+G+ I++G GELHLEI + L+
Sbjct: 408 VIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLK 467
Query: 456 DDFMGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--L 507
+F A + K P V++RET+ + K R + H ++ +E P G
Sbjct: 468 REFKVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEF 525
Query: 508 AEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLN 567
AI G I P++ A K + E GP P VVD+
Sbjct: 526 VNAIVGGVI-PKEYIPAVQKGIEEAM-----------QSGPLIGFP--VVDI-------- 563
Query: 568 EIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 627
+ +G+ AE + + F++ + +A+ +G
Sbjct: 564 ----------KVTLYDGSYAEVDSSEMAFKIAGSMAIKEAVQKG---------------- 597
Query: 628 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES 687
P +LEP+ VE+ PE+ +G + LN +RG + R + I+A++P+ E
Sbjct: 598 ---DPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEM 652
Query: 688 FGFSGTLRAATSGQAFPQCVFDHW 711
FG++ LR+ T G+ FDH+
Sbjct: 653 FGYATDLRSKTQGRGSFVMFFDHY 676
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 18/120 (15%)
Query: 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGI 75
+RN+ + AH+D GK+T T+ ++ G I + EV D E ERGITI +
Sbjct: 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVT 70
Query: 76 SLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
+ +++ ++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV
Sbjct: 71 TCFWK----------------DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGV 114
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 125 bits (314), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 126/444 (28%), Positives = 198/444 (44%), Gaps = 79/444 (17%)
Query: 278 NCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKS 337
+ DPNGPL K++ GR F RV+SG +++G V N G K+
Sbjct: 269 HPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----R 318
Query: 338 VQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSV-SP 396
V R + +E VE++ G+ A+VGL + IT + TL E DA + V P
Sbjct: 319 VARLLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEP 374
Query: 397 VVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQ 455
V+ VA++ K +D KL + L RLA+ DP V T E+G+ I++G GELHLEI + L+
Sbjct: 375 VIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLK 434
Query: 456 DDFMGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--L 507
+F A + K P V++RET+ + K R + H ++ +E P G
Sbjct: 435 REFKVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEF 492
Query: 508 AEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLN 567
AI G I P++ A K + E GP P VVD+
Sbjct: 493 VNAIVGGVI-PKEYIPAVQKGIEEAM-----------QSGPLIGFP--VVDI-------- 530
Query: 568 EIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 627
+ +G+ AE + + F++ + +A+ +G
Sbjct: 531 ----------KVTLYDGSYAEVDSSEMAFKIAGSMAIKEAVQKG---------------- 564
Query: 628 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES 687
P +LEP+ VE+ PE+ +G + LN +RG + R + I+A++P+ E
Sbjct: 565 ---DPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEM 619
Query: 688 FGFSGTLRAATSGQAFPQCVFDHW 711
FG++ LR+ T G+ FDH+
Sbjct: 620 FGYATDLRSKTQGRGSFVMFFDHY 643
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 42/118 (35%)
Query: 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISL 77
+RN+ + AH+D GK+T T+ ++ G IA
Sbjct: 6 RLRNIGIAAHIDAGKTTTTERILYYTGRIA------------------------------ 35
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
+T K ++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV
Sbjct: 36 ---VTTCFWKDHR---------INIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGV 81
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 125/444 (28%), Positives = 197/444 (44%), Gaps = 79/444 (17%)
Query: 278 NCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKS 337
+ DPNGPL K++ GR F RV+SG +++G V N G K+
Sbjct: 302 HPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----R 351
Query: 338 VQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSV-SP 396
V R + +E VE++ G+ A+VGL + IT + TL E DA + V P
Sbjct: 352 VARLLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEP 407
Query: 397 VVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQ 455
V+ VA++ K +D KL + L RLA+ DP V T E+G+ I++G GELHLEI + L+
Sbjct: 408 VIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLK 467
Query: 456 DDFMGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--L 507
+F A + K P V++RET+ + K R + H ++ +E P G
Sbjct: 468 REFKVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEF 525
Query: 508 AEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLN 567
AI G I P++ A K + E GP P VVD+
Sbjct: 526 VNAIVGGVI-PKEYIPAVQKGIEEAM-----------QSGPLIGFP--VVDI-------- 563
Query: 568 EIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 627
+ +G+ E + + F++ + +A+ +G
Sbjct: 564 ----------KVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKG---------------- 597
Query: 628 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES 687
P +LEP+ VE+ PE+ +G + LN +RG + R + I+A++P+ E
Sbjct: 598 ---DPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEM 652
Query: 688 FGFSGTLRAATSGQAFPQCVFDHW 711
FG++ LR+ T G+ FDH+
Sbjct: 653 FGYATDLRSKTQGRGSFVMFFDHY 676
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 18/120 (15%)
Query: 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGI 75
+RN+ + AH+D GK+T T+ ++ G I + EV D E ERGITI +
Sbjct: 11 RLRNIVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVT 70
Query: 76 SLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
+ +++ ++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV
Sbjct: 71 TCFWK----------------DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGV 114
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 123 bits (309), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 125/444 (28%), Positives = 197/444 (44%), Gaps = 79/444 (17%)
Query: 278 NCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKS 337
+ DPNGPL K++ GR F RV+SG +++G V N G K+
Sbjct: 302 HPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----R 351
Query: 338 VQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSV-SP 396
V R + +E VE++ G+ A+VGL + IT + TL E DA + V P
Sbjct: 352 VARLLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEP 407
Query: 397 VVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQ 455
V+ VA++ K +D KL + L RLA+ DP V T E+G+ I++G GELHLEI + L+
Sbjct: 408 VIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLK 467
Query: 456 DDFMGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--L 507
+F A + K P V++RET+ + K R + H ++ +E P G
Sbjct: 468 REFKVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEF 525
Query: 508 AEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLN 567
AI G I P++ A K + E GP P VVD+
Sbjct: 526 VNAIVGGVI-PKEYIPAVQKGIEEAM-----------QSGPLIGFP--VVDI-------- 563
Query: 568 EIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 627
+ +G+ E + + F++ + +A+ +G
Sbjct: 564 ----------KVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKG---------------- 597
Query: 628 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES 687
P +LEP+ VE+ PE+ +G + LN +RG + R + I+A++P+ E
Sbjct: 598 ---DPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEM 652
Query: 688 FGFSGTLRAATSGQAFPQCVFDHW 711
FG++ LR+ T G+ FDH+
Sbjct: 653 FGYATDLRSKTQGRGSFVMFFDHY 676
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 18/120 (15%)
Query: 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGI 75
+RN+ + AH+D GK+T T+ ++ G I + EV D E ERGITI +
Sbjct: 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIAEVHEGAATMDFMEQERERGITITAAVT 70
Query: 76 SLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
+ +++ ++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV
Sbjct: 71 TCFWK----------------DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGV 114
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 123 bits (309), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 125/444 (28%), Positives = 197/444 (44%), Gaps = 79/444 (17%)
Query: 278 NCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKS 337
+ DPNGPL K++ GR F RV+SG +++G V N G K+
Sbjct: 302 HPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----R 351
Query: 338 VQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSV-SP 396
V R + +E VE++ G+ A+VGL + IT + TL E DA + V P
Sbjct: 352 VARLLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEP 407
Query: 397 VVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQ 455
V+ VA++ K +D KL + L RLA+ DP V T E+G+ I++G GELHLEI + L+
Sbjct: 408 VIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLK 467
Query: 456 DDFMGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--L 507
+F A + K P V++RET+ + K R + H ++ +E P G
Sbjct: 468 REFKVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEF 525
Query: 508 AEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLN 567
AI G I P++ A K + E GP P VVD+
Sbjct: 526 VNAIVGGVI-PKEYIPAVQKGIEEAM-----------QSGPLIGFP--VVDI-------- 563
Query: 568 EIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 627
+ +G+ E + + F++ + +A+ +G
Sbjct: 564 ----------KVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKG---------------- 597
Query: 628 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES 687
P +LEP+ VE+ PE+ +G + LN +RG + R + I+A++P+ E
Sbjct: 598 ---DPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEM 652
Query: 688 FGFSGTLRAATSGQAFPQCVFDHW 711
FG++ LR+ T G+ FDH+
Sbjct: 653 FGYATDLRSKTQGRGSFVMFFDHY 676
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 18/120 (15%)
Query: 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGI 75
+RN+ + AH+D GK+T T+ ++ G I + EV D E ERGITI +
Sbjct: 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVT 70
Query: 76 SLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
+ +++ ++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV
Sbjct: 71 TCFWK----------------DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGV 114
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 123 bits (309), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 125/444 (28%), Positives = 197/444 (44%), Gaps = 79/444 (17%)
Query: 278 NCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKS 337
+ DPNGPL K++ GR F RV+SG +++G V N G K+
Sbjct: 302 HPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----R 351
Query: 338 VQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSV-SP 396
V R + +E VE++ G+ A+VGL + IT + TL E DA + V P
Sbjct: 352 VARLLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEP 407
Query: 397 VVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQ 455
V+ VA++ K +D KL + L RLA+ DP V T E+G+ I++G GELHLEI + L+
Sbjct: 408 VIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLK 467
Query: 456 DDFMGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--L 507
+F A + K P V++RET+ + K R + H ++ +E P G
Sbjct: 468 REFKVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEF 525
Query: 508 AEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLN 567
AI G I P++ A K + E GP P VVD+
Sbjct: 526 VNAIVGGVI-PKEYIPAVQKGIEEAM-----------QSGPLIGFP--VVDI-------- 563
Query: 568 EIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 627
+ +G+ E + + F++ + +A+ +G
Sbjct: 564 ----------KVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKG---------------- 597
Query: 628 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES 687
P +LEP+ VE+ PE+ +G + LN +RG + R + I+A++P+ E
Sbjct: 598 ---DPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEM 652
Query: 688 FGFSGTLRAATSGQAFPQCVFDHW 711
FG++ LR+ T G+ FDH+
Sbjct: 653 FGYATDLRSKTQGRGSFVMFFDHY 676
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 18/120 (15%)
Query: 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGI 75
+RN+ + AH+D GK+T T+ ++ G I + EV D E ERGITI +
Sbjct: 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVT 70
Query: 76 SLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
+ +++ ++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV
Sbjct: 71 TCFWK----------------DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGV 114
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 125/444 (28%), Positives = 197/444 (44%), Gaps = 79/444 (17%)
Query: 278 NCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKS 337
+ DPNGPL K++ GR F RV+SG +++G V N G K+
Sbjct: 302 HPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----R 351
Query: 338 VQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSV-SP 396
V R + +E VE++ G+ A+VGL + IT + TL E DA + V P
Sbjct: 352 VARLLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEP 407
Query: 397 VVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQ 455
V+ VA++ K +D KL + L RLA+ DP V T E+G+ I++G GELHLEI + L+
Sbjct: 408 VIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLK 467
Query: 456 DDFMGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--L 507
+F A + K P V++RET+ + K R + H ++ +E P G
Sbjct: 468 REFKVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEF 525
Query: 508 AEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLN 567
AI G I P++ A K + E GP P VVD+
Sbjct: 526 VNAIVGGVI-PKEYIPAVQKGIEEAM-----------QSGPLIGFP--VVDI-------- 563
Query: 568 EIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 627
+ +G+ E + + F++ + +A+ +G
Sbjct: 564 ----------KVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKG---------------- 597
Query: 628 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES 687
P +LEP+ VE+ PE+ +G + LN +RG + R + I+A++P+ E
Sbjct: 598 ---DPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEM 652
Query: 688 FGFSGTLRAATSGQAFPQCVFDHW 711
FG++ LR+ T G+ FDH+
Sbjct: 653 FGYATDLRSKTQGRGSFVMFFDHY 676
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 18/120 (15%)
Query: 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGI 75
+RN+ + AH+D GK+T T+ ++ G I + EV D E ERGITI +
Sbjct: 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVT 70
Query: 76 SLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
+ +++ ++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV
Sbjct: 71 TCFWK----------------DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGV 114
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 123/444 (27%), Positives = 194/444 (43%), Gaps = 79/444 (17%)
Query: 278 NCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKS 337
+ DPNGPL K++ GR F RV+SG +++G V N G K+
Sbjct: 302 HPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----R 351
Query: 338 VQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSV-SP 396
V R + +E VE++ G+ A+VGL + IT + TL E DA + V P
Sbjct: 352 VARLLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEP 407
Query: 397 VVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQ 455
V+ VA++ K +D KL + L RLA+ P V T E+G I++G GEL LEI + L+
Sbjct: 408 VIDVAIEPKTKADQEKLSQALARLAEESPTFSVSTHPETGSTIISGMGELSLEIIVDRLK 467
Query: 456 DDFMGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--L 507
+F A + K P V++RET+ + K R + H ++ +E P G
Sbjct: 468 REFKVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEF 525
Query: 508 AEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLN 567
AI G I P++ A K + E GP P VVD+
Sbjct: 526 VNAIVGGVI-PKEYIPAVQKGIEEAM-----------QSGPLIGFP--VVDI-------- 563
Query: 568 EIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 627
+ +G+ E + + F++ + +A+ +G
Sbjct: 564 ----------KVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKG---------------- 597
Query: 628 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES 687
P +LEP+ VE+ PE+ +G + LN +RG + R + I+A++P+ E
Sbjct: 598 ---DPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEM 652
Query: 688 FGFSGTLRAATSGQAFPQCVFDHW 711
FG++ LR+ T G+ FDH+
Sbjct: 653 FGYATDLRSKTQGRGSFVMFFDHY 676
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 18/120 (15%)
Query: 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGI 75
+RN+ + AH+D GK+T T+ ++ G I + EV D E ERGITI +
Sbjct: 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVT 70
Query: 76 SLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
+ +++ ++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV
Sbjct: 71 TCFWK----------------DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGV 114
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 121/493 (24%), Positives = 219/493 (44%), Gaps = 84/493 (17%)
Query: 241 LLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGR 300
+L+ +I +LP+P+ + + DD+ R+ D N P K+ G
Sbjct: 281 VLDAVIDYLPAPT-----EIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIATDPFVGT 335
Query: 301 FFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNT 360
F RV+SG +S+G V N V G+K+ V R V ++E +++V G+
Sbjct: 336 L-TFARVYSGVLSSGDSVL----NSVKGKKE-----RVGRMVQMHANQREEIKEVRAGDI 385
Query: 361 VAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRL 420
A++G+ T + + EK + + M F PV+ VAV+ K +D K+ L +L
Sbjct: 386 AALIGMKDVTTGDTLCSIEKPI---ILERMDFP-EPVISVAVEPKTKADQEKMGIALGKL 441
Query: 421 AKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLE 479
A+ DP V T EESG+ I++G GELHL+I + ++ +F G E P V++RET+ +
Sbjct: 442 AQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREF--GVEANIGKPQVAYRETITK 499
Query: 480 -------KSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEE 532
K R + H + A ++E G I +E
Sbjct: 500 DNVEIEGKFVRQSGGRGQFGHCWIRFSAADVDE-------KGNI-------------TEG 539
Query: 533 FGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGF-----QWASKEGALA 587
++ ++ + P+ P + KG++ ++K+ VVAG+ + +G+
Sbjct: 540 LVFENEVVGGVV---PKEYIPA----IQKGIE--EQMKNGVVAGYPLIGLKATVFDGSYH 590
Query: 588 EENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPE 647
+ + + F++ + +GGG+V LEP+ VE+ PE
Sbjct: 591 DVDSNEMAFKIAASMATKQLAQKGGGKV-------------------LEPIMKVEVVTPE 631
Query: 648 QALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCV 707
+G + LN++RG + + M+ + I+A +P+ E FG++ +R+ + G+A
Sbjct: 632 DYMGDVMGDLNRRRG-LIQGMEDTVSGKV-IRAEVPLGEMFGYATDVRSMSQGRASYSME 689
Query: 708 FDHWDMMSSDPLE 720
F + S+ +E
Sbjct: 690 FSKYAEAPSNIVE 702
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 22/152 (14%)
Query: 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGISL 77
RN+ + AHVD GK+T T+ ++ G+ + EV TD E ERGITI S ++
Sbjct: 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTT 73
Query: 78 YYEMTDDALKSYKGERNG-NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-- 134
++ KG R + Y +N+ID+PGHVDF+ EV +LR+ DGA+VV G
Sbjct: 74 FW----------KGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVE 123
Query: 135 -----VCMYASKFGVDESKMMERL--WGENFF 159
V A+K+GV + ++ G NF
Sbjct: 124 PQSETVWRQANKYGVPRIVYVNKMDRQGANFL 155
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 75/120 (62%), Gaps = 12/120 (10%)
Query: 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGI 75
+ N+RN +IAHVDHGKSTL D L+ G I++ + ++ DT E ERGIT+K +
Sbjct: 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKRE-QLLDTLDVERERGITVKMQAV 61
Query: 76 SLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
++Y+ D GN Y ++LID+PGHVDFS EV+ AL +GAL+++D +G+
Sbjct: 62 RMFYKAKD-----------GNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGI 110
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 82/207 (39%), Gaps = 31/207 (14%)
Query: 280 DPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIM--GPNYVPGE------KK 331
DP PL + +G AF R+F G+V G K+ +M G Y E K
Sbjct: 188 DPQKPLKALIFDSYYDPYRGAV-AFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTPKM 246
Query: 332 DLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMK 391
+ K V ++ + V D+ G+T+ T+ K P+ +
Sbjct: 247 TKFDKLSAGDVGYIAASIKDVRDIRIGDTI---------------THAKNPTKEPVPGFQ 291
Query: 392 FSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGE----HIVAGAGELHL 447
P+V + + +L + L++ A +D +V E S V G LH+
Sbjct: 292 -PAKPMVYAGIYPAEDTTYEELRDALEKYAINDAAIVYEPESSPALGMGFRVGFLGLLHM 350
Query: 448 EICLKDLQDDFMGGAEIIKSDPVVSFR 474
EI + L+ ++ G +II + P V +R
Sbjct: 351 EIVQERLEREY--GVKIITTAPNVIYR 375
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 74/120 (61%), Gaps = 12/120 (10%)
Query: 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGI 75
+ N+RN +IAHVDHGKSTL D L+ G I++ + ++ DT E ERGIT+K +
Sbjct: 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKRE-QLLDTLDVERERGITVKXQAV 61
Query: 76 SLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
+Y+ D GN Y ++LID+PGHVDFS EV+ AL +GAL+++D +G+
Sbjct: 62 RXFYKAKD-----------GNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGI 110
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 80/207 (38%), Gaps = 31/207 (14%)
Query: 280 DPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRI--MGPNYVPGE------KK 331
DP PL + +G AF R+F G+V G K+ + G Y E K
Sbjct: 188 DPQKPLKALIFDSYYDPYRGAV-AFVRIFDGEVKPGDKIXLXSTGKEYEVTEVGAQTPKX 246
Query: 332 DLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMK 391
+ K V ++ + V D+ G+T+ T+ K P+ +
Sbjct: 247 TKFDKLSAGDVGYIAASIKDVRDIRIGDTI---------------THAKNPTKEPVPGFQ 291
Query: 392 FSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEES---GEHIVAG-AGELHL 447
P V + + +L + L++ A +D +V E S G G G LH
Sbjct: 292 -PAKPXVYAGIYPAEDTTYEELRDALEKYAINDAAIVYEPESSPALGXGFRVGFLGLLHX 350
Query: 448 EICLKDLQDDFMGGAEIIKSDPVVSFR 474
EI + L+ ++ G +II + P V +R
Sbjct: 351 EIVQERLEREY--GVKIITTAPNVIYR 375
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 75/118 (63%), Gaps = 12/118 (10%)
Query: 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISL 77
NIRN S+IAH+DHGKSTL+D ++ G ++ + ++ D+ E ERGITIK+ ++L
Sbjct: 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDR-EMEAQVLDSMDLERERGITIKAQSVTL 61
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
Y+ +D G Y +N ID+PGHVDFS EV+ +L +GAL+VVD +GV
Sbjct: 62 DYKASD-----------GETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGV 108
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 75/118 (63%), Gaps = 12/118 (10%)
Query: 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISL 77
NIRN S+IAH+DHGKSTL+D ++ G ++ + ++ D+ E ERGITIK+ ++L
Sbjct: 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDR-EMEAQVLDSMDLERERGITIKAQSVTL 61
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
Y+ +D G Y +N ID+PGHVDFS EV+ +L +GAL+VVD +GV
Sbjct: 62 DYKASD-----------GETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGV 108
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 117/490 (23%), Positives = 201/490 (41%), Gaps = 103/490 (21%)
Query: 241 LLEMMIFHLPSPSTAQK---YRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASD 297
+L+ +I +LPSP + +R N E I D + K++
Sbjct: 270 MLDAVIDYLPSPLDVKPIIGHRASNPEE--------EVIAKADDSAEFAALAFKVMTDPY 321
Query: 298 KGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPC 357
G+ F RV+SG +++G V+ N G+++ V R + ++ ++ V
Sbjct: 322 VGKL-TFFRVYSGTMTSGSYVK----NSTKGKRE-----RVGRLLQMHANSRQEIDTVYS 371
Query: 358 GNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGL 417
G+ A VGL T + TL EK + + +M+F PV+ ++V+ K +D K+ + L
Sbjct: 372 GDIAAAVGLKDTGTGD-TLCGEK--NDIILESMEFP-EPVIHLSVEPKSKADQDKMTQAL 427
Query: 418 KRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 476
+L + DP T EE+G+ I+ G GELHL+I + ++ +F E P+VS+RET
Sbjct: 428 VKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEF--NVECNVGAPMVSYRET 485
Query: 477 VLEKSCRTVMSK------SPNKHNRLYMEARPLEEGLAEAIDDGRIG---PRDDPKARSK 527
KS V K ++ +++E P E G ++ +G PR
Sbjct: 486 F--KSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPR-------- 535
Query: 528 ILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALA 587
E SV AG + A + G LA
Sbjct: 536 ----------------------------------------EYIPSVEAGLKDAMENGVLA 555
Query: 588 EENMRGICFEVCDVVLH-ADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYM-----V 641
+ + ++ D H D+ A ++ + L + +PV + V
Sbjct: 556 GYPLIDVKAKLYDGSYHDVDSSE--------MAFKIAASLALKEAAKKCDPVILEPMMKV 607
Query: 642 EIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQ 701
I+ PE+ +G I + +RG V + P + AY+P+ E FG++ +LR+ T G+
Sbjct: 608 TIEMPEEYMGDIMGDVTSRRGRV--DGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGR 665
Query: 702 AFPQCVFDHW 711
FDH+
Sbjct: 666 GTYTMYFDHY 675
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 18/118 (15%)
Query: 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGISL 77
RN+ ++AH+D GK+T T+ ++ G I + E D E +RGITI S +
Sbjct: 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
+E G R +N+ID+PGHVD + EV +LR+ DGA+ V+D GV
Sbjct: 71 AWE----------GHR------VNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGV 112
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 117/490 (23%), Positives = 201/490 (41%), Gaps = 103/490 (21%)
Query: 241 LLEMMIFHLPSPSTAQK---YRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASD 297
+L+ +I +LPSP + +R N E I D + K++
Sbjct: 270 MLDAVIDYLPSPLDVKPIIGHRASNPEE--------EVIAKADDSAEFAALAFKVMTDPY 321
Query: 298 KGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPC 357
G+ F RV+SG +++G V+ N G+++ V R + ++ ++ V
Sbjct: 322 VGKL-TFFRVYSGTMTSGSYVK----NSTKGKRE-----RVGRLLQMHANSRQEIDTVYS 371
Query: 358 GNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGL 417
G+ A VGL T + TL EK + + +M+F PV+ ++V+ K +D K+ + L
Sbjct: 372 GDIAAAVGLKDTGTGD-TLCGEK--NDIILESMEFP-EPVIHLSVEPKSKADQDKMTQAL 427
Query: 418 KRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 476
+L + DP T EE+G+ I+ G GELHL+I + ++ +F E P+VS+RET
Sbjct: 428 VKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEF--NVECNVGAPMVSYRET 485
Query: 477 VLEKSCRTVMSK------SPNKHNRLYMEARPLEEGLAEAIDDGRIG---PRDDPKARSK 527
KS V K ++ +++E P E G ++ +G PR
Sbjct: 486 F--KSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPR-------- 535
Query: 528 ILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALA 587
E SV AG + A + G LA
Sbjct: 536 ----------------------------------------EYIPSVEAGLKDAMENGVLA 555
Query: 588 EENMRGICFEVCDVVLH-ADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYM-----V 641
+ + ++ D H D+ A ++ + L + +PV + V
Sbjct: 556 GYPLIDVKAKLYDGSYHDVDSSE--------MAFKIAASLALKEAAKKCDPVILEPMMKV 607
Query: 642 EIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQ 701
I+ PE+ +G I + +RG V + P + AY+P+ E FG++ +LR+ T G+
Sbjct: 608 TIEMPEEYMGDIMGDVTSRRGRV--DGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGR 665
Query: 702 AFPQCVFDHW 711
FDH+
Sbjct: 666 GTYTMYFDHY 675
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 63/118 (53%), Gaps = 18/118 (15%)
Query: 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGISL 77
RN+ +IAH+D GK+T T+ ++ G I + E D E +RGITI S +
Sbjct: 11 RNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
+E G R +N+ID+PGHVDF+ EV +LR+ DGA+ V+D GV
Sbjct: 71 AWE----------GHR------VNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGV 112
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 117/490 (23%), Positives = 201/490 (41%), Gaps = 103/490 (21%)
Query: 241 LLEMMIFHLPSPSTAQK---YRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASD 297
+L+ +I +LPSP + +R N E I D + K++
Sbjct: 270 MLDAVIDYLPSPLDVKPIIGHRASNPEE--------EVIAKADDSAEFAALAFKVMTDPY 321
Query: 298 KGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPC 357
G+ F RV+SG +++G V+ N G+++ V R + ++ ++ V
Sbjct: 322 VGKL-TFFRVYSGTMTSGSYVK----NSTKGKRE-----RVGRLLQMHANSRQEIDTVYS 371
Query: 358 GNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGL 417
G+ A VGL T + TL EK + + +M+F PV+ ++V+ K +D K+ + L
Sbjct: 372 GDIAAAVGLKDTGTGD-TLCGEK--NDIILESMEFP-EPVIHLSVEPKSKADQDKMTQAL 427
Query: 418 KRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 476
+L + DP T EE+G+ I+ G GELHL+I + ++ +F E P+VS+RET
Sbjct: 428 VKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEF--NVECNVGAPMVSYRET 485
Query: 477 VLEKSCRTVMSK------SPNKHNRLYMEARPLEEGLAEAIDDGRIG---PRDDPKARSK 527
KS V K ++ +++E P E G ++ +G PR
Sbjct: 486 F--KSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPR-------- 535
Query: 528 ILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALA 587
E SV AG + A + G LA
Sbjct: 536 ----------------------------------------EYIPSVEAGLKDAMENGVLA 555
Query: 588 EENMRGICFEVCDVVLH-ADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYM-----V 641
+ + ++ D H D+ A ++ + L + +PV + V
Sbjct: 556 GYPLIDVKAKLYDGSYHDVDSSE--------MAFKIAASLALKEAAKKCDPVILEPMMKV 607
Query: 642 EIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQ 701
I+ PE+ +G I + +RG V + P + AY+P+ E FG++ +LR+ T G+
Sbjct: 608 TIEMPEEYMGDIMGDVTSRRGRV--DGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGR 665
Query: 702 AFPQCVFDHW 711
FDH+
Sbjct: 666 GTYTMYFDHY 675
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 18/118 (15%)
Query: 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGISL 77
RN+ +IAH+D GK+T T+ ++ G I + E D E +RGITI S +
Sbjct: 11 RNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
+E G R +N+ID+PGHVD + EV +LR+ DGA+ V+D GV
Sbjct: 71 AWE----------GHR------VNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGV 112
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 117/490 (23%), Positives = 201/490 (41%), Gaps = 103/490 (21%)
Query: 241 LLEMMIFHLPSPSTAQK---YRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASD 297
+L+ +I +LPSP + +R N E I D + K++
Sbjct: 270 MLDAVIDYLPSPLDVKPIIGHRASNPEE--------EVIAKADDSAEFAALAFKVMTDPY 321
Query: 298 KGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPC 357
G+ F RV+SG +++G V+ N G+++ V R + ++ ++ V
Sbjct: 322 VGKL-TFFRVYSGTMTSGSYVK----NSTKGKRE-----RVGRLLQMHANSRQEIDTVYS 371
Query: 358 GNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGL 417
G+ A VGL T + TL EK + + +M+F PV+ ++V+ K +D K+ + L
Sbjct: 372 GDIAAAVGLKDTGTGD-TLCGEK--NDIILESMEFP-EPVIHLSVEPKSKADQDKMTQAL 427
Query: 418 KRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 476
+L + DP T EE+G+ I+ G GELHL+I + ++ +F E P+VS+RET
Sbjct: 428 VKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEF--NVECNVGAPMVSYRET 485
Query: 477 VLEKSCRTVMSK------SPNKHNRLYMEARPLEEGLAEAIDDGRIG---PRDDPKARSK 527
KS V K ++ +++E P E G ++ +G PR
Sbjct: 486 F--KSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPR-------- 535
Query: 528 ILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALA 587
E SV AG + A + G LA
Sbjct: 536 ----------------------------------------EYIPSVEAGLKDAMENGVLA 555
Query: 588 EENMRGICFEVCDVVLH-ADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYM-----V 641
+ + ++ D H D+ A ++ + L + +PV + V
Sbjct: 556 GYPLIDVKAKLYDGSYHDVDSSE--------MAFKIAASLALKEAAKKCDPVILEPMMKV 607
Query: 642 EIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQ 701
I+ PE+ +G I + +RG V + P + AY+P+ E FG++ +LR+ T G+
Sbjct: 608 TIEMPEEYMGDIMGDVTSRRGRV--DGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGR 665
Query: 702 AFPQCVFDHW 711
FDH+
Sbjct: 666 GTYTMYFDHY 675
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 63/118 (53%), Gaps = 18/118 (15%)
Query: 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGISL 77
RN+ ++AH+D GK+T T+ ++ G I + E D E +RGITI S +
Sbjct: 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
+E G R +N+ID+PGHVDF+ EV +LR+ DGA+ V+D GV
Sbjct: 71 AWE----------GHR------VNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGV 112
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 114/489 (23%), Positives = 214/489 (43%), Gaps = 71/489 (14%)
Query: 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRAD----EAERGITIKSTG 74
I N+ V+AHVD GK+TLT+SL+ +G I + G V TR D E +RGITI++
Sbjct: 2 IINIGVLAHVDAGKTTLTESLLYNSGAITE--LGSVDKGTTRTDNTLLERQRGITIQTGI 59
Query: 75 ISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
S +E T +N+ID+PGH+DF +EV +L + DGA++++ +G
Sbjct: 60 TSFQWENTK----------------VNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDG 103
Query: 135 V------CMYA-SKFGVDESKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEP 187
V +A K G+ + ++ +N D +T K SA +
Sbjct: 104 VQAQTRILFHALRKMGIPTIFFINKI-DQNGIDLSTVYQDIKEKLSAEI------VIKQK 156
Query: 188 IKQIINTCM-NDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMM- 245
++ N C+ N + + W T+ DL+ K + + ++ +
Sbjct: 157 VELYPNVCVTNFTESEQWD-------TVIEGNDDLLEKYMSGKSLEALELEQEESIRFQN 209
Query: 246 --IFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKM-IPASDKGRFF 302
+F L S ++NL E + Y++ R GP L + I + K +
Sbjct: 210 CSLFPLYHGSAKSNIGIDNLIEVITNKFYSSTHR-----GPSELCGNVFKIEYTKKRQRL 264
Query: 303 AFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVA 362
A+ R++SG + VR+ EK+ + V + ++ + ++ G V
Sbjct: 265 AYIRLYSGVLHLRDSVRV-------SEKEKIKVTEMYTSI---NGELCKIDRAYSGEIVI 314
Query: 363 MVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAK 422
+ ++F+ N+ L + K + P R + P+++ V+ L++ L ++
Sbjct: 315 LQ--NEFLKLNSVLGDTKLL---PQRKKIENPHPLLQTTVEPSKPEQREMLLDALLEISD 369
Query: 423 SDPMVVCTIEESG-EHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKS 481
SDP++ ++ + E I++ G++ +E+ LQ+ + EI +P V + E L+ +
Sbjct: 370 SDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKYH--VEIELKEPTVIYMERPLKNA 427
Query: 482 CRTVMSKSP 490
T+ + P
Sbjct: 428 EYTIHIEVP 436
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 22/122 (18%)
Query: 20 RNMSVIAHVDHGKSTLTDSL------VAAAGIIAQEVAGDVRMTDTRADEAERGITIKST 73
R ++I+H D GK+TLT+ L + AG I A +D E +RGI++ ++
Sbjct: 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWXELEKQRGISVTTS 73
Query: 74 GISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133
Y+ +YLINL+D+PGH DF+ + L D AL V+D +
Sbjct: 74 VXQFPYK----------------DYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAK 117
Query: 134 GV 135
GV
Sbjct: 118 GV 119
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 26/123 (21%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR--------MTDTRADEAERGITIKS 72
++I+H D GK+TLT+ L+ G I ++AG V+ +D A E ERGI++ +
Sbjct: 33 TFAIISHPDAGKTTLTEKLLLFGGAI--QMAGSVKARKAARHATSDWMAMERERGISVTT 90
Query: 73 TGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCI 132
+ + Y + ++NL+D+PGH DFS + L D ALVV+D
Sbjct: 91 SVMQFPY----------------RDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAA 134
Query: 133 EGV 135
+GV
Sbjct: 135 KGV 137
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 58/122 (47%), Gaps = 27/122 (22%)
Query: 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKS 72
MDFK NI N+ + H+DHGK+TL+ L A A D + +RGITI
Sbjct: 15 MDFK-NI-NLGIFGHIDHGKTTLSKVLTEIASTSAH---------DKLPESQKRGITI-- 61
Query: 73 TGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCI 132
D ++K E Y I L+D+PGH D V +A I D AL+VVD
Sbjct: 62 ----------DIGFSAFKLEN----YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAK 107
Query: 133 EG 134
EG
Sbjct: 108 EG 109
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 22/122 (18%)
Query: 20 RNMSVIAHVDHGKSTLTDSL------VAAAGIIAQEVAGDVRMTDTRADEAERGITIKST 73
R ++I+H D GK+T+T+ + + AG + + +D E +RGI+I ++
Sbjct: 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTS 73
Query: 74 GISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133
+ Y ++ L+NL+D+PGH DFS + L D L+V+D +
Sbjct: 74 VMQFPY----------------HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAK 117
Query: 134 GV 135
GV
Sbjct: 118 GV 119
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 22/122 (18%)
Query: 20 RNMSVIAHVDHGKSTLTDSL------VAAAGIIAQEVAGDVRMTDTRADEAERGITIKST 73
R ++I+H D GK+T+T+ + + AG + + +D E +RGI+I ++
Sbjct: 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTS 73
Query: 74 GISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133
+ Y ++ L+NL+D+PGH DFS + L D L+V+D +
Sbjct: 74 VMQFPY----------------HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAK 117
Query: 134 GV 135
GV
Sbjct: 118 GV 119
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 54/129 (41%), Gaps = 31/129 (24%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGII-------AQEVAGDVR--------MTDTRADEAE 65
N+ VI HVDHGKSTL L+ G I A+E A + + D +E E
Sbjct: 8 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 67
Query: 66 RGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGA 125
RG+TI T + +Y +ID+PGH DF + D A
Sbjct: 68 RGVTINLTFMRF----------------ETKKYFFTIIDAPGHRDFVKNMITGASQADAA 111
Query: 126 LVVVDCIEG 134
++VV +G
Sbjct: 112 ILVVSAKKG 120
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 20/120 (16%)
Query: 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRAD---EAERGITIKSTGI 75
IR ++++ H GK+TLT++L+ G A+E G V T D EA+ T TG+
Sbjct: 9 IRTVALVGHAGSGKTTLTEALLYKTG--AKERRGRVEEGTTTTDYTPEAKLHRTTVRTGV 66
Query: 76 SLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
A ++G R + L+D+PG+ DF E+ AL D ALV V GV
Sbjct: 67 ---------APLLFRGHR------VFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGV 111
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 396 PVVRVAVQCKVASDLPKLVEGLKRLAKSDP-MVVCTIEESGEHIVAGAGELHLEICLKDL 454
P V VA+ K +D +L E L++L + DP + + EE+GE ++ G GELHL + L
Sbjct: 381 PNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERL 440
Query: 455 QDDFMGGAEIIKSDPVVSFRETV 477
QD G E+ S P V +RET+
Sbjct: 441 QDY---GVEVEFSVPKVPYRETI 460
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 630 AKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFG 689
A P LLEP+Y +++ AP++ +G + S L +RG + M++ G L + A +P+ E
Sbjct: 567 AHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRIL-GMEQEGA-LSVVHAEVPLAEVLE 624
Query: 690 FSGTLRAATSGQAFPQCVFDHW 711
+ L T G F H+
Sbjct: 625 YYKALPGLTGGAGAYTLEFSHY 646
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 52/129 (40%), Gaps = 31/129 (24%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGII---------------AQEVAGDVRMTDTRADEAE 65
N+ VI HVDHGKSTL L+ G I +E + D +E E
Sbjct: 11 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 70
Query: 66 RGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGA 125
RGITI T + +Y+ +ID+PGH DF + D A
Sbjct: 71 RGITIDLTFMKF----------------ETKKYVFTIIDAPGHRDFVKNMITGASQADAA 114
Query: 126 LVVVDCIEG 134
++VV +G
Sbjct: 115 ILVVSARKG 123
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 52/129 (40%), Gaps = 31/129 (24%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGII---------------AQEVAGDVRMTDTRADEAE 65
N+ VI HVDHGKSTL L+ G I +E + D +E E
Sbjct: 8 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 67
Query: 66 RGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGA 125
RGITI T + +Y+ +ID+PGH DF + D A
Sbjct: 68 RGITIDLTFMKF----------------ETKKYVFTIIDAPGHRDFVKNMITGASQADAA 111
Query: 126 LVVVDCIEG 134
++VV +G
Sbjct: 112 ILVVSARKG 120
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 20/116 (17%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIK-------ST 73
N+ ++ HVDHGK+TLT +L TDT ++E RGITIK
Sbjct: 13 NIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELRRGITIKIGFADAEIR 59
Query: 74 GISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVV 129
S + + Y G ++ IDSPGH + + A + DGA++V+
Sbjct: 60 RCSNCGRYSTSPICPYCGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDGAILVI 115
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 22/117 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRADEAERGITIKSTGISL 77
N+ I HVDHGK+TLT ++ ++A+ G R D +E RGITI ++ +
Sbjct: 298 NVGTIGHVDHGKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 354
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
D + Y +D PGH D+ + DGA++VV +G
Sbjct: 355 -----DTPTRHYAH-----------VDCPGHADYVKNMITGAAQMDGAILVVAATDG 395
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 22/117 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRADEAERGITIKSTGISL 77
N+ I HVDHGK+TLT ++ ++A+ G R D +E RGITI ++ +
Sbjct: 14 NVGTIGHVDHGKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 70
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
D + Y +D PGH D+ + DGA++VV +G
Sbjct: 71 -----DTPTRHYA-----------HVDCPGHADYVKNMITGAAQMDGAILVVAATDG 111
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 57/118 (48%), Gaps = 23/118 (19%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRADEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L VAAA EV GD+ D +E RGITI + +
Sbjct: 14 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 70
Query: 77 LYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
YE A + Y + +D PGH D+ + DGA++VV +G
Sbjct: 71 --YET---AKRHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADG 112
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 57/118 (48%), Gaps = 23/118 (19%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRADEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L VAAA EV GD+ D +E RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 77 LYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
YE A + Y + +D PGH D+ + DGA++VV +G
Sbjct: 70 --YET---AKRHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADG 111
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 22/117 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRADEAERGITIKSTGISL 77
N+ I HVDHGK+TLT ++ ++A+ G R D +E RGITI ++ +
Sbjct: 14 NVGTIGHVDHGKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 70
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
D + Y +D PGH D+ + DGA++VV +G
Sbjct: 71 -----DTPTRHYA-----------HVDCPGHADYVKNMITGAAQMDGAILVVAATDG 111
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 57/118 (48%), Gaps = 23/118 (19%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRADEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L VAAA EV GD+ D +E RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 77 LYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
YE A + Y + +D PGH D+ + DGA++VV +G
Sbjct: 70 --YET---AKRHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADG 111
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 57/118 (48%), Gaps = 23/118 (19%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRADEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L VAAA EV GD+ D +E RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 77 LYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
YE A + Y + +D PGH D+ + DGA++VV +G
Sbjct: 70 --YET---AKRHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADG 111
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 22/117 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRADEAERGITIKSTGISL 77
N+ I HVDHGK+TLT ++ ++A+ G R D +E RGITI ++ +
Sbjct: 13 NVGTIGHVDHGKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 69
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
D + Y +D PGH D+ + DGA++VV +G
Sbjct: 70 -----DTPTRHYA-----------HVDCPGHADYVKNMITGAAQMDGAILVVAATDG 110
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 22/117 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRADEAERGITIKSTGISL 77
N+ I HVDHGK+TLT ++ ++A+ G R D +E RGITI ++ +
Sbjct: 13 NVGTIGHVDHGKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 69
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
D + Y +D PGH D+ + DGA++VV +G
Sbjct: 70 -----DTPTRHYA-----------HVDCPGHADYVKNMITGAAQMDGAILVVAATDG 110
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 57/118 (48%), Gaps = 23/118 (19%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRADEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L VAAA EV GD+ D +E RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 77 LYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
YE A + Y + +D PGH D+ + DGA++VV +G
Sbjct: 70 --YET---AKRHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADG 111
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 22/117 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRADEAERGITIKSTGISL 77
N+ I HVDHGK+TLT ++ ++A+ G R D +E RGITI ++ +
Sbjct: 13 NVGTIGHVDHGKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 69
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
D + Y +D PGH D+ + DGA++VV +G
Sbjct: 70 -----DTPTRHYA-----------HVDCPGHADYVKNMITGAAQMDGAILVVAATDG 110
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 57/118 (48%), Gaps = 23/118 (19%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRADEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L VAAA EV GD+ D +E RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 77 LYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
YE A + Y + +D PGH D+ + DGA++VV +G
Sbjct: 70 --YET---AKRHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADG 111
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 22/117 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRADEAERGITIKSTGISL 77
N+ I HVDHGK+TLT ++ ++A+ G R D +E RGITI ++ +
Sbjct: 5 NVGTIGHVDHGKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 61
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
D + Y +D PGH D+ + DGA++VV +G
Sbjct: 62 -----DTPTRHYA-----------HVDCPGHADYVKNMITGAAQMDGAILVVAATDG 102
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 22/117 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRADEAERGITIKSTGISL 77
N+ I HVDHGK+TLT ++ ++A+ G R D +E RGITI ++ +
Sbjct: 298 NVGTIGHVDHGKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 354
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
D + Y +D PGH D+ + DGA++VV +G
Sbjct: 355 -----DTPTRHYA-----------HVDCPGHADYVKNMITGAAQMDGAILVVAATDG 395
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 20/116 (17%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYY- 79
N+ ++ HVDHGK+TLT +L TDT ++E RGITIK
Sbjct: 12 NIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELRRGITIKIGFADAEIR 58
Query: 80 ------EMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVV 129
+ + Y G ++ ID+PGH + + A + DGA++V+
Sbjct: 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVI 114
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 20/116 (17%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80
N+ ++ HVDHGK+TLT +L TDT ++E RGITIK
Sbjct: 12 NIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELRRGITIKIGFADAEIR 58
Query: 81 MTDDALK-------SYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVV 129
+ + Y G ++ ID+PGH + + A + DGA++V+
Sbjct: 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVI 114
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 20/116 (17%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80
N+ + HVDHGK+TLT +L TDT ++E RGITIK
Sbjct: 12 NIGXVGHVDHGKTTLTKALTGV-------------WTDTHSEELRRGITIKIGFADAEIR 58
Query: 81 MTDDALK-------SYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVV 129
+ + Y G ++ ID+PGH + A + DGA++V+
Sbjct: 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAILVI 114
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 23/118 (19%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRADEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L V AA EV GD+ D +E RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 77 LYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
YE A + Y + +D PGH D+ + DGA++VV +G
Sbjct: 70 --YET---AKRHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADG 111
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 23/118 (19%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRADEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L V AA EV GD+ D +E RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 77 LYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
YE A + Y + +D PGH D+ + DGA++VV +G
Sbjct: 70 --YET---AKRHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADG 111
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 23/118 (19%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRADEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L V AA EV GD+ D +E RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 77 LYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
YE A + Y + +D PGH D+ + DGA++VV +G
Sbjct: 70 --YET---AKRHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADG 111
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 23/118 (19%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRADEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L V AA EV GD+ D +E RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 77 LYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
YE A + Y + +D PGH D+ + DGA++VV +G
Sbjct: 70 --YET---AKRHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADG 111
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 23/118 (19%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRADEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L VAAA EV GD+ D +E RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENRNVEVKDYGDI---DKAREERARGITINTAHVE 69
Query: 77 LYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
YE A + Y + +D GH D+ + DGA++VV +G
Sbjct: 70 --YET---AKRHY-----------SHVDCRGHADYIKNMITGAAQMDGAILVVSAADG 111
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 30/114 (26%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80
N+ I HVDHGK+TLT ++ ++A+ G A RGITI ++ +
Sbjct: 13 NVGTIGHVDHGKTTLTAAITT---VLAKTYGG-----------AARGITINTSHVEY--- 55
Query: 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
D + Y +D PGH D+ + DGA++VV +G
Sbjct: 56 --DTPTRHYA-----------HVDCPGHADYVKNMITGAAQMDGAILVVAATDG 96
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 27/126 (21%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIK----STGIS 76
N+ V+ HVDHGK+TL A GI T ++E +RG+TIK T I
Sbjct: 11 NIGVVGHVDHGKTTLVQ---AITGI----------WTSKHSEELKRGMTIKLGYAETNIG 57
Query: 77 LYYE-------MTDDALKSYKGERNGNEYL--INLIDSPGHVDFSSEVTAALRITDGALV 127
+ +T+ + KS G + ++L I+ ID+PGH + + + + DGA++
Sbjct: 58 VCESCKKPEAYVTEPSCKSC-GSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAIL 116
Query: 128 VVDCIE 133
VV E
Sbjct: 117 VVAANE 122
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 27/122 (22%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIK----STGIS 76
N+ V+ HVDHGK+TL A GI T ++E +RG+TIK T I
Sbjct: 10 NIGVVGHVDHGKTTLVQ---AITGI----------WTSKHSEELKRGMTIKLGYAETNIG 56
Query: 77 LYYE-------MTDDALKSYKGERNGNEYL--INLIDSPGHVDFSSEVTAALRITDGALV 127
+ +T+ + KS G + ++L I+ ID+PGH + + + + DGA++
Sbjct: 57 VCESCKKPEAYVTEPSCKSC-GSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAIL 115
Query: 128 VV 129
VV
Sbjct: 116 VV 117
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 53/124 (42%), Gaps = 31/124 (25%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGII------------AQEVAGDVR---MTDTRADEAE 65
N+ VI HVD GKST T L+ G I A+ G + + D E E
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 68
Query: 66 RGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGA 125
RGITI D AL ++ + Y + +ID+PGH DF + D A
Sbjct: 69 RGITI------------DIALWKFETPK----YQVTVIDAPGHRDFIKNMITGTSQADCA 112
Query: 126 LVVV 129
++++
Sbjct: 113 ILII 116
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 20/116 (17%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80
N+ ++ HVDHGK++LT +L TD ++E RGI+I+
Sbjct: 10 NIGMVGHVDHGKTSLTKALTGV-------------WTDRHSEELRRGISIRLGYADCEIR 56
Query: 81 MTDDALKSYKGERNGN-----EYL--INLIDSPGHVDFSSEVTAALRITDGALVVV 129
R N E+L ++ +DSPGH + + + + DGA++V+
Sbjct: 57 KCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVI 112
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 33/137 (24%)
Query: 24 VIAHVDHGKSTLTDSLVAAAGIIAQ----------EVAGDVR-----MTDTRADEAERGI 68
V+ HVD GKSTL L+ I+ Q E G + D +E ERG+
Sbjct: 38 VLGHVDAGKSTLXGRLLYDLNIVNQSQLRKLQRESETXGKSSFKFAWIXDQTNEERERGV 97
Query: 69 TIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVV 128
T+ S+ N ++D+PGH DF + D A++
Sbjct: 98 TVS-------------ICTSHFSTHRAN---FTIVDAPGHRDFVPNAIXGISQADXAILC 141
Query: 129 VDCIEGVCMYASKFGVD 145
VDC + S F +D
Sbjct: 142 VDC--STNAFESGFDLD 156
>pdb|1JQS|C Chain C, Fitting Of L11 Protein And Elongation Factor G (Domain G'
And V) In The Cryo-Em Map Of E. Coli 70s Ribosome Bound
With Ef-G And Gmppcp, A Nonhydrolysable Gtp Analog
Length = 68
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 641 VEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSG 700
VE+ PE+ +G + LN +RG + R + I+A++P+ E FG++ LR+ T G
Sbjct: 3 VEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEMFGYATDLRSKTQG 60
Query: 701 QA 702
+
Sbjct: 61 RG 62
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 22/117 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRM---TDTRADEAERGITIKSTGISL 77
N+ I HVDHGK+TLT A I+A+ + D +E RGITI + +
Sbjct: 5 NVGTIGHVDHGKTTLT---AAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEY 61
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
A + Y D PGH D+ + DG ++VV +G
Sbjct: 62 -----STAARHYAH-----------TDCPGHADYVKNMITGTAPLDGCILVVAANDG 102
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 33/137 (24%)
Query: 24 VIAHVDHGKSTLTDSLVAAAGIIAQ----------EVAGDVR-----MTDTRADEAERGI 68
V+ HVD GKSTL L+ I+ Q E G + D +E ERG+
Sbjct: 38 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGV 97
Query: 69 TIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVV 128
T+ S+ N ++D+PGH DF + D A++
Sbjct: 98 TVS-------------ICTSHFSTHRAN---FTIVDAPGHRDFVPNAIMGISQADMAILC 141
Query: 129 VDCIEGVCMYASKFGVD 145
VDC + S F +D
Sbjct: 142 VDC--STNAFESGFDLD 156
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 33/137 (24%)
Query: 24 VIAHVDHGKSTLTDSLVAAAGIIAQ----------EVAGDVR-----MTDTRADEAERGI 68
V+ HVD GKSTL L+ I+ Q E G + D +E ERG+
Sbjct: 172 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGV 231
Query: 69 TIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVV 128
T+ S+ N ++D+PGH DF + D A++
Sbjct: 232 TVS-------------ICTSHFSTHRAN---FTIVDAPGHRDFVPNAIMGISQADMAILC 275
Query: 129 VDCIEGVCMYASKFGVD 145
VDC + S F +D
Sbjct: 276 VDC--STNAFESGFDLD 290
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 46/117 (39%), Gaps = 22/117 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRM---TDTRADEAERGITIKSTGISL 77
N+ I HVDHGK+TLT A I+A+ + D +E RGITI + +
Sbjct: 16 NVGTIGHVDHGKTTLT---AAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEY 72
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
A + Y D PGH D+ DG ++VV +G
Sbjct: 73 -----STAARHYAH-----------TDCPGHADYVKNXITGTAPLDGCILVVAANDG 113
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 16/111 (14%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80
N+ V+ HVDHGK+TL A GI T + AE I + +
Sbjct: 10 NIGVVGHVDHGKTTLVQ---AITGI----------WTSKKLGYAETNIGVCESCKKPEAY 56
Query: 81 MTDDALKSYKGERNGNEYL--INLIDSPGHVDFSSEVTAALRITDGALVVV 129
+T+ + KS G + ++L I+ ID+PGH + + + + DGA++VV
Sbjct: 57 VTEPSCKSC-GSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVV 106
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 30/147 (20%)
Query: 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEM 81
+SV+ HVDHGK+TL D + +A +A AG GIT + ++
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSA--VASREAG--------------GITQHIGATEIPMDV 51
Query: 82 TDDALKSYKGERNGNEYLINL--IDSPGHVDFSSEVTAALRITDGALVVVDCIEG----- 134
+ + + + E L L ID+PGH F++ + D A+++VD EG
Sbjct: 52 IEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQT 111
Query: 135 ------VCMYASKFGVDESKMMERLWG 155
+ MY + F V +K ++R+ G
Sbjct: 112 QEALNILRMYRTPFVVAANK-IDRIHG 137
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 31/114 (27%)
Query: 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEM 81
++++ HVDHGK+TL D L R T A EA GI+ +
Sbjct: 7 VTIMGHVDHGKTTLLDKL---------------RKTQVAAMEA--------GGITQHIGA 43
Query: 82 TDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
+L S GE+ I +D+PGH FS+ ++TD ++VV +GV
Sbjct: 44 FLVSLPS--GEK------ITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGV 89
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEM 81
+SV+ HVDHGK+TL D + +A +A AG GIT + ++
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSA--VASREAG--------------GITQHIGATEIPXDV 51
Query: 82 TDDALKSYKGERNGNEYLINL--IDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
+ + + + E L L ID+PGH F++ + D A+++VD EG
Sbjct: 52 IEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEG 106
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80
N+ V+ HVDHGK+TL A GI + + + + AE I + +
Sbjct: 10 NIGVVGHVDHGKTTLVQ---AITGIWTSKHSEET----IKLGYAETNIGVCESCKKPEAY 62
Query: 81 MTDDALKSYKGERNGNEYL--INLIDSPGHVDFSSEVTAALRITDGALVVV 129
+T+ + KS G + ++L I+ ID+PGH + + + + DGA++VV
Sbjct: 63 VTEPSCKSC-GSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVV 112
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 32/114 (28%)
Query: 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEM 81
++++ HVDHGK+TL D++ ++ E E G + G Y++
Sbjct: 11 VTIMGHVDHGKTTLLDAI-----------------RHSKVTEQEAGGITQHIG---AYQV 50
Query: 82 TDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
T N+ I +D+PGH F++ ++TD ++VV +GV
Sbjct: 51 T------------VNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGV 92
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 32/114 (28%)
Query: 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEM 81
++++ HVDHGK++L + +R T + EA GIT I Y+
Sbjct: 7 VTIMGHVDHGKTSLLEY---------------IRSTKVASGEA-GGIT---QHIGAYHVE 47
Query: 82 TDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
T++ + I +D+PGH F+S + TD ++VV +GV
Sbjct: 48 TENGM-------------ITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGV 88
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 31/126 (24%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIA--------QEVAGDVR-------MTDTRADEAE 65
++ V HVD GKST+ ++ G I E A + + DT +E
Sbjct: 179 HLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERA 238
Query: 66 RGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGA 125
RG+T+ D A +++ ++ + + D+PGH DF S + A D A
Sbjct: 239 RGVTM------------DVASTTFESDKK----IYEIGDAPGHRDFISGMIAGASSADFA 282
Query: 126 LVVVDC 131
++VVD
Sbjct: 283 VLVVDS 288
>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid-
Regulated Kinase 1 In Complex With Amp-Pnp
pdb|3HDM|A Chain A, Crystal Structure Of Serum And Glucocorticoid-Regulated
Kinase 1 In Complex With Compound 1
pdb|3HDN|A Chain A, Crystal Structure Of Serum And Glucocorticoid-Regulated
Kinase 1 In Complex With Compound 2
Length = 373
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 10/107 (9%)
Query: 450 CLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAE 509
CL + + + G S + +L K + PN N AR L EGL +
Sbjct: 224 CLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPLQL----KPNITN----SARHLLEGLLQ 275
Query: 510 AIDDGRIGPRDD-PKARSKILSEEFGWDKDLAKKIW-CFGPETTGPN 554
R+G +DD + +S + WD + KKI F P +GPN
Sbjct: 276 KDRTKRLGAKDDFMEIKSHVFFSLINWDDLINKKITPPFNPNVSGPN 322
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 67/190 (35%), Gaps = 28/190 (14%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80
N+ I HVD GKST+ ++ G++ + + + A E R S + E
Sbjct: 19 NVVFIGHVDAGKSTIGGQIMYLTGMVDKRT---LEKYEREAKEKNRETWYLSWALDTNQE 75
Query: 81 MTDDALKSYKGERNGNEYL------INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
D K G Y ++D+PGH F + D A++V+ +G
Sbjct: 76 ERDKG----KTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKG 131
Query: 135 VCMYASKFG--VDESKMMERLWGE-------NFFDPATKKWTTKNTGSATCKRGFVQFC- 184
+ G E M+ + G N D T W+ N CK V F
Sbjct: 132 EFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS--NERYEECKEKLVPFLK 189
Query: 185 ---YEPIKQI 191
+ P K I
Sbjct: 190 KVGFNPKKDI 199
>pdb|3UJ3|X Chain X, Crystal Structure Of The Synaptic Tetramer Of The
G-Segment Invertase (Gin)
Length = 193
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 50/116 (43%), Gaps = 20/116 (17%)
Query: 408 SDLPKLVEGLKRLAKSDPMVVCTIEESG---EHIVAGAGELHLE-ICLKDLQDDFMGGAE 463
+D P L LKRL K D +VV ++ G +H+++ GEL I + L D
Sbjct: 40 TDRPGLKRALKRLQKGDTLVVWKLDRLGRSMKHLISLVGELRERGINFRSLTD------S 93
Query: 464 IIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPR 519
I S P+ F VM L +E R + GLA A + GRIG R
Sbjct: 94 IDTSSPMGRF--------FFHVMGALAEVERELIIE-RTM-AGLAAARNKGRIGGR 139
>pdb|2HCJ|A Chain A, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
pdb|2HDN|A Chain A, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|C Chain C, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|E Chain E, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|G Chain G, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|I Chain I, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|K Chain K, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 37
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR 55
N+ I HVDHGK+TLT A ++A+ G R
Sbjct: 6 NVGTIGHVDHGKTTLT---AAITTVLAKTYGGAAR 37
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 13/120 (10%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80
N+ I HVD GKSTL +++ G++ + + + A EA + +S +S +
Sbjct: 45 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKI---EREAKEAGK----ESWYLSWALD 97
Query: 81 MTDDALKSYKGERNGNEYL------INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
T + + K G Y +L+D+PGH + + + D ++V+ G
Sbjct: 98 STSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG 157
>pdb|4FRF|A Chain A, Structural Studies And Protein Engineering Of Inositol
Phosphate Multikinase
pdb|4FRF|B Chain B, Structural Studies And Protein Engineering Of Inositol
Phosphate Multikinase
Length = 275
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 116 TAALRITDGALVVVDCIEGVCMYASKFGVDESKMMERLWGENFFDPATKKWTTKNTGSAT 175
T A+ +DGA ++V +E + +K V + KM R W + + +K K+TG+ T
Sbjct: 59 TQAVEGSDGAAMMV--LENLLAEYTKPSVMDVKMGSRTWYPDASEEYIQKCLKKDTGTTT 116
Query: 176 CKRGF 180
GF
Sbjct: 117 VSSGF 121
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 512
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 18/184 (9%)
Query: 424 DPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMG--GAEI-IKSDP----VVSFRET 476
D + VC I SG H + LH + K+ + D A+I + S P + + T
Sbjct: 184 DNIRVCKILGSGVH---SSSVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETKGT 240
Query: 477 VLEKSCRTVMSKSPNKHNRLYMEARPL-EEGLAEAIDDGRIGP---RDDPKARSKILSEE 532
VL KS +M+ S + N + + + + + G + GR+ K ++
Sbjct: 241 VLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLVRLN 300
Query: 533 FGWD-KDLAKKIWCFGPETTGPNMVVDM--CKGVQYLNEIKDSVVAGFQWASKEGALAEE 589
WD + L K + P ++ +M C V YL+E+ D+ V F+ ++GA++
Sbjct: 301 SKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSV-YLSEVGDTQVVVFKHEKEDGAISTI 359
Query: 590 NMRG 593
+RG
Sbjct: 360 VLRG 363
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,333,742
Number of Sequences: 62578
Number of extensions: 943050
Number of successful extensions: 2368
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2102
Number of HSP's gapped (non-prelim): 149
length of query: 752
length of database: 14,973,337
effective HSP length: 106
effective length of query: 646
effective length of database: 8,340,069
effective search space: 5387684574
effective search space used: 5387684574
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)