Query 004467
Match_columns 752
No_of_seqs 281 out of 2254
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 23:53:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004467.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004467hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0469 Elongation factor 2 [T 100.0 1E-162 3E-167 1264.2 47.8 748 1-752 1-842 (842)
2 PLN00116 translation elongatio 100.0 1E-138 3E-143 1239.0 74.7 752 1-752 1-843 (843)
3 PTZ00416 elongation factor 2; 100.0 2E-137 3E-142 1226.9 68.5 743 1-752 1-836 (836)
4 KOG0468 U5 snRNP-specific prot 100.0 3E-125 6E-130 1011.9 50.2 735 2-751 111-954 (971)
5 COG0480 FusA Translation elong 100.0 8E-123 2E-127 1058.2 54.7 625 16-738 7-697 (697)
6 PRK07560 elongation factor EF- 100.0 2E-121 4E-126 1081.2 61.4 686 5-750 6-731 (731)
7 TIGR00490 aEF-2 translation el 100.0 2E-117 4E-122 1043.9 59.8 687 6-741 6-720 (720)
8 KOG0465 Mitochondrial elongati 100.0 2E-118 3E-123 959.2 33.4 615 16-730 36-719 (721)
9 KOG0467 Translation elongation 100.0 7E-111 2E-115 918.0 38.9 712 13-752 3-884 (887)
10 PRK12739 elongation factor G; 100.0 6E-108 1E-112 961.6 56.9 616 16-731 5-687 (691)
11 PRK00007 elongation factor G; 100.0 1E-107 2E-112 959.1 57.4 616 16-731 7-690 (693)
12 TIGR00484 EF-G translation elo 100.0 2E-105 3E-110 942.2 56.8 617 15-731 6-687 (689)
13 PRK13351 elongation factor G; 100.0 2E-102 5E-107 917.9 55.5 615 16-729 5-685 (687)
14 PRK12740 elongation factor G; 100.0 4.3E-97 9E-102 872.1 53.8 597 25-718 1-662 (668)
15 KOG0464 Elongation factor G [T 100.0 2.7E-93 5.8E-98 730.0 23.7 607 16-717 34-740 (753)
16 TIGR01394 TypA_BipA GTP-bindin 100.0 2E-76 4.4E-81 675.8 41.5 447 19-718 1-475 (594)
17 PRK05433 GTP-binding protein L 100.0 3.3E-74 7.1E-79 660.3 44.7 476 14-733 2-519 (600)
18 PRK10218 GTP-binding protein; 100.0 8E-74 1.7E-78 652.9 41.0 449 16-717 2-479 (607)
19 TIGR01393 lepA GTP-binding pro 100.0 8.1E-73 1.8E-77 648.2 45.6 474 17-733 1-516 (595)
20 KOG0462 Elongation factor-type 100.0 4.4E-67 9.6E-72 557.5 25.0 462 15-717 55-535 (650)
21 COG0481 LepA Membrane GTPase L 100.0 9E-65 2E-69 531.3 29.7 461 15-713 5-483 (603)
22 COG1217 TypA Predicted membran 100.0 4.6E-64 1E-68 524.3 33.4 455 17-718 3-479 (603)
23 PRK00741 prfC peptide chain re 100.0 2.1E-62 4.5E-67 553.9 32.6 409 13-478 4-472 (526)
24 TIGR00503 prfC peptide chain r 100.0 5.6E-61 1.2E-65 542.3 31.5 404 11-473 3-468 (527)
25 COG4108 PrfC Peptide chain rel 100.0 6.2E-50 1.3E-54 416.9 18.9 401 15-472 8-468 (528)
26 cd01683 EF2_IV_snRNP EF-2_doma 100.0 1.5E-39 3.3E-44 316.5 19.4 174 468-641 1-178 (178)
27 COG5256 TEF1 Translation elong 100.0 2.7E-38 5.8E-43 331.4 16.5 277 15-378 3-313 (428)
28 PLN00043 elongation factor 1-a 100.0 1.4E-35 3E-40 330.6 16.5 280 15-379 3-317 (447)
29 PTZ00141 elongation factor 1- 100.0 1.4E-34 3E-39 322.9 17.6 278 15-379 3-317 (446)
30 cd01681 aeEF2_snRNP_like_IV Th 100.0 6.7E-34 1.4E-38 279.2 18.8 173 468-640 1-177 (177)
31 CHL00071 tufA elongation facto 100.0 1.1E-33 2.3E-38 314.2 19.8 283 11-380 4-307 (409)
32 PLN03126 Elongation factor Tu; 100.0 6.8E-33 1.5E-37 310.0 21.3 288 6-380 68-376 (478)
33 PRK12736 elongation factor Tu; 100.0 5.4E-33 1.2E-37 307.0 19.2 279 14-380 7-297 (394)
34 TIGR00485 EF-Tu translation el 100.0 5.5E-32 1.2E-36 299.5 20.1 280 13-380 6-297 (394)
35 KOG0458 Elongation factor 1 al 100.0 3.2E-32 7E-37 294.9 14.9 279 15-377 173-487 (603)
36 PRK12735 elongation factor Tu; 100.0 1.5E-31 3.2E-36 295.8 20.5 283 11-380 4-299 (396)
37 PRK00049 elongation factor Tu; 100.0 2.1E-31 4.5E-36 294.4 20.8 282 12-380 5-299 (396)
38 COG2895 CysN GTPases - Sulfate 100.0 1.8E-32 3.9E-37 279.6 9.4 327 17-436 4-359 (431)
39 PLN03127 Elongation factor Tu; 100.0 6E-31 1.3E-35 293.1 22.3 273 15-380 57-350 (447)
40 TIGR02034 CysN sulfate adenyly 100.0 9.1E-32 2E-36 298.2 15.2 271 21-380 2-300 (406)
41 cd01886 EF-G Elongation factor 100.0 7.2E-32 1.6E-36 282.1 12.2 209 21-252 1-270 (270)
42 PRK12317 elongation factor 1-a 100.0 1.8E-31 3.9E-36 298.9 15.6 278 16-380 3-310 (425)
43 COG0050 TufB GTPases - transla 100.0 2E-31 4.4E-36 265.1 13.7 279 13-380 6-297 (394)
44 PRK05124 cysN sulfate adenylyl 100.0 4.9E-31 1.1E-35 296.6 18.2 278 15-380 23-328 (474)
45 TIGR00483 EF-1_alpha translati 100.0 1.7E-30 3.8E-35 290.8 16.2 280 14-380 2-312 (426)
46 KOG0460 Mitochondrial translat 100.0 6.6E-31 1.4E-35 266.2 9.9 272 17-380 52-341 (449)
47 cd04169 RF3 RF3 subfamily. Pe 100.0 1.2E-30 2.5E-35 272.7 12.1 212 18-252 1-267 (267)
48 cd04168 TetM_like Tet(M)-like 100.0 8.2E-30 1.8E-34 262.1 14.3 207 21-252 1-237 (237)
49 PTZ00327 eukaryotic translatio 100.0 2.1E-28 4.5E-33 271.9 19.1 268 18-380 33-351 (460)
50 PRK05506 bifunctional sulfate 100.0 2E-28 4.2E-33 286.5 16.5 274 18-380 23-324 (632)
51 PRK05306 infB translation init 100.0 3.4E-27 7.4E-32 275.6 23.5 300 17-446 288-628 (787)
52 cd01885 EF2 EF2 (for archaea a 99.9 5.9E-28 1.3E-32 244.9 12.3 129 20-154 1-136 (222)
53 KOG0459 Polypeptide release fa 99.9 2.7E-28 5.8E-33 252.5 5.2 281 15-380 75-390 (501)
54 TIGR00487 IF-2 translation ini 99.9 2E-25 4.3E-30 255.5 22.9 290 18-430 86-418 (587)
55 PRK10512 selenocysteinyl-tRNA- 99.9 4.9E-26 1.1E-30 262.5 17.7 240 21-380 2-260 (614)
56 cd04170 EF-G_bact Elongation f 99.9 2.1E-26 4.6E-31 242.3 12.6 209 21-252 1-268 (268)
57 PRK04000 translation initiatio 99.9 9.9E-26 2.1E-30 250.0 17.2 270 16-380 6-318 (411)
58 PF00009 GTP_EFTU: Elongation 99.9 1E-26 2.2E-31 231.7 6.3 122 17-154 1-133 (188)
59 COG5257 GCD11 Translation init 99.9 9.3E-25 2E-29 220.5 18.9 319 18-445 9-363 (415)
60 TIGR03680 eif2g_arch translati 99.9 6.2E-25 1.3E-29 243.9 18.1 267 18-380 3-313 (406)
61 CHL00189 infB translation init 99.9 2.2E-24 4.7E-29 249.8 22.4 305 17-447 242-584 (742)
62 COG3276 SelB Selenocysteine-sp 99.9 1.1E-24 2.4E-29 230.9 14.7 240 21-378 2-254 (447)
63 TIGR00475 selB selenocysteine- 99.9 5E-24 1.1E-28 245.4 18.0 236 21-374 2-254 (581)
64 cd01884 EF_Tu EF-Tu subfamily. 99.9 9.5E-25 2.1E-29 217.8 9.1 120 19-154 2-129 (195)
65 COG5258 GTPBP1 GTPase [General 99.9 4.1E-23 8.8E-28 212.7 14.2 289 16-378 114-435 (527)
66 cd04098 eEF2_C_snRNP eEF2_C_sn 99.9 1.3E-23 2.9E-28 177.9 6.6 80 636-715 1-80 (80)
67 KOG0461 Selenocysteine-specifi 99.9 5.6E-23 1.2E-27 208.7 11.5 268 18-379 6-285 (522)
68 cd01883 EF1_alpha Eukaryotic e 99.9 1.1E-22 2.4E-27 207.5 6.1 118 21-154 1-148 (219)
69 COG0532 InfB Translation initi 99.9 7.2E-21 1.6E-25 207.3 18.7 239 18-374 4-256 (509)
70 cd04166 CysN_ATPS CysN_ATPS su 99.8 4.4E-22 9.6E-27 201.5 5.1 118 21-154 1-141 (208)
71 KOG1145 Mitochondrial translat 99.8 2.4E-20 5.2E-25 200.4 18.4 291 17-429 151-503 (683)
72 PF00679 EFG_C: Elongation fac 99.8 2.2E-21 4.8E-26 168.2 7.4 85 633-718 1-85 (89)
73 smart00838 EFG_C Elongation fa 99.8 2.3E-21 5.1E-26 166.7 6.0 83 634-718 1-83 (85)
74 PF03764 EFG_IV: Elongation fa 99.8 8.4E-21 1.8E-25 174.7 8.6 98 532-631 23-120 (120)
75 PRK04004 translation initiatio 99.8 6.2E-20 1.3E-24 211.0 16.5 283 18-369 5-319 (586)
76 cd04167 Snu114p Snu114p subfam 99.8 8.9E-21 1.9E-25 192.8 8.4 125 20-155 1-135 (213)
77 cd04096 eEF2_snRNP_like_C eEF2 99.8 8.3E-21 1.8E-25 161.3 6.6 80 636-715 1-80 (80)
78 cd04097 mtEFG1_C mtEFG1_C: C-t 99.8 1.4E-20 3.1E-25 159.0 6.6 78 636-715 1-78 (78)
79 cd03711 Tet_C Tet_C: C-terminu 99.8 2.1E-20 4.5E-25 157.9 6.1 78 636-715 1-78 (78)
80 cd03713 EFG_mtEFG_C EFG_mtEFG_ 99.8 4.4E-20 9.4E-25 156.2 6.4 78 636-715 1-78 (78)
81 cd03710 BipA_TypA_C BipA_TypA_ 99.8 1.7E-19 3.7E-24 152.6 7.2 78 636-714 1-78 (79)
82 cd01891 TypA_BipA TypA (tyrosi 99.8 5E-19 1.1E-23 177.2 11.4 121 18-154 1-128 (194)
83 cd01514 Elongation_Factor_C El 99.8 1.8E-19 3.8E-24 152.9 6.5 79 636-715 1-79 (79)
84 PF14492 EFG_II: Elongation Fa 99.8 2.8E-19 6.2E-24 149.1 7.5 73 394-468 2-75 (75)
85 TIGR00491 aIF-2 translation in 99.8 5.8E-18 1.3E-22 193.8 18.2 121 19-155 4-133 (590)
86 cd03709 lepA_C lepA_C: This fa 99.8 8.3E-19 1.8E-23 148.6 6.2 78 636-714 1-79 (80)
87 cd01890 LepA LepA subfamily. 99.7 3E-18 6.6E-23 168.9 8.4 123 20-154 1-130 (179)
88 cd01888 eIF2_gamma eIF2-gamma 99.7 2.3E-18 5.1E-23 173.6 3.8 122 20-154 1-148 (203)
89 cd01889 SelB_euk SelB subfamil 99.7 2.3E-17 5E-22 164.9 10.6 123 21-154 2-131 (192)
90 cd04165 GTPBP1_like GTPBP1-lik 99.7 6E-18 1.3E-22 172.5 4.6 130 22-154 2-149 (224)
91 cd04090 eEF2_II_snRNP Loc2 eEF 99.7 6E-16 1.3E-20 135.6 11.9 94 285-378 1-94 (94)
92 cd01684 Tet_like_IV EF-G_domai 99.6 1.5E-15 3.4E-20 138.0 13.0 112 471-631 1-115 (115)
93 cd01680 EFG_like_IV Elongation 99.6 3.7E-15 8.1E-20 136.3 12.0 77 553-631 40-116 (116)
94 KOG0466 Translation initiation 99.6 3.7E-16 8E-21 157.0 4.3 252 17-363 36-336 (466)
95 cd03690 Tet_II Tet_II: This su 99.6 4.8E-15 1E-19 127.2 10.3 83 282-377 1-84 (85)
96 PRK14845 translation initiatio 99.6 2.8E-14 6.1E-19 170.9 17.9 284 20-370 463-775 (1049)
97 cd04092 mtEFG2_II_like mtEFG2_ 99.5 3.1E-14 6.8E-19 121.8 9.8 82 285-378 1-83 (83)
98 cd00881 GTP_translation_factor 99.5 1.8E-14 3.8E-19 142.9 7.8 118 21-154 1-125 (189)
99 cd01434 EFG_mtEFG1_IV EFG_mtEF 99.5 3.9E-14 8.4E-19 129.4 8.5 76 553-631 40-116 (116)
100 cd03700 eEF2_snRNP_like_II EF2 99.5 1.6E-13 3.5E-18 120.0 11.4 91 285-378 1-92 (93)
101 cd03689 RF3_II RF3_II: this su 99.5 1.1E-13 2.4E-18 118.6 9.4 80 287-378 1-84 (85)
102 cd04088 EFG_mtEFG_II EFG_mtEFG 99.5 1.9E-13 4E-18 117.1 9.7 81 285-377 1-82 (83)
103 cd04171 SelB SelB subfamily. 99.5 4.2E-14 9E-19 136.8 6.1 106 21-154 2-115 (164)
104 cd04091 mtEFG1_II_like mtEFG1_ 99.5 3.3E-13 7.1E-18 114.9 10.0 80 285-378 1-81 (81)
105 cd01693 mtEFG2_like_IV mtEF-G2 99.4 3.4E-13 7.3E-18 124.0 9.1 67 562-631 54-120 (120)
106 KOG0463 GTP-binding protein GP 99.4 1.6E-13 3.5E-18 141.5 7.6 293 20-392 134-465 (641)
107 cd03691 BipA_TypA_II BipA_TypA 99.4 1E-12 2.3E-17 113.2 11.0 84 285-377 1-85 (86)
108 cd03699 lepA_II lepA_II: This 99.3 4.5E-12 9.8E-17 109.1 9.5 81 285-378 1-86 (86)
109 KOG1143 Predicted translation 99.3 3.5E-12 7.6E-17 131.7 7.5 278 20-364 168-472 (591)
110 KOG1144 Translation initiation 99.3 3E-12 6.5E-17 142.0 6.2 119 21-155 477-604 (1064)
111 COG1159 Era GTPase [General fu 99.3 4.5E-12 9.8E-17 129.8 6.3 105 19-154 6-125 (298)
112 KOG0052 Translation elongation 99.2 3.2E-13 6.8E-18 142.6 -3.5 120 16-154 4-153 (391)
113 cd01887 IF2_eIF5B IF2/eIF5B (i 99.2 7E-12 1.5E-16 121.8 6.1 105 21-154 2-113 (168)
114 COG1160 Predicted GTPases [Gen 99.2 1.4E-11 3.1E-16 133.0 8.1 104 20-154 4-123 (444)
115 cd04160 Arfrp1 Arfrp1 subfamil 99.2 3.2E-11 6.8E-16 117.2 6.5 106 21-154 1-118 (167)
116 cd01894 EngA1 EngA1 subfamily. 99.2 1.8E-11 3.8E-16 117.3 4.4 101 23-154 1-116 (157)
117 PRK00093 GTP-binding protein D 99.2 3E-11 6.6E-16 136.4 6.5 107 18-155 172-296 (435)
118 cd01895 EngA2 EngA2 subfamily. 99.1 1.1E-10 2.5E-15 113.4 6.8 105 19-154 2-124 (174)
119 TIGR03594 GTPase_EngA ribosome 99.1 6.5E-11 1.4E-15 133.5 5.4 102 22-154 2-118 (429)
120 TIGR03594 GTPase_EngA ribosome 99.1 9.8E-11 2.1E-15 132.0 6.5 106 19-155 172-295 (429)
121 cd01864 Rab19 Rab19 subfamily. 99.1 9.6E-11 2.1E-15 113.8 4.9 107 18-154 2-119 (165)
122 PRK03003 GTP-binding protein D 99.1 1.9E-10 4E-15 130.8 7.2 118 6-154 24-157 (472)
123 cd01879 FeoB Ferrous iron tran 99.1 1.2E-10 2.6E-15 111.8 4.4 99 24-154 1-112 (158)
124 PRK00093 GTP-binding protein D 99.0 1.5E-10 3.2E-15 130.8 5.9 104 20-154 2-120 (435)
125 COG1160 Predicted GTPases [Gen 99.0 1.4E-10 3E-15 125.5 4.9 105 19-154 178-300 (444)
126 cd01898 Obg Obg subfamily. Th 99.0 3E-10 6.5E-15 110.6 6.7 102 21-154 2-125 (170)
127 TIGR00436 era GTP-binding prot 99.0 1.8E-10 3.8E-15 121.5 5.4 103 21-154 2-118 (270)
128 cd04114 Rab30 Rab30 subfamily. 99.0 3.2E-10 6.9E-15 110.4 6.4 110 13-154 1-123 (169)
129 cd04164 trmE TrmE (MnmE, ThdF, 99.0 2.4E-10 5.2E-15 109.3 5.3 103 21-154 3-118 (157)
130 PRK15494 era GTPase Era; Provi 99.0 3.1E-10 6.6E-15 123.3 6.6 106 18-154 51-171 (339)
131 PRK09554 feoB ferrous iron tra 99.0 3.8E-10 8.3E-15 133.8 7.1 105 19-155 3-124 (772)
132 PF02421 FeoB_N: Ferrous iron 99.0 3.1E-10 6.8E-15 108.1 4.3 102 21-154 2-116 (156)
133 cd04145 M_R_Ras_like M-Ras/R-R 99.0 8.4E-10 1.8E-14 106.7 7.3 103 20-154 3-118 (164)
134 COG2229 Predicted GTPase [Gene 99.0 5.4E-10 1.2E-14 106.4 5.4 114 20-154 11-132 (187)
135 PRK09518 bifunctional cytidyla 99.0 5.3E-10 1.2E-14 133.1 6.5 107 17-154 273-394 (712)
136 PF10662 PduV-EutP: Ethanolami 99.0 2.1E-10 4.5E-15 106.9 1.9 91 20-154 2-100 (143)
137 PRK03003 GTP-binding protein D 99.0 6.5E-10 1.4E-14 126.4 6.1 107 18-155 210-334 (472)
138 TIGR00231 small_GTP small GTP- 98.9 2.1E-10 4.6E-15 109.0 1.7 104 20-154 2-119 (161)
139 cd04157 Arl6 Arl6 subfamily. 98.9 6.6E-10 1.4E-14 107.2 5.0 101 21-154 1-115 (162)
140 cd04113 Rab4 Rab4 subfamily. 98.9 8.3E-10 1.8E-14 106.6 4.9 104 21-154 2-116 (161)
141 PRK15467 ethanolamine utilizat 98.9 7.8E-10 1.7E-14 106.9 4.7 92 20-154 2-102 (158)
142 PRK00089 era GTPase Era; Revie 98.9 9.2E-10 2E-14 117.6 5.5 106 18-154 4-124 (292)
143 cd04124 RabL2 RabL2 subfamily. 98.9 1.4E-09 3E-14 105.3 6.1 104 21-154 2-115 (161)
144 smart00175 RAB Rab subfamily o 98.9 1.2E-09 2.6E-14 105.5 5.4 104 21-154 2-116 (164)
145 cd04115 Rab33B_Rab33A Rab33B/R 98.9 9.9E-10 2.1E-14 107.4 4.7 107 18-154 1-120 (170)
146 cd04151 Arl1 Arl1 subfamily. 98.9 1.7E-09 3.7E-14 104.2 6.3 99 21-154 1-111 (158)
147 PRK09518 bifunctional cytidyla 98.9 1.2E-09 2.6E-14 130.1 6.0 106 18-154 449-572 (712)
148 cd01861 Rab6 Rab6 subfamily. 98.9 1.5E-09 3.2E-14 104.7 5.4 105 20-154 1-116 (161)
149 cd00879 Sar1 Sar1 subfamily. 98.9 1.7E-09 3.7E-14 107.6 5.9 111 9-154 9-131 (190)
150 cd04105 SR_beta Signal recogni 98.9 2.3E-09 4.9E-14 108.1 6.9 104 20-154 1-120 (203)
151 smart00178 SAR Sar1p-like memb 98.9 3E-09 6.6E-14 105.5 7.4 112 8-154 6-129 (184)
152 cd01882 BMS1 Bms1. Bms1 is an 98.9 1.8E-09 3.8E-14 110.7 5.7 100 17-154 37-144 (225)
153 cd04137 RheB Rheb (Ras Homolog 98.9 2.5E-09 5.5E-14 105.4 6.4 104 20-154 2-117 (180)
154 cd01897 NOG NOG1 is a nucleola 98.9 2.4E-09 5.1E-14 104.1 6.0 103 20-154 1-124 (168)
155 cd00878 Arf_Arl Arf (ADP-ribos 98.9 2.4E-09 5.2E-14 103.0 5.7 99 21-154 1-111 (158)
156 cd04159 Arl10_like Arl10-like 98.9 2.8E-09 6.2E-14 101.7 6.2 99 22-154 2-112 (159)
157 cd01862 Rab7 Rab7 subfamily. 98.9 2.8E-09 6.2E-14 103.8 6.2 102 21-154 2-120 (172)
158 cd00154 Rab Rab family. Rab G 98.9 2.5E-09 5.4E-14 102.0 5.5 104 21-154 2-116 (159)
159 PF01926 MMR_HSR1: 50S ribosom 98.9 2.1E-09 4.6E-14 98.0 4.6 82 22-134 2-92 (116)
160 cd01866 Rab2 Rab2 subfamily. 98.9 3.1E-09 6.8E-14 103.6 6.1 106 19-154 4-120 (168)
161 cd04154 Arl2 Arl2 subfamily. 98.8 3.9E-09 8.5E-14 103.4 6.5 102 18-154 13-126 (173)
162 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.8 5E-09 1.1E-13 102.9 7.2 110 9-154 6-127 (174)
163 cd01878 HflX HflX subfamily. 98.8 3.1E-09 6.8E-14 107.1 5.7 107 17-154 39-164 (204)
164 smart00173 RAS Ras subfamily o 98.8 4.9E-09 1.1E-13 101.4 6.9 102 21-154 2-116 (164)
165 cd04163 Era Era subfamily. Er 98.8 5E-09 1.1E-13 100.8 6.5 105 19-154 3-122 (168)
166 TIGR00450 mnmE_trmE_thdF tRNA 98.8 4.7E-09 1E-13 117.6 6.2 106 19-155 203-322 (442)
167 TIGR02528 EutP ethanolamine ut 98.8 3.2E-09 6.9E-14 100.3 4.1 90 21-154 2-99 (142)
168 PRK05291 trmE tRNA modificatio 98.8 5E-09 1.1E-13 118.1 6.3 105 20-155 216-333 (449)
169 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.8 5.7E-09 1.2E-13 103.4 5.9 104 21-154 5-120 (183)
170 cd01863 Rab18 Rab18 subfamily. 98.8 3.5E-09 7.5E-14 102.2 4.3 104 21-154 2-117 (161)
171 cd00880 Era_like Era (E. coli 98.8 4.1E-09 8.9E-14 100.2 4.7 101 24-154 1-115 (163)
172 cd04147 Ras_dva Ras-dva subfam 98.8 3.7E-09 8E-14 106.2 4.5 102 21-154 1-115 (198)
173 TIGR03598 GTPase_YsxC ribosome 98.8 4.7E-09 1E-13 103.6 5.1 105 17-154 16-140 (179)
174 cd04106 Rab23_lke Rab23-like s 98.8 7.8E-09 1.7E-13 99.7 6.3 106 21-154 2-117 (162)
175 cd01860 Rab5_related Rab5-rela 98.8 5E-09 1.1E-13 101.2 4.8 104 21-154 3-117 (163)
176 cd04155 Arl3 Arl3 subfamily. 98.8 9.6E-09 2.1E-13 100.4 6.6 103 17-154 12-126 (173)
177 cd04161 Arl2l1_Arl13_like Arl2 98.8 7.8E-09 1.7E-13 100.8 5.6 99 21-154 1-111 (167)
178 cd04162 Arl9_Arfrp2_like Arl9/ 98.8 1.2E-08 2.5E-13 99.3 6.6 99 22-154 2-110 (164)
179 cd04139 RalA_RalB RalA/RalB su 98.8 1.6E-08 3.4E-13 97.6 7.4 103 21-154 2-116 (164)
180 cd01893 Miro1 Miro1 subfamily. 98.8 1.5E-08 3.2E-13 98.6 7.2 102 21-154 2-114 (166)
181 cd00877 Ran Ran (Ras-related n 98.8 1.4E-08 2.9E-13 99.0 6.8 104 21-154 2-115 (166)
182 cd04119 RJL RJL (RabJ-Like) su 98.7 9.6E-09 2.1E-13 99.4 5.1 104 21-154 2-121 (168)
183 cd04123 Rab21 Rab21 subfamily. 98.7 9E-09 2E-13 99.0 4.9 104 21-154 2-116 (162)
184 cd04146 RERG_RasL11_like RERG/ 98.7 1E-08 2.2E-13 99.5 5.3 103 21-154 1-117 (165)
185 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.7 1.7E-08 3.7E-13 98.0 6.6 106 19-154 2-118 (166)
186 cd00876 Ras Ras family. The R 98.7 7.9E-09 1.7E-13 99.2 4.2 103 21-154 1-115 (160)
187 cd04177 RSR1 RSR1 subgroup. R 98.7 1.8E-08 3.8E-13 98.2 6.2 102 21-154 3-117 (168)
188 cd04138 H_N_K_Ras_like H-Ras/N 98.7 2.1E-08 4.6E-13 96.3 6.6 102 21-154 3-117 (162)
189 cd01867 Rab8_Rab10_Rab13_like 98.7 1.1E-08 2.5E-13 99.5 4.7 106 19-154 3-119 (167)
190 cd04175 Rap1 Rap1 subgroup. T 98.7 2.3E-08 4.9E-13 96.9 6.8 102 21-154 3-117 (164)
191 PLN03118 Rab family protein; P 98.7 1.5E-08 3.3E-13 102.8 5.5 105 19-154 14-131 (211)
192 PTZ00369 Ras-like protein; Pro 98.7 1.5E-08 3.2E-13 101.0 5.0 104 19-154 5-121 (189)
193 cd01852 AIG1 AIG1 (avrRpt2-ind 98.7 5.2E-08 1.1E-12 97.7 8.9 84 20-133 1-95 (196)
194 cd04156 ARLTS1 ARLTS1 subfamil 98.7 2.1E-08 4.6E-13 96.5 5.8 99 22-154 2-112 (160)
195 cd04158 ARD1 ARD1 subfamily. 98.7 2.1E-08 4.6E-13 97.9 5.6 99 21-154 1-111 (169)
196 PRK00454 engB GTP-binding prot 98.7 1.5E-08 3.2E-13 101.2 4.5 106 16-154 21-146 (196)
197 cd00882 Ras_like_GTPase Ras-li 98.7 1.2E-08 2.5E-13 95.8 3.4 101 24-154 1-113 (157)
198 cd04112 Rab26 Rab26 subfamily. 98.7 2E-08 4.3E-13 100.3 5.1 103 21-154 2-117 (191)
199 cd04122 Rab14 Rab14 subfamily. 98.6 3.2E-08 6.9E-13 96.2 5.6 103 20-154 3-118 (166)
200 cd01881 Obg_like The Obg-like 98.6 2.6E-08 5.6E-13 97.4 4.7 100 24-154 1-131 (176)
201 TIGR03156 GTP_HflX GTP-binding 98.6 4.5E-08 9.8E-13 106.7 6.8 106 18-154 188-312 (351)
202 cd04149 Arf6 Arf6 subfamily. 98.6 4E-08 8.7E-13 95.9 5.8 101 19-154 9-121 (168)
203 cd04136 Rap_like Rap-like subf 98.6 4.6E-08 1E-12 94.4 6.1 102 21-154 3-117 (163)
204 cd04140 ARHI_like ARHI subfami 98.6 3.9E-08 8.5E-13 95.5 5.5 102 21-154 3-119 (165)
205 PF03144 GTP_EFTU_D2: Elongati 98.6 4.1E-08 8.8E-13 81.9 4.6 71 302-377 3-74 (74)
206 cd01868 Rab11_like Rab11-like. 98.6 4.7E-08 1E-12 94.7 5.7 106 19-154 3-119 (165)
207 cd00157 Rho Rho (Ras homology) 98.6 3E-08 6.6E-13 96.5 4.2 103 21-154 2-115 (171)
208 cd04101 RabL4 RabL4 (Rab-like4 98.6 7.8E-08 1.7E-12 93.0 6.9 107 21-154 2-118 (164)
209 cd01865 Rab3 Rab3 subfamily. 98.6 5.1E-08 1.1E-12 94.7 5.4 105 20-154 2-117 (165)
210 cd04110 Rab35 Rab35 subfamily. 98.6 5.5E-08 1.2E-12 97.7 5.7 105 18-154 5-121 (199)
211 PRK04213 GTP-binding protein; 98.6 6.7E-08 1.5E-12 97.1 6.4 102 17-154 7-141 (201)
212 cd04142 RRP22 RRP22 subfamily. 98.6 6.4E-08 1.4E-12 97.2 5.9 104 21-154 2-127 (198)
213 cd04135 Tc10 TC10 subfamily. 98.6 2.7E-08 5.8E-13 97.3 3.0 102 21-154 2-115 (174)
214 cd04116 Rab9 Rab9 subfamily. 98.6 5.9E-08 1.3E-12 94.6 5.4 107 18-154 4-125 (170)
215 PRK12298 obgE GTPase CgtA; Rev 98.6 8.4E-08 1.8E-12 105.8 7.2 106 18-154 158-286 (390)
216 COG1084 Predicted GTPase [Gene 98.6 1.1E-07 2.3E-12 98.8 7.2 115 8-154 157-291 (346)
217 PRK11058 GTPase HflX; Provisio 98.6 5.7E-08 1.2E-12 108.3 5.4 105 19-154 197-320 (426)
218 KOG1423 Ras-like GTPase ERA [C 98.5 1.4E-07 2.9E-12 96.5 7.1 107 17-154 70-196 (379)
219 PLN00223 ADP-ribosylation fact 98.5 1.2E-07 2.6E-12 93.8 6.7 103 17-154 15-129 (181)
220 cd04150 Arf1_5_like Arf1-Arf5- 98.5 1E-07 2.2E-12 92.1 6.0 99 21-154 2-112 (159)
221 cd04144 Ras2 Ras2 subfamily. 98.5 1.5E-07 3.3E-12 93.8 7.4 101 22-154 2-117 (190)
222 cd04132 Rho4_like Rho4-like su 98.5 1.7E-07 3.8E-12 92.9 7.7 103 21-154 2-116 (187)
223 COG0218 Predicted GTPase [Gene 98.5 5.2E-08 1.1E-12 95.1 3.7 104 17-154 22-146 (200)
224 smart00177 ARF ARF-like small 98.5 1.4E-07 3E-12 92.8 6.7 101 19-154 13-125 (175)
225 cd04176 Rap2 Rap2 subgroup. T 98.5 1.3E-07 2.9E-12 91.4 6.3 102 21-154 3-117 (163)
226 cd04107 Rab32_Rab38 Rab38/Rab3 98.5 7.1E-08 1.5E-12 97.1 4.3 103 21-154 2-121 (201)
227 COG0486 ThdF Predicted GTPase 98.5 1.1E-07 2.4E-12 103.5 6.0 104 20-154 218-335 (454)
228 PF08477 Miro: Miro-like prote 98.5 3.1E-08 6.7E-13 90.5 1.4 87 22-136 2-88 (119)
229 PLN03110 Rab GTPase; Provision 98.5 1.5E-07 3.2E-12 95.9 6.1 108 17-154 10-128 (216)
230 cd04118 Rab24 Rab24 subfamily. 98.5 1.8E-07 4E-12 93.3 6.7 105 21-154 2-116 (193)
231 PF09439 SRPRB: Signal recogni 98.5 4E-08 8.6E-13 95.9 1.7 104 18-154 2-123 (181)
232 PRK12299 obgE GTPase CgtA; Rev 98.5 2.1E-07 4.5E-12 100.7 7.4 107 17-154 156-282 (335)
233 cd04127 Rab27A Rab27a subfamil 98.5 2.1E-07 4.5E-12 91.6 6.5 117 18-154 3-131 (180)
234 PTZ00133 ADP-ribosylation fact 98.5 2.1E-07 4.6E-12 92.1 6.5 101 19-154 17-129 (182)
235 TIGR02729 Obg_CgtA Obg family 98.5 2.3E-07 5E-12 100.2 7.3 107 17-154 155-284 (329)
236 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.5 2.4E-07 5.2E-12 90.8 6.6 102 21-154 4-118 (172)
237 smart00174 RHO Rho (Ras homolo 98.5 2.3E-07 4.9E-12 90.8 6.4 101 22-154 1-113 (174)
238 TIGR00437 feoB ferrous iron tr 98.5 1.2E-07 2.6E-12 110.2 5.1 97 26-154 1-110 (591)
239 cd04126 Rab20 Rab20 subfamily. 98.5 1.9E-07 4.2E-12 95.1 6.0 99 21-154 2-111 (220)
240 cd04108 Rab36_Rab34 Rab34/Rab3 98.5 2.6E-07 5.7E-12 90.3 6.5 104 21-154 2-117 (170)
241 PLN03108 Rab family protein; P 98.5 2.1E-07 4.6E-12 94.3 6.0 106 17-154 4-122 (210)
242 cd01876 YihA_EngB The YihA (En 98.5 1.8E-07 4E-12 90.1 5.3 100 22-154 2-121 (170)
243 PLN03071 GTP-binding nuclear p 98.5 2.5E-07 5.3E-12 94.5 6.4 107 18-154 12-128 (219)
244 smart00176 RAN Ran (Ras-relate 98.4 2.3E-07 4.9E-12 93.3 5.5 100 25-154 1-110 (200)
245 cd04120 Rab12 Rab12 subfamily. 98.4 1.9E-07 4E-12 94.0 4.7 102 21-154 2-116 (202)
246 PRK12296 obgE GTPase CgtA; Rev 98.4 3E-07 6.5E-12 103.3 6.6 106 17-154 157-295 (500)
247 cd01870 RhoA_like RhoA-like su 98.4 3.6E-07 7.9E-12 89.4 6.0 103 20-154 2-116 (175)
248 cd01892 Miro2 Miro2 subfamily. 98.4 5.7E-07 1.2E-11 87.8 7.4 106 17-154 2-119 (169)
249 cd01850 CDC_Septin CDC/Septin. 98.4 1.8E-07 4E-12 98.7 4.1 114 20-154 5-154 (276)
250 cd04111 Rab39 Rab39 subfamily. 98.4 2.5E-07 5.3E-12 94.0 4.6 87 20-135 3-89 (211)
251 cd04125 RabA_like RabA-like su 98.4 2.8E-07 6E-12 91.6 4.4 104 21-154 2-116 (188)
252 PRK12297 obgE GTPase CgtA; Rev 98.4 6E-07 1.3E-11 99.7 7.4 106 18-154 157-285 (424)
253 cd01874 Cdc42 Cdc42 subfamily. 98.4 7.2E-07 1.6E-11 87.7 6.8 103 20-154 2-116 (175)
254 cd04109 Rab28 Rab28 subfamily. 98.4 5.2E-07 1.1E-11 91.9 6.0 103 21-154 2-120 (215)
255 cd03698 eRF3_II_like eRF3_II_l 98.4 3.1E-06 6.8E-11 72.2 9.8 79 284-377 1-82 (83)
256 cd04143 Rhes_like Rhes_like su 98.3 7.7E-07 1.7E-11 92.4 7.1 102 21-154 2-124 (247)
257 cd04121 Rab40 Rab40 subfamily. 98.3 6.2E-07 1.3E-11 89.3 5.8 108 17-154 4-121 (189)
258 cd03693 EF1_alpha_II EF1_alpha 98.3 3.1E-06 6.8E-11 73.6 9.5 85 282-380 2-89 (91)
259 KOG1191 Mitochondrial GTPase [ 98.3 9.2E-07 2E-11 96.1 6.8 93 13-136 262-363 (531)
260 PTZ00132 GTP-binding nuclear p 98.3 1.5E-06 3.3E-11 88.4 7.1 106 19-154 9-124 (215)
261 cd04130 Wrch_1 Wrch-1 subfamil 98.3 9.9E-07 2.2E-11 86.3 5.4 102 21-154 2-115 (173)
262 cd04134 Rho3 Rho3 subfamily. 98.3 9.7E-07 2.1E-11 87.9 5.2 103 20-154 1-115 (189)
263 cd01871 Rac1_like Rac1-like su 98.3 1.4E-06 2.9E-11 85.7 6.1 102 21-154 3-116 (174)
264 cd01342 Translation_Factor_II_ 98.2 5.9E-06 1.3E-10 69.3 9.0 78 285-374 1-78 (83)
265 cd01896 DRG The developmentall 98.2 4.4E-06 9.4E-11 86.1 9.6 83 21-135 2-91 (233)
266 cd04148 RGK RGK subfamily. Th 98.2 1.7E-06 3.7E-11 88.5 6.5 101 21-154 2-117 (221)
267 cd01853 Toc34_like Toc34-like 98.2 6.9E-06 1.5E-10 85.2 10.6 70 12-112 24-93 (249)
268 cd04117 Rab15 Rab15 subfamily. 98.2 2.5E-06 5.3E-11 82.6 6.1 102 21-154 2-116 (161)
269 cd04104 p47_IIGP_like p47 (47- 98.1 1.4E-06 3E-11 87.5 3.2 106 21-154 3-118 (197)
270 cd01875 RhoG RhoG subfamily. 98.1 4.7E-06 1E-10 83.1 6.5 104 20-154 4-118 (191)
271 smart00053 DYNc Dynamin, GTPas 98.1 3.8E-06 8.2E-11 86.3 5.1 57 98-154 125-203 (240)
272 cd04089 eRF3_II eRF3_II: domai 98.1 2.9E-05 6.4E-10 66.1 9.8 75 284-374 1-77 (82)
273 PF00025 Arf: ADP-ribosylation 98.1 1E-06 2.2E-11 86.7 0.7 103 17-154 12-126 (175)
274 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.1 5.2E-06 1.1E-10 84.7 5.9 103 20-154 2-116 (222)
275 cd04102 RabL3 RabL3 (Rab-like3 98.1 6.9E-06 1.5E-10 82.6 6.6 89 21-136 2-92 (202)
276 cd04133 Rop_like Rop subfamily 98.0 6E-06 1.3E-10 81.3 5.8 104 20-154 2-116 (176)
277 cd04131 Rnd Rnd subfamily. Th 98.0 6.8E-06 1.5E-10 81.0 6.2 102 21-154 3-116 (178)
278 cd04128 Spg1 Spg1p. Spg1p (se 98.0 4.5E-06 9.8E-11 82.6 4.6 83 21-135 2-86 (182)
279 COG0370 FeoB Fe2+ transport sy 98.0 7.8E-06 1.7E-10 93.0 6.8 103 20-154 4-119 (653)
280 PRK09866 hypothetical protein; 98.0 3.4E-06 7.4E-11 95.5 3.9 60 97-156 229-302 (741)
281 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.0 1.3E-05 2.9E-10 79.3 7.5 104 19-154 5-120 (182)
282 TIGR00991 3a0901s02IAP34 GTP-b 98.0 3.4E-05 7.4E-10 81.4 9.9 82 17-129 36-126 (313)
283 PF00071 Ras: Ras family; Int 98.0 1.3E-05 2.7E-10 77.3 6.1 85 22-136 2-86 (162)
284 cd04129 Rho2 Rho2 subfamily. 98.0 1.3E-05 2.9E-10 79.6 6.4 103 20-154 2-116 (187)
285 PLN00023 GTP-binding protein; 97.9 1.1E-05 2.5E-10 85.5 5.5 99 19-134 21-119 (334)
286 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 97.9 1.8E-05 3.9E-10 81.2 6.7 103 21-154 15-128 (232)
287 PF00350 Dynamin_N: Dynamin fa 97.9 3.8E-06 8.3E-11 81.7 1.3 40 97-136 100-143 (168)
288 PTZ00258 GTP-binding protein; 97.9 4E-05 8.8E-10 84.0 8.9 106 13-134 15-128 (390)
289 cd03694 GTPBP_II Domain II of 97.8 0.00012 2.5E-09 63.2 9.6 80 285-374 1-82 (87)
290 cd01900 YchF YchF subfamily. 97.8 3.3E-05 7.1E-10 81.0 7.4 97 22-134 1-105 (274)
291 PF03193 DUF258: Protein of un 97.8 1.4E-05 3.1E-10 76.4 3.8 35 7-42 24-58 (161)
292 PF04548 AIG1: AIG1 family; I 97.8 6E-05 1.3E-09 76.5 8.1 83 20-132 1-94 (212)
293 PRK14722 flhF flagellar biosyn 97.8 1.8E-05 4E-10 86.1 4.4 109 18-136 136-260 (374)
294 cd03697 EFTU_II EFTU_II: Elong 97.8 9.6E-05 2.1E-09 63.7 8.0 82 285-378 1-85 (87)
295 TIGR02836 spore_IV_A stage IV 97.8 2.8E-05 6.1E-10 83.9 5.6 132 10-154 8-191 (492)
296 COG4917 EutP Ethanolamine util 97.8 5.3E-06 1.2E-10 74.0 -0.2 92 20-154 2-101 (148)
297 cd03696 selB_II selB_II: this 97.7 0.00016 3.5E-09 61.6 8.8 66 285-364 1-66 (83)
298 PRK09601 GTP-binding protein Y 97.7 8E-05 1.7E-09 80.7 8.5 99 20-134 3-109 (364)
299 COG1100 GTPase SAR1 and relate 97.7 5.4E-05 1.2E-09 76.9 6.4 105 20-154 6-122 (219)
300 cd03695 CysN_NodQ_II CysN_NodQ 97.7 0.00027 5.9E-09 59.9 9.4 66 285-364 1-66 (81)
301 COG2262 HflX GTPases [General 97.7 8.8E-05 1.9E-09 79.8 7.4 107 17-154 190-315 (411)
302 COG5192 BMS1 GTP-binding prote 97.7 5.7E-05 1.2E-09 82.7 5.9 98 19-154 69-174 (1077)
303 PRK09435 membrane ATPase/prote 97.6 6.2E-05 1.3E-09 81.0 5.1 58 96-156 147-207 (332)
304 PRK13768 GTPase; Provisional 97.6 7.1E-05 1.5E-09 78.1 5.4 57 98-154 97-173 (253)
305 KOG0090 Signal recognition par 97.6 2.6E-05 5.6E-10 76.3 1.8 103 17-154 36-156 (238)
306 KOG1489 Predicted GTP-binding 97.6 6.8E-05 1.5E-09 77.6 4.8 107 17-154 194-323 (366)
307 cd04103 Centaurin_gamma Centau 97.6 0.00012 2.7E-09 70.5 6.1 97 21-154 2-110 (158)
308 cd03688 eIF2_gamma_II eIF2_gam 97.5 0.00087 1.9E-08 59.3 10.5 89 281-374 2-102 (113)
309 COG1163 DRG Predicted GTPase [ 97.5 0.00011 2.3E-09 76.6 5.3 86 19-136 63-155 (365)
310 PF04670 Gtr1_RagA: Gtr1/RagA 97.5 3.9E-05 8.5E-10 78.3 2.0 103 22-154 2-122 (232)
311 PRK10416 signal recognition pa 97.5 0.00013 2.8E-09 78.5 5.9 130 18-156 113-272 (318)
312 cd01858 NGP_1 NGP-1. Autoanti 97.5 0.00019 4.1E-09 69.1 6.3 25 19-43 102-126 (157)
313 PRK09602 translation-associate 97.5 0.00031 6.7E-09 77.9 8.7 38 97-134 71-115 (396)
314 TIGR00064 ftsY signal recognit 97.5 0.00014 3E-09 76.6 5.5 128 18-156 71-230 (272)
315 cd01899 Ygr210 Ygr210 subfamil 97.5 0.00032 7E-09 75.4 8.1 38 97-134 68-112 (318)
316 KOG0073 GTP-binding ADP-ribosy 97.5 0.00045 9.8E-09 64.9 7.9 103 17-154 14-128 (185)
317 KOG1547 Septin CDC10 and relat 97.4 0.00013 2.8E-09 72.5 4.4 75 19-114 46-120 (336)
318 TIGR00073 hypB hydrogenase acc 97.4 5.9E-05 1.3E-09 76.3 1.6 131 16-154 19-159 (207)
319 PF03029 ATP_bind_1: Conserved 97.4 2.1E-05 4.6E-10 81.0 -2.0 56 99-154 92-167 (238)
320 TIGR00993 3a0901s04IAP86 chlor 97.4 0.00066 1.4E-08 77.7 9.4 26 18-43 117-142 (763)
321 TIGR00750 lao LAO/AO transport 97.3 0.00032 7E-09 75.1 6.5 58 96-156 125-185 (300)
322 cd04178 Nucleostemin_like Nucl 97.3 0.00036 7.7E-09 68.3 6.0 23 20-42 118-140 (172)
323 TIGR01425 SRP54_euk signal rec 97.3 0.0005 1.1E-08 76.2 7.6 131 19-156 100-252 (429)
324 KOG0084 GTPase Rab1/YPT1, smal 97.3 0.00037 8E-09 67.6 5.4 107 18-154 8-125 (205)
325 PRK00771 signal recognition pa 97.3 0.00034 7.5E-09 78.1 5.6 132 18-156 94-245 (437)
326 cd01849 YlqF_related_GTPase Yl 97.3 0.00042 9.2E-09 66.6 5.6 27 17-43 98-124 (155)
327 cd01851 GBP Guanylate-binding 97.2 0.00048 1E-08 70.5 6.2 91 17-133 5-103 (224)
328 COG3596 Predicted GTPase [Gene 97.2 0.0011 2.5E-08 67.8 8.6 106 17-154 37-159 (296)
329 cd01873 RhoBTB RhoBTB subfamil 97.2 0.00039 8.4E-09 69.6 5.2 58 95-154 63-131 (195)
330 cd03114 ArgK-like The function 97.2 0.00014 3.1E-09 69.3 1.6 36 96-134 90-125 (148)
331 COG5019 CDC3 Septin family pro 97.1 0.0005 1.1E-08 73.1 5.2 76 18-114 22-98 (373)
332 KOG0080 GTPase Rab18, small G 97.1 0.00075 1.6E-08 63.0 5.4 106 17-154 9-128 (209)
333 cd01855 YqeH YqeH. YqeH is an 97.1 0.00071 1.5E-08 67.3 5.5 26 18-43 126-151 (190)
334 PF00735 Septin: Septin; Inte 97.1 0.00054 1.2E-08 72.4 4.7 73 20-112 5-77 (281)
335 PRK12727 flagellar biosynthesi 97.1 0.00058 1.2E-08 77.0 4.9 132 18-154 349-495 (559)
336 KOG0078 GTP-binding protein SE 97.1 0.0011 2.5E-08 65.1 6.3 110 15-154 8-128 (207)
337 cd03115 SRP The signal recogni 97.1 0.00043 9.4E-09 67.7 3.5 58 96-154 81-150 (173)
338 PRK11889 flhF flagellar biosyn 97.0 0.0013 2.8E-08 71.5 7.3 134 18-157 240-391 (436)
339 PF00448 SRP54: SRP54-type pro 97.0 0.00026 5.7E-09 70.8 1.8 133 20-155 2-152 (196)
340 PF05049 IIGP: Interferon-indu 97.0 0.00024 5.1E-09 77.2 1.4 119 8-154 23-152 (376)
341 PRK14974 cell division protein 97.0 0.0008 1.7E-08 72.7 5.4 134 18-158 139-294 (336)
342 TIGR00157 ribosome small subun 97.0 0.00078 1.7E-08 69.9 5.2 23 20-42 121-143 (245)
343 cd01854 YjeQ_engC YjeQ/EngC. 97.0 0.00078 1.7E-08 71.7 5.0 23 20-42 162-184 (287)
344 PRK12288 GTPase RsgA; Reviewed 97.0 0.00051 1.1E-08 74.7 3.6 22 21-42 207-228 (347)
345 PRK10867 signal recognition pa 96.9 0.0013 2.9E-08 73.3 6.4 133 19-156 100-253 (433)
346 cd01857 HSR1_MMR1 HSR1/MMR1. 96.9 0.0014 3E-08 61.9 4.9 21 21-41 85-105 (141)
347 cd03692 mtIF2_IVc mtIF2_IVc: t 96.8 0.0094 2E-07 50.9 9.5 72 287-369 3-76 (84)
348 PRK12289 GTPase RsgA; Reviewed 96.8 0.0019 4.2E-08 70.4 6.0 22 21-42 174-195 (352)
349 KOG0098 GTPase Rab2, small G p 96.8 0.0028 6E-08 61.0 6.2 104 21-154 8-122 (216)
350 KOG2655 Septin family protein 96.8 0.0017 3.6E-08 69.7 5.1 74 20-114 22-95 (366)
351 TIGR00959 ffh signal recogniti 96.7 0.0011 2.4E-08 73.9 3.8 132 19-155 99-251 (428)
352 cd03112 CobW_like The function 96.7 0.0014 2.9E-08 63.3 3.7 113 21-136 2-133 (158)
353 cd01859 MJ1464 MJ1464. This f 96.7 0.0032 7E-08 60.4 6.3 25 16-40 98-122 (156)
354 PRK12724 flagellar biosynthesi 96.7 0.0015 3.2E-08 72.0 4.0 128 20-156 224-372 (432)
355 KOG0070 GTP-binding ADP-ribosy 96.6 0.0014 3E-08 63.2 3.0 103 17-154 15-129 (181)
356 PRK13796 GTPase YqeH; Provisio 96.6 0.0033 7.1E-08 69.3 6.4 25 19-43 160-184 (365)
357 TIGR03597 GTPase_YqeH ribosome 96.6 0.0037 7.9E-08 68.8 6.5 25 20-44 155-179 (360)
358 KOG0095 GTPase Rab30, small G 96.6 0.006 1.3E-07 56.2 6.7 90 17-136 5-94 (213)
359 PRK12723 flagellar biosynthesi 96.6 0.0037 8E-08 68.9 6.4 136 18-156 173-325 (388)
360 TIGR03596 GTPase_YlqF ribosome 96.6 0.0049 1.1E-07 65.2 7.0 23 19-41 118-140 (276)
361 KOG0094 GTPase Rab6/YPT6/Ryh1, 96.5 0.009 1.9E-07 58.0 7.7 89 16-134 19-107 (221)
362 PRK09563 rbgA GTPase YlqF; Rev 96.5 0.004 8.6E-08 66.3 5.9 24 19-42 121-144 (287)
363 COG1162 Predicted GTPases [Gen 96.5 0.0036 7.7E-08 65.7 5.3 22 20-41 165-186 (301)
364 PRK05703 flhF flagellar biosyn 96.5 0.0025 5.5E-08 71.4 4.5 125 19-154 221-368 (424)
365 PRK08099 bifunctional DNA-bind 96.5 0.0019 4.1E-08 71.8 3.2 57 16-72 216-285 (399)
366 COG1161 Predicted GTPases [Gen 96.5 0.0043 9.4E-08 67.0 6.0 27 20-46 133-159 (322)
367 KOG2486 Predicted GTPase [Gene 96.4 0.0038 8.3E-08 63.9 5.0 103 20-154 137-259 (320)
368 TIGR00257 IMPACT_YIGZ uncharac 96.4 0.022 4.7E-07 56.9 10.1 112 588-705 89-200 (204)
369 KOG0076 GTP-binding ADP-ribosy 96.4 0.018 3.9E-07 54.9 8.9 118 6-154 5-137 (197)
370 cd01856 YlqF YlqF. Proteins o 96.4 0.0051 1.1E-07 60.1 5.6 23 19-41 115-137 (171)
371 KOG1534 Putative transcription 96.3 0.0078 1.7E-07 59.1 6.2 56 99-154 99-175 (273)
372 PRK12726 flagellar biosynthesi 96.3 0.0064 1.4E-07 66.1 6.2 134 17-156 204-355 (407)
373 PRK11568 hypothetical protein; 96.3 0.029 6.3E-07 56.0 10.4 112 588-705 89-200 (204)
374 KOG0077 Vesicle coat complex C 96.3 0.0075 1.6E-07 57.0 5.5 103 17-154 18-132 (193)
375 PTZ00099 rab6; Provisional 96.2 0.0019 4.2E-08 63.5 1.5 59 96-154 27-96 (176)
376 KOG1486 GTP-binding protein DR 96.2 0.003 6.4E-08 63.4 2.7 85 20-136 63-154 (364)
377 PRK14721 flhF flagellar biosyn 96.2 0.0061 1.3E-07 67.7 5.3 61 97-157 269-340 (420)
378 PRK00098 GTPase RsgA; Reviewed 96.2 0.0059 1.3E-07 65.4 4.9 22 20-41 165-186 (298)
379 cd03110 Fer4_NifH_child This p 96.1 0.0056 1.2E-07 60.2 4.3 57 96-154 91-154 (179)
380 KOG0395 Ras-related GTPase [Ge 96.1 0.0028 6.1E-08 63.4 2.2 105 19-154 3-119 (196)
381 PRK14723 flhF flagellar biosyn 96.1 0.0045 9.7E-08 73.1 3.7 130 19-156 185-336 (767)
382 KOG0086 GTPase Rab4, small G p 96.0 0.024 5.1E-07 52.6 7.3 85 20-134 10-94 (214)
383 KOG0092 GTPase Rab5/YPT51 and 96.0 0.014 2.9E-07 56.8 5.9 87 20-136 6-92 (200)
384 KOG0075 GTP-binding ADP-ribosy 96.0 0.0021 4.5E-08 59.3 0.2 100 21-154 22-133 (186)
385 KOG0448 Mitofusin 1 GTPase, in 95.9 0.015 3.3E-07 66.3 7.0 137 8-154 97-272 (749)
386 TIGR00092 GTP-binding protein 95.9 0.02 4.3E-07 62.4 7.6 99 20-134 3-110 (368)
387 TIGR00101 ureG urease accessor 95.9 0.011 2.3E-07 59.5 5.2 22 21-42 3-24 (199)
388 KOG1532 GTPase XAB1, interacts 95.9 0.0018 4E-08 65.8 -0.3 58 97-154 115-192 (366)
389 KOG0074 GTP-binding ADP-ribosy 95.9 0.062 1.3E-06 49.4 9.3 105 16-154 14-130 (185)
390 cd02042 ParA ParA and ParB of 95.8 0.021 4.5E-07 50.6 6.2 71 22-134 2-74 (104)
391 COG0536 Obg Predicted GTPase [ 95.7 0.012 2.7E-07 62.1 4.9 100 18-154 158-286 (369)
392 cd03702 IF2_mtIF2_II This fami 95.7 0.061 1.3E-06 46.9 8.3 68 287-369 3-70 (95)
393 COG0541 Ffh Signal recognition 95.7 0.012 2.5E-07 64.4 4.5 136 19-156 100-252 (451)
394 PRK06731 flhF flagellar biosyn 95.6 0.029 6.2E-07 58.9 7.2 132 19-155 75-223 (270)
395 KOG3883 Ras family small GTPas 95.6 0.025 5.4E-07 52.7 5.8 109 19-156 9-131 (198)
396 KOG0079 GTP-binding protein H- 95.6 0.034 7.3E-07 51.5 6.5 61 94-154 53-123 (198)
397 PRK06995 flhF flagellar biosyn 95.6 0.028 6.2E-07 63.5 7.3 24 19-42 256-279 (484)
398 KOG0394 Ras-related GTPase [Ge 95.4 0.037 7.9E-07 53.4 6.3 87 17-133 7-93 (210)
399 KOG0087 GTPase Rab11/YPT3, sma 95.2 0.023 4.9E-07 56.1 4.5 106 19-154 14-130 (222)
400 PRK10463 hydrogenase nickel in 95.1 0.039 8.6E-07 58.1 6.1 27 16-42 101-127 (290)
401 KOG2485 Conserved ATP/GTP bind 95.0 0.053 1.1E-06 56.8 6.6 91 18-136 142-234 (335)
402 KOG0093 GTPase Rab3, small G p 94.9 0.023 5E-07 52.5 3.4 104 21-154 23-137 (193)
403 KOG1533 Predicted GTPase [Gene 94.9 0.037 8.1E-07 55.4 4.8 58 97-154 96-174 (290)
404 PRK01889 GTPase RsgA; Reviewed 94.9 0.025 5.5E-07 62.0 4.1 27 18-44 194-220 (356)
405 PF13555 AAA_29: P-loop contai 94.6 0.036 7.7E-07 44.2 3.3 22 21-42 25-46 (62)
406 cd03701 IF2_IF5B_II IF2_IF5B_I 94.6 0.2 4.3E-06 43.8 8.3 68 287-369 3-70 (95)
407 KOG0780 Signal recognition par 94.4 0.024 5.3E-07 60.6 2.6 128 19-155 101-252 (483)
408 KOG0410 Predicted GTP binding 94.3 0.13 2.8E-06 54.0 7.4 96 19-145 178-289 (410)
409 KOG1707 Predicted Ras related/ 94.1 0.039 8.4E-07 62.1 3.4 109 17-158 8-131 (625)
410 TIGR03499 FlhF flagellar biosy 93.8 0.06 1.3E-06 57.2 4.1 26 18-43 193-218 (282)
411 KOG1954 Endocytosis/signaling 93.7 0.16 3.6E-06 54.0 6.8 36 98-133 147-193 (532)
412 KOG1490 GTP-binding protein CR 93.5 0.05 1.1E-06 60.1 2.9 105 17-154 166-292 (620)
413 PF06431 Polyoma_lg_T_C: Polyo 93.5 0.092 2E-06 56.2 4.8 39 7-45 143-181 (417)
414 PRK13849 putative crown gall t 93.5 0.08 1.7E-06 54.4 4.3 36 96-133 82-117 (231)
415 COG0012 Predicted GTPase, prob 93.5 0.23 5E-06 53.6 7.8 94 20-134 3-110 (372)
416 KOG4252 GTP-binding protein [S 93.3 0.026 5.7E-07 53.8 0.3 108 17-154 18-135 (246)
417 cd03703 aeIF5B_II aeIF5B_II: T 93.2 0.47 1E-05 42.4 8.0 74 289-370 5-87 (110)
418 PHA00729 NTP-binding motif con 93.2 0.11 2.3E-06 52.9 4.6 42 1-44 1-42 (226)
419 cd03116 MobB Molybdenum is an 93.2 0.3 6.4E-06 47.1 7.4 23 20-42 2-24 (159)
420 PRK09270 nucleoside triphospha 93.1 0.12 2.5E-06 53.2 4.8 37 7-43 21-57 (229)
421 KOG2423 Nucleolar GTPase [Gene 93.0 0.077 1.7E-06 56.9 3.3 26 17-42 305-330 (572)
422 PF13207 AAA_17: AAA domain; P 93.0 0.11 2.3E-06 47.2 3.8 24 21-44 1-24 (121)
423 COG0563 Adk Adenylate kinase a 92.9 0.097 2.1E-06 51.5 3.6 27 21-47 2-28 (178)
424 PF03308 ArgK: ArgK protein; 92.8 0.17 3.6E-06 52.2 5.3 141 7-154 17-178 (266)
425 COG0396 sufC Cysteine desulfur 92.8 0.089 1.9E-06 53.0 3.2 97 19-146 30-134 (251)
426 KOG0096 GTPase Ran/TC4/GSP1 (n 92.8 0.13 2.7E-06 50.0 4.0 107 18-154 9-125 (216)
427 PRK11537 putative GTP-binding 92.7 0.16 3.5E-06 54.8 5.3 115 18-136 3-137 (318)
428 PF03205 MobB: Molybdopterin g 92.7 0.11 2.4E-06 49.0 3.5 22 21-42 2-23 (140)
429 cd01130 VirB11-like_ATPase Typ 92.5 0.13 2.7E-06 51.0 3.9 26 17-42 23-48 (186)
430 COG4559 ABC-type hemin transpo 92.4 0.16 3.6E-06 50.5 4.4 57 20-80 28-91 (259)
431 COG1136 SalX ABC-type antimicr 92.4 0.13 2.7E-06 52.3 3.7 30 20-53 32-61 (226)
432 cd02019 NK Nucleoside/nucleoti 92.3 0.11 2.3E-06 42.5 2.6 22 21-42 1-22 (69)
433 PRK05480 uridine/cytidine kina 92.2 0.14 2.9E-06 51.8 3.8 27 17-43 4-30 (209)
434 COG1120 FepC ABC-type cobalami 92.0 0.18 3.8E-06 52.3 4.4 48 19-70 28-80 (258)
435 PRK10751 molybdopterin-guanine 92.0 0.16 3.4E-06 49.6 3.7 26 17-42 4-29 (173)
436 COG1134 TagH ABC-type polysacc 92.0 0.13 2.8E-06 52.3 3.2 25 21-48 55-79 (249)
437 cd02036 MinD Bacterial cell di 91.9 0.35 7.5E-06 47.1 6.3 34 99-134 64-97 (179)
438 COG0572 Udk Uridine kinase [Nu 91.9 0.18 3.9E-06 50.8 4.1 32 13-44 2-33 (218)
439 KOG1424 Predicted GTP-binding 91.9 0.15 3.2E-06 56.8 3.7 22 19-40 314-335 (562)
440 TIGR00235 udk uridine kinase. 91.8 0.18 3.9E-06 50.9 4.1 28 16-43 3-30 (207)
441 KOG4181 Uncharacterized conser 91.7 0.87 1.9E-05 48.3 9.0 33 7-39 176-208 (491)
442 PRK08118 topology modulation p 91.7 0.17 3.6E-06 49.3 3.6 26 20-45 2-27 (167)
443 COG0523 Putative GTPases (G3E 91.7 0.15 3.3E-06 54.9 3.6 115 20-136 2-131 (323)
444 PF13671 AAA_33: AAA domain; P 91.6 0.18 3.9E-06 47.1 3.7 23 22-44 2-24 (143)
445 PRK07261 topology modulation p 91.6 0.18 3.8E-06 49.3 3.7 24 21-44 2-25 (171)
446 PRK07667 uridine kinase; Provi 91.5 0.25 5.5E-06 49.2 4.8 37 7-43 4-41 (193)
447 cd03238 ABC_UvrA The excision 91.4 0.16 3.5E-06 49.9 3.2 24 18-41 20-43 (176)
448 COG0552 FtsY Signal recognitio 91.4 0.39 8.5E-06 51.1 6.1 131 18-155 138-296 (340)
449 TIGR03348 VI_IcmF type VI secr 91.4 0.12 2.6E-06 65.5 2.8 56 99-154 162-254 (1169)
450 TIGR01360 aden_kin_iso1 adenyl 91.3 0.2 4.4E-06 49.2 3.9 29 18-46 2-30 (188)
451 COG1763 MobB Molybdopterin-gua 91.3 0.19 4.1E-06 48.4 3.4 24 19-42 2-25 (161)
452 COG1419 FlhF Flagellar GTP-bin 91.3 0.37 8E-06 52.8 6.0 133 18-154 202-349 (407)
453 PRK08233 hypothetical protein; 91.2 0.21 4.6E-06 48.8 3.9 26 19-44 3-28 (182)
454 COG1116 TauB ABC-type nitrate/ 91.2 0.15 3.2E-06 52.1 2.7 20 20-39 30-49 (248)
455 KOG0071 GTP-binding ADP-ribosy 91.2 1 2.2E-05 41.7 7.7 79 21-134 19-97 (180)
456 COG0378 HypB Ni2+-binding GTPa 91.1 0.2 4.4E-06 49.2 3.5 25 19-43 13-37 (202)
457 cd01983 Fer4_NifH The Fer4_Nif 91.1 0.53 1.2E-05 40.1 6.0 70 22-136 2-73 (99)
458 COG3839 MalK ABC-type sugar tr 91.0 0.2 4.3E-06 54.0 3.7 42 20-65 30-76 (338)
459 PF00485 PRK: Phosphoribulokin 90.9 0.21 4.4E-06 49.9 3.5 24 21-44 1-24 (194)
460 KOG0088 GTPase Rab21, small G 90.8 0.055 1.2E-06 50.6 -0.7 84 21-134 15-98 (218)
461 COG1124 DppF ABC-type dipeptid 90.8 0.29 6.3E-06 49.8 4.3 23 19-41 33-55 (252)
462 PF05621 TniB: Bacterial TniB 90.8 0.99 2.1E-05 47.8 8.5 36 7-42 47-84 (302)
463 cd02025 PanK Pantothenate kina 90.7 0.19 4.2E-06 51.2 3.1 22 22-43 2-23 (220)
464 COG1126 GlnQ ABC-type polar am 90.5 0.21 4.5E-06 50.0 3.0 23 17-39 26-48 (240)
465 PRK06547 hypothetical protein; 90.5 0.31 6.6E-06 47.7 4.1 29 16-44 12-40 (172)
466 cd02038 FleN-like FleN is a me 90.4 0.45 9.7E-06 44.7 5.1 35 98-134 45-79 (139)
467 PRK13833 conjugal transfer pro 90.3 0.28 6E-06 52.9 4.0 32 8-42 136-167 (323)
468 PRK13900 type IV secretion sys 90.3 0.22 4.8E-06 54.0 3.2 25 18-42 159-183 (332)
469 cd01857 HSR1_MMR1 HSR1/MMR1. 90.2 0.096 2.1E-06 49.3 0.4 42 113-154 3-53 (141)
470 cd03235 ABC_Metallic_Cations A 90.2 0.38 8.3E-06 48.5 4.8 32 19-54 25-56 (213)
471 smart00382 AAA ATPases associa 90.2 0.25 5.4E-06 45.1 3.1 25 20-44 3-27 (148)
472 PRK05057 aroK shikimate kinase 90.1 0.28 6.1E-06 47.9 3.6 26 19-44 4-29 (172)
473 cd02023 UMPK Uridine monophosp 90.1 0.24 5.3E-06 49.4 3.2 21 22-42 2-22 (198)
474 cd00820 PEPCK_HprK Phosphoenol 90.1 0.27 6E-06 43.8 3.1 22 19-40 15-36 (107)
475 PF09186 DUF1949: Domain of un 90.1 0.38 8.2E-06 37.2 3.6 56 643-701 1-56 (56)
476 cd03111 CpaE_like This protein 90.0 0.82 1.8E-05 40.7 6.2 34 99-134 44-77 (106)
477 PF14578 GTP_EFTU_D4: Elongati 90.0 4.1 9E-05 34.3 9.8 47 302-364 20-66 (81)
478 PF13238 AAA_18: AAA domain; P 89.9 0.26 5.6E-06 44.9 3.0 22 22-43 1-22 (129)
479 COG1428 Deoxynucleoside kinase 89.9 0.29 6.2E-06 48.8 3.3 25 20-44 5-29 (216)
480 smart00763 AAA_PrkA PrkA AAA d 89.9 0.44 9.6E-06 51.8 5.1 35 18-52 77-111 (361)
481 COG0410 LivF ABC-type branched 89.6 0.41 9E-06 48.3 4.3 26 20-48 30-55 (237)
482 PF00005 ABC_tran: ABC transpo 89.6 0.3 6.5E-06 45.3 3.2 20 20-39 12-31 (137)
483 PRK14738 gmk guanylate kinase; 89.6 0.31 6.7E-06 49.2 3.4 29 13-41 7-35 (206)
484 TIGR02782 TrbB_P P-type conjug 89.5 0.35 7.6E-06 51.7 4.0 25 18-42 131-155 (299)
485 cd03274 ABC_SMC4_euk Eukaryoti 89.4 0.3 6.4E-06 49.5 3.2 25 20-44 26-50 (212)
486 PRK13949 shikimate kinase; Pro 89.4 0.36 7.9E-06 47.0 3.7 25 20-44 2-26 (169)
487 KOG1491 Predicted GTP-binding 89.4 1.4 3E-05 47.0 8.0 108 12-135 13-128 (391)
488 PRK06696 uridine kinase; Valid 89.4 0.32 7E-06 49.6 3.5 28 16-43 19-46 (223)
489 PF13191 AAA_16: AAA ATPase do 89.3 0.43 9.3E-06 46.6 4.2 35 8-42 11-47 (185)
490 PTZ00301 uridine kinase; Provi 89.2 0.31 6.8E-06 49.3 3.2 22 20-41 4-25 (210)
491 PF00437 T2SE: Type II/IV secr 89.1 0.39 8.5E-06 50.5 4.0 35 8-42 115-150 (270)
492 TIGR00554 panK_bact pantothena 89.1 0.34 7.4E-06 51.4 3.4 24 17-40 60-83 (290)
493 PRK14493 putative bifunctional 89.0 0.35 7.5E-06 51.0 3.5 23 20-42 2-24 (274)
494 PRK06217 hypothetical protein; 89.0 0.4 8.6E-06 47.3 3.7 25 20-44 2-26 (183)
495 PRK00625 shikimate kinase; Pro 89.0 0.4 8.7E-06 46.9 3.7 24 21-44 2-25 (173)
496 KOG2484 GTPase [General functi 88.7 0.53 1.1E-05 51.0 4.6 40 5-44 232-277 (435)
497 PRK10078 ribose 1,5-bisphospho 88.7 0.34 7.4E-06 47.9 3.0 24 20-43 3-26 (186)
498 PRK13947 shikimate kinase; Pro 88.7 0.41 8.8E-06 46.4 3.5 25 20-44 2-26 (171)
499 cd00464 SK Shikimate kinase (S 88.7 0.38 8.2E-06 45.6 3.2 24 21-44 1-24 (154)
500 cd02034 CooC The accessory pro 88.6 0.54 1.2E-05 42.7 4.0 21 22-42 2-22 (116)
No 1
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-162 Score=1264.23 Aligned_cols=748 Identities=67% Similarity=1.102 Sum_probs=728.3
Q ss_pred CcccCHHHHHHhhcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEe
Q 004467 1 MVKFTAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80 (752)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~ 80 (752)
|+.|..++++.+|.+..+|||+++++|||||||||+++|...+|+|+..++|+.++||++++||||||||+|+.+++.|+
T Consensus 1 Mv~Ftvd~vr~lM~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e 80 (842)
T KOG0469|consen 1 MVAFTVDQVRELMDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFE 80 (842)
T ss_pred CccccHHHHHHHhccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhh
Confidence 88999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred eccchhccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH------------------------
Q 004467 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC------------------------ 136 (752)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~------------------------ 136 (752)
..+..++.+....+++++.|||||+|||+||++||..|||+.|||++|||+++|+|
T Consensus 81 ~~~~dl~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~ 160 (842)
T KOG0469|consen 81 MSDDDLKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKM 160 (842)
T ss_pred hhHhHHHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehh
Confidence 87777777777788889999999999999999999999999999999999999998
Q ss_pred -------------------------------------------------------------------HHHHHhCCCHHHH
Q 004467 137 -------------------------------------------------------------------MYASKFGVDESKM 149 (752)
Q Consensus 137 -------------------------------------------------------------------~~~~~~~~p~~~~ 149 (752)
.|++++|+.+-.+
T Consensus 161 DRAlLELq~~~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~km 240 (842)
T KOG0469|consen 161 DRALLELQLSQEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKM 240 (842)
T ss_pred hHHHHhhcCCHHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHH
Confidence 8899999999999
Q ss_pred HHHhhCCCCcchhhccccccC---CCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHH
Q 004467 150 MERLWGENFFDPATKKWTTKN---TGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKAL 226 (752)
Q Consensus 150 inkldg~~~~~~~~~~~~~~~---~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l 226 (752)
.|++||++|+++.+++|++.. .|. ++.+.||.|+++||+++++++++...+++..+++++++.+..++...++++|
T Consensus 241 m~~LWg~~~f~~ktkk~~~s~t~~~gn-~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~L 319 (842)
T KOG0469|consen 241 MNRLWGDNFFNPKTKKWSKSATDAEGN-PLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKAL 319 (842)
T ss_pred HHHhhcccccCccCCcccccccccccC-ccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHH
Confidence 999999999999999999765 454 6789999999999999999999999999999999999999888888899999
Q ss_pred HHHHHhccccchHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEE
Q 004467 227 MKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGR 306 (752)
Q Consensus 227 ~~~~~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~R 306 (752)
++.+|++|+|..++||++|.-++|||..+|.||.+.+|+||.+++..-+|++||+++|+.+||+|+.+..++|+|.+|||
T Consensus 320 lK~vMr~wLPAadallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGR 399 (842)
T KOG0469|consen 320 LKVVMRKWLPAADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGR 399 (842)
T ss_pred HHHHHHHhcchHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEeccccccccceeeccCCCCCccc
Q 004467 307 VFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHP 386 (752)
Q Consensus 307 V~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~Gl~~~~~~tgTL~~~~~~~~~~ 386 (752)
||||++.+|+++++.+|||.||++++++...|.+..+|||+..++++.++||||+++.|++++++++||+++.+ ....
T Consensus 400 VFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGTiTt~e--~AHN 477 (842)
T KOG0469|consen 400 VFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGTITTSE--AAHN 477 (842)
T ss_pred eecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccCceeehh--hhcc
Confidence 99999999999999999999999998888889999999999999999999999999999999999999999988 7788
Q ss_pred cccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEcCCCcEEEEecchhhHHHHHHHHHhhcCCCcEEEE
Q 004467 387 IRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIK 466 (752)
Q Consensus 387 ~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~etge~il~g~GelhLei~~~rL~~~f~~~vev~~ 466 (752)
+..|+|...||+.++|+++++.|++||.++|++|+++||...+..+|+||++|.|.||||||||+++|.+.|| +|.++.
T Consensus 478 mrvMKFSVSPVV~VAVe~Knp~DLpKLvEGLkrLakSDP~v~~~~~esGehiiAgaGeLHLEICLkDLeedhA-~iPlk~ 556 (842)
T KOG0469|consen 478 MRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHA-CIPLKK 556 (842)
T ss_pred ceEEEeeccceEEEEEecCChhhhHHHHHHHHHHhccCCeEEEEeccCCceEEeccchhhHHHHHhhHhhccc-CCceec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred eCcEEEEEeecccccceeEEeecCCCceEEEEEEEeCChhhHHHHHcCCCCCCCChHHHHHHhhhhcCCchhccCcEEEe
Q 004467 467 SDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCF 546 (752)
Q Consensus 467 s~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 546 (752)
|+|.|+||||+.++++..|.++|||+||++|++++||++++.+.|+.|.++++|++|.|+.+|.+.|+||-+++++||||
T Consensus 557 sdPvVsYrEtvs~~ss~~~lsKSpNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt~aRKIWCf 636 (842)
T KOG0469|consen 557 SDPVVSYRETVSEESSQTCLSKSPNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWDVTEARKIWCF 636 (842)
T ss_pred CCCeeeeecccccccchhhhccCCcccceeEEecccCCchhhhhhhcCccChhHHHHHHHHHHHHHhCCchhhhheeeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCcCCCCeeeeEEEEEeeeecccccccCCCchHHHHHHHHHHH
Q 004467 547 GPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYAS 626 (752)
Q Consensus 547 ~P~~~~~n~~~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~d~~~~~~~~~~~a~~~a~~~a 626 (752)
||+..|+|+++|.++|.+|+++|++++.+|||||.++|||+||.++||+|.|.|..+|+|..|++++|+++.+|++|+.+
T Consensus 637 gPd~tg~Nll~D~TK~vqylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIHRGggQiipt~rr~~ya~ 716 (842)
T KOG0469|consen 637 GPDGTGPNLLVDQTKGVQYLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIHRGGGQIIPTARRVLYAS 716 (842)
T ss_pred CCCCCCCcEEEecchhhHHHHHHHHHHHHHHHHHhccCCcccccccceeEEeeeeeeehhhhhcCCCeechHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEEeeEEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhhcCchHHhhhhCCCceeeee
Q 004467 627 QLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQC 706 (752)
Q Consensus 627 ~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 706 (752)
++.|+|+|+||+|.|||+||+.++|.||++|++|||++.+++...|+++|.|+|++|+.|+|||..+|||.|+|+|.+||
T Consensus 717 ~l~A~P~l~EPvylvEIq~pe~avGgiy~vLn~kRG~v~~e~q~~Gtp~f~vkayLPVnESFgFt~dLrs~t~GqAfpq~ 796 (842)
T KOG0469|consen 717 VLTAGPILQEPVYLVEIQCPEQAVGGIYGVLNRKRGHVFEEEQVPGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQM 796 (842)
T ss_pred HHhcCceecCceEEEEEeCchhhhchhhheeeccccceecccccCCCcceEEEEEeecccccccchhhhcccCCccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecceeecCCCCCCCchHHHHHHHHHHHhcCCCCCCCCcccccccC
Q 004467 707 VFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 752 (752)
Q Consensus 707 ~f~~y~~v~~d~~~~~~~~~~~~~~~r~rkGl~~~i~~~~~~~~~l 752 (752)
.|+||+++|+||+|++|..-+++.++||||||.|.+|.+.+|+|||
T Consensus 797 vFdHws~lpgdp~dp~sk~~~iV~~~RKrkglke~~P~~~~y~Dkl 842 (842)
T KOG0469|consen 797 VFDHWSILPGDPLDPTSKPGQIVLATRKRKGLKEGVPDLDEYLDKL 842 (842)
T ss_pred eeeccccCCCCCCCCCccchHHHHHHHHhcCCCCCCCChHHHhhcC
Confidence 9999999999999999999999999999999999999999999997
No 2
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=1.3e-138 Score=1238.99 Aligned_cols=752 Identities=91% Similarity=1.375 Sum_probs=665.4
Q ss_pred CcccCHHHHHHhhcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEe
Q 004467 1 MVKFTAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80 (752)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~ 80 (752)
|.+|++++|.++|+++++||||||+||+|||||||+++||+.+|.|++...|..+++|++++||+|||||+++.+++.|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~ 80 (843)
T PLN00116 1 MVKFTAEELRRIMDKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80 (843)
T ss_pred CCccCHHHHHHHhhCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEee
Confidence 78999999999999999999999999999999999999999999999887888889999999999999999999999996
Q ss_pred eccchhccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHh
Q 004467 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERL 153 (752)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkl 153 (752)
+....+..+....+.+++.|||||||||.||..++.+|++.+|+||+||||.+|++ +++.+.++|+++|+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~ 160 (843)
T PLN00116 81 MTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKM 160 (843)
T ss_pred cccccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECC
Confidence 32221112222234457999999999999999999999999999999999999988 67788899999999999
Q ss_pred hCC-------------CCcchhhc-----------cccc-----------------------------------------
Q 004467 154 WGE-------------NFFDPATK-----------KWTT----------------------------------------- 168 (752)
Q Consensus 154 dg~-------------~~~~~~~~-----------~~~~----------------------------------------- 168 (752)
|.. +|.+.++. .++.
T Consensus 161 D~~~~~~~~~~~~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l 240 (843)
T PLN00116 161 DRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKM 240 (843)
T ss_pred cccchhhcCCHHHHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHH
Confidence 944 23222211 0000
Q ss_pred -------------------cCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHH
Q 004467 169 -------------------KNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKR 229 (752)
Q Consensus 169 -------------------~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~ 229 (752)
.+.+.....+.|++++++++|++++++++.+++++++|++.+++.++.+++....+++++.
T Consensus 241 ~~~lwg~~~~~~~~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~ 320 (843)
T PLN00116 241 MERLWGENFFDPATKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKR 320 (843)
T ss_pred HHHhhccceEcCCCceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHH
Confidence 0000101124577788899999999999999999999999988889998887677888898
Q ss_pred HHhccccchHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEe
Q 004467 230 VMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFS 309 (752)
Q Consensus 230 ~~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~S 309 (752)
.+..|+|.++.|||++++++|||.+++..+...+|.++..++....+..|++++|++++|||+..+++.|++++|+||||
T Consensus 321 ~~~pv~~~s~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVys 400 (843)
T PLN00116 321 VMQTWLPASDALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFS 400 (843)
T ss_pred HHHhhcCChHHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEe
Confidence 89999999999999999999999988777787778775444445678889999999999999998888887899999999
Q ss_pred eeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEeccccccccceeeccCCCCCcccccc
Q 004467 310 GKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRA 389 (752)
Q Consensus 310 GtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~Gl~~~~~~tgTL~~~~~~~~~~~~~ 389 (752)
|+|++||+|+++++|++++++++...+++.+||.++|++..+|++|.|||||+|.|++++.++++||++.....+.++++
T Consensus 401 GtL~~g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~~~~~l~~ 480 (843)
T PLN00116 401 GTVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIKA 480 (843)
T ss_pred eeecCCCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCcccCCccccc
Confidence 99999999999998887765544555799999999999999999999999999999998755556998764112455667
Q ss_pred ccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEcCCCcEEEEecchhhHHHHHHHHHhhcCCCcEEEEeCc
Q 004467 390 MKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDP 469 (752)
Q Consensus 390 ~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~etge~il~g~GelhLei~~~rL~~~f~~~vev~~s~p 469 (752)
+.++.+|+++++|+|.+++|.++|.+||++|.+|||+|+++.++|||++|+||||+|||+|++||+++|++|+++++|+|
T Consensus 481 ~~~~~~Pv~~~aIeP~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElHLEi~~~rL~~~f~~~vev~~s~p 560 (843)
T PLN00116 481 MKFSVSPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQCTIEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIKVSDP 560 (843)
T ss_pred cccCCCceEEEEEEECChhhHHHHHHHHHHHHHhCCCeEEEEcCCCCEEEEEccHHHHHHHHHHHHHHhhCCCcEEEcCC
Confidence 77756999999999999999999999999999999999997779999999999999999999999999965799999999
Q ss_pred EEEEEeecccccceeEEeecCCCceEEEEEEEeCChhhHHHHHcCCCCCCCChHHHHHHhhhhcCCchhccCcEEEeccC
Q 004467 470 VVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPE 549 (752)
Q Consensus 470 ~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~P~ 549 (752)
+|+|||||.++++..+..+.+++|++++++++|+++++.+.++.+.+...++.+.+...|...|+|+...++++|+|||.
T Consensus 561 ~V~yrETI~~~~~~~~~~~~~~~~~~v~l~iePl~~~~~~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~gp~ 640 (843)
T PLN00116 561 VVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWCFGPE 640 (843)
T ss_pred eEEEEecccccccCcEEEecCCceEEEEEEEEECCHHHHHHHHcCCcccCcchHHHHHHhhhhcCcchhhhcCeeeecCC
Confidence 99999999998765555567889999999999999999899998877666666666667777899999999999999998
Q ss_pred CCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCcCCCCeeeeEEEEEeeeecccccccCCCchHHHHHHHHHHHHHh
Q 004467 550 TTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLT 629 (752)
Q Consensus 550 ~~~~n~~~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~d~~~~~~~~~~~a~~~a~~~a~~~ 629 (752)
..|+|+|++.+.|.+|+++++++|++||++|+++|||||+||+||+|+|+|+++|.|+.++.+++|++|+++||++||++
T Consensus 641 ~~~~~~~~~~~~g~~~~~~i~~ai~~G~~~a~~~GpL~g~Pv~~V~v~l~d~~~h~d~~~~~~~~f~~A~~~a~~~Al~~ 720 (843)
T PLN00116 641 TTGPNMVVDMCKGVQYLNEIKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLHADAIHRGGGQIIPTARRVIYASQLT 720 (843)
T ss_pred CCCceEEEECCcchhhHHHHHHHHHHHHHHHHhcCCccCCeeeeEEEEEEEeeccCcccccchhhHHHHHHHHHHHHHHh
Confidence 88889999999999999999999999999999999999999999999999999998888888889999999999999999
Q ss_pred CCCeEEeeEEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhhcCchHHhhhhCCCceeeeeEec
Q 004467 630 AKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFD 709 (752)
Q Consensus 630 a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~ 709 (752)
|+|+||||||+|||+||++++|+|++||++|||+|+++++.+++..++|+|++|++|||||+++|||+|+|+|+|+|+|+
T Consensus 721 a~p~LlEPi~~veI~~p~~~~G~V~~dL~~RRG~i~~~~~~~~t~~~~I~A~vPl~e~~gy~~~LRs~T~G~g~~~~~f~ 800 (843)
T PLN00116 721 AKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFD 800 (843)
T ss_pred CCCEEeeceeEEEEEccHHHHhHHHHHHHhcCCccceeeecCCCceEEEEEEeeHHHHcCCCHHHHhhCCCCCeEEEEec
Confidence 99999999999999999999999999999999999999987777779999999999999999999999999999999999
Q ss_pred ceeecCCCCCCCchHHHHHHHHHHHhcCCCCCCCCcccccccC
Q 004467 710 HWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 752 (752)
Q Consensus 710 ~y~~v~~d~~~~~~~~~~~~~~~r~rkGl~~~i~~~~~~~~~l 752 (752)
||++||+||||++|+++++|.++||||||+|++|.+.+|+|||
T Consensus 801 ~y~~v~~dp~~~~~~a~~~~~~~R~rKGl~~~~~~~~~~~d~~ 843 (843)
T PLN00116 801 HWDMMSSDPLEAGSQAAQLVADIRKRKGLKEQMPPLSEYEDKL 843 (843)
T ss_pred eeEECCCCCCCchhHHHHHHHHHHhhCCCCCCCCCHHHhcccC
Confidence 9999999999999999999999999999999999999999997
No 3
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=1.5e-137 Score=1226.91 Aligned_cols=743 Identities=65% Similarity=1.079 Sum_probs=659.8
Q ss_pred CcccCHHHHHHhhcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEe
Q 004467 1 MVKFTAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80 (752)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~ 80 (752)
|.+|+.++|..+|+++++||||||+||+|||||||+++|++.+|.+++...|+.+++|++++||+|||||+++.+++.|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~ 80 (836)
T PTZ00416 1 MVNFTVDQIREIMDNPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYE 80 (836)
T ss_pred CCccCHHHHHHHhhCccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEee
Confidence 77899999999999999999999999999999999999999999998887888888999999999999999999999996
Q ss_pred eccchhccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHh
Q 004467 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERL 153 (752)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkl 153 (752)
... ....+.+++.|||||||||.||..++.+|++.+|+||+||||++|++ +++.+.++|.++|+|||
T Consensus 81 ~~~------~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~ 154 (836)
T PTZ00416 81 HDL------EDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKV 154 (836)
T ss_pred ccc------ccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEECh
Confidence 310 11123357899999999999999999999999999999999999988 66777899999999999
Q ss_pred hCC-------------CCcchhhc--------------------------------------------------------
Q 004467 154 WGE-------------NFFDPATK-------------------------------------------------------- 164 (752)
Q Consensus 154 dg~-------------~~~~~~~~-------------------------------------------------------- 164 (752)
|.. +|...+..
T Consensus 155 D~~~~~~~~~~~~~~~~~~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l 234 (836)
T PTZ00416 155 DRAILELQLDPEEIYQNFVKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKM 234 (836)
T ss_pred hhhhhhcCCCHHHHHHHHHHHHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHH
Confidence 944 22211110
Q ss_pred ---cccc-----c-------C--CCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHH
Q 004467 165 ---KWTT-----K-------N--TGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALM 227 (752)
Q Consensus 165 ---~~~~-----~-------~--~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~ 227 (752)
.|+. . + .......+.|++++++|+|++++++++.+++++++|++.+++.++.++.....+.++
T Consensus 235 ~~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~ 314 (836)
T PTZ00416 235 MERLWGDNFFDAKTKKWIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLL 314 (836)
T ss_pred HHHHhccccccCCCCEEEeccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHH
Confidence 0100 0 0 000012345778888999999999999999999999998888888887655556788
Q ss_pred HHHHhccccchHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEE
Q 004467 228 KRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRV 307 (752)
Q Consensus 228 ~~~~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV 307 (752)
+++++.|+|+++.|||+|++++|||.+++..+...+|.++..+.....++.|++++|++++|||+..+++.|++++|+||
T Consensus 315 ~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV 394 (836)
T PTZ00416 315 KAVMQKWLPAADTLLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRV 394 (836)
T ss_pred HHHHHHHhchHHHHHHHHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEE
Confidence 99999999999999999999999999877766666666644344445678899999999999999999988888899999
Q ss_pred EeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEeccccccccceeeccCCCCCcccc
Q 004467 308 FSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPI 387 (752)
Q Consensus 308 ~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~Gl~~~~~~tgTL~~~~~~~~~~~ 387 (752)
|||+|++||+|+++++|++.+.+++++..++++||.++|++..+|++|.|||||+|.|+++.++++|||++.. .+.++
T Consensus 395 ~SGtL~~g~~v~v~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tgTL~~~~--~~~~l 472 (836)
T PTZ00416 395 FSGTVATGQKVRIQGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSGTITTSE--TAHNI 472 (836)
T ss_pred EeeeecCCCEEEEeCCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEEecccceecceeecCCC--Ccccc
Confidence 9999999999999998877665433333469999999999999999999999999999998667899998876 56677
Q ss_pred ccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEcCCCcEEEEecchhhHHHHHHHHHhhcCCCcEEEEe
Q 004467 388 RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKS 467 (752)
Q Consensus 388 ~~~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~etge~il~g~GelhLei~~~rL~~~f~~~vev~~s 467 (752)
+++.++++|+++++|+|.+++|.++|.++|++|.+|||+|.++.++|||++|+||||+|||+|++||+++|+ +|++++|
T Consensus 473 ~~i~~~~~Pv~~vaIep~~~~d~~kL~~aL~~L~~eDPsl~~~~~etgE~il~g~GElHLei~l~~L~~~f~-~vev~~s 551 (836)
T PTZ00416 473 RDMKYSVSPVVRVAVEPKNPKDLPKLVEGLKRLAKSDPLVVCTTEESGEHIVAGCGELHVEICLKDLEDDYA-NIDIIVS 551 (836)
T ss_pred cccccCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCceEEEEcCCCCeEEEeCcHhHHHHHHHHHHHHhc-CcceEec
Confidence 777775699999999999999999999999999999999999777999999999999999999999999997 8999999
Q ss_pred CcEEEEEeecccccceeEEeecCCCceEEEEEEEeCChhhHHHHHcCCCCCCCChHHHHHHhhhhcCCchhccCcEEEec
Q 004467 468 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFG 547 (752)
Q Consensus 468 ~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~ 547 (752)
+|+|+|||||.+.++..+..+.+++|+++++++|||++++.+.++.+.+......+.+...+...|+|+...++++|+|+
T Consensus 552 ~P~V~yrETI~~~s~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f~ 631 (836)
T PTZ00416 552 DPVVSYRETVTEESSQTCLSKSPNKHNRLYMKAEPLTEELAEAIEEGKVGPEDDPKERANFLADKYEWDKNDARKIWCFG 631 (836)
T ss_pred CCEEEEEEEecccccceEEEECCCCCeeEEEEEEECCHHHHhHhhcCccccccchhHHHhhhhcccCcchhhhhCeeecc
Confidence 99999999999998877777888999999999999999988888887765444444444556678999999999999999
Q ss_pred cCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCcCCCCeeeeEEEEEeeeecccccccCCCchHHHHHHHHHHHH
Q 004467 548 PETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 627 (752)
Q Consensus 548 P~~~~~n~~~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~d~~~~~~~~~~~a~~~a~~~a~ 627 (752)
|...|+|++++.+.+.+|+++++++|++||+||+++|||||+||+||+|+|+|+++|.|+.++..++|++|+++||++||
T Consensus 632 ~~~~g~nil~~~~~~~~~~~~~~~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~~~~~~~~~f~~a~~~a~~~a~ 711 (836)
T PTZ00416 632 PENKGPNVLVDVTKGVQYMNEIKDSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTARRVFYACE 711 (836)
T ss_pred CCCCCCcEEEecCCcccchHHHHHHHHHHHHHHHhcCcccCCcccceEEEEEEeeccccccccchHHHHHHHHHHHHHHH
Confidence 99899999999998989999999999999999999999999999999999999999987778888899999999999999
Q ss_pred HhCCCeEEeeEEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhhcCchHHhhhhCCCceeeeeE
Q 004467 628 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCV 707 (752)
Q Consensus 628 ~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~ 707 (752)
++|+|+||||||.|+|+||++++|+|++||++|||+|+++++.+++..++|+|++|++|||||+++||++|+|+|+|+|+
T Consensus 712 ~~a~p~LlEPi~~veI~~p~~~lg~V~~dL~~RRG~i~~~~~~~~t~~~~I~a~vP~~e~~gy~~~LRs~T~G~g~~~~~ 791 (836)
T PTZ00416 712 LTASPRLLEPMFLVDITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAESFGFTAALRAATSGQAFPQCV 791 (836)
T ss_pred hhCCCEEEeeeEEEEEEEcHHHHhHHHHHHHhcCCCccCcccCCCCCcEEEEEEEehHHhcCCCHHHHhhCcCCceEEEE
Confidence 99999999999999999999999999999999999999999887777799999999999999999999999999999999
Q ss_pred ecceeecCCCCCCCchHHHHHHHHHHHhcCCCCCCCCcccccccC
Q 004467 708 FDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 752 (752)
Q Consensus 708 f~~y~~v~~d~~~~~~~~~~~~~~~r~rkGl~~~i~~~~~~~~~l 752 (752)
|+||++||+||||++|+|++||.++||||||++++|.+.+|+|||
T Consensus 792 F~~y~~vp~dp~~~~~~a~~~~~~~R~rKGl~~~~~~~~~~~~~~ 836 (836)
T PTZ00416 792 FDHWQVVPGDPLEPGSKANEIVLSIRKRKGLKPEIPDLDNYLDKL 836 (836)
T ss_pred eccEEECCCCCCCchhHHHHHHHHHHHhCCCCCCCCCHHHhcccC
Confidence 999999999999999999999999999999999999999999997
No 4
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-125 Score=1011.88 Aligned_cols=735 Identities=41% Similarity=0.727 Sum_probs=675.5
Q ss_pred cccCHHHHHHhhcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccc-cCCCccccCCchhHhHhcceeccceEEEEEe
Q 004467 2 VKFTAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE-VAGDVRMTDTRADEAERGITIKSTGISLYYE 80 (752)
Q Consensus 2 ~~~~~~~~~~~~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~-~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~ 80 (752)
+.|+.+|+..+|+++.++|||+++||.+||||+|.+.|...++.--.. .--..+|+|.+..|+|||+||++...++...
T Consensus 111 T~y~~~yl~~l~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~ 190 (971)
T KOG0468|consen 111 TVYDLEYLAGLMDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLS 190 (971)
T ss_pred hhhhHHHHHHhccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEe
Confidence 458999999999999999999999999999999999999888832111 0112479999999999999999999999876
Q ss_pred eccchhccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH------------------------
Q 004467 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC------------------------ 136 (752)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~------------------------ 136 (752)
+ .++++|.+|++|||||+||+.|+.++++++|++|||||+.+||.
T Consensus 191 D-----------~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKi 259 (971)
T KOG0468|consen 191 D-----------SKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKV 259 (971)
T ss_pred c-----------CcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehh
Confidence 3 46689999999999999999999999999999999999999987
Q ss_pred -----------------------------------------------------------------HHHHHhC-CCHHHHH
Q 004467 137 -----------------------------------------------------------------MYASKFG-VDESKMM 150 (752)
Q Consensus 137 -----------------------------------------------------------------~~~~~~~-~p~~~~i 150 (752)
.|+..++ +..--|.
T Consensus 260 DRLilELkLPP~DAY~KLrHii~~iN~~is~~s~~~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa 339 (971)
T KOG0468|consen 260 DRLILELKLPPMDAYYKLRHIIDEINNLISTFSKDDNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFA 339 (971)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHhcchhhhcccccccccccccCceeeeccccceeeehHHHHHHHHHhcCCcchhhhh
Confidence 2333332 4455677
Q ss_pred HHhhCCCCcchhhccccccC-CCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHH
Q 004467 151 ERLWGENFFDPATKKWTTKN-TGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKR 229 (752)
Q Consensus 151 nkldg~~~~~~~~~~~~~~~-~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~ 229 (752)
.++||+-||+..+++|.+++ .|. ..+.||+|+++|+++++..+....+..+...+..+|+.++.++++.+.+.+++-
T Consensus 340 ~RLWGdvYf~~ktrkF~kk~~~~~--~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~l 417 (971)
T KOG0468|consen 340 KRLWGDVYFHSKTRKFVKKPPDGS--GSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLRL 417 (971)
T ss_pred hhhhccccccccccccccCCCCCc--ccchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHHHH
Confidence 89999999999999998876 332 357999999999999999998888888999999999999999999999999999
Q ss_pred HHhccccchHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEe
Q 004467 230 VMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFS 309 (752)
Q Consensus 230 ~~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~S 309 (752)
+...|+..-..+.|++++++|||.+....+..+.|.|+.+..+...+..|++++||+..++|+++..+.-.|.+|+||+|
T Consensus 418 vc~~ffg~~sgfvd~~v~hi~sP~e~a~~K~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~S 497 (971)
T KOG0468|consen 418 VCKSFFGIESGFVDMPVEHIPSPRENAARKAEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYS 497 (971)
T ss_pred HHHHhccchhhhhHhhHhhcCChhhhhccccceeecCCCcchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeeee
Confidence 99888888888999999999999998777788889998777777788899999999999999999888778999999999
Q ss_pred eeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEeccccccccceeeccCCC-CCccccc
Q 004467 310 GKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKE-VDAHPIR 388 (752)
Q Consensus 310 GtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~Gl~~~~~~tgTL~~~~~-~~~~~~~ 388 (752)
|+++.|+.|.+++.|+.....++.....|++++++.+++..+|.+|.||.++.|.|++..++++.|+++.+. .....++
T Consensus 498 g~~~~~q~V~vlgeny~leDEeD~~~~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFr 577 (971)
T KOG0468|consen 498 GQVVTGQDVRVLGENYSLEDEEDMVICEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFR 577 (971)
T ss_pred cceeecceeeEeeccccCCCcccceeeeeeeeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeecc
Confidence 999999999999999988877788888999999999999999999999999999999999999999988753 1345678
Q ss_pred cccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEcCCCcEEEEecchhhHHHHHHHHHhhcCCCcEEEEeC
Q 004467 389 AMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSD 468 (752)
Q Consensus 389 ~~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~etge~il~g~GelhLei~~~rL~~~f~~~vev~~s~ 468 (752)
++.|.+.|+++++++|.+|++++||.+||++.++.+|.+....+|+||++|.|-|||.|++++++||.-|+ .||+++++
T Consensus 578 pl~~~t~~VvKiaveP~nPsELPKmldgLrKinKsYPl~~tkVEESGEHvilGtGElYmDcvlyDLR~~ys-eieikvaD 656 (971)
T KOG0468|consen 578 PLKFNTEPVVKVAVEPLNPSELPKMLDGLRKINKSYPLVITKVEESGEHVILGTGELYMDCVLYDLRKSYS-EIEIKVAD 656 (971)
T ss_pred chhcCCcceEEEEeccCChhhhhHHHHHHHhhcccCCcEEEehhhcCceEEecCchhhHHHHHHHHHHHHh-hhceeecC
Confidence 89998899999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred cEEEEEeecccccceeEEeecCCCceEEEEEEEeCChhhHHHHHcCCCCCCCChHHHHHHhhhhcCCchhccCcEEEecc
Q 004467 469 PVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGP 548 (752)
Q Consensus 469 p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~P 548 (752)
|.|.|.||+.++++..|+++++|+.|+|++.+|||+..+.++|++|.+......+...++++.+|+||..++++||+|||
T Consensus 657 Pvv~F~Et~vetssikcfaetpnkknkItmiaEPlek~l~eDiEng~v~I~wn~krl~effqt~YdWDlLAaRsiWaFgp 736 (971)
T KOG0468|consen 657 PVVRFCETVVETSSIKCFAETPNKKNKITMIAEPLEKGLAEDIENGVVVIDWNRKRLGEFFQTKYDWDLLAARSIWAFGP 736 (971)
T ss_pred ceeEEEEeeecccchhhhccCCCccCceeeeechhhhhhhHHhhcCeEEeccchhhhhhhhhcccchhhhhhcceeccCC
Confidence 99999999999999999999999999999999999999999999988776666777888999999999999999999999
Q ss_pred CCCCCceEEeccc----CccchHHHHHHHHHHHHHHHHcCCcCCCCeeeeEEEEEeeeecccccccCCCchHHHHHHHHH
Q 004467 549 ETTGPNMVVDMCK----GVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIY 624 (752)
Q Consensus 549 ~~~~~n~~~~~~~----~~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~d~~~~~~~~~~~a~~~a~~ 624 (752)
+..|+|+|+|++- ...++..++++|++||||++++||||+||+++|+|+|.|+.+..+..+++++|+++++|++|+
T Consensus 737 d~~GpNiL~dDTLp~evdk~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgggQiIPtaRrv~Y 816 (971)
T KOG0468|consen 737 DYTGPNILLDDTLPTEVDKNLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQIIPTARRVAY 816 (971)
T ss_pred CCCCCceeecCcCcchhhHHHHHHHHHHHHHHHHHHhccCCccCCcccceeEEEeecccCccccccCCCccchHHHHHHH
Confidence 9999999999983 456788899999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHhCCCeEEeeEEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhhcCchHHhhhhCCCceee
Q 004467 625 ASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFP 704 (752)
Q Consensus 625 ~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~ 704 (752)
.||..|.|+||||+|.|||++|.+++..|+.+|++|||+|....+..|++++.|+|++|+.|||||.++||-.|||+|.+
T Consensus 817 safL~AtPrLmEP~Y~VEi~apad~v~~Vy~vl~rRRGhV~~d~p~pGSPly~v~a~iPvieSfGFETDLR~hTqGqa~C 896 (971)
T KOG0468|consen 817 SAFLMATPRLMEPVYLVEITAPADCVPAVYTVLSRRRGHVTQDIPVPGSPLYTVKAYLPVIESFGFETDLRVHTQGQAFC 896 (971)
T ss_pred HHHHhhchhhcCceEEEEEecccchHHHHHHHHHhhcCceeecCCCCCCchhheeeecccccccCcccceeeeccchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEecceeecCCCCCCC------------chHHHHHHHHHHHhcCCCCCCCCccccccc
Q 004467 705 QCVFDHWDMMSSDPLEP------------GTQAAQLVADIRKRKGLKEQMTPLSEFEDK 751 (752)
Q Consensus 705 ~~~f~~y~~v~~d~~~~------------~~~~~~~~~~~r~rkGl~~~i~~~~~~~~~ 751 (752)
++.|.||++||+||+|+ +.+|++++.++||||||+|+ ++..+|+|+
T Consensus 897 ~~vF~HW~~VPGDpLDKsi~i~~Lep~p~~~LaReFmiKTRRRKGlsed-vS~~kffd~ 954 (971)
T KOG0468|consen 897 LSVFDHWRIVPGDPLDKSIAIRPLEPAPIRHLAREFMIKTRRRKGLSED-VSINKFFDD 954 (971)
T ss_pred HHhhhhcccCCCCccccccccccCCCCCcchhHHHHHHHhhhhcccccc-cccCcccch
Confidence 99999999999999984 57999999999999999999 588888874
No 5
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8e-123 Score=1058.24 Aligned_cols=625 Identities=36% Similarity=0.554 Sum_probs=532.0
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCcc----ccCCchhHhHhcceeccceEEEEEeeccchhccccC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR----MTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG 91 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~----~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~ 91 (752)
++++|||+|+||+|||||||+|+||+++|.+++ +|+++ +||++++||+|||||+|+.+++.|+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k--~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~----------- 73 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISK--IGEVHDGAATMDWMEQEQERGITITSAATTLFWK----------- 73 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCC--CccccCCCccCCCcHHHHhcCCEEeeeeeEEEEc-----------
Confidence 789999999999999999999999999999999 88876 9999999999999999999999997
Q ss_pred CCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh--CCCCcchh
Q 004467 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW--GENFFDPA 162 (752)
Q Consensus 92 ~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld--g~~~~~~~ 162 (752)
.+++|||||||||+||+.||.++|+++|+||+||||++||+ +++.++++|+++|+|||| +++|+.+.
T Consensus 74 ----~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~ 149 (697)
T COG0480 74 ----GDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVV 149 (697)
T ss_pred ----CceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhH
Confidence 14999999999999999999999999999999999999999 999999999999999999 88998887
Q ss_pred hc---cccccC------CCCccccCcceeeEe--------------chHH------------HHHHHhhccchhhHHHHH
Q 004467 163 TK---KWTTKN------TGSATCKRGFVQFCY--------------EPIK------------QIINTCMNDQKDKLWPML 207 (752)
Q Consensus 163 ~~---~~~~~~------~g~~~~~~~fv~~~l--------------~~i~------------~l~~~~~~~~~~~l~~~l 207 (752)
.. ++...+ +|.+..+.++++++. .+++ .+++.+++.+++.+++|+
T Consensus 150 ~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl 229 (697)
T COG0480 150 EQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYL 229 (697)
T ss_pred HHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHh
Confidence 63 333322 444333333332211 1111 356677778888888888
Q ss_pred HHcCCCCChhhHhhchHHHHHHHH-hcccc----------chHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccc
Q 004467 208 QKLGVTMKSEEKDLMGKALMKRVM-QTWLP----------ASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAI 276 (752)
Q Consensus 208 ~~l~~~l~~~~~~~~~~~l~~~~~-~~~~P----------~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i 276 (752)
+. ..++.+++. +.+.+... ..++| .++.|||++++++|+|.+.+ .|.|...++....+
T Consensus 230 ~g--~e~~~~~i~---~~i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~------~~~g~~~~~~~~~~ 298 (697)
T COG0480 230 EG--EEPTEEEIK---KALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVP------PIKGDLDDEIEKAV 298 (697)
T ss_pred cC--CCccHHHHH---HHHHHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcc------cccccCCccccchh
Confidence 77 556666553 23333332 23444 37999999999999998876 23443333321222
Q ss_pred -cccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccc
Q 004467 277 -RNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDV 355 (752)
Q Consensus 277 -~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea 355 (752)
..++.++||+|+|||+..+++.|. ++|+|||||+|++||.+++.+ .+++ +||.+|+.++|+++++++++
T Consensus 299 ~~~~~~e~p~~a~vfKi~~d~~~g~-l~~~RvysGtl~~G~~v~n~~----~~~~-----erv~~l~~~~~~~~~~v~~~ 368 (697)
T COG0480 299 LRKASDEGPLSALVFKIMTDPFVGK-LTFVRVYSGTLKSGSEVLNST----KGKK-----ERVGRLLLMHGNEREEVDEV 368 (697)
T ss_pred cccCCCCCceEEEEEEeEecCCCCe-EEEEEEeccEEcCCCEEEeCC----CCcc-----EEEEEEEEccCCceeecccc
Confidence 233568999999999999999887 899999999999999999643 2333 79999999999999999999
Q ss_pred cCCCEEEEeccccccccce-eeccCCCCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEc-C
Q 004467 356 PCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-E 433 (752)
Q Consensus 356 ~AGdIvai~Gl~~~~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~-e 433 (752)
.||||+++.||+++ .+| |+|+.. ....+..+.|+ +||+.++|+|++++|.+||.++|++|++|||+++++.| |
T Consensus 369 ~AG~I~a~~Gl~~~--~tGdTl~~~~--~~v~~~~~~~p-ePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~E 443 (697)
T COG0480 369 PAGDIVALVGLKDA--TTGDTLCDEN--KPVILESMEFP-EPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEE 443 (697)
T ss_pred cCccEEEEEccccc--ccCCeeecCC--CccccccccCC-CceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEEcCC
Confidence 99999999999997 566 999877 56788899988 99999999999999999999999999999999999997 9
Q ss_pred CCcEEEEecchhhHHHHHHHHHhhcCCCcEEEEeCcEEEEEeecccccceeEE----eecCCCceEEEEEEEeCChhhHH
Q 004467 434 SGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVM----SKSPNKHNRLYMEARPLEEGLAE 509 (752)
Q Consensus 434 tge~il~g~GelhLei~~~rL~~~f~~~vev~~s~p~V~yrETi~~~~~~~~~----~~~~~~~~~i~~~~ePl~~~~~~ 509 (752)
|||++|+|||||||||+++||+++| ||++.+++|+|+|||||.+.+..... +.++++|+++++++||++++.
T Consensus 444 tge~iIsGmGELHLei~~drl~~~~--~Vev~~~~PqV~YrETi~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~~~~-- 519 (697)
T COG0480 444 TGETIISGMGELHLEIIVDRLKREF--GVEVEVGKPQVAYRETIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLEDGS-- 519 (697)
T ss_pred cccEEEEecchhhHHHHHHHHHhhc--CceEEecCCeeEEEEeecccccceeeeeeccCCCCcccEEEEEEEeCCCCc--
Confidence 9999999999999999999999999 99999999999999999988652221 224555555666665554321
Q ss_pred HHHcCCCCCCCChHHHHHHhhhhcCCchhccCcEEEeccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCcCCC
Q 004467 510 AIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEE 589 (752)
Q Consensus 510 ~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~P~~~~~n~~~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~~ 589 (752)
.+.|.+.+.++..+.++++++.+||++|+++|||+||
T Consensus 520 -------------------------------------------~~~f~~~i~~g~~P~~yi~~ve~G~~~a~~~GpLag~ 556 (697)
T COG0480 520 -------------------------------------------GFEFVDKIVGGVVPKEYIPAVEKGFREALKSGPLAGY 556 (697)
T ss_pred -------------------------------------------ceEEEeecccCcCchhhhHHHHHHHHHHHhcCCCCCC
Confidence 4667777777888889999999999999999999999
Q ss_pred CeeeeEEEEEeeeecccccccCCCchHHHHHHHHHHHHHhCCCeEEeeEEEEEEEecCcccccHHHHhhhhccccccccc
Q 004467 590 NMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQ 669 (752)
Q Consensus 590 pv~~v~v~l~d~~~~~d~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~ 669 (752)
||+||+|+|+|+++|.+. ++..+|..|+++||++|+.+|+|+||||||+|+|++|++++|+|+++|++|||+|++++.
T Consensus 557 pv~dvkv~L~dgs~h~vd--ss~~af~~a~~~a~~~a~~~a~P~lLEPi~~veI~~P~d~~G~V~~~l~~rRG~I~~~~~ 634 (697)
T COG0480 557 PVVDVKVTLLDGSYHEVD--SSEMAFKIAASLAFKEAMLKAKPVLLEPIMKVEITTPEEYMGDVIGDLNSRRGQILGMEQ 634 (697)
T ss_pred ceEeeEEEEEcCccccCC--CCHHHHHHHHHHHHHHHHhhCCceEecceEEEEEEcchhhhchhHHhhhhcceEEeceee
Confidence 999999999999999732 445688999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEEecchhhcCchHHhhhhCCCceeeeeEecceeecCCCCCCCchHHHHHHHHHHHhcCC
Q 004467 670 RPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGL 738 (752)
Q Consensus 670 ~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~d~~~~~~~~~~~~~~~r~rkGl 738 (752)
+.++.++.|+|++|++|||||+++|||+|+|+|.|+|+|+||++||. |++++++.+.|+|||+
T Consensus 635 ~~~~~~~~i~A~vPl~Emfgya~dLRs~T~Gra~~~m~f~~y~~vp~------~~a~~ii~~~~~~~~~ 697 (697)
T COG0480 635 RPGGGLDVIKAEVPLAEMFGYATDLRSATQGRASFSMEFDHYEEVPS------SVAEEIIAKRRKRKGL 697 (697)
T ss_pred ccCCceEEEEEEechHHhccchhhhHhhcCCceeEEEEecccEeCCH------HHHHHHHHHhhhhcCC
Confidence 87667899999999999999999999999999999999999999995 4799999999999986
No 6
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=1.8e-121 Score=1081.15 Aligned_cols=686 Identities=41% Similarity=0.676 Sum_probs=575.0
Q ss_pred CHHHHHHhhcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccc
Q 004467 5 TAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDD 84 (752)
Q Consensus 5 ~~~~~~~~~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~ 84 (752)
.+++|.++|+++++||||+|+||+|||||||+++|++.+|.+++...|..+++|++++||+|||||+++.+++.|..
T Consensus 6 ~~~~~~~~~~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~--- 82 (731)
T PRK07560 6 MVEKILELMKNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEY--- 82 (731)
T ss_pred HHHHHHHHhhchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEe---
Confidence 46889999999999999999999999999999999999999998777878899999999999999999999999952
Q ss_pred hhccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh--C
Q 004467 85 ALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW--G 155 (752)
Q Consensus 85 ~~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld--g 155 (752)
++++++|||||||||.||..++.++++.+|+||+|||+.+|++ .++.+.++|.++|+|||| +
T Consensus 83 ---------~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 83 ---------EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLI 153 (731)
T ss_pred ---------cCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhc
Confidence 2347899999999999999999999999999999999999987 556778999999999999 4
Q ss_pred CCCcchhhc---cccccC---------CCCcc--------ccCcceeeEec------hHHHHHHHhhccchhhHHHHHHH
Q 004467 156 ENFFDPATK---KWTTKN---------TGSAT--------CKRGFVQFCYE------PIKQIINTCMNDQKDKLWPMLQK 209 (752)
Q Consensus 156 ~~~~~~~~~---~~~~~~---------~g~~~--------~~~~fv~~~l~------~i~~l~~~~~~~~~~~l~~~l~~ 209 (752)
++|...... ++.... ..... ...+-+.+... ....+.+..++. ++.++.+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~-~~l~e~~~~- 231 (731)
T PRK07560 154 KELKLTPQEMQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKF-KDIIDYYEK- 231 (731)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCH-HHHHHHHhc-
Confidence 555333221 110000 00000 00000000000 000011111111 111111110
Q ss_pred cCCCCChhhHhhchHHHHHHHHhccccchHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEE
Q 004467 210 LGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYV 289 (752)
Q Consensus 210 l~~~l~~~~~~~~~~~l~~~~~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V 289 (752)
. ..++ +..|+|+.+.|||+|++++|||.++++++...+|.+...++.......|++++|++++|
T Consensus 232 --~--~~~~------------l~~~~Pv~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~V 295 (731)
T PRK07560 232 --G--KQKE------------LAEKAPLHEVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMV 295 (731)
T ss_pred --C--CHHH------------HHhhccchhHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEE
Confidence 0 0111 13569999999999999999999888777777777654443445667889999999999
Q ss_pred EEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEeccccc
Q 004467 290 SKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQF 369 (752)
Q Consensus 290 ~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~Gl~~~ 369 (752)
||+..+++.|. ++|+|||||+|++||.|++.+.+ .+ +++.+|+.++|++..++++|.|||||+|.|++++
T Consensus 296 fK~~~d~~~G~-va~~RV~sGtL~~Gd~v~~~~~~----~~-----~~v~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~~ 365 (731)
T PRK07560 296 TDIIVDPHAGE-VATGRVFSGTLRKGQEVYLVGAK----KK-----NRVQQVGIYMGPEREEVEEIPAGNIAAVTGLKDA 365 (731)
T ss_pred EeeEEcCCCCe-EEEEEEEEeEEcCCCEEEEcCCC----Cc-----eEeheehhhhcCCCceeeeECCCCEEEEEccccc
Confidence 99999998886 99999999999999999976432 22 6899999999999999999999999999999887
Q ss_pred cccce-eeccCCCCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEc-CCCcEEEEecchhhH
Q 004467 370 ITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHL 447 (752)
Q Consensus 370 ~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~-etge~il~g~GelhL 447 (752)
.+| ||++.. ...+++++.+.++|+++++|+|.++.|.++|.++|++|++|||+|++..+ +|||++|+||||+||
T Consensus 366 --~~GdtL~~~~--~~~~~~~~~~~p~Pv~~~aI~p~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~~l~g~GElHL 441 (731)
T PRK07560 366 --RAGETVVSVE--DMTPFESLKHISEPVVTVAIEAKNPKDLPKLIEVLRQLAKEDPTLVVKINEETGEHLLSGMGELHL 441 (731)
T ss_pred --ccCCEEeCCC--ccccccccccCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCCeEEEcCCHHHH
Confidence 456 998876 55667776534599999999999999999999999999999999999987 899999999999999
Q ss_pred HHHHHHHHhhcCCCcEEEEeCcEEEEEeecccccceeEEeecCCCceEEEEEEEeCChhhHHHHHcCCCCCCCChHHHHH
Q 004467 448 EICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSK 527 (752)
Q Consensus 448 ei~~~rL~~~f~~~vev~~s~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~ 527 (752)
|++++||+++| ++++++++|+|+|||||.+++. .+...++++|++++++++|++++..+.++.+.....++.+.+ .
T Consensus 442 ei~~~rL~~~~--~vev~~~~p~V~yrETI~~~~~-~~~~~~~~~~~~v~l~iePl~~~~~~~~~~~~~~~~~~~~~~-~ 517 (731)
T PRK07560 442 EVITYRIKRDY--GIEVVTSEPIVVYRETVRGKSQ-VVEGKSPNKHNRFYISVEPLEEEVIEAIKEGEISEDMDKKEA-K 517 (731)
T ss_pred HHHHHHHHHHh--CCceEecCCEEEEEEecccCcc-ceEEECCCCceEEEEEEEECCHHHHHHHhcCCcccccchHHH-H
Confidence 99999999999 9999999999999999998863 123457889999999999999998888888876544444444 5
Q ss_pred Hhhh---hcCCchhccCcEEEeccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCcCCCCeeeeEEEEEeeeec
Q 004467 528 ILSE---EFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLH 604 (752)
Q Consensus 528 ~l~~---~~~~~~~~~~~v~~~~P~~~~~n~~~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~ 604 (752)
.|.. +|||+..+++++|+|+ ++|+|+|.+.|+.++++++++|++||+||+++|||||+||+||+|+|+|+++|
T Consensus 518 ~l~~~~~~~g~~~~~~~~i~~~~----~~~~f~~~~~gg~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h 593 (731)
T PRK07560 518 ILREKLIEAGMDKDEAKRVWAIY----NGNVFIDMTKGIQYLNEVMELIIEGFREAMKEGPLAAEPVRGVKVRLHDAKLH 593 (731)
T ss_pred HHHHhhhhcCCchhhhhceeecc----CCeEEEECCCCccCHHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEEeeec
Confidence 5544 8999999999999983 57999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCchHHHHHHHHHHHHHhCCCeEEeeEEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecc
Q 004467 605 ADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPV 684 (752)
Q Consensus 605 ~d~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~ 684 (752)
.|+.++..++|++|+++||++||++|+|+||||||+|+|++|++++|+|+++|++|||+|++++... +.++|+|++|+
T Consensus 594 ~d~~~~~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~g~v~~~L~~rrg~i~~~~~~~--~~~~I~a~vP~ 671 (731)
T PRK07560 594 EDAIHRGPAQVIPAVRNAIFAAMLTAKPTLLEPIQKVDINVPQDYMGAVTREIQGRRGKILDMEQEG--DMAIIEAEAPV 671 (731)
T ss_pred ccccccccchHHHHHHHHHHHHHHhCCCEEeecEEEEEEEecHHHhhHHHHHHHhcCCeeeeeecCC--CcEEEEEEEeh
Confidence 8888888899999999999999999999999999999999999999999999999999999887633 57999999999
Q ss_pred hhhcCchHHhhhhCCCceeeeeEecceeecCCCCCCCchHHHHHHHHHHHhcCCCCCCCCcccccc
Q 004467 685 IESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFED 750 (752)
Q Consensus 685 ~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~d~~~~~~~~~~~~~~~r~rkGl~~~i~~~~~~~~ 750 (752)
+|||||+++|||+|+|+|+|+|+|+||++||++ +++++++++||||||+++||.+++|+|
T Consensus 672 ~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~------~~~~ii~~~r~rKGl~~~~~~~~~~~~ 731 (731)
T PRK07560 672 AEMFGFAGEIRSATEGRALWSTEFAGFEPVPDS------LQLDIVRQIRERKGLKPELPKPEDFLS 731 (731)
T ss_pred HHhcCCchHHHhhCcCCceEEEEeccceeCCHH------HHHHHHHHHHhhCCCCCCCCChhhhcC
Confidence 999999999999999999999999999999975 699999999999999999999999986
No 7
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=1.9e-117 Score=1043.92 Aligned_cols=687 Identities=36% Similarity=0.598 Sum_probs=564.8
Q ss_pred HHHHHHhhcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccch
Q 004467 6 AEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDA 85 (752)
Q Consensus 6 ~~~~~~~~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~ 85 (752)
.++|.++|++++++|||+|+||+|||||||+++|++.+|.+++...|..+++|+.++|++||+||.++.+++.|..
T Consensus 6 ~~~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~---- 81 (720)
T TIGR00490 6 IDKIKELMWKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEY---- 81 (720)
T ss_pred HHHHHHHhhCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEee----
Confidence 6889999999999999999999999999999999999999988777777889999999999999999998876641
Q ss_pred hccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh--CC
Q 004467 86 LKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW--GE 156 (752)
Q Consensus 86 ~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld--g~ 156 (752)
+++++++||||||||.||..++.++++.+|+||+|||+.+|++ .++.+.++|.++|+||+| ++
T Consensus 82 --------~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 153 (720)
T TIGR00490 82 --------EGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLIN 153 (720)
T ss_pred --------cCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccc
Confidence 3458999999999999999999999999999999999999976 456678899999999999 45
Q ss_pred CCcchhhc---cccccCCCCccccCcceeeEechHHH-----HHHHhhccchhhHHHHHHH-c------CCCCChhhHhh
Q 004467 157 NFFDPATK---KWTTKNTGSATCKRGFVQFCYEPIKQ-----IINTCMNDQKDKLWPMLQK-L------GVTMKSEEKDL 221 (752)
Q Consensus 157 ~~~~~~~~---~~~~~~~g~~~~~~~fv~~~l~~i~~-----l~~~~~~~~~~~l~~~l~~-l------~~~l~~~~~~~ 221 (752)
+|...... .+.... ..+.+++...+.+ +.....+.+......+++. + +...+.++++.
T Consensus 154 ~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~ 226 (720)
T TIGR00490 154 ELKLTPQELQERFIKII-------TEVNKLIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYK 226 (720)
T ss_pred hhcCCHHHHHHHHhhhh-------HHHHhhhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHH
Confidence 55444332 222110 0000000000000 0000111222222222220 0 01122222210
Q ss_pred c-hHHHHHHHHhccccchHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCc
Q 004467 222 M-GKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGR 300 (752)
Q Consensus 222 ~-~~~l~~~~~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~ 300 (752)
. ....... +..|+|+.+.|||++++++|+|.+++.++...+|.++...+....+..|++++|++++|||+..+++.|.
T Consensus 227 ~~~~~~~~~-~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ 305 (720)
T TIGR00490 227 YCKEDKQKE-LAKKSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGE 305 (720)
T ss_pred HHHhccHHH-HhhhhhHHHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcE
Confidence 0 0000111 1258999999999999999999987766666666653333333566788999999999999999888887
Q ss_pred eeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeccC
Q 004467 301 FFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNE 379 (752)
Q Consensus 301 ~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~Gl~~~~~~tg-TL~~~ 379 (752)
++|+|||||+|++||.|++.+++ . .++|.+|+.++|.+..++++|.|||||+|.|++++ .+| |||+.
T Consensus 306 -ia~~RV~sGtL~~G~~l~~~~~~----~-----~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~--~~GdtL~~~ 373 (720)
T TIGR00490 306 -VAVGRLYSGTIRPGMEVYIVDRK----A-----KARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKDA--VAGETICTT 373 (720)
T ss_pred -EEEEEEEeCEEcCCCEEEEcCCC----C-----eeEeeEEEEeccCCccCccEECCCCEEEEECcccc--ccCceeecC
Confidence 99999999999999999987533 2 26999999999999999999999999999999987 455 99876
Q ss_pred CCCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEc-CCCcEEEEecchhhHHHHHHHHHhhc
Q 004467 380 KEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDF 458 (752)
Q Consensus 380 ~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~-etge~il~g~GelhLei~~~rL~~~f 458 (752)
.. ...+++++.+.++|+++++|+|.+++|.++|.++|++|++|||+|++..+ +|||++|+||||+|||++++||+++|
T Consensus 374 ~~-~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~aL~~L~~eDPsl~v~~d~etge~il~g~GElHLei~~~rL~~~~ 452 (720)
T TIGR00490 374 VE-NITPFESIKHISEPVVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGELHLEIIVEKIREDY 452 (720)
T ss_pred Cc-ccccCcccccCCCceEEEEEEECCHHHHHHHHHHHHHHHhhCCeEEEEECCCCCCeEEEEccceeHHHHHHHHHHHh
Confidence 51 22345655434599999999999999999999999999999999999987 89999999999999999999999999
Q ss_pred CCCcEEEEeCcEEEEEeecccccceeEEeecCCCceEEEEEEEeCChhhHHHHHcCCCCC-CCChHHHHHHhhhhcCCch
Q 004467 459 MGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGP-RDDPKARSKILSEEFGWDK 537 (752)
Q Consensus 459 ~~~vev~~s~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~ePl~~~~~~~i~~g~~~~-~~~~~~~~~~l~~~~~~~~ 537 (752)
|+++.+++|+|+|||||.+.++. ...+.+++|++++++++|+++++.+.+++|.+.. ....+.+..+| .+||||.
T Consensus 453 --~vev~~~~P~V~YrETi~~~~~~-~~~~~~~~~~~v~l~iePl~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~ 528 (720)
T TIGR00490 453 --GLDVETSPPIVVYRETVTGTSPV-VEGKSPNKHNRFYIVVEPLEESVIQAFKEGKIVDMKMKKKERRRLL-IEAGMDS 528 (720)
T ss_pred --CCceeecCCEEEEEEeccccccc-eEEEcCCCcEEEEEEEEECCcchhhhhhcccccccccchHHHHHHH-HhcCCch
Confidence 99999999999999999998652 1234477899999999999999989999887652 23445566777 4699999
Q ss_pred hccCcEEEeccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCcCCCCeeeeEEEEEeeeecccccccCCCchHH
Q 004467 538 DLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIP 617 (752)
Q Consensus 538 ~~~~~v~~~~P~~~~~n~~~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~d~~~~~~~~~~~ 617 (752)
.+++++|+|+ ++|.|++.+.|++++++|+++|++||+||+++||||||||+||+|+|+|+++|.++.++..++|++
T Consensus 529 ~~~~~i~~~~----~~~~f~~~~~gg~i~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~vds~~~~f~~ 604 (720)
T TIGR00490 529 EEAARVEEYY----EGNLFINMTRGIQYLDETKELILEGFREAMRNGPIAREKCMGVKVKLMDAKLHEDAVHRGPAQVIP 604 (720)
T ss_pred hhhcCEEEec----CCeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCCCcccceEEEEEeeccccccccCccchHHH
Confidence 9999999996 479999999999999999999999999999999999999999999999999998777787889999
Q ss_pred HHHHHHHHHHHhCCCeEEeeEEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhhcCchHHhhhh
Q 004467 618 TARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAA 697 (752)
Q Consensus 618 a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~ 697 (752)
|+++||++||++|+|+||||||.|||+||++++|+|++||++|||+|++++.. ++.++|+|++|++|||||+++||++
T Consensus 605 a~~~a~~~a~~~a~p~LlEPi~~~ei~~p~~~~g~v~~~L~~RRg~i~~~~~~--~~~~~I~A~vP~~e~fgy~~~Lrs~ 682 (720)
T TIGR00490 605 AVRSGIFAAMMQAKPVLLEPYQKVFINVPQDMMGAATREIQNRRGQILEMKQE--GDMVTIIAKAPVAEMFGFAGAIRGA 682 (720)
T ss_pred HHHHHHHHHHHhCCCeEecceEEEEEEccHHHHhHHHHHHhhCCceeeeeccC--CCcEEEEEEEehHHhcCCcHHHHhh
Confidence 99999999999999999999999999999999999999999999999987643 3579999999999999999999999
Q ss_pred CCCceeeeeEecceeecCCCCCCCchHHHHHHHHHHHhcCCCCC
Q 004467 698 TSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 741 (752)
Q Consensus 698 T~G~~~~~~~f~~y~~v~~d~~~~~~~~~~~~~~~r~rkGl~~~ 741 (752)
|+|+|+|+|+|+||++||++ ++++++.++||||||+|+
T Consensus 683 T~G~a~~~~~f~~y~~vp~~------~~~~ii~~~r~rkgl~~~ 720 (720)
T TIGR00490 683 TSGRCLWSTEHAGFELVPQN------LQQEFVMEVRKRKGLKLE 720 (720)
T ss_pred CCCCceEEEEecccccCCHH------HHHHHHHHHHhhcCCCCC
Confidence 99999999999999999975 599999999999999874
No 8
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-118 Score=959.16 Aligned_cols=615 Identities=27% Similarity=0.432 Sum_probs=522.3
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC----ccccCCchhHhHhcceeccceEEEEEeeccchhccccC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG 91 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~----~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~ 91 (752)
.+++|||+|++|+|+|||||+|++||++|.+.. .|+ ...||++++||+|||||+|+.+++.|.
T Consensus 36 ~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~--i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~----------- 102 (721)
T KOG0465|consen 36 LNKIRNIGISAHIDAGKTTLTERMLYYTGRIKH--IGEVRGGGATMDSMELERQRGITIQSAATYFTWR----------- 102 (721)
T ss_pred hhhhcccceEEEEecCCceeeheeeeecceeee--ccccccCceeeehHHHHHhcCceeeeceeeeeec-----------
Confidence 367999999999999999999999999998877 443 359999999999999999999999997
Q ss_pred CCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh--CCCCcchh
Q 004467 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW--GENFFDPA 162 (752)
Q Consensus 92 ~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld--g~~~~~~~ 162 (752)
+++||+||||||+||.-||++||++.|+||+|+||+.||+ ++++++|+|++.|+|||| |++++..+
T Consensus 103 -----~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l 177 (721)
T KOG0465|consen 103 -----DYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTL 177 (721)
T ss_pred -----cceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHH
Confidence 8999999999999999999999999999999999999998 899999999999999999 99999888
Q ss_pred hc---cccccC------CCCccccCcceeeE----------------echHH------------HHHHHhhccchhhHHH
Q 004467 163 TK---KWTTKN------TGSATCKRGFVQFC----------------YEPIK------------QIINTCMNDQKDKLWP 205 (752)
Q Consensus 163 ~~---~~~~~~------~g~~~~~~~fv~~~----------------l~~i~------------~l~~~~~~~~~~~l~~ 205 (752)
+. ++...+ +|.+..+.+.++++ ..+|+ ++++.+++.|+++.+.
T Consensus 178 ~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~ 257 (721)
T KOG0465|consen 178 NQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEM 257 (721)
T ss_pred HHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 74 444332 55544455555432 23443 3566667777777888
Q ss_pred HHHHcCCCCChhhHhhchHHHHHHHH-hccccc----------hHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccc
Q 004467 206 MLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYAN 274 (752)
Q Consensus 206 ~l~~l~~~l~~~~~~~~~~~l~~~~~-~~~~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~ 274 (752)
||+. ..++...+ ..+++++.+ +.|+|+ +++|||++++|||+|.|...+.+.+ .. ..++ .
T Consensus 258 fLee--~~ps~~~l---~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~k--e~-~~~e--k 327 (721)
T KOG0465|consen 258 FLEE--EEPSAQQL---KAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNK--ET-NSKE--K 327 (721)
T ss_pred Hhcc--CCCCHHHH---HHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhccccccc--CC-CCcc--c
Confidence 8876 55555555 244555543 688997 8999999999999999987655431 11 1111 1
Q ss_pred cccccCCC-CCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeec
Q 004467 275 AIRNCDPN-GPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVE 353 (752)
Q Consensus 275 ~i~~~~~~-~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ 353 (752)
....+..+ .||+++.||+..++. |. ++|+|||+|+|++||.+| |.+++++ +|+.+|+.|+++..++|+
T Consensus 328 v~l~~~~d~~Pfv~LAFKle~g~f-Gq-LTyvRvYqG~L~kG~~iy----N~rtgKK-----vrv~RL~rmHa~~medV~ 396 (721)
T KOG0465|consen 328 VTLSPSRDKDPFVALAFKLEEGRF-GQ-LTYVRVYQGTLSKGDTIY----NVRTGKK-----VRVGRLVRMHANDMEDVN 396 (721)
T ss_pred eEeccCCCCCceeeeEEEeeecCc-cc-eEEEEEeeeeecCCcEEE----ecCCCce-----eEhHHHhHhcccccchhh
Confidence 12222233 399999999999887 77 999999999999999999 6667765 799999999999999999
Q ss_pred cccCCCEEEEeccccccccce-eeccCCCCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEc
Q 004467 354 DVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE 432 (752)
Q Consensus 354 ea~AGdIvai~Gl~~~~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~ 432 (752)
++.|||||++.|++- .+| |+++... ....+..+-+| +||++++|+|.+..|.+++.+||.++.+|||+|++..|
T Consensus 397 ~v~AG~I~alfGidc---asGDTftd~~~-~~~~m~si~vP-ePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv~~d 471 (721)
T KOG0465|consen 397 EVLAGDICALFGIDC---ASGDTFTDKQN-LALSMESIHIP-EPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSLD 471 (721)
T ss_pred hhhccceeeeecccc---ccCceeccCcc-ccceeeeeecC-CCeeEEEecccccccHHHHHHHHHhhcccCCceEEEec
Confidence 999999999999944 567 9998741 45566677665 99999999999999999999999999999999999998
Q ss_pred -CCCcEEEEecchhhHHHHHHHHHhhcCCCcEEEEeCcEEEEEeecccccceeEEeecCCCceEEEEEEEeCChhhHHHH
Q 004467 433 -ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAI 511 (752)
Q Consensus 433 -etge~il~g~GelhLei~~~rL~~~f~~~vev~~s~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~ePl~~~~~~~i 511 (752)
|++|++|+|||||||||..+||+++| |+++.+|+|+|+|||||..++.. .+.|++
T Consensus 472 ~E~kqTvIsGMGELHLEIy~eRl~rEy--~~~~~~Gkp~VayRETi~~~~~f------~~~hKk---------------- 527 (721)
T KOG0465|consen 472 PEMKQTVISGMGELHLEIYVERLVREY--KVDAELGKPQVAYRETITSPVEF------DYTHKK---------------- 527 (721)
T ss_pred cccccchhhccchhhHHHHHHHHHHHh--CCccccCCceeeehhhcCCcccc------eeeecc----------------
Confidence 99999999999999999999999999 99999999999999999987632 344555
Q ss_pred HcCCCCCCCChHHHHHHhhhhcCCchhccCcEE-EeccCCCC---CceEEecccCccchHHHHHHHHHHHHHHHHcCCcC
Q 004467 512 DDGRIGPRDDPKARSKILSEEFGWDKDLAKKIW-CFGPETTG---PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALA 587 (752)
Q Consensus 512 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~-~~~P~~~~---~n~~~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~ 587 (752)
|+|+. +||+. +. .++|.+.+ ...|.+.+.|+..+.+|++++++||.++++.|||.
T Consensus 528 qSgG~--------------gqy~k-------v~g~~epl~~~~~~~~eF~~~~~g~~~P~~f~pa~ekg~~e~~~~G~L~ 586 (721)
T KOG0465|consen 528 QSGGA--------------GQYGK-------VEGVIEPLPPGSNEKFEFSDEIVGGNVPKQFIPAVEKGFEEIVAKGPLI 586 (721)
T ss_pred ccCCC--------------ccccc-------eeeEEeecCCCCCceEEEEecccCCCCchhHHHHHHHHHHHHHhcCCcc
Confidence 66664 56765 33 37776554 24788899999999999999999999999999999
Q ss_pred CCCeeeeEEEEEeeeecc-cccccCCCchHHHHHHHHHHHHHhCCCeEEeeEEEEEEEecCcccccHHHHhhhhcccccc
Q 004467 588 EENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFE 666 (752)
Q Consensus 588 ~~pv~~v~v~l~d~~~~~-d~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~ 666 (752)
|+|+.|++|.|.|+.+|. ||++.+ |+.|++.|+++||.+|+|+||||||.|+|++|+|++|.|+++|++|+|.|.+
T Consensus 587 ghpl~~~r~~l~Dga~h~vds~ela---f~~at~~a~r~a~~~a~p~iLEPIM~Vevt~P~EfqG~Vi~~L~kR~a~I~~ 663 (721)
T KOG0465|consen 587 GHPLSNLRIVLQDGAHHPVDSSELA---FMKATRNAFREAFKRAPPRILEPIMNVEVTTPEEFQGTVIGDLNKRKAQITG 663 (721)
T ss_pred CCcccceEEEEecCCcCcccccHHH---HHHHHHHHHHHHHHhCCcceeecceeeEEecchhhhhhhhhhhhhcccEEec
Confidence 999999999999999998 766664 6689999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcEEEEEEecchhhcCchHHhhhhCCCceeeeeEecceeecCCCCCCCchHHHHHHH
Q 004467 667 EMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVA 730 (752)
Q Consensus 667 ~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~d~~~~~~~~~~~~~ 730 (752)
.+..+ +.++|.|.|||.+||||+++|||+|+|+|.|+|+|++|++||.+. +.+++.
T Consensus 664 ~d~~~--~~~ti~A~VPL~~mfgYss~LRslTqGkgeftMEys~y~p~~~~v------q~~~~~ 719 (721)
T KOG0465|consen 664 IDSSE--DYKTIKAEVPLNEMFGYSSELRSLTQGKGEFTMEYSRYSPVPPDV------QDQLVH 719 (721)
T ss_pred ccCCC--ceEEEEecccHHHHhhhhhhhhhhhcCcceEEEeecccCCCchHH------HHHhhc
Confidence 87655 589999999999999999999999999999999999999999984 666553
No 9
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.4e-111 Score=918.04 Aligned_cols=712 Identities=37% Similarity=0.659 Sum_probs=583.6
Q ss_pred hcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCC
Q 004467 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGE 92 (752)
Q Consensus 13 ~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~ 92 (752)
.+..+.|||||+++|||||||||+|+|+..+|.|+++.+|+.++||++++||.||||++|+.++...+
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~------------ 70 (887)
T KOG0467|consen 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHK------------ 70 (887)
T ss_pred CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccC------------
Confidence 34568999999999999999999999999999999999999999999999999999999999997775
Q ss_pred CCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH------------------------------------
Q 004467 93 RNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC------------------------------------ 136 (752)
Q Consensus 93 ~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~------------------------------------ 136 (752)
+|.+||||+|||+||.+||.+|.+.||+|+++||++||++
T Consensus 71 ----~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ 146 (887)
T KOG0467|consen 71 ----DYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQ 146 (887)
T ss_pred ----ceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChH
Confidence 8999999999999999999999999999999999999998
Q ss_pred ------------------------------------------------------------------HHHHHhCCCHHHHH
Q 004467 137 ------------------------------------------------------------------MYASKFGVDESKMM 150 (752)
Q Consensus 137 ------------------------------------------------------------------~~~~~~~~p~~~~i 150 (752)
.++++++.......
T Consensus 147 ea~~~l~r~i~~vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~ 226 (887)
T KOG0467|consen 147 EAYEHLLRVIEQVNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALL 226 (887)
T ss_pred HHHHHHHHHHHHhhhHHHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhhh
Confidence 45556666666666
Q ss_pred HHhhCCCCcchhhccccccCCCCccccCcceeeEechHHHHHHHhh-ccchhhHHHHHHHcCCCCChhhHhhchHHHHHH
Q 004467 151 ERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCM-NDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKR 229 (752)
Q Consensus 151 nkldg~~~~~~~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~-~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~ 229 (752)
.-|||++|.+..+++.-... +.....+.|++++++++|.+|+..+ ..+.+.+++..+.+++.+...++ +.++.+
T Consensus 227 k~lwgd~y~~~ktk~I~~~~-~~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~----~~ll~~ 301 (887)
T KOG0467|consen 227 KFLWGDRYIDPKTKRICEGK-KLKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDL----RNLLDA 301 (887)
T ss_pred hhhccceeecchhhhhhccc-CcccCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHH----HHHHHH
Confidence 66777777777665333211 1112368999999999999999654 45678899999999999877766 488899
Q ss_pred HHhccccchHHHHHHHHhcCCCchhhhhhhhhcccCCCC---cccccccccccCCCCCeEEEEEEEeecCCCC----cee
Q 004467 230 VMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPL---DDQYANAIRNCDPNGPLMLYVSKMIPASDKG----RFF 302 (752)
Q Consensus 230 ~~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~---~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g----~~v 302 (752)
+++.|+|..++.+-+.+.++|+|.+.+..+...++.-+. +-+...+++.|++++|.++||+|+...+.+. +++
T Consensus 302 im~~wLPls~avll~a~~~lp~pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~~l~ 381 (887)
T KOG0467|consen 302 IMSTWLPLSDAVLLTVVYKLPDPIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQSRLL 381 (887)
T ss_pred HHHhhcccccchHHHHHHhcCCHHHHHHHhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchhhhe
Confidence 999999999999999999999999998888777665311 1123345666889999999999998765433 358
Q ss_pred EEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEeccccccccceeeccCCCC
Q 004467 303 AFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEV 382 (752)
Q Consensus 303 ~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~Gl~~~~~~tgTL~~~~~~ 382 (752)
+++||||||++.|+.+++.++. +...+.+...+|.++|+++|++..+.+++++|++++|.| .....+.+|||+..
T Consensus 382 ~~ari~sgTlr~g~~v~v~~pd--~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g-~~~vlks~TL~s~~-- 456 (887)
T KOG0467|consen 382 AFARIFSGTLRVGQVVYVLGPD--PLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGG-AGIVLKSATLCSKV-- 456 (887)
T ss_pred eeeeeccCceeeccEeeecCCC--CCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEecc-cceEeccceecccC--
Confidence 9999999999999999998763 333334566899999999999999999999999999999 66667888999985
Q ss_pred CccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEcCCCcEEEEecchhhHHHHHHHHHhhcCCCc
Q 004467 383 DAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGA 462 (752)
Q Consensus 383 ~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~etge~il~g~GelhLei~~~rL~~~f~~~v 462 (752)
.+.++....|...|.+.++|+|.+|.+.++|.++|+.|...||++++..+++||+++...||+|||.|+.+|++ |+ ++
T Consensus 457 ~~~p~~~~~f~~tp~vrvaiep~~p~em~~L~~glkll~~adp~v~i~v~~~gEhvl~~aGevhlerc~kDL~e-fa-~i 534 (887)
T KOG0467|consen 457 PCGPNLVVNFQITPIVRVAIEPDDPDEMDKLVEGLKLLNQADPFVKIRVEENGEHVLVTAGEVHLERCLKDLKE-FA-KI 534 (887)
T ss_pred CCcceeeeeeeeeeEEEEEeecCChHHhHHHHHHHHhhcccchhhHHHHhhccceeeeeccHHHHHHHHHHHhh-hh-ce
Confidence 44454446777899999999999999999999999999999999999989999999999999999999999999 98 99
Q ss_pred EEEEeCcEEEEEeeccccccee-------EEeecCCCceEEEEEEEeCChhhHHHHHcCCCC------------CCCC-h
Q 004467 463 EIIKSDPVVSFRETVLEKSCRT-------VMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIG------------PRDD-P 522 (752)
Q Consensus 463 ev~~s~p~V~yrETi~~~~~~~-------~~~~~~~~~~~i~~~~ePl~~~~~~~i~~g~~~------------~~~~-~ 522 (752)
++++|+|.|+||||+.+.+... .....+.+.-++.+++-|+...+.+.+...... +.++ .
T Consensus 535 ~i~vSeP~vpfrET~~e~s~l~~~~~I~~~~~~~~~~~~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~~i~e~~ 614 (887)
T KOG0467|consen 535 EISVSEPLVPFRETIIEDSDLLANLSIGQETKCLPRGQLKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQVPIDESQ 614 (887)
T ss_pred EEEecCCccchhhhccccchhhhhhhcCcccccccccceeEEeeecccccceeccccccchhccchhccccccccccccc
Confidence 9999999999999996654211 111122233356666777653333221110000 0000 0
Q ss_pred H-------HHHHHhhhhcC--Cc----hhccCcEEEeccCCCCCceEEecccC--------ccchHHHHHHHHHHHHHHH
Q 004467 523 K-------ARSKILSEEFG--WD----KDLAKKIWCFGPETTGPNMVVDMCKG--------VQYLNEIKDSVVAGFQWAS 581 (752)
Q Consensus 523 ~-------~~~~~l~~~~~--~~----~~~~~~v~~~~P~~~~~n~~~~~~~~--------~~~~~~~~~~i~~G~~~a~ 581 (752)
+ .....+...+. .+ ..+..++|+|||.+.|+|+|.+.... ..+...+-+++..||+.++
T Consensus 615 k~~~~e~ls~~~s~~~~~~~ek~~e~~~~~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~l~~~ivsgfql~~ 694 (887)
T KOG0467|consen 615 KGSFEENLSLLISLERLYEFEKPREKLGSFKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVARLSESIVSGFQLAT 694 (887)
T ss_pred cccccccccHHHHHHHHhhccccHHHHHHHHhhhhcccccccCCceeeccccchhhhhhhcchHHHHHHHHHhhhHhhhh
Confidence 0 00111111111 10 11235688999999999999986532 2223336689999999999
Q ss_pred HcCCcCCCCeeeeEEEEEeeeecc-cccccCCCchHHHHHHHHHHHHHhCCCeEEeeEEEEEEEecCcccccHHHHhhhh
Q 004467 582 KEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQK 660 (752)
Q Consensus 582 ~~Gpl~~~pv~~v~v~l~d~~~~~-d~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~r 660 (752)
..||||.||++|++|.+..+.... ++...-.||++.|++.+||+|++..+|||+.|||.|+|++..+++|+||++|++|
T Consensus 695 ~sGPlc~Ep~~g~~~~~es~~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVlskR 774 (887)
T KOG0467|consen 695 SSGPLCNEPMQGICFVLESGSAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLSKR 774 (887)
T ss_pred ccCcccccCcccEEEEeeccCcccccccCCcCceeHHHHHHHHHHHHhcCCHHHhhhheeeeeeehHHHhhhHHhhhhhh
Confidence 999999999999999998854433 2222223799999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCcEEEEEEecchhhcCchHHhhhhCCCceeeeeEecceeecCCCCCCC----------------chH
Q 004467 661 RGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEP----------------GTQ 724 (752)
Q Consensus 661 rg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~d~~~~----------------~~~ 724 (752)
+|+|+++++.+||+.|.|+|++||.|+|||+.+||..|+|.|++|+.|+||+.++.||||- +|+
T Consensus 775 ~gkVLsEem~EgT~~F~V~aliPVvESFgFadeiRK~TSG~A~pQLvFShwEvId~DPFWvPtTEEEleefGekADs~N~ 854 (887)
T KOG0467|consen 775 HGKVLSEEMKEGTGFFIVTALIPVVESFGFADEIRKGTSGAASPQLVFSHWEVIDEDPFWVPTTEEELEEFGEKADSENI 854 (887)
T ss_pred cchhhhhhhhCCCCcEEEEEEeeeeccccHHHHHhhccccccchhhhccccEEecCCCccCCCcHHHHHHhhhcccchhH
Confidence 9999999999999999999999999999999999999999999999999999999999982 689
Q ss_pred HHHHHHHHHHhcCC--CCCCCCcccccccC
Q 004467 725 AAQLVADIRKRKGL--KEQMTPLSEFEDKL 752 (752)
Q Consensus 725 ~~~~~~~~r~rkGl--~~~i~~~~~~~~~l 752 (752)
|++||+.+|||||| +||||+++|+|++|
T Consensus 855 ArkYMdaVRRRKGLfVEEkIVE~AEKQRTL 884 (887)
T KOG0467|consen 855 ARKYMDAVRRRKGLFVEEKIVEHAEKQRTL 884 (887)
T ss_pred HHHHHHHHHhhcCCchHHHHhhhHHhhccc
Confidence 99999999999999 99999999999986
No 10
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=6.3e-108 Score=961.56 Aligned_cols=616 Identities=29% Similarity=0.461 Sum_probs=516.0
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC----ccccCCchhHhHhcceeccceEEEEEeeccchhccccC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG 91 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~----~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~ 91 (752)
+++||||+|+||+|||||||+++|++.+|.+++ .|+ .+++|++++|++||||++++.+++.|.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~--~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~----------- 71 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHK--IGEVHDGAATMDWMEQEQERGITITSAATTCFWK----------- 71 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccc--cccccCCccccCCChhHhhcCCCccceeEEEEEC-----------
Confidence 578999999999999999999999999998865 332 479999999999999999999999996
Q ss_pred CCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh--CCCCcchh
Q 004467 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW--GENFFDPA 162 (752)
Q Consensus 92 ~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld--g~~~~~~~ 162 (752)
++++||||||||.||..++.++++.+|+||+||||.+|++ .++.+.++|.++++|||| ++++.+.+
T Consensus 72 -----~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~ 146 (691)
T PRK12739 72 -----GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSV 146 (691)
T ss_pred -----CEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHH
Confidence 8999999999999999999999999999999999999976 667789999999999999 44443333
Q ss_pred hc---ccccc------CCCCccccCc-----------------------------ceeeEechHHHHHHHhhccchhhHH
Q 004467 163 TK---KWTTK------NTGSATCKRG-----------------------------FVQFCYEPIKQIINTCMNDQKDKLW 204 (752)
Q Consensus 163 ~~---~~~~~------~~g~~~~~~~-----------------------------fv~~~l~~i~~l~~~~~~~~~~~l~ 204 (752)
.. .+... |.+....+.+ +.++++++..++++.+++.++++++
T Consensus 147 ~~i~~~l~~~~~~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle 226 (691)
T PRK12739 147 EQIKDRLGANAVPIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELME 226 (691)
T ss_pred HHHHHHhCCCceeEEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHH
Confidence 21 11110 0111001111 1122334556788999999999999
Q ss_pred HHHHHcCCCCChhhHhhchHHHHHHHH-hccccc----------hHHHHHHHHhcCCCchhhhhhhhhcccCCCCccccc
Q 004467 205 PMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYA 273 (752)
Q Consensus 205 ~~l~~l~~~l~~~~~~~~~~~l~~~~~-~~~~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~ 273 (752)
+|++. ..++.+++. ..+.+.+. ..|+|+ ++.|||+|++++|+|.+++..+....+.+ .
T Consensus 227 ~yl~~--~~~~~~~l~---~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~------~ 295 (691)
T PRK12739 227 KYLEG--EEITEEEIK---AAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTE------E 295 (691)
T ss_pred HHhcc--CCCCHHHHH---HHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCC------c
Confidence 99987 556666652 23333333 478887 69999999999999987655433222111 2
Q ss_pred ccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeec
Q 004467 274 NAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVE 353 (752)
Q Consensus 274 ~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ 353 (752)
...+.|++++||+++|||++.+++.|+ ++|+|||||+|++||.|++ .+.+++ +++.+||.++|++..+++
T Consensus 296 ~~~~~~~~~~pl~a~VfK~~~d~~~G~-i~~~RV~sGtL~~g~~v~~----~~~~~~-----~~v~~l~~~~g~~~~~v~ 365 (691)
T PRK12739 296 EIERPASDDEPFAALAFKIMTDPFVGR-LTFFRVYSGVLESGSYVLN----TTKGKK-----ERIGRLLQMHANKREEIK 365 (691)
T ss_pred ceeeccCCCCCeEEEEEEeeeCCCCCe-EEEEEEeeeEEcCCCEEEe----CCCCce-----EEecceEEEecCCccccc
Confidence 456778999999999999999999887 9999999999999999984 333332 699999999999999999
Q ss_pred cccCCCEEEEeccccccccce-eeccCCCCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEc
Q 004467 354 DVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE 432 (752)
Q Consensus 354 ea~AGdIvai~Gl~~~~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~ 432 (752)
++.|||||+|.|++++ ++| ||++.. .+..++++.++ +|+++++|+|.++.|.++|.+||++|.++||+|++..+
T Consensus 366 ~~~aGdI~~i~gl~~~--~~gdtl~~~~--~~~~l~~~~~~-~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~v~~~ 440 (691)
T PRK12739 366 EVYAGDIAAAVGLKDT--TTGDTLCDEK--APIILESMEFP-EPVISLAVEPKTKADQDKMGLALQKLAEEDPTFRVETD 440 (691)
T ss_pred ccCCCCEEEEeCCCcc--cCCCEEeCCC--CccccCCCCCC-CceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEc
Confidence 9999999999999986 677 998876 55677788775 99999999999999999999999999999999999987
Q ss_pred -CCCcEEEEecchhhHHHHHHHHHhhcCCCcEEEEeCcEEEEEeecccccceeEEeecCCCceEEEEEEEeCChhhHHHH
Q 004467 433 -ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAI 511 (752)
Q Consensus 433 -etge~il~g~GelhLei~~~rL~~~f~~~vev~~s~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~ePl~~~~~~~i 511 (752)
+|||++|+||||||||+|++||+++| ++++++|+|+|+|||||.+.++ ..++|++
T Consensus 441 ~etge~il~g~GelHLei~~~rL~~~f--~vev~~s~p~V~yrEti~~~~~------~~~~~~~---------------- 496 (691)
T PRK12739 441 EETGQTIISGMGELHLDIIVDRMKREF--KVEANVGAPQVAYRETITKSVE------AEGKYKK---------------- 496 (691)
T ss_pred CCCCCEEEEEecHHHHHHHHHHHHHHh--CCeeEecCCEEEEeeccCCccc------ccceecc----------------
Confidence 89999999999999999999999999 9999999999999999998763 2344433
Q ss_pred HcCCCCCCCChHHHHHHhhhhcCCchhccCcEEE-eccCCCC-CceEEecccCccchHHHHHHHHHHHHHHHHcCCcCCC
Q 004467 512 DDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWC-FGPETTG-PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEE 589 (752)
Q Consensus 512 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~-~~P~~~~-~n~~~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~~ 589 (752)
++|+. ++|+ .+|. ++|.+.| ++.|.+++.|+.++++|+++|++||+||+++|||||+
T Consensus 497 ~s~g~--------------~~~~-------~v~l~~~P~~~~~~~~~~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g~ 555 (691)
T PRK12739 497 QSGGR--------------GQYG-------DVWIEFEPNEEGKGFEFVNKIVGGVIPKEYIPAVEKGLEEAMKNGVLAGY 555 (691)
T ss_pred ccCCC--------------Ccee-------EEEEEEEECCCCCCcEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcCCC
Confidence 33331 2333 2554 7776554 6889999999999999999999999999999999999
Q ss_pred CeeeeEEEEEeeeecc-cccccCCCchHHHHHHHHHHHHHhCCCeEEeeEEEEEEEecCcccccHHHHhhhhcccccccc
Q 004467 590 NMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEM 668 (752)
Q Consensus 590 pv~~v~v~l~d~~~~~-d~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~ 668 (752)
||+||+|+|+|+++|. |+. .++|+.|+++||++|+++|+|+||||||+|+|+||++++|+|+++|++|||+|++++
T Consensus 556 pv~~v~v~l~d~~~h~~~s~---~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~ 632 (691)
T PRK12739 556 PMVDVKATLYDGSYHDVDSS---ELAFKIAASMALKEAAKKAGPVILEPIMKVEVVTPEEYMGDVIGDLNRRRGQIQGME 632 (691)
T ss_pred ceeeEEEEEEEeccCCCCCc---HHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEEchHhhhhHHHHHHhcCCeEECcc
Confidence 9999999999999996 443 346779999999999999999999999999999999999999999999999999988
Q ss_pred ccCCCCcEEEEEEecchhhcCchHHhhhhCCCceeeeeEecceeecCCCCCCCchHHHHHHHH
Q 004467 669 QRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVAD 731 (752)
Q Consensus 669 ~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~d~~~~~~~~~~~~~~ 731 (752)
+.++ .+.|+|++|++|+|||+++||++|+|+|+|+|+|+||++||++. +++++++
T Consensus 633 ~~~~--~~~i~a~vP~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~~------~~~ii~~ 687 (691)
T PRK12739 633 ARGG--AQIVKAFVPLSEMFGYATDLRSATQGRATFSMEFDHYEEVPKNI------AEEIIKK 687 (691)
T ss_pred ccCC--cEEEEEEeCHHHhhccHHHHHhhccCceEEEEEeccceECCHHH------HHHHHHH
Confidence 7654 57899999999999999999999999999999999999999763 7777654
No 11
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=9.8e-108 Score=959.08 Aligned_cols=616 Identities=29% Similarity=0.456 Sum_probs=513.5
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC----ccccCCchhHhHhcceeccceEEEEEeeccchhccccC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG 91 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~----~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~ 91 (752)
+++||||+|+||+|||||||+++|++.+|.+++ .|+ .+++|++++|++||+|++++.+++.|+
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~--~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~----------- 73 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHK--IGEVHDGAATMDWMEQEQERGITITSAATTCFWK----------- 73 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccc--cccccCCcccCCCCHHHHhCCCCEeccEEEEEEC-----------
Confidence 578999999999999999999999999998865 433 479999999999999999999999996
Q ss_pred CCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh--CCCCcchh
Q 004467 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW--GENFFDPA 162 (752)
Q Consensus 92 ~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld--g~~~~~~~ 162 (752)
++++||||||||.||..++.+|++.+|+||+||||.+|++ .++.+.++|.++++|||| +++++..+
T Consensus 74 -----~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~ 148 (693)
T PRK00007 74 -----DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVV 148 (693)
T ss_pred -----CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHH
Confidence 7999999999999999999999999999999999999987 778889999999999999 44554333
Q ss_pred hc---ccccc------CCCCccccCccee-----------------------------eEechHHHHHHHhhccchhhHH
Q 004467 163 TK---KWTTK------NTGSATCKRGFVQ-----------------------------FCYEPIKQIINTCMNDQKDKLW 204 (752)
Q Consensus 163 ~~---~~~~~------~~g~~~~~~~fv~-----------------------------~~l~~i~~l~~~~~~~~~~~l~ 204 (752)
.. ++... +.++...+.++++ ++.++..++++.+++.++++++
T Consensus 149 ~~i~~~l~~~~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle 228 (693)
T PRK00007 149 EQIKDRLGANPVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELME 228 (693)
T ss_pred HHHHHHhCCCeeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 21 11111 0111011111111 1223445678889999999999
Q ss_pred HHHHHcCCCCChhhHhhchHHHHHHHH-hccccc----------hHHHHHHHHhcCCCchhhhhhhhhcccCCCC-cccc
Q 004467 205 PMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPL-DDQY 272 (752)
Q Consensus 205 ~~l~~l~~~l~~~~~~~~~~~l~~~~~-~~~~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~-~~~~ 272 (752)
+|++. ..++.+++. ..+.++++ ..|+|+ ++.|||+|++++|+|.+++... |.. ..+.
T Consensus 229 ~yle~--~~l~~~~l~---~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~------~~~~~~~~ 297 (693)
T PRK00007 229 KYLEG--EELTEEEIK---AALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIK------GILPDGEE 297 (693)
T ss_pred HHhCc--CCCCHHHHH---HHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhccccc------ccCCCccc
Confidence 99985 777777663 33444443 478887 4899999999999998754321 111 1112
Q ss_pred cccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeee
Q 004467 273 ANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETV 352 (752)
Q Consensus 273 ~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V 352 (752)
....+.|++++||+++|||+..+++.|+ ++|+|||||+|++||.|++ .+.++. +++.+||.++|.+..++
T Consensus 298 ~~~~~~~~~~~~l~a~VfK~~~d~~~G~-ia~~RV~sGtl~~g~~v~~----~~~~~~-----eki~~l~~~~g~~~~~v 367 (693)
T PRK00007 298 EEVERKASDDEPFSALAFKIMTDPFVGK-LTFFRVYSGVLESGSYVLN----STKGKK-----ERIGRILQMHANKREEI 367 (693)
T ss_pred cceeecCCCCCCeEEEEEEeeecCCCCc-EEEEEEeeeEEcCCCEEEe----CCCCce-----eEeceeEEeccCCcccc
Confidence 3456778999999999999999999887 9999999999999999984 333332 69999999999999999
Q ss_pred ccccCCCEEEEeccccccccce-eeccCCCCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEE
Q 004467 353 EDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI 431 (752)
Q Consensus 353 ~ea~AGdIvai~Gl~~~~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~ 431 (752)
++|.|||||++.|++++ .+| ||++.+ .+..++++.++ +|+++++|+|.++.|.++|.++|++|.+|||+|++..
T Consensus 368 ~~~~aGdI~~i~gl~~~--~~GdtL~~~~--~~~~l~~~~~~-~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~ 442 (693)
T PRK00007 368 KEVRAGDIAAAVGLKDT--TTGDTLCDEK--NPIILESMEFP-EPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVST 442 (693)
T ss_pred cccCCCcEEEEeCCccC--CcCCEeeCCC--CccccCCCCCC-CceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEE
Confidence 99999999999999986 567 998876 55667777775 9999999999999999999999999999999999998
Q ss_pred c-CCCcEEEEecchhhHHHHHHHHHhhcCCCcEEEEeCcEEEEEeecccccceeEEeecCCCceEEEEEEEeCChhhHHH
Q 004467 432 E-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEA 510 (752)
Q Consensus 432 ~-etge~il~g~GelhLei~~~rL~~~f~~~vev~~s~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~ePl~~~~~~~ 510 (752)
+ +|||++|+||||||||+|++||+++| |+++++++|+|+|||||.++++ ..++|++
T Consensus 443 ~~etge~~l~g~GelHLei~~~rL~~~~--~vev~~s~p~V~yrETi~~~~~------~~~~~~~--------------- 499 (693)
T PRK00007 443 DEETGQTIIAGMGELHLDIIVDRMKREF--KVEANVGKPQVAYRETIRKKVE------VEGKFVK--------------- 499 (693)
T ss_pred cCCCCCEEEEEecHHhHHHHHHHHHHHh--CCeeEecCCEEEEeecccCccc------cCccccc---------------
Confidence 7 89999999999999999999999999 9999999999999999998753 2344433
Q ss_pred HHcCCCCCCCChHHHHHHhhhhcCCchhccCcEEE-eccCCCC-CceEEecccCccchHHHHHHHHHHHHHHHHcCCcCC
Q 004467 511 IDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWC-FGPETTG-PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAE 588 (752)
Q Consensus 511 i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~-~~P~~~~-~n~~~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~ 588 (752)
++|+. ++|+- +|. ++|...+ ++.|.+.+.++.++++|+++|++||+||+++|||||
T Consensus 500 -~~gg~--------------~~~~~-------v~l~~eP~~~~~~~~f~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g 557 (693)
T PRK00007 500 -QSGGR--------------GQYGH-------VVIEFEPNEPGKGYEFVNKIVGGVIPKEYIPAVDKGIQEAMESGVLAG 557 (693)
T ss_pred -ccCCC--------------CceEE-------EEEEEEeCCCCCCcEEeecccCCcCcHHHHHHHHHHHHHHHhcCCcCC
Confidence 33331 23332 554 6665443 577888888899999999999999999999999999
Q ss_pred CCeeeeEEEEEeeeecc-cccccCCCchHHHHHHHHHHHHHhCCCeEEeeEEEEEEEecCcccccHHHHhhhhccccccc
Q 004467 589 ENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEE 667 (752)
Q Consensus 589 ~pv~~v~v~l~d~~~~~-d~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~ 667 (752)
+||+||+|+|+|+++|. |+++ .+|..|+++||++|+++|+|+||||||+|+|+||++++|+|+++|++|||+|.++
T Consensus 558 ~pv~~v~v~l~d~~~~~~ds~~---~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~ 634 (693)
T PRK00007 558 YPVVDVKVTLFDGSYHDVDSSE---MAFKIAGSMAFKEAAKKANPVLLEPIMKVEVVTPEEYMGDVIGDLNSRRGQIEGM 634 (693)
T ss_pred CceeeEEEEEEecccCCCCCcH---HHHHHHHHHHHHHHHHHCCCEEecCcEEEEEEechhhhhhHHHHHHhCCCeEecc
Confidence 99999999999999996 5543 4577899999999999999999999999999999999999999999999999988
Q ss_pred cccCCCCcEEEEEEecchhhcCchHHhhhhCCCceeeeeEecceeecCCCCCCCchHHHHHHHH
Q 004467 668 MQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVAD 731 (752)
Q Consensus 668 ~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~d~~~~~~~~~~~~~~ 731 (752)
++.. +.+.|+|++|++|+|||+++||++|+|+|+|+|+|+||++||++. +++++.+
T Consensus 635 ~~~~--~~~~i~a~vP~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~------~~~~~~~ 690 (693)
T PRK00007 635 EDRG--GAKVIRAEVPLSEMFGYATDLRSMTQGRATYSMEFDHYEEVPKNV------AEEIIKK 690 (693)
T ss_pred cccC--CcEEEEEEcCHHHhhccHHHHHhhcCCceEEEEEeceeeECCHHH------HHHHHHH
Confidence 7644 478999999999999999999999999999999999999999874 6666543
No 12
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=1.5e-105 Score=942.24 Aligned_cols=617 Identities=28% Similarity=0.421 Sum_probs=510.2
Q ss_pred ccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC----ccccCCchhHhHhcceeccceEEEEEeeccchhcccc
Q 004467 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYK 90 (752)
Q Consensus 15 ~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~----~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~ 90 (752)
.+++||||+|+||+|||||||+++|++.+|.+++ .|+ .+++|++++||+||||++++..++.|+
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~--~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~---------- 73 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHK--IGEVHDGAATMDWMEQEKERGITITSAATTVFWK---------- 73 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccc--cccccCCccccCCCHHHHhcCCCEecceEEEEEC----------
Confidence 4578999999999999999999999999998866 333 379999999999999999999999996
Q ss_pred CCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh--CCCCcch
Q 004467 91 GERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW--GENFFDP 161 (752)
Q Consensus 91 ~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld--g~~~~~~ 161 (752)
+++++|+|||||.||..++.++++.+|+||+|||+.+|++ .++.+.++|.++++||+| ++++.+.
T Consensus 74 ------~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~ 147 (689)
T TIGR00484 74 ------GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRV 147 (689)
T ss_pred ------CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHH
Confidence 7999999999999999999999999999999999999876 667788999999999999 4454443
Q ss_pred hhc---cccccC------CCCccccCcceee----------------------------EechHHHHHHHhhccchhhHH
Q 004467 162 ATK---KWTTKN------TGSATCKRGFVQF----------------------------CYEPIKQIINTCMNDQKDKLW 204 (752)
Q Consensus 162 ~~~---~~~~~~------~g~~~~~~~fv~~----------------------------~l~~i~~l~~~~~~~~~~~l~ 204 (752)
+.. .+...+ .+......++++. +.++..++++++++.++++++
T Consensus 148 ~~~i~~~l~~~~~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle 227 (689)
T TIGR00484 148 VNQIKQRLGANAVPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELME 227 (689)
T ss_pred HHHHHHHhCCCceeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 331 222110 1111111122221 112334678888999999999
Q ss_pred HHHHHcCCCCChhhHhhchHHHHHHHH-hccccc----------hHHHHHHHHhcCCCchhhhhhhhhcccCCCCccccc
Q 004467 205 PMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYA 273 (752)
Q Consensus 205 ~~l~~l~~~l~~~~~~~~~~~l~~~~~-~~~~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~ 273 (752)
+|++. ..++.+++. ..+.++++ ..++|+ ++.|||+|++++|+|.+++..... ..+...
T Consensus 228 ~yle~--~~~~~~~l~---~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~------~~~~~~ 296 (689)
T TIGR00484 228 KYLEG--EELTIEEIK---NAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGI------DPDTEK 296 (689)
T ss_pred HHhCC--CCCCHHHHH---HHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhccccccc------CCCCCc
Confidence 99985 667666652 33444443 467776 589999999999999765432211 011112
Q ss_pred ccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeec
Q 004467 274 NAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVE 353 (752)
Q Consensus 274 ~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ 353 (752)
.....|++++||+|+|||+..+++.|+ ++|+|||||+|++||.|++. +.+.+ +++.+|+.++|.+..+++
T Consensus 297 ~~~~~~~~~~~l~a~VfK~~~d~~~G~-i~~~RV~sGtL~~g~~v~~~----~~~~~-----~~i~~l~~~~g~~~~~v~ 366 (689)
T TIGR00484 297 EIERKASDDEPFSALAFKVATDPFVGQ-LTFVRVYSGVLKSGSYVKNS----RKNKK-----ERVGRLVKMHANNREEIK 366 (689)
T ss_pred eeeecCCCCCceEEEEEEeeecCCCCe-EEEEEEEEeEEcCCCEEEeC----CCCce-----EEecceEEeecCCccccc
Confidence 345677899999999999999999886 99999999999999999943 33332 689999999999999999
Q ss_pred cccCCCEEEEeccccccccce-eeccCCCCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEc
Q 004467 354 DVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE 432 (752)
Q Consensus 354 ea~AGdIvai~Gl~~~~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~ 432 (752)
+|.|||||++.|++++ .+| ||++.. ....++++.++ +|+++++|+|.++.|.++|.++|++|.++||+|++..+
T Consensus 367 ~~~aGdI~~i~gl~~~--~~gdtl~~~~--~~~~~~~~~~~-~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~~~ 441 (689)
T TIGR00484 367 EVRAGDICAAIGLKDT--TTGDTLCDPK--IDVILERMEFP-EPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFTD 441 (689)
T ss_pred ccCCCCEEEEcCCCCC--CCCCEEeCCC--CccccCCCCCC-CceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEEEC
Confidence 9999999999999987 456 998876 55667777775 99999999999999999999999999999999999987
Q ss_pred -CCCcEEEEecchhhHHHHHHHHHhhcCCCcEEEEeCcEEEEEeecccccceeEEeecCCCceEEEEEEEeCChhhHHHH
Q 004467 433 -ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAI 511 (752)
Q Consensus 433 -etge~il~g~GelhLei~~~rL~~~f~~~vev~~s~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~ePl~~~~~~~i 511 (752)
+|||++|+|||||||||+++||+++| |+++++++|+|+|||||.+.++. .++|++
T Consensus 442 ~etge~il~g~GelHLei~~~~L~~~~--~vev~~~~p~V~yrEti~~~~~~------~~~~~~---------------- 497 (689)
T TIGR00484 442 PETGQTIIAGMGELHLDIIVDRMKREF--KVEANVGAPQVAYRETIRSKVEV------EGKHAK---------------- 497 (689)
T ss_pred CCCCCEEEEEeeHHHHHHHHHHHHHHh--CCeeEecCCEEEEeecccCcccc------cccccc----------------
Confidence 89999999999999999999999999 99999999999999999987632 333433
Q ss_pred HcCCCCCCCChHHHHHHhhhhcCCchhccCcEEE-eccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCcCCCC
Q 004467 512 DDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWC-FGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEEN 590 (752)
Q Consensus 512 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~-~~P~~~~~n~~~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~~p 590 (752)
++|+. ++|+ .||. ++|.+.+++.|.+.+.++..+.+++++|++||+||+++|||||+|
T Consensus 498 ~~~~~--------------~~~~-------~v~l~~eP~~~~g~~~~~~i~~g~~~~~~~~av~~g~~~a~~~GpL~g~p 556 (689)
T TIGR00484 498 QSGGR--------------GQYG-------HVKIRFEPLEPKGYEFVNEIKGGVIPREYIPAVDKGLQEAMESGPLAGYP 556 (689)
T ss_pred ccCCC--------------CceE-------EEEEEEEECCCCCcEEEEeccCCcCCHHHHHHHHHHHHHHHhcCCcCCCc
Confidence 33221 2233 2554 666555567778888888889999999999999999999999999
Q ss_pred eeeeEEEEEeeeecc-cccccCCCchHHHHHHHHHHHHHhCCCeEEeeEEEEEEEecCcccccHHHHhhhhccccccccc
Q 004467 591 MRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQ 669 (752)
Q Consensus 591 v~~v~v~l~d~~~~~-d~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~ 669 (752)
|+||+|+|+|+++|. |+. ..+|+.|+++||++|+++|+|+||||||+|+|+||++++|+|+++|++|||+|.++++
T Consensus 557 v~~v~v~l~~~~~~~~~s~---~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~ 633 (689)
T TIGR00484 557 VVDIKATLFDGSYHDVDSS---EMAFKLAASLAFKEAGKKANPVLLEPIMKVEVEVPEEYMGDVMGDLSSRRGIIEGMEA 633 (689)
T ss_pred eeeEEEEEEEeecCCCCCC---HHHHHHHHHHHHHHHHHhCCCeeecCcEEEEEEecHHHhHhHHHHHHhcCCeEecccc
Confidence 999999999999996 443 3456789999999999999999999999999999999999999999999999998876
Q ss_pred cCCCCcEEEEEEecchhhcCchHHhhhhCCCceeeeeEecceeecCCCCCCCchHHHHHHHH
Q 004467 670 RPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVAD 731 (752)
Q Consensus 670 ~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~d~~~~~~~~~~~~~~ 731 (752)
.. +.+.|+|++|++|+|||+++||++|+|+|+|+|+|+||++||+++ +++++++
T Consensus 634 ~~--~~~~I~a~vP~~e~~g~~~~Lrs~T~G~~~~~~~f~~y~~v~~~~------~~~ii~~ 687 (689)
T TIGR00484 634 RG--NVQKIKAEVPLSEMFGYATDLRSFTQGRGTYSMEFLHYGEVPSSV------ANEIIEK 687 (689)
T ss_pred cC--CcEEEEEEeCHHHHhChHHHHHHhcCCceEEEEEeccceeCCHHH------HHHHHHh
Confidence 54 578999999999999999999999999999999999999999885 7777643
No 13
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=2.3e-102 Score=917.89 Aligned_cols=615 Identities=29% Similarity=0.444 Sum_probs=508.3
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC----ccccCCchhHhHhcceeccceEEEEEeeccchhccccC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG 91 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~----~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~ 91 (752)
++++|||+|+||+|||||||+++|++.+|.+++ .|. .+++|+.++|++||+|+.++..++.|.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~--~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~----------- 71 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHK--MGEVEDGTTVTDWMPQEQERGITIESAATSCDWD----------- 71 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccc--cccccCCcccCCCCHHHHhcCCCcccceEEEEEC-----------
Confidence 467999999999999999999999999998876 332 468999999999999999999999996
Q ss_pred CCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh--CCCCcchh
Q 004467 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW--GENFFDPA 162 (752)
Q Consensus 92 ~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld--g~~~~~~~ 162 (752)
++.++|+|||||.||..++.++++.+|++|+|+|+++|++ .++.+.++|.++|+||+| ++++...+
T Consensus 72 -----~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~ 146 (687)
T PRK13351 72 -----NHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVL 146 (687)
T ss_pred -----CEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHH
Confidence 7999999999999999999999999999999999999876 556778999999999999 66665544
Q ss_pred hc---cccccC------CCCccccCc-----------------------------ceeeEechHHHHHHHhhccchhhHH
Q 004467 163 TK---KWTTKN------TGSATCKRG-----------------------------FVQFCYEPIKQIINTCMNDQKDKLW 204 (752)
Q Consensus 163 ~~---~~~~~~------~g~~~~~~~-----------------------------fv~~~l~~i~~l~~~~~~~~~~~l~ 204 (752)
.. .+...+ .+.+..+.+ +.++++++.+++++.+++.++++++
T Consensus 147 ~~i~~~l~~~~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle 226 (687)
T PRK13351 147 EDIEERFGKRPLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLE 226 (687)
T ss_pred HHHHHHHCCCeEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 42 222211 111111112 2222334556788999999999999
Q ss_pred HHHHHcCCCCChhhHhhchHHHHHHHH-hccccc----------hHHHHHHHHhcCCCchhhhhhhhhcccCCCCccccc
Q 004467 205 PMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYA 273 (752)
Q Consensus 205 ~~l~~l~~~l~~~~~~~~~~~l~~~~~-~~~~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~ 273 (752)
+|++. ..++.+++. ..+.+.+. +.|+|+ ++.|||++++++|+|.+++..+... + +. .
T Consensus 227 ~~l~~--~~l~~~~l~---~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~---~---~~-~ 294 (687)
T PRK13351 227 LYLEG--EELSAEQLR---APLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSK---D---NG-K 294 (687)
T ss_pred HHhCC--CCCCHHHHH---HHHHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccC---C---CC-C
Confidence 99984 778777763 23333333 578997 5899999999999997654433221 0 00 1
Q ss_pred ccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeec
Q 004467 274 NAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVE 353 (752)
Q Consensus 274 ~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ 353 (752)
...+.|++++|++++|||++.+++.|+ ++|+|||||+|++||+|++.+. +. .+++.+|+.++|.+..+++
T Consensus 295 ~~~~~~~~~~pl~a~VfK~~~d~~~G~-i~~~RV~sGtl~~g~~v~~~~~----~~-----~~~i~~i~~~~g~~~~~v~ 364 (687)
T PRK13351 295 PVKVDPDPEKPLLALVFKVQYDPYAGK-LTYLRVYSGTLRAGSQLYNGTG----GK-----REKVGRLFRLQGNKREEVD 364 (687)
T ss_pred ceeecCCCCCCeEEEEEEeeecCCCce-EEEEEEeEEEEcCCCEEEeCCC----CC-----ceEeeeEEEEccCCeeECC
Confidence 123567889999999999999998887 9999999999999999997642 22 2689999999999999999
Q ss_pred cccCCCEEEEeccccccccce-eeccCCCCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEc
Q 004467 354 DVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE 432 (752)
Q Consensus 354 ea~AGdIvai~Gl~~~~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~ 432 (752)
+|.||||+++.|++++ .+| ||++.. ....++++.++ +|+++++|+|.+++|.++|.+||++|.+|||+|+++.+
T Consensus 365 ~~~aGdI~~i~gl~~~--~~gdtl~~~~--~~~~~~~~~~~-~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~~~ 439 (687)
T PRK13351 365 RAKAGDIVAVAGLKEL--ETGDTLHDSA--DPVLLELLTFP-EPVVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVEED 439 (687)
T ss_pred ccCCCCEEEEECcccC--ccCCEEeCCC--CccccCCCCCC-CccEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEC
Confidence 9999999999999987 456 998876 45566666664 99999999999999999999999999999999999987
Q ss_pred -CCCcEEEEecchhhHHHHHHHHHhhcCCCcEEEEeCcEEEEEeecccccceeEEeecCCCceEEEEEEEeCChhhHHHH
Q 004467 433 -ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAI 511 (752)
Q Consensus 433 -etge~il~g~GelhLei~~~rL~~~f~~~vev~~s~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~ePl~~~~~~~i 511 (752)
+|||++|+||||||||++++||+++| ++++++++|+|+|||||.+.++. .++|++
T Consensus 440 ~etge~ii~g~GelHLei~~~rL~~~~--~vev~~~~p~V~y~Eti~~~~~~------~~~~~~---------------- 495 (687)
T PRK13351 440 EETGQTILSGMGELHLEVALERLRREF--KLEVNTGKPQVAYRETIRKMAEG------VYRHKK---------------- 495 (687)
T ss_pred CCCCCEEEEEecHHHHHHHHHHHHHHh--CCceEecCCeEEEEeeccccccc------cceeee----------------
Confidence 89999999999999999999999999 99999999999999999987632 223322
Q ss_pred HcCCCCCCCChHHHHHHhhhhcCCchhccCcEEE-eccCCCC-CceEEecccCccchHHHHHHHHHHHHHHHHcCCcCCC
Q 004467 512 DDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWC-FGPETTG-PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEE 589 (752)
Q Consensus 512 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~-~~P~~~~-~n~~~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~~ 589 (752)
+.|+. ++|+ .|+. ++|.+.+ ++.|.+.+.|..++++|+++|++||++|+++|||||+
T Consensus 496 ~~~~~--------------~~~~-------~v~~~~ep~~~~~g~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~GpL~~~ 554 (687)
T PRK13351 496 QFGGK--------------GQFG-------EVHLRVEPLERGAGFIFVSKVVGGAIPEELIPAVEKGIREALASGPLAGY 554 (687)
T ss_pred ccCCC--------------ceEE-------EEEEEEEECCCCCCcEEeecccCCcCCHHHHHHHHHHHHHHHhcCCCCCC
Confidence 22221 1222 1443 4554322 4788888888899999999999999999999999999
Q ss_pred CeeeeEEEEEeeeecccccccCCCchHHHHHHHHHHHHHhCCCeEEeeEEEEEEEecCcccccHHHHhhhhccccccccc
Q 004467 590 NMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQ 669 (752)
Q Consensus 590 pv~~v~v~l~d~~~~~d~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~ 669 (752)
||+||+|+|+|+++|.+.+ ..++|++|+++||++|+++|+|+||||||+|||++|++++|+|+++|++|||+|+++++
T Consensus 555 pv~~v~v~l~~~~~~~~~s--~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~ 632 (687)
T PRK13351 555 PVTDLRVTVLDGKYHPVDS--SESAFKAAARKAFLEAFRKANPVLLEPIMELEITVPTEHVGDVLGDLSQRRGRIEGTEP 632 (687)
T ss_pred ceeeEEEEEEEecCCCCCC--CHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEechHhhhhHHHHHHhCCcEEeceec
Confidence 9999999999999997332 35789999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCcEEEEEEecchhhcCchHHhhhhCCCceeeeeEecceeecCCCCCCCchHHHHHH
Q 004467 670 RPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLV 729 (752)
Q Consensus 670 ~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~d~~~~~~~~~~~~ 729 (752)
..++ .+.|+|++|++|||||+++||++|+|+|+|+|+|+||++||+++ +++++
T Consensus 633 ~~~~-~~~i~a~vP~~e~~~~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~------~~~~~ 685 (687)
T PRK13351 633 RGDG-EVLVKAEAPLAELFGYATRLRSMTKGRGSFTMEFSHFDPVPPAV------QKKVG 685 (687)
T ss_pred CCCc-EEEEEEEECHHHhhChHHHHHhhcCCceEEEEEeccceeCCHHH------HHHHh
Confidence 6553 33499999999999999999999999999999999999999875 66654
No 14
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=4.3e-97 Score=872.09 Aligned_cols=597 Identities=29% Similarity=0.448 Sum_probs=492.7
Q ss_pred EeCCCCChHHHHHHHHHHcCCCccccCCC----ccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 25 IAHVDHGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 25 ighvd~GKTTL~~~ll~~~g~i~~~~~g~----~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
+||+|||||||+++|++.+|.+++ .|+ .+++|+++.||+||||+.++..++.|. ++.+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~--~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~----------------~~~i 62 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHR--IGEVEDGTTTMDFMPEERERGISITSAATTCEWK----------------GHKI 62 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCcc--CccccCCcccCCCChHHHhcCCCeeeceEEEEEC----------------CEEE
Confidence 699999999999999999999877 332 379999999999999999999999996 7999
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh--CCCCcchhhc---cccc
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW--GENFFDPATK---KWTT 168 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld--g~~~~~~~~~---~~~~ 168 (752)
+|||||||.+|..++.++++.+|++|+|||+.+|+. .++...++|.++++||+| ++++.+.+.. .+..
T Consensus 63 ~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~ 142 (668)
T PRK12740 63 NLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGA 142 (668)
T ss_pred EEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999876 556678999999999999 4444333321 1221
Q ss_pred cC------CCCccccCcceeeEe--------------------------chHHHHHHHhhccchhhHHHHHHHcCCCCCh
Q 004467 169 KN------TGSATCKRGFVQFCY--------------------------EPIKQIINTCMNDQKDKLWPMLQKLGVTMKS 216 (752)
Q Consensus 169 ~~------~g~~~~~~~fv~~~l--------------------------~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~ 216 (752)
.. ...+....++++++. ++..++++.+++.+++.+++|++. ..++.
T Consensus 143 ~~~~~~~p~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~--~~l~~ 220 (668)
T PRK12740 143 PVVPLQLPIGEGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEG--EELSE 220 (668)
T ss_pred CceeEEecccCCCCceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCC--CCCCH
Confidence 10 111111222333221 234467788888999999999987 66766
Q ss_pred hhHhhchHHHHHHHH-hccccc----------hHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCe
Q 004467 217 EEKDLMGKALMKRVM-QTWLPA----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPL 285 (752)
Q Consensus 217 ~~~~~~~~~l~~~~~-~~~~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl 285 (752)
+++.. .+.+.+. +.|+|+ ++.||+++++++|+|.+++.+ .+.. ........|++++|+
T Consensus 221 ~~~~~---~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~------~~~~--~~~~~~~~~~~~~~l 289 (668)
T PRK12740 221 EEIKA---GLRKATLAGEIVPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPV------DGED--GEEGAELAPDPDGPL 289 (668)
T ss_pred HHHHH---HHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhcccc------cCCC--CccccccccCCCCCe
Confidence 66632 2333322 578998 789999999999999765432 1111 112345667889999
Q ss_pred EEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEec
Q 004467 286 MLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVG 365 (752)
Q Consensus 286 ~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~G 365 (752)
+++|||++++++.|. ++|+|||||+|++||+|++.+. ++ .+++.+|+.++|++..++++|.|||||++.|
T Consensus 290 ~a~v~k~~~~~~~G~-i~~~RV~sG~L~~g~~v~~~~~----~~-----~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~g 359 (668)
T PRK12740 290 VALVFKTMDDPFVGK-LSLVRVYSGTLKKGDTLYNSGT----GK-----KERVGRLYRMHGKQREEVDEAVAGDIVAVAK 359 (668)
T ss_pred EEEEEEeeecCCCCc-EEEEEEeeeEEcCCCEEEeCCC----CC-----cEEecceeeecCCCccccCccCCCCEEEEec
Confidence 999999999998886 9999999999999999997642 22 2689999999999999999999999999999
Q ss_pred cccccccce-eeccCCCCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEc-CCCcEEEEecc
Q 004467 366 LDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAG 443 (752)
Q Consensus 366 l~~~~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~-etge~il~g~G 443 (752)
++.+ .+| ||++.. .+.+++++.++ +|+++++|+|.+++|.++|.++|++|+++||+|++..+ ++||++|+|+|
T Consensus 360 l~~~--~~Gdtl~~~~--~~~~~~~~~~~-~P~~~~~i~p~~~~d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~G 434 (668)
T PRK12740 360 LKDA--ATGDTLCDKG--DPILLEPMEFP-EPVISLAIEPKDKGDEEKLSEALGKLAEEDPTLRVERDEETGQTILSGMG 434 (668)
T ss_pred cCcc--CCCCEEeCCC--CccccCCCCCC-CcceEEEEEECCcchHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEec
Confidence 9875 566 998766 45677777776 99999999999999999999999999999999999987 89999999999
Q ss_pred hhhHHHHHHHHHhhcCCCcEEEEeCcEEEEEeecccccceeEEee-c---CCCceEEEEEEEeCChhhHHHHHcCCCCCC
Q 004467 444 ELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSK-S---PNKHNRLYMEARPLEEGLAEAIDDGRIGPR 519 (752)
Q Consensus 444 elhLei~~~rL~~~f~~~vev~~s~p~V~yrETi~~~~~~~~~~~-~---~~~~~~i~~~~ePl~~~~~~~i~~g~~~~~ 519 (752)
|||||++++||+++| ++++.+++|+|+|||||.++++.....+ . .+.+..++++++|++.+
T Consensus 435 elhLei~~~~L~~~~--~~~v~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~ep~~~~------------- 499 (668)
T PRK12740 435 ELHLDVALERLKREY--GVEVETGPPQVPYRETIRKKAEGHGRHKKQSGGHGQFGDVWLEVEPLPRG------------- 499 (668)
T ss_pred HHHHHHHHHHHHHHh--CceeEecCCeeEEeeccCCCccccceeccccCCCCceEEEEEEEEECCCC-------------
Confidence 999999999999999 9999999999999999998764322111 1 11233566666666431
Q ss_pred CChHHHHHHhhhhcCCchhccCcEEEeccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCcCCCCeeeeEEEEE
Q 004467 520 DDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVC 599 (752)
Q Consensus 520 ~~~~~~~~~l~~~~~~~~~~~~~v~~~~P~~~~~n~~~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~ 599 (752)
..+.|.+.+.+..++++++++|++||++|+++|||||+|++||+|+|+
T Consensus 500 --------------------------------~~~~f~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~p~~~v~v~l~ 547 (668)
T PRK12740 500 --------------------------------EGFEFVDKVVGGAVPRQYIPAVEKGVREALEKGVLAGYPVVDVKVTLT 547 (668)
T ss_pred --------------------------------CceEEeecccCCCccHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEE
Confidence 134566666777889999999999999999999999999999999999
Q ss_pred eeeecccccccCCCchHHHHHHHHHHHHHhCCCeEEeeEEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEE
Q 004467 600 DVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIK 679 (752)
Q Consensus 600 d~~~~~d~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~ 679 (752)
|+.+|.. +....+|+.|+++||++|+++|+|+||||||+|||++|++++|+|+++|++|||+|+++++.++ .+.|+
T Consensus 548 ~~~~~~~--~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~--~~~i~ 623 (668)
T PRK12740 548 DGSYHSV--DSSEMAFKIAARLAFREALPKAKPVLLEPIMKVEVSVPEEFVGDVIGDLSSRRGRILGMESRGG--GDVVR 623 (668)
T ss_pred ecccccC--CCCHHHHHHHHHHHHHHHHHhcCCeeecceEEEEEEechhhhhhHHHHHHhCCCeEeccccCCC--CEEEE
Confidence 9999962 2234578899999999999999999999999999999999999999999999999999987664 38999
Q ss_pred EEecchhhcCchHHhhhhCCCceeeeeEecceeecCCCC
Q 004467 680 AYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDP 718 (752)
Q Consensus 680 a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~d~ 718 (752)
|++|++|+|||+++||++|+|+|+|+++|+||++|++++
T Consensus 624 a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~~~~~~ 662 (668)
T PRK12740 624 AEVPLAEMFGYATDLRSLTQGRGSFSMEFSHYEEVPGNV 662 (668)
T ss_pred EEcCHHHhhchHHHHHHhcCCeEEEEEEecccccCCHHH
Confidence 999999999999999999999999999999999999875
No 15
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-93 Score=729.96 Aligned_cols=607 Identities=27% Similarity=0.412 Sum_probs=476.9
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC----ccccCCchhHhHhcceeccceEEEEEeeccchhccccC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG 91 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~----~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~ 91 (752)
+.++|||+|++|+|+||||.++++||++|.++. +|. .+++|++..||||||||+|+.++|.|+
T Consensus 34 ~akirnigiiahidagktttterily~ag~~~s--~g~vddgdtvtdfla~erergitiqsaav~fdwk----------- 100 (753)
T KOG0464|consen 34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHS--AGDVDDGDTVTDFLAIERERGITIQSAAVNFDWK----------- 100 (753)
T ss_pred hhhhhcceeEEEecCCCchhHHHHHHHhhhhhc--ccccCCCchHHHHHHHHHhcCceeeeeeeecccc-----------
Confidence 368999999999999999999999999999987 665 369999999999999999999999997
Q ss_pred CCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh--CCCCcchh
Q 004467 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW--GENFFDPA 162 (752)
Q Consensus 92 ~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld--g~~~~~~~ 162 (752)
+|+|||||||||+||.-||++.+|+.||||.|+||..||+ +++.++++|.+.|+|||| +++|.+.+
T Consensus 101 -----g~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~av 175 (753)
T KOG0464|consen 101 -----GHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAV 175 (753)
T ss_pred -----cceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHH
Confidence 8999999999999999999999999999999999999998 899999999999999999 88887666
Q ss_pred h---ccccccC------CCCcccc-CcceeeEe------------------chH-----HH-----------HHHHhhcc
Q 004467 163 T---KKWTTKN------TGSATCK-RGFVQFCY------------------EPI-----KQ-----------IINTCMND 198 (752)
Q Consensus 163 ~---~~~~~~~------~g~~~~~-~~fv~~~l------------------~~i-----~~-----------l~~~~~~~ 198 (752)
+ .|++.++ +|+...+ ++|++++. .|+ ++ +.+.+++.
T Consensus 176 dsi~ekl~ak~l~l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~ 255 (753)
T KOG0464|consen 176 DSIEEKLGAKALKLQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADL 255 (753)
T ss_pred HHHHHHhCCceEEEEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhc
Confidence 5 3444433 4442222 45554321 121 12 33334444
Q ss_pred chhhHHHHHHHcCCC---CChhhHhhchHHHHHH-HHhccccc----------hHHHHHHHHhcCCCchhhhhhhhhccc
Q 004467 199 QKDKLWPMLQKLGVT---MKSEEKDLMGKALMKR-VMQTWLPA----------SSALLEMMIFHLPSPSTAQKYRVENLY 264 (752)
Q Consensus 199 ~~~~l~~~l~~l~~~---l~~~~~~~~~~~l~~~-~~~~~~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~ 264 (752)
+.+.-.++|+.+... ++.++++ .++.+- ++++..|+ +++|||++.-|+|||.++ .|.+-.||
T Consensus 256 ~~dfad~~ldef~~n~d~i~a~elk---sai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeer-nyeflqwy 331 (753)
T KOG0464|consen 256 DADFADKFLDEFDENFDKIDAEELK---SAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEER-NYEFLQWY 331 (753)
T ss_pred cHHHHHHHHHHhhccccccCHHHHH---HHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCChhhc-chHHHhhh
Confidence 555555666654322 1222221 111111 12355564 789999999999999775 46677788
Q ss_pred CCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEE
Q 004467 265 EGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIW 344 (752)
Q Consensus 265 ~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~ 344 (752)
. ..++++.||+.++...|. ++|.|||||+++++..+++... +..+++.+++.+
T Consensus 332 k-----------------ddlcalafkvlhdkqrg~-l~fmriysgsi~~~~ai~nin~---------~~se~~~kl~~p 384 (753)
T KOG0464|consen 332 K-----------------DDLCALAFKVLHDKQRGP-LSFMRIYSGSIHNNLAIFNING---------MCSEGILKLFLP 384 (753)
T ss_pred h-----------------hhHHHHhhhhhcccccCc-eeEEEEecccccCceeeeeccc---------ccccchHhhhcc
Confidence 6 238899999999999998 9999999999999999995422 334799999999
Q ss_pred ecCceeeeccccCCCEEEEeccccccccce-eeccCCCC----------------------CccccccccccCCceEEEE
Q 004467 345 MGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEV----------------------DAHPIRAMKFSVSPVVRVA 401 (752)
Q Consensus 345 ~g~~~~~V~ea~AGdIvai~Gl~~~~~~tg-TL~~~~~~----------------------~~~~~~~~~~~~~Pv~~~~ 401 (752)
+++++.+++++.||+|....||+.. .|| |+..++.+ ....+.++..| .|||++.
T Consensus 385 fade~~~i~qlsagnialt~glk~t--atgdtivaskasa~aa~qk~~~egekk~~q~~daerll~agie~p-d~vffc~ 461 (753)
T KOG0464|consen 385 FADEHREIEQLSAGNIALTAGLKHT--ATGDTIVASKASAEAAAQKAAGEGEKKHLQNKDAERLLFAGIEIP-DAVFFCC 461 (753)
T ss_pred chhhhhhhhhcccccEEEEecceee--ccCCeEEecchhHHHHHHHhhccchhhccCCccccceeeecccCC-CceEEEe
Confidence 9999999999999999999999997 456 77665421 11234455554 9999999
Q ss_pred EEeCCCCCHhHHHHHHHHHHhcCCeEEEEEc-CCCcEEEEecchhhHHHHHHHHHhhcCCCcEEEEeCcEEEEEeecccc
Q 004467 402 VQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEK 480 (752)
Q Consensus 402 i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~-etge~il~g~GelhLei~~~rL~~~f~~~vev~~s~p~V~yrETi~~~ 480 (752)
|||.+....+.+..+|+.|.+||||++++.| ++||+++.||||||+|++.+|++++| |+++-+++.+|+|||+|.+.
T Consensus 462 iepps~~k~~d~ehale~lqredpslkir~d~dsgqtil~~~gelhie~ihdrikrey--~ldtfig~lqvayre~i~~~ 539 (753)
T KOG0464|consen 462 IEPPSLRKLNDFEHALECLQREDPSLKIRFDPDSGQTILCGMGELHIEAIHDRIKREY--GLDTFIGKLQVAYREMILEE 539 (753)
T ss_pred ccCcccccchhHHHHHHHHhccCCceeEEecCCCCceEEeccchhhHHHHHHHHHhhc--CchheehhHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 99999999999999999999999999 99999999999999999986
Q ss_pred cceeEEe---ecCCCceEEEEEEEeCChhhHHHHHcCCCCCCCChHHHHHHhhhhcCCchhccCcEEEeccCCCCCceEE
Q 004467 481 SCRTVMS---KSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVV 557 (752)
Q Consensus 481 ~~~~~~~---~~~~~~~~i~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~P~~~~~n~~~ 557 (752)
....... -+..+|- .+++++--+++. + -.++.+ +|- |+-.
T Consensus 540 lr~t~~ld~~lgdkk~~-~~velear~~~t----q-a~ip~k----------------------kie-fe~~-------- 582 (753)
T KOG0464|consen 540 LRATAKLDDGLGDKKHL-EFVELEARLEET----Q-AHIPFK----------------------KIE-FELA-------- 582 (753)
T ss_pred hhhhhhhhccccccccc-eEEEEEeeeccc----c-ccccce----------------------eEE-eecc--------
Confidence 4321110 1122331 223322111110 1 111100 000 1100
Q ss_pred ecccCccchHHH-HHHHHHHHHHHHHcCCcCCCCeeeeEEEEEeeeecccccccCCCchHHHHHHHHHHHHHhCCCeEEe
Q 004467 558 DMCKGVQYLNEI-KDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLE 636 (752)
Q Consensus 558 ~~~~~~~~~~~~-~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~d~~~~~~~~~~~a~~~a~~~a~~~a~~~LlE 636 (752)
... ...+-.+ +.+|++|+..||.+|||+|+|+++|++++..+.+|..... +..+.+++.+|+.+|+.+|.-.|+|
T Consensus 583 es~--n~~~l~~sqeaie~g~~na~~~gpl~g~pi~~v~itl~~~~i~~gk~n--~alisac~qkcvqealkkad~~l~e 658 (753)
T KOG0464|consen 583 ESA--NEGLLDVSQEAIEEGCHNACLNGPLAGSPIHAVAITLHECIIHGGKIN--PALISACAQKCVQEALKKADKQLLE 658 (753)
T ss_pred ccc--cchhhhhHHHHHHhhHHHHHhcCCccCCchhheeEeeEEEEecCCcCC--HHHHHHHHHHHHHHHHhhhhHHHhh
Confidence 000 0112233 6899999999999999999999999999999999965333 4467789999999999999999999
Q ss_pred eEEEEEEEecC-cccccHHHHhhhhccccccccccCCCCcEEEEEEecchhhcCchHHhhhhCCCceeeeeEecceeecC
Q 004467 637 PVYMVEIQAPE-QALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMS 715 (752)
Q Consensus 637 Pi~~~eI~~p~-~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 715 (752)
|+|+++|.+.. +++..|+++|.+|||++...+..+.+....|.|.+|++|..||++.||.+|+|-|.|.++|++|+.|.
T Consensus 659 plm~lei~i~~dd~~qpiladl~qrr~~~e~~~aredneirri~~~lplaei~~~s~~lrtltsg~a~~ale~~~yqamn 738 (753)
T KOG0464|consen 659 PLMELEIEIANDDPLQPILADLAQRRAHFEEIDAREDNEIRRICAFLPLAEIEGLSKTLRTLTSGFADFALEFRGYQAMN 738 (753)
T ss_pred hhhheEEEEecCCCccHHHHHHHHhhccchhcccccccchheeeEeeeHHHhhcHHHHHHHHhcccceEEEEecchhhcC
Confidence 99999999965 99999999999999999998887766677899999999999999999999999999999999999997
Q ss_pred CC
Q 004467 716 SD 717 (752)
Q Consensus 716 ~d 717 (752)
++
T Consensus 739 ~~ 740 (753)
T KOG0464|consen 739 EH 740 (753)
T ss_pred hH
Confidence 75
No 16
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=2e-76 Score=675.84 Aligned_cols=447 Identities=26% Similarity=0.460 Sum_probs=371.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
||||+|+||+|||||||+++|++.+|.+++...-..++||++++||+|||||.++..++.|. ++
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~----------------~~ 64 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYN----------------GT 64 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEEC----------------CE
Confidence 79999999999999999999999999987732223469999999999999999999999996 79
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhhC--CCCcchhhcccccc
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLWG--ENFFDPATKKWTTK 169 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkldg--~~~~~~~~~~~~~~ 169 (752)
.|||||||||.||..++.++++.+|+||+||||.+|++ .++...++|.++|+||+|. +++.....
T Consensus 65 kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~------ 138 (594)
T TIGR01394 65 KINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVD------ 138 (594)
T ss_pred EEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHH------
Confidence 99999999999999999999999999999999999976 6677889999999999993 22211110
Q ss_pred CCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHHhcc--------ccchHHH
Q 004467 170 NTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTW--------LPASSAL 241 (752)
Q Consensus 170 ~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~~--------~P~~~~L 241 (752)
.+..++..++.. ++++.. .-+.-+....| -..+..|
T Consensus 139 --------------------------------ei~~l~~~~g~~--~e~l~~--pvl~~SA~~g~~~~~~~~~~~gi~~L 182 (594)
T TIGR01394 139 --------------------------------EVFDLFAELGAD--DEQLDF--PIVYASGRAGWASLDLDDPSDNMAPL 182 (594)
T ss_pred --------------------------------HHHHHHHhhccc--cccccC--cEEechhhcCcccccCcccccCHHHH
Confidence 111111111110 000000 00000000000 0135789
Q ss_pred HHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEc
Q 004467 242 LEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIM 321 (752)
Q Consensus 242 Ld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~ 321 (752)
|+.+++++|+|.. ++++||+++||+++.+++.|+ ++++||+||+|++||.|++.
T Consensus 183 ld~Iv~~lP~P~~-------------------------~~~~pl~~~V~~i~~d~~~Gr-v~~gRV~sG~lk~G~~V~~~ 236 (594)
T TIGR01394 183 FDAIVRHVPAPKG-------------------------DLDEPLQMLVTNLDYDEYLGR-IAIGRVHRGTVKKGQQVALM 236 (594)
T ss_pred HHHHHHhCCCCCC-------------------------CCCCCEEEEEEEEEeeCCCce-EEEEEEEeCEEccCCEEEEe
Confidence 9999999999931 457899999999999999998 99999999999999999987
Q ss_pred cCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeccCCCCCccccccccccCCceEEE
Q 004467 322 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRV 400 (752)
Q Consensus 322 ~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~Gl~~~~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~~ 400 (752)
+.+ + ....++|.+|+.+.|.++.++++|.|||||++.|++++ .+| |||+.. .+.+++++.++ +|++++
T Consensus 237 ~~~---~---~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i--~~Gdtl~~~~--~~~~l~~~~~~-~P~~~~ 305 (594)
T TIGR01394 237 KRD---G---TIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDI--NIGETIADPE--VPEALPTITVD-EPTLSM 305 (594)
T ss_pred cCC---C---ceeEEEEEEEEEccCCCceECCEECCCCEEEEeCCccc--CCCCEEeCCC--ccccCCCCCCC-CCeEEE
Confidence 532 1 12237999999999999999999999999999999987 667 999987 67778888876 999999
Q ss_pred EEEeCCC---CCHhH------HHHHHHHHHhcCCeEEEEEc-CCCcEEEEecchhhHHHHHHHHHhhcCCCcEEEEeCcE
Q 004467 401 AVQCKVA---SDLPK------LVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPV 470 (752)
Q Consensus 401 ~i~p~~~---~d~~k------L~~~L~~L~~eDPsl~v~~~-etge~il~g~GelhLei~~~rL~~~f~~~vev~~s~p~ 470 (752)
++.|.+. ++..+ |.++|.++.++||+|+++.+ ++++++|+|+|||||+|++++|+++ |+|+.+++|+
T Consensus 306 ~~~~~~~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre---g~e~~~~~P~ 382 (594)
T TIGR01394 306 TFSVNDSPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTESADKFEVSGRGELHLSILIETMRRE---GFELQVGRPQ 382 (594)
T ss_pred EEEecCCCcccccchhhhHHHHHHHHHHhhccCCeEEEEEecCCCeEEEEEECHHHHHHHHHHHhcc---CceEEEeCCE
Confidence 9999754 34334 99999999999999999887 8999999999999999999999998 8999999999
Q ss_pred EEEEeecccccceeEEeecCCCceEEEEEEEeCChhhHHHHHcCCCCCCCChHHHHHHhhhhcCCchhccCcEEEeccCC
Q 004467 471 VSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPET 550 (752)
Q Consensus 471 V~yrETi~~~~~~~~~~~~~~~~~~i~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~P~~ 550 (752)
|+||| +.
T Consensus 383 V~yre-i~------------------------------------------------------------------------ 389 (594)
T TIGR01394 383 VIYKE-ID------------------------------------------------------------------------ 389 (594)
T ss_pred EEEEe-CC------------------------------------------------------------------------
Confidence 99998 20
Q ss_pred CCCceEEecccCccchHHHHHHHHHHHHHHHHcCCcCCCCeeeeEEEEEeeeecccccccCCCchHHHHHHHHHHHHHhC
Q 004467 551 TGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTA 630 (752)
Q Consensus 551 ~~~n~~~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~d~~~~~~~~~~~a~~~a~~~a~~~a 630 (752)
|
T Consensus 390 -----------g-------------------------------------------------------------------- 390 (594)
T TIGR01394 390 -----------G-------------------------------------------------------------------- 390 (594)
T ss_pred -----------C--------------------------------------------------------------------
Confidence 0
Q ss_pred CCeEEeeEEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhhcCchHHhhhhCCCceeeeeEecc
Q 004467 631 KPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDH 710 (752)
Q Consensus 631 ~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~ 710 (752)
.||||||+++|.+|++|+|+|+++|++|||+++++++..+ ++..|+|.+|+++++||.++|||+|+|+|+|+++|+|
T Consensus 391 --~llEPi~~~~i~vp~e~~G~v~~~l~~RrG~~~~~~~~~~-~~~~i~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~ 467 (594)
T TIGR01394 391 --KKLEPIEELTIDVPEEHVGAVIEKLGKRKGEMVDMEPSGN-GRTRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHVFDE 467 (594)
T ss_pred --eEECCEEEEEEEechHHHHHHHHHHHHhCCEEeccEECCC-CEEEEEEEeChHHhhhHHHHHHhhcCCeEEEEEEecc
Confidence 5799999999999999999999999999999999998543 5889999999999999999999999999999999999
Q ss_pred eeecCCCC
Q 004467 711 WDMMSSDP 718 (752)
Q Consensus 711 y~~v~~d~ 718 (752)
|+++|++.
T Consensus 468 Y~~~~~~i 475 (594)
T TIGR01394 468 YEPWKGEI 475 (594)
T ss_pred ceeCCCcC
Confidence 99999875
No 17
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=3.3e-74 Score=660.29 Aligned_cols=476 Identities=26% Similarity=0.411 Sum_probs=382.8
Q ss_pred cccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCC
Q 004467 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGER 93 (752)
Q Consensus 14 ~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~ 93 (752)
...++||||+|+||+|||||||+++|++.+|.++++..+ .+++|++++||+||||++++.+++.|.. .
T Consensus 2 ~~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~-~~~lD~~~~ErerGiTi~~~~v~~~~~~-----------~ 69 (600)
T PRK05433 2 MDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMK-AQVLDSMDLERERGITIKAQAVRLNYKA-----------K 69 (600)
T ss_pred CccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccc-cccccCchHHhhcCCcccccEEEEEEEc-----------c
Confidence 346789999999999999999999999999999875454 4799999999999999999999999962 1
Q ss_pred CCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhhCCCCcchhhccc
Q 004467 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLWGENFFDPATKKW 166 (752)
Q Consensus 94 ~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkldg~~~~~~~~~~~ 166 (752)
+++++.+||+|||||.||..++.++++.||+||+|||+++|++ .++...++|.++|+||+|....
T Consensus 70 dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a-------- 141 (600)
T PRK05433 70 DGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAA-------- 141 (600)
T ss_pred CCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcc--------
Confidence 2357899999999999999999999999999999999999866 4455679999999999992110
Q ss_pred cccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHHhcccc-------chH
Q 004467 167 TTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLP-------ASS 239 (752)
Q Consensus 167 ~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~~~P-------~~~ 239 (752)
. ++.+ ...+.+.++... . .++| .++
T Consensus 142 ------------~------------~~~v-------~~ei~~~lg~~~--~---------------~vi~iSAktG~GI~ 173 (600)
T PRK05433 142 ------------D------------PERV-------KQEIEDVIGIDA--S---------------DAVLVSAKTGIGIE 173 (600)
T ss_pred ------------c------------HHHH-------HHHHHHHhCCCc--c---------------eEEEEecCCCCCHH
Confidence 0 0000 011111122210 0 0122 256
Q ss_pred HHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEE
Q 004467 240 ALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVR 319 (752)
Q Consensus 240 ~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~ 319 (752)
.|++.+.+.+|+|.. ++++||.++|||++.+++.|. ++++||++|+|+.||.|+
T Consensus 174 ~Ll~~I~~~lp~P~~-------------------------~~~~pl~~~Vfd~~~d~~~G~-v~~~rV~sG~Lk~Gd~i~ 227 (600)
T PRK05433 174 EVLEAIVERIPPPKG-------------------------DPDAPLKALIFDSWYDNYRGV-VVLVRVVDGTLKKGDKIK 227 (600)
T ss_pred HHHHHHHHhCccccC-------------------------CCCCCceEEEEEEEecCCCce-EEEEEEEcCEEecCCEEE
Confidence 899999999999832 467899999999999999997 999999999999999999
Q ss_pred EccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEe-cccc-ccccce-eeccCCCCCccccccccccCCc
Q 004467 320 IMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-GLDQ-FITKNA-TLTNEKEVDAHPIRAMKFSVSP 396 (752)
Q Consensus 320 i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~-Gl~~-~~~~tg-TL~~~~~~~~~~~~~~~~~~~P 396 (752)
+++.+ . ..+|.+++.+.+ +..+++++.||||+++. |+++ ..+++| ||++...+...++++++++ +|
T Consensus 228 ~~~~~----~-----~~~V~~i~~~~~-~~~~v~~~~aGdIg~i~~~ik~~~~~~~Gdtl~~~~~~~~~~l~~~~~~-~P 296 (600)
T PRK05433 228 MMSTG----K-----EYEVDEVGVFTP-KMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNPAEEPLPGFKEV-KP 296 (600)
T ss_pred EecCC----c-----eEEEEEeeccCC-CceECcEEcCCCEEEEecccccccccCCCCEEECCCCccccCCCCCCCC-Cc
Confidence 87532 2 268999986655 88999999999999885 5432 113677 9988762122467777765 99
Q ss_pred eEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEcCCCcEEEEe-----cchhhHHHHHHHHHhhcCCCcEEEEeCcEE
Q 004467 397 VVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAG-----AGELHLEICLKDLQDDFMGGAEIIKSDPVV 471 (752)
Q Consensus 397 v~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~etge~il~g-----~GelhLei~~~rL~~~f~~~vev~~s~p~V 471 (752)
+++++++|.+.+|.++|.++|++|++|||||.++ .||++.++.| ||+|||||+++||+++| |+++.+++|.|
T Consensus 297 ~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~-~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~--~~~v~~~~P~V 373 (600)
T PRK05433 297 MVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE-PETSQALGFGFRCGFLGLLHMEIIQERLEREF--DLDLITTAPSV 373 (600)
T ss_pred EEEEEEEECCccCHHHHHHHHHHHHHhCCeEEEE-ecCCcceecceEeecHHHHHHHHHHHHHHHhh--CceEEEecCEE
Confidence 9999999999999999999999999999999997 6899999999 99999999999999999 99999999999
Q ss_pred EEEeecccccceeEEeecCCCceEEEEEEEeCChhhHHHHHcCCCCCCCChHHHHHHhhhhcCCchhccCcEEEeccCCC
Q 004467 472 SFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETT 551 (752)
Q Consensus 472 ~yrETi~~~~~~~~~~~~~~~~~~i~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~P~~~ 551 (752)
+||||+.+.. .+.++ .
T Consensus 374 ~Yreti~~g~---------------~~~~~---------------------------------------------~---- 389 (600)
T PRK05433 374 VYEVTLTDGE---------------VIEVD---------------------------------------------N---- 389 (600)
T ss_pred EEEEEEeCCc---------------EEEEE---------------------------------------------C----
Confidence 9999987621 00010 0
Q ss_pred CCceEEecccCccchHHHHHHHHHHHHHHHHcCCcCCCCeeeeEEEEEeeeecccccccCCCchHHHHHHHHHHHHHhCC
Q 004467 552 GPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAK 631 (752)
Q Consensus 552 ~~n~~~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~d~~~~~~~~~~~a~~~a~~~a~~~a~ 631 (752)
| .|+| |+++..
T Consensus 390 ---------------------------------p-~~~p---------------ds~~~~-------------------- 400 (600)
T PRK05433 390 ---------------------------------P-SKLP---------------DPGKIE-------------------- 400 (600)
T ss_pred ---------------------------------c-ccCC---------------Cccccc--------------------
Confidence 1 1222 332221
Q ss_pred CeEEeeEEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhh-cCchHHhhhhCCCceeeeeEecc
Q 004467 632 PRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES-FGFSGTLRAATSGQAFPQCVFDH 710 (752)
Q Consensus 632 ~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~ 710 (752)
.||||||+++|.+|++|+|+|++++++|||++++++..+ +...|+|.+|++|+ ++|.++|||+|+|.|+|.++|+|
T Consensus 401 -~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~--~~~~i~~~~Pl~e~~~~~~~~Lks~T~G~gs~~~~~~~ 477 (600)
T PRK05433 401 -EIEEPIVKATIIVPQEYVGAVMELCQEKRGVQKDMEYLG--NRVELTYELPLAEIVFDFFDRLKSVSRGYASLDYEFIG 477 (600)
T ss_pred -eEECCEEEEEEEecHHHHHHHHHHHHHcCCEEeCcEecC--CeEEEEEEechHHhhhhHHHHhHhhcCCEEEEEEEECC
Confidence 899999999999999999999999999999999999765 47899999999999 99999999999999999999999
Q ss_pred eeec---------CCCCCCC----------chHHHHHHHHHH
Q 004467 711 WDMM---------SSDPLEP----------GTQAAQLVADIR 733 (752)
Q Consensus 711 y~~v---------~~d~~~~----------~~~~~~~~~~~r 733 (752)
|++. .++|.|. .+.+++++.+++
T Consensus 478 Y~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 519 (600)
T PRK05433 478 YRESDLVKLDILINGEPVDALSFIVHRDKAYERGRALVEKLK 519 (600)
T ss_pred cccccEEEEEEEECCcccceeEEeeeHHHHHHHHHHHHHHHH
Confidence 9985 4455442 346677776643
No 18
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=8e-74 Score=652.91 Aligned_cols=449 Identities=25% Similarity=0.432 Sum_probs=370.0
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~ 95 (752)
+++||||+|+||+|||||||+++|++.+|.+.+...-..++||++++|++||+|+.+...++.|.
T Consensus 2 ~~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~--------------- 66 (607)
T PRK10218 2 IEKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWN--------------- 66 (607)
T ss_pred CCCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecC---------------
Confidence 35799999999999999999999999999887632222479999999999999999999999996
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh--CCCCcchhhccc
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW--GENFFDPATKKW 166 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld--g~~~~~~~~~~~ 166 (752)
++.|||+|||||.||..++.++++.+|++|+|||+.+|++ ..+.++++|.++++||+| ++++...+..
T Consensus 67 -~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~e-- 143 (607)
T PRK10218 67 -DYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQ-- 143 (607)
T ss_pred -CEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHH--
Confidence 7999999999999999999999999999999999999965 667789999999999999 2333222111
Q ss_pred cccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHHhcc--------ccch
Q 004467 167 TTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTW--------LPAS 238 (752)
Q Consensus 167 ~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~~--------~P~~ 238 (752)
+..++..++......++.. +.-+....| -..+
T Consensus 144 ------------------------------------i~~l~~~l~~~~~~~~~PV----i~~SA~~G~~~~~~~~~~~~i 183 (607)
T PRK10218 144 ------------------------------------VFDLFVNLDATDEQLDFPI----VYASALNGIAGLDHEDMAEDM 183 (607)
T ss_pred ------------------------------------HHHHHhccCccccccCCCE----EEeEhhcCcccCCccccccch
Confidence 1111111110000000000 000000000 0124
Q ss_pred HHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEE
Q 004467 239 SALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKV 318 (752)
Q Consensus 239 ~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v 318 (752)
..||+++++++|+|.. ++++||.++|||++.+++.|+ ++++||+||+|++||.|
T Consensus 184 ~~Lld~Ii~~iP~P~~-------------------------~~~~Pl~~~V~k~~~d~~~G~-i~~gRV~sG~lk~Gd~v 237 (607)
T PRK10218 184 TPLYQAIVDHVPAPDV-------------------------DLDGPFQMQISQLDYNSYVGV-IGIGRIKRGKVKPNQQV 237 (607)
T ss_pred HHHHHHHHHhCCCCCC-------------------------CCCCCeEEEEEeeEecCCCcE-EEEEEEEeCcCcCCCEE
Confidence 6899999999999931 467899999999999999998 99999999999999999
Q ss_pred EEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeccCCCCCccccccccccCCce
Q 004467 319 RIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPV 397 (752)
Q Consensus 319 ~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~Gl~~~~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv 397 (752)
++.+.+ + ....++|.+||.+.|.++.++++|.|||||+++|++++ .+| |||+.. .+.+++.+.++ +|+
T Consensus 238 ~~~~~~---~---~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~--~~GdTl~~~~--~~~~l~~~~~~-~P~ 306 (607)
T PRK10218 238 TIIDSE---G---KTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGEL--NISDTVCDTQ--NVEALPALSVD-EPT 306 (607)
T ss_pred EEecCC---C---cEeeEEEEEEEEEecCCceECCEEcCCCEEEEECcccc--ccCcEEecCC--CcccCCCCCCC-CCe
Confidence 976421 1 12237999999999999999999999999999999997 667 999887 66778888776 999
Q ss_pred EEEEEEeCC---CCCHhHHHH---HHHHHHh---cCCeEEEEEc-CCCcEEEEecchhhHHHHHHHHHhhcCCCcEEEEe
Q 004467 398 VRVAVQCKV---ASDLPKLVE---GLKRLAK---SDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKS 467 (752)
Q Consensus 398 ~~~~i~p~~---~~d~~kL~~---~L~~L~~---eDPsl~v~~~-etge~il~g~GelhLei~~~rL~~~f~~~vev~~s 467 (752)
+++++.|.+ .+|..|+.. +|++|.+ +||+|+++.+ ++++++|+|+|||||+|++++|+++ |+|+.++
T Consensus 307 ~~~~~~~~~sp~~g~e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre---g~e~~~~ 383 (607)
T PRK10218 307 VSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRRE---GFELAVS 383 (607)
T ss_pred EEEEEEeCCCccccchhhhhhHHHHHHHHHHhhCCCCeEEEEEcCCCCeEEEEEEcHHHHHHHHHHHHhC---CceEEEe
Confidence 999999999 889999855 5555555 9999999887 8999999999999999999999999 8999999
Q ss_pred CcEEEEEeecccccceeEEeecCCCceEEEEEEEeCChhhHHHHHcCCCCCCCChHHHHHHhhhhcCCchhccCcEEEec
Q 004467 468 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFG 547 (752)
Q Consensus 468 ~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~ 547 (752)
+|+|+|||| + +
T Consensus 384 ~P~V~yret--~-----------------------------------g-------------------------------- 394 (607)
T PRK10218 384 RPKVIFREI--D-----------------------------------G-------------------------------- 394 (607)
T ss_pred CCEEEEEEE--C-----------------------------------C--------------------------------
Confidence 999999998 1 0
Q ss_pred cCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCcCCCCeeeeEEEEEeeeecccccccCCCchHHHHHHHHHHHH
Q 004467 548 PETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 627 (752)
Q Consensus 548 P~~~~~n~~~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~d~~~~~~~~~~~a~~~a~~~a~ 627 (752)
..
T Consensus 395 ---------------~k--------------------------------------------------------------- 396 (607)
T PRK10218 395 ---------------RK--------------------------------------------------------------- 396 (607)
T ss_pred ---------------EE---------------------------------------------------------------
Confidence 00
Q ss_pred HhCCCeEEeeEEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhhcCchHHhhhhCCCceeeeeE
Q 004467 628 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCV 707 (752)
Q Consensus 628 ~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~ 707 (752)
||||++++|.+|++|+|+|+++|++|||+++++++..+ ++..|+|.+|+++++||.++|||+|+|+|.|++.
T Consensus 397 -------lEPi~~v~i~vP~e~~G~V~~~l~~RrG~~~~m~~~~~-~~~~l~~~vP~~~l~~y~~~l~s~T~G~g~~~~~ 468 (607)
T PRK10218 397 -------QEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGK-GRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYST 468 (607)
T ss_pred -------eCCeEEEEEEechhhHHHHHHHHHhcCCEEeccEECCC-CEEEEEEEcCHHHHhhHHHHhhhhCCCeEEEEEE
Confidence 69999999999999999999999999999999997543 5889999999999999999999999999999999
Q ss_pred ecceeecC-CC
Q 004467 708 FDHWDMMS-SD 717 (752)
Q Consensus 708 f~~y~~v~-~d 717 (752)
|+||+++| ++
T Consensus 469 f~~Y~~~~~g~ 479 (607)
T PRK10218 469 FSHYDDVRPGE 479 (607)
T ss_pred ecCccCCCCCC
Confidence 99999999 55
No 19
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=8.1e-73 Score=648.17 Aligned_cols=474 Identities=26% Similarity=0.414 Sum_probs=380.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+||||+|+||+|||||||+++|++.+|.++++..+ .+++|++++||+||||++++.+++.|.. .+++
T Consensus 1 ~~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~-~~~~D~~~~ErerGiTi~~~~v~~~~~~-----------~~g~ 68 (595)
T TIGR01393 1 KNIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMR-EQVLDSMDLERERGITIKAQAVRLNYKA-----------KDGE 68 (595)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHcCCCcccccc-ccccCCChHHHhcCCCeeeeEEEEEEEc-----------CCCC
Confidence 369999999999999999999999999999875444 4799999999999999999999999951 1234
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhhCCCCcchhhcccccc
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLWGENFFDPATKKWTTK 169 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkldg~~~~~~~~~~~~~~ 169 (752)
.+.+||+|||||.||..++.++++.||+||+|+|+++|++ ..+...++|.++++||+|..+..
T Consensus 69 ~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~---------- 138 (595)
T TIGR01393 69 TYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSAD---------- 138 (595)
T ss_pred EEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccC----------
Confidence 6899999999999999999999999999999999999865 33456789999999999921100
Q ss_pred CCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHHhcccc-------chHHHH
Q 004467 170 NTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLP-------ASSALL 242 (752)
Q Consensus 170 ~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~~~P-------~~~~LL 242 (752)
.+. ....+.+.++... .+ +++ .++.|+
T Consensus 139 ----------------------~~~-------~~~el~~~lg~~~--~~---------------vi~vSAktG~GI~~Ll 172 (595)
T TIGR01393 139 ----------------------PER-------VKKEIEEVIGLDA--SE---------------AILASAKTGIGIEEIL 172 (595)
T ss_pred ----------------------HHH-------HHHHHHHHhCCCc--ce---------------EEEeeccCCCCHHHHH
Confidence 000 0011111122110 00 122 256899
Q ss_pred HHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEcc
Q 004467 243 EMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMG 322 (752)
Q Consensus 243 d~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~ 322 (752)
+.+.+.+|+|.. ++++||.++||+++.+++.|. ++++||++|+|++||+|++++
T Consensus 173 e~I~~~lp~p~~-------------------------~~~~pl~~~V~~~~~d~~~G~-v~~~rV~sG~lk~Gd~v~~~~ 226 (595)
T TIGR01393 173 EAIVKRVPPPKG-------------------------DPDAPLKALIFDSHYDNYRGV-VALVRVFEGTIKPGDKIRFMS 226 (595)
T ss_pred HHHHHhCCCCCC-------------------------CCCCCeEEEEEEEEEeCCCcE-EEEEEEECCEEecCCEEEEec
Confidence 999999999832 467899999999999999997 999999999999999999875
Q ss_pred CCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEe-ccccc-cccce-eeccCCCCCccccccccccCCceEE
Q 004467 323 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-GLDQF-ITKNA-TLTNEKEVDAHPIRAMKFSVSPVVR 399 (752)
Q Consensus 323 ~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~-Gl~~~-~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~ 399 (752)
. +. ..+|.+++.+.+.. .+++++.||||+++. |+++. .+++| ||++...+...++++++++ +|+++
T Consensus 227 ~----~~-----~~~v~~i~~~~~~~-~~v~~~~aGdIg~i~~~~~~~~~~~~Gdtl~~~~~~~~~~l~~~~~~-~P~v~ 295 (595)
T TIGR01393 227 T----GK-----EYEVDEVGVFTPKL-TKTDELSAGEVGYIIAGIKDVSDVRVGDTITHVKNPAKEPLPGFKEV-KPMVF 295 (595)
T ss_pred C----CC-----eeEEeEEEEecCCc-eECCEEcCCCEEEEeccccccCccCCCCEEECCCCccccCCCCCcCC-CcEEE
Confidence 3 22 26899999776655 899999999998875 54331 13677 9988762122467777765 99999
Q ss_pred EEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEcCCCcEEEEe-----cchhhHHHHHHHHHhhcCCCcEEEEeCcEEEEE
Q 004467 400 VAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAG-----AGELHLEICLKDLQDDFMGGAEIIKSDPVVSFR 474 (752)
Q Consensus 400 ~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~etge~il~g-----~GelhLei~~~rL~~~f~~~vev~~s~p~V~yr 474 (752)
++++|.+.+|.++|.++|++|.+|||+|.++ .||++.++.| ||+|||||+++||+++| |+++.+++|.|+||
T Consensus 296 ~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~-~e~~~~l~~g~r~g~lG~lHlei~~erL~re~--~~~v~~~~P~V~Yr 372 (595)
T TIGR01393 296 AGLYPIDTEDYEDLRDALEKLKLNDASLTYE-PESSPALGFGFRCGFLGLLHMEIIQERLEREF--NLDLITTAPSVIYR 372 (595)
T ss_pred EEEEECCcccHHHHHHHHHHHhccCCeEEEE-ecCCcccccccEEeeeeHHHHHHHHHHHHHHh--CCeeEEecCEEEEE
Confidence 9999999999999999999999999999997 4889888885 99999999999999999 99999999999999
Q ss_pred eecccccceeEEeecCCCceEEEEEEEeCChhhHHHHHcCCCCCCCChHHHHHHhhhhcCCchhccCcEEEeccCCCCCc
Q 004467 475 ETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPN 554 (752)
Q Consensus 475 ETi~~~~~~~~~~~~~~~~~~i~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~P~~~~~n 554 (752)
||+.+.. .++++ .
T Consensus 373 eti~~g~---------------~~~~~---------------------------------------------~------- 385 (595)
T TIGR01393 373 VYLTNGE---------------VIEVD---------------------------------------------N------- 385 (595)
T ss_pred EEecCCc---------------EEEEE---------------------------------------------C-------
Confidence 9987521 01110 0
Q ss_pred eEEecccCccchHHHHHHHHHHHHHHHHcCCcCCCCeeeeEEEEEeeeecccccccCCCchHHHHHHHHHHHHHhCCCeE
Q 004467 555 MVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRL 634 (752)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~d~~~~~~~~~~~a~~~a~~~a~~~a~~~L 634 (752)
| .|+|+.++ -|.|
T Consensus 386 ------------------------------p-~~~p~~~~------------------------------------~~~l 398 (595)
T TIGR01393 386 ------------------------------P-SDLPDPGK------------------------------------IEHV 398 (595)
T ss_pred ------------------------------c-ccCCCccc------------------------------------ccce
Confidence 2 25665441 2789
Q ss_pred EeeEEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhh-cCchHHhhhhCCCceeeeeEecceee
Q 004467 635 LEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES-FGFSGTLRAATSGQAFPQCVFDHWDM 713 (752)
Q Consensus 635 lEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~ 713 (752)
|||||+++|.+|++|+|+|++++++|||++++++..++ +...|+|.+|++|+ +||.++|||+|+|.|+|.++|+||++
T Consensus 399 lEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~~-~~~~i~~~~Plae~~~~~~~~Lks~T~G~gs~~~~~~~Y~~ 477 (595)
T TIGR01393 399 EEPYVKATIITPTEYLGPIMTLCQEKRGVQTNMEYLDP-NRVELIYEMPLAEIVYDFFDKLKSISRGYASFDYELIGYRP 477 (595)
T ss_pred eCCeEEEEEEccHHHHHHHHHHHHHcCCEEeCcEEcCC-CeEEEEEEeccchhhhchhHHhhhhcCCEEEEEEEECCccc
Confidence 99999999999999999999999999999999987543 36899999999997 99999999999999999999999997
Q ss_pred ---------cCCCCCCC----------chHHHHHHHHHH
Q 004467 714 ---------MSSDPLEP----------GTQAAQLVADIR 733 (752)
Q Consensus 714 ---------v~~d~~~~----------~~~~~~~~~~~r 733 (752)
+.++|.|. .+.+++++++++
T Consensus 478 ~~~~~~~~~~n~~~~d~l~~~~~~~~~~~~~~~~~~~l~ 516 (595)
T TIGR01393 478 SDLVKLDILINGEPVDALSFIVHRDKAYSRGREICEKLK 516 (595)
T ss_pred cceEEEEEEECCcccceeEEeeeHHHHHHHHHHHHHHHH
Confidence 34555542 346677777644
No 20
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.4e-67 Score=557.50 Aligned_cols=462 Identities=30% Similarity=0.412 Sum_probs=364.4
Q ss_pred cc-CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCC
Q 004467 15 FK-HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGER 93 (752)
Q Consensus 15 ~~-~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~ 93 (752)
.| +++||++|++|+|||||||+|+||..+|.++.. .+.-++||.++.||||||||++...++.|++
T Consensus 55 ~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~-~~q~q~LDkl~vERERGITIkaQtasify~~------------ 121 (650)
T KOG0462|consen 55 DPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNN-IGQEQVLDKLQVERERGITIKAQTASIFYKD------------ 121 (650)
T ss_pred CchhhccceEEEEEecCCcchHHHHHHHHhCCCCCC-CchhhhhhhhhhhhhcCcEEEeeeeEEEEEc------------
Confidence 45 899999999999999999999999999988875 4445899999999999999999999999982
Q ss_pred CCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh--CCCCcchhhc
Q 004467 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW--GENFFDPATK 164 (752)
Q Consensus 94 ~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld--g~~~~~~~~~ 164 (752)
++.|.+||||||||+||.+||.++|..||||||||||.+|++ .+|.++|+.++.|+||+| +++.
T Consensus 122 -~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adp------ 194 (650)
T KOG0462|consen 122 -GQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADP------ 194 (650)
T ss_pred -CCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCH------
Confidence 457999999999999999999999999999999999999999 667789999999999998 2222
Q ss_pred cccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhh-HhhchHHHHHHHHhccccchHHHHH
Q 004467 165 KWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEE-KDLMGKALMKRVMQTWLPASSALLE 243 (752)
Q Consensus 165 ~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~-~~~~~~~l~~~~~~~~~P~~~~LLd 243 (752)
+..+..++.+ +.++.++ ++.+.+ .-. .+..+|+
T Consensus 195 ------------------------------------e~V~~q~~~l-F~~~~~~~i~vSAK--------~G~-~v~~lL~ 228 (650)
T KOG0462|consen 195 ------------------------------------ERVENQLFEL-FDIPPAEVIYVSAK--------TGL-NVEELLE 228 (650)
T ss_pred ------------------------------------HHHHHHHHHH-hcCCccceEEEEec--------cCc-cHHHHHH
Confidence 1111111111 1111111 111100 001 1467999
Q ss_pred HHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccC
Q 004467 244 MMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGP 323 (752)
Q Consensus 244 ~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~ 323 (752)
+|++.+|+|.. ..++||.+++|..+.|.+.|. ++++||..|.+++||.|..+.
T Consensus 229 AII~rVPpP~~-------------------------~~d~plr~Lifds~yD~y~G~-I~~vrv~~G~vrkGdkV~~~~- 281 (650)
T KOG0462|consen 229 AIIRRVPPPKG-------------------------IRDAPLRMLIFDSEYDEYRGV-IALVRVVDGVVRKGDKVQSAA- 281 (650)
T ss_pred HHHhhCCCCCC-------------------------CCCcchHHHhhhhhhhhhcce-EEEEEEeeeeeecCCEEEEee-
Confidence 99999999942 367999999999999999997 999999999999999999763
Q ss_pred CCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEec-cccccccce-eeccCCC-CCccccccccccCCceEEE
Q 004467 324 NYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVG-LDQFITKNA-TLTNEKE-VDAHPIRAMKFSVSPVVRV 400 (752)
Q Consensus 324 n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~G-l~~~~~~tg-TL~~~~~-~~~~~~~~~~~~~~Pv~~~ 400 (752)
+++. ...+.-.++.+..-...++....+|+|++-.+ +++. ..| |+++... ....+++..+ +..|++++
T Consensus 282 ---t~~~---yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea--~IGdTi~~~~~~~~v~tl~~~~-~~~pMvFv 352 (650)
T KOG0462|consen 282 ---TGKS---YEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEA--QIGDTIAHKSVTKAVETLPGFE-PTKPMVFV 352 (650)
T ss_pred ---cCcc---eEeEEeEEeccCceeeeeecccccceeEecccccccc--cccceeeecccCcccCcCCCCC-CCcceEEe
Confidence 2222 23455566666665566667777788877766 7777 445 8887652 1234455554 34999999
Q ss_pred EEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEcCCC----cEEEEecchhhHHHHHHHHHhhcCCCcEEEEeCcEEEEEee
Q 004467 401 AVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESG----EHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 476 (752)
Q Consensus 401 ~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~etg----e~il~g~GelhLei~~~rL~~~f~~~vev~~s~p~V~yrET 476 (752)
...|.+.+|...|.+++.+|..+|+++.+..+.++ -+.+.++|.|||+|+++||++|| |.++.+++|.|+||=-
T Consensus 353 g~fP~dgsd~~~l~~a~erL~lnd~sv~v~~~~s~aLg~gwr~gflG~LHm~Vf~erle~Ey--g~elivt~PtV~Yr~~ 430 (650)
T KOG0462|consen 353 GLFPLDGSDYETLRDAIERLVLNDESVTVIKESSGALGQGWRLGFLGLLHMEVFIERLEREY--GAELIVTPPTVPYRVV 430 (650)
T ss_pred ccccCccchhhhHHHHHHHHhcccccceeeecCCcccccceEeeccceeeHHHHHHHHHHhc--CceeeecCCcceEEEE
Confidence 99999999999999999999999999999876444 47899999999999999999999 9999999999999854
Q ss_pred cccccceeEEeecCCCceEEEEEEEeCChhhHHHHHcCCCCCCCChHHHHHHhhhhcCCchhccCcEEEeccCCCCCceE
Q 004467 477 VLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMV 556 (752)
Q Consensus 477 i~~~~~~~~~~~~~~~~~~i~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~P~~~~~n~~ 556 (752)
..+.. . +.+..|.
T Consensus 431 ~~~~~-----------~-------------------------------------------------~~i~np~------- 443 (650)
T KOG0462|consen 431 YSNGD-----------E-------------------------------------------------ILISNPA------- 443 (650)
T ss_pred ecCCc-----------e-------------------------------------------------eeecChh-------
Confidence 32210 0 0001110
Q ss_pred EecccCccchHHHHHHHHHHHHHHHHcCCcCCCCeeeeEEEEEeeeecccccccCCCchHHHHHHHHHHHHHhCCCeEEe
Q 004467 557 VDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLE 636 (752)
Q Consensus 557 ~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~d~~~~~~~~~~~a~~~a~~~a~~~a~~~LlE 636 (752)
.+| |..... -.||
T Consensus 444 -------------------------------~fp---------------~~~~v~---------------------~~lE 456 (650)
T KOG0462|consen 444 -------------------------------LFP---------------DPSDVK---------------------EFLE 456 (650)
T ss_pred -------------------------------hCC---------------Ccccch---------------------hhcC
Confidence 011 100110 1399
Q ss_pred eEEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhhcC-chHHhhhhCCCceeeeeEecceeecC
Q 004467 637 PVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFG-FSGTLRAATSGQAFPQCVFDHWDMMS 715 (752)
Q Consensus 637 Pi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~g-y~~~Lrs~T~G~~~~~~~f~~y~~v~ 715 (752)
|+...+|.+|+||+|.|+..++.|||...++...++ +...++-++|++|+.| |-..|.|.|+|-|+|..+|++|+ +
T Consensus 457 P~v~~tii~P~Ey~G~Vi~Lc~~rRgeq~dm~~i~~-nr~~lky~lPl~elv~df~~~lks~tsGyAs~dye~~gY~--~ 533 (650)
T KOG0462|consen 457 PYVEATIITPDEYVGAVIELCSERRGEQKDMTYIDG-NRVMLKYQLPLRELVGDFFDRLKSLTSGYASFDYEDAGYQ--A 533 (650)
T ss_pred ceEEEEEECcHHHHHHHHHHHHHhhhheecceeccC-CeEEEEEecChHHHHHHHHHHHhccccceeEEeecccccc--c
Confidence 999999999999999999999999999999998877 4889999999999998 99999999999999999999999 4
Q ss_pred CC
Q 004467 716 SD 717 (752)
Q Consensus 716 ~d 717 (752)
+|
T Consensus 534 sd 535 (650)
T KOG0462|consen 534 SD 535 (650)
T ss_pred cc
Confidence 54
No 21
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=9e-65 Score=531.29 Aligned_cols=461 Identities=28% Similarity=0.441 Sum_probs=365.0
Q ss_pred ccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCC
Q 004467 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (752)
Q Consensus 15 ~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~ 94 (752)
..++|||++|++|+|||||||+++||..+|.++.+.+. ..++|+++.||||||||++..+++.|+. .+
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~-~Q~LDsMdiERERGITIKaq~v~l~Yk~-----------~~ 72 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMR-AQVLDSMDIERERGITIKAQAVRLNYKA-----------KD 72 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHH-HHhhhhhhhHhhcCceEEeeEEEEEEEe-----------CC
Confidence 45789999999999999999999999999999887665 4799999999999999999999999984 23
Q ss_pred CCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh--CCCCcchhhcc
Q 004467 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW--GENFFDPATKK 165 (752)
Q Consensus 95 ~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld--g~~~~~~~~~~ 165 (752)
++.|.+||||||||+||+.||.|+|.+|.||+|||||+.|++ .+|-..++.++-++||+| .++..
T Consensus 73 g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpe------ 146 (603)
T COG0481 73 GETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPE------ 146 (603)
T ss_pred CCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHH------
Confidence 468999999999999999999999999999999999999999 555677888888999998 11110
Q ss_pred ccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHHhccccchHHHHHHH
Q 004467 166 WTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMM 245 (752)
Q Consensus 166 ~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~~~P~~~~LLd~i 245 (752)
...+.++. -+|++.++. +..+ ++.-+ .++.+|++|
T Consensus 147 --------------------------------rvk~eIe~---~iGid~~da-v~~S--------AKtG~-gI~~iLe~I 181 (603)
T COG0481 147 --------------------------------RVKQEIED---IIGIDASDA-VLVS--------AKTGI-GIEDVLEAI 181 (603)
T ss_pred --------------------------------HHHHHHHH---HhCCCcchh-eeEe--------cccCC-CHHHHHHHH
Confidence 00111222 223332111 1000 01111 246799999
Q ss_pred HhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCC
Q 004467 246 IFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNY 325 (752)
Q Consensus 246 ~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~ 325 (752)
++.+|+|. | ++++||.|++|..+-|++.|- ++++||+.|++++||++.++..
T Consensus 182 v~~iP~P~------------g-------------~~~~pLkALifDS~yD~Y~GV-v~~vRi~dG~ik~gdki~~m~t-- 233 (603)
T COG0481 182 VEKIPPPK------------G-------------DPDAPLKALIFDSWYDNYLGV-VVLVRIFDGTLKKGDKIRMMST-- 233 (603)
T ss_pred HhhCCCCC------------C-------------CCCCcceEEEEeccccccceE-EEEEEEeeceecCCCEEEEEec--
Confidence 99999993 2 678999999999999999996 9999999999999999998852
Q ss_pred CCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEE-ecccccc-ccce-eeccCCCCCccccccccccCCceEEEEE
Q 004467 326 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM-VGLDQFI-TKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAV 402 (752)
Q Consensus 326 ~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai-~Gl~~~~-~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~~~i 402 (752)
+++ -.|.++-++.- +..+++++.||+++.+ +|++++. ++.| |+++...+...++++.+- .+|++++.+
T Consensus 234 --g~~-----y~V~evGvftP-~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~p~~e~LpGfk~-~~P~Vf~Gl 304 (603)
T COG0481 234 --GKE-----YEVDEVGIFTP-KMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASNPATEPLPGFKE-VKPMVFAGL 304 (603)
T ss_pred --CCE-----EEEEEEeeccC-CccccccccCCceeEEEEeeeecccCcccceEeccCCCccccCCCCCc-CCceEEEee
Confidence 222 35555555544 7788999999999876 4665531 2445 777554446678888875 499999999
Q ss_pred EeCCCCCHhHHHHHHHHHHhcCCeEEEEEcCCCcEEEEe-----cchhhHHHHHHHHHhhcCCCcEEEEeCcEEEEEeec
Q 004467 403 QCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAG-----AGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV 477 (752)
Q Consensus 403 ~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~etge~il~g-----~GelhLei~~~rL~~~f~~~vev~~s~p~V~yrETi 477 (752)
.|.+..|++.|.+||.||...|.+|.++. ||.+.+-.| +|-|||||+.+||.|+| ++++....|.|.|+=..
T Consensus 305 yPid~~dye~LrdAleKL~LNDasl~~E~-EtS~ALGfGfRcGFLGlLHmeiiqERLeREf--~ldlI~TaPsV~Y~v~~ 381 (603)
T COG0481 305 YPVDSDDYEDLRDALEKLQLNDASLTYEP-ETSQALGFGFRCGFLGLLHMEIIQERLEREF--DLDLITTAPSVVYKVEL 381 (603)
T ss_pred cccChhHHHHHHHHHHhcccccceeeecc-ccchhccCceeehhhhHHHHHHHHHHHHHhh--CcceEecCCceEEEEEE
Confidence 99999999999999999999999999863 666655544 89999999999999999 99999999999999765
Q ss_pred ccccceeEEeecCCCceEEEEEEEeCChhhHHHHHcCCCCCCCChHHHHHHhhhhcCCchhccCcEEEeccCCCCCceEE
Q 004467 478 LEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVV 557 (752)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~i~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~P~~~~~n~~~ 557 (752)
++..+. .+ + .|.
T Consensus 382 ~~g~~~---------------~i-----------~----------------------------------NPs-------- 393 (603)
T COG0481 382 TDGEEI---------------EV-----------D----------------------------------NPS-------- 393 (603)
T ss_pred cCCcEE---------------Ee-----------c----------------------------------ChH--------
Confidence 542100 00 0 010
Q ss_pred ecccCccchHHHHHHHHHHHHHHHHcCCcCCCCeeeeEEEEEeeeecccccccCCCchHHHHHHHHHHHHHhCCCeEEee
Q 004467 558 DMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEP 637 (752)
Q Consensus 558 ~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~d~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEP 637 (752)
.+| |. .++ -.+.||
T Consensus 394 ------------------------------~~P---------------~~-----~~I----------------~~i~EP 407 (603)
T COG0481 394 ------------------------------DLP---------------DP-----NKI----------------EEIEEP 407 (603)
T ss_pred ------------------------------hCC---------------Ch-----hhh----------------heeeCc
Confidence 111 00 000 134899
Q ss_pred EEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhh-cCchHHhhhhCCCceeeeeEecceee
Q 004467 638 VYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES-FGFSGTLRAATSGQAFPQCVFDHWDM 713 (752)
Q Consensus 638 i~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~ 713 (752)
+.+++|.+|++|+|.|+...+.+||.-.+++..+. +...+.-.+|++|. ++|-+.|.|.|.|-|+|..+|.+|++
T Consensus 408 ~v~~~ii~P~eylG~vm~Lcq~kRG~~~~m~yl~~-~rv~l~Y~lPl~Eiv~DFfDkLKS~skGYAS~DYe~~~y~~ 483 (603)
T COG0481 408 YVKATIITPQEYLGNVMELCQEKRGIQIDMEYLDQ-NRVMLTYELPLAEIVFDFFDKLKSISKGYASFDYEFIGYRE 483 (603)
T ss_pred eeEEEEeCcHHHHHHHHHHHHHhcCceecceEecC-ceEEEEEecchHHHHHHHhHhhhccccceeeeccccccccc
Confidence 99999999999999999999999999999887653 58899999999996 59999999999999999999999986
No 22
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-64 Score=524.32 Aligned_cols=455 Identities=24% Similarity=0.423 Sum_probs=371.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
+.+|||||++|||||||||++.||..+|..+.+..-.-++||+.+.||||||||-+....+.|+
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~---------------- 66 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYN---------------- 66 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecC----------------
Confidence 5799999999999999999999999999987732222379999999999999999999999997
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhhCCCCcchhhcccccc
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLWGENFFDPATKKWTTK 169 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkldg~~~~~~~~~~~~~~ 169 (752)
+++||++|||||.||.+||+|.|+..|++||+|||.+|+. +-|-++|++.|+++||+|..+- +
T Consensus 67 ~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~A----------r 136 (603)
T COG1217 67 GTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDA----------R 136 (603)
T ss_pred CeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCC----------C
Confidence 8999999999999999999999999999999999999987 6677789999999999982111 0
Q ss_pred CCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCC----CChhhHhhchHHHHHHHHhccccchHHHHHHH
Q 004467 170 NTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVT----MKSEEKDLMGKALMKRVMQTWLPASSALLEMM 245 (752)
Q Consensus 170 ~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~----l~~~~~~~~~~~l~~~~~~~~~P~~~~LLd~i 245 (752)
+ +++.+..++|+.++-..++++=-+.+-..+.. ++.++. --..++|++.|
T Consensus 137 --------p---~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~---------------~~~m~pLfe~I 190 (603)
T COG1217 137 --------P---DEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDE---------------ADDMAPLFETI 190 (603)
T ss_pred --------H---HHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCcccc---------------ccchhHHHHHH
Confidence 0 01112233333332222222100100000000 000000 00147999999
Q ss_pred HhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCC
Q 004467 246 IFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNY 325 (752)
Q Consensus 246 ~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~ 325 (752)
+++.|+|.. +.++||.+.|+-+..+++.|+ +..+||++|++++|+.|.++..+
T Consensus 191 ~~hvp~P~~-------------------------~~d~PlQ~qvt~Ldyn~y~Gr-IgigRi~~G~vk~~q~V~~i~~~- 243 (603)
T COG1217 191 LDHVPAPKG-------------------------DLDEPLQMQVTQLDYNSYVGR-IGIGRIFRGTVKPNQQVALIKSD- 243 (603)
T ss_pred HHhCCCCCC-------------------------CCCCCeEEEEEeeccccccce-eEEEEEecCcccCCCeEEEEcCC-
Confidence 999999941 578999999999988999998 99999999999999999988532
Q ss_pred CCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeccCCCCCccccccccccCCceEEEEEEe
Q 004467 326 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQC 404 (752)
Q Consensus 326 ~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~Gl~~~~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~~~i~p 404 (752)
+ .....||.+++-+.|-++.++++|.||||+||+|+++. ..| |+|++. .+.+++.+... +|.+++.+..
T Consensus 244 --g---~~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~--~igdTi~d~~--~~~aLp~l~iD-ePTlsMtf~v 313 (603)
T COG1217 244 --G---TTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDI--NIGDTICDPD--NPEALPALSVD-EPTLSMTFSV 313 (603)
T ss_pred --C---cEEeeEEEeeeeccceeeeecccccccCEEEEcCcccc--cccccccCCC--CccCCCCcccC-CCceEEEEEe
Confidence 2 23347999999999999999999999999999999998 445 999998 78888888776 8988888854
Q ss_pred CC---------CCCHhHHHHHHHHHHhcCCeEEEEEc-CCCcEEEEecchhhHHHHHHHHHhhcCCCcEEEEeCcEEEEE
Q 004467 405 KV---------ASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFR 474 (752)
Q Consensus 405 ~~---------~~d~~kL~~~L~~L~~eDPsl~v~~~-etge~il~g~GelhLei~~~rL~~~f~~~vev~~s~p~V~yr 474 (752)
.+ .-...++.+.|.+-.+.+.+|+|+.- +-..+.++|.|||||-|+++.|||+ |.|+.+|.|+|.||
T Consensus 314 N~SPfAG~EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd~f~VsGRGELhLsILiE~MRRE---GfEl~VsrP~Vi~k 390 (603)
T COG1217 314 NDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEETESPDAFEVSGRGELHLSILIENMRRE---GFELQVSRPEVIIK 390 (603)
T ss_pred cCCCCCCcCCceeeHHHHHHHHHHHhhhceeEEEeecCCCCeEEEeccceeehHHHHHHhhhc---ceEEEecCceEEEE
Confidence 32 23456899999999999999999754 5688999999999999999999999 99999999999999
Q ss_pred eecccccceeEEeecCCCceEEEEEEEeCChhhHHHHHcCCCCCCCChHHHHHHhhhhcCCchhccCcEEEeccCCCCCc
Q 004467 475 ETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPN 554 (752)
Q Consensus 475 ETi~~~~~~~~~~~~~~~~~~i~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~P~~~~~n 554 (752)
| +.+ .
T Consensus 391 e-idG-----------------------------------~--------------------------------------- 395 (603)
T COG1217 391 E-IDG-----------------------------------V--------------------------------------- 395 (603)
T ss_pred e-cCC-----------------------------------c---------------------------------------
Confidence 8 211 0
Q ss_pred eEEecccCccchHHHHHHHHHHHHHHHHcCCcCCCCeeeeEEEEEeeeecccccccCCCchHHHHHHHHHHHHHhCCCeE
Q 004467 555 MVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRL 634 (752)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~d~~~~~~~~~~~a~~~a~~~a~~~a~~~L 634 (752)
.
T Consensus 396 -------------------------------------------------------------------------------~ 396 (603)
T COG1217 396 -------------------------------------------------------------------------------K 396 (603)
T ss_pred -------------------------------------------------------------------------------C
Confidence 1
Q ss_pred EeeEEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhhcCchHHhhhhCCCceeeeeEecceeec
Q 004467 635 LEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMM 714 (752)
Q Consensus 635 lEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v 714 (752)
+||+-.+.|-||+++.|.|+..|..|+|...++.+.. .++..+.-.+|.+-++||.+++-++|+|.|.....|+||++.
T Consensus 397 ~EP~E~v~iDv~ee~~G~Vie~lg~RKgem~~M~~~g-~G~~Rlef~iPaRGLIGfrteFlt~TrG~Gi~n~~F~~Y~p~ 475 (603)
T COG1217 397 CEPFEEVTIDVPEEHQGAVIEKLGERKGEMKDMAPDG-KGRVRLEFVIPARGLIGFRTEFLTMTRGTGIMNHSFDHYRPV 475 (603)
T ss_pred cCcceeEEecCchhhhhHHHHHHhhhhHhHhhcccCC-CCeEEEEEEccCcceeccchheeeccccceeeeecccccccc
Confidence 5688888899999999999999999999999998864 479999999999999999999999999999999999999999
Q ss_pred CCCC
Q 004467 715 SSDP 718 (752)
Q Consensus 715 ~~d~ 718 (752)
.++.
T Consensus 476 ~g~i 479 (603)
T COG1217 476 KGEI 479 (603)
T ss_pred cccc
Confidence 8864
No 23
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=2.1e-62 Score=553.91 Aligned_cols=409 Identities=23% Similarity=0.329 Sum_probs=328.3
Q ss_pred hcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC--------ccccCCchhHhHhcceeccceEEEEEeeccc
Q 004467 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD--------VRMTDTRADEAERGITIKSTGISLYYEMTDD 84 (752)
Q Consensus 13 ~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~--------~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~ 84 (752)
+...+++|||+|+||+|||||||+++|++.+|.+++ .|. ..++|++++|++||||+.++..++.|+
T Consensus 4 ~~~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~--~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~---- 77 (526)
T PRK00741 4 AQEVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQE--AGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYR---- 77 (526)
T ss_pred cchhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccc--cceeeccccCccccCCCcHHHHhhCCceeeeeEEEEEC----
Confidence 445578999999999999999999999999999876 343 346999999999999999999999996
Q ss_pred hhccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh--C
Q 004467 85 ALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW--G 155 (752)
Q Consensus 85 ~~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld--g 155 (752)
++.+||+|||||.||..++.++++.+|+||+|||+++|++ .++...++|+++|+||+| +
T Consensus 78 ------------~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 78 ------------DCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDG 145 (526)
T ss_pred ------------CEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccc
Confidence 7999999999999999999999999999999999999876 567778999999999999 5
Q ss_pred CCCcchhh---cccccc------CCCCccccCcceeeEechHH----------HHHHHhhccchhhHHHHHHHcCCCCCh
Q 004467 156 ENFFDPAT---KKWTTK------NTGSATCKRGFVQFCYEPIK----------QIINTCMNDQKDKLWPMLQKLGVTMKS 216 (752)
Q Consensus 156 ~~~~~~~~---~~~~~~------~~g~~~~~~~fv~~~l~~i~----------~l~~~~~~~~~~~l~~~l~~l~~~l~~ 216 (752)
+++.+.+. ..++.. |+|.+..+.++++++....+ .+.+.+++.+++++++|++. ..+
T Consensus 146 a~~~~~l~~i~~~l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~--~~~-- 221 (526)
T PRK00741 146 REPLELLDEIEEVLGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGE--DLA-- 221 (526)
T ss_pred cCHHHHHHHHHHHhCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcc--cHH--
Confidence 67654433 233332 25555556677776643322 12344566677788888765 211
Q ss_pred hhHh----h---c-hHHHHHHHH-hccccc----------hHHHHHHHHhcCCCchhhhhhhhhcccCCCCccccccccc
Q 004467 217 EEKD----L---M-GKALMKRVM-QTWLPA----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIR 277 (752)
Q Consensus 217 ~~~~----~---~-~~~l~~~~~-~~~~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~ 277 (752)
+++. + . .....+++. ..++|+ ++.|||++++++|+|.++... ....
T Consensus 222 ~~l~~~lel~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~---------------~~~~ 286 (526)
T PRK00741 222 EQLREELELVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTD---------------EREV 286 (526)
T ss_pred HHHHHHHHhhhhcccchhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCccccc---------------ceee
Confidence 1110 0 0 011122222 567886 799999999999999643210 0011
Q ss_pred ccCCCCCeEEEEEEEee---cCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeecc
Q 004467 278 NCDPNGPLMLYVSKMIP---ASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVED 354 (752)
Q Consensus 278 ~~~~~~pl~~~V~Kv~~---~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~e 354 (752)
. ..+.||+++|||+.. +++.|+ ++|+|||||+|++||.|++ .+++++ +|+++++.++|.++.+|++
T Consensus 287 ~-~~~~~~~~~VFK~~~~m~~~~~gr-lafvRV~sG~l~~g~~v~~----~~~~k~-----~ri~~~~~~~g~~~~~v~~ 355 (526)
T PRK00741 287 E-PTEEKFSGFVFKIQANMDPKHRDR-IAFVRVCSGKFEKGMKVRH----VRTGKD-----VRISNALTFMAQDREHVEE 355 (526)
T ss_pred c-CCCCceEEEEEEEEecCCCCcCce-EEEEEEeccEECCCCEEEe----ccCCce-----EEecceEEEecCCceECce
Confidence 1 235679999999984 457787 9999999999999999994 334443 7999999999999999999
Q ss_pred ccCCCEEEEeccccccccce-eeccCCCCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEc-
Q 004467 355 VPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE- 432 (752)
Q Consensus 355 a~AGdIvai~Gl~~~~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~- 432 (752)
|.||||+++.|++++ ++| ||++.+ +..++++.++ +|+++++|+|++++|.+||.+||++|++||| +++..+
T Consensus 356 a~aGDIv~v~~l~~~--~~GDTL~~~~---~~~~~~i~~~-~P~~~~~v~p~~~~d~~kl~~aL~~L~eED~-l~~~~~~ 428 (526)
T PRK00741 356 AYAGDIIGLHNHGTI--QIGDTFTQGE---KLKFTGIPNF-APELFRRVRLKNPLKQKQLQKGLVQLSEEGA-VQVFRPL 428 (526)
T ss_pred eCCCCEEEEECCCCC--ccCCCccCCC---ccccCCCCCC-CccEEEEEEECCchhHHHHHHHHHHHhhcCC-eEEEECC
Confidence 999999999999997 677 998755 4567777776 9999999999999999999999999999995 999887
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhhcCCCcEEEEeCcEEEEEeecc
Q 004467 433 ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVL 478 (752)
Q Consensus 433 etge~il~g~GelhLei~~~rL~~~f~~~vev~~s~p~V~yrETi~ 478 (752)
+|+|++|+|||+|||||+++||+++| |+++.+++|+|++---|.
T Consensus 429 ~t~e~il~g~G~lhleV~~~RL~~ey--~v~v~~~~~~v~~~rw~~ 472 (526)
T PRK00741 429 DNNDLILGAVGQLQFEVVAHRLKNEY--NVEAIYEPVGVATARWVE 472 (526)
T ss_pred CCCCEEEEEEeHHHHHHHHHHHHHHh--CCEEEEecCCccEEEEEe
Confidence 89999999999999999999999999 999999999999987764
No 24
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=5.6e-61 Score=542.35 Aligned_cols=404 Identities=20% Similarity=0.314 Sum_probs=311.1
Q ss_pred HhhcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC--------ccccCCchhHhHhcceeccceEEEEEeec
Q 004467 11 RIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD--------VRMTDTRADEAERGITIKSTGISLYYEMT 82 (752)
Q Consensus 11 ~~~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~--------~~~~D~~~~E~eRgiTi~s~~~~~~~~~~ 82 (752)
.++....++|||+|+||+|||||||+++||+.+|.|++ .|. .+++|++++|++||||+.++..++.|.
T Consensus 3 ~~~~~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~--~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~-- 78 (527)
T TIGR00503 3 DLLKEVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQT--AGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYR-- 78 (527)
T ss_pred hhhhhhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccc--cceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeC--
Confidence 45666789999999999999999999999999999876 332 368999999999999999999999996
Q ss_pred cchhccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh-
Q 004467 83 DDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW- 154 (752)
Q Consensus 83 ~~~~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld- 154 (752)
++++||+|||||.||..++.++++.+|+||+|||++.|++ .+++..++|+++|+||+|
T Consensus 79 --------------~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~ 144 (527)
T TIGR00503 79 --------------DCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDR 144 (527)
T ss_pred --------------CeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccc
Confidence 7999999999999999999999999999999999999876 556678999999999999
Q ss_pred -CCCCcchhh---ccccccC------CCCccccCcceeeEechHHHH---------------------HHHhhccchhhH
Q 004467 155 -GENFFDPAT---KKWTTKN------TGSATCKRGFVQFCYEPIKQI---------------------INTCMNDQKDKL 203 (752)
Q Consensus 155 -g~~~~~~~~---~~~~~~~------~g~~~~~~~fv~~~l~~i~~l---------------------~~~~~~~~~~~l 203 (752)
++++.+... ..++..+ +|.+....++++++....|.. .+.++. .+.+
T Consensus 145 ~~~~~~~ll~~i~~~l~~~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~--~~~~ 222 (527)
T TIGR00503 145 DIRDPLELLDEVENELKINCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVG--SDLA 222 (527)
T ss_pred cCCCHHHHHHHHHHHhCCCCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhh--HHHH
Confidence 456554433 2222221 444334445554443221100 000000 0111
Q ss_pred HHHHHHcCCCCChhhHhhchHHHHHHHHhccccc----------hHHHHHHHHhcCCCchhhhhhhhhcccCCCCccccc
Q 004467 204 WPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPA----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYA 273 (752)
Q Consensus 204 ~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~~~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~ 273 (752)
+++.+.+ ..+....-.++.+.+ ....++|+ ++.|||++++++|+|.++...
T Consensus 223 ~~~~~~l-e~~~~~~~~~~~~~~---~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~--------------- 283 (527)
T TIGR00503 223 QQLRDEL-ELVEGASNEFDLAAF---HGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSD--------------- 283 (527)
T ss_pred HHHHHHH-HHHhhhccccCHHHH---hcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCC---------------
Confidence 2221111 000000000111111 12467786 799999999999999643210
Q ss_pred ccccccCCCCCeEEEEEEEee--c-CCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCcee
Q 004467 274 NAIRNCDPNGPLMLYVSKMIP--A-SDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQE 350 (752)
Q Consensus 274 ~~i~~~~~~~pl~~~V~Kv~~--~-~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~ 350 (752)
..... ..++||+++|||+.. + ++.|+ ++|+|||||+|++|++|+. .+++++ +|+++++.++|.++.
T Consensus 284 ~~~~~-~~~~~~~~~VFK~~~~mdp~~~gr-iaf~RV~sG~l~~g~~v~~----~~~~k~-----~ri~~~~~~~g~~~~ 352 (527)
T TIGR00503 284 TRTVE-PTEEKFSGFVFKIQANMDPKHRDR-VAFMRVVSGKYEKGMKLKH----VRTGKD-----VVISDALTFMAGDRE 352 (527)
T ss_pred ceecC-CCCCCeeEEEEEEEeccCcccCce-EEEEEEeeeEEcCCCEEEe----cCCCCc-----EEecchhhhhcCCce
Confidence 00111 246789999999987 6 47887 9999999999999999994 334443 799999999999999
Q ss_pred eeccccCCCEEEEeccccccccce-eeccCCCCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEE
Q 004467 351 TVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVC 429 (752)
Q Consensus 351 ~V~ea~AGdIvai~Gl~~~~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v 429 (752)
+|++|.||||+++.|++++ ++| |||+.. ...++++.++ +|+++++|+|++++|.+||.+||++|++||| +++
T Consensus 353 ~v~~a~aGDI~~~~~~~~~--~~GDtl~~~~---~~~~~~i~~~-~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v 425 (527)
T TIGR00503 353 HVEEAYAGDIIGLHNHGTI--QIGDTFTQGE---KIKFTGIPNF-APELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQV 425 (527)
T ss_pred EcceeCCCCEEEEECCCCc--ccCCEecCCC---ceeecCCCCC-CcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEE
Confidence 9999999999999999987 677 999844 4566777776 9999999999999999999999999999998 899
Q ss_pred EEc-CCCcEEEEecchhhHHHHHHHHHhhcCCCcEEEEeCcEEEE
Q 004467 430 TIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSF 473 (752)
Q Consensus 430 ~~~-etge~il~g~GelhLei~~~rL~~~f~~~vev~~s~p~V~y 473 (752)
..+ +|+|++|+|||+|||||+++||+++| |+++.+++|+|+.
T Consensus 426 ~~~~~t~e~il~g~GelhleV~~~RL~~ey--~v~v~~~~~~v~~ 468 (527)
T TIGR00503 426 FRPLDNNDLIVGAVGVLQFDVVVYRLKEEY--NVEARYEPVNVAT 468 (527)
T ss_pred EEcCCCCCEEEEEEeHHHHHHHHHHHHHHh--CCeEEEeCCCceE
Confidence 887 89999999999999999999999999 9999999999985
No 25
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.2e-50 Score=416.91 Aligned_cols=401 Identities=22% Similarity=0.333 Sum_probs=292.6
Q ss_pred ccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC--------ccccCCchhHhHhcceeccceEEEEEeeccchh
Q 004467 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD--------VRMTDTRADEAERGITIKSTGISLYYEMTDDAL 86 (752)
Q Consensus 15 ~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~--------~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~ 86 (752)
..++-|++|||.|+|||||||+|.||...|.|.. +|. -..+||++.||+|||||.|++.+|.|.
T Consensus 8 Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~--AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~------ 79 (528)
T COG4108 8 EVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQE--AGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYA------ 79 (528)
T ss_pred HHhhhcceeEEecCCCCcccHHHHHHHhcchhhh--cceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccC------
Confidence 3467899999999999999999999999999877 554 358999999999999999999999996
Q ss_pred ccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh--CCC
Q 004467 87 KSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW--GEN 157 (752)
Q Consensus 87 ~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld--g~~ 157 (752)
++.|||+|||||.||+..+.|.|.++|.||.||||..|++ ..|+..++|++.|+|||| +-+
T Consensus 80 ----------~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rd 149 (528)
T COG4108 80 ----------DCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRD 149 (528)
T ss_pred ----------CeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCC
Confidence 8999999999999999999999999999999999999998 777888999999999999 334
Q ss_pred Ccchh---hcccc--ccC----CCCccccCcceeeEechHHHHHHHh----------h-ccc---------hhhHHHHHH
Q 004467 158 FFDPA---TKKWT--TKN----TGSATCKRGFVQFCYEPIKQIINTC----------M-NDQ---------KDKLWPMLQ 208 (752)
Q Consensus 158 ~~~~~---~~~~~--~~~----~g~~~~~~~fv~~~l~~i~~l~~~~----------~-~~~---------~~~l~~~l~ 208 (752)
.++.+ ++.+. ..| +|.+..+++.-++....+. +|+.- . ..+ +...+++.+
T Consensus 150 P~ELLdEiE~~L~i~~~PitWPIG~gk~F~Gvy~l~~~~v~-~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~e 228 (528)
T COG4108 150 PLELLDEIEEELGIQCAPITWPIGMGKDFKGVYHLYNDEVE-LYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLRE 228 (528)
T ss_pred hHHHHHHHHHHhCcceecccccccCCcccceeeeeccCEEE-EeccCCCccccccccccCCCChhHHhhhchHHHHHHHH
Confidence 43333 23222 222 5553344443332211110 00000 0 000 001111111
Q ss_pred HcCCCCChhh-HhhchHHHHHHHHhccccc----------hHHHHHHHHhcCCCchhhhhhhhhcccCCCCccccccccc
Q 004467 209 KLGVTMKSEE-KDLMGKALMKRVMQTWLPA----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIR 277 (752)
Q Consensus 209 ~l~~~l~~~~-~~~~~~~l~~~~~~~~~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~ 277 (752)
.+ .|-... -.++...++. ....|+ ++.+|++++++.|+|...+.. ....
T Consensus 229 e~--EL~~~a~~~Fd~~~fl~---G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~---------------~~~v 288 (528)
T COG4108 229 EL--ELVQGAGNEFDLEAFLA---GELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQAD---------------TREV 288 (528)
T ss_pred HH--HHHHhhccccCHHHHhc---CCccceEehhhhhccCHHHHHHHHHhhCCCCCcccCC---------------cCcc
Confidence 10 000000 0011111111 233454 789999999999999543210 0011
Q ss_pred ccCCCCCeEEEEEEEeecCCCC--ceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccc
Q 004467 278 NCDPNGPLMLYVSKMIPASDKG--RFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDV 355 (752)
Q Consensus 278 ~~~~~~pl~~~V~Kv~~~~~~g--~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea 355 (752)
. ..+..|.++|||+...-+.. .+++|+||.||.+.+|+++.. .++++. .++..-..+++++++.+++|
T Consensus 289 ~-p~e~kfsGFVFKIQANMDp~HRDRIAFmRv~SGkferGMkv~h----~rtGK~-----~~ls~~~~f~A~dRe~ve~A 358 (528)
T COG4108 289 E-PTEDKFSGFVFKIQANMDPKHRDRIAFMRVCSGKFERGMKVTH----VRTGKD-----VKLSDALTFMAQDRETVEEA 358 (528)
T ss_pred c-CCCCccceEEEEEEcCCCcccccceeEEEeccccccCCceeee----eecCCc-----eEecchHhhhhhhhhhhhhc
Confidence 1 23445999999998754432 139999999999999999984 345554 68888888999999999999
Q ss_pred cCCCEEEEeccccccccce-eeccCCCCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEcCC
Q 004467 356 PCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEES 434 (752)
Q Consensus 356 ~AGdIvai~Gl~~~~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~et 434 (752)
.||||++|..-..+ ..| |++... ...+++++.. .|-++..|..+++...++|.+||.+|++|-..--++...+
T Consensus 359 ~aGDIIGl~nhG~~--~IGDT~t~Ge---~l~f~giP~F-aPE~frrvr~kd~~K~Kql~Kgl~QL~eEGavQ~f~p~~~ 432 (528)
T COG4108 359 YAGDIIGLHNHGTI--QIGDTFTEGE---KLKFTGIPNF-APELFRRVRLKDPLKQKQLKKGLEQLAEEGAVQVFKPLDG 432 (528)
T ss_pred cCCCeEeccCCCce--eecceeecCc---eeeecCCCCC-CHHHHHHHhcCChHHHHHHHHHHHHHhhcCeeEEEecCCC
Confidence 99999999754444 445 887764 4566666554 8999999999999999999999999999998776665578
Q ss_pred CcEEEEecchhhHHHHHHHHHhhcCCCcEEEEeCcEEE
Q 004467 435 GEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVS 472 (752)
Q Consensus 435 ge~il~g~GelhLei~~~rL~~~f~~~vev~~s~p~V~ 472 (752)
.+.+|...|.||+||+.+||+++| |+++.+.+..++
T Consensus 433 ~d~IlGAVG~LQFeV~~~RL~~EY--~ve~~~e~~~~~ 468 (528)
T COG4108 433 NDLILGAVGQLQFEVVQARLKNEY--NVEAVFEPVNFS 468 (528)
T ss_pred CCceEEeeeeeehHHHHHHHHhhh--CCeEEEeeccce
Confidence 999999999999999999999999 999999764443
No 26
>cd01683 EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome. The protein is structurally closely related to the eukaryotic translational elongation factor EF2. This domain has been also identified in 114kD U5-specific protein of Saccharomyces cerevisiae and may play an important role either in splicing process itself or the recycling of spliceosomal snRNP.
Probab=100.00 E-value=1.5e-39 Score=316.55 Aligned_cols=174 Identities=47% Similarity=0.857 Sum_probs=166.2
Q ss_pred CcEEEEEeecccccceeEEeecCCCceEEEEEEEeCChhhHHHHHcCCCCCCCChHHHHHHhhhhcCCchhccCcEEEec
Q 004467 468 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFG 547 (752)
Q Consensus 468 ~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~ 547 (752)
+|.|+|||||.+.+...+..+++|+|+++|+++|||++++.++|++|.++..++.+.+.+.|+.+||||.+++++||+||
T Consensus 1 ~P~V~f~ETv~~~s~~~~~~ks~nk~n~i~~~aepL~~~l~~~i~~g~~~~~~~~~~~~~~l~~~~~wd~~~~~~iw~fg 80 (178)
T cd01683 1 DPVVTFCETVVETSSAKCFAETPNKKNKITMIAEPLDKGLAEDIENGQLKLSWNRKKLGKFLRTKYGWDALAARSIWAFG 80 (178)
T ss_pred CCcceEEeeccccCCCceeeECCCcccEEEEEEEeCCHHHHHHHHcCCCCcCcCHHHHHHHHHHHhCCCHHHhcCeEEEc
Confidence 69999999999998888899999999999999999999999999999998888999999999999999999999999999
Q ss_pred cCCCCCceEEeccc----CccchHHHHHHHHHHHHHHHHcCCcCCCCeeeeEEEEEeeeecccccccCCCchHHHHHHHH
Q 004467 548 PETTGPNMVVDMCK----GVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVI 623 (752)
Q Consensus 548 P~~~~~n~~~~~~~----~~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~d~~~~~~~~~~~a~~~a~ 623 (752)
|++.|+|+|+|++. +.+++.+++++|++||+||+++|||||+||+||+|+|.|+.+|.|+.+++.+|+++|+|+||
T Consensus 81 P~~~g~Nilvd~t~~~~~~~~~~~~~~~sI~~Gf~~a~~~GPL~gepv~gv~v~l~d~~~~~d~~~~~~~qi~~aar~a~ 160 (178)
T cd01683 81 PDTKGPNVLIDDTLPEEVDKNLLNSVKESIVQGFQWAVREGPLCEEPIRNVKFKLLDADIASEPIDRGGGQIIPTARRAC 160 (178)
T ss_pred CCCCCCeEEEecCcCcccchhhHHHHHHHHHHHHHHHHHcCCcCCCeeecEEEEEEEeeeccccCCCchHHHHHHHHHHH
Confidence 99999999999887 55688999999999999999999999999999999999999998888888999999999999
Q ss_pred HHHHHhCCCeEEeeEEEE
Q 004467 624 YASQLTAKPRLLEPVYMV 641 (752)
Q Consensus 624 ~~a~~~a~~~LlEPi~~~ 641 (752)
++|+++|+|+||||||.|
T Consensus 161 ~~a~l~a~prLLEPim~v 178 (178)
T cd01683 161 YSAFLLATPRLMEPIYEV 178 (178)
T ss_pred HHHHHHCCCEEEcceEeC
Confidence 999999999999999985
No 27
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-38 Score=331.38 Aligned_cols=277 Identities=23% Similarity=0.335 Sum_probs=217.6
Q ss_pred ccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccc----------cCCC-----ccccCCchhHhHhcceeccceEEEEE
Q 004467 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRADEAERGITIKSTGISLYY 79 (752)
Q Consensus 15 ~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~----------~~g~-----~~~~D~~~~E~eRgiTi~s~~~~~~~ 79 (752)
..+...|++++||||||||||+++|||..|.++++ ..|+ +|+||.+++|||||+||+.+..+|..
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 34567899999999999999999999999999874 2343 57999999999999999999988877
Q ss_pred eeccchhccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhH-------H-------HHHHHhCCC
Q 004467 80 EMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-------C-------MYASKFGVD 145 (752)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv-------~-------~~~~~~~~p 145 (752)
. .|.++++|||||.||..+|+.++++||+|||||||..|- . .+++.+|+.
T Consensus 83 ~----------------k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~ 146 (428)
T COG5256 83 D----------------KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIK 146 (428)
T ss_pred C----------------CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCc
Confidence 5 789999999999999999999999999999999999983 2 778889998
Q ss_pred H-HHHHHHhhCCCCcchhhccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchH
Q 004467 146 E-SKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGK 224 (752)
Q Consensus 146 ~-~~~inkldg~~~~~~~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~ 224 (752)
. ++++||||..+| +. +-|+++ ...+..+++.+|+... +.
T Consensus 147 ~lIVavNKMD~v~w--------de---------------------~rf~ei----~~~v~~l~k~~G~~~~--~v----- 186 (428)
T COG5256 147 QLIVAVNKMDLVSW--------DE---------------------ERFEEI----VSEVSKLLKMVGYNPK--DV----- 186 (428)
T ss_pred eEEEEEEccccccc--------CH---------------------HHHHHH----HHHHHHHHHHcCCCcc--CC-----
Confidence 7 556799994333 21 113333 3456667778776643 22
Q ss_pred HHHHHHHhccccchHHHHHHHHhcCCCchhhhhhhhhcccCCCCccccccccccc--CCCCCeEEEEEEEeecCCCCcee
Q 004467 225 ALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNC--DPNGPLMLYVSKMIPASDKGRFF 302 (752)
Q Consensus 225 ~l~~~~~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~--~~~~pl~~~V~Kv~~~~~~g~~v 302 (752)
.|+|++.-..+++.+... ...||.||+..++++.+..+ ..|.||++.|.+++...+.|. +
T Consensus 187 --------~FIPiSg~~G~Nl~~~s~---------~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI~~v~~i~~~gt-v 248 (428)
T COG5256 187 --------PFIPISGFKGDNLTKKSE---------NMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQDVYSISGIGT-V 248 (428)
T ss_pred --------eEEecccccCCcccccCc---------CCcCccCChHHHHHhccCCCCCCCCCCeEeEeeeEEEecCCce-E
Confidence 579998777777766542 23499999887777765554 357899999999998778887 8
Q ss_pred EEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEE--eccccccccceeecc
Q 004467 303 AFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNATLTN 378 (752)
Q Consensus 303 ~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai--~Gl~~~~~~tgTL~~ 378 (752)
..+||.||.|++||+|++.+++ .. ..|+.+. +++++++.+.|||.+.+ .|++...++.|.++.
T Consensus 249 ~vGrVEsG~i~~g~~v~~~p~~----~~-----~evksie----~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~ 313 (428)
T COG5256 249 PVGRVESGVIKPGQKVTFMPAG----VV-----GEVKSIE----MHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIG 313 (428)
T ss_pred EEEEEeeeeeccCCEEEEecCc----ce-----EEEeeee----ecccccccCCCCCeEEEEecCCchhccCCccEec
Confidence 8899999999999999998754 11 2455444 24788999999999986 576665568885544
No 28
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=1.4e-35 Score=330.57 Aligned_cols=280 Identities=24% Similarity=0.312 Sum_probs=204.5
Q ss_pred ccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCcccc----------CCC-----ccccCCchhHhHhcceeccceEEEEE
Q 004467 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRADEAERGITIKSTGISLYY 79 (752)
Q Consensus 15 ~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~----------~g~-----~~~~D~~~~E~eRgiTi~s~~~~~~~ 79 (752)
..+..+||+++||+|||||||+++||+.+|.+++.. .|+ ++++|+.++||+|||||+++...|.|
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 346789999999999999999999999999887642 111 36899999999999999999888777
Q ss_pred eeccchhccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhH---------H-----HHHHHhCCC
Q 004467 80 EMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV---------C-----MYASKFGVD 145 (752)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv---------~-----~~~~~~~~p 145 (752)
. ++.+||||||||.||..+|.+|++.+|+|||||||.+|. + .++..+|+|
T Consensus 83 ~----------------~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~ 146 (447)
T PLN00043 83 T----------------KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVK 146 (447)
T ss_pred C----------------CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCC
Confidence 5 799999999999999999999999999999999999983 2 566788998
Q ss_pred H-HHHHHHhhCCCCcchhhccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchH
Q 004467 146 E-SKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGK 224 (752)
Q Consensus 146 ~-~~~inkldg~~~~~~~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~ 224 (752)
. ++++||||..+. .|+ +..++...+.+..+++.+|+... ..
T Consensus 147 ~iIV~vNKmD~~~~------~~~-------------------------~~~~~~i~~ei~~~l~~~g~~~~--~~----- 188 (447)
T PLN00043 147 QMICCCNKMDATTP------KYS-------------------------KARYDEIVKEVSSYLKKVGYNPD--KI----- 188 (447)
T ss_pred cEEEEEEcccCCch------hhh-------------------------HHHHHHHHHHHHHHHHHcCCCcc--cc-----
Confidence 6 667899993211 111 11112223457777777665421 11
Q ss_pred HHHHHHHhccccchHHHHHHHHhcCCCchhhhhhhhhcccCCCCccccccccccc--CCCCCeEEEEEEEeecCCCCcee
Q 004467 225 ALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNC--DPNGPLMLYVSKMIPASDKGRFF 302 (752)
Q Consensus 225 ~l~~~~~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~--~~~~pl~~~V~Kv~~~~~~g~~v 302 (752)
.|+|++..--+++.+..+ .-.||.|++..++++.+..+ +.+.||++.|..++..++.|. +
T Consensus 189 --------~~ipiSa~~G~ni~~~~~---------~~~Wy~g~tLl~~l~~i~~p~~~~~~plr~~I~~v~~~~g~G~-v 250 (447)
T PLN00043 189 --------PFVPISGFEGDNMIERST---------NLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGT-V 250 (447)
T ss_pred --------eEEEEecccccccccccc---------CCcccchHHHHHHHhhcCCCccccCCCcEEEEEEEEEeCCcEE-E
Confidence 356665433333332111 12377776554444443322 357899999999999888886 8
Q ss_pred EEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEe--ccccccccce-eeccC
Q 004467 303 AFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQFITKNA-TLTNE 379 (752)
Q Consensus 303 ~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~--Gl~~~~~~tg-TL~~~ 379 (752)
+.|||.+|+|+.||.|.++|.+ . ..+|..|.. ...++++|.|||.+++. +++...++.| .|++.
T Consensus 251 v~G~V~~G~l~~Gd~v~~~P~~----~-----~~~VksI~~----~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~~ 317 (447)
T PLN00043 251 PVGRVETGVIKPGMVVTFGPTG----L-----TTEVKSVEM----HHESLQEALPGDNVGFNVKNVAVKDLKRGYVASNS 317 (447)
T ss_pred EEEEEECCEEeeCCEEEEcCCC----C-----EEEEEEEEE----CCeEeCEecCCCeEEEEECCCCHhhCCCccEEccC
Confidence 8999999999999999987632 1 247777764 35789999999999874 6644445778 66664
No 29
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=1.4e-34 Score=322.89 Aligned_cols=278 Identities=24% Similarity=0.332 Sum_probs=202.7
Q ss_pred ccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCcccc----------CCC-----ccccCCchhHhHhcceeccceEEEEE
Q 004467 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRADEAERGITIKSTGISLYY 79 (752)
Q Consensus 15 ~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~----------~g~-----~~~~D~~~~E~eRgiTi~s~~~~~~~ 79 (752)
..+...||+++||+|||||||+++||+.+|.+++.. .|+ ++++|++++||+||+|++++...+.|
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~ 82 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc
Confidence 346778999999999999999999999999987632 222 24799999999999999999888777
Q ss_pred eeccchhccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhH---------H-----HHHHHhCCC
Q 004467 80 EMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV---------C-----MYASKFGVD 145 (752)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv---------~-----~~~~~~~~p 145 (752)
. ++.+||||||||.||..+++++++.+|+|||||||.+|+ + .++..+|+|
T Consensus 83 ~----------------~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~ 146 (446)
T PTZ00141 83 P----------------KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVK 146 (446)
T ss_pred C----------------CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCC
Confidence 5 799999999999999999999999999999999999997 2 778889999
Q ss_pred H-HHHHHHhh--CCCCcchhhccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhc
Q 004467 146 E-SKMMERLW--GENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLM 222 (752)
Q Consensus 146 ~-~~~inkld--g~~~~~~~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~ 222 (752)
. ++++|||| ..+| +. +-|+. ..+.+..++..+|... ++.
T Consensus 147 ~iiv~vNKmD~~~~~~--------~~---------------------~~~~~----i~~~i~~~l~~~g~~~--~~~--- 188 (446)
T PTZ00141 147 QMIVCINKMDDKTVNY--------SQ---------------------ERYDE----IKKEVSAYLKKVGYNP--EKV--- 188 (446)
T ss_pred eEEEEEEccccccchh--------hH---------------------HHHHH----HHHHHHHHHHhcCCCc--ccc---
Confidence 7 57999999 2222 10 01222 2344666666655432 111
Q ss_pred hHHHHHHHHhccccchHHHHHHHHhcCCCchhhhhhhhhcccCCCCccccccccccc--CCCCCeEEEEEEEeecCCCCc
Q 004467 223 GKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNC--DPNGPLMLYVSKMIPASDKGR 300 (752)
Q Consensus 223 ~~~l~~~~~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~--~~~~pl~~~V~Kv~~~~~~g~ 300 (752)
.++|++..--+.+.+. +. ...||.|+...+.++.+..+ +.+.||.++|..++..++.|.
T Consensus 189 ----------~~ipiSa~~g~ni~~~--~~-------~~~Wy~G~tL~~~l~~~~~~~~~~~~p~r~~I~~v~~v~g~Gt 249 (446)
T PTZ00141 189 ----------PFIPISGWQGDNMIEK--SD-------NMPWYKGPTLLEALDTLEPPKRPVDKPLRLPLQDVYKIGGIGT 249 (446)
T ss_pred ----------eEEEeecccCCCcccC--CC-------CCcccchHHHHHHHhCCCCCCcCCCCCeEEEEEEEEecCCceE
Confidence 3566654222232211 11 12377776544433333221 356899999999999888887
Q ss_pred eeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEe--ccccccccce-eec
Q 004467 301 FFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQFITKNA-TLT 377 (752)
Q Consensus 301 ~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~--Gl~~~~~~tg-TL~ 377 (752)
++.|||.+|+|+.||+|.++|.+ . ..+|..|.. ...++++|.|||.+++. +++...+..| .|+
T Consensus 250 -vv~G~V~~G~l~~Gd~v~i~P~~----~-----~~~VksI~~----~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~ 315 (446)
T PTZ00141 250 -VPVGRVETGILKPGMVVTFAPSG----V-----TTEVKSVEM----HHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVAS 315 (446)
T ss_pred -EEEEEEEcceEecCCEEEEccCC----c-----EEEEEEEEe----cCcccCEECCCCEEEEEECCCCHHHcCCceEEe
Confidence 88999999999999999998643 1 257777764 34679999999999874 5544445678 666
Q ss_pred cC
Q 004467 378 NE 379 (752)
Q Consensus 378 ~~ 379 (752)
+.
T Consensus 316 ~~ 317 (446)
T PTZ00141 316 DS 317 (446)
T ss_pred cC
Confidence 54
No 30
>cd01681 aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Phe-tRNA, EF-1 (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=100.00 E-value=6.7e-34 Score=279.22 Aligned_cols=173 Identities=65% Similarity=1.101 Sum_probs=159.3
Q ss_pred CcEEEEEeecccccceeEEeecCCCceEEEEEEEeCChhhHHHHHcCCCCCCCChHHHHHHhhhhcCCchhccCcEEEec
Q 004467 468 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFG 547 (752)
Q Consensus 468 ~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~ 547 (752)
+|.|+|||||.+.+.+.+..+++++|++++++++||+.++.+.|+++....+...+.+.+.+...++|+..++++||+||
T Consensus 1 ~PiV~frETi~~~~~~~~~~~s~n~~~~i~~~a~PLp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~Iw~fG 80 (177)
T cd01681 1 DPVVSFRETVVETSSGTCLAKSPNKHNRLYMRAEPLPEELIEDIEKGKITLKDDKKKRARILLDKYGWDKLAARKIWAFG 80 (177)
T ss_pred CCCCCEeeecccCCCccEEEEcCCcceEEEEEEecCCHHHHHHHHcCCCCcchhHHHHHHHHHHHcCCCHHHhCcEEEEC
Confidence 69999999999988777888999999999999999999999999998876555555566677789999999999999999
Q ss_pred cCCCCCceEEecccCccc----hHHHHHHHHHHHHHHHHcCCcCCCCeeeeEEEEEeeeecccccccCCCchHHHHHHHH
Q 004467 548 PETTGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVI 623 (752)
Q Consensus 548 P~~~~~n~~~~~~~~~~~----~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~d~~~~~~~~~~~a~~~a~ 623 (752)
|++.|+|+|+|++.+.++ +.+++++|++||++|+++|||||+||+||+|+|.|+.+|.+..+...+++++|+|+||
T Consensus 81 P~~~gpNiLi~~t~~~~~~~~~~~~~~~si~~Gf~~a~~~GpL~~ePv~gv~v~l~~~~~~~~~~~~~~~~~~~a~r~a~ 160 (177)
T cd01681 81 PDRTGPNILVDDTKGVQYDKSLLNEIKDSIVAGFQWATKEGPLCEEPMRGVKFKLEDATLHADAIHRGGGQIIPAARRAC 160 (177)
T ss_pred CCCCCceEEEeCCCCcccccccHHHHHHHHHHHHHHHHhcCCcCCCcccceEEEEEeeeecccccCCchhhHHHHHHHHH
Confidence 999999999999888777 8999999999999999999999999999999999999998766778899999999999
Q ss_pred HHHHHhCCCeEEeeEEE
Q 004467 624 YASQLTAKPRLLEPVYM 640 (752)
Q Consensus 624 ~~a~~~a~~~LlEPi~~ 640 (752)
++||++|+|+||||||.
T Consensus 161 ~~a~~~a~p~LlEPi~~ 177 (177)
T cd01681 161 YAAFLLASPRLMEPMYL 177 (177)
T ss_pred HHHHhhCCCEEEccccC
Confidence 99999999999999994
No 31
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=1.1e-33 Score=314.20 Aligned_cols=283 Identities=22% Similarity=0.366 Sum_probs=205.0
Q ss_pred HhhcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhcccc
Q 004467 11 RIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYK 90 (752)
Q Consensus 11 ~~~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~ 90 (752)
+.+.+.+..+||+++||+|||||||+++|++..|.++.........+|++++||+||+|++++...+.|+
T Consensus 4 ~~~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~---------- 73 (409)
T CHL00071 4 EKFERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE---------- 73 (409)
T ss_pred hhccCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC----------
Confidence 4566778899999999999999999999999998876543333458999999999999999988776664
Q ss_pred CCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCH-HHHHHHhhCCCCcchh
Q 004467 91 GERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDE-SKMMERLWGENFFDPA 162 (752)
Q Consensus 91 ~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~-~~~inkldg~~~~~~~ 162 (752)
+++++|||||||.+|..++.++++.+|+|++||||.+|+. .++.++|+|. ++++||||..+.
T Consensus 74 ------~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~---- 143 (409)
T CHL00071 74 ------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDD---- 143 (409)
T ss_pred ------CeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCH----
Confidence 6899999999999999999999999999999999999875 6777899994 578999992110
Q ss_pred hccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhH-h---hchHHHHHHH------Hh
Q 004467 163 TKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEK-D---LMGKALMKRV------MQ 232 (752)
Q Consensus 163 ~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~-~---~~~~~l~~~~------~~ 232 (752)
+ +.++ ...+.+..++..++.....-.+ . ..+..+.... ..
T Consensus 144 -----------------------~---~~~~----~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~ 193 (409)
T CHL00071 144 -----------------------E---ELLE----LVELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGEN 193 (409)
T ss_pred -----------------------H---HHHH----HHHHHHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCC
Confidence 0 0111 1123455566654432100000 0 0000000000 01
Q ss_pred ccccchHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeee
Q 004467 233 TWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKV 312 (752)
Q Consensus 233 ~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL 312 (752)
.|+.....||+++.+++|+|.. +.+.||+++|++++..++.|. +++|||++|++
T Consensus 194 ~w~~~~~~ll~~l~~~~~~p~~-------------------------~~~~p~r~~I~~v~~~~g~G~-Vv~G~V~sG~l 247 (409)
T CHL00071 194 KWVDKIYNLMDAVDSYIPTPER-------------------------DTDKPFLMAIEDVFSITGRGT-VATGRIERGTV 247 (409)
T ss_pred chhhhHHHHHHHHHhhCCCCCC-------------------------CCCCCEEEEEEEEEEeCCCeE-EEEEEEecCEE
Confidence 3544456788888887776621 356899999999999999887 89999999999
Q ss_pred cCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEe--ccccccccce-eeccCC
Q 004467 313 STGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQFITKNA-TLTNEK 380 (752)
Q Consensus 313 ~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~--Gl~~~~~~tg-TL~~~~ 380 (752)
+.||.|.++|++. +. ..+|..|... ..++++|.|||+|++. |++...++.| +|++.+
T Consensus 248 ~~Gd~v~i~p~~~--~~-----~~~VksI~~~----~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~~ 307 (409)
T CHL00071 248 KVGDTVEIVGLRE--TK-----TTTVTGLEMF----QKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKPG 307 (409)
T ss_pred eeCCEEEEeeCCC--Cc-----EEEEEEEEEc----CcCCCEECCCceeEEEEcCCCHHHcCCeEEEecCC
Confidence 9999999875321 11 2578887753 2478999999999764 7665445778 777654
No 32
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=6.8e-33 Score=309.96 Aligned_cols=288 Identities=23% Similarity=0.367 Sum_probs=206.0
Q ss_pred HHHHHHhhcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccch
Q 004467 6 AEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDA 85 (752)
Q Consensus 6 ~~~~~~~~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~ 85 (752)
...+...++..+..+||+++||+|||||||+++|++..|.+......+..++|++++||+||+|++++...+.|+
T Consensus 68 ~~~~~~~~~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~----- 142 (478)
T PLN03126 68 VRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE----- 142 (478)
T ss_pred HHHHHhhhhccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC-----
Confidence 344555565678899999999999999999999999999876644444568999999999999999998887775
Q ss_pred hccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCH-HHHHHHhhCCC
Q 004467 86 LKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDE-SKMMERLWGEN 157 (752)
Q Consensus 86 ~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~-~~~inkldg~~ 157 (752)
++.++|||||||.+|..++++|++.+|+|++||||.+|+. .++..+|+|. ++++||||..+
T Consensus 143 -----------~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 143 -----------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 211 (478)
T ss_pred -----------CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccC
Confidence 6899999999999999999999999999999999999976 6678899995 56899999211
Q ss_pred CcchhhccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhH-h---hchHHHH------
Q 004467 158 FFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEK-D---LMGKALM------ 227 (752)
Q Consensus 158 ~~~~~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~-~---~~~~~l~------ 227 (752)
- + +.++. ..+.+..+++.+|+....-.+ . .....++
T Consensus 212 ~---------------------------~---~~~~~----i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~ 257 (478)
T PLN03126 212 D---------------------------E---ELLEL----VELEVRELLSSYEFPGDDIPIISGSALLALEALMENPNI 257 (478)
T ss_pred H---------------------------H---HHHHH----HHHHHHHHHHhcCCCcCcceEEEEEcccccccccccccc
Confidence 0 0 11221 123456666665442110000 0 0000000
Q ss_pred HHHHhccccchHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEE
Q 004467 228 KRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRV 307 (752)
Q Consensus 228 ~~~~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV 307 (752)
..-...|+.....||+.+.++.|.|.. +.+.||.++|..+|..++.|. ++.|+|
T Consensus 258 ~~g~~~wy~~i~~Ll~~l~~~~~~p~r-------------------------~~~~p~r~~I~~vf~v~g~Gt-Vv~G~V 311 (478)
T PLN03126 258 KRGDNKWVDKIYELMDAVDSYIPIPQR-------------------------QTDLPFLLAVEDVFSITGRGT-VATGRV 311 (478)
T ss_pred ccCCCchhhhHHHHHHHHHHhCCCCCC-------------------------ccccceeeEEEEEEEeCCceE-EEEEEE
Confidence 000012332234677777666554421 346799999999999888887 899999
Q ss_pred EeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEE--eccccccccce-eeccCC
Q 004467 308 FSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTNEK 380 (752)
Q Consensus 308 ~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai--~Gl~~~~~~tg-TL~~~~ 380 (752)
.+|+|+.||.|++++.+ . ....+|..|... ..++++|.|||.+++ .|++...+..| .|++++
T Consensus 312 ~sG~i~~Gd~v~i~p~~----~---~~~~~VksI~~~----~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~~ 376 (478)
T PLN03126 312 ERGTVKVGETVDIVGLR----E---TRSTTVTGVEMF----QKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPG 376 (478)
T ss_pred EcCeEecCCEEEEecCC----C---ceEEEEEEEEEC----CeECCEEeCCceeeeeccCCcHHHcCCccEEecCC
Confidence 99999999999997532 1 112577777643 467999999999987 57666555777 677654
No 33
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=5.4e-33 Score=307.02 Aligned_cols=279 Identities=24% Similarity=0.343 Sum_probs=198.9
Q ss_pred cccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCC
Q 004467 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGER 93 (752)
Q Consensus 14 ~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~ 93 (752)
...+..+||+++||+|||||||+++|+...+...+......+.+|.+++||+||+|++++...+.+.
T Consensus 7 ~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~------------- 73 (394)
T PRK12736 7 DRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETE------------- 73 (394)
T ss_pred ccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCC-------------
Confidence 3457789999999999999999999986543211100111236999999999999999987665543
Q ss_pred CCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCH-HHHHHHhhCCCCcchhhcc
Q 004467 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDE-SKMMERLWGENFFDPATKK 165 (752)
Q Consensus 94 ~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~-~~~inkldg~~~~~~~~~~ 165 (752)
++.++|||||||.+|..+++++++.+|+|++|||+.+|++ .++..+|+|. ++++||||..+.
T Consensus 74 ---~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~------- 143 (394)
T PRK12736 74 ---KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDD------- 143 (394)
T ss_pred ---CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcch-------
Confidence 6799999999999999999999999999999999999865 6677899995 577999992110
Q ss_pred ccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHH-HHHhccccchHHHHHH
Q 004467 166 WTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMK-RVMQTWLPASSALLEM 244 (752)
Q Consensus 166 ~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~-~~~~~~~P~~~~LLd~ 244 (752)
+ ++++ ...+.+..+++..+.......+- ...++-. .....|.+....|++.
T Consensus 144 --------------------~---~~~~----~i~~~i~~~l~~~~~~~~~~~ii-~vSa~~g~~~~~~~~~~i~~Ll~~ 195 (394)
T PRK12736 144 --------------------E---ELLE----LVEMEVRELLSEYDFPGDDIPVI-RGSALKALEGDPKWEDAIMELMDA 195 (394)
T ss_pred --------------------H---HHHH----HHHHHHHHHHHHhCCCcCCccEE-EeeccccccCCCcchhhHHHHHHH
Confidence 0 0111 11234555666544321100000 0000000 0012455667899999
Q ss_pred HHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCC
Q 004467 245 MIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPN 324 (752)
Q Consensus 245 i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n 324 (752)
+.+++|.|.. +.++||+++|++++..++.|. +++|||++|+|+.||.|+++|++
T Consensus 196 l~~~lp~~~~-------------------------~~~~p~r~~I~~~~~~~g~G~-Vv~G~v~~G~l~~gd~v~i~p~~ 249 (394)
T PRK12736 196 VDEYIPTPER-------------------------DTDKPFLMPVEDVFTITGRGT-VVTGRVERGTVKVGDEVEIVGIK 249 (394)
T ss_pred HHHhCCCCCC-------------------------CCCCCeEEEEEEEEecCCcEE-EEEEEEeecEEecCCEEEEecCC
Confidence 9999987731 346899999999999999887 89999999999999999988642
Q ss_pred CCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEE--eccccccccce-eeccCC
Q 004467 325 YVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTNEK 380 (752)
Q Consensus 325 ~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai--~Gl~~~~~~tg-TL~~~~ 380 (752)
. . ...+|..|.. ...++++|.|||++++ .|++...++.| +||+++
T Consensus 250 ~--~-----~~~~V~sI~~----~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~~~ 297 (394)
T PRK12736 250 E--T-----QKTVVTGVEM----FRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPG 297 (394)
T ss_pred C--C-----eEEEEEEEEE----CCEEccEECCCCEEEEEECCCcHHhCCcceEEecCC
Confidence 1 1 1257887765 2467999999999976 67765445778 777754
No 34
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.98 E-value=5.5e-32 Score=299.46 Aligned_cols=280 Identities=21% Similarity=0.340 Sum_probs=194.0
Q ss_pred hcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCC
Q 004467 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGE 92 (752)
Q Consensus 13 ~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~ 92 (752)
.++.++.+||+++||+|||||||+++|++......+......+.+|.+++||+||+|++++...+.+.
T Consensus 6 ~~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~------------ 73 (394)
T TIGR00485 6 FERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETE------------ 73 (394)
T ss_pred hcCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCC------------
Confidence 44567789999999999999999999986533111100111247999999999999999877665543
Q ss_pred CCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHH-HHHHHhhCCCCcchhhc
Q 004467 93 RNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDES-KMMERLWGENFFDPATK 164 (752)
Q Consensus 93 ~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~-~~inkldg~~~~~~~~~ 164 (752)
++.++|+|||||.+|..++.++++.+|+|++||||.+|+. .++..+++|.+ +++||||-.+.
T Consensus 74 ----~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~------ 143 (394)
T TIGR00485 74 ----NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD------ 143 (394)
T ss_pred ----CEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCH------
Confidence 6889999999999999999999999999999999999865 66778899986 57899992110
Q ss_pred cccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHH-HHHhccccchHHHHH
Q 004467 165 KWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMK-RVMQTWLPASSALLE 243 (752)
Q Consensus 165 ~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~-~~~~~~~P~~~~LLd 243 (752)
.+.++ ...+.+..+++..+.....-.+. ...++-. .....|......||+
T Consensus 144 ------------------------~~~~~----~~~~~i~~~l~~~~~~~~~~~ii-~vSa~~g~~g~~~~~~~~~~ll~ 194 (394)
T TIGR00485 144 ------------------------EELLE----LVEMEVRELLSEYDFPGDDTPII-RGSALKALEGDAEWEAKILELMD 194 (394)
T ss_pred ------------------------HHHHH----HHHHHHHHHHHhcCCCccCccEE-ECccccccccCCchhHhHHHHHH
Confidence 00111 11233555565543221000000 0000000 000123323357888
Q ss_pred HHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccC
Q 004467 244 MMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGP 323 (752)
Q Consensus 244 ~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~ 323 (752)
++.+.+|.|.. +.+.||+++|++++..++.|. +++|||.+|+|+.||.|+++++
T Consensus 195 ~l~~~~~~~~~-------------------------~~~~p~r~~V~~vf~~~g~G~-Vv~G~v~~G~l~~gd~v~i~p~ 248 (394)
T TIGR00485 195 AVDEYIPTPER-------------------------ETDKPFLMPIEDVFSITGRGT-VVTGRVERGIVKVGEEVEIVGL 248 (394)
T ss_pred HHHhcCCCCCC-------------------------CCCCCeEEEEEEEEeeCCceE-EEEEEEEeeEEeCCCEEEEecC
Confidence 88877776631 346899999999999999887 8999999999999999998763
Q ss_pred CCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEE--eccccccccce-eeccCC
Q 004467 324 NYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTNEK 380 (752)
Q Consensus 324 n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai--~Gl~~~~~~tg-TL~~~~ 380 (752)
. .+. ..+|..|... ..++++|.|||++++ .|++...++.| +|++..
T Consensus 249 ~--~~~-----~~~VksI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~~~ 297 (394)
T TIGR00485 249 K--DTR-----KTTVTGVEMF----RKELDEGRAGDNVGLLLRGIKREEIERGMVLAKPG 297 (394)
T ss_pred C--CCc-----EEEEEEEEEC----CeEEEEECCCCEEEEEeCCccHHHCCccEEEecCC
Confidence 2 111 2577777752 467899999999976 67755445677 777654
No 35
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=3.2e-32 Score=294.87 Aligned_cols=279 Identities=24% Similarity=0.352 Sum_probs=212.5
Q ss_pred ccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCcccc----------CCC-----ccccCCchhHhHhcceeccceEEEEE
Q 004467 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRADEAERGITIKSTGISLYY 79 (752)
Q Consensus 15 ~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~----------~g~-----~~~~D~~~~E~eRgiTi~s~~~~~~~ 79 (752)
.++...|..++||||+|||||.++|||..|.|+.+. .|+ +|++|..++|||||+|++.+...|.-
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 345678999999999999999999999999997752 343 57999999999999999999888775
Q ss_pred eeccchhccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH--------------HHHHHhCCC
Q 004467 80 EMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--------------MYASKFGVD 145 (752)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~--------------~~~~~~~~p 145 (752)
. .+.++|||+|||.||+.+|+.++..+|.|||||||..|.. .+++.+|+.
T Consensus 253 ~----------------~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~ 316 (603)
T KOG0458|consen 253 K----------------SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGIS 316 (603)
T ss_pred C----------------ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcc
Confidence 4 7899999999999999999999999999999999999876 777889988
Q ss_pred H-HHHHHHhhCCCCcchhhccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHH-HHcCCCCChhhHhhch
Q 004467 146 E-SKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPML-QKLGVTMKSEEKDLMG 223 (752)
Q Consensus 146 ~-~~~inkldg~~~~~~~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l-~~l~~~l~~~~~~~~~ 223 (752)
. ++.+||||...| ++ ..+++....+..|| +..|+.- .++
T Consensus 317 qlivaiNKmD~V~W--------sq-------------------------~RF~eIk~~l~~fL~~~~gf~e--s~v---- 357 (603)
T KOG0458|consen 317 QLIVAINKMDLVSW--------SQ-------------------------DRFEEIKNKLSSFLKESCGFKE--SSV---- 357 (603)
T ss_pred eEEEEeecccccCc--------cH-------------------------HHHHHHHHHHHHHHHHhcCccc--CCc----
Confidence 6 666899993333 22 12233456677888 5645442 222
Q ss_pred HHHHHHHHhccccchHHHHHHHHhcCCCchhhhhhhhhcccCCCCccccccccccc--CCCCCeEEEEEEEeecCCCCce
Q 004467 224 KALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNC--DPNGPLMLYVSKMIPASDKGRF 301 (752)
Q Consensus 224 ~~l~~~~~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~--~~~~pl~~~V~Kv~~~~~~g~~ 301 (752)
+|+|++.-..++++..- +...+..||.||+..+..+.++.+ +.+.||++-|+.+++.+..+ +
T Consensus 358 ---------~FIPiSGl~GeNL~k~~------~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kPl~ltIsdi~~~~~~~-~ 421 (603)
T KOG0458|consen 358 ---------KFIPISGLSGENLIKIE------QENELSQWYKGPTLLSQIDSFKIPERPIDKPLRLTISDIYPLPSSG-V 421 (603)
T ss_pred ---------ceEecccccCCcccccc------cchhhhhhhcCChHHHHHhhccCCCCcccCCeEEEhhheeecCCCe-e
Confidence 68999765555554332 122466799998765544444333 34679999999999988877 5
Q ss_pred eEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEE--eccccccccce-eec
Q 004467 302 FAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLT 377 (752)
Q Consensus 302 v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai--~Gl~~~~~~tg-TL~ 377 (752)
.++|||.||.+++||+|+++++. . + ..|..|- ....+...|.|||-|.+ .|+....+..| +++
T Consensus 422 ~i~gkiesG~iq~gqkl~i~~s~-----e-~---~~vk~l~----~~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i~~ 487 (603)
T KOG0458|consen 422 SISGKIESGYIQPGQKLYIMTSR-----E-D---ATVKGLT----SNDEPKTWAVAGDNVSLKLPGILPNLVQVGDIAD 487 (603)
T ss_pred EEEEEEeccccccCCEEEEecCc-----c-e---EEEEeee----cCCCcceeEeeCCEEEEecCccChhhcccceeee
Confidence 89999999999999999998643 1 1 3444433 23577889999999876 46666556777 444
No 36
>PRK12735 elongation factor Tu; Reviewed
Probab=99.98 E-value=1.5e-31 Score=295.82 Aligned_cols=283 Identities=20% Similarity=0.295 Sum_probs=198.8
Q ss_pred HhhcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhcccc
Q 004467 11 RIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYK 90 (752)
Q Consensus 11 ~~~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~ 90 (752)
+..+..+..+||+++||+|||||||+++|++..+...+......+.+|.+++||+||+|++++...+.+.
T Consensus 4 ~~~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~---------- 73 (396)
T PRK12735 4 EKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA---------- 73 (396)
T ss_pred hhcCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC----------
Confidence 3455667889999999999999999999998554221111111247999999999999999887665553
Q ss_pred CCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHH-HHHHHhhCCCCcchh
Q 004467 91 GERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDES-KMMERLWGENFFDPA 162 (752)
Q Consensus 91 ~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~-~~inkldg~~~~~~~ 162 (752)
+.+++|||||||.+|..++.+++..+|+|++||||.+|+. .++..+++|.+ +++||||-.+.
T Consensus 74 ------~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~---- 143 (396)
T PRK12735 74 ------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD---- 143 (396)
T ss_pred ------CcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcch----
Confidence 6789999999999999999999999999999999999865 55677899976 46899992110
Q ss_pred hccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhH-hhchHHHH-HHHHhccccchHH
Q 004467 163 TKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEK-DLMGKALM-KRVMQTWLPASSA 240 (752)
Q Consensus 163 ~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~-~~~~~~l~-~~~~~~~~P~~~~ 240 (752)
+ +.++. ..+.+..+++.++.......+ ..+...-. ......|.+....
T Consensus 144 -----------------------~---~~~~~----~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~ 193 (396)
T PRK12735 144 -----------------------E---ELLEL----VEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILE 193 (396)
T ss_pred -----------------------H---HHHHH----HHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHH
Confidence 0 01111 122345555554321100000 00000000 0000245555678
Q ss_pred HHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEE
Q 004467 241 LLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRI 320 (752)
Q Consensus 241 LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i 320 (752)
|++++.+.+|.|.. +.++||+++|..+|..++.|. ++.|||.+|+|+.||.|++
T Consensus 194 Ll~~l~~~~~~p~~-------------------------~~~~p~r~~I~~~f~v~g~Gt-vv~G~v~~G~i~~gd~v~i 247 (396)
T PRK12735 194 LMDAVDSYIPEPER-------------------------AIDKPFLMPIEDVFSISGRGT-VVTGRVERGIVKVGDEVEI 247 (396)
T ss_pred HHHHHHhcCCCCCc-------------------------cCCCCeEEEEEEEEecCCceE-EEEEEEEecEEeCCCEEEE
Confidence 99999988887631 346899999999999888886 8999999999999999999
Q ss_pred ccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEE--eccccccccce-eeccCC
Q 004467 321 MGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTNEK 380 (752)
Q Consensus 321 ~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai--~Gl~~~~~~tg-TL~~~~ 380 (752)
+|.+ .. ...+|..|.. ...++++|.|||.+++ .|++...++.| .||+.+
T Consensus 248 ~p~~---~~----~~~~VksI~~----~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~~ 299 (396)
T PRK12735 248 VGIK---ET----QKTTVTGVEM----FRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPG 299 (396)
T ss_pred ecCC---CC----eEEEEEEEEE----CCeEeCEECCCCEEEEEeCCCcHHHCCcceEEEcCC
Confidence 8642 11 1246777664 3468999999999988 57765555778 777754
No 37
>PRK00049 elongation factor Tu; Reviewed
Probab=99.97 E-value=2.1e-31 Score=294.35 Aligned_cols=282 Identities=21% Similarity=0.315 Sum_probs=196.9
Q ss_pred hhcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccC
Q 004467 12 IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG 91 (752)
Q Consensus 12 ~~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~ 91 (752)
...+.+..+||+++||+|||||||+++|++......+......+.+|++++|++||+|++++...+.+.
T Consensus 5 ~~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~----------- 73 (396)
T PRK00049 5 KFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE----------- 73 (396)
T ss_pred hccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC-----------
Confidence 344567889999999999999999999997542111100111237999999999999999987665553
Q ss_pred CCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHH-HHHHHhhCCCCcchhh
Q 004467 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDES-KMMERLWGENFFDPAT 163 (752)
Q Consensus 92 ~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~-~~inkldg~~~~~~~~ 163 (752)
+++++|||||||.+|..++.+++..+|+|++||||.+|++ .++..+++|.+ +++||+|..+-
T Consensus 74 -----~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~----- 143 (396)
T PRK00049 74 -----KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD----- 143 (396)
T ss_pred -----CeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcch-----
Confidence 6899999999999999999999999999999999999866 66788999986 57999992110
Q ss_pred ccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhH-hhchHH-HHHHHHhccccchHHH
Q 004467 164 KKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEK-DLMGKA-LMKRVMQTWLPASSAL 241 (752)
Q Consensus 164 ~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~-~~~~~~-l~~~~~~~~~P~~~~L 241 (752)
+ +.++. ....+..++..++.......+ ..+... .-......|......|
T Consensus 144 ----------------------~---~~~~~----~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~l 194 (396)
T PRK00049 144 ----------------------E---ELLEL----VEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILEL 194 (396)
T ss_pred ----------------------H---HHHHH----HHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHH
Confidence 0 01111 122355566554432110000 000000 0000001344445688
Q ss_pred HHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEc
Q 004467 242 LEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIM 321 (752)
Q Consensus 242 Ld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~ 321 (752)
|+++.+.+|.|.. +.+.||.++|..+|..++.|. ++.|||.+|++++||+|.++
T Consensus 195 l~~l~~~~~~p~~-------------------------~~~~p~r~~I~~~f~v~g~G~-Vv~G~v~~G~i~~gd~v~i~ 248 (396)
T PRK00049 195 MDAVDSYIPTPER-------------------------AIDKPFLMPIEDVFSISGRGT-VVTGRVERGIIKVGEEVEIV 248 (396)
T ss_pred HHHHHhcCCCCCC-------------------------CCCCCeEEEEEEEEeeCCceE-EEEEEEeeeEEecCCEEEEe
Confidence 8888888877621 346899999999999888886 89999999999999999988
Q ss_pred cCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEE--eccccccccce-eeccCC
Q 004467 322 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTNEK 380 (752)
Q Consensus 322 ~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai--~Gl~~~~~~tg-TL~~~~ 380 (752)
|.. ... ..+|..|... ..++++|.|||.+++ .|++...+..| .||+++
T Consensus 249 p~~--~~~-----~~~VksI~~~----~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~~ 299 (396)
T PRK00049 249 GIR--DTQ-----KTTVTGVEMF----RKLLDEGQAGDNVGALLRGIKREDVERGQVLAKPG 299 (396)
T ss_pred ecC--CCc-----eEEEEEEEEC----CcEeCEEcCCCEEEEEeCCCCHHHCCcceEEecCC
Confidence 642 111 2567777643 467999999999987 57655445677 777654
No 38
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.8e-32 Score=279.60 Aligned_cols=327 Identities=19% Similarity=0.244 Sum_probs=244.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCcccc-------------CCC----ccccCCchhHhHhcceeccceEEEEE
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV-------------AGD----VRMTDTRADEAERGITIKSTGISLYY 79 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~-------------~g~----~~~~D~~~~E~eRgiTi~s~~~~~~~ 79 (752)
+...++..+|+||.|||||+++|||.+..+-..+ .|+ +-.+|-++.|||.||||+.+...|..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 4567899999999999999999999998763321 111 34789999999999999999877766
Q ss_pred eeccchhccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHH-HH
Q 004467 80 EMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKM-ME 151 (752)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~-in 151 (752)
. .++|.+.|||||+.|..+|.+|++-||.||++|||..|+. ..+.-+||..+++ +|
T Consensus 84 ~----------------KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVN 147 (431)
T COG2895 84 E----------------KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVN 147 (431)
T ss_pred c----------------cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEe
Confidence 4 7899999999999999999999999999999999999998 4555689987554 79
Q ss_pred HhhCCCCcchhhccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHH
Q 004467 152 RLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM 231 (752)
Q Consensus 152 kldg~~~~~~~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~ 231 (752)
|||-.+|. ++.++........|.++||+..
T Consensus 148 KmDLvdy~---------------------------------e~~F~~I~~dy~~fa~~L~~~~----------------- 177 (431)
T COG2895 148 KMDLVDYS---------------------------------EEVFEAIVADYLAFAAQLGLKD----------------- 177 (431)
T ss_pred eecccccC---------------------------------HHHHHHHHHHHHHHHHHcCCCc-----------------
Confidence 99966661 1222233445667788877664
Q ss_pred hccccchHHHHHHHHhcCCCchhhhhhhhhcccCCCCccccccccccc--CCCCCeEEEEEEEeecCCCCceeEEEEEEe
Q 004467 232 QTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNC--DPNGPLMLYVSKMIPASDKGRFFAFGRVFS 309 (752)
Q Consensus 232 ~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~--~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~S 309 (752)
..++|++....|+++.... .-.||.||+..+.++.+..- ....||++.|..+...+ ..-+---|+|-|
T Consensus 178 ~~~IPiSAl~GDNV~~~s~---------~mpWY~GptLLe~LE~v~i~~~~~~~~~RfPVQ~V~Rp~-~dfRGyaGtias 247 (431)
T COG2895 178 VRFIPISALLGDNVVSKSE---------NMPWYKGPTLLEILETVEIADDRSAKAFRFPVQYVNRPN-LDFRGYAGTIAS 247 (431)
T ss_pred ceEEechhccCCccccccc---------CCCcccCccHHHHHhhccccccccccceeeceEEecCCC-Ccccccceeeec
Confidence 2569998877777765422 11299999876655544332 34578999999887533 221145689999
Q ss_pred eeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeccCCCCCccccc
Q 004467 310 GKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIR 388 (752)
Q Consensus 310 GtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~Gl~~~~~~tg-TL~~~~~~~~~~~~ 388 (752)
|++++||+|.++|++ .. .+|.+|..+.|. +++|.||+-+.++--+++.+..| .++... . .+..
T Consensus 248 G~v~~Gd~vvvlPsG----~~-----s~V~~Ivt~dg~----~~~A~aG~aVtl~L~deidisRGd~i~~~~--~-~~~~ 311 (431)
T COG2895 248 GSVKVGDEVVVLPSG----KT-----SRVKRIVTFDGE----LAQASAGEAVTLVLADEIDISRGDLIVAAD--A-PPAV 311 (431)
T ss_pred cceecCCeEEEccCC----Ce-----eeEEEEeccCCc----hhhccCCceEEEEEcceeecccCcEEEccC--C-Ccch
Confidence 999999999998754 22 589998888665 78999999999986666666777 777665 2 3333
Q ss_pred cccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEc-CCCc
Q 004467 389 AMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGE 436 (752)
Q Consensus 389 ~~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~-etge 436 (752)
.-.|. .-++|+.-+|..++....|.-+-++...+-..++...| .|.+
T Consensus 312 ~~~f~-A~vvWm~~~pl~pGr~Y~lK~~t~~v~a~V~~i~~~ldvntl~ 359 (431)
T COG2895 312 ADAFD-ADVVWMDEEPLLPGRSYDLKIATRTVRARVEEIKHQLDVNTLE 359 (431)
T ss_pred hhhcc-eeEEEecCCCCCCCceEEEEecceEEEEEeeeeEEEEeccccc
Confidence 44455 78999999999999988888777776666666666555 4444
No 39
>PLN03127 Elongation factor Tu; Provisional
Probab=99.97 E-value=6e-31 Score=293.07 Aligned_cols=273 Identities=22% Similarity=0.354 Sum_probs=191.7
Q ss_pred ccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC-----ccccCCchhHhHhcceeccceEEEEEeeccchhccc
Q 004467 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-----VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSY 89 (752)
Q Consensus 15 ~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~-----~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~ 89 (752)
..+..+||+++||+|||||||+++|+... .+ .|+ ...+|..++||+||+|++++...+.+.
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~---~~--~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--------- 122 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVL---AE--EGKAKAVAFDEIDKAPEEKARGITIATAHVEYETA--------- 122 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHH---HH--hhcccceeeccccCChhHhhcCceeeeeEEEEcCC---------
Confidence 45678999999999999999999996432 11 222 126999999999999999988776664
Q ss_pred cCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCH-HHHHHHhhCCCCcch
Q 004467 90 KGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDE-SKMMERLWGENFFDP 161 (752)
Q Consensus 90 ~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~-~~~inkldg~~~~~~ 161 (752)
+++++|||||||.+|..++++++..+|+|++||||.+|+. .++..+|+|. ++++||+|..+.
T Consensus 123 -------~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~--- 192 (447)
T PLN03127 123 -------KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDD--- 192 (447)
T ss_pred -------CeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCH---
Confidence 6899999999999999999999999999999999999865 6778899996 578999992110
Q ss_pred hhccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhh-chHHHHHHH--Hhcc--cc
Q 004467 162 ATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDL-MGKALMKRV--MQTW--LP 236 (752)
Q Consensus 162 ~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~-~~~~l~~~~--~~~~--~P 236 (752)
+ ++++. ..+.+.+++..++... +.+.. ...++ .+. .... ..
T Consensus 193 ------------------------~---~~~~~----i~~~i~~~l~~~~~~~--~~vpiip~Sa~-sa~~g~n~~~~~~ 238 (447)
T PLN03127 193 ------------------------E---ELLEL----VEMELRELLSFYKFPG--DEIPIIRGSAL-SALQGTNDEIGKN 238 (447)
T ss_pred ------------------------H---HHHHH----HHHHHHHHHHHhCCCC--CcceEEEeccc-eeecCCCcccccc
Confidence 0 01111 1122334444433211 00000 00000 000 0000 01
Q ss_pred chHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCC
Q 004467 237 ASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGL 316 (752)
Q Consensus 237 ~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd 316 (752)
....|++.+.+++|.|.. +.++||+++|..+|..++.|. ++.|||.+|+++.||
T Consensus 239 ~i~~Ll~~l~~~lp~p~r-------------------------~~~~pfr~~I~~vf~v~g~Gt-VvtG~v~~G~i~~Gd 292 (447)
T PLN03127 239 AILKLMDAVDEYIPEPVR-------------------------VLDKPFLMPIEDVFSIQGRGT-VATGRVEQGTIKVGE 292 (447)
T ss_pred hHHHHHHHHHHhCCCCCc-------------------------ccccceEeeEEEEEEcCCceE-EEEEEEEccEEecCC
Confidence 246788999888887731 246799999999999888886 899999999999999
Q ss_pred EEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEE--eccccccccce-eeccCC
Q 004467 317 KVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTNEK 380 (752)
Q Consensus 317 ~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai--~Gl~~~~~~tg-TL~~~~ 380 (752)
.|+++|++. +. ....+|..|... ..++++|.|||.+++ .|++...+..| .||+..
T Consensus 293 ~v~i~p~~~--~g---~~~~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~~ 350 (447)
T PLN03127 293 EVEIVGLRP--GG---PLKTTVTGVEMF----KKILDQGQAGDNVGLLLRGLKREDVQRGQVICKPG 350 (447)
T ss_pred EEEEcccCC--CC---cEEEEEEEEEEE----CcEeCEEcCCCEEEEEeCCCCHHHCCCccEEecCC
Confidence 999986531 11 123577777654 356999999999987 57765556778 777653
No 40
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.97 E-value=9.1e-32 Score=298.17 Aligned_cols=271 Identities=21% Similarity=0.273 Sum_probs=184.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCcccc----------CCC-------ccccCCchhHhHhcceeccceEEEEEeecc
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-------VRMTDTRADEAERGITIKSTGISLYYEMTD 83 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~----------~g~-------~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~ 83 (752)
||+|+||+|||||||+++||+.+|.++++. .|+ .++||++++||+||+|++++...+.|+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~--- 78 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD--- 78 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC---
Confidence 799999999999999999999999998743 343 358999999999999999999888885
Q ss_pred chhccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCH-HHHHHHhhC
Q 004467 84 DALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDE-SKMMERLWG 155 (752)
Q Consensus 84 ~~~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~-~~~inkldg 155 (752)
+++++|||||||.+|..++..+++.+|+||+||||.+|+. .++..++++. ++++||||.
T Consensus 79 -------------~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~ 145 (406)
T TIGR02034 79 -------------KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDL 145 (406)
T ss_pred -------------CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccc
Confidence 7899999999999999999999999999999999999976 5666778875 568899993
Q ss_pred CCCcchhhccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHHhccc
Q 004467 156 ENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWL 235 (752)
Q Consensus 156 ~~~~~~~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~~~ 235 (752)
.++. .+.++ ...+.+.++++.++..- ..++
T Consensus 146 ~~~~-----------------------------~~~~~----~i~~~~~~~~~~~~~~~-----------------~~ii 175 (406)
T TIGR02034 146 VDYD-----------------------------EEVFE----NIKKDYLAFAEQLGFRD-----------------VTFI 175 (406)
T ss_pred ccch-----------------------------HHHHH----HHHHHHHHHHHHcCCCC-----------------ccEE
Confidence 2210 00111 11233444555533210 0134
Q ss_pred cchHHHHHHHHhcCCCchhhhhhhhhcccCCCCccccccccccc--CCCCCeEEEEEEEeecCCCCceeEEEEEEeeeec
Q 004467 236 PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNC--DPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVS 313 (752)
Q Consensus 236 P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~--~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~ 313 (752)
|++..--+.+.+ ++. ...||.|++..++++.+..+ +.+.||.+.|..++.....+. -..|+|.+|+|+
T Consensus 176 piSA~~g~ni~~--~~~-------~~~wy~g~tL~~~L~~~~~~~~~~~~p~r~~i~~v~~~~~~~~-g~~G~v~~G~l~ 245 (406)
T TIGR02034 176 PLSALKGDNVVS--RSE-------SMPWYSGPTLLEILETVEVERDAQDLPLRFPVQYVNRPNLDFR-GYAGTIASGSVH 245 (406)
T ss_pred EeecccCCCCcc--ccc-------CCCccchhHHHHHHHhcCCCCCcCCCCcccceEEEeecCCCcE-EEEEEEecceee
Confidence 442211111111 010 11255554433333322211 346789988887764322222 256999999999
Q ss_pred CCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeccCC
Q 004467 314 TGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEK 380 (752)
Q Consensus 314 ~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~Gl~~~~~~tg-TL~~~~ 380 (752)
.||+|.++|.+ . ..+|..|... ..++++|.|||.+++..-+...+..| .||+++
T Consensus 246 ~gd~v~i~P~~----~-----~~~VksI~~~----~~~~~~a~~G~~v~l~l~~~~~i~rG~vl~~~~ 300 (406)
T TIGR02034 246 VGDEVVVLPSG----R-----SSRVARIVTF----DGDLEQARAGQAVTLTLDDEIDISRGDLLAAAD 300 (406)
T ss_pred cCCEEEEeCCC----c-----EEEEEEEEEC----CcccCEeCCCCEEEEEECCccccCCccEEEcCC
Confidence 99999998643 1 2578877643 34699999999999864332223567 777665
No 41
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.97 E-value=7.2e-32 Score=282.08 Aligned_cols=209 Identities=32% Similarity=0.521 Sum_probs=169.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCC----ccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~----~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
||+|+||+|||||||+++|++.+|.+++ .|+ ++++|+.++||+||+|++++..++.|+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~--~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~---------------- 62 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHK--IGEVHGGGATMDFMEQERERGITIQSAATTCFWK---------------- 62 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcc--cccccCCccccCCCccccCCCcCeeccEEEEEEC----------------
Confidence 8999999999999999999999998876 443 579999999999999999999999996
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh--CCCCcchhh---c
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW--GENFFDPAT---K 164 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld--g~~~~~~~~---~ 164 (752)
++++||||||||.||..++.++++.+|+||+||||.+|++ .++.+.++|+++|+||+| ++++..... .
T Consensus 63 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~ 142 (270)
T cd01886 63 DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIRE 142 (270)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHH
Confidence 7999999999999999999999999999999999999876 667788999999999999 455544333 2
Q ss_pred cccccC------CCCccccCcceeeEe----------------chHH------------HHHHHhhccchhhHHHHHHHc
Q 004467 165 KWTTKN------TGSATCKRGFVQFCY----------------EPIK------------QIINTCMNDQKDKLWPMLQKL 210 (752)
Q Consensus 165 ~~~~~~------~g~~~~~~~fv~~~l----------------~~i~------------~l~~~~~~~~~~~l~~~l~~l 210 (752)
.+...+ +++...++++++++. .+++ ++++.+++.|++++++|++.
T Consensus 143 ~l~~~~~~~~~Pisa~~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~- 221 (270)
T cd01886 143 KLGANPVPLQLPIGEEDDFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEKYLEG- 221 (270)
T ss_pred HhCCCceEEEeccccCCCceEEEEccccEEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCC-
Confidence 222221 344334556665432 1221 46788889999999999988
Q ss_pred CCCCChhhHhhchHHHHHHHH-hccccc----------hHHHHHHHHhcCCCc
Q 004467 211 GVTMKSEEKDLMGKALMKRVM-QTWLPA----------SSALLEMMIFHLPSP 252 (752)
Q Consensus 211 ~~~l~~~~~~~~~~~l~~~~~-~~~~P~----------~~~LLd~i~~~lPsP 252 (752)
..++.+++. ..+.+++. +.++|+ ++.|||.+++++|+|
T Consensus 222 -~~~~~~el~---~~l~~~~~~~~~~PV~~gSa~~~~Gi~~lld~i~~~~p~p 270 (270)
T cd01886 222 -EEITEEEIK---AAIRKGTIANKIVPVLCGSAFKNKGVQPLLDAVVDYLPSP 270 (270)
T ss_pred -CCCCHHHHH---HHHHHHHHcCcEEEEEeCcCCCCcCHHHHHHHHHHhcCCC
Confidence 678888773 45555555 578897 789999999999998
No 42
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.97 E-value=1.8e-31 Score=298.90 Aligned_cols=278 Identities=24% Similarity=0.382 Sum_probs=193.9
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCcccc----------CCC-----ccccCCchhHhHhcceeccceEEEEEe
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRADEAERGITIKSTGISLYYE 80 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~----------~g~-----~~~~D~~~~E~eRgiTi~s~~~~~~~~ 80 (752)
.+...||+++||+|||||||+++|++..|.+++.. .|+ .+++|++++||+||+|++++...+.|+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 35678999999999999999999999999987641 243 368999999999999999999888885
Q ss_pred eccchhccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecch--hHH-------HHHHHhCCC-HHHHH
Q 004467 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE--GVC-------MYASKFGVD-ESKMM 150 (752)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~--Gv~-------~~~~~~~~p-~~~~i 150 (752)
++.++|+|||||.+|..++.++++.+|++|+|||+.+ |+. .++..++++ .++++
T Consensus 83 ----------------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivvi 146 (425)
T PRK12317 83 ----------------KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAI 146 (425)
T ss_pred ----------------CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEE
Confidence 7899999999999999999999999999999999998 764 566678875 67788
Q ss_pred HHhhCCCCcchhhccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHH
Q 004467 151 ERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRV 230 (752)
Q Consensus 151 nkldg~~~~~~~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~ 230 (752)
||+|..++.. +.++ ...+.+.++++.+++.... .
T Consensus 147 NK~Dl~~~~~-----------------------------~~~~----~~~~~i~~~l~~~g~~~~~--~----------- 180 (425)
T PRK12317 147 NKMDAVNYDE-----------------------------KRYE----EVKEEVSKLLKMVGYKPDD--I----------- 180 (425)
T ss_pred EccccccccH-----------------------------HHHH----HHHHHHHHHHHhhCCCcCc--c-----------
Confidence 9999322100 0011 1123344555554432110 0
Q ss_pred HhccccchHHHHHHHHhcCCCchhhhhhhhhcccCCCCccccccccccc--CCCCCeEEEEEEEeecCCCCceeEEEEEE
Q 004467 231 MQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNC--DPNGPLMLYVSKMIPASDKGRFFAFGRVF 308 (752)
Q Consensus 231 ~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~--~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~ 308 (752)
.++|++..--+.+.+. +. ...||.|++..++++.+..+ +.+.||.++|..++..++.|. ++.|||.
T Consensus 181 --~ii~iSA~~g~gi~~~--~~-------~~~wy~g~~L~~~l~~~~~~~~~~~~p~r~~i~~~~~~~g~G~-vv~G~v~ 248 (425)
T PRK12317 181 --PFIPVSAFEGDNVVKK--SE-------NMPWYNGPTLLEALDNLKPPEKPTDKPLRIPIQDVYSISGVGT-VPVGRVE 248 (425)
T ss_pred --eEEEeecccCCCcccc--cc-------CCCcccHHHHHHHHhcCCCCccccCCCcEEEEEEEEeeCCCeE-EEEEEEe
Confidence 1233322111111110 00 01255544333222222111 346899999999999888887 8899999
Q ss_pred eeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEE--eccccccccce-eeccCC
Q 004467 309 SGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTNEK 380 (752)
Q Consensus 309 SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai--~Gl~~~~~~tg-TL~~~~ 380 (752)
+|+|+.||.|.++|.+ . ..+|..|.. ...++++|.|||.|++ .|++...+..| .|+++.
T Consensus 249 ~G~v~~Gd~v~i~P~~----~-----~~~VksI~~----~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~~ 310 (425)
T PRK12317 249 TGVLKVGDKVVFMPAG----V-----VGEVKSIEM----HHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHPD 310 (425)
T ss_pred eccEecCCEEEECCCC----C-----eEEEEEEEE----CCcccCEECCCCeEEEEECCCCHHHccCccEecCCC
Confidence 9999999999998643 1 157777764 3467999999999987 46654444667 666654
No 43
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2e-31 Score=265.15 Aligned_cols=279 Identities=22% Similarity=0.359 Sum_probs=195.7
Q ss_pred hcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCC
Q 004467 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGE 92 (752)
Q Consensus 13 ~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~ 92 (752)
....+..-||+.|||+|||||||+-+|.......-...+-.-.-.|..|+||+|||||.++.+.+...
T Consensus 6 f~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~------------ 73 (394)
T COG0050 6 FERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETA------------ 73 (394)
T ss_pred hcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecC------------
Confidence 34456788999999999999999999943322100000111234688999999999999988655543
Q ss_pred CCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCH-HHHHHHhhCCCCcchhhc
Q 004467 93 RNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDE-SKMMERLWGENFFDPATK 164 (752)
Q Consensus 93 ~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~-~~~inkldg~~~~~~~~~ 164 (752)
++.+..+|||||.||+++|+++++++|+|||||+|.+|.+ .+++..|+|. ++|+||.|
T Consensus 74 ----~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~D---------- 139 (394)
T COG0050 74 ----NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVD---------- 139 (394)
T ss_pred ----CceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEeccc----------
Confidence 7889999999999999999999999999999999999988 7778899986 56789988
Q ss_pred cccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHH--hccccchHHHH
Q 004467 165 KWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM--QTWLPASSALL 242 (752)
Q Consensus 165 ~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~--~~~~P~~~~LL 242 (752)
-.+ + .++.+.+ +-++..+|+..++.-....+- .+ .-++++. ..|...+..||
T Consensus 140 mvd------------------d--~ellelV----emEvreLLs~y~f~gd~~Pii-~g-Sal~ale~~~~~~~~i~eLm 193 (394)
T COG0050 140 MVD------------------D--EELLELV----EMEVRELLSEYGFPGDDTPII-RG-SALKALEGDAKWEAKIEELM 193 (394)
T ss_pred ccC------------------c--HHHHHHH----HHHHHHHHHHcCCCCCCccee-ec-hhhhhhcCCcchHHHHHHHH
Confidence 111 0 0222222 234566777755542211110 01 1112221 24556678999
Q ss_pred HHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEcc
Q 004467 243 EMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMG 322 (752)
Q Consensus 243 d~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~ 322 (752)
+++-+|+|.|.. +.+.||++.|-.++...+.|. +++|||..|+|+.|+.+.+.|
T Consensus 194 ~avd~yip~Per-------------------------~~dkPflmpvEdvfsIsgrgt-vvtGrVeRG~lkvg~eveivG 247 (394)
T COG0050 194 DAVDSYIPTPER-------------------------DIDKPFLMPVEDVFSISGRGT-VVTGRVERGILKVGEEVEIVG 247 (394)
T ss_pred HHHHhcCCCCCC-------------------------cccccccccceeeEEEcCcee-EEEEEEeeeeeccCCEEEEec
Confidence 999999999942 467899999999999999887 999999999999999999875
Q ss_pred CCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEE--eccccccccce-eeccCC
Q 004467 323 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTNEK 380 (752)
Q Consensus 323 ~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai--~Gl~~~~~~tg-TL~~~~ 380 (752)
-. +..+ ..+..+- +.+...++..|||.+++ .|.+.-.+.+| .|+.+.
T Consensus 248 ~~--~~~k-----ttvtgve----mfrk~ld~~~AGdnvg~llRg~~r~~veRGqvLakpg 297 (394)
T COG0050 248 IK--ETQK-----TTVTGVE----MFRKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPG 297 (394)
T ss_pred cc--ccce-----eEEEhHH----HHHHHHhccccCCCcceEEEeccccceecceEeecCC
Confidence 32 1111 1222111 23455789999998875 57665555677 666554
No 44
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.97 E-value=4.9e-31 Score=296.58 Aligned_cols=278 Identities=19% Similarity=0.260 Sum_probs=188.6
Q ss_pred ccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCcccc----------CCC-------ccccCCchhHhHhcceeccceEEE
Q 004467 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-------VRMTDTRADEAERGITIKSTGISL 77 (752)
Q Consensus 15 ~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~----------~g~-------~~~~D~~~~E~eRgiTi~s~~~~~ 77 (752)
..+...||+|+||+|||||||+++||+.+|.+.++. .|+ .+++|++++||+|||||+++...+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 346788999999999999999999999999997642 343 258999999999999999998888
Q ss_pred EEeeccchhccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCC-HHHH
Q 004467 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVD-ESKM 149 (752)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p-~~~~ 149 (752)
.|. +++++|||||||.+|..++.++++.+|+||+||||.+|+. .++..++++ .+++
T Consensus 103 ~~~----------------~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvv 166 (474)
T PRK05124 103 STE----------------KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVA 166 (474)
T ss_pred ccC----------------CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEE
Confidence 775 7899999999999999999999999999999999999975 567778876 4668
Q ss_pred HHHhhCCCCcchhhccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHH
Q 004467 150 MERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKR 229 (752)
Q Consensus 150 inkldg~~~~~~~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~ 229 (752)
+||||..++. . +.++. ..+.+..+++.++... .
T Consensus 167 vNKiD~~~~~--------~---------------------~~~~~----i~~~l~~~~~~~~~~~-~------------- 199 (474)
T PRK05124 167 VNKMDLVDYS--------E---------------------EVFER----IREDYLTFAEQLPGNL-D------------- 199 (474)
T ss_pred EEeeccccch--------h---------------------HHHHH----HHHHHHHHHHhcCCCC-C-------------
Confidence 8999932210 0 00111 1123344444433110 0
Q ss_pred HHhccccchHHHHHHHHhcCCCchhhhhhhhhcccCCCCccccccccccc--CCCCCeEEEEEEEeecCCCCceeEEEEE
Q 004467 230 VMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNC--DPNGPLMLYVSKMIPASDKGRFFAFGRV 307 (752)
Q Consensus 230 ~~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~--~~~~pl~~~V~Kv~~~~~~g~~v~~~RV 307 (752)
..++|++..--+.+.+. +. ...||.|++..++++.+..+ +.+.||.+.|..++......+ -..|||
T Consensus 200 --~~iipvSA~~g~ni~~~--~~-------~~~wy~G~tLl~~L~~i~~~~~~~~~p~r~~I~~v~~~~~~~~-g~~G~V 267 (474)
T PRK05124 200 --IRFVPLSALEGDNVVSQ--SE-------SMPWYSGPTLLEVLETVDIQRVVDAQPFRFPVQYVNRPNLDFR-GYAGTL 267 (474)
T ss_pred --ceEEEEEeecCCCcccc--cc-------cccccchhhHHHHHhhcCCCCCCCCCCceeeEEEEEecCCccc-ceEEEE
Confidence 12344432111111110 00 01256555443333332211 356799999988765322111 246999
Q ss_pred EeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeccCC
Q 004467 308 FSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEK 380 (752)
Q Consensus 308 ~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~Gl~~~~~~tg-TL~~~~ 380 (752)
.+|+|+.||+|+++|.+ . ..+|..|... ..++++|.|||.+++..-+...++.| .||+++
T Consensus 268 ~sG~l~~Gd~v~i~P~~----~-----~~~VksI~~~----~~~v~~A~aG~~V~l~L~~~~~i~rG~VL~~~~ 328 (474)
T PRK05124 268 ASGVVKVGDRVKVLPSG----K-----ESNVARIVTF----DGDLEEAFAGEAITLVLEDEIDISRGDLLVAAD 328 (474)
T ss_pred EeEEEecCCEEEEecCC----c-----eEEEEEEEEc----CccccCcCCCCEEEEEeCCccccCCccEEECCC
Confidence 99999999999998643 1 2578887743 34689999999999864333334667 778765
No 45
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.97 E-value=1.7e-30 Score=290.83 Aligned_cols=280 Identities=22% Similarity=0.336 Sum_probs=191.4
Q ss_pred cccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccc----------cCCC-----ccccCCchhHhHhcceeccceEEEE
Q 004467 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRADEAERGITIKSTGISLY 78 (752)
Q Consensus 14 ~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~----------~~g~-----~~~~D~~~~E~eRgiTi~s~~~~~~ 78 (752)
...+..+||+++||+|||||||+++|++.+|.++++ ..|+ .+++|.+++||+||+|++.+...+.
T Consensus 2 ~~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~ 81 (426)
T TIGR00483 2 AKEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFE 81 (426)
T ss_pred CCCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEc
Confidence 345778999999999999999999999999988752 1232 3689999999999999999998887
Q ss_pred EeeccchhccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchh---HH-------HHHHHhCCC-HH
Q 004467 79 YEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG---VC-------MYASKFGVD-ES 147 (752)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~G---v~-------~~~~~~~~p-~~ 147 (752)
|. ++.++|+|||||.+|..++..+++.+|++|+|||+.+| .. .++..++++ .+
T Consensus 82 ~~----------------~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iI 145 (426)
T TIGR00483 82 TD----------------KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLI 145 (426)
T ss_pred cC----------------CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEE
Confidence 75 78999999999999999999999999999999999998 43 345567765 56
Q ss_pred HHHHHhhCCCCcchhhccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHH
Q 004467 148 KMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALM 227 (752)
Q Consensus 148 ~~inkldg~~~~~~~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~ 227 (752)
+++||+|-.++.. +.++ ...+.+.++++..+..... .
T Consensus 146 VviNK~Dl~~~~~-----------------------------~~~~----~~~~ei~~~~~~~g~~~~~--~-------- 182 (426)
T TIGR00483 146 VAINKMDSVNYDE-----------------------------EEFE----AIKKEVSNLIKKVGYNPDT--V-------- 182 (426)
T ss_pred EEEEChhccCccH-----------------------------HHHH----HHHHHHHHHHHHcCCCccc--c--------
Confidence 6889999322100 0011 1123455556554432110 0
Q ss_pred HHHHhccccchHHHHHHHHhcCCCchhhhhhhhhcccCCCCccccccccccc--CCCCCeEEEEEEEeecCCCCceeEEE
Q 004467 228 KRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNC--DPNGPLMLYVSKMIPASDKGRFFAFG 305 (752)
Q Consensus 228 ~~~~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~--~~~~pl~~~V~Kv~~~~~~g~~v~~~ 305 (752)
.++|++..--+.+.+... ...||.|+...+.++.+..+ +.+.||.++|..++..++.|. ++.|
T Consensus 183 -----~~i~iSA~~g~ni~~~~~---------~~~w~~g~~l~~~l~~~~~~~~~~~~p~r~~i~~v~~~~g~G~-vv~G 247 (426)
T TIGR00483 183 -----PFIPISAWNGDNVIKKSE---------NTPWYKGKTLLEALDALEPPEKPTDKPLRIPIQDVYSITGVGT-VPVG 247 (426)
T ss_pred -----eEEEeecccccccccccc---------CCccccchHHHHHHhcCCCCCCccCCCcEEEEEEEEecCCCeE-EEEE
Confidence 123322111111111000 00144443222212111111 346899999999999888887 8999
Q ss_pred EEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEE--eccccccccce-eeccCC
Q 004467 306 RVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTNEK 380 (752)
Q Consensus 306 RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai--~Gl~~~~~~tg-TL~~~~ 380 (752)
||.+|+|+.||.|.++|.+ . ..+|..|... ..++++|.|||.+++ .+++...+..| .|+++.
T Consensus 248 ~v~~G~i~~gd~v~i~P~~----~-----~~~VksI~~~----~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~~ 312 (426)
T TIGR00483 248 RVETGVLKPGDKVVFEPAG----V-----SGEVKSIEMH----HEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHPD 312 (426)
T ss_pred EEccceeecCCEEEECCCC----c-----EEEEEEEEEC----CcccCEEcCCCEEEEEECCCChhhcccceEEecCC
Confidence 9999999999999998643 1 2577777643 467999999999987 46554445677 666654
No 46
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=6.6e-31 Score=266.18 Aligned_cols=272 Identities=22% Similarity=0.357 Sum_probs=191.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHH---HcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVA---AAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGER 93 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~---~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~ 93 (752)
+..-||+-|||||||||||+-++.. ..|.-. .-+-.-.|.-|+||.|||||.++.+.....
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~---~~kydeID~APEEkaRGITIn~aHveYeTa------------- 115 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAK---FKKYDEIDKAPEEKARGITINAAHVEYETA------------- 115 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccc---cccHhhhhcChhhhhccceEeeeeeeeecc-------------
Confidence 4467999999999999999998832 222110 011234688899999999998877544433
Q ss_pred CCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCH-HHHHHHhhCCCCcchhhcc
Q 004467 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDE-SKMMERLWGENFFDPATKK 165 (752)
Q Consensus 94 ~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~-~~~inkldg~~~~~~~~~~ 165 (752)
.+++--+|||||.||+++|++|.+++|+|||||.|++|.. .+|+.-|++. ++|+||.|-
T Consensus 116 ---~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~---------- 182 (449)
T KOG0460|consen 116 ---KRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDL---------- 182 (449)
T ss_pred ---ccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccc----------
Confidence 6788889999999999999999999999999999999987 7778889987 557899881
Q ss_pred ccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHHh---c-cccchHHH
Q 004467 166 WTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQ---T-WLPASSAL 241 (752)
Q Consensus 166 ~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~~---~-~~P~~~~L 241 (752)
.+ + .++++.+ +-++..+|..+|++-....+ ..+.+|. ++-. . -.+.+..|
T Consensus 183 V~------------------d--~e~leLV----EmE~RElLse~gf~Gd~~Pv-I~GSAL~-ALeg~~peig~~aI~kL 236 (449)
T KOG0460|consen 183 VD------------------D--PEMLELV----EMEIRELLSEFGFDGDNTPV-IRGSALC-ALEGRQPEIGLEAIEKL 236 (449)
T ss_pred cC------------------C--HHHHHHH----HHHHHHHHHHcCCCCCCCCe-eecchhh-hhcCCCccccHHHHHHH
Confidence 10 0 0112211 22456667665554221111 0011110 0000 0 01236789
Q ss_pred HHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEc
Q 004467 242 LEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIM 321 (752)
Q Consensus 242 Ld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~ 321 (752)
||++-+|+|.|.. +.+.||++.|-.++..++.|. ++.||+..|+|++||++-+.
T Consensus 237 ldavDsyip~P~R-------------------------~~~~pFl~pie~vfsI~GRGT-VvtGrlERG~lKkG~e~eiv 290 (449)
T KOG0460|consen 237 LDAVDSYIPTPER-------------------------DLDKPFLLPIEDVFSIPGRGT-VVTGRLERGVLKKGDEVEIV 290 (449)
T ss_pred HHHHhccCCCccc-------------------------ccCCCceeehhheeeecCCce-EEEEEEeecccccCCEEEEe
Confidence 9999999999942 467899999999999999998 99999999999999999998
Q ss_pred cCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEE--eccccccccce-eeccCC
Q 004467 322 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTNEK 380 (752)
Q Consensus 322 ~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai--~Gl~~~~~~tg-TL~~~~ 380 (752)
|-|.+ - ...|..|- ..+..+++|.|||-+++ .|++.-.+++| .++.+.
T Consensus 291 G~~~~--l-----kttvtgie----mF~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pG 341 (449)
T KOG0460|consen 291 GHNKT--L-----KTTVTGIE----MFRKSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPG 341 (449)
T ss_pred ccCcc--e-----eeEeehHH----HHHHHHHhcccccceehhhhcCCHHHHhcccEEecCC
Confidence 75421 1 12333322 23456999999999875 68887777888 777665
No 47
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.97 E-value=1.2e-30 Score=272.75 Aligned_cols=212 Identities=24% Similarity=0.324 Sum_probs=166.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC--------ccccCCchhHhHhcceeccceEEEEEeeccchhccc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD--------VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSY 89 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~--------~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~ 89 (752)
++|||+|+||+|||||||+++|++.+|.+++ .|+ .+++|+.++|++||+|+.++..++.|.
T Consensus 1 ~~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~--~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~--------- 69 (267)
T cd04169 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIRE--AGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYR--------- 69 (267)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCccc--CceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeC---------
Confidence 5899999999999999999999999999887 332 358999999999999999999999996
Q ss_pred cCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh--CCCCcc
Q 004467 90 KGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW--GENFFD 160 (752)
Q Consensus 90 ~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld--g~~~~~ 160 (752)
++.+||+|||||.||..++.++++.+|++|+|+|++.|++ .++...++|+++|+||+| ++++..
T Consensus 70 -------~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~ 142 (267)
T cd04169 70 -------DCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLE 142 (267)
T ss_pred -------CEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHH
Confidence 8999999999999999999999999999999999999865 556678999999999999 566643
Q ss_pred hhh---ccccccC------CCCccccCcceeeEech-----------------HH-HHHHHhhccchhhHHHHHHHcCCC
Q 004467 161 PAT---KKWTTKN------TGSATCKRGFVQFCYEP-----------------IK-QIINTCMNDQKDKLWPMLQKLGVT 213 (752)
Q Consensus 161 ~~~---~~~~~~~------~g~~~~~~~fv~~~l~~-----------------i~-~l~~~~~~~~~~~l~~~l~~l~~~ 213 (752)
.+. ..++... +|.+..+.++++++... ++ .+.+.+.+.+++++++|++. ..
T Consensus 143 ~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~e~~~e~~~~l~e~~~e~--~~ 220 (267)
T cd04169 143 LLDEIEEELGIDCTPLTWPIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDDPKLDELGGDLAEQLREE--LE 220 (267)
T ss_pred HHHHHHHHHCCCceeEEecccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccHHHHHhcCHHHHHHHhCC--Cc
Confidence 332 2333322 45544556666654211 11 23477788889999999986 55
Q ss_pred CChhhHhhchHHHHHHHH-hccccc----------hHHHHHHHHhcCCCc
Q 004467 214 MKSEEKDLMGKALMKRVM-QTWLPA----------SSALLEMMIFHLPSP 252 (752)
Q Consensus 214 l~~~~~~~~~~~l~~~~~-~~~~P~----------~~~LLd~i~~~lPsP 252 (752)
+..+++. ..+.+++. ..++|+ ++.|||++++++|+|
T Consensus 221 ~~~~~~~---~~~~~~~~~~~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~p 267 (267)
T cd04169 221 LLEGAGP---EFDQEAFLAGELTPVFFGSALNNFGVQELLDALVDLAPAP 267 (267)
T ss_pred cchhhhH---HHhHHHHHcCCEEEEEecccccCcCHHHHHHHHHHHCCCC
Confidence 5555542 33344444 578886 789999999999998
No 48
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.96 E-value=8.2e-30 Score=262.10 Aligned_cols=207 Identities=31% Similarity=0.446 Sum_probs=166.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCC----ccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~----~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
||+++||+|+|||||+++|++.+|.+.+ .|+ .+++|+.++|++||+|+.++...+.|+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~--~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~---------------- 62 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRK--LGSVDKGTTRTDTMELERQRGITIFSAVASFQWE---------------- 62 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccc--cccccCCcccCCCchhHhhCCCceeeeeEEEEEC----------------
Confidence 8999999999999999999999999877 443 468999999999999999999999996
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh--CCCCcchhhc---
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW--GENFFDPATK--- 164 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld--g~~~~~~~~~--- 164 (752)
++++||+|||||.+|..++.++++.+|++++|+|+.+|++ .++.+.++|.++|+||+| +++|.+.+..
T Consensus 63 ~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~ 142 (237)
T cd04168 63 DTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKE 142 (237)
T ss_pred CEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHH
Confidence 7999999999999999999999999999999999999976 667778999999999999 5677665553
Q ss_pred cccccCCCCccccCcceee--EechH-HHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHH-hccccc---
Q 004467 165 KWTTKNTGSATCKRGFVQF--CYEPI-KQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA--- 237 (752)
Q Consensus 165 ~~~~~~~g~~~~~~~fv~~--~l~~i-~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~-~~~~P~--- 237 (752)
.++..+.- -..+.++.. ...++ .++++.+++.|++++++|++. ..++.+++. ..+.+++. +.++|+
T Consensus 143 ~~~~~~~~--~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~--~~~~~~el~---~~l~~~~~~~~~~Pv~~g 215 (237)
T cd04168 143 KLSSDIVP--MQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEG--GPIEELELD---NELSARIAKRKVFPVYHG 215 (237)
T ss_pred HHCCCeEE--EECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCC--CCCCHHHHH---HHHHHHHHhCCeEEEEEc
Confidence 34332200 001111111 11122 468999999999999999987 788888773 44555554 578897
Q ss_pred -------hHHHHHHHHhcCCCc
Q 004467 238 -------SSALLEMMIFHLPSP 252 (752)
Q Consensus 238 -------~~~LLd~i~~~lPsP 252 (752)
++.|||.+++++|||
T Consensus 216 sa~~~~Gv~~ll~~~~~~~p~~ 237 (237)
T cd04168 216 SALKGIGIEELLEGITKLFPTS 237 (237)
T ss_pred cccCCcCHHHHHHHHHHhcCCC
Confidence 789999999999998
No 49
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.96 E-value=2.1e-28 Score=271.94 Aligned_cols=268 Identities=16% Similarity=0.177 Sum_probs=177.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEE-eecc---c----hhc--
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYY-EMTD---D----ALK-- 87 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~-~~~~---~----~~~-- 87 (752)
...|||++||+|||||||+++| .| ..+|.+++|++|||||+.++..+.+ .+.. . .++
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aL-----------tg--~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~ 99 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKAL-----------SG--VKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSS 99 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHH-----------hC--CCcccchhhHHhCCchhccccccccccCcccCCcccccccCCC
Confidence 3578999999999999999999 34 2578899999999999998877643 1100 0 000
Q ss_pred ---cccCCC----CCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchh-HH-------HHHHHhCCCH-HHHHH
Q 004467 88 ---SYKGER----NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VC-------MYASKFGVDE-SKMME 151 (752)
Q Consensus 88 ---~~~~~~----~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~G-v~-------~~~~~~~~p~-~~~in 151 (752)
+..... ..-.+.++|||||||.+|.++|.+|++.+|+|++||||.+| ++ ..+..++++. ++++|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlN 179 (460)
T PTZ00327 100 KPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQN 179 (460)
T ss_pred cccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEe
Confidence 000000 01135899999999999999999999999999999999986 43 4566788875 67899
Q ss_pred HhhCCCCcchhhccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHH
Q 004467 152 RLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM 231 (752)
Q Consensus 152 kldg~~~~~~~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~ 231 (752)
|+|..+. +..+.. .+.+..+++... ...
T Consensus 180 KiDlv~~-------------------------------~~~~~~----~~ei~~~l~~~~--~~~--------------- 207 (460)
T PTZ00327 180 KIDLVKE-------------------------------AQAQDQ----YEEIRNFVKGTI--ADN--------------- 207 (460)
T ss_pred cccccCH-------------------------------HHHHHH----HHHHHHHHHhhc--cCC---------------
Confidence 9992111 001111 112333333210 000
Q ss_pred hccccc-------hHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCC-------
Q 004467 232 QTWLPA-------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASD------- 297 (752)
Q Consensus 232 ~~~~P~-------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~------- 297 (752)
..++|+ ++.|++.+.+.+|.|.. +.+.||.++|..+|....
T Consensus 208 ~~iipVSA~~G~nI~~Ll~~L~~~lp~~~r-------------------------~~~~p~r~~Idr~F~V~~~g~~~~~ 262 (460)
T PTZ00327 208 APIIPISAQLKYNIDVVLEYICTQIPIPKR-------------------------DLTSPPRMIVIRSFDVNKPGEDIEN 262 (460)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHhhCCCCCC-------------------------CCCCCcEEEEEEEEeecccCCcccC
Confidence 123454 57899999888887721 346789999987764332
Q ss_pred -CCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccc----eeeeeeeEEEEecCceeeeccccCCCEEEEe-----ccc
Q 004467 298 -KGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDL----YVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-----GLD 367 (752)
Q Consensus 298 -~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~----~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~-----Gl~ 367 (752)
.|. ++.|+|.+|+++.||+|.+.|.+........+ ...+|..|.. ...++++|.|||.++|. +++
T Consensus 263 ~~Gt-Vv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~----~~~~v~~a~aG~~vai~l~ld~~v~ 337 (460)
T PTZ00327 263 LKGG-VAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFA----ENNELQYAVPGGLIGVGTTIDPTLT 337 (460)
T ss_pred CceE-EEEEEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEE----CCeECCEEcCCCEEEEEeccCCCcc
Confidence 465 88999999999999999998753110001111 1247777764 45779999999999985 333
Q ss_pred cccccce-eeccCC
Q 004467 368 QFITKNA-TLTNEK 380 (752)
Q Consensus 368 ~~~~~tg-TL~~~~ 380 (752)
...+..| .|+++.
T Consensus 338 ~~dv~rG~Vl~~~~ 351 (460)
T PTZ00327 338 RADRLVGQVLGYPG 351 (460)
T ss_pred hhhcccccEEEcCC
Confidence 2223456 666544
No 50
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.95 E-value=2e-28 Score=286.54 Aligned_cols=274 Identities=21% Similarity=0.256 Sum_probs=184.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccc----------cCCC-------ccccCCchhHhHhcceeccceEEEEEe
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-------VRMTDTRADEAERGITIKSTGISLYYE 80 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~----------~~g~-------~~~~D~~~~E~eRgiTi~s~~~~~~~~ 80 (752)
...||+|+||+|||||||+++|++.+|.|..+ ..|+ ++++|..++||+||+|++++...+.|+
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 34579999999999999999999999998743 2453 358999999999999999998888875
Q ss_pred eccchhccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCC-HHHHHHH
Q 004467 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVD-ESKMMER 152 (752)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p-~~~~ink 152 (752)
+++++|||||||.+|..++..++..+|++++||||.+|+. .++..++++ .++++||
T Consensus 103 ----------------~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK 166 (632)
T PRK05506 103 ----------------KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNK 166 (632)
T ss_pred ----------------CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEe
Confidence 7899999999999999999999999999999999999975 566778875 4568999
Q ss_pred hhCCCCcchhhccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHHh
Q 004467 153 LWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQ 232 (752)
Q Consensus 153 ldg~~~~~~~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~~ 232 (752)
+|..++.. +.++. ....+.++++.+++.- .
T Consensus 167 ~D~~~~~~-----------------------------~~~~~----i~~~i~~~~~~~~~~~-----------------~ 196 (632)
T PRK05506 167 MDLVDYDQ-----------------------------EVFDE----IVADYRAFAAKLGLHD-----------------V 196 (632)
T ss_pred cccccchh-----------------------------HHHHH----HHHHHHHHHHHcCCCC-----------------c
Confidence 99322100 00111 1223444555544310 0
Q ss_pred ccccchHHHHHHHHhcCCCchhhhhhhhhcccCCCCccccccccccc--CCCCCeEEEEEEEeecCCCCceeEEEEEEee
Q 004467 233 TWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNC--DPNGPLMLYVSKMIPASDKGRFFAFGRVFSG 310 (752)
Q Consensus 233 ~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~--~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SG 310 (752)
.++|++..--+.+.+. ++ ...||.|++..++++.+..+ +.+.||.+.|..++....... -..|+|.+|
T Consensus 197 ~iipiSA~~g~ni~~~--~~-------~~~wy~g~tL~~~l~~~~~~~~~~~~p~r~~i~~v~~~~~~~~-g~~G~v~~G 266 (632)
T PRK05506 197 TFIPISALKGDNVVTR--SA-------RMPWYEGPSLLEHLETVEIASDRNLKDFRFPVQYVNRPNLDFR-GFAGTVASG 266 (632)
T ss_pred cEEEEecccCCCcccc--cc-------CCCcccHhHHHHHHhcCCCCCCcCCCCceeeEEEEEecCCCce-EEEEEEecc
Confidence 1233322111111110 00 01245444332222222111 246899998888765322222 256999999
Q ss_pred eecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeccCC
Q 004467 311 KVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEK 380 (752)
Q Consensus 311 tL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~Gl~~~~~~tg-TL~~~~ 380 (752)
+|+.||+|.++|.+ . ..+|..|... ..++++|.|||.+++..-+...++.| .||+++
T Consensus 267 ~l~~gd~v~i~P~~----~-----~~~VksI~~~----~~~~~~a~aG~~v~i~l~~~~~i~rG~vL~~~~ 324 (632)
T PRK05506 267 VVRPGDEVVVLPSG----K-----TSRVKRIVTP----DGDLDEAFAGQAVTLTLADEIDISRGDMLARAD 324 (632)
T ss_pred eeecCCEEEEcCCC----c-----eEEEEEEEEC----CceeCEEcCCCeEEEEecCccccCCccEEecCC
Confidence 99999999998643 1 2578887642 35599999999999864333334677 888765
No 51
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.95 E-value=3.4e-27 Score=275.56 Aligned_cols=300 Identities=17% Similarity=0.232 Sum_probs=212.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+..+|+|+||+|||||||+++|... . +.+ ...+|||++.+..++.|.
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~--~----------v~~----~e~~GIT~~iga~~v~~~---------------- 335 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKT--N----------VAA----GEAGGITQHIGAYQVETN---------------- 335 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhC--C----------ccc----cccCceeeeccEEEEEEC----------------
Confidence 46679999999999999999999421 1 111 124799999998888885
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhhCCCCcchhhcccccc
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLWGENFFDPATKKWTTK 169 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkldg~~~~~~~~~~~~~~ 169 (752)
++.|+|+|||||.+|...+.++++.+|++|||||+.+|+. .++...++|+++++||+|..+..
T Consensus 336 ~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~---------- 405 (787)
T PRK05306 336 GGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGAN---------- 405 (787)
T ss_pred CEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccC----------
Confidence 6899999999999999999999999999999999999875 66777899999999999921110
Q ss_pred CCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHHhccccc-------hHHHH
Q 004467 170 NTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPA-------SSALL 242 (752)
Q Consensus 170 ~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~~~P~-------~~~LL 242 (752)
...+...+.. ...+.+..+.. ..++|+ ++.|+
T Consensus 406 ------------------~e~V~~eL~~-----~~~~~e~~g~~------------------vp~vpvSAktG~GI~eLl 444 (787)
T PRK05306 406 ------------------PDRVKQELSE-----YGLVPEEWGGD------------------TIFVPVSAKTGEGIDELL 444 (787)
T ss_pred ------------------HHHHHHHHHH-----hcccHHHhCCC------------------ceEEEEeCCCCCCchHHH
Confidence 0000000000 00000111100 013333 45666
Q ss_pred HHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEcc
Q 004467 243 EMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMG 322 (752)
Q Consensus 243 d~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~ 322 (752)
+.+.... +.. . ..++++.|+.++|++++.+++.|. ++++||++|+|+.||.|++.
T Consensus 445 e~I~~~~----e~~-----------------~--l~~~~~~~~~g~V~es~~dkg~G~-v~~v~V~sGtLk~Gd~vv~g- 499 (787)
T PRK05306 445 EAILLQA----EVL-----------------E--LKANPDRPARGTVIEAKLDKGRGP-VATVLVQNGTLKVGDIVVAG- 499 (787)
T ss_pred Hhhhhhh----hhh-----------------h--cccCCCCCcEEEEEEEEEcCCCeE-EEEEEEecCeEecCCEEEEC-
Confidence 6665311 100 0 012567899999999999999897 99999999999999999863
Q ss_pred CCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeccCCCCC------------------
Q 004467 323 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVD------------------ 383 (752)
Q Consensus 323 ~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~Gl~~~~~~tg-TL~~~~~~~------------------ 383 (752)
.+..+++.+.+.+..++++|.|||+|+|.||+++. .+| ||+......
T Consensus 500 -------------~~~gkVr~m~~~~~~~v~~A~pGd~V~I~gl~~~p-~~Gd~l~~~~~e~~a~~~~~~r~~~~~~~~~ 565 (787)
T PRK05306 500 -------------TTYGRVRAMVDDNGKRVKEAGPSTPVEILGLSGVP-QAGDEFVVVEDEKKAREIAEYRQEKAREKKL 565 (787)
T ss_pred -------------CcEEEEEEEECCCCCCCCEEcCCCeEEEeCCCCCC-CCCCEEEEcCCHHHHHHHHHHHHHHHHHHHh
Confidence 14667788888888899999999999999998862 345 777432100
Q ss_pred ----cccccccccc----CCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEcCCCcEEEEecchhh
Q 004467 384 ----AHPIRAMKFS----VSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELH 446 (752)
Q Consensus 384 ----~~~~~~~~~~----~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~etge~il~g~Gelh 446 (752)
...+..+..+ ..+.+.+.|.+...+..+.|..+|.+|..+++.+.+- -+|.|.+.
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i~--------~~~vG~it 628 (787)
T PRK05306 566 ARQQRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNII--------HSGVGAIT 628 (787)
T ss_pred hhccccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEEE--------eeccCCCC
Confidence 0112222111 1236999999999999999999999999999999773 45666664
No 52
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.95 E-value=5.9e-28 Score=244.89 Aligned_cols=129 Identities=62% Similarity=0.963 Sum_probs=114.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
|||+|+||+|||||||+++|++.+|.+++...|..++||++++||+|||||+++.+++.|..... ...+++++.
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~------~~~~~~~~~ 74 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEE------DKADGNEYL 74 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcc------cccCCCceE
Confidence 89999999999999999999999999988777888899999999999999999999999973110 012345789
Q ss_pred EEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
+||+|||||.+|..++.++++.+|+||+|||+++|+. +.+...++|.++++||+|
T Consensus 75 i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD 136 (222)
T cd01885 75 INLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKID 136 (222)
T ss_pred EEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 9999999999999999999999999999999999976 555667899999999999
No 53
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.7e-28 Score=252.51 Aligned_cols=281 Identities=23% Similarity=0.358 Sum_probs=213.6
Q ss_pred ccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccC----------CC-----ccccCCchhHhHhcceeccceEEEEE
Q 004467 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVA----------GD-----VRMTDTRADEAERGITIKSTGISLYY 79 (752)
Q Consensus 15 ~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~----------g~-----~~~~D~~~~E~eRgiTi~s~~~~~~~ 79 (752)
.++...|+.++||+|+||||+.+.|++.+|.++++.. ++ +|+||+..+||++|-|+..+...|..
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 3567889999999999999999999999999877521 11 57999999999999999999998887
Q ss_pred eeccchhccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH--------------HHHHHhCCC
Q 004467 80 EMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--------------MYASKFGVD 145 (752)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~--------------~~~~~~~~p 145 (752)
. ..+++++|+|||.-|..+|+.++++||.++||++|..|.. .+++..++.
T Consensus 155 e----------------~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~ 218 (501)
T KOG0459|consen 155 E----------------NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVK 218 (501)
T ss_pred c----------------ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccc
Confidence 6 7899999999999999999999999999999999988765 777888888
Q ss_pred H-HHHHHHhhCCCCcchhhccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchH
Q 004467 146 E-SKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGK 224 (752)
Q Consensus 146 ~-~~~inkldg~~~~~~~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~ 224 (752)
. ++++||||... -.|+. +.|++ ..+.+..+|..+|.....+
T Consensus 219 ~lVv~vNKMddPt------vnWs~---------------------eRy~E----~~~k~~~fLr~~g~n~~~d------- 260 (501)
T KOG0459|consen 219 HLIVLINKMDDPT------VNWSN---------------------ERYEE----CKEKLQPFLRKLGFNPKPD------- 260 (501)
T ss_pred eEEEEEEeccCCc------cCcch---------------------hhHHH----HHHHHHHHHHHhcccCCCC-------
Confidence 7 56679998211 12332 12443 3466888888877765433
Q ss_pred HHHHHHHhccccchHHHHHHHHhcCCCchhhhhhhhhcccCCCCccccccccccc--CCCCCeEEEEEEEeecCCCCcee
Q 004467 225 ALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNC--DPNGPLMLYVSKMIPASDKGRFF 302 (752)
Q Consensus 225 ~l~~~~~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~--~~~~pl~~~V~Kv~~~~~~g~~v 302 (752)
..++|++......+-+..+ . ...||.|+..-++++.+.+. +.|+|+++.|..-+. +.|+ +
T Consensus 261 -------~~f~p~sg~tG~~~k~~~~--s------~cpwy~gp~fl~~ld~l~~~~R~~~GP~~~pI~~Kyk--dmGT-v 322 (501)
T KOG0459|consen 261 -------KHFVPVSGLTGANVKDRTD--S------VCPWYKGPIFLEYLDELPHLERILNGPIRCPVANKYK--DMGT-V 322 (501)
T ss_pred -------ceeeecccccccchhhccc--c------cCCcccCCccceehhccCcccccCCCCEEeehhhhcc--ccce-E
Confidence 2467775544444444433 1 23388887665555554432 578999999976655 5676 9
Q ss_pred EEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEE--eccccccccce-eeccC
Q 004467 303 AFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTNE 379 (752)
Q Consensus 303 ~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai--~Gl~~~~~~tg-TL~~~ 379 (752)
.+|+|.||+++.|+.+.++|.+ . ...|..|| ++-.+++.+.|||.+-+ .|++.-.+..| .||++
T Consensus 323 v~GKvEsGsi~kg~~lvvMPnk-----~----~veV~~I~----~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL~~~ 389 (501)
T KOG0459|consen 323 VGGKVESGSIKKGQQLVVMPNK-----T----NVEVLGIY----SDDVETDRVAPGENVKLRLKGIEEEDISPGFILCSP 389 (501)
T ss_pred EEEEecccceecCCeEEEccCC-----c----ceEEEEEe----cccceeeeccCCcceEEEecccchhhccCceEEecC
Confidence 9999999999999999999743 1 14566655 34678999999999876 58777666778 88887
Q ss_pred C
Q 004467 380 K 380 (752)
Q Consensus 380 ~ 380 (752)
.
T Consensus 390 ~ 390 (501)
T KOG0459|consen 390 N 390 (501)
T ss_pred C
Confidence 6
No 54
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.94 E-value=2e-25 Score=255.53 Aligned_cols=290 Identities=20% Similarity=0.268 Sum_probs=199.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
+.++|+++||+|||||||+++|.... + . .+..+|||++.+...+.|. +.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~--v----------~----~~e~~GIT~~ig~~~v~~~---------------~~ 134 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTK--V----------A----QGEAGGITQHIGAYHVENE---------------DG 134 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCC--c----------c----cccCCceeecceEEEEEEC---------------CC
Confidence 55799999999999999999994211 1 1 1123589999888777775 13
Q ss_pred eEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhhCCCCcchhhccccccC
Q 004467 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLWGENFFDPATKKWTTKN 170 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkldg~~~~~~~~~~~~~~~ 170 (752)
..++|+|||||.+|...+.++++.+|++|+|+|+.+|+. .++...++|.++++||+|....
T Consensus 135 ~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~------------ 202 (587)
T TIGR00487 135 KMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEA------------ 202 (587)
T ss_pred cEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccC------------
Confidence 389999999999999999999999999999999999875 5566789999999999992100
Q ss_pred CCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHHhccccc-------hHHHHH
Q 004467 171 TGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPA-------SSALLE 243 (752)
Q Consensus 171 ~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~~~P~-------~~~LLd 243 (752)
+.+.+...+...+.. .+.+.. -..++|+ ++.|++
T Consensus 203 ----------------------------~~e~v~~~L~~~g~~--~~~~~~---------~~~~v~iSAktGeGI~eLl~ 243 (587)
T TIGR00487 203 ----------------------------NPDRVKQELSEYGLV--PEDWGG---------DTIFVPVSALTGDGIDELLD 243 (587)
T ss_pred ----------------------------CHHHHHHHHHHhhhh--HHhcCC---------CceEEEEECCCCCChHHHHH
Confidence 000111111111110 000000 0023343 455666
Q ss_pred HHHhc--CCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEc
Q 004467 244 MMIFH--LPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIM 321 (752)
Q Consensus 244 ~i~~~--lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~ 321 (752)
.+... ++.+ ..+++.|+.++|++++.+++.|. +++++|++|+|+.||.|.+.
T Consensus 244 ~I~~~~~~~~l-------------------------~~~~~~~~~~~V~ev~~~~g~G~-v~~~~V~~GtL~~Gd~iv~~ 297 (587)
T TIGR00487 244 MILLQSEVEEL-------------------------KANPNGQASGVVIEAQLDKGRGP-VATVLVQSGTLRVGDIVVVG 297 (587)
T ss_pred hhhhhhhhccc-------------------------cCCCCCCceeEEEEEEEeCCCcE-EEEEEEEeCEEeCCCEEEEC
Confidence 65421 1100 11466899999999999988887 99999999999999999864
Q ss_pred cCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeccCCCCC-----------------
Q 004467 322 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVD----------------- 383 (752)
Q Consensus 322 ~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~Gl~~~~~~tg-TL~~~~~~~----------------- 383 (752)
+ . . .+|..++... ...+++|.||++|.|.|+++.. ..| +++......
T Consensus 298 ~-~----~------~kVr~l~~~~---g~~v~~a~~g~~v~i~Gl~~~p-~aGd~~~~~~~e~~a~~~~~~r~~~~~~~~ 362 (587)
T TIGR00487 298 A-A----Y------GRVRAMIDEN---GKSVKEAGPSKPVEILGLSDVP-AAGDEFIVFKDEKDARLVAEKRAGKLRQKA 362 (587)
T ss_pred C-C----c------cEEEEEECCC---CCCCCEECCCCEEEEeCCCCCC-CCCCEEEEcCCHHHHHHHHHHHHHHHHHHh
Confidence 3 1 1 3566655443 4568999999999999998752 334 665321000
Q ss_pred -----ccccccccc----cCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEE
Q 004467 384 -----AHPIRAMKF----SVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCT 430 (752)
Q Consensus 384 -----~~~~~~~~~----~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~ 430 (752)
...+..+.. ...|.+.+.|++.+.+..++|.++|.++..+++++.+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~ 418 (587)
T TIGR00487 363 LSRSVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVI 418 (587)
T ss_pred hhhccccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEE
Confidence 011111111 12488999999999999999999999999999999884
No 55
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.94 E-value=4.9e-26 Score=262.51 Aligned_cols=240 Identities=23% Similarity=0.318 Sum_probs=174.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
.|+++||+|||||||+++| .| ..+|..++|++|||||+.+...+... ++..+
T Consensus 2 ii~~~GhvdhGKTtLi~aL-----------tg--~~~dr~~eE~~rGiTI~l~~~~~~~~---------------~g~~i 53 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAI-----------TG--VNADRLPEEKKRGMTIDLGYAYWPQP---------------DGRVL 53 (614)
T ss_pred EEEEECCCCCCHHHHHHHH-----------hC--CCCccchhcccCCceEEeeeEEEecC---------------CCcEE
Confidence 5899999999999999999 33 23788999999999998876655443 25679
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCH-HHHHHHhhCCCCcchhhccccccCCC
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDE-SKMMERLWGENFFDPATKKWTTKNTG 172 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~-~~~inkldg~~~~~~~~~~~~~~~~g 172 (752)
+|||||||.+|..+|.+++..+|++++|||+.+|+. .++..+++|. ++++||+|-.+.
T Consensus 54 ~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~-------------- 119 (614)
T PRK10512 54 GFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDE-------------- 119 (614)
T ss_pred EEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCH--------------
Confidence 999999999999999999999999999999999876 5567788886 578899992110
Q ss_pred CccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHHhccccc-------hHHHHHHH
Q 004467 173 SATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPA-------SSALLEMM 245 (752)
Q Consensus 173 ~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~~~P~-------~~~LLd~i 245 (752)
+.++. ..+.+.++++..+... . .++|+ ++.|++.+
T Consensus 120 -----------------~~~~~----v~~ei~~~l~~~~~~~--~---------------~ii~VSA~tG~gI~~L~~~L 161 (614)
T PRK10512 120 -----------------ARIAE----VRRQVKAVLREYGFAE--A---------------KLFVTAATEGRGIDALREHL 161 (614)
T ss_pred -----------------HHHHH----HHHHHHHHHHhcCCCC--C---------------cEEEEeCCCCCCCHHHHHHH
Confidence 00111 1223444554433211 0 12333 46777777
Q ss_pred HhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCC
Q 004467 246 IFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNY 325 (752)
Q Consensus 246 ~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~ 325 (752)
.+. |.|.. +.++||.++|..++..++.|. ++.|+|.||+|+.||+|.+.|.+
T Consensus 162 ~~~-~~~~~-------------------------~~~~~~rl~Id~vf~v~G~Gt-VvtGtv~sG~l~~Gd~v~i~p~~- 213 (614)
T PRK10512 162 LQL-PEREH-------------------------AAQHRFRLAIDRAFTVKGAGL-VVTGTALSGEVKVGDTLWLTGVN- 213 (614)
T ss_pred HHh-hcccc-------------------------CcCCCceEEEEEEeccCCCeE-EEEEEEecceEecCCEEEEcCCC-
Confidence 654 33311 245799999999999888887 99999999999999999987532
Q ss_pred CCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEE--ec-cccccccce-eeccCC
Q 004467 326 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VG-LDQFITKNA-TLTNEK 380 (752)
Q Consensus 326 ~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai--~G-l~~~~~~tg-TL~~~~ 380 (752)
. ..+|..|.. +..++++|.||+.+++ .| ++...++.| .|+++.
T Consensus 214 ---~-----~~~VrsIq~----~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~ 260 (614)
T PRK10512 214 ---K-----PMRVRGLHA----QNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADA 260 (614)
T ss_pred ---C-----cEEEEEEec----CCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCC
Confidence 1 146776653 3467999999999987 45 554445677 777543
No 56
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.93 E-value=2.1e-26 Score=242.32 Aligned_cols=209 Identities=27% Similarity=0.442 Sum_probs=163.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCC----ccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~----~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
||+++||+|+|||||+++|++.+|.+.+ .|+ .+++|+.++|++||+|+.++...+.|.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~--~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~---------------- 62 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDR--LGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK---------------- 62 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCcc--CCeecCCcccCCCCHHHHhhcccccceeEEEEEC----------------
Confidence 7999999999999999999999998766 332 468999999999999999999999996
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh--CCCCcchhh---c
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW--GENFFDPAT---K 164 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld--g~~~~~~~~---~ 164 (752)
++.+++||||||.+|..++.++++.+|++++|+|+..|.. .++...++|.++|+||+| ++++.+.+. +
T Consensus 63 ~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~ 142 (268)
T cd04170 63 GHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQE 142 (268)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHH
Confidence 7899999999999999999999999999999999999866 556778999999999999 555544433 1
Q ss_pred cccccC------CCCccccCcceeeEe--------------chH------------HHHHHHhhccchhhHHHHHHHcCC
Q 004467 165 KWTTKN------TGSATCKRGFVQFCY--------------EPI------------KQIINTCMNDQKDKLWPMLQKLGV 212 (752)
Q Consensus 165 ~~~~~~------~g~~~~~~~fv~~~l--------------~~i------------~~l~~~~~~~~~~~l~~~l~~l~~ 212 (752)
.+.... .+.+....++++++. .++ .++.+.+++.|++++++|++. .
T Consensus 143 ~~~~~~~~~~ip~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~--~ 220 (268)
T cd04170 143 AFGRPVVPLQLPIGEGDDFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEAREELLEAVAETDDELMEKYLEG--G 220 (268)
T ss_pred HhCCCeEEEEecccCCCceeEEEEcccCEEEEccCCCcceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCC--C
Confidence 222211 222222334443321 111 246788889999999999987 7
Q ss_pred CCChhhHhhchHHHHHHHH-hccccc----------hHHHHHHHHhcCCCc
Q 004467 213 TMKSEEKDLMGKALMKRVM-QTWLPA----------SSALLEMMIFHLPSP 252 (752)
Q Consensus 213 ~l~~~~~~~~~~~l~~~~~-~~~~P~----------~~~LLd~i~~~lPsP 252 (752)
.++.+++. ..+.+++. +.++|+ ++.||+++.+++|+|
T Consensus 221 ~~~~~~l~---~~l~~~~~~~~~~pv~~gSa~~~~G~~~ll~~~~~~~p~p 268 (268)
T cd04170 221 ELTEEELH---AGLRRALRAGLLVPVLCGSALTNIGVRELLDALVHLLPSP 268 (268)
T ss_pred CCCHHHHH---HHHHHHHHhCCEEEEEEeeCCCCcCHHHHHHHHHHhCCCC
Confidence 78887773 44555554 567786 789999999999998
No 57
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.93 E-value=9.9e-26 Score=249.98 Aligned_cols=270 Identities=21% Similarity=0.294 Sum_probs=175.2
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccch--hccccCCC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDA--LKSYKGER 93 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~--~~~~~~~~ 93 (752)
.+...||+++||+|||||||+++| .| .++|.+++|++||+|++++...+.|...... -+.+....
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L-----------~~--~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQAL-----------TG--VWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEP 72 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHh-----------hC--eecccCHhHHhcCcEEEecccccccccccccCccccccccc
Confidence 355789999999999999999999 23 3699999999999999988777666311000 00000000
Q ss_pred --------CCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhH-H-------HHHHHhCCC-HHHHHHHhhCC
Q 004467 94 --------NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-C-------MYASKFGVD-ESKMMERLWGE 156 (752)
Q Consensus 94 --------~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv-~-------~~~~~~~~p-~~~~inkldg~ 156 (752)
....+.++|+|||||.+|..++.++++.+|++++|||+.+|+ . .++..++++ .++++||+|..
T Consensus 73 ~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~ 152 (411)
T PRK04000 73 KCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLV 152 (411)
T ss_pred cccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccc
Confidence 011478999999999999999999999999999999999875 2 455667775 56777999821
Q ss_pred CCcchhhccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHHhcccc
Q 004467 157 NFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLP 236 (752)
Q Consensus 157 ~~~~~~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~~~P 236 (752)
+. +...+.+ +.+..+++.. ... . ..++|
T Consensus 153 ~~---------------------------~~~~~~~--------~~i~~~l~~~--~~~--~-------------~~ii~ 180 (411)
T PRK04000 153 SK---------------------------ERALENY--------EQIKEFVKGT--VAE--N-------------APIIP 180 (411)
T ss_pred cc---------------------------hhHHHHH--------HHHHHHhccc--cCC--C-------------CeEEE
Confidence 10 0000000 1122222210 000 0 01233
Q ss_pred c-------hHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecC--------CCCce
Q 004467 237 A-------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPAS--------DKGRF 301 (752)
Q Consensus 237 ~-------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~--------~~g~~ 301 (752)
+ ++.|++.+.+.+|.|.. +.+.||.++|.++|... +.|.
T Consensus 181 vSA~~g~gI~~L~~~L~~~l~~~~~-------------------------~~~~~~r~~I~~~f~v~~~g~~~~~~~G~- 234 (411)
T PRK04000 181 VSALHKVNIDALIEAIEEEIPTPER-------------------------DLDKPPRMYVARSFDVNKPGTPPEKLKGG- 234 (411)
T ss_pred EECCCCcCHHHHHHHHHHhCCCCCC-------------------------CCCCCceEEEEeeeeecCCCccccCCcce-
Confidence 2 46788888888876621 24678999999887433 2454
Q ss_pred eEEEEEEeeeecCCCEEEEccCCC-CCCCcccc--eeeeeeeEEEEecCceeeeccccCCCEEEEe-----ccccccccc
Q 004467 302 FAFGRVFSGKVSTGLKVRIMGPNY-VPGEKKDL--YVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-----GLDQFITKN 373 (752)
Q Consensus 302 v~~~RV~SGtL~~Gd~v~i~~~n~-~~~~~~~~--~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~-----Gl~~~~~~t 373 (752)
++.|||.+|+|++||.|.++|.+. ..+....+ ...+|..|.. ...++++|.|||.+++. +++...+..
T Consensus 235 Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~----~~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~ 310 (411)
T PRK04000 235 VIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRA----GGEKVEEARPGGLVGVGTKLDPSLTKADALA 310 (411)
T ss_pred EEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEE----CCEECCEEcCCCEEEEEeccCCCCCHHHccC
Confidence 889999999999999999986431 00000011 1246777663 34779999999999885 232222345
Q ss_pred e-eeccCC
Q 004467 374 A-TLTNEK 380 (752)
Q Consensus 374 g-TL~~~~ 380 (752)
| .|+++.
T Consensus 311 G~vl~~~~ 318 (411)
T PRK04000 311 GSVAGKPG 318 (411)
T ss_pred ccEEEcCC
Confidence 6 666654
No 58
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.93 E-value=1e-26 Score=231.68 Aligned_cols=122 Identities=37% Similarity=0.541 Sum_probs=109.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccC--CCccccCCchhHhHhcceeccceEEEE--EeeccchhccccCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVA--GDVRMTDTRADEAERGITIKSTGISLY--YEMTDDALKSYKGE 92 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~--g~~~~~D~~~~E~eRgiTi~s~~~~~~--~~~~~~~~~~~~~~ 92 (752)
+++|||+++||+|||||||+++|++..|.+.+... +..+++|..++|++||+|++++...+. +.
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~------------ 68 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNEN------------ 68 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTES------------
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccccccc------------
Confidence 47999999999999999999999999998776311 113579999999999999999999988 64
Q ss_pred CCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 93 RNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 93 ~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
.+.++|||||||.||..++.++++.+|+||+||||.+|++ .++..+++|.++++||||
T Consensus 69 ----~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D 133 (188)
T PF00009_consen 69 ----NRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMD 133 (188)
T ss_dssp ----SEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCT
T ss_pred ----ccceeecccccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeecc
Confidence 8999999999999999999999999999999999999977 778889999999999999
No 59
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=9.3e-25 Score=220.45 Aligned_cols=319 Identities=21% Similarity=0.294 Sum_probs=204.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEE-Eeeccch-----hccccC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLY-YEMTDDA-----LKSYKG 91 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~-~~~~~~~-----~~~~~~ 91 (752)
..-||+.+||||||||||+.+| .| -.+|.+.+|-+|||||+...+... |++++-. .....+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~Al-----------sG--vwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C 75 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKAL-----------SG--VWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKC 75 (415)
T ss_pred cceEeeeeeecccchhhheehh-----------hc--eeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCC
Confidence 4679999999999999999999 56 478999999999999999887664 3332211 111111
Q ss_pred CCC----CCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH--------HHHHHhCCCHH-HHHHHhhCCCC
Q 004467 92 ERN----GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--------MYASKFGVDES-KMMERLWGENF 158 (752)
Q Consensus 92 ~~~----~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~--------~~~~~~~~p~~-~~inkldg~~~ 158 (752)
... .--+++.|+|+|||.-+...|.+|+..+|+|||||+|.+... ..++-+|+..+ ++.||+|
T Consensus 76 ~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKID---- 151 (415)
T COG5257 76 PNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKID---- 151 (415)
T ss_pred CCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccc----
Confidence 111 123689999999999999999999999999999999998643 44455677654 4458877
Q ss_pred cchhhccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHHhccccc-
Q 004467 159 FDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPA- 237 (752)
Q Consensus 159 ~~~~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~~~P~- 237 (752)
-.++ +. +.+..+.+.+|++. ...+. ..++|+
T Consensus 152 ------lV~~------------------------E~-AlE~y~qIk~FvkG---t~Ae~--------------aPIIPiS 183 (415)
T COG5257 152 ------LVSR------------------------ER-ALENYEQIKEFVKG---TVAEN--------------APIIPIS 183 (415)
T ss_pred ------eecH------------------------HH-HHHHHHHHHHHhcc---cccCC--------------Cceeeeh
Confidence 1111 11 11223445556554 11100 123554
Q ss_pred ------hHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCC--------CCceeE
Q 004467 238 ------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASD--------KGRFFA 303 (752)
Q Consensus 238 ------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~--------~g~~v~ 303 (752)
++.|+++|.+++|.|.. |.+.|.+++|.+.|..+. +|+ +.
T Consensus 184 A~~~~NIDal~e~i~~~IptP~r-------------------------d~~~~p~m~v~RSFDVNkPGt~~~~L~GG-Vi 237 (415)
T COG5257 184 AQHKANIDALIEAIEKYIPTPER-------------------------DLDKPPRMYVARSFDVNKPGTPPEELKGG-VI 237 (415)
T ss_pred hhhccCHHHHHHHHHHhCCCCcc-------------------------CCCCCceEEEEeecccCCCCCCHHHccCc-ee
Confidence 68999999999999942 567888999988886443 345 67
Q ss_pred EEEEEeeeecCCCEEEEccCCCCCCCcccc-eeeeeeeEEEEecCceeeeccccCCCEEEE-eccccccccceeeccCCC
Q 004467 304 FGRVFSGKVSTGLKVRIMGPNYVPGEKKDL-YVKSVQRTVIWMGKKQETVEDVPCGNTVAM-VGLDQFITKNATLTNEKE 381 (752)
Q Consensus 304 ~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~-~~~kv~~l~~~~g~~~~~V~ea~AGdIvai-~Gl~~~~~~tgTL~~~~~ 381 (752)
-|-+..|.|+.||++.+.|.- ...+.+.. ..--...+..+++ ....+++|.+|-.+++ ++|+.++++.+.|...--
T Consensus 238 GGsl~~G~l~vGDEIEIrPGi-~v~k~~k~~~~pi~T~i~Sl~a-g~~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~V~ 315 (415)
T COG5257 238 GGSLVQGVLRVGDEIEIRPGI-VVEKGGKTVWEPITTEIVSLQA-GGEDVEEARPGGLVGVGTKLDPTLTKADALVGQVV 315 (415)
T ss_pred cceeeeeeEecCCeEEecCCe-EeecCCceEEEEeeEEEEEEEe-CCeeeeeccCCceEEEecccCcchhhhhhhccccc
Confidence 789999999999999987532 11111110 0011122222333 3467999999999998 588887776654443210
Q ss_pred CCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEcCCCcEEEEecchh
Q 004467 382 VDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGEL 445 (752)
Q Consensus 382 ~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~etge~il~g~Gel 445 (752)
..+-.++ +...++.++- .-|.++.-.+-.++++.-.++|.++...|.-
T Consensus 316 G~pG~lP------pv~~~~~ie~----------~LL~RvvG~~~e~kvepik~~E~Lml~VGta 363 (415)
T COG5257 316 GKPGTLP------PVWTSIRIEY----------HLLERVVGTKEELKVEPIKTNEVLMLNVGTA 363 (415)
T ss_pred cCCCCCC------CceEEEEEEe----------eehhhhhCcccccccccccCCCeEEEEeecc
Confidence 0111111 3333444443 1245555555666665337888888877754
No 60
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.92 E-value=6.2e-25 Score=243.89 Aligned_cols=267 Identities=23% Similarity=0.314 Sum_probs=174.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhcc---ccCC--
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKS---YKGE-- 92 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~---~~~~-- 92 (752)
...||+++||+|||||||+++| .| ..+|.+++|++||+|+.++...+.|.... .+.+ +...
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~L-----------t~--~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~-~~~~~~~~~~~~~ 68 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKAL-----------TG--VWTDTHSEELKRGISIRLGYADAEIYKCP-ECDGPECYTTEPV 68 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHH-----------hC--eecccCHhHHHcCceeEeccccccccccc-ccCcccccccccc
Confidence 4579999999999999999999 23 35899999999999999988777653110 0000 0000
Q ss_pred ------CCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhH-H-------HHHHHhCCC-HHHHHHHhhCCC
Q 004467 93 ------RNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-C-------MYASKFGVD-ESKMMERLWGEN 157 (752)
Q Consensus 93 ------~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv-~-------~~~~~~~~p-~~~~inkldg~~ 157 (752)
.....+.++|+|||||.+|..++.++++.+|+||+||||.+|+ . ..+..++++ .++++||+|-.+
T Consensus 69 ~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~ 148 (406)
T TIGR03680 69 CPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVS 148 (406)
T ss_pred ccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCC
Confidence 0012478999999999999999999999999999999999986 3 455667775 577789998211
Q ss_pred CcchhhccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHHhccccc
Q 004467 158 FFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPA 237 (752)
Q Consensus 158 ~~~~~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~~~P~ 237 (752)
. +...+.+ +.+..+++... . .. ..++|+
T Consensus 149 ~---------------------------~~~~~~~--------~~i~~~l~~~~--~--~~-------------~~ii~v 176 (406)
T TIGR03680 149 K---------------------------EKALENY--------EEIKEFVKGTV--A--EN-------------APIIPV 176 (406)
T ss_pred H---------------------------HHHHHHH--------HHHHhhhhhcc--c--CC-------------CeEEEE
Confidence 1 0000001 11222222210 0 00 012332
Q ss_pred -------hHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCC--------CCcee
Q 004467 238 -------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASD--------KGRFF 302 (752)
Q Consensus 238 -------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~--------~g~~v 302 (752)
++.|++.+.+.+|.|.. +.+.||.++|+.++...+ .|. +
T Consensus 177 SA~~g~gi~~L~e~L~~~l~~~~~-------------------------~~~~~~~~~I~~~f~v~~~g~~~~~~~G~-V 230 (406)
T TIGR03680 177 SALHNANIDALLEAIEKFIPTPER-------------------------DLDKPPLMYVARSFDVNKPGTPPEKLKGG-V 230 (406)
T ss_pred ECCCCCChHHHHHHHHHhCCCCCC-------------------------CCCCCcEEEEEEEEeecCCCccccCCcee-E
Confidence 46888888888886621 346789999998875433 454 7
Q ss_pred EEEEEEeeeecCCCEEEEccCCCC-CCCcccc--eeeeeeeEEEEecCceeeeccccCCCEEEEe-----ccccccccce
Q 004467 303 AFGRVFSGKVSTGLKVRIMGPNYV-PGEKKDL--YVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-----GLDQFITKNA 374 (752)
Q Consensus 303 ~~~RV~SGtL~~Gd~v~i~~~n~~-~~~~~~~--~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~-----Gl~~~~~~tg 374 (752)
+.|||.+|+|+.||.|.++|.+.. .+....+ ...+|..|.. ...++++|.|||.++|. +++.-.+..|
T Consensus 231 v~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~----~~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G 306 (406)
T TIGR03680 231 IGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRA----GGYKVEEARPGGLVGVGTKLDPALTKADALAG 306 (406)
T ss_pred EEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEE----CCEECCEEcCCCEEEEeeccCCCCCHHHcccc
Confidence 899999999999999999864310 0000000 1146777663 34789999999999974 3333223456
Q ss_pred -eeccCC
Q 004467 375 -TLTNEK 380 (752)
Q Consensus 375 -TL~~~~ 380 (752)
.|++++
T Consensus 307 ~vl~~~~ 313 (406)
T TIGR03680 307 QVVGKPG 313 (406)
T ss_pred cEEEcCC
Confidence 566554
No 61
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.92 E-value=2.2e-24 Score=249.81 Aligned_cols=305 Identities=18% Similarity=0.219 Sum_probs=205.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+.++|+|+||+|||||||+++|....... ++.+|+|+......+.|.. ++.
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~----------------~e~~GiTq~i~~~~v~~~~------------~~~ 293 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ----------------KEAGGITQKIGAYEVEFEY------------KDE 293 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc----------------ccCCccccccceEEEEEEe------------cCC
Confidence 578999999999999999999996543322 2236899888877777752 123
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhhCCCCcchhhcccccc
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLWGENFFDPATKKWTTK 169 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkldg~~~~~~~~~~~~~~ 169 (752)
++.++|+|||||.+|...+.++++.+|++||||||.+|+. ..+...++|.++++||+|....
T Consensus 294 ~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~----------- 362 (742)
T CHL00189 294 NQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANA----------- 362 (742)
T ss_pred ceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCcccc-----------
Confidence 5899999999999999999999999999999999999865 5667789999999999992110
Q ss_pred CCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHHhccccc-------hHHHH
Q 004467 170 NTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPA-------SSALL 242 (752)
Q Consensus 170 ~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~~~P~-------~~~LL 242 (752)
. ...+.+.+.. ...+.+..+.. ..++|+ ++.|+
T Consensus 363 ---------~--------~e~v~~eL~~-----~~ll~e~~g~~------------------vpvv~VSAktG~GIdeLl 402 (742)
T CHL00189 363 ---------N--------TERIKQQLAK-----YNLIPEKWGGD------------------TPMIPISASQGTNIDKLL 402 (742)
T ss_pred ---------C--------HHHHHHHHHH-----hccchHhhCCC------------------ceEEEEECCCCCCHHHHH
Confidence 0 0000000000 00000111100 012332 45677
Q ss_pred HHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEcc
Q 004467 243 EMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMG 322 (752)
Q Consensus 243 d~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~ 322 (752)
+.+....+.+. ..++++.|+.++|+++..+++.|. ++++||++|+|+.||.|.+.+
T Consensus 403 e~I~~l~e~~~-----------------------lk~~~~~~~~g~V~e~~iD~~~G~-V~~~~V~sGtLr~GD~vv~g~ 458 (742)
T CHL00189 403 ETILLLAEIED-----------------------LKADPTQLAQGIILEAHLDKTKGP-VATILVQNGTLHIGDIIVIGT 458 (742)
T ss_pred Hhhhhhhhhhc-----------------------ccCCCCCCceEEEEEEEEcCCCce-EEEEEEEcCEEecCCEEEECC
Confidence 77765432110 011456789999999999888887 999999999999999998642
Q ss_pred CCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeccCCCCC-c----------------
Q 004467 323 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVD-A---------------- 384 (752)
Q Consensus 323 ~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~Gl~~~~~~tg-TL~~~~~~~-~---------------- 384 (752)
+.++++.+.+....++++|.||++|+|.|++.. ..+| +|.-..... .
T Consensus 459 --------------~~gkVr~m~~~~~~~v~~a~pgdiV~I~gl~~~-~~~Gd~l~v~~~e~~a~~~~~~~~~~~~~~~~ 523 (742)
T CHL00189 459 --------------SYAKIRGMINSLGNKINLATPSSVVEIWGLSSV-PATGEHFQVFNSEKEAKLKIIKNKENNKKDTT 523 (742)
T ss_pred --------------cceEEEEEEcCCCcCccEEcCCCceEecCcccC-CCCCCEEEEeCCHHHHHHHHHHHHHHHHHhhh
Confidence 345677777778889999999999999999654 2455 554322100 0
Q ss_pred --ccccc----ccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEcCCCcEEEEecchhhH
Q 004467 385 --HPIRA----MKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHL 447 (752)
Q Consensus 385 --~~~~~----~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~etge~il~g~GelhL 447 (752)
..+.. +.-...+.+.+-|.....+-.+.|..+|.++..+.-.+. ++-+|.|.+.-
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~EAi~~~l~~~~~~~v~i~--------i~~~~vG~it~ 584 (742)
T CHL00189 524 KRITLSTTKTINKKDNKKQINLIIKTDTQGSIEAIINSISQIPQKKVQLN--------ILYASLGEVTE 584 (742)
T ss_pred cccchHHHHHHhhhcCCceeeEEEEeCCcchHHHHHHHHHhcCCCcEEEE--------EEEeecCCCCH
Confidence 00000 001124678888899999999999999988854433332 34466777643
No 62
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.1e-24 Score=230.87 Aligned_cols=240 Identities=25% Similarity=0.341 Sum_probs=170.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
+|+..||+|||||||+.++ .| ..+|..++|++||+||+.+..++... ++.+
T Consensus 2 ii~t~GhidHgkT~L~~al-----------tg--~~~d~l~EekKRG~TiDlg~~y~~~~----------------d~~~ 52 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKAL-----------TG--GVTDRLPEEKKRGITIDLGFYYRKLE----------------DGVM 52 (447)
T ss_pred eEEEeeeeeccchhhhhhh-----------cc--cccccchhhhhcCceEeeeeEeccCC----------------CCce
Confidence 5899999999999999999 44 46899999999999999987665554 6799
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCH-HHHHHHhhCCCCcchhhccccccCCC
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDE-SKMMERLWGENFFDPATKKWTTKNTG 172 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~-~~~inkldg~~~~~~~~~~~~~~~~g 172 (752)
.|||+|||.||..+|+.|+...|+|+||||+.+|+. ..++-+|++. +++++|+|..+-.
T Consensus 53 ~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~------------- 119 (447)
T COG3276 53 GFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEA------------- 119 (447)
T ss_pred EEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHH-------------
Confidence 999999999999999999999999999999999987 6667789998 7778988821110
Q ss_pred CccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHHhcccc--chHHHHHHHHhcCC
Q 004467 173 SATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLP--ASSALLEMMIFHLP 250 (752)
Q Consensus 173 ~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~~~P--~~~~LLd~i~~~lP 250 (752)
..++.+.++++.+. +....+ .+ ....+ .++.|=+.+.+..
T Consensus 120 -------------------------r~e~~i~~Il~~l~--l~~~~i-------~~---~s~~~g~GI~~Lk~~l~~L~- 161 (447)
T COG3276 120 -------------------------RIEQKIKQILADLS--LANAKI-------FK---TSAKTGRGIEELKNELIDLL- 161 (447)
T ss_pred -------------------------HHHHHHHHHHhhcc--cccccc-------cc---cccccCCCHHHHHHHHHHhh-
Confidence 01122333333321 111000 00 00000 1223333332221
Q ss_pred CchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCc
Q 004467 251 SPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEK 330 (752)
Q Consensus 251 sP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~ 330 (752)
.+. +.+.+.||.++|...|...+.|. ++.|.++||+++.||.+++.|-| +
T Consensus 162 ~~~------------------------e~d~~~~fri~IDraFtVKGvGT-VVtGtv~sG~V~v~D~L~l~p~~----k- 211 (447)
T COG3276 162 EEI------------------------ERDEQKPFRIAIDRAFTVKGVGT-VVTGTVLSGEVKVGDKLYLSPIN----K- 211 (447)
T ss_pred hhh------------------------hhccCCceEEEEeeEEEeccccE-EEEeEEeeeeEEECCEEEEecCC----C-
Confidence 111 11567899999999999999998 99999999999999999987633 2
Q ss_pred ccceeeeeeeEEEEecCceeeeccccCCCEEEEe--ccccccccce-eecc
Q 004467 331 KDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQFITKNA-TLTN 378 (752)
Q Consensus 331 ~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~--Gl~~~~~~tg-TL~~ 378 (752)
..+|..|.. ..+++++|.||+-|++. |.+.-.+..| -|.+
T Consensus 212 ----~v~VRsIq~----~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~ 254 (447)
T COG3276 212 ----EVRVRSIQA----HDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLK 254 (447)
T ss_pred ----eEEEEeeee----cCcchhhccccceeeeecCCCCHHHhhcccEecc
Confidence 256776653 44679999999999874 6544444667 4443
No 63
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.91 E-value=5e-24 Score=245.36 Aligned_cols=236 Identities=25% Similarity=0.299 Sum_probs=169.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
||+++||+|||||||+++|. |. -+|..++|++||+|++.+...+.+. ++.+
T Consensus 2 ~I~iiG~~d~GKTTLi~aLt-----------g~--~~d~~~eE~~rGiTid~~~~~~~~~----------------~~~v 52 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALT-----------GI--AADRLPEEKKRGMTIDLGFAYFPLP----------------DYRL 52 (581)
T ss_pred EEEEECCCCCCHHHHHHHHh-----------Cc--cCcCChhHhcCCceEEeEEEEEEeC----------------CEEE
Confidence 79999999999999999993 31 2688899999999999888777765 5899
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCC-HHHHHHHhhCCCCcchhhccccccCCC
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVD-ESKMMERLWGENFFDPATKKWTTKNTG 172 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p-~~~~inkldg~~~~~~~~~~~~~~~~g 172 (752)
+|+|||||.+|..++..++..+|++++|||+.+|+. .++..+|+| .++++||+|-.+.
T Consensus 53 ~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~-------------- 118 (581)
T TIGR00475 53 GFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNE-------------- 118 (581)
T ss_pred EEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCH--------------
Confidence 999999999999999999999999999999999864 556778999 8888999992110
Q ss_pred CccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHHhccccc-------hHHHHHHH
Q 004467 173 SATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPA-------SSALLEMM 245 (752)
Q Consensus 173 ~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~~~P~-------~~~LLd~i 245 (752)
..++ ...+.+..+++..+... . ..++|+ ++.+.+.+
T Consensus 119 -----------------~~~~----~~~~ei~~~l~~~~~~~-~---------------~~ii~vSA~tG~GI~eL~~~L 161 (581)
T TIGR00475 119 -----------------EEIK----RTEMFMKQILNSYIFLK-N---------------AKIFKTSAKTGQGIGELKKEL 161 (581)
T ss_pred -----------------HHHH----HHHHHHHHHHHHhCCCC-C---------------CcEEEEeCCCCCCchhHHHHH
Confidence 0011 11123344444422110 0 012332 23344443
Q ss_pred HhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCC
Q 004467 246 IFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNY 325 (752)
Q Consensus 246 ~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~ 325 (752)
.+.++... ....++||.+.|..++..++.|. ++.|+|.+|+++.||+|.++|.+
T Consensus 162 ~~l~~~~~------------------------~~~~~~p~r~~Id~~f~v~G~Gt-Vv~G~v~~G~i~~Gd~l~i~P~~- 215 (581)
T TIGR00475 162 KNLLESLD------------------------IKRIQKPLRMAIDRAFKVKGAGT-VVTGTAFSGEVKVGDNLRLLPIN- 215 (581)
T ss_pred HHHHHhCC------------------------CcCcCCCcEEEEEEEEecCCcEE-EEEEEEecceEecCCEEEECCCC-
Confidence 33221110 00236799999999998888887 89999999999999999998643
Q ss_pred CCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEE--eccccccccce
Q 004467 326 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA 374 (752)
Q Consensus 326 ~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai--~Gl~~~~~~tg 374 (752)
. ..+|..|.. +..++++|.||+.++| .|++...++.|
T Consensus 216 ---~-----~~~Vr~iq~----~~~~v~~a~aG~rval~L~~i~~~~i~rG 254 (581)
T TIGR00475 216 ---H-----EVRVKAIQA----QNQDVEIAYAGQRIALNLMDVEPESLKRG 254 (581)
T ss_pred ---c-----eEEEeEEEE----CCccCCEEECCCEEEEEeCCCCHHHcCCc
Confidence 1 257887764 3467999999999987 46665545777
No 64
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.91 E-value=9.5e-25 Score=217.80 Aligned_cols=120 Identities=27% Similarity=0.395 Sum_probs=101.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
..||+++||+|||||||+++|++......+......+++|++++|++||+|++++...+.|. ++
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~----------------~~ 65 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA----------------NR 65 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCC----------------Ce
Confidence 36899999999999999999998754221110111257999999999999999998887764 78
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCH-HHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDE-SKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~-~~~inkld 154 (752)
+++|||||||.+|..++.++++.+|+|++|||+.+|+. .++.++++|. ++++||||
T Consensus 66 ~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D 129 (195)
T cd01884 66 HYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKAD 129 (195)
T ss_pred EEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCC
Confidence 99999999999999999999999999999999999876 6778899985 57789999
No 65
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.89 E-value=4.1e-23 Score=212.69 Aligned_cols=289 Identities=20% Similarity=0.293 Sum_probs=202.7
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccc-hhccccCC--
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDD-ALKSYKGE-- 92 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~-~~~~~~~~-- 92 (752)
....-+|+..||+|||||||+++|. +|-.+..+-+...++|-.++|.+||.|-+.+..-+.|.+... .++++...
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~Lv--tG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE 191 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLV--TGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE 191 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEE--ecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence 4456799999999999999999994 565554322234599999999999999998888888875322 34443222
Q ss_pred ----CCCCceEEEEEcCCCCcccHHHHHHHHH--hhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhhCCCCc
Q 004467 93 ----RNGNEYLINLIDSPGHVDFSSEVTAALR--ITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLWGENFF 159 (752)
Q Consensus 93 ----~~~~~~~inliDtPGh~df~~e~~~~l~--~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkldg~~~~ 159 (752)
.+..+..+.|+||-||..+...++++|- ..|+.+|||.|.+|++ ..+..+++|++++++|+|
T Consensus 192 ~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D----- 266 (527)
T COG5258 192 KAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKID----- 266 (527)
T ss_pred HhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecc-----
Confidence 1345689999999999999999999994 7899999999999998 566778999999999988
Q ss_pred chhhccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcC-CCCChhhHhhchHHHHHH----HHhcc
Q 004467 160 DPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLG-VTMKSEEKDLMGKALMKR----VMQTW 234 (752)
Q Consensus 160 ~~~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~-~~l~~~~~~~~~~~l~~~----~~~~~ 234 (752)
.... +. +..+ .+++..+|+..+ +.+.-.+. +...+.+ .-+.+
T Consensus 267 -----~~~d-----------------dr----~~~v----~~ei~~~Lk~v~Rip~~vk~~---~d~v~aa~a~k~~~~v 313 (527)
T COG5258 267 -----MVPD-----------------DR----FQGV----VEEISALLKRVGRIPLIVKDT---DDVVLAAKAMKAGRGV 313 (527)
T ss_pred -----cCcH-----------------HH----HHHH----HHHHHHHHHHhcccceeeecc---chhHHhhhhhhcCCce
Confidence 1100 00 1112 223444444322 11111100 1111111 11346
Q ss_pred ccc---------hHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEE
Q 004467 235 LPA---------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFG 305 (752)
Q Consensus 235 ~P~---------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~ 305 (752)
+|+ .-.+|+.+...+|... .| +.++||++||.|+|...+.|. ++.+
T Consensus 314 vPi~~tSsVTg~GldlL~e~f~~Lp~rr--------~~----------------~d~g~flmYId~iYsVtGVGt-VvsG 368 (527)
T COG5258 314 VPIFYTSSVTGEGLDLLDEFFLLLPKRR--------RW----------------DDEGPFLMYIDKIYSVTGVGT-VVSG 368 (527)
T ss_pred EEEEEEecccCccHHHHHHHHHhCCccc--------cc----------------CCCCCeEEEEEeeEEEeeeEE-EEee
Confidence 776 3467888888887541 01 467899999999999999998 8999
Q ss_pred EEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEE--eccccccccce-eecc
Q 004467 306 RVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTN 378 (752)
Q Consensus 306 RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai--~Gl~~~~~~tg-TL~~ 378 (752)
-|.||.|+.||+|++.| + +..++...+|+.|. .++..|++|.||+|+++ .|.+.-.+..| .|+.
T Consensus 369 sV~~G~l~~gd~vllGP-~----~~G~fr~v~vkSIe----mh~~rvdsa~aG~iig~Al~gv~~e~lerGMVl~~ 435 (527)
T COG5258 369 SVKSGILHVGDTVLLGP-F----KDGKFREVVVKSIE----MHHYRVDSAKAGSIIGIALKGVEKEELERGMVLSA 435 (527)
T ss_pred eEEeeeeccCCEEEEcc-C----CCCcEEEEEEEEEE----EeeEEeccccCCcEEEEEecccCHHHHhcceEecC
Confidence 99999999999998754 3 22346667888776 36678999999999876 47766434667 4443
No 66
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.89 E-value=1.3e-23 Score=177.85 Aligned_cols=80 Identities=55% Similarity=1.046 Sum_probs=76.4
Q ss_pred eeEEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhhcCchHHhhhhCCCceeeeeEecceeecC
Q 004467 636 EPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMS 715 (752)
Q Consensus 636 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 715 (752)
||||.|+|++|++++|+|+++|++|||+|++++..+++..+.|+|++|++|+|||+++||++|+|+|.|+++|+||++||
T Consensus 1 EPi~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~v~ 80 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQSVFDHWQIVP 80 (80)
T ss_pred CCEEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhhCCCceEEEEEeCeeeECc
Confidence 89999999999999999999999999999998887765568999999999999999999999999999999999999986
No 67
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=5.6e-23 Score=208.67 Aligned_cols=268 Identities=19% Similarity=0.286 Sum_probs=177.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
.--|++++||+|+|||||+.+|-. .|++...|.+++-+|||||.+.+...+.-..+.. ..++..
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~---------~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~par-------Lpq~e~ 69 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSE---------LGSTAAFDKHPQSTERGITLDLGFSTMTVLSPAR-------LPQGEQ 69 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHh---------hccchhhccCCcccccceeEeecceeeecccccc-------cCcccc
Confidence 347999999999999999999932 4556789999999999999999987776532111 123345
Q ss_pred eEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhhCCCCcchhhccccccC
Q 004467 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLWGENFFDPATKKWTTKN 170 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkldg~~~~~~~~~~~~~~~ 170 (752)
.+++|+|||||..++..++.|..+.|.+++|||++.|.+ .+.+.+....++++||+| .| +
T Consensus 70 lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid--~l-----------p 136 (522)
T KOG0461|consen 70 LQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKID--VL-----------P 136 (522)
T ss_pred ceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccc--cc-----------c
Confidence 789999999999999999999999999999999999998 334445555677788877 00 0
Q ss_pred CCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCC--hhhHhhchHHHHHHHHhcccc-chHHHHHHHHh
Q 004467 171 TGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMK--SEEKDLMGKALMKRVMQTWLP-ASSALLEMMIF 247 (752)
Q Consensus 171 ~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~--~~~~~~~~~~l~~~~~~~~~P-~~~~LLd~i~~ 247 (752)
.|+ + ...++.....+.+-|+..++.-. --++.... ..+-| .++.|-+.+..
T Consensus 137 E~q----r--------------~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~--------G~~~~~~i~eL~e~l~s 190 (522)
T KOG0461|consen 137 ENQ----R--------------ASKIEKSAKKVRKTLESTGFDGNSPIVEVSAAD--------GYFKEEMIQELKEALES 190 (522)
T ss_pred chh----h--------------hhHHHHHHHHHHHHHHhcCcCCCCceeEEecCC--------CccchhHHHHHHHHHHH
Confidence 000 0 00011222345566665443321 00110000 00000 12344444443
Q ss_pred cCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCC
Q 004467 248 HLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVP 327 (752)
Q Consensus 248 ~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~ 327 (752)
.+--|. .|+++||.++|...+...+.|. +..|.|.+|+++.|+.|.+..-|
T Consensus 191 ~if~P~-------------------------Rd~~gpflm~vDHCF~IKGQGT-V~TGTvl~G~~~ln~~iE~PAL~--- 241 (522)
T KOG0461|consen 191 RIFEPK-------------------------RDEEGPFLMAVDHCFAIKGQGT-VLTGTVLRGVLRLNTEIEFPALN--- 241 (522)
T ss_pred hhcCCC-------------------------cCCCCCeEEEeeeeEEeccCce-EEeeeEEEeEEecCcEEeecccc---
Confidence 332231 1678999999999999999998 89999999999999999874322
Q ss_pred CCcccceeeeeeeEEEEecCceeeeccccCCCEEEE--eccccccccceeeccC
Q 004467 328 GEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNATLTNE 379 (752)
Q Consensus 328 ~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai--~Gl~~~~~~tgTL~~~ 379 (752)
.+ .||+.+. ..+.+|.+|.+||-.++ +-.+.....+|..+.+
T Consensus 242 -e~-----rkVKslq----mf~~~vtsa~~GdR~g~cVtqFd~klleRgi~~~p 285 (522)
T KOG0461|consen 242 -EK-----RKVKSLQ----MFKQRVTSAAAGDRAGFCVTQFDEKLLERGICGPP 285 (522)
T ss_pred -hh-----hhhhhHH----HHhhhhhhhhcccceeeeeeccCHHHHhccccCCC
Confidence 11 3555433 34567999999998765 4555544555544433
No 68
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.86 E-value=1.1e-22 Score=207.50 Aligned_cols=118 Identities=33% Similarity=0.469 Sum_probs=103.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCcccc----------CCCc-----cccCCchhHhHhcceeccceEEEEEeeccch
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGDV-----RMTDTRADEAERGITIKSTGISLYYEMTDDA 85 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~----------~g~~-----~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~ 85 (752)
||+++||+|||||||+++|++.+|.+++.. .|+. +++|++++||+||+|++++...+.|.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~----- 75 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE----- 75 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC-----
Confidence 799999999999999999999999987642 2332 48999999999999999999999886
Q ss_pred hccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchh-------HH-------HHHHHhCC-CHHHHH
Q 004467 86 LKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VC-------MYASKFGV-DESKMM 150 (752)
Q Consensus 86 ~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~G-------v~-------~~~~~~~~-p~~~~i 150 (752)
++.++++|||||.+|..+++.+++.+|++|+|||+.+| +. .++..+++ |.++++
T Consensus 76 -----------~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivv 144 (219)
T cd01883 76 -----------KYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAV 144 (219)
T ss_pred -----------CeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEE
Confidence 79999999999999999999999999999999999984 32 44556775 566789
Q ss_pred HHhh
Q 004467 151 ERLW 154 (752)
Q Consensus 151 nkld 154 (752)
||||
T Consensus 145 NK~D 148 (219)
T cd01883 145 NKMD 148 (219)
T ss_pred Eccc
Confidence 9999
No 69
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=7.2e-21 Score=207.29 Aligned_cols=239 Identities=24% Similarity=0.295 Sum_probs=167.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
+...|+|+||||||||||++.+= ...+...++| |||.+.....+.+.. .+.
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR--~t~Va~~EaG--------------GITQhIGA~~v~~~~-------------~~~ 54 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIR--KTNVAAGEAG--------------GITQHIGAYQVPLDV-------------IKI 54 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHh--cCccccccCC--------------ceeeEeeeEEEEecc-------------CCC
Confidence 45679999999999999999993 3334444577 899999998888741 124
Q ss_pred eEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhhCCCCcchhhccccccC
Q 004467 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLWGENFFDPATKKWTTKN 170 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkldg~~~~~~~~~~~~~~~ 170 (752)
..|+|||||||.-|+.--.||.+++|.|+||||+.+|+. ..++.+++|.++.+||+|. ...
T Consensus 55 ~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk----------~~~-- 122 (509)
T COG0532 55 PGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDK----------PEA-- 122 (509)
T ss_pred ceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccC----------CCC--
Confidence 699999999999999999999999999999999999998 8889999999999999991 110
Q ss_pred CCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHHhccccc-------hHHHHH
Q 004467 171 TGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPA-------SSALLE 243 (752)
Q Consensus 171 ~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~~~P~-------~~~LLd 243 (752)
. ......-+... .+..+++.-+ ..++|+ +..||+
T Consensus 123 ---------------n-------------p~~v~~el~~~--gl~~E~~gg~---------v~~VpvSA~tg~Gi~eLL~ 163 (509)
T COG0532 123 ---------------N-------------PDKVKQELQEY--GLVPEEWGGD---------VIFVPVSAKTGEGIDELLE 163 (509)
T ss_pred ---------------C-------------HHHHHHHHHHc--CCCHhhcCCc---------eEEEEeeccCCCCHHHHHH
Confidence 0 01111111221 2223333111 245665 567777
Q ss_pred HHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccC
Q 004467 244 MMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGP 323 (752)
Q Consensus 244 ~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~ 323 (752)
++.-. ++.+.+ ..+++.|..+.|.-+.-+.+.|. ++.+=|+.|||+.||.+.+...
T Consensus 164 ~ill~------aev~el-----------------ka~~~~~a~gtviE~~~dkG~G~-vatviv~~GtL~~GD~iv~g~~ 219 (509)
T COG0532 164 LILLL------AEVLEL-----------------KANPEGPARGTVIEVKLDKGLGP-VATVIVQDGTLKKGDIIVAGGE 219 (509)
T ss_pred HHHHH------HHHHhh-----------------hcCCCCcceEEEEEEEeccCCCc-eEEEEEecCeEecCCEEEEccC
Confidence 77532 111111 11567888999988888888887 8999999999999999987531
Q ss_pred CCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce
Q 004467 324 NYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA 374 (752)
Q Consensus 324 n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~Gl~~~~~~tg 374 (752)
. .+|..+ .-....+++++.++--+-+.|++....-.+
T Consensus 220 ~-----------g~I~t~---v~~~~~~i~~a~ps~~v~i~g~~evp~Ag~ 256 (509)
T COG0532 220 Y-----------GRVRTM---VDDLGKPIKEAGPSKPVEILGLSEVPAAGD 256 (509)
T ss_pred C-----------CceEEe---ehhcCCCccccCCCCCeEEeccccccccCc
Confidence 1 244433 334456678888887777788777643333
No 70
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.85 E-value=4.4e-22 Score=201.49 Aligned_cols=118 Identities=24% Similarity=0.309 Sum_probs=102.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCC---------------CccccCCchhHhHhcceeccceEEEEEeeccch
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG---------------DVRMTDTRADEAERGITIKSTGISLYYEMTDDA 85 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g---------------~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~ 85 (752)
||+|+||+|||||||+++|++.+|.+.....| ..+++|+.++||+||+|++++...+.|.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~----- 75 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP----- 75 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC-----
Confidence 68999999999999999999999998742211 1468999999999999999999888885
Q ss_pred hccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCH-HHHHHHhh
Q 004467 86 LKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDE-SKMMERLW 154 (752)
Q Consensus 86 ~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~-~~~inkld 154 (752)
++.++|+|||||.+|..++..+++.+|++|+|||+.+|+. .++...++|. ++++||+|
T Consensus 76 -----------~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D 141 (208)
T cd04166 76 -----------KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMD 141 (208)
T ss_pred -----------CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchh
Confidence 7899999999999999999999999999999999999864 4555677765 45789999
No 71
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2.4e-20 Score=200.37 Aligned_cols=291 Identities=20% Similarity=0.294 Sum_probs=200.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+...|.|+||||||||||+|+|-... +.....| |||...+..+.... +
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~--VAA~E~G--------------GITQhIGAF~V~~p---------------~ 199 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSS--VAAGEAG--------------GITQHIGAFTVTLP---------------S 199 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCc--eehhhcC--------------CccceeceEEEecC---------------C
Confidence 356799999999999999999993322 2223366 89999999888776 3
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh--CCCCcchhhcccc
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW--GENFFDPATKKWT 167 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld--g~~~~~~~~~~~~ 167 (752)
+..|+|+|||||.-|..--.||++++|.+||||.|.+|+. ..++..++|+++.+||+| +++.
T Consensus 200 G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~p--------- 270 (683)
T KOG1145|consen 200 GKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANP--------- 270 (683)
T ss_pred CCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCH---------
Confidence 6899999999999999999999999999999999999997 788889999999999999 2221
Q ss_pred ccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHHhccccc-------hHH
Q 004467 168 TKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPA-------SSA 240 (752)
Q Consensus 168 ~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~~~P~-------~~~ 240 (752)
.+.+..++.. .-.++++|.+. ..+|+ .+.
T Consensus 271 ---------------------ekv~~eL~~~-----gi~~E~~GGdV------------------QvipiSAl~g~nl~~ 306 (683)
T KOG1145|consen 271 ---------------------EKVKRELLSQ-----GIVVEDLGGDV------------------QVIPISALTGENLDL 306 (683)
T ss_pred ---------------------HHHHHHHHHc-----CccHHHcCCce------------------eEEEeecccCCChHH
Confidence 1112211111 01123333332 12333 234
Q ss_pred HHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEE
Q 004467 241 LLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRI 320 (752)
Q Consensus 241 LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i 320 (752)
|.+++.-.. +. .+ ...++++|+-+.|.-...+++.|. ++.+=|-.|||++|+.|..
T Consensus 307 L~eaill~A----e~--------------md-----LkA~p~g~~eg~VIES~vdkg~G~-~aT~iVkrGTLkKG~vlV~ 362 (683)
T KOG1145|consen 307 LEEAILLLA----EV--------------MD-----LKADPKGPAEGWVIESSVDKGRGP-VATVIVKRGTLKKGSVLVA 362 (683)
T ss_pred HHHHHHHHH----HH--------------hh-----cccCCCCCceEEEEEeeecCCccc-eeEEEEeccccccccEEEE
Confidence 444443110 00 00 012578999999999888999998 8999999999999998864
Q ss_pred ccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEeccccccccceeeccCCCC------------------
Q 004467 321 MGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEV------------------ 382 (752)
Q Consensus 321 ~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~Gl~~~~~~tgTL~~~~~~------------------ 382 (752)
.- . . .||..++=.+| .++++|.||.-+.|.|.++.....+.+...++.
T Consensus 363 G~-------~--w--~KVr~l~D~nG---k~i~~A~Ps~pv~V~GwkdlP~aGD~vleVeSe~~Ar~~~~~R~~~~~~Ek 428 (683)
T KOG1145|consen 363 GK-------S--W--CKVRALFDHNG---KPIDEATPSQPVEVLGWKDLPIAGDEVLEVESEDRARKVLSKRKDESEQEK 428 (683)
T ss_pred ec-------h--h--hhhhhhhhcCC---CCccccCCCCceEeecccCCCCCCceEEEEecHHHHHHHHHHHHHHHHHHH
Confidence 21 1 0 36666655544 579999999999999999875443322111100
Q ss_pred ---------------------C-ccccc-----cccc-cCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEE
Q 004467 383 ---------------------D-AHPIR-----AMKF-SVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVC 429 (752)
Q Consensus 383 ---------------------~-~~~~~-----~~~~-~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v 429 (752)
. ..... .+.. ...|.|++-|.-...+..+.+.++|.-|..+.-.+++
T Consensus 429 ~~~~~e~~~~~~~~~~~~~~a~r~~~~~~~~~~~v~~~~~~~~~niIiK~DV~GS~EAv~d~L~tl~~~~v~l~~ 503 (683)
T KOG1145|consen 429 ISRDLEDIEEQREEAAEALLAKREEGENIGRKTRVELHEQNPLFNIIIKCDVQGSAEAVLDALSTLNSEQVKLNV 503 (683)
T ss_pred HHhHHHHHHHHHHHHHHHHHhhhhhhhccccceecccccCCcceEEEEEecccchHHHHHHHHhhcCCCceEEEE
Confidence 0 00000 0111 1368999999999999999999999988755555544
No 72
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=99.84 E-value=2.2e-21 Score=168.18 Aligned_cols=85 Identities=38% Similarity=0.529 Sum_probs=79.3
Q ss_pred eEEeeEEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhhcCchHHhhhhCCCceeeeeEeccee
Q 004467 633 RLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWD 712 (752)
Q Consensus 633 ~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~ 712 (752)
+||||||+++|.+|++++|+|+++|++|||+|+++... +++.+.|+|.+|+++++||.++||++|+|+|.|+++|+||+
T Consensus 1 ~LlEP~~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~-~~~~~~i~~~iP~~~~~gf~~~Lr~~T~G~a~~~~~~~~y~ 79 (89)
T PF00679_consen 1 VLLEPIMSVEISVPEEYLGKVISDLSKRRGEILSMDPI-GGDRVVIEAEIPVRELFGFRSELRSLTSGRASFSMEFSGYR 79 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEE-STTEEEEEEEEEGGGHTTHHHHHHHHTTTS-EEEEEEEEEE
T ss_pred CEECCEEEEEEEECHHHHHHHHHHhcccccEEEechhh-hhhheeEEEEEChhhhhhHHHHhhccCCCEEEEEEEECeeE
Confidence 58999999999999999999999999999999999887 44799999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 004467 713 MMSSDP 718 (752)
Q Consensus 713 ~v~~d~ 718 (752)
++++++
T Consensus 80 ~~~~~~ 85 (89)
T PF00679_consen 80 PVPGDI 85 (89)
T ss_dssp EESHHH
T ss_pred ECCCCh
Confidence 999875
No 73
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.84 E-value=2.3e-21 Score=166.67 Aligned_cols=83 Identities=36% Similarity=0.558 Sum_probs=78.0
Q ss_pred EEeeEEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhhcCchHHhhhhCCCceeeeeEecceee
Q 004467 634 LLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDM 713 (752)
Q Consensus 634 LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~ 713 (752)
||||||.++|.||++++|.|+++|++|||+|.+++... +.+.|+|++|+++++||.++||++|+|+|+|+++|+||++
T Consensus 1 llEPi~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~~--~~~~i~~~iP~~~~~~~~~~Lrs~T~G~~~~~~~f~~y~~ 78 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRG--GAQVIKAKVPLSEMFGYATDLRSATQGRATWSMEFSHYEE 78 (85)
T ss_pred CcCCEEEEEEEeCHHHHHHHHHHHHHcCCEEECeeccC--CcEEEEEECCHHHHhchHHHHHHhcCCeEEEEEEeCcceE
Confidence 68999999999999999999999999999999888643 5789999999999999999999999999999999999999
Q ss_pred cCCCC
Q 004467 714 MSSDP 718 (752)
Q Consensus 714 v~~d~ 718 (752)
+|+++
T Consensus 79 ~~~~~ 83 (85)
T smart00838 79 VPKSI 83 (85)
T ss_pred CChhh
Confidence 99764
No 74
>PF03764 EFG_IV: Elongation factor G, domain IV; InterPro: IPR005517 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3J0E_H 1FNM_A 3IZP_E 2OM7_L 1KTV_A 2J7K_A 2BM1_A 2BM0_A 2BV3_A 1ZM3_E ....
Probab=99.83 E-value=8.4e-21 Score=174.68 Aligned_cols=98 Identities=27% Similarity=0.360 Sum_probs=88.0
Q ss_pred hcCCchhccCcEEEeccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCcCCCCeeeeEEEEEeeeecccccccC
Q 004467 532 EFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRG 611 (752)
Q Consensus 532 ~~~~~~~~~~~v~~~~P~~~~~n~~~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~d~~~~~ 611 (752)
++||+..+++.+|.++|...++|+|++.+.+.+++++++++|++||++|+++|||+|+||+||+|+|.|+.+|. .++.
T Consensus 23 ~~g~~~~~a~v~~~~~P~~~~~~~~~~~~~~~~l~~~~~~ai~~G~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s~ 100 (120)
T PF03764_consen 23 QYGGKRQFAKVILRVEPLEGGGNIFVDETEGGQLPKEFQDAIEEGFQSALSSGPLCGYPVTDVKVTLTDGEYHE--VDSS 100 (120)
T ss_dssp ECTSSEEEEEEEEEEEETSTSSEEEEESSSTTSSGGGGHHHHHHHHHHHHCSSTTTSSEB-SEEEEEEEEEC-T--TTBS
T ss_pred HhCCCCceEEEEEEEeecccCCceeeeccccccccHHHHHHHhhhhhheecccccCCCceEEEEEEEEEeeecC--CcCC
Confidence 57888888999999999887799999999999999999999999999999999999999999999999999996 4455
Q ss_pred CCchHHHHHHHHHHHHHhCC
Q 004467 612 GGQVIPTARRVIYASQLTAK 631 (752)
Q Consensus 612 ~~~~~~a~~~a~~~a~~~a~ 631 (752)
..+|++|+++||++||++|+
T Consensus 101 ~~a~~~aa~~a~~~al~~A~ 120 (120)
T PF03764_consen 101 PGAFRAAARRAFREALKKAG 120 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 67899999999999999985
No 75
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.83 E-value=6.2e-20 Score=210.98 Aligned_cols=283 Identities=21% Similarity=0.221 Sum_probs=154.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeecc----chhccccCCC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD----DALKSYKGER 93 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~----~~~~~~~~~~ 93 (752)
+...|+|+||+|||||||+++|......... .| |+|.+.+...+.+.... .....+. .
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~--~g--------------~itq~ig~~~~~~~~~~~~~~~~~~~~~--~ 66 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKE--AG--------------GITQHIGATEVPIDVIEKIAGPLKKPLP--I 66 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCC--CC--------------ceEEeeceeeccccccccccceeccccc--c
Confidence 4457999999999999999999533211111 22 34433332222221000 0000000 0
Q ss_pred CCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhhCCCCcchhhccc
Q 004467 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLWGENFFDPATKKW 166 (752)
Q Consensus 94 ~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkldg~~~~~~~~~~~ 166 (752)
+.+-..++|+|||||.+|...+.++++.+|++++|+|+..|+. .++...++|.++++||+|.... |
T Consensus 67 ~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~-------~ 139 (586)
T PRK04004 67 KLKIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPG-------W 139 (586)
T ss_pred ccccCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchh-------h
Confidence 0000137999999999999999999999999999999999865 5566789999999999994211 1
Q ss_pred cccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHHhccccc-------hH
Q 004467 167 TTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPA-------SS 239 (752)
Q Consensus 167 ~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~~~P~-------~~ 239 (752)
... ....|..-....... ....++..-..+..+|...|+. .+.+.. .+.+.. .-.++|+ ++
T Consensus 140 ~~~------~~~~~~e~~~~~~~~-v~~~f~~~l~ev~~~L~~~g~~--~e~~~~-~~~~~~--~v~ivpiSA~tGeGi~ 207 (586)
T PRK04004 140 KST------EDAPFLESIEKQSQR-VQQELEEKLYELIGQLSELGFS--ADRFDR-VKDFTK--TVAIVPVSAKTGEGIP 207 (586)
T ss_pred hhh------cCchHHHHHhhhhHH-HHHHHHHHHHHHHHHHHhcCCC--hhhhhh-hhccCC--CceEeeccCCCCCChH
Confidence 110 000000000000000 0111111111233344443332 221100 000000 0134554 34
Q ss_pred HHHHHHHh----cCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCC
Q 004467 240 ALLEMMIF----HLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTG 315 (752)
Q Consensus 240 ~LLd~i~~----~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~G 315 (752)
.|++.+.. ++|.+.. .+++.|+.+.|++++.+++.|. +++++|++|+|++|
T Consensus 208 dLl~~i~~~~~~~l~~~l~------------------------~~~~~~~~~~V~ev~~~~g~G~-v~~~~v~~GtL~~G 262 (586)
T PRK04004 208 DLLMVLAGLAQRYLEERLK------------------------IDVEGPGKGTVLEVKEERGLGT-TIDVILYDGTLRKG 262 (586)
T ss_pred HHHHHHHHHHHHHHHHhhc------------------------cCCCCCeEEEEEEEEEeCCCce-EEEEEEEcCEEECC
Confidence 56655532 2222210 1467899999999999888887 99999999999999
Q ss_pred CEEEEccCCCCCCCcccceeeeeeeEEEEe--------cCceeeeccccCCCEEEE--eccccc
Q 004467 316 LKVRIMGPNYVPGEKKDLYVKSVQRTVIWM--------GKKQETVEDVPCGNTVAM--VGLDQF 369 (752)
Q Consensus 316 d~v~i~~~n~~~~~~~~~~~~kv~~l~~~~--------g~~~~~V~ea~AGdIvai--~Gl~~~ 369 (752)
|.|.+.+.+ + ....+|..|.... ++....+++|.|..-+-+ .|++..
T Consensus 263 d~vv~~~~~---~----~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~~ 319 (586)
T PRK04004 263 DTIVVGGKD---G----PIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLEDA 319 (586)
T ss_pred CEEEECcCC---C----cceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCcccc
Confidence 999876432 1 0114777776542 123345666666554444 366654
No 76
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.83 E-value=8.9e-21 Score=192.77 Aligned_cols=125 Identities=42% Similarity=0.645 Sum_probs=107.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCcc---ccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ---EVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~---~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
|||+|+||+|||||||+++|++.++.+.+ ...+..+++|.+++|++||+|+.+....+.|.. .+++
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~-----------~~~~ 69 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPD-----------SKGK 69 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEc-----------CCCC
Confidence 89999999999999999999999998864 223445789999999999999999999998862 1234
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhhC
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLWG 155 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkldg 155 (752)
.+.++++|||||.+|..++.++++.+|++|+|+|+.+|.. ..+...++|.++++||+|.
T Consensus 70 ~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~ 135 (213)
T cd04167 70 SYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDR 135 (213)
T ss_pred EEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 6899999999999999999999999999999999998864 3344568999999999993
No 77
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.82 E-value=8.3e-21 Score=161.35 Aligned_cols=80 Identities=66% Similarity=1.192 Sum_probs=76.2
Q ss_pred eeEEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhhcCchHHhhhhCCCceeeeeEecceeecC
Q 004467 636 EPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMS 715 (752)
Q Consensus 636 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 715 (752)
||||+|+|++|++++|+|+++|++|||.|++++..++++.+.|+|++|++|++||.++||++|+|+|+|+++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 80 (80)
T cd04096 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSATSGQAFPQLVFSHWEIVP 80 (80)
T ss_pred CCEEEEEEEEcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHhhCCCCcEEEEEeceeEECc
Confidence 89999999999999999999999999999998876655678999999999999999999999999999999999999986
No 78
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.82 E-value=1.4e-20 Score=158.95 Aligned_cols=78 Identities=26% Similarity=0.519 Sum_probs=74.5
Q ss_pred eeEEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhhcCchHHhhhhCCCceeeeeEecceeecC
Q 004467 636 EPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMS 715 (752)
Q Consensus 636 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 715 (752)
||||+++|+||++++|+|+++|++|||+|.+++..+ +.+.|+|++|++|+|||.++||++|+|+|+|+++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~~~~P~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGE--DEFTLEAEVPLNDMFGYSTELRSMTQGKGEFSMEFSRYAPVP 78 (78)
T ss_pred CCEEEEEEEecHHHHHHHHHHHHHCCCEEeceEecC--CeEEEEEEECHHHhhChHHHHHhhCCCcEEEEEEecceEECc
Confidence 899999999999999999999999999999988654 578999999999999999999999999999999999999986
No 79
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.81 E-value=2.1e-20 Score=157.94 Aligned_cols=78 Identities=21% Similarity=0.301 Sum_probs=74.2
Q ss_pred eeEEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhhcCchHHhhhhCCCceeeeeEecceeecC
Q 004467 636 EPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMS 715 (752)
Q Consensus 636 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 715 (752)
||||+++|+||++++|+|+++|++|||+|.+++..+ +.+.|+|++|++++|||+++||++|+|+|+|+++|+||++|+
T Consensus 1 EPi~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~~~~P~~~~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQIKG--DEVTLEGTIPVATSQDYQSELPSYTHGEGVLETEFKGYRPCH 78 (78)
T ss_pred CCeEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEecC--CEEEEEEEECHHHHhhHHHHhHhhcCCeEEEEEEeCCeEECC
Confidence 899999999999999999999999999999887654 589999999999999999999999999999999999999984
No 80
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=99.80 E-value=4.4e-20 Score=156.16 Aligned_cols=78 Identities=32% Similarity=0.566 Sum_probs=74.4
Q ss_pred eeEEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhhcCchHHhhhhCCCceeeeeEecceeecC
Q 004467 636 EPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMS 715 (752)
Q Consensus 636 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 715 (752)
||||+|+|+||++++|+|+++|++|||+|++++... +.+.|+|++|++|++||.++||++|+|+|+++++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~~~iP~~e~~~~~~~Lr~~T~G~a~~~~~f~~y~~~~ 78 (78)
T cd03713 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQILGTESRG--GWKVIKAEVPLAEMFGYSTDLRSLTQGRGSFTMEFSHYEEVP 78 (78)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHHcCCceEceeccC--CcEEEEEEcCHHHHhChHHHHHhhcCCeEEEEEEecceeECc
Confidence 899999999999999999999999999999988653 578999999999999999999999999999999999999986
No 81
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.79 E-value=1.7e-19 Score=152.60 Aligned_cols=78 Identities=21% Similarity=0.379 Sum_probs=73.7
Q ss_pred eeEEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhhcCchHHhhhhCCCceeeeeEecceeec
Q 004467 636 EPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMM 714 (752)
Q Consensus 636 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v 714 (752)
||||+++|.||++++|+|+++|++|||+|.+++..+ ++.+.|+|.+|+++++||.++||++|+|+|+|+++|+||++.
T Consensus 1 EPi~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~-~~~~~i~~~~P~~~~~~~~~~Lrs~T~G~a~~~~~f~~y~~~ 78 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDG-NGRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNHVFDGYEPY 78 (79)
T ss_pred CCEEEEEEEeCchhhHHHHHHHHhCCCEEEccEECC-CCEEEEEEEECHHHHcCcHHHHHhhCCCeEEEEEEecccEec
Confidence 899999999999999999999999999999988754 257899999999999999999999999999999999999975
No 82
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.78 E-value=5e-19 Score=177.22 Aligned_cols=121 Identities=38% Similarity=0.648 Sum_probs=104.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
++|||+++||.++|||||+++|++..|.+.....-..+.+|+.+.|+++|+|+......+.|. .
T Consensus 1 ~~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~----------------~ 64 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYK----------------D 64 (194)
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEEC----------------C
Confidence 489999999999999999999998877665532112367999999999999999988888875 7
Q ss_pred eEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
+.++|+|||||.+|...+...++.+|++++|+|+.+|.. ..+...++|.++++||+|
T Consensus 65 ~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D 128 (194)
T cd01891 65 TKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKID 128 (194)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 899999999999999999999999999999999998753 334457899999999999
No 83
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=99.78 E-value=1.8e-19 Score=152.89 Aligned_cols=79 Identities=38% Similarity=0.590 Sum_probs=75.1
Q ss_pred eeEEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhhcCchHHhhhhCCCceeeeeEecceeecC
Q 004467 636 EPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMS 715 (752)
Q Consensus 636 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 715 (752)
||||.++|++|++++|+|+++|++|||+|.+++..+ ++.+.|+|++|++|++||.++||++|+|+|+++++|+||++++
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~~-~~~~~i~~~iP~~e~~g~~~~lr~~T~G~~~~~~~f~~y~~~~ 79 (79)
T cd01514 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRG-TGRVVIKAELPLAEMFGFATDLRSLTQGRASFSMEFSHYEPVP 79 (79)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHhcCCeeEeeEecC-CCeEEEEEECCHHHHcCcHHHhhhhcCCeEEEEEEecceEeCc
Confidence 899999999999999999999999999999988754 3689999999999999999999999999999999999999985
No 84
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.78 E-value=2.8e-19 Score=149.09 Aligned_cols=73 Identities=41% Similarity=0.665 Sum_probs=68.2
Q ss_pred CCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEc-CCCcEEEEecchhhHHHHHHHHHhhcCCCcEEEEeC
Q 004467 394 VSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSD 468 (752)
Q Consensus 394 ~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~-etge~il~g~GelhLei~~~rL~~~f~~~vev~~s~ 468 (752)
|+|+++++|+|.++.|.++|.+||++|.+|||+|++.++ +|||++|+||||+||||+++||+++| |+++++++
T Consensus 2 p~Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~--~v~v~~~~ 75 (75)
T PF14492_consen 2 PPPVLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRF--GVEVEFGK 75 (75)
T ss_dssp SS-SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTT--CEBEEEE-
T ss_pred CCCeEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHH--CCeeEecC
Confidence 399999999999999999999999999999999999987 89999999999999999999999999 99999974
No 85
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.77 E-value=5.8e-18 Score=193.84 Aligned_cols=121 Identities=22% Similarity=0.229 Sum_probs=82.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccC--CCCCC
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG--ERNGN 96 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~--~~~~~ 96 (752)
...|+|+||+|||||||+++|....-... ...|+|.+.....+.+............ ..+.+
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~----------------e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~ 67 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKR----------------EAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLK 67 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccc----------------cCCceecccCeeEeeeccccccccccccccccccc
Confidence 34799999999999999999964422111 1235666555544444310000000000 00011
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhhC
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLWG 155 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkldg 155 (752)
...++|+|||||.+|.....++++.+|++++|+|+.+|+. .++...++|.++++||+|.
T Consensus 68 ~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl 133 (590)
T TIGR00491 68 IPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDR 133 (590)
T ss_pred cCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCc
Confidence 1248999999999999999999999999999999998754 4556779999999999993
No 86
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.76 E-value=8.3e-19 Score=148.63 Aligned_cols=78 Identities=21% Similarity=0.260 Sum_probs=73.0
Q ss_pred eeEEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhh-cCchHHhhhhCCCceeeeeEecceeec
Q 004467 636 EPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES-FGFSGTLRAATSGQAFPQCVFDHWDMM 714 (752)
Q Consensus 636 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~v 714 (752)
|||++++|.||++++|+|+++|++|||+|++++..++ +.+.|+|.+|++++ +||.++||++|+|+|+|+++|+||++.
T Consensus 1 EPi~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~~~-~~~~i~~~~P~~~~~~g~~~~L~s~T~G~g~~~~~f~~y~~~ 79 (80)
T cd03709 1 EPFVKATIITPSEYLGAIMELCQERRGVQKDMEYLDA-NRVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYRES 79 (80)
T ss_pred CCEEEEEEEeCHHhhHHHHHHHHHhCCEEeccEecCC-CeEEEEEECCHHHHhhhHHHHhHhhcCCEEEEEEEecccccC
Confidence 8999999999999999999999999999999886542 37899999999999 599999999999999999999999975
No 87
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.74 E-value=3e-18 Score=168.88 Aligned_cols=123 Identities=43% Similarity=0.698 Sum_probs=104.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
|||+++||+|+|||||+++|+...|.+.+.. ....++|+.+.|++||+|..+..+.+.|.. .+++++.
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~-----------~~~~~~~ 68 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKRE-MKEQVLDSMDLERERGITIKAQTVRLNYKA-----------KDGQEYL 68 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCC-CceEeccCChhHHHCCCeEecceEEEEEec-----------CCCCcEE
Confidence 8999999999999999999999998876531 224689999999999999999888887741 0234788
Q ss_pred EEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
++|+|||||.+|...+.++++.+|++|+|+|+..+.. ..+...++|.++++||+|
T Consensus 69 ~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~D 130 (179)
T cd01890 69 LNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKID 130 (179)
T ss_pred EEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCC
Confidence 9999999999999999999999999999999998753 333456899999999998
No 88
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.72 E-value=2.3e-18 Score=173.59 Aligned_cols=122 Identities=26% Similarity=0.287 Sum_probs=93.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccc----hh-------cc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDD----AL-------KS 88 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~----~~-------~~ 88 (752)
+|||++||+|||||||+++| .| ..+|+.+.|++||+|+..+...+.|....+ .. +.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l-----------~~--~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKAL-----------SG--VWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDS 67 (203)
T ss_pred CEEEEECCCCCCHHHHHHHH-----------hC--CCCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccccc
Confidence 59999999999999999999 33 347999999999999999999988751100 00 00
Q ss_pred ccCC------CCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchh-HH-------HHHHHhCCC-HHHHHHHh
Q 004467 89 YKGE------RNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VC-------MYASKFGVD-ESKMMERL 153 (752)
Q Consensus 89 ~~~~------~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~G-v~-------~~~~~~~~p-~~~~inkl 153 (752)
.... .....++++|+|||||.+|..++.++++.+|++++|||+.++ +. ..+...+++ .++++||+
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~ 147 (203)
T cd01888 68 PECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKI 147 (203)
T ss_pred ccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEch
Confidence 0000 011238999999999999999999999999999999999974 22 344556764 67788999
Q ss_pred h
Q 004467 154 W 154 (752)
Q Consensus 154 d 154 (752)
|
T Consensus 148 D 148 (203)
T cd01888 148 D 148 (203)
T ss_pred h
Confidence 8
No 89
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.71 E-value=2.3e-17 Score=164.90 Aligned_cols=123 Identities=25% Similarity=0.371 Sum_probs=98.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
||+++||+|+|||||+++|+...+ ...+|...+|++||+|+.....++.|..... .+.....+++++.+
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~---------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 70 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIAS---------TAAFDKNPQSQERGITLDLGFSSFYVDKPKH--LRELINPGEENLQI 70 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccc---------hhhhccCHHHHHcCCeeeecceEEEeccccc--ccccccccccCceE
Confidence 899999999999999999975421 3468999999999999999998888852110 00001123347899
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
+++|||||.+|..++..+++.+|++++|+|+.+|.. .++...++|.++++||+|
T Consensus 71 ~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~D 131 (192)
T cd01889 71 TLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKID 131 (192)
T ss_pred EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 999999999999999999999999999999998764 334556889899999998
No 90
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.70 E-value=6e-18 Score=172.55 Aligned_cols=130 Identities=22% Similarity=0.250 Sum_probs=100.7
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCCccccCCC-ccccCCchhHhHhcceeccceEEEEEeeccchhcccc--------CC
Q 004467 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYK--------GE 92 (752)
Q Consensus 22 i~iighvd~GKTTL~~~ll~~~g~i~~~~~g~-~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~--------~~ 92 (752)
|+++||+++|||||+++|.. +..+.. .|. ...+|.+.+|++||+|+..+...+.|.+.+..++... ..
T Consensus 2 v~~~G~~~~GKttl~~~~~~--~~~~~~-~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 78 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQ--GELDNG-RGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEI 78 (224)
T ss_pred EEEECCCCCCHHHHHHHHHh--CCcCCC-CCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCcccccccee
Confidence 78999999999999999964 434332 232 3579999999999999877665565554332211100 11
Q ss_pred CCCCceEEEEEcCCCCcccHHHHHHHHH--hhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 93 RNGNEYLINLIDSPGHVDFSSEVTAALR--ITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 93 ~~~~~~~inliDtPGh~df~~e~~~~l~--~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
.+.+++.++|||||||.+|..++.+++. .+|++++|||+.+|+. .++..+++|.++++||+|
T Consensus 79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D 149 (224)
T cd04165 79 CEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKID 149 (224)
T ss_pred eeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 1234689999999999999999999996 8999999999998866 777889999999999999
No 91
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.66 E-value=6e-16 Score=135.60 Aligned_cols=94 Identities=37% Similarity=0.679 Sum_probs=80.6
Q ss_pred eEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEe
Q 004467 285 LMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 364 (752)
Q Consensus 285 l~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~ 364 (752)
++++|||+..+++.|++++|+|||||+|++||.|++++++++.+..++...+++.+||.++|.+..++++|.|||||++.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 57899999999887666999999999999999999886554433223345589999999999999999999999999999
Q ss_pred ccccccccceeecc
Q 004467 365 GLDQFITKNATLTN 378 (752)
Q Consensus 365 Gl~~~~~~tgTL~~ 378 (752)
|+++.+++.+|+++
T Consensus 81 gl~~~~~~~~t~~~ 94 (94)
T cd04090 81 GIDSSIVKTATITS 94 (94)
T ss_pred CcchheeceEEecC
Confidence 99999888888874
No 92
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=99.65 E-value=1.5e-15 Score=138.01 Aligned_cols=112 Identities=12% Similarity=0.055 Sum_probs=86.8
Q ss_pred EEEEeecccccceeEEeecCCC--ceEEEEEEEeCChhhHHHHHcCCCCCCCChHHHHHHhhhhcCCchhccCcEEEecc
Q 004467 471 VSFRETVLEKSCRTVMSKSPNK--HNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGP 548 (752)
Q Consensus 471 V~yrETi~~~~~~~~~~~~~~~--~~~i~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~P 548 (752)
|+|||||+++++...+.+.... +.+++++++|++.+
T Consensus 1 VaYRETI~~~~~~~~~~~~~~~~~~a~v~l~veP~~~g------------------------------------------ 38 (115)
T cd01684 1 VIYKERPLGTGEGVEHIEVPPNPFWATVGLRVEPLPRG------------------------------------------ 38 (115)
T ss_pred CceEEEeCCcEEEEEEEccCCCcEEEEEEEEEEECCCC------------------------------------------
Confidence 6899999998654333333333 45566666665321
Q ss_pred CCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCcCCCCeeeeEEEEEeeeecc-cccccCCCchHHHHHHHHHHHH
Q 004467 549 ETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQ 627 (752)
Q Consensus 549 ~~~~~n~~~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-d~~~~~~~~~~~a~~~a~~~a~ 627 (752)
..+.|.+.+.+..+++++.++|++||+.|+++||| |+||.||+|+|.|+.+|. ||+.. .|+.|+++|+++|+
T Consensus 39 ---~g~~f~~~~~~~~ip~~~~~aie~g~~~al~~G~l-G~pv~dv~V~l~~~~~h~~~ss~~---af~~Aa~~a~~~a~ 111 (115)
T cd01684 39 ---SGLQYESEVSLGSLPRSFQNAVEETVRETLQQGLY-GWEVTDCKVTLTYGRYHSPVSTAA---DFRELTPRVLRQAL 111 (115)
T ss_pred ---CCcEEEEEecCCcCCHHHHHHHHHHHHHHHhcCCC-CCCEeeEEEEEEEeeecCCCCCHH---HHHHHHHHHHHHHH
Confidence 23667777778889999999999999999999999 999999999999999997 54443 46789999999999
Q ss_pred HhCC
Q 004467 628 LTAK 631 (752)
Q Consensus 628 ~~a~ 631 (752)
.+|+
T Consensus 112 ~~a~ 115 (115)
T cd01684 112 KKAG 115 (115)
T ss_pred HhcC
Confidence 9874
No 93
>cd01680 EFG_like_IV Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.62 E-value=3.7e-15 Score=136.26 Aligned_cols=77 Identities=22% Similarity=0.191 Sum_probs=67.8
Q ss_pred CceEEecccCccchHHHHHHHHHHHHHHHHcCCcCCCCeeeeEEEEEeeeecccccccCCCchHHHHHHHHHHHHHhCC
Q 004467 553 PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAK 631 (752)
Q Consensus 553 ~n~~~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~d~~~~~~~~~~~a~~~a~~~a~~~a~ 631 (752)
+|.|++.+.+..++++++++|++||++|+++|||||+||+|++|+|.++.+|.+ +....+|++|+++||++||.+|+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~--~~~~~~~~~aa~~a~~~al~~a~ 116 (116)
T cd01680 40 GVRVVDPVDEELLPAELKEAVEEGIRDACASGPLTGYPLTDVRVTVLDVPYHEG--VSTEAGFRAAAGRAFESAAQKAG 116 (116)
T ss_pred CcEEEEecCCCcCCHHHHHHHHHHHHHHHhcCcccCCceeeEEEEEEEEEecCC--CCCHHHHHHHHHHHHHHHHHhcC
Confidence 467777777778899999999999999999999999999999999999999863 33456889999999999998874
No 94
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=3.7e-16 Score=156.96 Aligned_cols=252 Identities=20% Similarity=0.268 Sum_probs=156.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEE-Eeeccch------h---
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLY-YEMTDDA------L--- 86 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~-~~~~~~~------~--- 86 (752)
..+.||+-+|||-|||||++.++ .|- .+=..+.|-||.|||+....... |++.++. .
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAi-----------SGv--~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~ 102 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAI-----------SGV--HTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSF 102 (466)
T ss_pred eeeeeecceeccccCcceeeeee-----------ccc--eEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhcc
Confidence 34789999999999999999888 441 23345678999999999877653 4443211 0
Q ss_pred -----ccccCCCCCC------ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH--------HHHHHhCCCH-
Q 004467 87 -----KSYKGERNGN------EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--------MYASKFGVDE- 146 (752)
Q Consensus 87 -----~~~~~~~~~~------~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~--------~~~~~~~~p~- 146 (752)
.++..+.-+. -+++.|+|||||.-+...|..++.++|+|+|+|.+.|.-. ...+-+.+..
T Consensus 103 gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhi 182 (466)
T KOG0466|consen 103 GSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHI 182 (466)
T ss_pred CCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceE
Confidence 0111111111 1478999999999999999999999999999999998633 2223344443
Q ss_pred HHHHHHhhCCCCcchhhccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHH
Q 004467 147 SKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKAL 226 (752)
Q Consensus 147 ~~~inkldg~~~~~~~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l 226 (752)
+++.||+| -+-+..+.+..+.+.+|+.....+-
T Consensus 183 iilQNKiD-----------------------------------li~e~~A~eq~e~I~kFi~~t~ae~------------ 215 (466)
T KOG0466|consen 183 IILQNKID-----------------------------------LIKESQALEQHEQIQKFIQGTVAEG------------ 215 (466)
T ss_pred EEEechhh-----------------------------------hhhHHHHHHHHHHHHHHHhccccCC------------
Confidence 34457766 0111222233455666665421110
Q ss_pred HHHHHhccccc-------hHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeec----
Q 004467 227 MKRVMQTWLPA-------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPA---- 295 (752)
Q Consensus 227 ~~~~~~~~~P~-------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~---- 295 (752)
..++|+ ++.+.|.|++.+|-|.. |-..|..+.|.+.|..
T Consensus 216 -----aPiiPisAQlkyNId~v~eyivkkIPvPvR-------------------------df~s~prlIVIRSFDVNkPG 265 (466)
T KOG0466|consen 216 -----APIIPISAQLKYNIDVVCEYIVKKIPVPVR-------------------------DFTSPPRLIVIRSFDVNKPG 265 (466)
T ss_pred -----CceeeehhhhccChHHHHHHHHhcCCCCcc-------------------------ccCCCCcEEEEEeeccCCCC
Confidence 012443 57889999999998842 2223444455544432
Q ss_pred ----CCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCccccee----eeeeeEEEEecCceeeeccccCCCEEEE
Q 004467 296 ----SDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYV----KSVQRTVIWMGKKQETVEDVPCGNTVAM 363 (752)
Q Consensus 296 ----~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~----~kv~~l~~~~g~~~~~V~ea~AGdIvai 363 (752)
.-+|+ ++-+-+..|.|+.||.+.+.|.-.+.+....+.- .+|..|| .++.+++.|.+|-.+++
T Consensus 266 ~ev~~lkGg-vaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~----AE~n~L~~AvPGGLIGV 336 (466)
T KOG0466|consen 266 SEVDDLKGG-VAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLF----AEQNDLQFAVPGGLIGV 336 (466)
T ss_pred chhhcccCc-cccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHH----hhhccceeecCCceeee
Confidence 22455 8889999999999999998654222111111110 1333333 25567888999987776
No 95
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.60 E-value=4.8e-15 Score=127.21 Aligned_cols=83 Identities=20% Similarity=0.278 Sum_probs=73.0
Q ss_pred CCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEE
Q 004467 282 NGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTV 361 (752)
Q Consensus 282 ~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIv 361 (752)
++||+++|||+..+++.|+ ++|+|||||+|++||.|++.. .. .+++.+||.++|.+..++++|.|||||
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~-la~~RV~sG~l~~g~~v~~~~-----~~-----~~~v~~l~~~~g~~~~~v~~~~aGdI~ 69 (85)
T cd03690 1 ESELSGTVFKIERDDKGER-LAYLRLYSGTLRLRDSVRVNR-----EE-----KIKITELRVFNNGEVVTADTVTAGDIA 69 (85)
T ss_pred CCCcEEEEEEeEECCCCCe-EEEEEEccCEEcCCCEEEeCC-----Cc-----EEEeceeEEEeCCCeEECcEECCCCEE
Confidence 3789999999999999887 999999999999999998532 11 269999999999999999999999999
Q ss_pred EEeccccccccce-eec
Q 004467 362 AMVGLDQFITKNA-TLT 377 (752)
Q Consensus 362 ai~Gl~~~~~~tg-TL~ 377 (752)
++.|++++ .+| ||+
T Consensus 70 ai~gl~~~--~~Gdtl~ 84 (85)
T cd03690 70 ILTGLKGL--RVGDVLG 84 (85)
T ss_pred EEECCCCC--cCccccC
Confidence 99999987 556 664
No 96
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.58 E-value=2.8e-14 Score=170.88 Aligned_cols=284 Identities=18% Similarity=0.192 Sum_probs=158.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccC--CCCCCc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG--ERNGNE 97 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~--~~~~~~ 97 (752)
-|+..-|-+.| ||||+++|-..+ + +++..+|||.+.+...+.+....+....... ..+.+.
T Consensus 463 ~~~~~~~~~~~-KTtLLD~iR~t~--v--------------~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~ 525 (1049)
T PRK14845 463 HNFIANGILVH-NTTLLDKIRKTR--V--------------AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKI 525 (1049)
T ss_pred Ccceeeeeecc-cccHHHHHhCCC--c--------------ccccCCCceeccceEEEEecccccccccccccccccCCc
Confidence 44433333333 999999992211 1 3334569999999988877521100000000 001112
Q ss_pred eEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhhCCCCcchhhccccccC
Q 004467 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLWGENFFDPATKKWTTKN 170 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkldg~~~~~~~~~~~~~~~ 170 (752)
..++|+|||||.+|...+.++++.+|++++|+|+.+|+. ..+...++|.++++||+|...- |...
T Consensus 526 p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~-------~~~~- 597 (1049)
T PRK14845 526 PGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPG-------WNIS- 597 (1049)
T ss_pred CcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccc-------cccc-
Confidence 348999999999999988999999999999999998865 5667789999999999993211 1100
Q ss_pred CCCccccCcceeeEechHHHHHHHhhccchhh---HHHHHHHcCCCCChhhHhhchHHHHHHHHhccccc-------hHH
Q 004467 171 TGSATCKRGFVQFCYEPIKQIINTCMNDQKDK---LWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPA-------SSA 240 (752)
Q Consensus 171 ~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~---l~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~~~P~-------~~~ 240 (752)
....|..-+... .+.+..+.... +...|...|+.. +.+. ..+.+-. ...++|+ ++.
T Consensus 598 -----~~~~~~~~~~~q----~~~~~~el~~~l~~v~~~L~~~G~~~--e~~~-~~~d~~~--~v~iVpVSA~tGeGId~ 663 (1049)
T PRK14845 598 -----EDEPFLLNFNEQ----DQHALTELEIKLYELIGKLYELGFDA--DRFD-RVQDFTR--TVAIVPVSAKTGEGIPE 663 (1049)
T ss_pred -----cchhhhhhhhhh----HHHHHHHHHHHHHHHhhHHHhcCcch--hhhh-hhhhcCC--CceEEEEEcCCCCCHHH
Confidence 001110000000 01111111111 111233433221 1110 0000000 0134554 566
Q ss_pred HHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEE
Q 004467 241 LLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRI 320 (752)
Q Consensus 241 LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i 320 (752)
|++.+....+.-.+ ..+ ..++++|+.+.|..++.+++.|. ++.+.|++|+|+.||.|.+
T Consensus 664 Ll~~l~~l~~~~l~-------------------~~L-~~~~~~~~~g~VlEv~~~kG~G~-vvt~iv~~G~Lk~GD~iv~ 722 (1049)
T PRK14845 664 LLMMVAGLAQKYLE-------------------ERL-KLNVEGYAKGTILEVKEEKGLGT-TIDAIIYDGTLRRGDTIVV 722 (1049)
T ss_pred HHHHHHHhhHHhhh-------------------hhh-ccCCCCceEEEEEEEEEecCcee-EEEEEEEcCEEecCCEEEE
Confidence 77666432211000 000 11467899999999999998887 8999999999999999998
Q ss_pred ccCCCCCCCcccceeeeeeeEEEE--------ecCceeeeccccCCCEEEE--ecccccc
Q 004467 321 MGPNYVPGEKKDLYVKSVQRTVIW--------MGKKQETVEDVPCGNTVAM--VGLDQFI 370 (752)
Q Consensus 321 ~~~n~~~~~~~~~~~~kv~~l~~~--------~g~~~~~V~ea~AGdIvai--~Gl~~~~ 370 (752)
++.+ + ....+|..|+.. .++....+++|.|+.-|-| .|++...
T Consensus 723 g~~~----~---~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~~~ 775 (1049)
T PRK14845 723 GGPD----D---VIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEVL 775 (1049)
T ss_pred ccCC----C---cceEEEEEecCcccccccccccccccccccccCCCceEEecCCccccC
Confidence 6532 1 112366665532 1223456788888776666 3787763
No 97
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.54 E-value=3.1e-14 Score=121.85 Aligned_cols=82 Identities=22% Similarity=0.394 Sum_probs=71.7
Q ss_pred eEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEe
Q 004467 285 LMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 364 (752)
Q Consensus 285 l~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~ 364 (752)
|+++|||++.+++.|+ ++|+|||||+|++||.|++... +. .+++.+|+.++|.+..++++|.||||+++.
T Consensus 1 ~~a~VfK~~~d~~~g~-i~~~Ri~sGtl~~g~~v~~~~~----~~-----~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~ 70 (83)
T cd04092 1 LCALAFKVVHDPQRGP-LTFVRVYSGTLKRGSALYNTNT----GK-----KERISRLLQPFADQYQEIPSLSAGNIGVIT 70 (83)
T ss_pred CEEEEEecccCCCCCe-EEEEEEecCEECCCCEEEECCC----CC-----EEEeeEEEEEECCCceECCeeCCCCEEEEE
Confidence 5799999999999886 9999999999999999997532 22 268999999999999999999999999999
Q ss_pred ccccccccce-eecc
Q 004467 365 GLDQFITKNA-TLTN 378 (752)
Q Consensus 365 Gl~~~~~~tg-TL~~ 378 (752)
|++++ ++| |||+
T Consensus 71 gl~~~--~~Gdtl~~ 83 (83)
T cd04092 71 GLKQT--RTGDTLVT 83 (83)
T ss_pred CCCCc--ccCCEEeC
Confidence 99886 566 7763
No 98
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.52 E-value=1.8e-14 Score=142.85 Aligned_cols=118 Identities=40% Similarity=0.581 Sum_probs=100.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
||+++|..++|||||+++|+...+..........+++|....|+++|+|+......+.+. ...+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~ 64 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP----------------DRRV 64 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC----------------CEEE
Confidence 689999999999999999998877655432333357899999999999998877777665 6799
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
+|+||||+.+|......+++.+|++++|+|+.++.. .++...++|.++++||+|
T Consensus 65 ~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D 125 (189)
T cd00881 65 NFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKID 125 (189)
T ss_pred EEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 999999999999999999999999999999998754 445557899999999998
No 99
>cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi
Probab=99.51 E-value=3.9e-14 Score=129.40 Aligned_cols=76 Identities=22% Similarity=0.133 Sum_probs=67.9
Q ss_pred CceEEecccCccchHHHHHHHHHHHHHHHHcCCcCCCCeeeeEEEEEeeeecc-cccccCCCchHHHHHHHHHHHHHhCC
Q 004467 553 PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAK 631 (752)
Q Consensus 553 ~n~~~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-d~~~~~~~~~~~a~~~a~~~a~~~a~ 631 (752)
.|.|.+.+.+.+++++++++|.+||++|+++||++|+||+||+|+|.++.+|. |+. ...|+.|+++|+++|+.+|+
T Consensus 40 g~~~~~~~~~~~lp~~~~~ai~~g~~~a~~~Gpl~G~pv~~v~V~l~~~~~~~~~s~---~~~~~~aa~~a~~~al~~a~ 116 (116)
T cd01434 40 GFEFVNKIVGGAIPKEYIPAVEKGFREALEKGPLAGYPVVDVKVTLYDGSYHDVDSS---EMAFKIAARMAFKEAFKKAK 116 (116)
T ss_pred CCEEEEeccCCccCHHHHHHHHHHHHHHHhcCcccCCccccEEEEEEeceeecCCCC---HHHHHHHHHHHHHHHHHhcC
Confidence 46788888888899999999999999999999999999999999999999996 443 45678999999999998874
No 100
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.50 E-value=1.6e-13 Score=119.99 Aligned_cols=91 Identities=51% Similarity=0.943 Sum_probs=73.3
Q ss_pred eEEEEEEEeecC-CCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEE
Q 004467 285 LMLYVSKMIPAS-DKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 363 (752)
Q Consensus 285 l~~~V~Kv~~~~-~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai 363 (752)
++++|||+..++ +.| +++|+|||||+|++||.|++..+++.....+....+++.+||.++|.+..++++|.|||||+|
T Consensus 1 ~v~~v~Ki~~~~~~~g-~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i 79 (93)
T cd03700 1 LVMYVTKMVPTPDKGG-FIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLI 79 (93)
T ss_pred CeEEEEeCeECCCCCE-EEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEE
Confidence 478999999988 555 499999999999999999987644332112223347899999999999999999999999999
Q ss_pred eccccccccceeecc
Q 004467 364 VGLDQFITKNATLTN 378 (752)
Q Consensus 364 ~Gl~~~~~~tgTL~~ 378 (752)
.|++++ .+|++++
T Consensus 80 ~g~~~~--~~g~~~~ 92 (93)
T cd03700 80 VGLDQL--KSGTTAT 92 (93)
T ss_pred ECCccC--ceEeEec
Confidence 999885 5675553
No 101
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.49 E-value=1.1e-13 Score=118.57 Aligned_cols=80 Identities=29% Similarity=0.459 Sum_probs=69.8
Q ss_pred EEEEEEee---cCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEE
Q 004467 287 LYVSKMIP---ASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 363 (752)
Q Consensus 287 ~~V~Kv~~---~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai 363 (752)
++|||+.. +++.|+ ++|+|||||+|++||.|++.. .+. .+++.+|+.++|.+..++++|.||||+++
T Consensus 1 ~~vfKv~~~~~~~~~Gk-la~~Rv~sG~l~~g~~v~~~~----~~~-----~~kv~~l~~~~g~~~~~v~~a~aGdIv~v 70 (85)
T cd03689 1 GFVFKIQANMDPAHRDR-IAFVRVCSGKFERGMKVKHVR----LGK-----EVRLSNPQQFFAQDRETVDEAYPGDIIGL 70 (85)
T ss_pred CEEEEEecccCCCCCcE-EEEEEEECCEEcCCCEEEEcC----CCC-----EEEeeEeEEEecCCeeEcCEECCCCEEEE
Confidence 57999998 898887 999999999999999998642 222 26899999999999999999999999999
Q ss_pred eccccccccce-eecc
Q 004467 364 VGLDQFITKNA-TLTN 378 (752)
Q Consensus 364 ~Gl~~~~~~tg-TL~~ 378 (752)
.|++++ .+| |||+
T Consensus 71 ~gl~~~--~~Gdtl~~ 84 (85)
T cd03689 71 VNPGNF--QIGDTLTE 84 (85)
T ss_pred ECCCCc--cccCEeeC
Confidence 999987 566 8874
No 102
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.48 E-value=1.9e-13 Score=117.08 Aligned_cols=81 Identities=32% Similarity=0.434 Sum_probs=70.9
Q ss_pred eEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEe
Q 004467 285 LMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 364 (752)
Q Consensus 285 l~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~ 364 (752)
|+++|||+..+++.|+ ++|+|||||+|++||.|++... .. .+++.+|+.++|.+..++++|.|||||++.
T Consensus 1 ~~a~Vfk~~~d~~~G~-~~~~Rv~sG~l~~g~~v~~~~~----~~-----~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~ 70 (83)
T cd04088 1 FVALVFKTIHDPFVGK-LSFVRVYSGTLKAGSTLYNSTK----GK-----KERVGRLLRMHGKKQEEVEEAGAGDIGAVA 70 (83)
T ss_pred CEEEEEEcccCCCCce-EEEEEEecCEEcCCCEEEECCC----Cc-----EEEeeEEEEEcCCCceECCEeCCCCEEEEE
Confidence 5799999999998887 9999999999999999997631 22 268999999999999999999999999999
Q ss_pred ccccccccce-eec
Q 004467 365 GLDQFITKNA-TLT 377 (752)
Q Consensus 365 Gl~~~~~~tg-TL~ 377 (752)
|++++ .+| ||+
T Consensus 71 g~~~~--~~Gdtl~ 82 (83)
T cd04088 71 GLKDT--ATGDTLC 82 (83)
T ss_pred CCCCC--ccCCEee
Confidence 99986 566 765
No 103
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.47 E-value=4.2e-14 Score=136.78 Aligned_cols=106 Identities=30% Similarity=0.380 Sum_probs=84.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
||+++|+.++|||||+++|. |. ..+..+.|..+++|+......+.+. .++.+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~-----------~~--~~~~~~~~~~~~~t~~~~~~~~~~~---------------~~~~~ 53 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALT-----------GI--ETDRLPEEKKRGITIDLGFAYLDLP---------------SGKRL 53 (164)
T ss_pred EEEEEecCCCCHHHHHHHHh-----------Cc--ccccchhhhccCceEEeeeEEEEec---------------CCcEE
Confidence 79999999999999999994 21 1344566778899988776665553 15689
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCC-CHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGV-DESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~-p~~~~inkld 154 (752)
+++||||+.+|...+..+++.+|++++|+|+.++.. ..++..+. |.++++||+|
T Consensus 54 ~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~D 115 (164)
T cd04171 54 GFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKAD 115 (164)
T ss_pred EEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECcc
Confidence 999999999999999999999999999999988543 23344566 7788889998
No 104
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.46 E-value=3.3e-13 Score=114.88 Aligned_cols=80 Identities=24% Similarity=0.393 Sum_probs=68.9
Q ss_pred eEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEe
Q 004467 285 LMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 364 (752)
Q Consensus 285 l~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~ 364 (752)
|+++|||+..++. |+ ++|+|||||+|++||.|++.. .+. .+++.+|+.++|.+..+++++.||||+++.
T Consensus 1 ~~a~vfK~~~~~~-G~-i~~~Rv~sG~lk~gd~v~~~~----~~~-----~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~ 69 (81)
T cd04091 1 FVGLAFKLEEGRF-GQ-LTYMRIYQGKLKKGDTIYNVR----TGK-----KVRVPRLVRMHSNEMEEVEEAGAGDICAIF 69 (81)
T ss_pred CeEEEEEeecCCC-CC-EEEEEEecCEEcCCCEEEEcC----CCC-----EEEEeEEEEEeCCCceEccEECCCCEEEEE
Confidence 5799999999877 87 999999999999999999753 222 269999999999999999999999999999
Q ss_pred ccccccccce-eecc
Q 004467 365 GLDQFITKNA-TLTN 378 (752)
Q Consensus 365 Gl~~~~~~tg-TL~~ 378 (752)
|++ + ++| ||++
T Consensus 70 g~~-~--~~Gdtl~~ 81 (81)
T cd04091 70 GID-C--ASGDTFTD 81 (81)
T ss_pred CCC-c--ccCCEecC
Confidence 996 5 566 7753
No 105
>cd01693 mtEFG2_like_IV mtEF-G2 domain IV. This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome.
Probab=99.44 E-value=3.4e-13 Score=124.00 Aligned_cols=67 Identities=13% Similarity=0.153 Sum_probs=57.0
Q ss_pred CccchHHHHHHHHHHHHHHHHcCCcCCCCeeeeEEEEEeeeecccccccCCCchHHHHHHHHHHHHHhCC
Q 004467 562 GVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAK 631 (752)
Q Consensus 562 ~~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~d~~~~~~~~~~~a~~~a~~~a~~~a~ 631 (752)
+...+++++++|++|++.|+++|||+|+||+||+|+|.++.+|...+. ..++.|++.|+++|+.+|+
T Consensus 54 ~~~~p~~~~~ai~~g~~~al~~Gpl~G~pv~~v~V~l~~~~~~~~~s~---~~~~~Aa~~a~~~al~~a~ 120 (120)
T cd01693 54 IEVLLKRIQEAVENGVHSALLQGPLLGFPVQDVAITLHSLTIGPGTSP---TMISACASQCVQKALKSAG 120 (120)
T ss_pred CCcChHHHHHHHHHHHHHHHHcCCccCCceeeEEEEEEeCCcCCCCCH---HHHHHHHHHHHHHHHHhcc
Confidence 456789999999999999999999999999999999999999963211 2344789999999998874
No 106
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.44 E-value=1.6e-13 Score=141.46 Aligned_cols=293 Identities=17% Similarity=0.256 Sum_probs=190.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCc-cccCCchhHhHhcceeccceEEEEEeeccchhccccCCC-----
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDV-RMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGER----- 93 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~-~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~----- 93 (752)
-.|+++|.||+|||||++.|.+ |.++.. .|-+ .-+-.+++|.|-|-|-....--+.|..-++.++.++.+.
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTH--geLDnG-RG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdW 210 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTH--GELDNG-RGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDW 210 (641)
T ss_pred EEEEEEecccCCcceeEeeeee--cccccC-ccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccc
Confidence 3589999999999999988842 222211 1212 356678889999999888777777765555554443221
Q ss_pred ----CCCceEEEEEcCCCCcccHHHHHHHHH--hhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh--CCCC
Q 004467 94 ----NGNEYLINLIDSPGHVDFSSEVTAALR--ITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW--GENF 158 (752)
Q Consensus 94 ----~~~~~~inliDtPGh~df~~e~~~~l~--~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld--g~~~ 158 (752)
+.....|+|||..||+.|.+.++.++. ..|..+|+|.|..|+- .++..+.+|++++++|+| .+|.
T Consensus 211 vkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPANi 290 (641)
T KOG0463|consen 211 VKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPANI 290 (641)
T ss_pred eeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcHHH
Confidence 223458999999999999999999996 7899999999999986 677889999999999998 2221
Q ss_pred cchhhccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCC-CC-----hhhHhhchHHHHHHHHh
Q 004467 159 FDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVT-MK-----SEEKDLMGKALMKRVMQ 232 (752)
Q Consensus 159 ~~~~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~-l~-----~~~~~~~~~~l~~~~~~ 232 (752)
+++ .-.++.++++.-|.. ++ -++.-.....+.. .
T Consensus 291 ---------------------------------LqE----tmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~S---e 330 (641)
T KOG0463|consen 291 ---------------------------------LQE----TMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPS---E 330 (641)
T ss_pred ---------------------------------HHH----HHHHHHHHhcCCCcccCcEEEecccceEEeeccCcc---c
Confidence 111 112223333221110 00 0000000000000 1
Q ss_pred ccccc---------hHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeE
Q 004467 233 TWLPA---------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFA 303 (752)
Q Consensus 233 ~~~P~---------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~ 303 (752)
++.|+ --.||.++.+.+|.... ...+.|.-..|..+|+.++.|. ++
T Consensus 331 r~CPIFQvSNVtG~NL~LLkmFLNlls~R~~------------------------~~E~~PAeFQIDD~Y~VpGVGT-vv 385 (641)
T KOG0463|consen 331 RVCPIFQVSNVTGTNLPLLKMFLNLLSLRRQ------------------------LNENDPAEFQIDDIYWVPGVGT-VV 385 (641)
T ss_pred cccceEEeccccCCChHHHHHHHhhcCcccc------------------------cccCCCcceeecceEecCCcce-Ee
Confidence 12232 23678888777754311 1356788889999999999998 89
Q ss_pred EEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEE--Eeccccccccce-eeccCC
Q 004467 304 FGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVA--MVGLDQFITKNA-TLTNEK 380 (752)
Q Consensus 304 ~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIva--i~Gl~~~~~~tg-TL~~~~ 380 (752)
.+...+|+++-+|.+.+. |. ...++....|+.|. +++.+|..+.+|+... +.+++...++-| .+.+++
T Consensus 386 SGT~L~GtIrLND~LlLG-Pd----~~G~F~pI~iKSIH----RKRMpV~~VrcGQtASFALKKIkr~~vRKGMVmVsp~ 456 (641)
T KOG0463|consen 386 SGTLLSGTIRLNDILLLG-PD----SNGDFMPIPIKSIH----RKRMPVGIVRCGQTASFALKKIKRKDVRKGMVMVSPK 456 (641)
T ss_pred ecceeeeeEEeccEEEec-CC----CCCCeeeeehhhhh----hccccceEEeccchhhhHhhhcchhhhhcceEEecCC
Confidence 999999999999999764 33 22234445666655 5778899999999864 457776666777 666665
Q ss_pred CCCccccccccc
Q 004467 381 EVDAHPIRAMKF 392 (752)
Q Consensus 381 ~~~~~~~~~~~~ 392 (752)
..|-..+.|
T Consensus 457 ---lkPqAsweF 465 (641)
T KOG0463|consen 457 ---LKPQASWEF 465 (641)
T ss_pred ---CCcceeeEE
Confidence 233444554
No 107
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.43 E-value=1e-12 Score=113.24 Aligned_cols=84 Identities=25% Similarity=0.451 Sum_probs=71.6
Q ss_pred eEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEe
Q 004467 285 LMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 364 (752)
Q Consensus 285 l~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~ 364 (752)
|.|+|||+..+++.|+ ++|+|||||+|++||+|++...+ . +...+++.+++.++|.+..+++++.||||+++.
T Consensus 1 ~~~~vfk~~~d~~~g~-i~~~Rv~sG~l~~g~~v~~~~~~----~--~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~ 73 (86)
T cd03691 1 LQMLVTTLDYDDYVGR-IAIGRIFRGTVKVGQQVAVVKRD----G--KIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIA 73 (86)
T ss_pred CeEEEEEeEecCCCCe-EEEEEEEeCEEcCCCEEEEEcCC----C--CEEEEEEeeEeeeeCCCeeECcEECCCCEEEEE
Confidence 4789999999998887 99999999999999999976432 1 122368999999999999999999999999999
Q ss_pred ccccccccce-eec
Q 004467 365 GLDQFITKNA-TLT 377 (752)
Q Consensus 365 Gl~~~~~~tg-TL~ 377 (752)
|++++ .+| ||+
T Consensus 74 gl~~~--~~Gdtl~ 85 (86)
T cd03691 74 GIEDI--TIGDTIC 85 (86)
T ss_pred CCCCC--cccceec
Confidence 99887 556 665
No 108
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.34 E-value=4.5e-12 Score=109.14 Aligned_cols=81 Identities=22% Similarity=0.360 Sum_probs=66.3
Q ss_pred eEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEe
Q 004467 285 LMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 364 (752)
Q Consensus 285 l~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~ 364 (752)
|.++|||+..+++.|+ ++|+|||||+|++||.|++.. .++ .+++.+|+.+ +.+..+++++.||||+++.
T Consensus 1 ~~~~Vfk~~~d~~~G~-i~~~Rv~sG~l~~~~~v~~~~----~~~-----~~~i~~l~~~-~~~~~~~~~~~aGdI~~v~ 69 (86)
T cd03699 1 LRALIFDSWYDPYRGV-IALVRVFDGTLKKGDKIRFMS----TGK-----EYEVEEVGIF-RPEMTPTDELSAGQVGYII 69 (86)
T ss_pred CEEEEEEeeccCCCCE-EEEEEEEcCEEcCCCEEEEec----CCC-----eEEEEEEEEE-CCCccCCceECCCCEEEEE
Confidence 5799999999999887 999999999999999998653 122 2689999954 7778999999999999996
Q ss_pred -c---cccccccce-eecc
Q 004467 365 -G---LDQFITKNA-TLTN 378 (752)
Q Consensus 365 -G---l~~~~~~tg-TL~~ 378 (752)
| ++++ .+| ||++
T Consensus 70 ~g~~~l~~~--~~Gdtl~~ 86 (86)
T cd03699 70 AGIKTVKDA--RVGDTITL 86 (86)
T ss_pred ccccccCcc--ccccEeeC
Confidence 4 5555 566 7763
No 109
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=3.5e-12 Score=131.74 Aligned_cols=278 Identities=18% Similarity=0.217 Sum_probs=181.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCcc-ccCCchhHhHhcceeccceEEEEEeeccchhccccC-----CC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR-MTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG-----ER 93 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~-~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~-----~~ 93 (752)
-.++++|..|+|||||++-|. .|-++.. .|+++ -+-.+++|.+-|-|-..+.-.+.|+..++..|.-++ ..
T Consensus 168 vRvAVlGg~D~GKSTLlGVLT--QgeLDnG-~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~ 244 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLT--QGELDNG-NGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV 244 (591)
T ss_pred EEEEEecCcccCcceeeeeee--cccccCC-CCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence 368999999999999998883 3333321 34443 356788999999998877777777765554432211 12
Q ss_pred CCCceEEEEEcCCCCcccHHHHHHHHH--hhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhhCCCCcchhhc
Q 004467 94 NGNEYLINLIDSPGHVDFSSEVTAALR--ITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLWGENFFDPATK 164 (752)
Q Consensus 94 ~~~~~~inliDtPGh~df~~e~~~~l~--~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkldg~~~~~~~~~ 164 (752)
+..+..++|||-.||..|...++.||. -.|.|+|||+|..|+. .++..+++|.+++++|||
T Consensus 245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~D---------- 314 (591)
T KOG1143|consen 245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMD---------- 314 (591)
T ss_pred hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeec----------
Confidence 334679999999999999999999998 5799999999999987 778889999999999998
Q ss_pred cccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhch---HHHHHHHHhccccc----
Q 004467 165 KWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMG---KALMKRVMQTWLPA---- 237 (752)
Q Consensus 165 ~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~---~~l~~~~~~~~~P~---- 237 (752)
-.++. | +++. -..+..++.+.|..--+.-..... ++--+.+...++|+
T Consensus 315 l~~~~--~-------------------~~~t----v~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vS 369 (591)
T KOG1143|consen 315 LVDRQ--G-------------------LKKT----VKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVS 369 (591)
T ss_pred cccch--h-------------------HHHH----HHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEe
Confidence 11110 0 1111 123555666544321110000000 11111122345664
Q ss_pred -----hHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeee
Q 004467 238 -----SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKV 312 (752)
Q Consensus 238 -----~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL 312 (752)
.-.+|..+.+.+|+-..+.. + + .+ ...|.-..|..+|..++.|. ++-|-+-+|.+
T Consensus 370 sVsGegl~ll~~fLn~Lsp~~~~~e-~----------~----~L----~q~~~eFqvdEiy~Vp~VG~-VVGG~Ls~G~l 429 (591)
T KOG1143|consen 370 SVSGEGLRLLRTFLNCLSPAGTAEE-R----------I----QL----VQLPAEFQVDEIYNVPHVGQ-VVGGMLSEGQL 429 (591)
T ss_pred ecCccchhHHHHHHhhcCCcCChHH-H----------H----HH----hcCcceeeHhHeecCCcccc-cccceeeecee
Confidence 34677777777754321110 0 0 00 12345567777888889998 77889999999
Q ss_pred cCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEe
Q 004467 313 STGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 364 (752)
Q Consensus 313 ~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~ 364 (752)
+.|+.+.+.|- ....+...+|..|. +.+.++..+.||+-..+.
T Consensus 430 ~Eg~~~~vGP~-----~DG~F~~itV~sI~----Rnr~acrvvraGqaAsls 472 (591)
T KOG1143|consen 430 HEGADVLVGPM-----KDGTFEKITVGSIR----RNRQACRVVRAGQAASLS 472 (591)
T ss_pred ccCceeEeecC-----CCCceeEEEeeeee----ccccceeeecCccceeee
Confidence 99999988642 22346667888777 355678889999977664
No 110
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=3e-12 Score=142.01 Aligned_cols=119 Identities=23% Similarity=0.272 Sum_probs=84.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCC--CCCce
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGER--NGNEY 98 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~--~~~~~ 98 (752)
.+||+||||+|||-|++.|-..+ + ....+| |||.+.....|.-..-...-..+.... ..+--
T Consensus 477 IcCilGHVDTGKTKlld~ir~tN-V-qegeag--------------gitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvP 540 (1064)
T KOG1144|consen 477 ICCILGHVDTGKTKLLDKIRGTN-V-QEGEAG--------------GITQQIGATYFPAENIREKTKELKKDAKKRLKVP 540 (1064)
T ss_pred eEEEeecccccchHHHHHhhccc-c-cccccc--------------ceeeeccccccchHHHHHHHHHHHhhhhhhcCCC
Confidence 68999999999999999994321 1 112244 677666654443221000000000000 11233
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhhC
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLWG 155 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkldg 155 (752)
-+.+||||||..|+.--.++.+.||.||||||...|++ .+++..+.|.++.+||+|+
T Consensus 541 g~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDR 604 (1064)
T KOG1144|consen 541 GLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDR 604 (1064)
T ss_pred eeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhh
Confidence 57899999999999999999999999999999999987 7888899999999999994
No 111
>COG1159 Era GTPase [General function prediction only]
Probab=99.27 E-value=4.5e-12 Score=129.81 Aligned_cols=105 Identities=23% Similarity=0.214 Sum_probs=73.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
.--|||+|.+++|||||+++|+...-.|..+...+ -......+.. .+++
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QT----------------TR~~I~GI~t---------------~~~~ 54 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQT----------------TRNRIRGIVT---------------TDNA 54 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcch----------------hhhheeEEEE---------------cCCc
Confidence 44689999999999999999975544443322221 1111111111 2478
Q ss_pred EEEEEcCCC-Cc-------ccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 99 LINLIDSPG-HV-------DFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPG-h~-------df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
+|.|+|||| |. -...++..++..+|.+++||||.++.. ..+++.+.|+++++||+|
T Consensus 55 QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID 125 (298)
T COG1159 55 QIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKID 125 (298)
T ss_pred eEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccc
Confidence 999999999 32 245668888899999999999999654 333444679999999988
No 112
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=3.2e-13 Score=142.57 Aligned_cols=120 Identities=30% Similarity=0.399 Sum_probs=94.4
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC---------------ccccCCchhHhHhcceeccceEEEEEe
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD---------------VRMTDTRADEAERGITIKSTGISLYYE 80 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~---------------~~~~D~~~~E~eRgiTi~s~~~~~~~~ 80 (752)
.+..+||+++||+|+||||+.. +.+|.++.+.+.+ .+.+|.+..||+|||+|..+.-.+
T Consensus 4 ~~~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~--- 77 (391)
T KOG0052|consen 4 EKIHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF--- 77 (391)
T ss_pred cccccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecc---
Confidence 3456799999999999999998 7778887753221 479999999999999976654332
Q ss_pred eccchhccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH--------------HHHHHhCCC-
Q 004467 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--------------MYASKFGVD- 145 (752)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~--------------~~~~~~~~p- 145 (752)
++..|.+++||.|||.||..+|+++.+++|.|+++|.|..|.. .++..+|+.
T Consensus 78 -------------~t~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~q 144 (391)
T KOG0052|consen 78 -------------ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQ 144 (391)
T ss_pred -------------cceeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhcccccee
Confidence 2347899999999999999999999999999999999944432 445566644
Q ss_pred HHHHHHHhh
Q 004467 146 ESKMMERLW 154 (752)
Q Consensus 146 ~~~~inkld 154 (752)
.++-+||||
T Consensus 145 liv~v~k~D 153 (391)
T KOG0052|consen 145 LIVGVNKMD 153 (391)
T ss_pred eeEEeeccc
Confidence 456678888
No 113
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.25 E-value=7e-12 Score=121.84 Aligned_cols=105 Identities=30% Similarity=0.336 Sum_probs=78.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
.|+|+|+.++|||||+++|....- .. ...+++|.......+.+. ...++.+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~--~~--------------~~~~~~t~~~~~~~~~~~-------------~~~~~~~ 52 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNV--AA--------------GEAGGITQHIGAFEVPAE-------------VLKIPGI 52 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccc--cc--------------ccCCCeEEeeccEEEecc-------------cCCcceE
Confidence 589999999999999999963221 00 122355554443333331 0126789
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
+++|||||.+|......+++.+|++++|+|+.++.. ..+...++|.++++||+|
T Consensus 53 ~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~D 113 (168)
T cd01887 53 TFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKID 113 (168)
T ss_pred EEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEcee
Confidence 999999999998888889999999999999998633 456678999999999998
No 114
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.23 E-value=1.4e-11 Score=132.95 Aligned_cols=104 Identities=21% Similarity=0.177 Sum_probs=85.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
..|+|+|.+|.|||||.++|+...-.|..... |.|-+.......|. ++.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~p---------------GvTRDr~y~~~~~~----------------~~~ 52 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTP---------------GVTRDRIYGDAEWL----------------GRE 52 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCC---------------CCccCCccceeEEc----------------Cce
Confidence 67999999999999999999655444433223 57777777778886 788
Q ss_pred EEEEcCCCCcccH---------HHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFS---------SEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~---------~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
+.+|||+|..+.. .++..|+..||.+|+|||+.+|+. .++++.+.|+++++||+|
T Consensus 53 f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D 123 (444)
T COG1160 53 FILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKID 123 (444)
T ss_pred EEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEccc
Confidence 9999999976433 347788899999999999999988 666777899999999998
No 115
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.17 E-value=3.2e-11 Score=117.24 Aligned_cols=106 Identities=12% Similarity=0.030 Sum_probs=76.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
||+++|+.|+|||||+++|....+.. .+. .. .+...|+......+.+. +..+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~----~~~--~~------~~~~~t~~~~~~~~~~~----------------~~~~ 52 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY----KGL--PP------SKITPTVGLNIGTIEVG----------------NARL 52 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc----cCC--cc------cccCCccccceEEEEEC----------------CEEE
Confidence 68999999999999999997543210 110 00 01123444444445553 6899
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHH---HhCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYAS---KFGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~---~~~~p~~~~inkld 154 (752)
+++|||||.+|.......++.+|++++|+|+...-. .+.+ ..++|.++++||+|
T Consensus 53 ~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 118 (167)
T cd04160 53 KFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQD 118 (167)
T ss_pred EEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccc
Confidence 999999999999888888999999999999987522 1111 24789999999999
No 116
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.17 E-value=1.8e-11 Score=117.32 Aligned_cols=101 Identities=23% Similarity=0.210 Sum_probs=73.6
Q ss_pred EEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEEEE
Q 004467 23 SVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINL 102 (752)
Q Consensus 23 ~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~inl 102 (752)
+++|+.|+|||||+++|+........ ...++|.........+. ++.+++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~----------------~~~~~i 49 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVE---------------DTPGVTRDRIYGEAEWG----------------GREFIL 49 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeec---------------CCCCceeCceeEEEEEC----------------CeEEEE
Confidence 57999999999999999633211100 01234444444344443 688999
Q ss_pred EcCCCCcccHH--------HHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 103 IDSPGHVDFSS--------EVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 103 iDtPGh~df~~--------e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
+|||||.++.. +....++.+|++++|+|+..+.. .+++..++|.++++||+|
T Consensus 50 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D 116 (157)
T cd01894 50 IDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVD 116 (157)
T ss_pred EECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcc
Confidence 99999998654 55677899999999999987653 566677899999999998
No 117
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.16 E-value=3e-11 Score=136.37 Aligned_cols=107 Identities=21% Similarity=0.248 Sum_probs=81.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
...+|+++|++++|||||+++|+.....+... ..|.|.++....+.+. +
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~---------------~~gtt~~~~~~~~~~~----------------~ 220 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSD---------------IAGTTRDSIDTPFERD----------------G 220 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecC---------------CCCceEEEEEEEEEEC----------------C
Confidence 45789999999999999999997654433221 2367777665555554 6
Q ss_pred eEEEEEcCCCCcccH-----------HHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhhC
Q 004467 98 YLINLIDSPGHVDFS-----------SEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLWG 155 (752)
Q Consensus 98 ~~inliDtPGh~df~-----------~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkldg 155 (752)
..++|+||||+.+.. ..+.++++.+|++|+|+|+.+|.. .++.+.+.|.++++||+|.
T Consensus 221 ~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl 296 (435)
T PRK00093 221 QKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDL 296 (435)
T ss_pred eeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccC
Confidence 789999999975421 235678899999999999999876 5566788999999999993
No 118
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.10 E-value=1.1e-10 Score=113.38 Aligned_cols=105 Identities=22% Similarity=0.280 Sum_probs=73.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
.++|+++|+.++|||||+++|+.....+.. ..++.|.......+.+. +.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~----------------~~ 50 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVS---------------DIAGTTRDSIDVPFEYD----------------GK 50 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceecc---------------CCCCCccCceeeEEEEC----------------Ce
Confidence 467999999999999999999644322111 11234444433333332 56
Q ss_pred EEEEEcCCCCcccH-----------HHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFS-----------SEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~-----------~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
.++++||||+.++. .....+++.+|++++|+|+..+.. .++...+.|.++++||+|
T Consensus 51 ~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D 124 (174)
T cd01895 51 KYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWD 124 (174)
T ss_pred eEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccc
Confidence 78999999976542 234556789999999999988754 445556899999999998
No 119
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.09 E-value=6.5e-11 Score=133.47 Aligned_cols=102 Identities=24% Similarity=0.259 Sum_probs=79.9
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEEE
Q 004467 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLIN 101 (752)
Q Consensus 22 i~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~in 101 (752)
|+|+|++++|||||+++|+.....+.. | ..|+|.+.....+.|. +..++
T Consensus 2 i~ivG~~nvGKStL~n~l~~~~~~~v~---------~------~~g~t~d~~~~~~~~~----------------~~~~~ 50 (429)
T TIGR03594 2 VAIVGRPNVGKSTLFNRLTGKRDAIVS---------D------TPGVTRDRKYGDAEWG----------------GREFI 50 (429)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcceec---------C------CCCcccCceEEEEEEC----------------CeEEE
Confidence 899999999999999999643322211 1 1256666666666775 67899
Q ss_pred EEcCCCCc--------ccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 102 LIDSPGHV--------DFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 102 liDtPGh~--------df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
++||||+. .+...+..+++.+|++++|+|+.+|.. .++++.++|+++++||+|
T Consensus 51 liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D 118 (429)
T TIGR03594 51 LIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKID 118 (429)
T ss_pred EEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 99999973 345667788999999999999998855 667778999999999998
No 120
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.09 E-value=9.8e-11 Score=132.05 Aligned_cols=106 Identities=23% Similarity=0.234 Sum_probs=80.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
.-+|+++|++++|||||+++|+.....+... ..|.|.++....+.+. +.
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~---------------~~gtt~~~~~~~~~~~----------------~~ 220 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSD---------------IAGTTRDSIDIPFERN----------------GK 220 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCC---------------CCCceECcEeEEEEEC----------------Cc
Confidence 4689999999999999999997544332211 2356776655555554 56
Q ss_pred EEEEEcCCCCcccH-----------HHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhhC
Q 004467 99 LINLIDSPGHVDFS-----------SEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLWG 155 (752)
Q Consensus 99 ~inliDtPGh~df~-----------~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkldg 155 (752)
.+.|+||||+.++. ..+..+++.+|++|+|+|+.+|+. .++.+.++|.++++||+|.
T Consensus 221 ~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl 295 (429)
T TIGR03594 221 KYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDL 295 (429)
T ss_pred EEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECccc
Confidence 89999999986543 224567889999999999999876 5566778999999999994
No 121
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.07 E-value=9.6e-11 Score=113.80 Aligned_cols=107 Identities=16% Similarity=0.219 Sum_probs=74.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
..++|+++|+.++|||||+++|+. |.... +...-++.+.....+.+. +..
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~--~~~~~--------------~~~~t~~~~~~~~~~~~~--------------~~~ 51 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKS--GTFSE--------------RQGNTIGVDFTMKTLEIE--------------GKR 51 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhh--CCCcc--------------cCCCccceEEEEEEEEEC--------------CEE
Confidence 368999999999999999999853 21111 000111122222333342 224
Q ss_pred eEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HH---HH---HhCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MY---AS---KFGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~---~~---~~~~p~~~~inkld 154 (752)
..++|.||||+.+|.......++.+|++++|+|+..... .+ .. ..++|.+++.||+|
T Consensus 52 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 119 (165)
T cd01864 52 VKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCD 119 (165)
T ss_pred EEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcc
Confidence 688999999999999888888999999999999998754 11 11 23678888899998
No 122
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.06 E-value=1.9e-10 Score=130.85 Aligned_cols=118 Identities=18% Similarity=0.251 Sum_probs=84.4
Q ss_pred HHHHHHhhc-ccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccc
Q 004467 6 AEGLRRIMD-FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDD 84 (752)
Q Consensus 6 ~~~~~~~~~-~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~ 84 (752)
.+++..+-. +..++.+|+|+|++++|||||+++|+.....+... .-|+|.+.....+.|.
T Consensus 24 ~~~~~~~~~~~~~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~---------------~~gvT~d~~~~~~~~~---- 84 (472)
T PRK03003 24 DEDLAELEAAEGGPLPVVAVVGRPNVGKSTLVNRILGRREAVVED---------------VPGVTRDRVSYDAEWN---- 84 (472)
T ss_pred hhhHHhhhcccCCCCCEEEEEcCCCCCHHHHHHHHhCcCcccccC---------------CCCCCEeeEEEEEEEC----
Confidence 445533331 33567899999999999999999996433221111 1255655444444554
Q ss_pred hhccccCCCCCCceEEEEEcCCCCcc--------cHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHH
Q 004467 85 ALKSYKGERNGNEYLINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKM 149 (752)
Q Consensus 85 ~~~~~~~~~~~~~~~inliDtPGh~d--------f~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~ 149 (752)
++.++|+||||+.. |...+..+++.||++|+|+|+..|.. .++++.++|+++|
T Consensus 85 ------------~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV 152 (472)
T PRK03003 85 ------------GRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILA 152 (472)
T ss_pred ------------CcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEE
Confidence 67899999999763 44556678899999999999998743 5566788999999
Q ss_pred HHHhh
Q 004467 150 MERLW 154 (752)
Q Consensus 150 inkld 154 (752)
+||+|
T Consensus 153 ~NK~D 157 (472)
T PRK03003 153 ANKVD 157 (472)
T ss_pred EECcc
Confidence 99999
No 123
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.05 E-value=1.2e-10 Score=111.83 Aligned_cols=99 Identities=21% Similarity=0.239 Sum_probs=72.6
Q ss_pred EEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEEEEE
Q 004467 24 VIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLI 103 (752)
Q Consensus 24 iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~inli 103 (752)
++|+.++|||||+++|...... .+ ...|+|+......+.|. ++.++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~-----~~-----------~~~~~t~~~~~~~~~~~----------------~~~~~li 48 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQK-----VG-----------NWPGVTVEKKEGRFKLG----------------GKEIEIV 48 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccc-----cc-----------CCCCcccccceEEEeeC----------------CeEEEEE
Confidence 5899999999999999432110 11 12477887776666664 5789999
Q ss_pred cCCCCcccHHH-----H-HHHH--HhhcceEEEEecchhHH-----HHHHHhCCCHHHHHHHhh
Q 004467 104 DSPGHVDFSSE-----V-TAAL--RITDGALVVVDCIEGVC-----MYASKFGVDESKMMERLW 154 (752)
Q Consensus 104 DtPGh~df~~e-----~-~~~l--~~~D~avlvvda~~Gv~-----~~~~~~~~p~~~~inkld 154 (752)
||||+.+|... + ...+ ..+|++++|+|+...-. ..+.+.++|+++++||+|
T Consensus 49 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~iiv~NK~D 112 (158)
T cd01879 49 DLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNLYLTLQLLELGLPVVVALNMID 112 (158)
T ss_pred ECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHHHHHHHHHHcCCCEEEEEehhh
Confidence 99999887642 2 2333 38999999999997533 345668999999999999
No 124
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.05 E-value=1.5e-10 Score=130.77 Aligned_cols=104 Identities=22% Similarity=0.204 Sum_probs=78.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
..|+++|+.|+|||||+++|+.....+.. + .-|+|.+.....+.|. ++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~---------~------~~~~t~d~~~~~~~~~----------------~~~ 50 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVA---------D------TPGVTRDRIYGEAEWL----------------GRE 50 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeC---------C------CCCCcccceEEEEEEC----------------CcE
Confidence 46999999999999999999643221111 1 1245555555555664 588
Q ss_pred EEEEcCCCCcc----c----HHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 100 INLIDSPGHVD----F----SSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~d----f----~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
++++||||+.+ + ...+..+++.+|++|+|+|+.+|.. .++++.++|+++++||+|
T Consensus 51 ~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D 120 (435)
T PRK00093 51 FILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVD 120 (435)
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECcc
Confidence 99999999988 3 3345678899999999999998754 567778999999999999
No 125
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.04 E-value=1.4e-10 Score=125.45 Aligned_cols=105 Identities=23% Similarity=0.337 Sum_probs=89.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
..-|||+|++++|||||+++|+.....|....+| .|+++-.+.+.|+ +.
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aG---------------TTRD~I~~~~e~~----------------~~ 226 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAG---------------TTRDSIDIEFERD----------------GR 226 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEecCCCC---------------ccccceeeeEEEC----------------Ce
Confidence 5779999999999999999998887777665555 6888878888885 78
Q ss_pred EEEEEcCCCC----------cccH-HHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 99 LINLIDSPGH----------VDFS-SEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh----------~df~-~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
.+.||||.|. +.|+ ..+..|+..||.+++|+||.+|+. .++.+.|.+.++++||+|
T Consensus 227 ~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWD 300 (444)
T COG1160 227 KYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWD 300 (444)
T ss_pred EEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccc
Confidence 9999999993 3343 237778889999999999999988 778889999999999998
No 126
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.04 E-value=3e-10 Score=110.61 Aligned_cols=102 Identities=17% Similarity=0.126 Sum_probs=67.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce-E
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY-L 99 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 99 (752)
||+++|+.++|||||+++|......+.. .. +.|.......+.+. ++ .
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~-~~---------------~~t~~~~~~~~~~~----------------~~~~ 49 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIAD-YP---------------FTTLVPNLGVVRVD----------------DGRS 49 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccC-CC---------------ccccCCcceEEEcC----------------CCCe
Confidence 7999999999999999999532211110 01 12333322233333 34 8
Q ss_pred EEEEcCCCCc-------ccHHHHHHHHHhhcceEEEEecchh---HH------HHHHH-----hCCCHHHHHHHhh
Q 004467 100 INLIDSPGHV-------DFSSEVTAALRITDGALVVVDCIEG---VC------MYASK-----FGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~-------df~~e~~~~l~~~D~avlvvda~~G---v~------~~~~~-----~~~p~~~~inkld 154 (752)
++|+||||+. ++.....+.+..+|++++|+|+..+ .. ..... .++|.++++||+|
T Consensus 50 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~D 125 (170)
T cd01898 50 FVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKID 125 (170)
T ss_pred EEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchh
Confidence 9999999974 2445566777789999999999976 22 11222 2688888999998
No 127
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.04 E-value=1.8e-10 Score=121.53 Aligned_cols=103 Identities=21% Similarity=0.122 Sum_probs=69.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
.|+++|++|+|||||+++|+...-.+.....+ .|... .....+. .++++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~---------------TTr~~-i~~i~~~---------------~~~qi 50 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQ---------------TTRNR-ISGIHTT---------------GASQI 50 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCC---------------cccCc-EEEEEEc---------------CCcEE
Confidence 48999999999999999997543222111122 12111 1111111 25689
Q ss_pred EEEcCCCCccc--------HHHHHHHHHhhcceEEEEecchhHH------HHHHHhCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGVC------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df--------~~e~~~~l~~~D~avlvvda~~Gv~------~~~~~~~~p~~~~inkld 154 (752)
.|+||||+.+. ...+..++..+|++++|+|+..+.. ..+...+.|.++++||+|
T Consensus 51 i~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~D 118 (270)
T TIGR00436 51 IFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLD 118 (270)
T ss_pred EEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECee
Confidence 99999997542 3345677889999999999987643 344567899999999988
No 128
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.03 E-value=3.2e-10 Score=110.40 Aligned_cols=110 Identities=15% Similarity=0.206 Sum_probs=76.8
Q ss_pred hcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceE--EEEEeeccchhcccc
Q 004467 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGI--SLYYEMTDDALKSYK 90 (752)
Q Consensus 13 ~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~--~~~~~~~~~~~~~~~ 90 (752)
|...+..++|+++|+.++|||||+++|+. +.... ..+.|+..... .+.+.
T Consensus 1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~--~~~~~----------------~~~~t~~~~~~~~~~~~~---------- 52 (169)
T cd04114 1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQ--GLFPP----------------GQGATIGVDFMIKTVEIK---------- 52 (169)
T ss_pred CCCCCceeEEEEECCCCCCHHHHHHHHHh--CCCCC----------------CCCCceeeEEEEEEEEEC----------
Confidence 33345679999999999999999999853 21111 01233332222 23332
Q ss_pred CCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHH---H---HhCCCHHHHHHHhh
Q 004467 91 GERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYA---S---KFGVDESKMMERLW 154 (752)
Q Consensus 91 ~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~---~---~~~~p~~~~inkld 154 (752)
+....+.+.||||+.+|.......++.+|++++|+|+..+.. .+. + ..++|.+++.||+|
T Consensus 53 ----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D 123 (169)
T cd04114 53 ----GEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKID 123 (169)
T ss_pred ----CEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcc
Confidence 234678889999999999998999999999999999997643 221 1 23677888889988
No 129
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.02 E-value=2.4e-10 Score=109.32 Aligned_cols=103 Identities=19% Similarity=0.224 Sum_probs=72.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
.|+++|++++|||||+++|+......... ..+.|.......+.+. ++.+
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~----------------~~~~ 51 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSD---------------IAGTTRDVIEESIDIG----------------GIPV 51 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccC---------------CCCCccceEEEEEEeC----------------CEEE
Confidence 68999999999999999996433211110 1244444333333332 6789
Q ss_pred EEEcCCCCcccHHH--------HHHHHHhhcceEEEEecchhHH-----HHHHHhCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVC-----MYASKFGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e--------~~~~l~~~D~avlvvda~~Gv~-----~~~~~~~~p~~~~inkld 154 (752)
+++||||+.++... +...+..+|++++|+|+..... .+....+.|+++++||+|
T Consensus 52 ~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D 118 (157)
T cd04164 52 RLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSD 118 (157)
T ss_pred EEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchh
Confidence 99999999887543 4457789999999999995433 222256899999999999
No 130
>PRK15494 era GTPase Era; Provisional
Probab=99.02 E-value=3.1e-10 Score=123.31 Aligned_cols=106 Identities=15% Similarity=0.175 Sum_probs=70.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
+..+|+++|+.++|||||+++|+...-.+.....+ .|.......+.+. +
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~---------------tTr~~~~~~~~~~----------------~ 99 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQ---------------TTRSIITGIITLK----------------D 99 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCC---------------CccCcEEEEEEeC----------------C
Confidence 34589999999999999999996432221111111 2222211223343 6
Q ss_pred eEEEEEcCCCCccc--------HHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df--------~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
++++|+||||..+. ......+++.+|++|+|||+.++.. ..++..+.|.++++||+|
T Consensus 100 ~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiD 171 (339)
T PRK15494 100 TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKID 171 (339)
T ss_pred eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhc
Confidence 78999999997432 2334456789999999999987643 334556778888889998
No 131
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.01 E-value=3.8e-10 Score=133.83 Aligned_cols=105 Identities=21% Similarity=0.249 Sum_probs=77.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
..+|+++||+|+|||||.++|. |...+ .|+ + -|.|+......+.|. ++
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Lt---g~~~~--vgn-----~------pGvTve~k~g~~~~~----------------~~ 50 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLT---GARQR--VGN-----W------AGVTVERKEGQFSTT----------------DH 50 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHh---CCCCc--cCC-----C------CCceEeeEEEEEEcC----------------ce
Confidence 3579999999999999999994 32211 232 1 366776555555554 78
Q ss_pred EEEEEcCCCCcccHH--------HHHHHH----HhhcceEEEEecchhHH-----HHHHHhCCCHHHHHHHhhC
Q 004467 99 LINLIDSPGHVDFSS--------EVTAAL----RITDGALVVVDCIEGVC-----MYASKFGVDESKMMERLWG 155 (752)
Q Consensus 99 ~inliDtPGh~df~~--------e~~~~l----~~~D~avlvvda~~Gv~-----~~~~~~~~p~~~~inkldg 155 (752)
.++++||||+.+|.. |.+... ..+|++++|+|++.... .++.++++|+++++||+|.
T Consensus 51 ~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l~l~~ql~e~giPvIvVlNK~Dl 124 (772)
T PRK09554 51 QVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDI 124 (772)
T ss_pred EEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhHHHHHHHHHcCCCEEEEEEchhh
Confidence 999999999998853 222222 26899999999998654 5567789999999999993
No 132
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.98 E-value=3.1e-10 Score=108.15 Aligned_cols=102 Identities=24% Similarity=0.320 Sum_probs=71.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
.|+++|.+++|||||.++|....-. .| .+ -|.|+......+.+. +..+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~-----v~-----n~------pG~Tv~~~~g~~~~~----------------~~~~ 49 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQK-----VG-----NW------PGTTVEKKEGIFKLG----------------DQQV 49 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEE-----EE-----ES------TTSSSEEEEEEEEET----------------TEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCce-----ec-----CC------CCCCeeeeeEEEEec----------------CceE
Confidence 5899999999999999999533211 11 11 267777666666664 6899
Q ss_pred EEEcCCCCcccH----HH-H-HHHH--HhhcceEEEEecchhHH-----HHHHHhCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFS----SE-V-TAAL--RITDGALVVVDCIEGVC-----MYASKFGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~----~e-~-~~~l--~~~D~avlvvda~~Gv~-----~~~~~~~~p~~~~inkld 154 (752)
.|+|+||.-++. .| + ...+ ...|++++|+||..--. .++.++|+|.++++||+|
T Consensus 50 ~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D 116 (156)
T PF02421_consen 50 ELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMD 116 (156)
T ss_dssp EEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHH
T ss_pred EEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHH
Confidence 999999954432 12 2 2233 47899999999998433 667789999999999999
No 133
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.98 E-value=8.4e-10 Score=106.69 Aligned_cols=103 Identities=17% Similarity=0.194 Sum_probs=71.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccc-eEEEEEeeccchhccccCCCCCCce
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~-~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
-+|+++|..++|||||+++++..... .. ... |+... ...+.+. +...
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~-~~-~~~----------------t~~~~~~~~~~~~--------------~~~~ 50 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFV-TD-YDP----------------TIEDSYTKQCEID--------------GQWA 50 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC-cc-cCC----------------CccceEEEEEEEC--------------CEEE
Confidence 47999999999999999999753321 11 011 11100 1111221 2356
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----H----H---HHHhCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----M----Y---ASKFGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~----~---~~~~~~p~~~~inkld 154 (752)
.++++||||+.+|..-....++.+|++++|+|+.+... . + ....++|.+++.||+|
T Consensus 51 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D 118 (164)
T cd04145 51 ILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKAD 118 (164)
T ss_pred EEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcc
Confidence 89999999999999888888999999999999997543 1 1 1124788889999998
No 134
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.97 E-value=5.4e-10 Score=106.37 Aligned_cols=114 Identities=19% Similarity=0.215 Sum_probs=84.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
-.|+++|..|+||||+++++.+....+...... .++... .|..|+....-++.+. .++.
T Consensus 11 ~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~----~~s~k~--kr~tTva~D~g~~~~~---------------~~~~ 69 (187)
T COG2229 11 TKIVVIGPVGAGKTTFVRALSDKPLVITEADAS----SVSGKG--KRPTTVAMDFGSIELD---------------EDTG 69 (187)
T ss_pred eeEEEEcccccchhhHHHHhhccccceeecccc----cccccc--ccceeEeecccceEEc---------------Ccce
Confidence 478999999999999999998776644321110 011111 4456665555555554 2589
Q ss_pred EEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhC-CCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFG-VDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~-~p~~~~inkld 154 (752)
+.|.|||||..|..-..-.++.+++||++||++.+.. .+....+ +|..+++||.|
T Consensus 70 v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~D 132 (187)
T COG2229 70 VHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQD 132 (187)
T ss_pred EEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccc
Confidence 9999999999999988889999999999999999876 3334445 89999999988
No 135
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.97 E-value=5.3e-10 Score=133.12 Aligned_cols=107 Identities=18% Similarity=0.291 Sum_probs=80.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
...++|+|+|++++|||||+++|+.....+.. | .-|+|.+.......|.
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~---------~------~pGvT~d~~~~~~~~~---------------- 321 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVE---------D------TPGVTRDRVSYDAEWA---------------- 321 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeec---------C------CCCeeEEEEEEEEEEC----------------
Confidence 34689999999999999999999643222211 1 1255655444444554
Q ss_pred ceEEEEEcCCCCcc--------cHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~d--------f~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
++.++|+||||... |..++..+++.+|++|+|+|+.+|+. .++++.++|+++++||+|
T Consensus 322 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D 394 (712)
T PRK09518 322 GTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKID 394 (712)
T ss_pred CEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcc
Confidence 67899999999653 56667788999999999999998754 556678999999999998
No 136
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.96 E-value=2.1e-10 Score=106.90 Aligned_cols=91 Identities=23% Similarity=0.301 Sum_probs=72.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
+.|.++|.+++|||||+.+|........+ |. .+.| .
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~K--------------------Tq-----~i~~-------------------~ 37 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYKK--------------------TQ-----AIEY-------------------Y 37 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcCc--------------------cc-----eeEe-------------------c
Confidence 56899999999999999999432221111 11 1223 2
Q ss_pred EEEEcCCC----CcccHHHHHHHHHhhcceEEEEecchhHH----HHHHHhCCCHHHHHHHhh
Q 004467 100 INLIDSPG----HVDFSSEVTAALRITDGALVVVDCIEGVC----MYASKFGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPG----h~df~~e~~~~l~~~D~avlvvda~~Gv~----~~~~~~~~p~~~~inkld 154 (752)
=++||||| +..|...++.....||..++|.||++..+ .++..++.|++.+|+|+|
T Consensus 38 ~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f~~pvIGVITK~D 100 (143)
T PF10662_consen 38 DNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMFNKPVIGVITKID 100 (143)
T ss_pred ccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhcccCCCEEEEEECcc
Confidence 25799999 77899999999999999999999999765 888999999999999998
No 137
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.95 E-value=6.5e-10 Score=126.42 Aligned_cols=107 Identities=16% Similarity=0.240 Sum_probs=77.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
..++|+++|++++|||||+++|+.....+... ..|.|.++....+.+. +
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~---------------~~gtT~d~~~~~~~~~----------------~ 258 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDD---------------VAGTTVDPVDSLIELG----------------G 258 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccC---------------CCCccCCcceEEEEEC----------------C
Confidence 46899999999999999999997543222111 1245655544445553 5
Q ss_pred eEEEEEcCCCCc---------ccHHHH--HHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhhC
Q 004467 98 YLINLIDSPGHV---------DFSSEV--TAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLWG 155 (752)
Q Consensus 98 ~~inliDtPGh~---------df~~e~--~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkldg 155 (752)
..+.|+||||.. +|...+ ..+++.+|++|+|+|+++++. ..+...++|.++++||+|-
T Consensus 259 ~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl 334 (472)
T PRK03003 259 KTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDL 334 (472)
T ss_pred EEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 678999999952 333332 346789999999999999865 4455678999999999993
No 138
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.95 E-value=2.1e-10 Score=109.03 Aligned_cols=104 Identities=25% Similarity=0.337 Sum_probs=66.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
.+|+++|+.++|||||+++|+... ... +..++++.......+.+. +..+.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~---------------~~~~~~~~~~~~~~~~~~--------------~~~~~ 51 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FIT---------------EYKPGTTRNYVTTVIEED--------------GKTYK 51 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcC---------------cCCCCceeeeeEEEEEEC--------------CEEEE
Confidence 589999999999999999996433 111 112244444433333332 12378
Q ss_pred EEEEcCCCCcccHH-------HHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFSS-------EVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~~-------e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
++++|||||.+|.. ++...+..+|.+++|+|+..+.. .++. .++|.++++||+|
T Consensus 52 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D 119 (161)
T TIGR00231 52 FNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKID 119 (161)
T ss_pred EEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEccc
Confidence 99999999999944 34444445566666666665553 2222 2788888999988
No 139
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.94 E-value=6.6e-10 Score=107.19 Aligned_cols=101 Identities=14% Similarity=0.136 Sum_probs=71.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
+|+++|..++|||||+.+|......... +. -|+......+.+ +++.+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~-------~~----------~t~g~~~~~~~~----------------~~~~~ 47 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQI-------IV----------PTVGFNVESFEK----------------GNLSF 47 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcce-------ec----------CccccceEEEEE----------------CCEEE
Confidence 5899999999999999999532110000 00 111111122223 36899
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHH-----HhCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYAS-----KFGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~-----~~~~p~~~~inkld 154 (752)
+++||||+.+|.......++.+|++|+|+|+..... .+.+ ..++|.++++||+|
T Consensus 48 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D 115 (162)
T cd04157 48 TAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMD 115 (162)
T ss_pred EEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcc
Confidence 999999999999888888999999999999997643 1111 24689999999999
No 140
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.93 E-value=8.3e-10 Score=106.61 Aligned_cols=104 Identities=18% Similarity=0.159 Sum_probs=71.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
+|+++|+.++|||||+++|+...-.... . ..++. ...+..+.. ++....+
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~--~--------------~~~~~--~~~~~~~~~------------~~~~~~l 51 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDS--Q--------------HTIGV--EFGSKIIRV------------GGKRVKL 51 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC--C--------------Cceee--eEEEEEEEE------------CCEEEEE
Confidence 6899999999999999999643211100 0 01111 111111210 1235789
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHH------HHhCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYA------SKFGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~------~~~~~p~~~~inkld 154 (752)
+|.|||||.+|.......++.+|++|+|+|+..+.. .+. ...++|.+++.||+|
T Consensus 52 ~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D 116 (161)
T cd04113 52 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSD 116 (161)
T ss_pred EEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchh
Confidence 999999999998888888999999999999998755 111 123678888889888
No 141
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.93 E-value=7.8e-10 Score=106.88 Aligned_cols=92 Identities=15% Similarity=0.234 Sum_probs=66.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
|+|+++|++++|||||+++|. |.... + .....+.|. ..
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~-----------~~~~~------------~--~~~~~v~~~----------------~~- 39 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQ-----------GNYTL------------A--RKTQAVEFN----------------DK- 39 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHc-----------CCCcc------------C--ccceEEEEC----------------CC-
Confidence 479999999999999999983 31100 0 112233443 11
Q ss_pred EEEEcCCCC----cccHHHHHHHHHhhcceEEEEecchhHH---HHHHH--hCCCHHHHHHHhh
Q 004467 100 INLIDSPGH----VDFSSEVTAALRITDGALVVVDCIEGVC---MYASK--FGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh----~df~~e~~~~l~~~D~avlvvda~~Gv~---~~~~~--~~~p~~~~inkld 154 (752)
+++||||. .++..++..+++.+|++++|+|++++.. ..... .+.|.++++||+|
T Consensus 40 -~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~D 102 (158)
T PRK15467 40 -GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTD 102 (158)
T ss_pred -CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccc
Confidence 37999994 6788888999999999999999998853 22222 4577888889988
No 142
>PRK00089 era GTPase Era; Reviewed
Probab=98.92 E-value=9.2e-10 Score=117.57 Aligned_cols=106 Identities=20% Similarity=0.164 Sum_probs=70.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
+-..|+++|++|+|||||+++|+...-.+.....+ .|. ..... .+. ..+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~---------------tt~-~~i~~-i~~--------------~~~ 52 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQ---------------TTR-HRIRG-IVT--------------EDD 52 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCC---------------ccc-ccEEE-EEE--------------cCC
Confidence 35679999999999999999996432211110011 011 01111 111 125
Q ss_pred eEEEEEcCCCCccc--------HHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df--------~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
+++.|+||||+.+. ...+..++..+|++++|+|+..+.. ..+...++|.++++||+|
T Consensus 53 ~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiD 124 (292)
T PRK00089 53 AQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKID 124 (292)
T ss_pred ceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCc
Confidence 79999999997543 3456678889999999999988433 333445789999999998
No 143
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.92 E-value=1.4e-09 Score=105.31 Aligned_cols=104 Identities=12% Similarity=0.264 Sum_probs=70.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
+|+++|+.++|||||+.+++... .... . ....+.++.... ... +++...+
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~--~~~~--~----------~~~~~~~~~~~~--~~~--------------~~~~~~~ 51 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDG--YEPQ--Q----------LSTYALTLYKHN--AKF--------------EGKTILV 51 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCCC--c----------CCceeeEEEEEE--EEE--------------CCEEEEE
Confidence 58999999999999999996321 1100 0 000011111111 111 2246789
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHH---HHh--CCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYA---SKF--GVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~---~~~--~~p~~~~inkld 154 (752)
++.||||+..|.......++.+|++|+|+|+..+.. .+. .+. ++|.+++.||+|
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~D 115 (161)
T cd04124 52 DFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKID 115 (161)
T ss_pred EEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECcc
Confidence 999999999999888889999999999999987644 222 222 688888899988
No 144
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.91 E-value=1.2e-09 Score=105.46 Aligned_cols=104 Identities=17% Similarity=0.181 Sum_probs=72.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
+|+++|+.++|||||+++|+...- .. +..+.++.......+.+. +....+
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~~--------------~~~~~~ 51 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKF--SE--------------QYKSTIGVDFKTKTIEVD--------------GKRVKL 51 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CC--------------CCCCceeeEEEEEEEEEC--------------CEEEEE
Confidence 689999999999999999963211 00 000112222222223332 224689
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHHH------hCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYASK------FGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~~------~~~p~~~~inkld 154 (752)
+++||||+..|.......++.+|++|+|+|+..... .+... .++|.++++||+|
T Consensus 52 ~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D 116 (164)
T smart00175 52 QIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSD 116 (164)
T ss_pred EEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchh
Confidence 999999999999888889999999999999998654 22221 3688899999998
No 145
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.91 E-value=9.9e-10 Score=107.35 Aligned_cols=107 Identities=19% Similarity=0.198 Sum_probs=71.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
++.+|+++|+.++|||||+++++.. .... +....++.......+.+. +..
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~--~~~~--------------~~~~t~~~~~~~~~~~~~--------------~~~ 50 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAG--RFPE--------------RTEATIGVDFRERTVEID--------------GER 50 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC--CCCC--------------ccccceeEEEEEEEEEEC--------------CeE
Confidence 3578999999999999999999631 1110 001111111111222232 235
Q ss_pred eEEEEEcCCCCcccHHH-HHHHHHhhcceEEEEecchhHH--------HHHHH----hCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDFSSE-VTAALRITDGALVVVDCIEGVC--------MYASK----FGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df~~e-~~~~l~~~D~avlvvda~~Gv~--------~~~~~----~~~p~~~~inkld 154 (752)
+.++++||||+.+|... ....++.+|++++|+|+..... ..+.. .++|++++.||+|
T Consensus 51 ~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 120 (170)
T cd04115 51 IKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCD 120 (170)
T ss_pred EEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 78999999999998754 4555788999999999997654 12222 3588999999998
No 146
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.91 E-value=1.7e-09 Score=104.24 Aligned_cols=99 Identities=16% Similarity=0.116 Sum_probs=70.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
.|+++|+.++|||||+.+|.... . .++. -|+......+.+. +..+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~--~----------~~~~-------~t~~~~~~~~~~~----------------~~~~ 45 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGE--V----------VTTI-------PTIGFNVETVTYK----------------NLKF 45 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCC--C----------cCcC-------CccCcCeEEEEEC----------------CEEE
Confidence 37899999999999999994211 1 0110 0222222233343 6789
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHHH---hCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYASK---FGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~~---~~~p~~~~inkld 154 (752)
+++||||+.+|.......++.+|++|+|+|+...-. ...+. .++|+++++||+|
T Consensus 46 ~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D 111 (158)
T cd04151 46 QVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQD 111 (158)
T ss_pred EEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCC
Confidence 999999999998777788999999999999986432 11121 3689999999999
No 147
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.90 E-value=1.2e-09 Score=130.10 Aligned_cols=106 Identities=18% Similarity=0.226 Sum_probs=77.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
..++|+++|++++|||||+++|+.....+... .-|.|.++-...+.+. +
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~---------------~~gtT~d~~~~~~~~~----------------~ 497 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVND---------------LAGTTRDPVDEIVEID----------------G 497 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCC---------------CCCCCcCcceeEEEEC----------------C
Confidence 46899999999999999999997554322111 1245555544445554 5
Q ss_pred eEEEEEcCCCCc---------ccHHH--HHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHV---------DFSSE--VTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~---------df~~e--~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
..++|+||||+. +|... ...+++.+|++|+|+|+.+|+. ..+...++|.++++||+|
T Consensus 498 ~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~D 572 (712)
T PRK09518 498 EDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWD 572 (712)
T ss_pred CEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchh
Confidence 678899999963 33332 2456789999999999999865 345567899999999999
No 148
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.90 E-value=1.5e-09 Score=104.73 Aligned_cols=105 Identities=17% Similarity=0.162 Sum_probs=73.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
++|+++|+.++|||||+++|+...-... ...+++.+.....+.+. +....
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------------~~~~~ 50 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQ----------------YQATIGIDFLSKTMYLE--------------DKTVR 50 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc----------------CCCceeeeEEEEEEEEC--------------CEEEE
Confidence 3789999999999999999964322111 11123333222333332 23467
Q ss_pred EEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHHHhC--CCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYASKFG--VDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~~~~--~p~~~~inkld 154 (752)
++++||||+..|.......++.+|+.++|+|+..... .+....+ +|.++++||+|
T Consensus 51 l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D 116 (161)
T cd01861 51 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTD 116 (161)
T ss_pred EEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChh
Confidence 9999999999998888888999999999999987643 2223343 88888999988
No 149
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.89 E-value=1.7e-09 Score=107.65 Aligned_cols=111 Identities=16% Similarity=0.106 Sum_probs=77.9
Q ss_pred HHHhhcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhcc
Q 004467 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKS 88 (752)
Q Consensus 9 ~~~~~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~ 88 (752)
+.+.|....+...|+++|+.++|||||+++|.... ... ...|+......+.+.
T Consensus 9 ~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~--~~~-----------------~~~T~~~~~~~i~~~-------- 61 (190)
T cd00879 9 VLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDR--LAQ-----------------HVPTLHPTSEELTIG-------- 61 (190)
T ss_pred HHHHhhcccCCCEEEEECCCCCCHHHHHHHHhcCC--Ccc-----------------cCCccCcceEEEEEC--------
Confidence 44456656667788999999999999999984211 110 011222233344453
Q ss_pred ccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHH---HHhCCCHHHHHHHhh
Q 004467 89 YKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYA---SKFGVDESKMMERLW 154 (752)
Q Consensus 89 ~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~---~~~~~p~~~~inkld 154 (752)
+..++++||||+.+|.......++.+|++++|+|+.+.-. ... ...++|++++.||+|
T Consensus 62 --------~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~D 131 (190)
T cd00879 62 --------NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKID 131 (190)
T ss_pred --------CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCC
Confidence 6789999999999998777778899999999999986421 111 124688899999998
No 150
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.89 E-value=2.3e-09 Score=108.14 Aligned_cols=104 Identities=17% Similarity=0.243 Sum_probs=71.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
++|.++|+.++|||||+.+|....- .+. + .++......+... ...+...
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~------~~t--~-----------~s~~~~~~~~~~~------------~~~~~~~ 49 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKY------RST--V-----------TSIEPNVATFILN------------SEGKGKK 49 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC------CCc--c-----------CcEeecceEEEee------------cCCCCce
Confidence 4799999999999999999963211 110 0 0111111111111 0123578
Q ss_pred EEEEcCCCCcccHHHHHHHHHhh-cceEEEEecchhHH------HHH-------H--HhCCCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFSSEVTAALRIT-DGALVVVDCIEGVC------MYA-------S--KFGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~-D~avlvvda~~Gv~------~~~-------~--~~~~p~~~~inkld 154 (752)
+.++|||||..|.......++.+ +++|+|||+..... .+. . ..++|+++++||+|
T Consensus 50 ~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~D 120 (203)
T cd04105 50 FRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQD 120 (203)
T ss_pred EEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchh
Confidence 99999999999998888889998 99999999998732 111 1 13789999999998
No 151
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.89 E-value=3e-09 Score=105.51 Aligned_cols=112 Identities=16% Similarity=0.089 Sum_probs=77.9
Q ss_pred HHHHhhcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhc
Q 004467 8 GLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALK 87 (752)
Q Consensus 8 ~~~~~~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~ 87 (752)
.+..++....+-.+|+++|..++|||||+++|.... ... . .-|.......+.+.
T Consensus 6 ~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~--~~~----------~-------~~t~~~~~~~~~~~------- 59 (184)
T smart00178 6 DILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDR--LAQ----------H-------QPTQHPTSEELAIG------- 59 (184)
T ss_pred HHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCC--Ccc----------c-------CCccccceEEEEEC-------
Confidence 344466555666889999999999999999995311 100 0 01222222233343
Q ss_pred cccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHH---HhCCCHHHHHHHhh
Q 004467 88 SYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYAS---KFGVDESKMMERLW 154 (752)
Q Consensus 88 ~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~---~~~~p~~~~inkld 154 (752)
++.++++||||+..|.......++.+|++|+|+|+...-. .+.+ ..++|+++++||+|
T Consensus 60 ---------~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~D 129 (184)
T smart00178 60 ---------NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKID 129 (184)
T ss_pred ---------CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcc
Confidence 6889999999999888777788899999999999987532 1111 24788999999998
No 152
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.88 E-value=1.8e-09 Score=110.68 Aligned_cols=100 Identities=19% Similarity=0.268 Sum_probs=71.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
...+.|+++|++|+|||||++.|+...... ... ...|. +++ +. .+
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~--------~~~------~~~g~------i~i-~~--------------~~ 81 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ--------NIS------DIKGP------ITV-VT--------------GK 81 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccC--------ccc------ccccc------EEE-Ee--------------cC
Confidence 345789999999999999999997542210 000 11221 111 11 13
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHH-HHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESK-MMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~-~inkld 154 (752)
+.+++++||||+. .++..++..+|.+++|+|+.+|+. .++...++|.++ ++||+|
T Consensus 82 ~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D 144 (225)
T cd01882 82 KRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLD 144 (225)
T ss_pred CceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccc
Confidence 6789999999974 778888999999999999998875 455677888654 889988
No 153
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.88 E-value=2.5e-09 Score=105.35 Aligned_cols=104 Identities=17% Similarity=0.191 Sum_probs=71.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
|+|+++|+.|+|||||+.+++...- ... +...... .....+.+. +..+.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~-~~~-------~~~t~~~---------~~~~~~~~~--------------~~~~~ 50 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF-VES-------YYPTIEN---------TFSKIIRYK--------------GQDYH 50 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-ccc-------cCcchhh---------hEEEEEEEC--------------CEEEE
Confidence 6899999999999999999974321 100 0010000 001112221 23578
Q ss_pred EEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHHH---hCCCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYASK---FGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~~---~~~p~~~~inkld 154 (752)
++++||||+.+|.......+..+|++++|+|...+.. .+++. .++|.++++||+|
T Consensus 51 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 117 (180)
T cd04137 51 LEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSD 117 (180)
T ss_pred EEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchh
Confidence 8999999999998888889999999999999998654 22222 3678889999998
No 154
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.87 E-value=2.4e-09 Score=104.11 Aligned_cols=103 Identities=18% Similarity=0.148 Sum_probs=64.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
|+|+++|+.++|||||+++|+...-.... ..+.|.......+.+ ++..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~----------------~~~~t~~~~~~~~~~----------------~~~~ 48 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAP----------------YPFTTKSLFVGHFDY----------------KYLR 48 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCC----------------CCCcccceeEEEEcc----------------CceE
Confidence 68999999999999999999632211000 012233222222223 2679
Q ss_pred EEEEcCCCCcccH--------HHHHHHH-HhhcceEEEEecchhH----H------HHHHHh--CCCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFS--------SEVTAAL-RITDGALVVVDCIEGV----C------MYASKF--GVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~--------~e~~~~l-~~~D~avlvvda~~Gv----~------~~~~~~--~~p~~~~inkld 154 (752)
++|+||||+.+.. .....++ ..+|++|+|+|+.... . ..+... ++|+++++||+|
T Consensus 49 ~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~D 124 (168)
T cd01897 49 WQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKID 124 (168)
T ss_pred EEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccc
Confidence 9999999985421 1222233 3469999999998531 1 223333 789999999999
No 155
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.87 E-value=2.4e-09 Score=103.04 Aligned_cols=99 Identities=16% Similarity=0.103 Sum_probs=71.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
.|+++|+.++|||||+++++... ... .-.|+......+.+. ...+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~--~~~-----------------~~~t~~~~~~~~~~~----------------~~~~ 45 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE--VVT-----------------TIPTIGFNVETVEYK----------------NVSF 45 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC--CCC-----------------CCCCcCcceEEEEEC----------------CEEE
Confidence 48999999999999999996432 110 011222223334443 6789
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HH---HHHhCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MY---ASKFGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~---~~~~~~p~~~~inkld 154 (752)
++.||||+..|.......++.+|++++|+|++.+-. .. +...+.|.+++.||+|
T Consensus 46 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D 111 (158)
T cd00878 46 TVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQD 111 (158)
T ss_pred EEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccC
Confidence 999999999988777778899999999999998722 11 1134788999999999
No 156
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.86 E-value=2.8e-09 Score=101.73 Aligned_cols=99 Identities=16% Similarity=0.101 Sum_probs=69.3
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEEE
Q 004467 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLIN 101 (752)
Q Consensus 22 i~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~in 101 (752)
|+++|+.++|||||+++|....- ..++. -|+......+.+. ...++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~-----------~~~~~-------~t~~~~~~~~~~~----------------~~~~~ 47 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF-----------SEDTI-------PTVGFNMRKVTKG----------------NVTLK 47 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC-----------CcCcc-------CCCCcceEEEEEC----------------CEEEE
Confidence 78999999999999999942210 01111 1222222223332 57899
Q ss_pred EEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHH-------HhCCCHHHHHHHhh
Q 004467 102 LIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYAS-------KFGVDESKMMERLW 154 (752)
Q Consensus 102 liDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~-------~~~~p~~~~inkld 154 (752)
++||||+..|.......++.+|++++|+|+...-. .+.. ..++|.++++||+|
T Consensus 48 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 112 (159)
T cd04159 48 VWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKND 112 (159)
T ss_pred EEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcc
Confidence 99999999999888899999999999999986422 1111 14678888899998
No 157
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.86 E-value=2.8e-09 Score=103.84 Aligned_cols=102 Identities=15% Similarity=0.122 Sum_probs=69.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccce--EEEEEeeccchhccccCCCCCCce
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG--ISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
+|+++|+.++|||||+++|+...- .. . .-.|+.... ..+.+. +...
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~--~~---~-------------~~~t~~~~~~~~~~~~~--------------~~~~ 49 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKF--SN---Q-------------YKATIGADFLTKEVTVD--------------DKLV 49 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--Cc---C-------------cCCccceEEEEEEEEEC--------------CEEE
Confidence 689999999999999999964321 10 0 001111111 112222 2356
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HH----HHH------hCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MY----ASK------FGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~----~~~------~~~p~~~~inkld 154 (752)
.++++||||+.+|.......++.+|++|+|+|+..... .+ ... .++|.++++||+|
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 120 (172)
T cd01862 50 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKID 120 (172)
T ss_pred EEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcc
Confidence 78899999999998888888899999999999987653 11 111 1678888889888
No 158
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.86 E-value=2.5e-09 Score=102.04 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=71.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
+|+++|+.++|||||+++|+...-... ..+..+.......+... .....+
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~--------------~~~~~~ 51 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDEN----------------YKSTIGVDFKSKTIEID--------------GKTVKL 51 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCc----------------cCCceeeeeEEEEEEEC--------------CEEEEE
Confidence 689999999999999999963221111 00011111112222221 235789
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH--------HHHHH---hCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--------MYASK---FGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~--------~~~~~---~~~p~~~~inkld 154 (752)
+++||||+..|.......++.+|++|+|+|+.+... ..... .++|.++++||+|
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 116 (159)
T cd00154 52 QIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKID 116 (159)
T ss_pred EEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccc
Confidence 999999999999999999999999999999987432 22222 2488888889988
No 159
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.85 E-value=2.1e-09 Score=98.02 Aligned_cols=82 Identities=23% Similarity=0.254 Sum_probs=55.7
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEEE
Q 004467 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLIN 101 (752)
Q Consensus 22 i~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~in 101 (752)
|+++|..++|||||+++|+...... .+ + ..+.|.....-.+.+. +..+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~~~~----~~-----~------~~~~T~~~~~~~~~~~----------------~~~~~ 50 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKKLAK----VS-----N------IPGTTRDPVYGQFEYN----------------NKKFI 50 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTSTSSE----ES-----S------STTSSSSEEEEEEEET----------------TEEEE
T ss_pred EEEECCCCCCHHHHHHHHhcccccc----cc-----c------cccceeeeeeeeeeec----------------eeeEE
Confidence 8999999999999999997321111 11 0 1134444422233343 56778
Q ss_pred EEcCCCCcc---------cHHHHHHHHHhhcceEEEEecchh
Q 004467 102 LIDSPGHVD---------FSSEVTAALRITDGALVVVDCIEG 134 (752)
Q Consensus 102 liDtPGh~d---------f~~e~~~~l~~~D~avlvvda~~G 134 (752)
|+||||..+ ...+....+..+|++++|||+...
T Consensus 51 ~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~ 92 (116)
T PF01926_consen 51 LVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNP 92 (116)
T ss_dssp EEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSH
T ss_pred EEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCC
Confidence 999999654 334566777899999999998874
No 160
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.85 E-value=3.1e-09 Score=103.58 Aligned_cols=106 Identities=16% Similarity=0.159 Sum_probs=71.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
.-+|+++|+.++|||||+++++...-.... .. .-|.+.... .+.+. +...
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~--~~------------t~~~~~~~~--~~~~~--------------~~~~ 53 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--DL------------TIGVEFGAR--MITID--------------GKQI 53 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CC------------ccceeEEEE--EEEEC--------------CEEE
Confidence 358999999999999999999632210000 00 001222111 12221 2346
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHH---HH---hCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYA---SK---FGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~---~~---~~~p~~~~inkld 154 (752)
.+++.||||+..|.......++.+|++|+|+|+..... .+. ++ .++|.+++.||+|
T Consensus 54 ~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~D 120 (168)
T cd01866 54 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCD 120 (168)
T ss_pred EEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcc
Confidence 89999999999988888888899999999999987544 222 12 2678888889988
No 161
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.85 E-value=3.9e-09 Score=103.44 Aligned_cols=102 Identities=19% Similarity=0.161 Sum_probs=71.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
....|+++|+.++|||||+++|... ... . .+ -|+......+.+. +
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~--~~~----------~---~~----~t~g~~~~~~~~~----------------~ 57 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGE--DID----------T---IS----PTLGFQIKTLEYE----------------G 57 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccC--CCC----------C---cC----CccccceEEEEEC----------------C
Confidence 4467899999999999999999532 000 0 00 1221111223332 6
Q ss_pred eEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHH---HHhCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYA---SKFGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~---~~~~~p~~~~inkld 154 (752)
+.++++||||+..|.......++.+|++++|+|+...-. .+. ...++|.+++.||+|
T Consensus 58 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 126 (173)
T cd04154 58 YKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQD 126 (173)
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcc
Confidence 789999999999988777778899999999999988622 111 125788889999998
No 162
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.84 E-value=5e-09 Score=102.87 Aligned_cols=110 Identities=15% Similarity=0.114 Sum_probs=77.0
Q ss_pred HHHhhcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhcc
Q 004467 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKS 88 (752)
Q Consensus 9 ~~~~~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~ 88 (752)
+.+++.. ...+.|+++|+.++|||||+.+|.... .. + . .-|+......+.+.
T Consensus 6 ~~~~~~~-~~~~kv~~~G~~~~GKTsl~~~l~~~~--~~----~------~-------~~t~~~~~~~~~~~-------- 57 (174)
T cd04153 6 LWSLFFP-RKEYKVIIVGLDNAGKTTILYQFLLGE--VV----H------T-------SPTIGSNVEEIVYK-------- 57 (174)
T ss_pred HHHHhcC-CCccEEEEECCCCCCHHHHHHHHccCC--CC----C------c-------CCccccceEEEEEC--------
Confidence 4444432 335789999999999999999995311 10 0 0 12333333334443
Q ss_pred ccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHHH---hCCCHHHHHHHhh
Q 004467 89 YKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYASK---FGVDESKMMERLW 154 (752)
Q Consensus 89 ~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~~---~~~p~~~~inkld 154 (752)
+..+.++||||+..|.......++.+|++|+|+|+++... .+.+. .++|.++++||+|
T Consensus 58 --------~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~D 127 (174)
T cd04153 58 --------NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQD 127 (174)
T ss_pred --------CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCC
Confidence 6789999999999998888888999999999999987632 22221 3588899999999
No 163
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.84 E-value=3.1e-09 Score=107.11 Aligned_cols=107 Identities=18% Similarity=0.140 Sum_probs=68.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
+.+.+|+|+|+.|+|||||+++|+...-.... . -+.|+......+.+. +
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~--~--------------~~~t~~~~~~~~~~~---------------~ 87 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAED--Q--------------LFATLDPTTRRLRLP---------------D 87 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCC--c--------------cceeccceeEEEEec---------------C
Confidence 44679999999999999999999643211110 0 012333333333443 2
Q ss_pred ceEEEEEcCCCCccc-HH-------HHHHHHHhhcceEEEEecchhHH--------HHHHH---hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDF-SS-------EVTAALRITDGALVVVDCIEGVC--------MYASK---FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df-~~-------e~~~~l~~~D~avlvvda~~Gv~--------~~~~~---~~~p~~~~inkld 154 (752)
.+.++++||||+.+. .. .+...+..+|++++|+|+..+.. .+... .++|+++++||+|
T Consensus 88 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~D 164 (204)
T cd01878 88 GREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKID 164 (204)
T ss_pred CceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccc
Confidence 348999999998442 11 12234567999999999987532 22222 3578899999999
No 164
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.84 E-value=4.9e-09 Score=101.44 Aligned_cols=102 Identities=21% Similarity=0.255 Sum_probs=69.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccc-eEEEEEeeccchhccccCCCCCCceE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
.|+++|+.++|||||+++|+...- .. ++.+ |+... ...+.+ ++..+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~--~~---------~~~~-------t~~~~~~~~~~~--------------~~~~~~ 49 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF--VD---------DYDP-------TIEDSYRKQIEI--------------DGEVCL 49 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC--Cc---------ccCC-------chhhhEEEEEEE--------------CCEEEE
Confidence 589999999999999999974321 11 0000 11100 111122 123578
Q ss_pred EEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----H----HH---HHhCCCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----M----YA---SKFGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~----~~---~~~~~p~~~~inkld 154 (752)
+.++||||+.+|.......++.+|++++|+|+...-. . +. ...++|.+++.||+|
T Consensus 50 l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~D 116 (164)
T smart00173 50 LDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCD 116 (164)
T ss_pred EEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 9999999999999888888999999999999987532 1 11 113678888889988
No 165
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.83 E-value=5e-09 Score=100.77 Aligned_cols=105 Identities=22% Similarity=0.204 Sum_probs=68.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
.+.|+++|+.|+|||||+++|+...-.... +. .+.+..... ..+. ....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~---------~~------~~~~~~~~~--~~~~--------------~~~~ 51 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVS---------PK------PQTTRNRIR--GIYT--------------DDDA 51 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEecc---------CC------CCceeceEE--EEEE--------------cCCe
Confidence 467999999999999999999632211000 00 001111101 1111 1257
Q ss_pred EEEEEcCCCCcccH--------HHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFS--------SEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~--------~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
.+.++||||+.+.. ......+..+|++++|+|+..... ..+...+.|.++++||+|
T Consensus 52 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D 122 (168)
T cd04163 52 QIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKID 122 (168)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchh
Confidence 89999999976543 234556889999999999998722 445566789999999998
No 166
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.81 E-value=4.7e-09 Score=117.64 Aligned_cols=106 Identities=17% Similarity=0.201 Sum_probs=75.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
-..|+++|++|+|||||+++|+.....+..... |.|.+.....+.+. ++
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~p---------------gtTrd~~~~~i~~~----------------g~ 251 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIK---------------GTTRDVVEGDFELN----------------GI 251 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCC---------------CcEEEEEEEEEEEC----------------CE
Confidence 457999999999999999999754332222112 34544444445553 67
Q ss_pred EEEEEcCCCCcccHHH--------HHHHHHhhcceEEEEecchhHH------HHHHHhCCCHHHHHHHhhC
Q 004467 99 LINLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVC------MYASKFGVDESKMMERLWG 155 (752)
Q Consensus 99 ~inliDtPGh~df~~e--------~~~~l~~~D~avlvvda~~Gv~------~~~~~~~~p~~~~inkldg 155 (752)
.++++||||..++... ....++.+|++|+|+|+..+.. ..+...++|+++++||+|-
T Consensus 252 ~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl 322 (442)
T TIGR00450 252 LIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDL 322 (442)
T ss_pred EEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEEECccC
Confidence 8999999998766532 2356788999999999987643 2233358899999999993
No 167
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.80 E-value=3.2e-09 Score=100.34 Aligned_cols=90 Identities=23% Similarity=0.286 Sum_probs=63.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
+|+++|+.++|||||+++|. +.. . ...-| ....|. .
T Consensus 2 kv~liG~~~vGKSsL~~~l~-----------~~~-~--------~~~~t-----~~~~~~----------------~--- 37 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQ-----------GEE-I--------LYKKT-----QAVEYN----------------D--- 37 (142)
T ss_pred eEEEECCCCCCHHHHHHHHc-----------CCc-c--------ccccc-----eeEEEc----------------C---
Confidence 68999999999999999994 210 0 00011 223442 2
Q ss_pred EEEcCCCCc----ccHHHHHHHHHhhcceEEEEecchhHH----HHHHHhCCCHHHHHHHhh
Q 004467 101 NLIDSPGHV----DFSSEVTAALRITDGALVVVDCIEGVC----MYASKFGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~----df~~e~~~~l~~~D~avlvvda~~Gv~----~~~~~~~~p~~~~inkld 154 (752)
.++||||.. .+...+..+++.+|++++|+|+..+.. .+....+.|.++++||+|
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~~~p~ilv~NK~D 99 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPESRFPPGFASIFVKPVIGLVTKID 99 (142)
T ss_pred eeecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHhccCCeEEEEEeec
Confidence 689999973 344555567889999999999988765 444444568888889998
No 168
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.80 E-value=5e-09 Score=118.07 Aligned_cols=105 Identities=19% Similarity=0.228 Sum_probs=73.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
.+|+++|++++|||||+++|+.....+..... |.|.+.....+.+. ++.
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~---------------gtT~d~~~~~i~~~----------------g~~ 264 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEERAIVTDIA---------------GTTRDVIEEHINLD----------------GIP 264 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCC---------------CcccccEEEEEEEC----------------CeE
Confidence 47999999999999999999643322211112 34444433444443 678
Q ss_pred EEEEcCCCCcccHHH--------HHHHHHhhcceEEEEecchhHH-----HHHHHhCCCHHHHHHHhhC
Q 004467 100 INLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVC-----MYASKFGVDESKMMERLWG 155 (752)
Q Consensus 100 inliDtPGh~df~~e--------~~~~l~~~D~avlvvda~~Gv~-----~~~~~~~~p~~~~inkldg 155 (752)
++++||||+.++... ....++.+|++++|+|+..+.. .+....++|.++++||+|-
T Consensus 265 i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL 333 (449)
T PRK05291 265 LRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADL 333 (449)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhc
Confidence 999999999876533 2335678999999999987643 2222357899999999993
No 169
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.80 E-value=5.7e-09 Score=103.44 Aligned_cols=104 Identities=18% Similarity=0.224 Sum_probs=69.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
.|+++|+.++|||||++++++.... +.. ...|++.. ...+.+. ++....+
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~~------------~~~---~t~~~~~~--~~~~~~~-------------~~~~~~l 54 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEFV------------NTV---PTKGFNTE--KIKVSLG-------------NSKGITF 54 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcC------------CcC---Ccccccee--EEEeecc-------------CCCceEE
Confidence 4889999999999999999643211 000 00111111 1112111 1236789
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH------------HHHHHhCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC------------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~------------~~~~~~~~p~~~~inkld 154 (752)
++.||||+..|.......++.+|++|+|+|++..-. .+....++|+++++||+|
T Consensus 55 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D 120 (183)
T cd04152 55 HFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQD 120 (183)
T ss_pred EEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcC
Confidence 999999999887766667889999999999987632 111235789999999998
No 170
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.80 E-value=3.5e-09 Score=102.18 Aligned_cols=104 Identities=17% Similarity=0.206 Sum_probs=69.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
+|+++|+.++|||||+++|+...-... .+..-|.+.. ...+.+. +....+
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~~~~~~~~--~~~~~~~--------------~~~~~~ 51 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPD--------------LAATIGVDFK--VKTLTVD--------------GKKVKL 51 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc--------------cCCcccceEE--EEEEEEC--------------CEEEEE
Confidence 589999999999999999963221100 0011111111 1112221 235789
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----H-------HHHHhCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----M-------YASKFGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~-------~~~~~~~p~~~~inkld 154 (752)
.++||||+..|.......++.+|++++|+|++.... . ++...++|.+++.||+|
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D 117 (161)
T cd01863 52 AIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKID 117 (161)
T ss_pred EEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCc
Confidence 999999999998877888899999999999997643 1 11234677788888888
No 171
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.80 E-value=4.1e-09 Score=100.20 Aligned_cols=101 Identities=20% Similarity=0.162 Sum_probs=71.2
Q ss_pred EEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEEEEE
Q 004467 24 VIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLI 103 (752)
Q Consensus 24 iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~inli 103 (752)
++|+.|+|||||+++|........ ...++.|.........+. ..+.++++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~---------------~~~~~~~~~~~~~~~~~~---------------~~~~~~~~ 50 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIV---------------SPVPGTTTDPVEYVWELG---------------PLGPVVLI 50 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcccccc---------------CCCCCcEECCeEEEEEec---------------CCCcEEEE
Confidence 589999999999999964322111 111234444444333332 25789999
Q ss_pred cCCCCcccHH-------HHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 104 DSPGHVDFSS-------EVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 104 DtPGh~df~~-------e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
||||+.++.. .+...++.+|++++|+|+..+.. ......++|.++++||+|
T Consensus 51 Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D 115 (163)
T cd00880 51 DTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKID 115 (163)
T ss_pred ECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccc
Confidence 9999887753 44567889999999999998765 234457889999999998
No 172
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.79 E-value=3.7e-09 Score=106.17 Aligned_cols=102 Identities=11% Similarity=0.107 Sum_probs=70.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhccee-ccceEEEEEeeccchhccccCCCCCCceE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITI-KSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
.|+++|+.++|||||+++++... .... + .-|+ ......+.+. +....
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~--~~~~------~----------~~t~~~~~~~~~~~~--------------~~~~~ 48 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDT--FEPK------Y----------RRTVEEMHRKEYEVG--------------GVSLT 48 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcc------C----------CCchhhheeEEEEEC--------------CEEEE
Confidence 37899999999999999996432 1110 0 0011 1111122332 12468
Q ss_pred EEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHH---HHhCCCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYA---SKFGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~---~~~~~p~~~~inkld 154 (752)
++|+||||+.+|.......++.+|++|+|+|+++.-. .+. ...++|.++++||+|
T Consensus 49 l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~D 115 (198)
T cd04147 49 LDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKAD 115 (198)
T ss_pred EEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccc
Confidence 9999999999998777778899999999999988643 111 124789999999998
No 173
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.79 E-value=4.7e-09 Score=103.61 Aligned_cols=105 Identities=16% Similarity=0.251 Sum_probs=68.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+..+|+|+|+.++|||||+++|...... .. +.+ ..|.|.... .|..
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~-~~-------~~~------~~~~t~~~~----~~~~--------------- 62 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKL-AR-------TSK------TPGRTQLIN----FFEV--------------- 62 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCc-cc-------ccC------CCCcceEEE----EEEe---------------
Confidence 56779999999999999999999643210 00 001 012232211 1220
Q ss_pred ceEEEEEcCCCCc----------ccHHHHHHHHH---hhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHV----------DFSSEVTAALR---ITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~----------df~~e~~~~l~---~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
+..+.++||||+. +|...+...++ .+|++++|+|+..++. .++...++|+++++||+|
T Consensus 63 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D 140 (179)
T TIGR03598 63 NDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKAD 140 (179)
T ss_pred CCcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 1268999999963 34333333333 5689999999998655 556677899999999988
No 174
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.79 E-value=7.8e-09 Score=99.73 Aligned_cols=106 Identities=13% Similarity=0.213 Sum_probs=70.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
.|+++|..++|||||+++|....- .. ++ ...+..+.....+.+. ..+....+
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~--~~---------~~-----~~t~~~~~~~~~~~~~------------~~~~~~~~ 53 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIF--TK---------DY-----KKTIGVDFLEKQIFLR------------QSDEDVRL 53 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CC---------CC-----CCcEEEEEEEEEEEEc------------CCCCEEEE
Confidence 589999999999999999953210 00 00 0111111111112221 11246789
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHH-----HhCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYAS-----KFGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~-----~~~~p~~~~inkld 154 (752)
+|.||||+.+|..-....++.+|++++|+|+..... .+.. ..++|.+++.||+|
T Consensus 54 ~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~D 117 (162)
T cd04106 54 MLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKID 117 (162)
T ss_pred EEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChh
Confidence 999999999998888889999999999999987543 2221 13789888999998
No 175
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.78 E-value=5e-09 Score=101.18 Aligned_cols=104 Identities=14% Similarity=0.138 Sum_probs=68.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
.|+++|+.++|||||+++|+...-. + ..+...|.+..+.. +.+. +....+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~------------~--~~~~t~~~~~~~~~--v~~~--------------~~~~~~ 52 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFS------------E--NQESTIGAAFLTQT--VNLD--------------DTTVKF 52 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC------------C--CCCCccceeEEEEE--EEEC--------------CEEEEE
Confidence 5899999999999999999633210 0 00011111121111 1221 235789
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----H---HHHH---hCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----M---YASK---FGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~---~~~~---~~~p~~~~inkld 154 (752)
+++||||+..|.......++.+|++++|+|+...-. . .+.. .++|.++++||+|
T Consensus 53 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D 117 (163)
T cd01860 53 EIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKAD 117 (163)
T ss_pred EEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcc
Confidence 999999999988777778889999999999986643 1 1112 2466777788887
No 176
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.77 E-value=9.6e-09 Score=100.40 Aligned_cols=103 Identities=16% Similarity=0.181 Sum_probs=71.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+...|+++|+.|+|||||+++|.... .. .. ....|+++ ..+.+.
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~--~~----------~~---~~t~g~~~----~~i~~~---------------- 56 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASED--IS----------HI---TPTQGFNI----KTVQSD---------------- 56 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCC--Cc----------cc---CCCCCcce----EEEEEC----------------
Confidence 345679999999999999999994211 00 00 00112221 223332
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH------------HHHHHhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC------------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~------------~~~~~~~~p~~~~inkld 154 (752)
+..++++||||+..|...+...++.+|++++|+|+.+-.. ......++|.++++||+|
T Consensus 57 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 126 (173)
T cd04155 57 GFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQD 126 (173)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCC
Confidence 5789999999999998888888899999999999986322 111234688888889988
No 177
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.77 E-value=7.8e-09 Score=100.81 Aligned_cols=99 Identities=18% Similarity=0.167 Sum_probs=70.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
+|+++|..++|||||+++|... .... ..-|+......+.+. ++.+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~--~~~~-----------------~~~t~g~~~~~~~~~----------------~~~~ 45 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE--IPKK-----------------VAPTVGFTPTKLRLD----------------KYEV 45 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC--CCcc-----------------ccCcccceEEEEEEC----------------CEEE
Confidence 4899999999999999998521 1100 011222222233343 6899
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHH-------HhCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYAS-------KFGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~-------~~~~p~~~~inkld 154 (752)
+++||||+..|.......++.+|++|+|+|+...-. .+.. ..++|+++++||.|
T Consensus 46 ~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~D 111 (167)
T cd04161 46 CIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQD 111 (167)
T ss_pred EEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCC
Confidence 999999999998888888999999999999986422 1111 13789999999998
No 178
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.76 E-value=1.2e-08 Score=99.30 Aligned_cols=99 Identities=14% Similarity=0.151 Sum_probs=70.3
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEEE
Q 004467 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLIN 101 (752)
Q Consensus 22 i~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~in 101 (752)
|+++|..++|||||+.++....- ... + .-|+......+.+ ++..+.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~-~~~----------~-------~pt~g~~~~~i~~----------------~~~~l~ 47 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS-LES----------V-------VPTTGFNSVAIPT----------------QDAIME 47 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC-ccc----------c-------cccCCcceEEEee----------------CCeEEE
Confidence 68999999999999999963211 000 0 0121111222333 368999
Q ss_pred EEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHH-HhCCCHHHHHHHhh
Q 004467 102 LIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYAS-KFGVDESKMMERLW 154 (752)
Q Consensus 102 liDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~-~~~~p~~~~inkld 154 (752)
+.||||+.+|..-....++.+|++|+|+|++.... .+.. ..++|++++.||+|
T Consensus 48 i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~D 110 (164)
T cd04162 48 LLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQD 110 (164)
T ss_pred EEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcC
Confidence 99999999998888888999999999999987532 1221 24788899999998
No 179
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.76 E-value=1.6e-08 Score=97.55 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=71.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
+|+++|..++|||||+.+|+...- .+...+ ...|. . .....+ ++..+.+
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~--~~~~~~--~~~~~----------~---~~~~~~--------------~~~~~~~ 50 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF--VEDYEP--TKADS----------Y---RKKVVL--------------DGEDVQL 50 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--ccccCC--cchhh----------E---EEEEEE--------------CCEEEEE
Confidence 689999999999999999974321 110011 00110 0 001112 1235789
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHH---HhCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYAS---KFGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~---~~~~p~~~~inkld 154 (752)
.++||||+.+|.......++.+|++++|+|....-. .+.. ..++|.++++||+|
T Consensus 51 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D 116 (164)
T cd04139 51 NILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCD 116 (164)
T ss_pred EEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccc
Confidence 999999999999999999999999999999876432 2222 25799999999999
No 180
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.75 E-value=1.5e-08 Score=98.58 Aligned_cols=102 Identities=17% Similarity=0.156 Sum_probs=69.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
.|+++|+.++|||||+++|+... .... .. ...+ ..| ....+ ++..+.+
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~--~~~~-~~--~~~~--------~~~-----~~~~~--------------~~~~~~~ 49 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEE--FPEN-VP--RVLP--------EIT-----IPADV--------------TPERVPT 49 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc--CCcc-CC--Cccc--------ceE-----eeeee--------------cCCeEEE
Confidence 58999999999999999997432 1110 00 0000 011 11111 1246889
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH------HH---HHH--hCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC------MY---ASK--FGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~------~~---~~~--~~~p~~~~inkld 154 (752)
+++||||+.++.......++.+|++++|+|+..... .+ .+. .++|++++.||+|
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~D 114 (166)
T cd01893 50 TIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSD 114 (166)
T ss_pred EEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchh
Confidence 999999999888778888899999999999987544 11 121 3688888899998
No 181
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.75 E-value=1.4e-08 Score=99.01 Aligned_cols=104 Identities=13% Similarity=0.155 Sum_probs=71.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
.|+++|..++|||||+++++... ... +...|+........+.. +++...+
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~--~~~----------------~~~~t~~~~~~~~~~~~------------~~~~~~l 51 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGE--FEK----------------KYVATLGVEVHPLDFHT------------NRGKIRF 51 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCC----------------CCCCceeeEEEEEEEEE------------CCEEEEE
Confidence 68999999999999999997321 111 00113322222233321 2246789
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHHHh-----CCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYASKF-----GVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~~~-----~~p~~~~inkld 154 (752)
.+.||||+.+|..-...-++.+|++|+|+|.+.+.. .+.... ++|.+++.||+|
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~D 115 (166)
T cd00877 52 NVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVD 115 (166)
T ss_pred EEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchh
Confidence 999999999887666667788999999999998755 122221 689988999998
No 182
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.73 E-value=9.6e-09 Score=99.42 Aligned_cols=104 Identities=14% Similarity=0.158 Sum_probs=68.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
+|+++|+.++|||||+++|+...- ... . ...++.+.....+.+ ++....+
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~-~~~--~-------------~~t~~~~~~~~~~~~--------------~~~~~~l 51 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRF-VSK--Y-------------LPTIGIDYGVKKVSV--------------RNKEVRV 51 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCC--C-------------CCccceeEEEEEEEE--------------CCeEEEE
Confidence 689999999999999999963221 000 0 000111111111222 1236799
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HH---HHH--------hCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MY---ASK--------FGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~---~~~--------~~~p~~~~inkld 154 (752)
+++||||+..|.......++.+|++|+|+|.+.... .+ ..+ .++|.+++.||.|
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 121 (168)
T cd04119 52 NFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121 (168)
T ss_pred EEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchh
Confidence 999999999888777777889999999999986432 11 111 3477788889888
No 183
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.73 E-value=9e-09 Score=98.97 Aligned_cols=104 Identities=13% Similarity=0.137 Sum_probs=69.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
+|+++|..++|||||+++|+...-.... . -|+........+.. .+....+
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~--~----------------~~~~~~~~~~~~~~------------~~~~~~~ 51 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKH--E----------------STTQASFFQKTVNI------------GGKRIDL 51 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCc--C----------------CccceeEEEEEEEE------------CCEEEEE
Confidence 6899999999999999999743211100 0 01111111111110 1234679
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHH---H---HhCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYA---S---KFGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~---~---~~~~p~~~~inkld 154 (752)
+++||||+..|.......++.+|++++|+|..++-. .+. . ..++|.+++.||+|
T Consensus 52 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D 116 (162)
T cd04123 52 AIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKID 116 (162)
T ss_pred EEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcc
Confidence 999999998888777777889999999999987653 111 1 12578888889888
No 184
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.73 E-value=1e-08 Score=99.48 Aligned_cols=103 Identities=14% Similarity=0.242 Sum_probs=67.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
+|+++|..++|||||+.+++... .. ++ +..... +.... .+.+ +++...+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~--~~----~~--~~~t~~-------~~~~~--~~~~--------------~~~~~~~ 49 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FI----GE--YDPNLE-------SLYSR--QVTI--------------DGEQVSL 49 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc--cc----cc--cCCChH-------HhceE--EEEE--------------CCEEEEE
Confidence 48999999999999999996311 11 10 001000 11111 1112 1235678
Q ss_pred EEEcCCCCcc-cHHHHHHHHHhhcceEEEEecchhHH--------HHHH-----HhCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVD-FSSEVTAALRITDGALVVVDCIEGVC--------MYAS-----KFGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~d-f~~e~~~~l~~~D~avlvvda~~Gv~--------~~~~-----~~~~p~~~~inkld 154 (752)
+++||||+.. +.......++.+|++|+|+|+..... .... ..++|.+++.||+|
T Consensus 50 ~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 117 (165)
T cd04146 50 EILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKAD 117 (165)
T ss_pred EEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCc
Confidence 9999999985 45667888999999999999998743 1122 23688888889988
No 185
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.73 E-value=1.7e-08 Score=97.99 Aligned_cols=106 Identities=14% Similarity=0.172 Sum_probs=70.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
+.+|+++|..++|||||+++++...-.... .. .++.......+.+. +..+
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~--~~--------------t~~~~~~~~~~~~~--------------~~~~ 51 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESY--IS--------------TIGVDFKIRTIELD--------------GKTI 51 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCC--CC--------------ccceeEEEEEEEEC--------------CEEE
Confidence 457999999999999999999632110000 00 11111111122222 2356
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHH---H---hCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYAS---K---FGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~---~---~~~p~~~~inkld 154 (752)
.++++||||+.+|.......++.+|++|+|+|+..... .+.. . .++|.+++.||.|
T Consensus 52 ~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~D 118 (166)
T cd01869 52 KLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 118 (166)
T ss_pred EEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChh
Confidence 89999999999998888888899999999999987543 1221 2 2577788889888
No 186
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.73 E-value=7.9e-09 Score=99.17 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=70.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
+|+++|+.++|||||+++|+... ... ...+.. -......+.+. +..+.+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~---------~~~~~~------~~~~~~~~~~~--------------~~~~~~ 49 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVE---------EYDPTI------EDSYRKTIVVD--------------GETYTL 49 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCc---------CcCCCh------hHeEEEEEEEC--------------CEEEEE
Confidence 48999999999999999997432 111 000000 00111112221 225789
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHHH---hCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYASK---FGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~~---~~~p~~~~inkld 154 (752)
+++|+||+.++.......++.+|++++|+|....-. .+... .++|+++++||+|
T Consensus 50 ~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 115 (160)
T cd00876 50 DILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCD 115 (160)
T ss_pred EEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCc
Confidence 999999999999888889999999999999876532 12221 3688899999988
No 187
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.71 E-value=1.8e-08 Score=98.25 Aligned_cols=102 Identities=17% Similarity=0.206 Sum_probs=69.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccc-eEEEEEeeccchhccccCCCCCCceE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
+|+++|..++|||||++++.... ... .+.+ |+... ...+.+. +....
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~--~~~---------~~~~-------t~~~~~~~~~~~~--------------~~~~~ 50 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNV--FIE---------SYDP-------TIEDSYRKQVEID--------------GRQCD 50 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCc---------ccCC-------cchheEEEEEEEC--------------CEEEE
Confidence 58999999999999999996222 111 0000 11111 1112222 23578
Q ss_pred EEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HH---HHHhCCCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MY---ASKFGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~---~~~~~~p~~~~inkld 154 (752)
+.++||||+.+|.......++.+|++|+|+|...... .. ....++|.+++.||+|
T Consensus 51 ~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D 117 (168)
T cd04177 51 LEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKAD 117 (168)
T ss_pred EEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChh
Confidence 8999999999999888888999999999999887543 11 1123688888889888
No 188
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.71 E-value=2.1e-08 Score=96.34 Aligned_cols=102 Identities=20% Similarity=0.250 Sum_probs=68.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccc-eEEEEEeeccchhccccCCCCCCceE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
.|+++|..++|||||+++|+... ....... |+... ...+.+. +..+.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~--~~~~~~~----------------t~~~~~~~~~~~~--------------~~~~~ 50 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNH--FVDEYDP----------------TIEDSYRKQVVID--------------GETCL 50 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CcCCcCC----------------cchheEEEEEEEC--------------CEEEE
Confidence 58999999999999999997422 1110000 11100 1111221 23467
Q ss_pred EEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHH---HHhCCCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYA---SKFGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~---~~~~~p~~~~inkld 154 (752)
++++||||+..|..-....++.+|++++|+|...... .+. ...++|.+++.||+|
T Consensus 51 ~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~D 117 (162)
T cd04138 51 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCD 117 (162)
T ss_pred EEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 8999999999998888888999999999999885432 111 123688888889988
No 189
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.71 E-value=1.1e-08 Score=99.49 Aligned_cols=106 Identities=17% Similarity=0.188 Sum_probs=71.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
+.+|+++|..++|||||++++.... ... . + ...+++......+.+. +...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~--f~~--~----~--------~~t~~~~~~~~~~~~~--------------~~~~ 52 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDS--FNP--S----F--------ISTIGIDFKIRTIELD--------------GKKI 52 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCc--CCc--c----c--------ccCccceEEEEEEEEC--------------CEEE
Confidence 5689999999999999999996321 111 0 0 0011111111122332 2356
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HH---HHH---hCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MY---ASK---FGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~---~~~---~~~p~~~~inkld 154 (752)
.+++.||||+.+|.......++.+|++|+|+|+..+.. .+ ... .++|.+++.||+|
T Consensus 53 ~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D 119 (167)
T cd01867 53 KLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCD 119 (167)
T ss_pred EEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcc
Confidence 88999999999998888888899999999999987654 11 111 3577788889888
No 190
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.71 E-value=2.3e-08 Score=96.92 Aligned_cols=102 Identities=18% Similarity=0.229 Sum_probs=69.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccce-EEEEEeeccchhccccCCCCCCceE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
.|+++|..++|||||+.+++. |....... .|+.... ..+.. ++..+.
T Consensus 3 ki~~~G~~~~GKTsli~~~~~--~~~~~~~~----------------~t~~~~~~~~~~~--------------~~~~~~ 50 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQ--GIFVEKYD----------------PTIEDSYRKQVEV--------------DGQQCM 50 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh--CCCCcccC----------------CcchheEEEEEEE--------------CCEEEE
Confidence 589999999999999999973 22211001 1111111 11222 123678
Q ss_pred EEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHH---HHhCCCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYA---SKFGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~---~~~~~p~~~~inkld 154 (752)
+++.||||+..|..-....++.+|++++|+|...... ... ...++|.+++.||+|
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 117 (164)
T cd04175 51 LEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 117 (164)
T ss_pred EEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCc
Confidence 8999999999999888888999999999999876433 111 123578888889988
No 191
>PLN03118 Rab family protein; Provisional
Probab=98.70 E-value=1.5e-08 Score=102.77 Aligned_cols=105 Identities=15% Similarity=0.195 Sum_probs=70.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
...|+|+|+.++|||||+.+|+... +.. .. ..++.......+.+. +..+
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~--~~~--~~-------------~t~~~~~~~~~~~~~--------------~~~~ 62 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSS--VED--LA-------------PTIGVDFKIKQLTVG--------------GKRL 62 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC--CCC--cC-------------CCceeEEEEEEEEEC--------------CEEE
Confidence 3579999999999999999996432 111 00 011111112222232 2357
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----H-H---HH----HhCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----M-Y---AS----KFGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~-~---~~----~~~~p~~~~inkld 154 (752)
.++|+||||+.+|.......++.+|++|+|+|+..... . + .. ..++|.+++.||+|
T Consensus 63 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~D 131 (211)
T PLN03118 63 KLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVD 131 (211)
T ss_pred EEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 89999999999999888888999999999999997543 1 1 11 12456777778887
No 192
>PTZ00369 Ras-like protein; Provisional
Probab=98.69 E-value=1.5e-08 Score=101.03 Aligned_cols=104 Identities=19% Similarity=0.192 Sum_probs=70.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccce-EEEEEeeccchhccccCCCCCCc
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~-~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
.-+|+++|..++|||||+.+++...- ... + + .|+.... ..+.. ++..
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~--~~~------~-~---------~t~~~~~~~~~~~--------------~~~~ 52 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHF--IDE------Y-D---------PTIEDSYRKQCVI--------------DEET 52 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC--CcC------c-C---------CchhhEEEEEEEE--------------CCEE
Confidence 35799999999999999999964221 100 0 0 0111100 11112 1235
Q ss_pred eEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHH-------HhCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYAS-------KFGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~-------~~~~p~~~~inkld 154 (752)
+.+++.||||+.+|..-....++.+|++++|+|++.... .+.. ..++|.+++.||.|
T Consensus 53 ~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D 121 (189)
T PTZ00369 53 CLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCD 121 (189)
T ss_pred EEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 789999999999999888888999999999999987643 1111 12677888888887
No 193
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.69 E-value=5.2e-08 Score=97.71 Aligned_cols=84 Identities=20% Similarity=0.273 Sum_probs=60.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
+||+++|++|+|||||+++|+........ ...+|.|.........|. ++.
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~--------------~~~~~~T~~~~~~~~~~~----------------~~~ 50 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESK--------------LSASSVTKTCQKESAVWD----------------GRR 50 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccc--------------cCCCCcccccceeeEEEC----------------CeE
Confidence 68999999999999999999754432211 012356766666666664 789
Q ss_pred EEEEcCCCCcccH-------HHHHHHHH----hhcceEEEEecch
Q 004467 100 INLIDSPGHVDFS-------SEVTAALR----ITDGALVVVDCIE 133 (752)
Q Consensus 100 inliDtPGh~df~-------~e~~~~l~----~~D~avlvvda~~ 133 (752)
+++|||||..|+. .++.+.+. .+|++|+|+|+..
T Consensus 51 i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~ 95 (196)
T cd01852 51 VNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR 95 (196)
T ss_pred EEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC
Confidence 9999999987763 23444433 4699999999886
No 194
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.68 E-value=2.1e-08 Score=96.52 Aligned_cols=99 Identities=22% Similarity=0.125 Sum_probs=69.0
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEEE
Q 004467 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLIN 101 (752)
Q Consensus 22 i~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~in 101 (752)
|+++|..++|||||+++|....- .. . .-|+......+.+. ..+.++
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~~--~~----------~-------~~t~~~~~~~~~~~---------------~~~~l~ 47 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAEL--VT----------T-------IPTVGFNVEMLQLE---------------KHLSLT 47 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCc--cc----------c-------cCccCcceEEEEeC---------------CceEEE
Confidence 78999999999999999953211 00 0 00111111112222 257899
Q ss_pred EEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHH---HhCCCHHHHHHHhh
Q 004467 102 LIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYAS---KFGVDESKMMERLW 154 (752)
Q Consensus 102 liDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~---~~~~p~~~~inkld 154 (752)
+.||||+..|.......++.+|++|+|+|+.+... ...+ ..++|.+++.||.|
T Consensus 48 i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 112 (160)
T cd04156 48 VWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQD 112 (160)
T ss_pred EEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcc
Confidence 99999999888777778899999999999988743 1111 14789999999998
No 195
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.68 E-value=2.1e-08 Score=97.91 Aligned_cols=99 Identities=13% Similarity=0.015 Sum_probs=68.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
.|+++|..++|||||+.+|.... . .++ ..|+......+.+ ++..+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~--~----------~~~-------~~T~~~~~~~~~~----------------~~~~i 45 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE--F----------MQP-------IPTIGFNVETVEY----------------KNLKF 45 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC--C----------CCc-------CCcCceeEEEEEE----------------CCEEE
Confidence 37899999999999999995321 1 000 1122211222333 26899
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHHH---hCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYASK---FGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~~---~~~p~~~~inkld 154 (752)
+++||||+..|.......++.+|++++|+|++.--. .+.+. .+.|.+++.||+|
T Consensus 46 ~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D 111 (169)
T cd04158 46 TIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQD 111 (169)
T ss_pred EEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcC
Confidence 999999999998777788899999999999976421 12211 2378888889998
No 196
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.67 E-value=1.5e-08 Score=101.25 Aligned_cols=106 Identities=17% Similarity=0.269 Sum_probs=66.3
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~ 95 (752)
+...++|+++|+.++|||||+++|+.... +.. +.+ ..|.|..... +.
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~-~~~-------~~~------~~~~t~~~~~----~~--------------- 67 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKN-LAR-------TSK------TPGRTQLINF----FE--------------- 67 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCC-ccc-------ccC------CCCceeEEEE----Ee---------------
Confidence 35678999999999999999999964211 100 000 0122322111 11
Q ss_pred CceEEEEEcCCCCc----------ccHHHHHHHHH---hhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHV----------DFSSEVTAALR---ITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~----------df~~e~~~~l~---~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
.+..++|+||||+. .|..-+...++ .++++++|+|+..+.. .++...++|.+++.||+|
T Consensus 68 ~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~D 146 (196)
T PRK00454 68 VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKAD 146 (196)
T ss_pred cCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcc
Confidence 13589999999963 23222333344 4467888899876543 455667888888889888
No 197
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.67 E-value=1.2e-08 Score=95.79 Aligned_cols=101 Identities=20% Similarity=0.214 Sum_probs=71.2
Q ss_pred EEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEEEEE
Q 004467 24 VIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLI 103 (752)
Q Consensus 24 iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~inli 103 (752)
++|+.++|||||+++|........ ++..|. .......+.. ......++++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~-----------------~~~~t~-~~~~~~~~~~------------~~~~~~~~l~ 50 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPE-----------------EYETTI-IDFYSKTIEV------------DGKKVKLQIW 50 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCc-----------------ccccch-hheeeEEEEE------------CCEEEEEEEE
Confidence 589999999999999964433100 111222 2222222221 1136789999
Q ss_pred cCCCCcccHHHHHHHHHhhcceEEEEecchhHH------------HHHHHhCCCHHHHHHHhh
Q 004467 104 DSPGHVDFSSEVTAALRITDGALVVVDCIEGVC------------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 104 DtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~------------~~~~~~~~p~~~~inkld 154 (752)
||||+.++.......++.+|++++|+|+..+.. ......++|.++++||+|
T Consensus 51 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D 113 (157)
T cd00882 51 DTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKID 113 (157)
T ss_pred ecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccc
Confidence 999999998888888999999999999999865 122345788888999988
No 198
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.67 E-value=2e-08 Score=100.27 Aligned_cols=103 Identities=15% Similarity=0.092 Sum_probs=69.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEE--EEEeeccchhccccCCCCCCce
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGIS--LYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~--~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
.|+++|..++|||||+.++....-.... + -.|+...... +.+. +...
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~-------~----------~~t~~~~~~~~~~~~~--------------~~~~ 50 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGN-------F----------IATVGIDFRNKVVTVD--------------GVKV 50 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccC-------c----------CCcccceeEEEEEEEC--------------CEEE
Confidence 5899999999999999999532211100 0 0122111111 2221 2357
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH--------HHHHH---hCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--------MYASK---FGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~--------~~~~~---~~~p~~~~inkld 154 (752)
.++|.||||+..|.......++.+|++|+|+|+...-. ..+.+ .++|.+++.||+|
T Consensus 51 ~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~D 117 (191)
T cd04112 51 KLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKAD 117 (191)
T ss_pred EEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccc
Confidence 89999999999998777778889999999999986532 12222 2578888889988
No 199
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.64 E-value=3.2e-08 Score=96.19 Aligned_cols=103 Identities=17% Similarity=0.149 Sum_probs=69.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceE--EEEEeeccchhccccCCCCCCc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGI--SLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~--~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
.+|+++|+.++|||||+.++... ....... -|+..... .+.. ++..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~--~~~~~~~----------------~t~~~~~~~~~~~~--------------~~~~ 50 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEK--KFMADCP----------------HTIGVEFGTRIIEV--------------NGQK 50 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC--CCCCCCC----------------cccceeEEEEEEEE--------------CCEE
Confidence 57999999999999999999532 1111000 01111111 1112 2235
Q ss_pred eEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHH------HhCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYAS------KFGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~------~~~~p~~~~inkld 154 (752)
+.+.+.||||+..|.......++.+|++|+|+|...... .+.. ..+.|.+++.||+|
T Consensus 51 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~D 118 (166)
T cd04122 51 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKAD 118 (166)
T ss_pred EEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcc
Confidence 788999999999998888888999999999999997543 2222 12466777778887
No 200
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.63 E-value=2.6e-08 Score=97.35 Aligned_cols=100 Identities=21% Similarity=0.189 Sum_probs=65.3
Q ss_pred EEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEEEEE
Q 004467 24 VIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLI 103 (752)
Q Consensus 24 iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~inli 103 (752)
|+|+.++|||||+++|....-.+.. ..+.|+......+.+. .++.++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~----------------~~~~t~~~~~~~~~~~---------------~~~~~~i~ 49 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVAN----------------YPFTTLEPNLGVVEVP---------------DGARIQVA 49 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccC----------------CCceeecCcceEEEcC---------------CCCeEEEE
Confidence 5899999999999999543210000 1123443333333332 15789999
Q ss_pred cCCCCcc-------cHHHHHHHHHhhcceEEEEecchhH-------H-------HHHH----------HhCCCHHHHHHH
Q 004467 104 DSPGHVD-------FSSEVTAALRITDGALVVVDCIEGV-------C-------MYAS----------KFGVDESKMMER 152 (752)
Q Consensus 104 DtPGh~d-------f~~e~~~~l~~~D~avlvvda~~Gv-------~-------~~~~----------~~~~p~~~~ink 152 (752)
||||+.+ +..+..+.++.+|++++|+|+.... . .... ..++|.++++||
T Consensus 50 DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK 129 (176)
T cd01881 50 DIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNK 129 (176)
T ss_pred eccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEc
Confidence 9999743 3335566788899999999998761 1 0111 247889999999
Q ss_pred hh
Q 004467 153 LW 154 (752)
Q Consensus 153 ld 154 (752)
+|
T Consensus 130 ~D 131 (176)
T cd01881 130 ID 131 (176)
T ss_pred hh
Confidence 98
No 201
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.63 E-value=4.5e-08 Score=106.65 Aligned_cols=106 Identities=20% Similarity=0.220 Sum_probs=69.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
....|+++|++++|||||+++|.... .+..... +.|++.....+.+. ++
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~---------------~tT~d~~~~~i~~~---------------~~ 236 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAADQL---------------FATLDPTTRRLDLP---------------DG 236 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCC---------------ccccCCEEEEEEeC---------------CC
Confidence 44679999999999999999996432 1111111 23444433444443 25
Q ss_pred eEEEEEcCCCC-cccHH-------HHHHHHHhhcceEEEEecchhHH--------HHHHHh---CCCHHHHHHHhh
Q 004467 98 YLINLIDSPGH-VDFSS-------EVTAALRITDGALVVVDCIEGVC--------MYASKF---GVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh-~df~~-------e~~~~l~~~D~avlvvda~~Gv~--------~~~~~~---~~p~~~~inkld 154 (752)
..+.|+||||. .++.. .+...++.+|++|+|+|++.... .++... ++|.+++.||+|
T Consensus 237 ~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~D 312 (351)
T TIGR03156 237 GEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKID 312 (351)
T ss_pred ceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeec
Confidence 68999999997 32221 23335678999999999986532 233333 678899999999
No 202
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.62 E-value=4e-08 Score=95.92 Aligned_cols=101 Identities=15% Similarity=0.031 Sum_probs=69.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
..+|+++|+.++|||||+.+|.... . .+.. -|+......+.+ .+.
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~--~----------~~~~-------~t~g~~~~~~~~----------------~~~ 53 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQ--S----------VTTI-------PTVGFNVETVTY----------------KNV 53 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCC--C----------cccc-------CCcccceEEEEE----------------CCE
Confidence 4589999999999999999995211 0 0000 111111112223 268
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHH---HhCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYAS---KFGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~---~~~~p~~~~inkld 154 (752)
.+++.||||+..|.......++.+|++|+|+|++.-.. .... ..++|.+++.||+|
T Consensus 54 ~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D 121 (168)
T cd04149 54 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQD 121 (168)
T ss_pred EEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcC
Confidence 89999999999987766677899999999999997422 1111 13578888889988
No 203
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.62 E-value=4.6e-08 Score=94.35 Aligned_cols=102 Identities=16% Similarity=0.200 Sum_probs=67.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccc-eEEEEEeeccchhccccCCCCCCceE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
.|+++|..++|||||+.+++... ... ++. -|+... ...+... +....
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~--~~~---------~~~-------~t~~~~~~~~~~~~--------------~~~~~ 50 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQGI--FVE---------KYD-------PTIEDSYRKQIEVD--------------GQQCM 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCc---------ccC-------CchhhhEEEEEEEC--------------CEEEE
Confidence 68999999999999999997322 111 000 011100 0111121 23567
Q ss_pred EEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH--------HHHHH----hCCCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--------MYASK----FGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~--------~~~~~----~~~p~~~~inkld 154 (752)
+.|.||||+..|..-....++.+|++++|+|....-. ....+ .++|.+++.||+|
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 117 (163)
T cd04136 51 LEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCD 117 (163)
T ss_pred EEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 8899999999998766777889999999999886432 11221 3678888889988
No 204
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.62 E-value=3.9e-08 Score=95.48 Aligned_cols=102 Identities=14% Similarity=0.109 Sum_probs=68.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccce-EEEEEeeccchhccccCCCCCCceE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
.|+++|..++|||||+++++... ... . +.. |+.... ..+.+. .+...
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~--f~~--~----~~~----------t~~~~~~~~~~~~--------------~~~~~ 50 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGT--FRE--S----YIP----------TIEDTYRQVISCS--------------KNICT 50 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCC--C----cCC----------cchheEEEEEEEC--------------CEEEE
Confidence 48999999999999999996321 111 0 000 111000 011121 13578
Q ss_pred EEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH--------HHHHH------hCCCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--------MYASK------FGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~--------~~~~~------~~~p~~~~inkld 154 (752)
+++.||||+.+|..-...+++.+|++|+|+|...... .+... .++|.+++.||+|
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~D 119 (165)
T cd04140 51 LQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCD 119 (165)
T ss_pred EEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcc
Confidence 9999999999998777778899999999999987654 11222 3578888889988
No 205
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.61 E-value=4.1e-08 Score=81.93 Aligned_cols=71 Identities=35% Similarity=0.533 Sum_probs=58.4
Q ss_pred eEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eec
Q 004467 302 FAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLT 377 (752)
Q Consensus 302 v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~Gl~~~~~~tg-TL~ 377 (752)
++++||+||+|++||+|++++ +.+.. +....+|.+|+.+++....+++.+.||+++++.++++.+ +.| |||
T Consensus 3 v~~grV~sG~l~~gd~v~~~~-~~~~~---~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i-~~Gdtl~ 74 (74)
T PF03144_consen 3 VATGRVYSGTLKKGDKVRVLP-NGTGK---KGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAI-RRGDTLT 74 (74)
T ss_dssp EEEEEEEESEEETTEEEEEES-TTTTE---ECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCS-STTEEEE
T ss_pred EEEEEEEEeEEcCCCEEEECc-cCCcc---eeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCc-CcCCEEC
Confidence 899999999999999999976 42211 123479999999999999999999999999999999832 445 765
No 206
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.61 E-value=4.7e-08 Score=94.73 Aligned_cols=106 Identities=16% Similarity=0.166 Sum_probs=70.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
..+|+++|..++|||||+.+|+...-... + ...++.......+.+. +...
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-----------~-----~~t~~~~~~~~~~~~~--------------~~~~ 52 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLD-----------S-----KSTIGVEFATRSIQID--------------GKTI 52 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCC-----------C-----CCccceEEEEEEEEEC--------------CEEE
Confidence 35799999999999999999953211000 0 0111221122222222 2346
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHHH------hCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYASK------FGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~~------~~~p~~~~inkld 154 (752)
.++++||||+..|.......++.+|++|+|+|+.+.-. .+... .++|.+++.||.|
T Consensus 53 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~D 119 (165)
T cd01868 53 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSD 119 (165)
T ss_pred EEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcc
Confidence 78999999999888777788899999999999986433 22221 2578888889988
No 207
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.60 E-value=3e-08 Score=96.45 Aligned_cols=103 Identities=13% Similarity=0.073 Sum_probs=67.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
+|+++|..++|||||+++|+...- ... ... .........+.+ .+..+.+
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~-~~~-~~~---------------~~~~~~~~~~~~--------------~~~~~~l 50 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKF-PTE-YVP---------------TVFDNYSATVTV--------------DGKQVNL 50 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCC-CCC---------------ceeeeeEEEEEE--------------CCEEEEE
Confidence 688999999999999999964321 000 000 001111111122 1236789
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHHH--hCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYASK--FGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~~--~~~p~~~~inkld 154 (752)
.++||||+.+|.......++.+|++++|+|+..... ..... .++|.+++.||.|
T Consensus 51 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 115 (171)
T cd00157 51 GLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKID 115 (171)
T ss_pred EEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHH
Confidence 999999999886655566688999999999987433 11111 3589999999998
No 208
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.59 E-value=7.8e-08 Score=93.00 Aligned_cols=107 Identities=11% Similarity=0.106 Sum_probs=70.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
.|+++|..++|||||+.+|+......... . -.|+........+.. .++....+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~--------------~--~~t~~~~~~~~~~~~-----------~~~~~~~l 54 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKN--------------Y--LMTTGCDFVVKEVPV-----------DTDNTVEL 54 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcc--------------C--CCceEEEEEEEEEEe-----------CCCCEEEE
Confidence 58999999999999999996432111110 0 011111111111110 02346789
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHH---H--hCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYAS---K--FGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~---~--~~~p~~~~inkld 154 (752)
++.||||+..|..-....++.+|++++|+|.+.... .+.. . .++|.++++||.|
T Consensus 55 ~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~D 118 (164)
T cd04101 55 FIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMD 118 (164)
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 999999998888778888899999999999987632 2222 1 3588888899988
No 209
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.59 E-value=5.1e-08 Score=94.68 Aligned_cols=105 Identities=14% Similarity=0.180 Sum_probs=68.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
-+|+++|..++|||||+.+|+... ... . +.. .-|++.. ...+.. ++....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~--~~~--~----~~~------t~~~~~~--~~~~~~--------------~~~~~~ 51 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDS--FTS--A----FVS------TVGIDFK--VKTVFR--------------NDKRVK 51 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCC--C----CCC------ceeeEEE--EEEEEE--------------CCEEEE
Confidence 368999999999999999996321 100 0 000 0011111 111111 123578
Q ss_pred EEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHH---HH---hCCCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYA---SK---FGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~---~~---~~~p~~~~inkld 154 (752)
+.+.||||+.+|.......++.+|++++|+|....-. .+. .. .+.|.+++.||+|
T Consensus 52 ~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 117 (165)
T cd01865 52 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCD 117 (165)
T ss_pred EEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcc
Confidence 9999999999998888888899999999999986533 222 22 2467788889888
No 210
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.59 E-value=5.5e-08 Score=97.74 Aligned_cols=105 Identities=19% Similarity=0.202 Sum_probs=70.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceec--cceEEEEEeeccchhccccCCCCC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIK--STGISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~--s~~~~~~~~~~~~~~~~~~~~~~~ 95 (752)
....|+++|..++|||||+.+++... .. +. + ..|+. .....+.+. +
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~--~~----~~--~----------~~t~~~~~~~~~~~~~--------------~ 52 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNT--FS----GS--Y----------ITTIGVDFKIRTVEIN--------------G 52 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--CC----CC--c----------CccccceeEEEEEEEC--------------C
Confidence 46789999999999999999996321 10 00 0 01221 111222221 2
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHH-----HhCCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYAS-----KFGVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~-----~~~~p~~~~inkld 154 (752)
....++|+||||+..|.......++.+|++|+|+|++..-. .+.. .-.+|.+++.||+|
T Consensus 53 ~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~D 121 (199)
T cd04110 53 ERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKND 121 (199)
T ss_pred EEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 34678999999999998888888899999999999986543 1111 12467777888888
No 211
>PRK04213 GTP-binding protein; Provisional
Probab=98.59 E-value=6.7e-08 Score=97.12 Aligned_cols=102 Identities=20% Similarity=0.215 Sum_probs=66.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
....+|+++|+.++|||||+++|.... . ..+...|.|.... .+.+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~---~-------------~~~~~~~~t~~~~--~~~~----------------- 51 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKK---V-------------RVGKRPGVTRKPN--HYDW----------------- 51 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC---C-------------ccCCCCceeeCce--EEee-----------------
Confidence 345689999999999999999994211 0 0111235555432 2222
Q ss_pred ceEEEEEcCCCCcccH-----------HH----HHHHHHhhcceEEEEecchhH------------------HHHHHHhC
Q 004467 97 EYLINLIDSPGHVDFS-----------SE----VTAALRITDGALVVVDCIEGV------------------CMYASKFG 143 (752)
Q Consensus 97 ~~~inliDtPGh~df~-----------~e----~~~~l~~~D~avlvvda~~Gv------------------~~~~~~~~ 143 (752)
+ .++++||||+.++. .. +.+++..+|++++|+|+.... ...+...+
T Consensus 52 ~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 130 (201)
T PRK04213 52 G-DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELG 130 (201)
T ss_pred c-ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcC
Confidence 1 58999999963322 11 122456778999999996421 13445678
Q ss_pred CCHHHHHHHhh
Q 004467 144 VDESKMMERLW 154 (752)
Q Consensus 144 ~p~~~~inkld 154 (752)
+|.++++||+|
T Consensus 131 ~p~iiv~NK~D 141 (201)
T PRK04213 131 IPPIVAVNKMD 141 (201)
T ss_pred CCeEEEEECcc
Confidence 99999999998
No 212
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.58 E-value=6.4e-08 Score=97.21 Aligned_cols=104 Identities=13% Similarity=0.149 Sum_probs=66.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
.|+|+|..++|||||+.+++... .... +.+ .++.......+.+. +..+.+
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~--f~~~---------~~p-----t~~~~~~~~~i~~~--------------~~~~~l 51 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQE--FPEE---------YIP-----TEHRRLYRPAVVLS--------------GRVYDL 51 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCC--CCcc---------cCC-----ccccccceeEEEEC--------------CEEEEE
Confidence 58999999999999999996321 1100 000 00001111112232 235789
Q ss_pred EEEcCCCCcccHH----H----HHHHHHhhcceEEEEecchhHH-----H----HHH-----HhCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSS----E----VTAALRITDGALVVVDCIEGVC-----M----YAS-----KFGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~----e----~~~~l~~~D~avlvvda~~Gv~-----~----~~~-----~~~~p~~~~inkld 154 (752)
+|+||||+.+|.. + ...+++.+|++|+|+|++..-. . +.+ ..++|++++.||+|
T Consensus 52 ~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~D 127 (198)
T cd04142 52 HILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRD 127 (198)
T ss_pred EEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcc
Confidence 9999999876521 1 3456789999999999998743 1 111 24588899999999
No 213
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.57 E-value=2.7e-08 Score=97.33 Aligned_cols=102 Identities=20% Similarity=0.225 Sum_probs=68.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccc-eEEEEEeeccchhccccCCCCCCceE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
+|+++|+.++|||||+.+++... ....... |+... ...+.+ ++..+.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~--~~~~~~~----------------t~~~~~~~~~~~--------------~~~~~~ 49 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDA--FPEEYVP----------------TVFDHYAVSVTV--------------GGKQYL 49 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCCCCCC----------------ceeeeeEEEEEE--------------CCEEEE
Confidence 58999999999999999996432 1110000 11100 011112 123578
Q ss_pred EEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHH--HhCCCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYAS--KFGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~--~~~~p~~~~inkld 154 (752)
++++||||+.+|.......++.+|++|+|+|....-. .... ..++|.+++.||+|
T Consensus 50 ~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~D 115 (174)
T cd04135 50 LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQID 115 (174)
T ss_pred EEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchh
Confidence 8999999999987766667789999999999987632 1111 24788888899999
No 214
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.57 E-value=5.9e-08 Score=94.58 Aligned_cols=107 Identities=15% Similarity=0.121 Sum_probs=69.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
...+|+++|..++|||||+.+++.. .... +....++.......+.+ ++..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~--~~~~--------------~~~~~~~~~~~~~~~~~--------------~~~~ 53 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTN--KFDT--------------QLFHTIGVEFLNKDLEV--------------DGHF 53 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcC--CCCc--------------CcCCceeeEEEEEEEEE--------------CCeE
Confidence 4568999999999999999999631 1111 00001111111111222 2235
Q ss_pred eEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHH----H------HhCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYA----S------KFGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~----~------~~~~p~~~~inkld 154 (752)
..+.|.||||+..|.......++.+|++|+|+|...... .+. . ..++|.+++.||+|
T Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 125 (170)
T cd04116 54 VTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKND 125 (170)
T ss_pred EEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcc
Confidence 678899999999998877788899999999999886532 111 1 13477788889888
No 215
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.57 E-value=8.4e-08 Score=105.77 Aligned_cols=106 Identities=16% Similarity=0.115 Sum_probs=70.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
.+-.|+|+|.+++|||||+++|....-.++ ++ -+.|.......+.+. +.
T Consensus 158 ~iadValVG~PNaGKSTLln~Lt~~k~~vs----------~~------p~TT~~p~~Giv~~~---------------~~ 206 (390)
T PRK12298 158 LLADVGLLGLPNAGKSTFIRAVSAAKPKVA----------DY------PFTTLVPNLGVVRVD---------------DE 206 (390)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhCCccccc----------CC------CCCccCcEEEEEEeC---------------CC
Confidence 345799999999999999999963321111 11 023444444334443 23
Q ss_pred eEEEEEcCCCCcc-------cHHHHHHHHHhhcceEEEEecch----hH-H------HHHHH-----hCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE----GV-C------MYASK-----FGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~d-------f~~e~~~~l~~~D~avlvvda~~----Gv-~------~~~~~-----~~~p~~~~inkld 154 (752)
..|.|+||||... +...+.+.+..+|++++|||+.. .. . ..+.. .+.|.++++||+|
T Consensus 207 ~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiD 286 (390)
T PRK12298 207 RSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKID 286 (390)
T ss_pred cEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCc
Confidence 4699999999643 55667788999999999999871 11 1 22222 2578888999998
No 216
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.57 E-value=1.1e-07 Score=98.83 Aligned_cols=115 Identities=20% Similarity=0.198 Sum_probs=72.9
Q ss_pred HHHHhhcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhc
Q 004467 8 GLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALK 87 (752)
Q Consensus 8 ~~~~~~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~ 87 (752)
+|+++-.-.-..++|.|+|++|.|||||+.+|....--+ - .|--+ |-...+-+|.+
T Consensus 157 ~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEv-----A--~YPFT---------TK~i~vGhfe~-------- 212 (346)
T COG1084 157 HLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEV-----A--PYPFT---------TKGIHVGHFER-------- 212 (346)
T ss_pred HHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCcc-----C--CCCcc---------ccceeEeeeec--------
Confidence 344444333478999999999999999999993211111 0 11110 11122233333
Q ss_pred cccCCCCCCceEEEEEcCCCCcc--------cHHHHHHHHH-hhcceEEEEecchh--H--H-------HHHHHhCCCHH
Q 004467 88 SYKGERNGNEYLINLIDSPGHVD--------FSSEVTAALR-ITDGALVVVDCIEG--V--C-------MYASKFGVDES 147 (752)
Q Consensus 88 ~~~~~~~~~~~~inliDtPGh~d--------f~~e~~~~l~-~~D~avlvvda~~G--v--~-------~~~~~~~~p~~ 147 (752)
+..++.+|||||.-| --.+.+.||+ ..+.+++++|.++- . + ..-..++.|.+
T Consensus 213 --------~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v 284 (346)
T COG1084 213 --------GYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIV 284 (346)
T ss_pred --------CCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeE
Confidence 356999999999544 2346778887 55677889999863 2 2 22234678899
Q ss_pred HHHHHhh
Q 004467 148 KMMERLW 154 (752)
Q Consensus 148 ~~inkld 154 (752)
+|+||+|
T Consensus 285 ~V~nK~D 291 (346)
T COG1084 285 VVINKID 291 (346)
T ss_pred EEEeccc
Confidence 9999999
No 217
>PRK11058 GTPase HflX; Provisional
Probab=98.56 E-value=5.7e-08 Score=108.34 Aligned_cols=105 Identities=18% Similarity=0.129 Sum_probs=69.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
+..|+++|.+|+|||||+++|....-.+ .|. -+.|++.....+.+. +..
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v----------~~~------~~tTld~~~~~i~l~---------------~~~ 245 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYA----------ADQ------LFATLDPTLRRIDVA---------------DVG 245 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceee----------ccC------CCCCcCCceEEEEeC---------------CCC
Confidence 3579999999999999999995322111 111 123554444445553 134
Q ss_pred EEEEEcCCCCccc--------HHHHHHHHHhhcceEEEEecchhHH--------HHHHH---hCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGVC--------MYASK---FGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df--------~~e~~~~l~~~D~avlvvda~~Gv~--------~~~~~---~~~p~~~~inkld 154 (752)
.+.|+||||.... ...+...++.+|++|+|+|+++... .++.. .++|.+++.||+|
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiD 320 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKID 320 (426)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEccc
Confidence 7889999997432 1123445678999999999987532 22332 3688899999999
No 218
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.54 E-value=1.4e-07 Score=96.54 Aligned_cols=107 Identities=20% Similarity=0.177 Sum_probs=71.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+..+||++|.+|+|||||++.|+...-....+ -++ .|-..... ... .+
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~------K~~---------TTr~~ilg-i~t---------------s~ 118 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSR------KVH---------TTRHRILG-IIT---------------SG 118 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccc------ccc---------ceeeeeeE-EEe---------------cC
Confidence 357899999999999999999996332211111 111 11111111 111 14
Q ss_pred ceEEEEEcCCCCc------------ccHHHHHHHHHhhcceEEEEecchhHH-------HHHHH-hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHV------------DFSSEVTAALRITDGALVVVDCIEGVC-------MYASK-FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~------------df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~-~~~p~~~~inkld 154 (752)
++++.|.||||-+ .|..+...|+..||.+++|+||..--. ..+++ .++|-+.+.||+|
T Consensus 119 eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid 196 (379)
T KOG1423|consen 119 ETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKID 196 (379)
T ss_pred ceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchh
Confidence 7899999999922 255578899999999999999995211 22333 4689899999998
No 219
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.54 E-value=1.2e-07 Score=93.81 Aligned_cols=103 Identities=17% Similarity=0.074 Sum_probs=70.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
++...|+++|..++|||||+.+|.. +.... . .-|+......+.+ +
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~--~~~~~----------~-------~pt~g~~~~~~~~----------------~ 59 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKL--GEIVT----------T-------IPTIGFNVETVEY----------------K 59 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHcc--CCCcc----------c-------cCCcceeEEEEEE----------------C
Confidence 3446799999999999999999842 11110 0 0111111122333 2
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHHH---hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYASK---FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~~---~~~p~~~~inkld 154 (752)
+..+++.||||+..|..-...-.+.+|++|+|+|+++.-. .++.. .++|.+++.||+|
T Consensus 60 ~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~D 129 (181)
T PLN00223 60 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 129 (181)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCC
Confidence 6889999999998887766667889999999999996432 11111 2578888889998
No 220
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.54 E-value=1e-07 Score=92.12 Aligned_cols=99 Identities=16% Similarity=0.093 Sum_probs=66.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
.|+++|+.++|||||+.+|.. |. +.++. -|+......+.+ ....+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~--~~----------~~~~~-------pt~g~~~~~~~~----------------~~~~~ 46 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKL--GE----------IVTTI-------PTIGFNVETVEY----------------KNISF 46 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhc--CC----------CcccC-------CCCCcceEEEEE----------------CCEEE
Confidence 488999999999999999852 11 11111 111111112223 26789
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhH--H-------HHHHH---hCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV--C-------MYASK---FGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv--~-------~~~~~---~~~p~~~~inkld 154 (752)
+|.||||+..|..-.....+.+|++|+|+|++.-- . ..... .+.|.+++.||+|
T Consensus 47 ~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D 112 (159)
T cd04150 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQD 112 (159)
T ss_pred EEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCC
Confidence 99999999888776777789999999999997632 2 11111 2478888889988
No 221
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.54 E-value=1.5e-07 Score=93.78 Aligned_cols=101 Identities=15% Similarity=0.231 Sum_probs=67.4
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccc-eEEEEEeeccchhccccCCCCCCceEE
Q 004467 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 22 i~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
|+++|..++|||||+.+|.... ....... |+... ...+.+. +..+.+
T Consensus 2 i~ivG~~~vGKTsli~~l~~~~--f~~~~~~----------------t~~~~~~~~~~~~--------------~~~~~l 49 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCLNH--FVETYDP----------------TIEDSYRKQVVVD--------------GQPCML 49 (190)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCccCCC----------------chHhhEEEEEEEC--------------CEEEEE
Confidence 7899999999999999996321 1110011 11000 0111121 234678
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HH---HHH------hCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MY---ASK------FGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~---~~~------~~~p~~~~inkld 154 (752)
+|+||||+.+|.......++.+|++|+|+|.+..-. .+ ... .++|.+++.||.|
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~D 117 (190)
T cd04144 50 EVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCD 117 (190)
T ss_pred EEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChh
Confidence 999999999999888888999999999999987643 11 111 3577777788888
No 222
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.53 E-value=1.7e-07 Score=92.86 Aligned_cols=103 Identities=13% Similarity=0.072 Sum_probs=68.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEE-EEEeeccchhccccCCCCCCceE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGIS-LYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
.|+++|..++|||||+.+|+... ... . + --|+...... +... ++....
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~--~~~--~----~----------~~t~~~~~~~~i~~~-------------~~~~~~ 50 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGK--FPE--E----Y----------VPTVFENYVTNIQGP-------------NGKIIE 50 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCc--CCC--C----C----------CCeeeeeeEEEEEec-------------CCcEEE
Confidence 68999999999999999996321 110 0 0 0121111111 1110 123568
Q ss_pred EEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH------HHHHH-----hCCCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC------MYASK-----FGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~------~~~~~-----~~~p~~~~inkld 154 (752)
+.+.||||+.+|.......++.+|++|+|+|++.... .+... .++|.+++.||.|
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 116 (187)
T cd04132 51 LALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTD 116 (187)
T ss_pred EEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChh
Confidence 9999999999988766667789999999999987543 12211 2688888889988
No 223
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.53 E-value=5.2e-08 Score=95.07 Aligned_cols=104 Identities=14% Similarity=0.203 Sum_probs=72.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCcc-ccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ-EVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~-~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~ 95 (752)
+..--||++|+.++|||||+++|....+.... ...| .|..... |.+.
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPG---------------rTq~iNf--f~~~--------------- 69 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPG---------------RTQLINF--FEVD--------------- 69 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCC---------------ccceeEE--EEec---------------
Confidence 45668999999999999999999654332111 1133 3443332 3443
Q ss_pred CceEEEEEcCCCCc-------------ccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHV-------------DFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~-------------df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
..+.|+|-||+- +++.+-+..=....+++++||+..++. .++...++|.++++||+|
T Consensus 70 --~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~D 146 (200)
T COG0218 70 --DELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKAD 146 (200)
T ss_pred --CcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccc
Confidence 247899999952 222222222235789999999999987 888999999999999999
No 224
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.53 E-value=1.4e-07 Score=92.79 Aligned_cols=101 Identities=16% Similarity=0.075 Sum_probs=69.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
...|+++|..++|||||+.+|.. |+ +.++. -|+......+.+. ..
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~----------~~--~~~~~-------~t~~~~~~~~~~~----------------~~ 57 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKL----------GE--SVTTI-------PTIGFNVETVTYK----------------NI 57 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc----------CC--CCCcC-------CccccceEEEEEC----------------CE
Confidence 35699999999999999999952 11 11110 1222222222332 67
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchh--HH-------HHHH---HhCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG--VC-------MYAS---KFGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~G--v~-------~~~~---~~~~p~~~~inkld 154 (752)
.+.+.||||+..|......-++.+|++|+|+|++.- .. .... ..++|.+++.||.|
T Consensus 58 ~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~D 125 (175)
T smart00177 58 SFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQD 125 (175)
T ss_pred EEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcC
Confidence 899999999999987767778999999999999753 22 1111 12578888889988
No 225
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.53 E-value=1.3e-07 Score=91.35 Aligned_cols=102 Identities=18% Similarity=0.195 Sum_probs=68.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceec-cceEEEEEeeccchhccccCCCCCCceE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIK-STGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
+|+++|..++|||||+.+++. |........ |+. .....+.. ++....
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~--~~~~~~~~~----------------t~~~~~~~~~~~--------------~~~~~~ 50 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVS--GTFIEKYDP----------------TIEDFYRKEIEV--------------DSSPSV 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHc--CCCCCCCCC----------------chhheEEEEEEE--------------CCEEEE
Confidence 689999999999999999863 222110000 110 00011111 123467
Q ss_pred EEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----H---HHHH----hCCCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----M---YASK----FGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~---~~~~----~~~p~~~~inkld 154 (752)
+.|.||||+..|..-....++.+|++|+|+|.++... . .... .++|.+++.||+|
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~D 117 (163)
T cd04176 51 LEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVD 117 (163)
T ss_pred EEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 8899999999998777777889999999999987643 1 1111 4688888889988
No 226
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.52 E-value=7.1e-08 Score=97.07 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=69.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccc--eEEEEEeeccchhccccCCCCCCce
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST--GISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~--~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
+|+++|..++|||||+.+|+... .... + .-|+... ...+.+. ++..+
T Consensus 2 KivivG~~~vGKTsli~~l~~~~--~~~~---------~-------~~t~~~d~~~~~v~~~-------------~~~~~ 50 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGI--FSQH---------Y-------KATIGVDFALKVIEWD-------------PNTVV 50 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCCC---------C-------CCceeEEEEEEEEEEC-------------CCCEE
Confidence 58999999999999999996421 1110 0 0122111 1112221 13467
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHH---H-------HhCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYA---S-------KFGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~---~-------~~~~p~~~~inkld 154 (752)
.++|.||||+..|..-....++.+|++|+|+|.+.... .+. . ..++|.+++.||.|
T Consensus 51 ~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~D 121 (201)
T cd04107 51 RLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCD 121 (201)
T ss_pred EEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCC
Confidence 89999999999998777778899999999999986533 111 1 13578888889888
No 227
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.51 E-value=1.1e-07 Score=103.51 Aligned_cols=104 Identities=19% Similarity=0.233 Sum_probs=77.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
-.++|+|.+|+|||||.|+|+.....|.....|+ |.+.--..+.. +++.
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GT---------------TRDviee~i~i----------------~G~p 266 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGT---------------TRDVIEEDINL----------------NGIP 266 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceEecCCCCC---------------ccceEEEEEEE----------------CCEE
Confidence 4799999999999999999998887776655663 44443344444 3899
Q ss_pred EEEEcCCCCc---ccHHH-----HHHHHHhhcceEEEEecchhHH-----HHH-HHhCCCHHHHHHHhh
Q 004467 100 INLIDSPGHV---DFSSE-----VTAALRITDGALVVVDCIEGVC-----MYA-SKFGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~---df~~e-----~~~~l~~~D~avlvvda~~Gv~-----~~~-~~~~~p~~~~inkld 154 (752)
+.|+||.|.. |.+.. ...++..||.+++|+|+.++.. .+. ...+.|+++++||.|
T Consensus 267 v~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~D 335 (454)
T COG0486 267 VRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKAD 335 (454)
T ss_pred EEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechh
Confidence 9999999954 44422 3345678999999999999643 222 355678899999999
No 228
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.51 E-value=3.1e-08 Score=90.51 Aligned_cols=87 Identities=23% Similarity=0.284 Sum_probs=57.2
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEEE
Q 004467 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLIN 101 (752)
Q Consensus 22 i~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~in 101 (752)
|.++|+.++|||||+++|+..... +....+...+.++..... .+. .....+.
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~------------~~~~~~~~~~~~~~~~~~--~~~--------------~~~~~~~ 53 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP------------DNSVPEETSEITIGVDVI--VVD--------------GDRQSLQ 53 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--------------------SSTTSCEEEEEE--EET--------------TEEEEEE
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc------------ccccccccCCCcEEEEEE--Eec--------------CCceEEE
Confidence 789999999999999999754432 001111111233322211 111 1245689
Q ss_pred EEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH
Q 004467 102 LIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136 (752)
Q Consensus 102 liDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~ 136 (752)
+.|++|...|.......+..+|++++|+|..+.-.
T Consensus 54 ~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s 88 (119)
T PF08477_consen 54 FWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPES 88 (119)
T ss_dssp EEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHH
T ss_pred EEecCccceecccccchhhcCcEEEEEEcCCChHH
Confidence 99999998888766666999999999999998654
No 229
>PLN03110 Rab GTPase; Provisional
Probab=98.50 E-value=1.5e-07 Score=95.94 Aligned_cols=108 Identities=16% Similarity=0.165 Sum_probs=72.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
+....|+++|+.++|||||+.+|+...-.. ++ ...+.+......+.+. +.
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~-----------~~-----~~t~g~~~~~~~v~~~--------------~~ 59 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCL-----------ES-----KSTIGVEFATRTLQVE--------------GK 59 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCC-----------CC-----CCceeEEEEEEEEEEC--------------CE
Confidence 356789999999999999999995321100 00 0011111111122221 23
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHH---HH---hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYA---SK---FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~---~~---~~~p~~~~inkld 154 (752)
...++|.||||+..|.......++.+|++|+|+|...... .+. .. .++|++++.||.|
T Consensus 60 ~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D 128 (216)
T PLN03110 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSD 128 (216)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChh
Confidence 5689999999999998888888899999999999976432 221 11 3678888889888
No 230
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.50 E-value=1.8e-07 Score=93.25 Aligned_cols=105 Identities=11% Similarity=0.101 Sum_probs=67.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
.|+++|..++|||||+.+|+...-.... +. -|+......-.+. .++....+
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~-------~~----------~t~~~~~~~~~~~------------~~~~~~~l 52 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGP-------YQ----------NTIGAAFVAKRMV------------VGERVVTL 52 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcC-------cc----------cceeeEEEEEEEE------------ECCEEEEE
Confidence 5899999999999999999642211000 00 0222111111111 11235678
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHH---H--hCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYAS---K--FGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~---~--~~~p~~~~inkld 154 (752)
++.||||...|..-....++.+|++|+|+|.+.... .+.. . .++|++++.||+|
T Consensus 53 ~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~D 116 (193)
T cd04118 53 GIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSD 116 (193)
T ss_pred EEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccc
Confidence 899999998886655566778999999999986533 1222 1 2688888899988
No 231
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.49 E-value=4e-08 Score=95.88 Aligned_cols=104 Identities=20% Similarity=0.249 Sum_probs=63.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
+-++|.|+|+.|+|||+|.-.|.+..- .. |..|-.-...+.. .+...
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~------~~----------------T~tS~e~n~~~~~-----------~~~~~ 48 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKT------VP----------------TVTSMENNIAYNV-----------NNSKG 48 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS-------------------------B---SSEEEECCG-----------SSTCG
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCc------CC----------------eeccccCCceEEe-----------ecCCC
Confidence 346899999999999999999975411 11 1111111112210 11234
Q ss_pred eEEEEEcCCCCcccHHHHHHH---HHhhcceEEEEecchhHH-----------HHH----HHhCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDFSSEVTAA---LRITDGALVVVDCIEGVC-----------MYA----SKFGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~---l~~~D~avlvvda~~Gv~-----------~~~----~~~~~p~~~~inkld 154 (752)
..+.+||+|||..+-...... +..+-+.|+|||++.-.. .+. ...++|+++++||.|
T Consensus 49 ~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~D 123 (181)
T PF09439_consen 49 KKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQD 123 (181)
T ss_dssp TCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TT
T ss_pred CEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcc
Confidence 578999999999998888877 889999999999985222 111 124677788888887
No 232
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.49 E-value=2.1e-07 Score=100.67 Aligned_cols=107 Identities=17% Similarity=0.128 Sum_probs=72.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
+-+-.|+|+|.+++|||||+++|....-. +.|+. +.|+....-.+.|. +
T Consensus 156 k~~adVglVG~PNaGKSTLln~ls~a~~~----------va~yp------fTT~~p~~G~v~~~---------------~ 204 (335)
T PRK12299 156 KLLADVGLVGLPNAGKSTLISAVSAAKPK----------IADYP------FTTLHPNLGVVRVD---------------D 204 (335)
T ss_pred cccCCEEEEcCCCCCHHHHHHHHHcCCCc----------cCCCC------CceeCceEEEEEeC---------------C
Confidence 34678999999999999999999532111 11110 23555555445553 2
Q ss_pred ceEEEEEcCCCCcc-------cHHHHHHHHHhhcceEEEEecchh--HH------HHHHH-----hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG--VC------MYASK-----FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~d-------f~~e~~~~l~~~D~avlvvda~~G--v~------~~~~~-----~~~p~~~~inkld 154 (752)
...+.++||||..+ +..+..+.+..+|++|+|||++.. .. ..+.. .+.|.++++||+|
T Consensus 205 ~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiD 282 (335)
T PRK12299 205 YKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKID 282 (335)
T ss_pred CcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcc
Confidence 56799999999643 455667778889999999999842 22 11222 3678899999998
No 233
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.48 E-value=2.1e-07 Score=91.61 Aligned_cols=117 Identities=15% Similarity=0.093 Sum_probs=71.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
....|+++|..++|||||+.++....- ... ... .++.+.....+.+..... ......+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~--~~~-~~~-------------t~~~~~~~~~~~~~~~~~----~~~~~~~~~ 62 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKF--NPK-FIT-------------TVGIDFREKRVVYNSSGP----GGTLGRGQR 62 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--Ccc-CCC-------------ccceEEEEEEEEEcCccc----cccccCCCE
Confidence 346789999999999999999953211 100 000 011111111122220000 000011345
Q ss_pred eEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHH---HH----hCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYA---SK----FGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~---~~----~~~p~~~~inkld 154 (752)
..+.|.||||+..|..-....++.+|++|+|+|+...-. .+. .. .+.|.+++.||+|
T Consensus 63 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D 131 (180)
T cd04127 63 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKAD 131 (180)
T ss_pred EEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCcc
Confidence 789999999999998888888999999999999987543 111 11 2567777789888
No 234
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.48 E-value=2.1e-07 Score=92.13 Aligned_cols=101 Identities=17% Similarity=0.104 Sum_probs=68.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
...|+++|..++|||||+.++.. |.. .++ + -|+......+.+ .++
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~--~~~----------~~~---~----~T~~~~~~~~~~----------------~~~ 61 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKL--GEV----------VTT---I----PTIGFNVETVEY----------------KNL 61 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc--CCc----------ccc---C----CccccceEEEEE----------------CCE
Confidence 35699999999999999999842 111 111 0 122111112233 268
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchh--HH-------HHHHH---hCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG--VC-------MYASK---FGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~G--v~-------~~~~~---~~~p~~~~inkld 154 (752)
.++++||||+..|.......++.+|++|+|+|++.- .. ..... .++|.+++.||.|
T Consensus 62 ~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~D 129 (182)
T PTZ00133 62 KFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQD 129 (182)
T ss_pred EEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCC
Confidence 999999999998887777788999999999999753 22 11111 2477888889988
No 235
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.48 E-value=2.3e-07 Score=100.20 Aligned_cols=107 Identities=16% Similarity=0.130 Sum_probs=70.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
+.+-.|+++|.+++|||||+++|....-.+ .++. ..|.....-.+.+. +
T Consensus 155 k~~adV~lvG~pnaGKSTLl~~lt~~~~~v----------a~y~------fTT~~p~ig~v~~~---------------~ 203 (329)
T TIGR02729 155 KLLADVGLVGLPNAGKSTLISAVSAAKPKI----------ADYP------FTTLVPNLGVVRVD---------------D 203 (329)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhcCCccc----------cCCC------CCccCCEEEEEEeC---------------C
Confidence 446789999999999999999995322111 1110 12333333334443 2
Q ss_pred ceEEEEEcCCCCcc-------cHHHHHHHHHhhcceEEEEecchh-----HH------HHHHH-----hCCCHHHHHHHh
Q 004467 97 EYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG-----VC------MYASK-----FGVDESKMMERL 153 (752)
Q Consensus 97 ~~~inliDtPGh~d-------f~~e~~~~l~~~D~avlvvda~~G-----v~------~~~~~-----~~~p~~~~inkl 153 (752)
.+.+.|+||||..+ +.....+.+..+|++|+|+|+... +. ..+.. .+.|.++++||+
T Consensus 204 ~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~ 283 (329)
T TIGR02729 204 GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKI 283 (329)
T ss_pred ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCc
Confidence 37899999999753 444566777889999999999853 22 11222 367888889998
Q ss_pred h
Q 004467 154 W 154 (752)
Q Consensus 154 d 154 (752)
|
T Consensus 284 D 284 (329)
T TIGR02729 284 D 284 (329)
T ss_pred c
Confidence 8
No 236
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.47 E-value=2.4e-07 Score=90.81 Aligned_cols=102 Identities=12% Similarity=0.188 Sum_probs=69.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccce-EEEEEeeccchhccccCCCCCCceE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
.|+++|..++|||||+.+++.. ..... - --|+.... ..+.+ ++..+.
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~--~f~~~--~--------------~~t~~~~~~~~~~~--------------~~~~~~ 51 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISH--SFPDY--H--------------DPTIEDAYKQQARI--------------DNEPAL 51 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhC--CCCCC--c--------------CCcccceEEEEEEE--------------CCEEEE
Confidence 6899999999999999998632 11110 0 01111100 01122 123578
Q ss_pred EEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH--------HHHH----HhCCCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--------MYAS----KFGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~--------~~~~----~~~~p~~~~inkld 154 (752)
++|+||||..+|..-....++.+|++|+|+|....-. .... ..++|.+++.||+|
T Consensus 52 l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~D 118 (172)
T cd04141 52 LDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVD 118 (172)
T ss_pred EEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChh
Confidence 9999999999998877788899999999999987644 1122 23688888889998
No 237
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.47 E-value=2.3e-07 Score=90.76 Aligned_cols=101 Identities=16% Similarity=0.116 Sum_probs=66.9
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccce-EEEEEeeccchhccccCCCCCCceEE
Q 004467 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 22 i~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
|+|+|..++|||||+.+++... ... .+.. |+.... ..+.+ ++..+.+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~--~~~------~~~~----------~~~~~~~~~~~~--------------~~~~~~~ 48 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA--FPE------DYVP----------TVFENYSADVEV--------------DGKPVEL 48 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC--CCC------CCCC----------cEEeeeeEEEEE--------------CCEEEEE
Confidence 5799999999999999996422 111 0000 111111 01111 1235679
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH------HHH---HH--hCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC------MYA---SK--FGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~------~~~---~~--~~~p~~~~inkld 154 (752)
.+.||||+.+|..-....++.+|++|+|+|.+..-. .+. .+ .++|++++.||+|
T Consensus 49 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 113 (174)
T smart00174 49 GLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLD 113 (174)
T ss_pred EEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChh
Confidence 999999999887766667789999999999986532 111 11 3789999999998
No 238
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.47 E-value=1.2e-07 Score=110.22 Aligned_cols=97 Identities=22% Similarity=0.239 Sum_probs=70.3
Q ss_pred eCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEEEEEcC
Q 004467 26 AHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDS 105 (752)
Q Consensus 26 ghvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~inliDt 105 (752)
|..|+|||||.++|.... .+ .+ + ..|+|++.....+.++ ++.++++||
T Consensus 1 G~pNvGKSSL~N~Ltg~~---~~--v~-----n------~pG~Tv~~~~~~i~~~----------------~~~i~lvDt 48 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN---QT--VG-----N------WPGVTVEKKEGKLGFQ----------------GEDIEIVDL 48 (591)
T ss_pred CCCCCCHHHHHHHHhCCC---Ce--ec-----C------CCCeEEEEEEEEEEEC----------------CeEEEEEEC
Confidence 789999999999994221 11 11 1 2478887766666664 678999999
Q ss_pred CCCcccHHH-----HHHH---HHhhcceEEEEecchhHH-----HHHHHhCCCHHHHHHHhh
Q 004467 106 PGHVDFSSE-----VTAA---LRITDGALVVVDCIEGVC-----MYASKFGVDESKMMERLW 154 (752)
Q Consensus 106 PGh~df~~e-----~~~~---l~~~D~avlvvda~~Gv~-----~~~~~~~~p~~~~inkld 154 (752)
||+.+|... +.+. ...+|++++|+|++..-. .+..+.++|.++++||+|
T Consensus 49 PG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler~l~l~~ql~~~~~PiIIVlNK~D 110 (591)
T TIGR00437 49 PGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLERNLYLTLQLLELGIPMILALNLVD 110 (591)
T ss_pred CCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchhhHHHHHHHHhcCCCEEEEEehhH
Confidence 999887542 2332 236899999999987432 444568999999999999
No 239
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.46 E-value=1.9e-07 Score=95.08 Aligned_cols=99 Identities=14% Similarity=0.127 Sum_probs=69.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
.|+++|..++|||||+.+++... +.+. --|+........|. .+.+
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~------------f~~~-------~~Tig~~~~~~~~~----------------~~~l 46 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERR------------FKDT-------VSTVGGAFYLKQWG----------------PYNI 46 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC------------CCCC-------CCccceEEEEEEee----------------EEEE
Confidence 58999999999999999996321 1000 01332222222332 6789
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHH--HhCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYAS--KFGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~--~~~~p~~~~inkld 154 (752)
+|.||||+..|..-.....+.+|++|+|+|++.--. .+.+ ..++|.+++.||.|
T Consensus 47 ~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~D 111 (220)
T cd04126 47 SIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLD 111 (220)
T ss_pred EEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcc
Confidence 999999999998777777889999999999997533 1111 13577888889999
No 240
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.46 E-value=2.6e-07 Score=90.35 Aligned_cols=104 Identities=16% Similarity=0.166 Sum_probs=68.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
.|+++|..++|||||+.+++... ... + + .-|+........+. .++..+.+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~--f~~----~--~----------~~t~~~~~~~~~~~------------~~~~~~~l 51 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV--FDK----N--Y----------KATIGVDFEMERFE------------ILGVPFSL 51 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCC----C--C----------CCceeeEEEEEEEE------------ECCEEEEE
Confidence 47899999999999999996421 111 0 0 11332222111121 12235789
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHH---HhC----CCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYAS---KFG----VDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~---~~~----~p~~~~inkld 154 (752)
+|.||||+..|..-....++.+|++|+|+|+...-. .+.. +.. .|.+++.||+|
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~D 117 (170)
T cd04108 52 QLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKD 117 (170)
T ss_pred EEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChh
Confidence 999999999998877788899999999999987322 2222 222 34567779888
No 241
>PLN03108 Rab family protein; Provisional
Probab=98.46 E-value=2.1e-07 Score=94.33 Aligned_cols=106 Identities=17% Similarity=0.140 Sum_probs=70.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccc--eEEEEEeeccchhccccCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST--GISLYYEMTDDALKSYKGERN 94 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~--~~~~~~~~~~~~~~~~~~~~~ 94 (752)
+...+|+++|..++|||||+++|+...-... . + .|+... ...+.+.
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~----~-----~---------~ti~~~~~~~~i~~~-------------- 51 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV----H-----D---------LTIGVEFGARMITID-------------- 51 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCC----C-----C---------CCccceEEEEEEEEC--------------
Confidence 3457899999999999999999963211000 0 0 111111 1112221
Q ss_pred CCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHH---HH---hCCCHHHHHHHhh
Q 004467 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYA---SK---FGVDESKMMERLW 154 (752)
Q Consensus 95 ~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~---~~---~~~p~~~~inkld 154 (752)
+....+++.||||+.+|.......++.+|++|+|+|++.... .+. .. .++|.+++.||.|
T Consensus 52 ~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~D 122 (210)
T PLN03108 52 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122 (210)
T ss_pred CEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcc
Confidence 234678999999999998888888889999999999987533 111 11 2567777778877
No 242
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.45 E-value=1.8e-07 Score=90.10 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=62.5
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEEE
Q 004467 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLIN 101 (752)
Q Consensus 22 i~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~in 101 (752)
|+++|+.++|||||++.|..... ... ..+ ..+.|... ..+.+ ...+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~-~~~-~~~------------~~~~t~~~--~~~~~-----------------~~~~~ 48 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKK-LAR-TSK------------TPGKTQLI--NFFNV-----------------NDKFR 48 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCc-eee-ecC------------CCCcceeE--EEEEc-----------------cCeEE
Confidence 78999999999999999963211 111 011 11222211 11122 23889
Q ss_pred EEcCCCCccc----------HHHHH---HHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 102 LIDSPGHVDF----------SSEVT---AALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 102 liDtPGh~df----------~~e~~---~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
++||||+.+. ...+. +....++++++|+|+..... .++...+.|.++++||+|
T Consensus 49 ~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D 121 (170)
T cd01876 49 LVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKAD 121 (170)
T ss_pred EecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchh
Confidence 9999998653 22122 22235678999999986532 666777888888889988
No 243
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.45 E-value=2.5e-07 Score=94.50 Aligned_cols=107 Identities=11% Similarity=0.077 Sum_probs=71.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
...+|+++|..++|||||+.+++... ... +..-|+........+.. +...
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~--f~~----------------~~~~tig~~~~~~~~~~------------~~~~ 61 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGE--FEK----------------KYEPTIGVEVHPLDFFT------------NCGK 61 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCC--CCC----------------ccCCccceeEEEEEEEE------------CCeE
Confidence 45689999999999999999986321 111 00112222222222221 1235
Q ss_pred eEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHH-----HhCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYAS-----KFGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~-----~~~~p~~~~inkld 154 (752)
..+++.||||+.+|..-.....+.+|++|+|+|.+..-. .+.. ..++|++++.||+|
T Consensus 62 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~D 128 (219)
T PLN03071 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (219)
T ss_pred EEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchh
Confidence 799999999999997555556789999999999997644 2211 13688888899998
No 244
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.43 E-value=2.3e-07 Score=93.25 Aligned_cols=100 Identities=14% Similarity=0.149 Sum_probs=70.4
Q ss_pred EeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEEEEEc
Q 004467 25 IAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLID 104 (752)
Q Consensus 25 ighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~inliD 104 (752)
+|..++|||||+.+++. |.... ++..|+........+.. +++...++|.|
T Consensus 1 vG~~~vGKTsLi~r~~~--~~f~~----------------~~~~Tig~~~~~~~~~~------------~~~~~~l~iwD 50 (200)
T smart00176 1 VGDGGTGKTTFVKRHLT--GEFEK----------------KYVATLGVEVHPLVFHT------------NRGPIRFNVWD 50 (200)
T ss_pred CCCCCCCHHHHHHHHhc--CCCCC----------------CCCCceeEEEEEEEEEE------------CCEEEEEEEEE
Confidence 58999999999999963 21111 11234433332233321 22467999999
Q ss_pred CCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HH---HHH--hCCCHHHHHHHhh
Q 004467 105 SPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MY---ASK--FGVDESKMMERLW 154 (752)
Q Consensus 105 tPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~---~~~--~~~p~~~~inkld 154 (752)
|||+..|..-....++.+|++|+|+|.+.... .+ +.+ .++|+++|.||+|
T Consensus 51 t~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~D 110 (200)
T smart00176 51 TAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVD 110 (200)
T ss_pred CCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 99999998888888999999999999998765 11 222 3688899999999
No 245
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.43 E-value=1.9e-07 Score=94.03 Aligned_cols=102 Identities=16% Similarity=0.185 Sum_probs=70.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccce--EEEEEeeccchhccccCCCCCCce
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG--ISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
.|+++|..++|||||+.++.+.. ... +...|+.... ..+.+. ++.+
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~--f~~----------------~~~~Ti~~~~~~~~i~~~--------------~~~v 49 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT--FCE----------------ACKSGVGVDFKIKTVELR--------------GKKI 49 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC--CCC----------------cCCCcceeEEEEEEEEEC--------------CEEE
Confidence 47899999999999999996321 111 0012222111 122222 2358
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH--------HHHHH---hCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--------MYASK---FGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~--------~~~~~---~~~p~~~~inkld 154 (752)
.+++.||+|+..|..-....++.+|++|+|+|.+..-. ...+. -++|.+++.||+|
T Consensus 50 ~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~D 116 (202)
T cd04120 50 RLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 116 (202)
T ss_pred EEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcc
Confidence 89999999999998877888899999999999998644 11222 2577888889988
No 246
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.42 E-value=3e-07 Score=103.33 Aligned_cols=106 Identities=17% Similarity=0.211 Sum_probs=71.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
+.+..|+++|.+++|||||+++|....-. +.|+ -+.|+......+.+.
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~akpk----------Iady------pfTTl~P~lGvv~~~---------------- 204 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAKPK----------IADY------PFTTLVPNLGVVQAG---------------- 204 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCCcc----------cccc------CcccccceEEEEEEC----------------
Confidence 45678999999999999999999532111 1121 134554444444453
Q ss_pred ceEEEEEcCCCCcc-------cHHHHHHHHHhhcceEEEEecch------hHH----------HHH----------HHhC
Q 004467 97 EYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE------GVC----------MYA----------SKFG 143 (752)
Q Consensus 97 ~~~inliDtPGh~d-------f~~e~~~~l~~~D~avlvvda~~------Gv~----------~~~----------~~~~ 143 (752)
+..+.|+||||..+ +..+..+.+..||++|+|||+.. .+. .+. ...+
T Consensus 205 ~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~ 284 (500)
T PRK12296 205 DTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAE 284 (500)
T ss_pred CeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcC
Confidence 57899999999643 23345667788999999999973 111 222 1236
Q ss_pred CCHHHHHHHhh
Q 004467 144 VDESKMMERLW 154 (752)
Q Consensus 144 ~p~~~~inkld 154 (752)
.|.++++||+|
T Consensus 285 kP~IVVlNKiD 295 (500)
T PRK12296 285 RPRLVVLNKID 295 (500)
T ss_pred CCEEEEEECcc
Confidence 78888889988
No 247
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.40 E-value=3.6e-07 Score=89.38 Aligned_cols=103 Identities=13% Similarity=0.082 Sum_probs=67.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccc-eEEEEEeeccchhccccCCCCCCce
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~-~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
+.|+|+|+.++|||||+.+++...- ..... -|+... ...+.+. ++..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~--~~~~~----------------~t~~~~~~~~~~~~--------------~~~~ 49 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF--PEVYV----------------PTVFENYVADIEVD--------------GKQV 49 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC--CCCCC----------------CccccceEEEEEEC--------------CEEE
Confidence 5799999999999999999964221 00000 011111 1112221 2356
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchh--HH----HHH---HH--hCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG--VC----MYA---SK--FGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~G--v~----~~~---~~--~~~p~~~~inkld 154 (752)
.+.+.||||+.+|..-....++.+|++++|.|...- .. .+. .. .++|.+++.||+|
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 116 (175)
T cd01870 50 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 116 (175)
T ss_pred EEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChh
Confidence 789999999998876555677899999999988732 22 111 11 3788888999998
No 248
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.40 E-value=5.7e-07 Score=87.84 Aligned_cols=106 Identities=18% Similarity=0.035 Sum_probs=71.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCc-cccCCCccccCCchhHhHhcceeccce--EEEEEeeccchhccccCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIA-QEVAGDVRMTDTRADEAERGITIKSTG--ISLYYEMTDDALKSYKGER 93 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~-~~~~g~~~~~D~~~~E~eRgiTi~s~~--~~~~~~~~~~~~~~~~~~~ 93 (752)
.++.+|+++|..++|||||+.+++.. ... ..-. -|+.... ..+.+.
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~--~f~~~~~~----------------~T~~~~~~~~~~~~~------------- 50 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGR--SFSLNAYS----------------PTIKPRYAVNTVEVY------------- 50 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCC--CCCcccCC----------------CccCcceEEEEEEEC-------------
Confidence 46789999999999999999999632 111 1000 0221111 112222
Q ss_pred CCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHHH----hCCCHHHHHHHhh
Q 004467 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYASK----FGVDESKMMERLW 154 (752)
Q Consensus 94 ~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~~----~~~p~~~~inkld 154 (752)
+....+++.||+|...|..-....++.+|++|+|+|+.+.-. .+... .++|.++++||.|
T Consensus 51 -~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~D 119 (169)
T cd01892 51 -GQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKAD 119 (169)
T ss_pred -CeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccc
Confidence 234678889999998887666666789999999999987533 22222 2688899999988
No 249
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.40 E-value=1.8e-07 Score=98.65 Aligned_cols=114 Identities=21% Similarity=0.260 Sum_probs=67.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
-||+++|+.|+|||||+++|+...- ... .+. .+....+..+.+++......+.+. +....
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~-~~~--~~~---~~~~~~~~~~T~~i~~~~~~i~~~--------------g~~~~ 64 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKL-IPS--DYP---PDPAEEHIDKTVEIKSSKAEIEEN--------------GVKLK 64 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCC-ccc--cCC---CCccccccCCceEEEEEEEEEEEC--------------CEEEE
Confidence 4899999999999999999954321 111 110 011112223333333333333332 23468
Q ss_pred EEEEcCCCCcccHHH---------------------HHHHHH-------hhcceEEEEecch-hHH-------HHHHHhC
Q 004467 100 INLIDSPGHVDFSSE---------------------VTAALR-------ITDGALVVVDCIE-GVC-------MYASKFG 143 (752)
Q Consensus 100 inliDtPGh~df~~e---------------------~~~~l~-------~~D~avlvvda~~-Gv~-------~~~~~~~ 143 (752)
++++||||..|+..+ -....+ .+|++++++++.. |+. +.+.. +
T Consensus 65 l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~ 143 (276)
T cd01850 65 LTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-R 143 (276)
T ss_pred EEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-c
Confidence 999999998776431 111112 3788999999874 543 22232 6
Q ss_pred CCHHHHHHHhh
Q 004467 144 VDESKMMERLW 154 (752)
Q Consensus 144 ~p~~~~inkld 154 (752)
+|+++++||+|
T Consensus 144 v~vi~VinK~D 154 (276)
T cd01850 144 VNIIPVIAKAD 154 (276)
T ss_pred CCEEEEEECCC
Confidence 88888889887
No 250
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.39 E-value=2.5e-07 Score=93.95 Aligned_cols=87 Identities=25% Similarity=0.293 Sum_probs=58.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
.+|+++|..++|||||+++|+... ... .. + -|+........+.. .++..+.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~--~~~--~~-----~---------~ti~~d~~~~~i~~-----------~~~~~~~ 53 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGR--FAE--VS-----D---------PTVGVDFFSRLIEI-----------EPGVRIK 53 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCC--CC-----C---------ceeceEEEEEEEEE-----------CCCCEEE
Confidence 479999999999999999996321 111 00 0 12211111111110 0123578
Q ss_pred EEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhH
Q 004467 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv 135 (752)
+++.||||+..|.......++.+|++|+|+|.+..-
T Consensus 54 l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~ 89 (211)
T cd04111 54 LQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRE 89 (211)
T ss_pred EEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHH
Confidence 999999999998877777889999999999998753
No 251
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.37 E-value=2.8e-07 Score=91.62 Aligned_cols=104 Identities=19% Similarity=0.273 Sum_probs=67.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
.|+++|..++|||||+.+++... ... .+ ...-|.+.. ...+... +..+.+
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~--~~~---------~~---~~t~~~~~~--~~~~~~~--------------~~~~~~ 51 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDE--FSE---------ST---KSTIGVDFK--IKTVYIE--------------NKIIKL 51 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCC---------CC---CCceeeEEE--EEEEEEC--------------CEEEEE
Confidence 58999999999999999996221 110 00 000011111 1112221 235788
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HH---HHH---hCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MY---ASK---FGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~---~~~---~~~p~~~~inkld 154 (752)
.+.||||+.+|.......++.+|++|+|+|....-. .+ ... .++|.+++.||.|
T Consensus 52 ~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~D 116 (188)
T cd04125 52 QIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSD 116 (188)
T ss_pred EEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCC
Confidence 999999999998888888999999999999987544 11 111 2366677778877
No 252
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.37 E-value=6e-07 Score=99.67 Aligned_cols=106 Identities=13% Similarity=0.115 Sum_probs=69.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
-+.-|+++|.+++|||||+++|....-.+ .++ -+.|+......+.+. .+
T Consensus 157 ~~adVglVG~pNaGKSTLLn~Lt~ak~kI----------a~y------pfTTl~PnlG~v~~~---------------~~ 205 (424)
T PRK12297 157 LLADVGLVGFPNVGKSTLLSVVSNAKPKI----------ANY------HFTTLVPNLGVVETD---------------DG 205 (424)
T ss_pred ccCcEEEEcCCCCCHHHHHHHHHcCCCcc----------ccC------CcceeceEEEEEEEe---------------CC
Confidence 35589999999999999999995322111 111 023444433334443 25
Q ss_pred eEEEEEcCCCCcc-------cHHHHHHHHHhhcceEEEEecchh-----HH------HHHHH-----hCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG-----VC------MYASK-----FGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~d-------f~~e~~~~l~~~D~avlvvda~~G-----v~------~~~~~-----~~~p~~~~inkld 154 (752)
+.++|+||||... +..+..+.+..+|++|+|||++.. .. ..+.. .+.|.++++||+|
T Consensus 206 ~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~D 285 (424)
T PRK12297 206 RSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMD 285 (424)
T ss_pred ceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCC
Confidence 6899999999643 344566677789999999999632 22 12222 3688889999988
No 253
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.36 E-value=7.2e-07 Score=87.70 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=68.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccce-EEEEEeeccchhccccCCCCCCce
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~-~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
..|+++|..++|||||+.++++.. .... + -.|+.... ..+.+ ++..+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~--f~~~------~----------~pt~~~~~~~~~~~--------------~~~~~ 49 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK--FPSE------Y----------VPTVFDNYAVTVMI--------------GGEPY 49 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCCC------C----------CCceeeeeEEEEEE--------------CCEEE
Confidence 468999999999999999996421 1110 0 01221111 11222 12357
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH------HHH---HH--hCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC------MYA---SK--FGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~------~~~---~~--~~~p~~~~inkld 154 (752)
.++|.||||+.+|..-....++.+|++|+|+|.+..-. .+. .. -++|.+++.||+|
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~D 116 (175)
T cd01874 50 TLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 116 (175)
T ss_pred EEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHh
Confidence 89999999999997655667889999999999876533 122 11 2578888889988
No 254
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.35 E-value=5.2e-07 Score=91.86 Aligned_cols=103 Identities=11% Similarity=0.013 Sum_probs=66.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccce--EEEEEeeccchhccccCCCCCCce
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG--ISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
.|+++|..++|||||+.+|+... ... .+ .-|+.... ..+.+. +....
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~--~~~---------~~-------~~T~~~d~~~~~i~~~-------------~~~~~ 50 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEG--FGK---------SY-------KQTIGLDFFSKRVTLP-------------GNLNV 50 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC--CCC---------CC-------CCceeEEEEEEEEEeC-------------CCCEE
Confidence 48999999999999999995321 100 00 01222111 112221 11357
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH--------HHHHH------hCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--------MYASK------FGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~--------~~~~~------~~~p~~~~inkld 154 (752)
.++|.||||+..|..-...-++.+|++|+|+|++..-. ..+.+ .++|.+++.||+|
T Consensus 51 ~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~D 120 (215)
T cd04109 51 TLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTD 120 (215)
T ss_pred EEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcc
Confidence 89999999998887777777899999999999986432 11112 1245666778887
No 255
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=98.35 E-value=3.1e-06 Score=72.24 Aligned_cols=79 Identities=24% Similarity=0.346 Sum_probs=60.1
Q ss_pred CeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEE
Q 004467 284 PLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 363 (752)
Q Consensus 284 pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai 363 (752)
||+++|..++..+ .|. +..|||.+|++++||+|+++|.+ . ..+|..|.. ...++++|.|||.+++
T Consensus 1 p~r~~V~~v~~~~-~g~-vv~G~v~~G~i~~Gd~v~i~P~~----~-----~~~V~si~~----~~~~~~~a~aGd~v~~ 65 (83)
T cd03698 1 PFRLPISDKYKDQ-GGT-VVSGKVESGSIQKGDTLLVMPSK----E-----SVEVKSIYV----DDEEVDYAVAGENVRL 65 (83)
T ss_pred CeEEEEEeEEEcC-CCc-EEEEEEeeeEEeCCCEEEEeCCC----c-----EEEEEEEEE----CCeECCEECCCCEEEE
Confidence 6899999999877 675 88999999999999999998743 1 247777663 3477999999999985
Q ss_pred --eccccccccce-eec
Q 004467 364 --VGLDQFITKNA-TLT 377 (752)
Q Consensus 364 --~Gl~~~~~~tg-TL~ 377 (752)
.+++...++.| .|+
T Consensus 66 ~l~~~~~~~v~~G~vl~ 82 (83)
T cd03698 66 KLKGIDEEDISPGDVLC 82 (83)
T ss_pred EECCCCHHHCCCCCEEe
Confidence 45554334556 444
No 256
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.34 E-value=7.7e-07 Score=92.43 Aligned_cols=102 Identities=13% Similarity=0.145 Sum_probs=66.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceec-cceEEEEEeeccchhccccCCCCCCceE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIK-STGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
.|+++|..++|||||+.+++.. ..... + --|+. .....+.. ++..+.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~--~f~~~------y----------~pTi~d~~~k~~~i--------------~~~~~~ 49 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGG--RFEEQ------Y----------TPTIEDFHRKLYSI--------------RGEVYQ 49 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcC--CCCCC------C----------CCChhHhEEEEEEE--------------CCEEEE
Confidence 5899999999999999999632 11110 0 01111 01111112 223689
Q ss_pred EEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----H---HHHH------------hCCCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----M---YASK------------FGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~---~~~~------------~~~p~~~~inkld 154 (752)
++|.||+|+.+|..-....++.+|++|+|+|...... . .... .++|.+++.||+|
T Consensus 50 l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~D 124 (247)
T cd04143 50 LDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKAD 124 (247)
T ss_pred EEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECcc
Confidence 9999999999997655556788999999999986533 1 1111 2577888888887
No 257
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.33 E-value=6.2e-07 Score=89.30 Aligned_cols=108 Identities=18% Similarity=0.218 Sum_probs=70.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
+.+..|+++|..++|||||+.++... .... +-...++..-...++... +.
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~--~~~~--------------~~~~t~~~~~~~~~i~~~--------------~~ 53 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDG--STES--------------PYGYNMGIDYKTTTILLD--------------GR 53 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcC--CCCC--------------CCCCcceeEEEEEEEEEC--------------CE
Confidence 45678999999999999999998532 1111 000011111111112221 23
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----H---HHHH--hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----M---YASK--FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~---~~~~--~~~p~~~~inkld 154 (752)
.+.++|.||||+.+|..-.....+.+|++|+|+|.+..-. . .+.+ -++|.+++.||+|
T Consensus 54 ~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~D 121 (189)
T cd04121 54 RVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLH 121 (189)
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 5889999999999998766667789999999999987544 1 1121 3577777778887
No 258
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=98.33 E-value=3.1e-06 Score=73.58 Aligned_cols=85 Identities=20% Similarity=0.299 Sum_probs=65.4
Q ss_pred CCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEE
Q 004467 282 NGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTV 361 (752)
Q Consensus 282 ~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIv 361 (752)
+.||++.|.++|...+.|. ++.|||.+|+++.||+|+++|.+ . ..+|..|... ..++++|.|||.+
T Consensus 2 ~~p~r~~V~~vf~~~g~g~-vv~G~v~~G~i~~gd~v~i~P~~----~-----~~~V~sI~~~----~~~~~~a~aG~~v 67 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGT-VPVGRVETGVLKPGMVVTFAPAG----V-----TGEVKSVEMH----HEPLEEALPGDNV 67 (91)
T ss_pred CCCeEEEEEEEEEeCCceE-EEEEEEecceeecCCEEEECCCC----c-----EEEEEEEEEC----CcCcCEECCCCEE
Confidence 4689999999998777776 88999999999999999998743 1 2577777643 4568999999999
Q ss_pred EEe--ccccccccce-eeccCC
Q 004467 362 AMV--GLDQFITKNA-TLTNEK 380 (752)
Q Consensus 362 ai~--Gl~~~~~~tg-TL~~~~ 380 (752)
++. +++...++.| .||+++
T Consensus 68 ~i~l~~i~~~~v~~G~vl~~~~ 89 (91)
T cd03693 68 GFNVKNVSKKDIKRGDVAGDSK 89 (91)
T ss_pred EEEECCCCHHHcCCcCEEccCC
Confidence 874 6554445667 556543
No 259
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=9.2e-07 Score=96.13 Aligned_cols=93 Identities=19% Similarity=0.218 Sum_probs=71.2
Q ss_pred hcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCC
Q 004467 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGE 92 (752)
Q Consensus 13 ~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~ 92 (752)
++...+-.+|+|+|++|+|||||+|+|......|.....| .|-++--+.+..+
T Consensus 262 ~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~G---------------TTRDaiea~v~~~------------ 314 (531)
T KOG1191|consen 262 IERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPG---------------TTRDAIEAQVTVN------------ 314 (531)
T ss_pred HHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCC---------------cchhhheeEeecC------------
Confidence 3344456899999999999999999998888777666566 3555555556654
Q ss_pred CCCCceEEEEEcCCCCcc---------cHHHHHHHHHhhcceEEEEecchhHH
Q 004467 93 RNGNEYLINLIDSPGHVD---------FSSEVTAALRITDGALVVVDCIEGVC 136 (752)
Q Consensus 93 ~~~~~~~inliDtPGh~d---------f~~e~~~~l~~~D~avlvvda~~Gv~ 136 (752)
++.+.|+||.|... =+.....++..+|..++||||.++..
T Consensus 315 ----G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t 363 (531)
T KOG1191|consen 315 ----GVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDT 363 (531)
T ss_pred ----CeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEeccccccc
Confidence 89999999999765 12234557789999999999987755
No 260
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.27 E-value=1.5e-06 Score=88.40 Aligned_cols=106 Identities=12% Similarity=0.099 Sum_probs=69.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
...|+++|+.|+|||||+.+++. |..... ..-|+........+.. +.+..
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~--~~~~~~----------------~~~t~~~~~~~~~~~~------------~~~~i 58 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLT--GEFEKK----------------YIPTLGVEVHPLKFYT------------NCGPI 58 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHh--CCCCCC----------------CCCccceEEEEEEEEE------------CCeEE
Confidence 35799999999999999988753 222110 0112222222222221 22468
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHH-----HhCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYAS-----KFGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~-----~~~~p~~~~inkld 154 (752)
.+++.||||+.+|..-.....+.+|++++|+|.++... .+.. .-++|.+++.||+|
T Consensus 59 ~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~D 124 (215)
T PTZ00132 59 CFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVD 124 (215)
T ss_pred EEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 99999999999987666666778999999999997655 1111 12567666778888
No 261
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.26 E-value=9.9e-07 Score=86.34 Aligned_cols=102 Identities=14% Similarity=0.112 Sum_probs=66.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhccee-ccceEEEEEeeccchhccccCCCCCCceE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITI-KSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
.++++|..++|||||+.+++... ..... .. |+ +.-...+.. ++....
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~-~~~~~-~~----------------t~~~~~~~~~~~--------------~~~~~~ 49 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNG-YPTEY-VP----------------TAFDNFSVVVLV--------------DGKPVR 49 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CCCCC-CC----------------ceeeeeeEEEEE--------------CCEEEE
Confidence 47899999999999999885421 11110 00 11 000011112 123568
Q ss_pred EEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH------HHH---HH--hCCCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC------MYA---SK--FGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~------~~~---~~--~~~p~~~~inkld 154 (752)
+.++||||+..|..-....++.+|++|+|+|.+.--. .+. .. .++|.+++.||+|
T Consensus 50 ~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D 115 (173)
T cd04130 50 LQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQAD 115 (173)
T ss_pred EEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChh
Confidence 8999999998887666667789999999999887432 111 12 3588888899998
No 262
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.26 E-value=9.7e-07 Score=87.90 Aligned_cols=103 Identities=16% Similarity=0.183 Sum_probs=65.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceE-EEEEeeccchhccccCCCCCCce
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGI-SLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~-~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
|.|+++|..++|||||+.+++.. .... . + ..|+..... .+.. ++...
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~--~~~~--~-------~-------~~t~~~~~~~~i~~--------------~~~~~ 48 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRG--YFPQ--V-------Y-------EPTVFENYVHDIFV--------------DGLHI 48 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC--CCCC--c-------c-------CCcceeeeEEEEEE--------------CCEEE
Confidence 57899999999999999999632 1110 0 0 011111111 0111 12357
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH------HHHHH-----hCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC------MYASK-----FGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~------~~~~~-----~~~p~~~~inkld 154 (752)
.++|.||||+.+|..-.....+.+|++|+|.|.+.--. .+... .++|.+++.||.|
T Consensus 49 ~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~D 115 (189)
T cd04134 49 ELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCD 115 (189)
T ss_pred EEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChh
Confidence 89999999999886544556678999999988775422 12211 2678888889988
No 263
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.25 E-value=1.4e-06 Score=85.66 Aligned_cols=102 Identities=16% Similarity=0.122 Sum_probs=67.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccc-eEEEEEeeccchhccccCCCCCCceE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
.|+++|..++|||||+.+++.. ..... ...|+... ...+.. +++...
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~--~f~~~----------------~~~t~~~~~~~~~~~--------------~~~~~~ 50 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTN--AFPGE----------------YIPTVFDNYSANVMV--------------DGKPVN 50 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCCc----------------CCCcceeeeEEEEEE--------------CCEEEE
Confidence 5899999999999999999642 11110 01111110 001111 223578
Q ss_pred EEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH------HHHH---H--hCCCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC------MYAS---K--FGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~------~~~~---~--~~~p~~~~inkld 154 (752)
+++.||||+.+|..-....++.+|++|+|+|.+.--. .+.. . -++|.+++.||.|
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~D 116 (174)
T cd01871 51 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 116 (174)
T ss_pred EEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChh
Confidence 9999999999997766677889999999999986432 1111 1 2578888889998
No 264
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.24 E-value=5.9e-06 Score=69.33 Aligned_cols=78 Identities=28% Similarity=0.279 Sum_probs=58.4
Q ss_pred eEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEe
Q 004467 285 LMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 364 (752)
Q Consensus 285 l~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~ 364 (752)
+.++|++++.++..|. ++++||++|+|++||.+++.+.+ . ....++..|+... .+++++.|||++++.
T Consensus 1 ~~~~v~~~~~~~~~g~-v~~~rv~~G~l~~g~~v~~~~~~---~----~~~~~i~~i~~~~----~~~~~~~aG~~~~~~ 68 (83)
T cd01342 1 LRALVFKVFKDKGRGT-VATGRVESGTLKKGDKVRVGPGG---G----GVKGKVKSLKRFK----GEVDEAVAGDIVGIV 68 (83)
T ss_pred CeeEEEEEEEeCCceE-EEEEEEeeCEEecCCEEEEecCC---c----eeEEEEeEeEecC----ceeceecCCCEEEEE
Confidence 3578899888877675 99999999999999999987521 1 1236788887664 568999999999998
Q ss_pred ccccccccce
Q 004467 365 GLDQFITKNA 374 (752)
Q Consensus 365 Gl~~~~~~tg 374 (752)
+.+...++.|
T Consensus 69 ~~~~~~~~~g 78 (83)
T cd01342 69 LKDKDDIKIG 78 (83)
T ss_pred EccccccCCC
Confidence 7554222444
No 265
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.23 E-value=4.4e-06 Score=86.10 Aligned_cols=83 Identities=25% Similarity=0.318 Sum_probs=57.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
.|+++|.+++|||||+++|.... .. .+.. -+.|+......+.|. +..+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~---~~--v~~~-----------~~tT~~~~~g~~~~~----------------~~~i 49 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK---SE--VAAY-----------EFTTLTCVPGVLEYK----------------GAKI 49 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC---cc--ccCC-----------CCccccceEEEEEEC----------------CeEE
Confidence 48899999999999999995221 11 1110 012333223334453 6789
Q ss_pred EEEcCCCCcc-------cHHHHHHHHHhhcceEEEEecchhH
Q 004467 101 NLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGV 135 (752)
Q Consensus 101 nliDtPGh~d-------f~~e~~~~l~~~D~avlvvda~~Gv 135 (752)
+++||||+.+ +..++...++.+|+.++|+|+....
T Consensus 50 ~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~ 91 (233)
T cd01896 50 QLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPE 91 (233)
T ss_pred EEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcch
Confidence 9999999754 3456778899999999999998654
No 266
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.23 E-value=1.7e-06 Score=88.47 Aligned_cols=101 Identities=12% Similarity=0.117 Sum_probs=64.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhccee--ccceEEEEEeeccchhccccCCCCCCce
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITI--KSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi--~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
.|+++|..++|||||+.+++. |.... . .+ ..|+ .....++.+. +..+
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~--~~~~~---~-----~~-------~~t~~~~~~~~~i~~~--------------~~~~ 50 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTS--GEYDD---H-----AY-------DASGDDDTYERTVSVD--------------GEES 50 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhc--CCcCc---c-----Cc-------CCCccccceEEEEEEC--------------CEEE
Confidence 589999999999999999952 21110 0 00 0111 1111112221 2367
Q ss_pred EEEEEcCCCCcccHHHHHHHHH-hhcceEEEEecchhHH--------HHHHH----hCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALR-ITDGALVVVDCIEGVC--------MYASK----FGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~-~~D~avlvvda~~Gv~--------~~~~~----~~~p~~~~inkld 154 (752)
.++++||||+.++..+ ..++ .+|++++|+|++..-. ..+.. .++|.+++.||+|
T Consensus 51 ~l~i~Dt~G~~~~~~~--~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~D 117 (221)
T cd04148 51 TLVVIDHWEQEMWTED--SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSD 117 (221)
T ss_pred EEEEEeCCCcchHHHh--HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChh
Confidence 8999999999844333 3456 8999999999997633 12222 3689999999999
No 267
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.22 E-value=6.9e-06 Score=85.21 Aligned_cols=70 Identities=17% Similarity=0.224 Sum_probs=45.6
Q ss_pred hhcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccC
Q 004467 12 IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG 91 (752)
Q Consensus 12 ~~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~ 91 (752)
..+......||+++|+.|+|||||+++|+....... .++. +.|.........+.
T Consensus 24 ~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v---------~~~~------~~T~~~~~~~~~~~----------- 77 (249)
T cd01853 24 GKEELDFSLTILVLGKTGVGKSSTINSIFGERKAAT---------SAFQ------SETLRVREVSGTVD----------- 77 (249)
T ss_pred hhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCccc---------CCCC------CceEEEEEEEEEEC-----------
Confidence 344456678999999999999999999975432111 1111 12333333333343
Q ss_pred CCCCCceEEEEEcCCCCcccH
Q 004467 92 ERNGNEYLINLIDSPGHVDFS 112 (752)
Q Consensus 92 ~~~~~~~~inliDtPGh~df~ 112 (752)
+..+++|||||..+..
T Consensus 78 -----g~~i~vIDTPGl~~~~ 93 (249)
T cd01853 78 -----GFKLNIIDTPGLLESV 93 (249)
T ss_pred -----CeEEEEEECCCcCcch
Confidence 6789999999988773
No 268
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.18 E-value=2.5e-06 Score=82.55 Aligned_cols=102 Identities=17% Similarity=0.169 Sum_probs=66.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccce--EEEEEeeccchhccccCCCCCCce
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG--ISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
+|+++|..++|||||+.+++. |..... . .-|+.... ..+... +...
T Consensus 2 ki~vvG~~~~GKTsli~~~~~--~~~~~~-~---------------~~t~~~~~~~~~~~~~--------------~~~~ 49 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTD--NEFHSS-H---------------ISTIGVDFKMKTIEVD--------------GIKV 49 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhc--CCCCCC-C---------------CCceeeEEEEEEEEEC--------------CEEE
Confidence 589999999999999999852 211110 0 11222111 112221 2346
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHH---H---hCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYAS---K---FGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~---~---~~~p~~~~inkld 154 (752)
.+++.||||...|........+.+|++++|+|...--. .+.. . .++|.+++.||.|
T Consensus 50 ~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~D 116 (161)
T cd04117 50 RIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD 116 (161)
T ss_pred EEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcc
Confidence 78999999999998877888899999999999876432 1111 1 1466677778877
No 269
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.13 E-value=1.4e-06 Score=87.45 Aligned_cols=106 Identities=16% Similarity=0.083 Sum_probs=60.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
+|+++|..|+|||||+++|+...... .|.. .++. -..|... ..|. ......+
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~----~~~~-~~~~------~~~t~~~----~~~~-------------~~~~~~l 54 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEE----EGAA-PTGV------VETTMKR----TPYP-------------HPKFPNV 54 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCC----CCcc-ccCc------cccccCc----eeee-------------cCCCCCc
Confidence 69999999999999999996422100 1110 0000 0011111 0121 0113478
Q ss_pred EEEcCCCCcccHH---HHHH--HHHhhcceEEEEecchhHH-----HHHHHhCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSS---EVTA--ALRITDGALVVVDCIEGVC-----MYASKFGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~---e~~~--~l~~~D~avlvvda~~Gv~-----~~~~~~~~p~~~~inkld 154 (752)
.++||||..++.. +... ++..+|..++|.|..-.-. ..+++.+.|.++|.||+|
T Consensus 55 ~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~~~~~~d~~~~~~l~~~~~~~ilV~nK~D 118 (197)
T cd04104 55 TLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISSTRFSSNDVKLAKAIQCMGKKFYFVRTKVD 118 (197)
T ss_pred eEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCCCCCHHHHHHHHHHHHhCCCEEEEEeccc
Confidence 9999999765422 2222 2456788777765442111 555667889999999999
No 270
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.11 E-value=4.7e-06 Score=83.14 Aligned_cols=104 Identities=15% Similarity=0.065 Sum_probs=68.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
-.|+++|..++|||||+.++++.. .... .--|+.... ...+. .+++.+.
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~--f~~~----------------~~~t~~~~~-~~~~~------------~~~~~~~ 52 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNA--FPKE----------------YIPTVFDNY-SAQTA------------VDGRTVS 52 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC--CCcC----------------CCCceEeee-EEEEE------------ECCEEEE
Confidence 469999999999999999996421 1110 011221111 00111 1234678
Q ss_pred EEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH------HHHH-----HhCCCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC------MYAS-----KFGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~------~~~~-----~~~~p~~~~inkld 154 (752)
+++.||||+..|..-.....+.+|++|+|.|.+.--. .+.. .-++|++++.||.|
T Consensus 53 l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~D 118 (191)
T cd01875 53 LNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKD 118 (191)
T ss_pred EEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChh
Confidence 9999999999998665566789999999999876533 1221 13678888889988
No 271
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.07 E-value=3.8e-06 Score=86.26 Aligned_cols=57 Identities=16% Similarity=0.114 Sum_probs=41.7
Q ss_pred eEEEEEcCCCCccc---------HH----HHHHHHH-hhcceEEEEecchhHH--------HHHHHhCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDF---------SS----EVTAALR-ITDGALVVVDCIEGVC--------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df---------~~----e~~~~l~-~~D~avlvvda~~Gv~--------~~~~~~~~p~~~~inkld 154 (752)
..++||||||..+. .. .+..+++ ..+..++|+||..++. +.....+.+.+.++||+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D 203 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLD 203 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCC
Confidence 58999999997532 11 2445566 4468999999988765 444557888999999999
No 272
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=98.07 E-value=2.9e-05 Score=66.06 Aligned_cols=75 Identities=21% Similarity=0.255 Sum_probs=55.8
Q ss_pred CeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEE
Q 004467 284 PLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 363 (752)
Q Consensus 284 pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai 363 (752)
||++.|..++... |. +..|||.+|++++||+|+++|.+ . ..+|..|.. ...++++|.|||.+++
T Consensus 1 plr~~I~~v~~~~--g~-vv~G~v~~G~i~~G~~v~i~P~~----~-----~~~V~si~~----~~~~~~~a~aGd~v~l 64 (82)
T cd04089 1 PLRLPIIDKYKDM--GT-VVLGKVESGTIKKGDKLLVMPNK----T-----QVEVLSIYN----EDVEVRYARPGENVRL 64 (82)
T ss_pred CeEEEEEeEEEcC--CE-EEEEEEeeeEEecCCEEEEeCCC----c-----EEEEEEEEE----CCEECCEECCCCEEEE
Confidence 6889999888643 65 88999999999999999998743 1 246777653 2467999999999987
Q ss_pred e--ccccccccce
Q 004467 364 V--GLDQFITKNA 374 (752)
Q Consensus 364 ~--Gl~~~~~~tg 374 (752)
. +++...++.|
T Consensus 65 ~l~~i~~~~v~~G 77 (82)
T cd04089 65 RLKGIEEEDISPG 77 (82)
T ss_pred EecCCCHHHCCCC
Confidence 4 4443333445
No 273
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.06 E-value=1e-06 Score=86.67 Aligned_cols=103 Identities=18% Similarity=0.180 Sum_probs=71.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+-.+|.++|.-+||||||+.+|.. +.+.. . .-|+......+.+.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~--~~~~~--~---------------~pT~g~~~~~i~~~---------------- 56 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKN--GEISE--T---------------IPTIGFNIEEIKYK---------------- 56 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHS--SSEEE--E---------------EEESSEEEEEEEET----------------
T ss_pred CcEEEEEEECCCccchHHHHHHhhh--ccccc--c---------------CcccccccceeeeC----------------
Confidence 5677899999999999999999942 21111 0 11333333444453
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhH--H-------HHHH---HhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV--C-------MYAS---KFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv--~-------~~~~---~~~~p~~~~inkld 154 (752)
++.+++.|.+|+..|..--..-...+|+.|+|||+.+-- . .++. ..++|.+++.||.|
T Consensus 57 ~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D 126 (175)
T PF00025_consen 57 GYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQD 126 (175)
T ss_dssp TEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTT
T ss_pred cEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEecccc
Confidence 789999999999777655555667899999999999642 2 1111 13678888889888
No 274
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.06 E-value=5.2e-06 Score=84.72 Aligned_cols=103 Identities=15% Similarity=0.122 Sum_probs=69.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccce-EEEEEeeccchhccccCCCCCCce
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~-~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
..|+++|..++|||+|+.++.... ... ++ --|+.... ..+.. +++..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~--f~~---------~y-------~pTi~~~~~~~~~~--------------~~~~v 49 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA--YPG---------SY-------VPTVFENYTASFEI--------------DKRRI 49 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCC---------cc-------CCccccceEEEEEE--------------CCEEE
Confidence 368999999999999999996321 110 00 01111111 11122 23467
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH------HHHH---H--hCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC------MYAS---K--FGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~------~~~~---~--~~~p~~~~inkld 154 (752)
.++|.||+|...|..-.....+.+|++|+|+|.+..-. .+.. . .++|.+++.||+|
T Consensus 50 ~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~D 116 (222)
T cd04173 50 ELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLD 116 (222)
T ss_pred EEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcc
Confidence 89999999999998777777889999999999997643 1111 1 3578888889988
No 275
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.05 E-value=6.9e-06 Score=82.56 Aligned_cols=89 Identities=17% Similarity=0.241 Sum_probs=58.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccce--EEEEEeeccchhccccCCCCCCce
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG--ISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
.|+++|..++|||||+.+++... . .+. ..-|+.... ..+.+.. ...+++.+
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~--f----------~~~------~~~Tig~~~~~k~~~~~~---------~~~~~~~~ 54 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQ--V----------LGR------PSWTVGCSVDVKHHTYKE---------GTPEEKTF 54 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--C----------CCC------CCcceeeeEEEEEEEEcC---------CCCCCcEE
Confidence 48899999999999999996321 1 100 011322111 1122210 01123468
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~ 136 (752)
.++|-||+|+..|..-...-.+.+|++|+|.|.+..-.
T Consensus 55 ~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~S 92 (202)
T cd04102 55 FVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKS 92 (202)
T ss_pred EEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHH
Confidence 89999999999997766667789999999999887644
No 276
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.04 E-value=6e-06 Score=81.26 Aligned_cols=104 Identities=14% Similarity=0.093 Sum_probs=68.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
..|+++|..++|||+|+.+++. |..... .-.|+.... ..... .++....
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~--~~f~~~----------------~~~Ti~~~~-~~~~~------------~~~~~v~ 50 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTS--NKFPTD----------------YIPTVFDNF-SANVS------------VDGNTVN 50 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhc--CCCCCC----------------CCCcceeee-EEEEE------------ECCEEEE
Confidence 3589999999999999999963 211110 011221111 01111 1234688
Q ss_pred EEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH------HHHHH-----hCCCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC------MYASK-----FGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~------~~~~~-----~~~p~~~~inkld 154 (752)
+++.||+|+..|..-....++.+|++|||.|.+.--. .+... -++|.+++.||+|
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~D 116 (176)
T cd04133 51 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLD 116 (176)
T ss_pred EEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChh
Confidence 9999999999998877778899999999999875322 12221 2577888889988
No 277
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.04 E-value=6.8e-06 Score=81.04 Aligned_cols=102 Identities=13% Similarity=0.100 Sum_probs=66.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccce-EEEEEeeccchhccccCCCCCCceE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
.|+++|..++|||||+.+++... ... ++ --|+.... ..+.. +++...
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~--f~~---------~~-------~~t~~~~~~~~~~~--------------~~~~~~ 50 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDC--YPE---------TY-------VPTVFENYTASFEI--------------DEQRIE 50 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc--CCC---------Cc-------CCceEEEEEEEEEE--------------CCEEEE
Confidence 58999999999999999996321 100 00 01221110 01111 224578
Q ss_pred EEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH------HH---HHH--hCCCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC------MY---ASK--FGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~------~~---~~~--~~~p~~~~inkld 154 (752)
+++.||||+..|..-.....+.+|++|+|.|.+.--. .+ +++ -++|.+++.||.|
T Consensus 51 l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~D 116 (178)
T cd04131 51 LSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTD 116 (178)
T ss_pred EEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChh
Confidence 9999999999887666667789999999999976533 11 111 2577777789988
No 278
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.03 E-value=4.5e-06 Score=82.61 Aligned_cols=83 Identities=16% Similarity=0.193 Sum_probs=56.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccce--EEEEEeeccchhccccCCCCCCce
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG--ISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
.|+++|..++|||||+.+++... ... ++ --|+.... ..+.. ++..+
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~--f~~---------~~-------~~T~g~~~~~~~i~~--------------~~~~~ 49 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGE--FDE---------DY-------IQTLGVNFMEKTISI--------------RGTEI 49 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCC---------CC-------CCccceEEEEEEEEE--------------CCEEE
Confidence 48999999999999999996421 100 00 01221111 11112 12357
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhH
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv 135 (752)
.+++.||+|+..|..-....++.+|++++|+|++.--
T Consensus 50 ~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~ 86 (182)
T cd04128 50 TFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKS 86 (182)
T ss_pred EEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHH
Confidence 8999999999999877777888999999999997653
No 279
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.02 E-value=7.8e-06 Score=93.04 Aligned_cols=103 Identities=22% Similarity=0.318 Sum_probs=76.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
..||++|.+|+|||||.++| +|.-.+ .|+ + =|.|+.-....+.++ ++.
T Consensus 4 ~~valvGNPNvGKTtlFN~L---TG~~q~--VgN-----w------pGvTVEkkeg~~~~~----------------~~~ 51 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNAL---TGANQK--VGN-----W------PGVTVEKKEGKLKYK----------------GHE 51 (653)
T ss_pred ceEEEecCCCccHHHHHHHH---hccCce--ecC-----C------CCeeEEEEEEEEEec----------------Cce
Confidence 34999999999999999999 342222 343 1 167888877777775 788
Q ss_pred EEEEcCCCCcccHH----H-HHH-HH--HhhcceEEEEecchhHH-----HHHHHhCCCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFSS----E-VTA-AL--RITDGALVVVDCIEGVC-----MYASKFGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~~----e-~~~-~l--~~~D~avlvvda~~Gv~-----~~~~~~~~p~~~~inkld 154 (752)
+.++|.||--++.. | +.+ .+ ...|..|-||||+.=.. .++.++|+|.++++|++|
T Consensus 52 i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p~ilaLNm~D 119 (653)
T COG0370 52 IEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNLYLTLQLLELGIPMILALNMID 119 (653)
T ss_pred EEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEEeccHh
Confidence 99999999655432 1 222 22 25799999999996433 777899999999999999
No 280
>PRK09866 hypothetical protein; Provisional
Probab=98.02 E-value=3.4e-06 Score=95.47 Aligned_cols=60 Identities=17% Similarity=0.204 Sum_probs=47.2
Q ss_pred ceEEEEEcCCCC-c----ccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhC--CCHHHHHHHhhCC
Q 004467 97 EYLINLIDSPGH-V----DFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFG--VDESKMMERLWGE 156 (752)
Q Consensus 97 ~~~inliDtPGh-~----df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~--~p~~~~inkldg~ 156 (752)
..++.|+||||. . .+...|..++..+|.+++|||+..+.. ..+++.+ .|+++++||+|..
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~ 302 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQ 302 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCC
Confidence 368999999994 3 256678889999999999999987543 4455566 4999999999953
No 281
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.01 E-value=1.3e-05 Score=79.26 Aligned_cols=104 Identities=12% Similarity=0.077 Sum_probs=68.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccce-EEEEEeeccchhccccCCCCCCc
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~-~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
...|+++|..++|||||+.+++... ... +..-|+.... ..+.. +++.
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~--f~~----------------~~~pT~~~~~~~~~~~--------------~~~~ 52 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDC--FPE----------------NYVPTVFENYTASFEI--------------DTQR 52 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC--CCC----------------ccCCceeeeeEEEEEE--------------CCEE
Confidence 4469999999999999999996421 111 0011221111 01111 2235
Q ss_pred eEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH------HHH---HH--hCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC------MYA---SK--FGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~------~~~---~~--~~~p~~~~inkld 154 (752)
..+.|.||+|...|..-.....+.+|++|+|.|.+..-. .+. .+ -++|.+++.||.|
T Consensus 53 ~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~D 120 (182)
T cd04172 53 IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD 120 (182)
T ss_pred EEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChh
Confidence 789999999999887766667789999999999887643 111 11 1577788889988
No 282
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.96 E-value=3.4e-05 Score=81.43 Aligned_cols=82 Identities=17% Similarity=0.219 Sum_probs=49.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+..+|+++|..|+|||||+++|+...-.... ++. +-|......+..+ +
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs---------~f~------s~t~~~~~~~~~~----------------~ 84 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVS---------AFQ------SEGLRPMMVSRTR----------------A 84 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCccccc---------CCC------CcceeEEEEEEEE----------------C
Confidence 35678999999999999999999743221111 110 0111111222223 3
Q ss_pred ceEEEEEcCCCCcccHH---HHHHHHH------hhcceEEEE
Q 004467 97 EYLINLIDSPGHVDFSS---EVTAALR------ITDGALVVV 129 (752)
Q Consensus 97 ~~~inliDtPGh~df~~---e~~~~l~------~~D~avlvv 129 (752)
++.+++|||||..|... +....++ ..|++++|.
T Consensus 85 G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~ 126 (313)
T TIGR00991 85 GFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVD 126 (313)
T ss_pred CeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 78999999999876522 2233333 378888883
No 283
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.96 E-value=1.3e-05 Score=77.30 Aligned_cols=85 Identities=20% Similarity=0.290 Sum_probs=57.6
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEEE
Q 004467 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLIN 101 (752)
Q Consensus 22 i~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~in 101 (752)
|+++|..++|||||+.++.... .... . ..|+........+.. ++..+.+.
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~--~~~~-~---------------~~t~~~~~~~~~~~~------------~~~~~~l~ 51 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGE--FPEN-Y---------------IPTIGIDSYSKEVSI------------DGKPVNLE 51 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS--TTSS-S---------------ETTSSEEEEEEEEEE------------TTEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHhhc--cccc-c---------------ccccccccccccccc------------cccccccc
Confidence 7899999999999999986321 1110 0 012111111112221 23468899
Q ss_pred EEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH
Q 004467 102 LIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136 (752)
Q Consensus 102 liDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~ 136 (752)
|.|++|+..|........+.+|+.|+|.|....-.
T Consensus 52 i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S 86 (162)
T PF00071_consen 52 IWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEES 86 (162)
T ss_dssp EEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHH
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 99999999998777777889999999999887544
No 284
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=97.95 E-value=1.3e-05 Score=79.56 Aligned_cols=103 Identities=13% Similarity=0.110 Sum_probs=64.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceE-EEEEeeccchhccccCCCCCCce
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGI-SLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~-~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
..|+++|..++|||||+.+|.. |..... . ..|+..... .+.+. +...
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~--~~~~~~-~---------------~~t~~~~~~~~~~~~--------------~~~~ 49 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTL--GEFPEE-Y---------------HPTVFENYVTDCRVD--------------GKPV 49 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCcc-c---------------CCcccceEEEEEEEC--------------CEEE
Confidence 3689999999999999999952 111110 0 011111111 11121 2245
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH------HHH---HH--hCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC------MYA---SK--FGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~------~~~---~~--~~~p~~~~inkld 154 (752)
.+++.||||+..|..-....++.+|+++++.|....-. .+. .. -.+|.+++.||+|
T Consensus 50 ~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~D 116 (187)
T cd04129 50 QLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKD 116 (187)
T ss_pred EEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChh
Confidence 78899999988776443345688999999998865322 111 11 2578888889999
No 285
>PLN00023 GTP-binding protein; Provisional
Probab=97.92 E-value=1.1e-05 Score=85.51 Aligned_cols=99 Identities=19% Similarity=0.282 Sum_probs=59.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
...|+++|+.++|||||+.+++... .... . +..-|.+... ..+.+......++++.. ..++.+
T Consensus 21 ~iKIVLLGdsGVGKTSLI~rf~~g~--F~~~--~----------~pTIG~d~~i--k~I~~~~~~~~~~~ik~-d~~k~v 83 (334)
T PLN00023 21 QVRVLVVGDSGVGKSSLVHLIVKGS--SIAR--P----------PQTIGCTVGV--KHITYGSPGSSSNSIKG-DSERDF 83 (334)
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCC--cccc--c----------CCceeeeEEE--EEEEECCcccccccccc-cCCceE
Confidence 4569999999999999999995321 1000 0 0000122211 12223210000000000 012457
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~G 134 (752)
.++|.||+|+..|..-...-.+.+|++|+|+|.+.-
T Consensus 84 ~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr 119 (334)
T PLN00023 84 FVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQR 119 (334)
T ss_pred EEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCH
Confidence 899999999999987666778899999999998864
No 286
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.91 E-value=1.8e-05 Score=81.22 Aligned_cols=103 Identities=12% Similarity=0.085 Sum_probs=67.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
.|+++|..++|||+|+.+++... .... + .-|+.... ..... .++....+
T Consensus 15 KIvvvGd~~VGKTsLi~r~~~~~--F~~~------y----------~pTi~~~~-~~~i~------------~~~~~v~l 63 (232)
T cd04174 15 KLVLVGDVQCGKTAMLQVLAKDC--YPET------Y----------VPTVFENY-TAGLE------------TEEQRVEL 63 (232)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC--CCCC------c----------CCceeeee-EEEEE------------ECCEEEEE
Confidence 68899999999999999985321 1110 0 01221111 00111 12346789
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH------HH---HHH--hCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC------MY---ASK--FGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~------~~---~~~--~~~p~~~~inkld 154 (752)
+|.||+|...|..-.....+.+|++|+|.|.+.--. .| +.. -++|++++.||+|
T Consensus 64 ~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~D 128 (232)
T cd04174 64 SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTD 128 (232)
T ss_pred EEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 999999999997766667899999999999986433 11 121 2577778889988
No 287
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.90 E-value=3.8e-06 Score=81.68 Aligned_cols=40 Identities=25% Similarity=0.283 Sum_probs=30.7
Q ss_pred ceEEEEEcCCCCcccHH----HHHHHHHhhcceEEEEecchhHH
Q 004467 97 EYLINLIDSPGHVDFSS----EVTAALRITDGALVVVDCIEGVC 136 (752)
Q Consensus 97 ~~~inliDtPGh~df~~----e~~~~l~~~D~avlvvda~~Gv~ 136 (752)
...+.||||||..+... -+...+..+|.+|+|+++.....
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~ 143 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLT 143 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGG
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccc
Confidence 34689999999755332 26667789999999999998654
No 288
>PTZ00258 GTP-binding protein; Provisional
Probab=97.87 E-value=4e-05 Score=83.95 Aligned_cols=106 Identities=20% Similarity=0.187 Sum_probs=62.1
Q ss_pred hcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeecc-chhccccC
Q 004467 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD-DALKSYKG 91 (752)
Q Consensus 13 ~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~-~~~~~~~~ 91 (752)
++...+-..|+|+|.+++|||||.++|... ......-. +.|+......+.+.+.. ..+.....
T Consensus 15 ~~~~~~~~kvgIVG~PNvGKSTLfnaLt~~-~~~v~n~p---------------ftTi~p~~g~v~~~d~r~~~l~~~~~ 78 (390)
T PTZ00258 15 LGRPGNNLKMGIVGLPNVGKSTTFNALCKQ-QVPAENFP---------------FCTIDPNTARVNVPDERFDWLCKHFK 78 (390)
T ss_pred hccCCCCcEEEEECCCCCChHHHHHHHhcC-cccccCCC---------------CCcccceEEEEecccchhhHHHHHcC
Confidence 333444557999999999999999999322 22111001 23444444444443100 00000000
Q ss_pred CCCCCceEEEEEcCCCCcc-------cHHHHHHHHHhhcceEEEEecchh
Q 004467 92 ERNGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG 134 (752)
Q Consensus 92 ~~~~~~~~inliDtPGh~d-------f~~e~~~~l~~~D~avlvvda~~G 134 (752)
..+.-..++.|+||||-.. +.......++.+|+.++|||+.+.
T Consensus 79 ~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f~d 128 (390)
T PTZ00258 79 PKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAFED 128 (390)
T ss_pred CcccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCCCC
Confidence 1111234689999999542 445677888999999999998644
No 289
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=97.85 E-value=0.00012 Score=63.16 Aligned_cols=80 Identities=14% Similarity=0.211 Sum_probs=56.9
Q ss_pred eEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEe
Q 004467 285 LMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 364 (752)
Q Consensus 285 l~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~ 364 (752)
|.+.|..+|...+.|. ++.|||.+|++++||+++++|.+. + .....+|..|.. ...++++|.|||.+++.
T Consensus 1 ~~~~I~~vf~v~g~Gt-Vv~G~v~~G~v~~g~~v~~~P~~~--g---~~~~~~V~sI~~----~~~~~~~a~aGd~v~l~ 70 (87)
T cd03694 1 AEFQIDEIYSVPGVGT-VVGGTVSKGVIRLGDTLLLGPDQD--G---SFRPVTVKSIHR----NRSPVRVVRAGQSASLA 70 (87)
T ss_pred CEEEEEeEEEcCCcce-EEEEEEecCEEeCCCEEEECCCCC--C---CEeEEEEEEEEE----CCeECCEECCCCEEEEE
Confidence 3567777777677786 899999999999999999986420 1 112357777653 35679999999999874
Q ss_pred --ccccccccce
Q 004467 365 --GLDQFITKNA 374 (752)
Q Consensus 365 --Gl~~~~~~tg 374 (752)
+++...++.|
T Consensus 71 l~~i~~~~i~~G 82 (87)
T cd03694 71 LKKIDRSLLRKG 82 (87)
T ss_pred EcCCCHHHcCCc
Confidence 5444334445
No 290
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.85 E-value=3.3e-05 Score=80.99 Aligned_cols=97 Identities=22% Similarity=0.211 Sum_probs=55.9
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccc-hhccccCCCCCCceEE
Q 004467 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDD-ALKSYKGERNGNEYLI 100 (752)
Q Consensus 22 i~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~-~~~~~~~~~~~~~~~i 100 (752)
|||+|.+++|||||.++|....-. .+ ++ -+.|+......+.+.+..- .+....+..+.-...+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~-----~~-----n~------pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i 64 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAE-----AA-----NY------PFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATI 64 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCc-----cc-----cc------cccchhceeeeEEeccchhhhHHHHhCCceeeeeEE
Confidence 689999999999999999432211 11 00 1234444333333331000 0000000001112369
Q ss_pred EEEcCCCCcc-------cHHHHHHHHHhhcceEEEEecchh
Q 004467 101 NLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG 134 (752)
Q Consensus 101 nliDtPGh~d-------f~~e~~~~l~~~D~avlvvda~~G 134 (752)
.|+|+||... +.......++.+|+.+.|||+.+.
T Consensus 65 ~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~d 105 (274)
T cd01900 65 EFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFED 105 (274)
T ss_pred EEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcCC
Confidence 9999999442 445677788999999999998754
No 291
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.82 E-value=1.4e-05 Score=76.45 Aligned_cols=35 Identities=20% Similarity=0.470 Sum_probs=27.0
Q ss_pred HHHHHhhcccCCeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 7 EGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 7 ~~~~~~~~~~~~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
+.+..+.+..+. +.++++|+.|+|||||+++|+..
T Consensus 24 ~g~~~l~~~l~~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC-CEEEEECCCCCCHHHHHHHHHhh
Confidence 344444444445 89999999999999999999754
No 292
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.79 E-value=6e-05 Score=76.55 Aligned_cols=83 Identities=19% Similarity=0.273 Sum_probs=50.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
++|.++|..|+||||+++.||...-.-.. .+ ....|.........+. ++.
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~--~~------------~~~~t~~~~~~~~~~~----------------g~~ 50 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSG--SS------------AKSVTQECQKYSGEVD----------------GRQ 50 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS----TT------------TSS--SS-EEEEEEET----------------TEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeec--cc------------cCCcccccceeeeeec----------------ceE
Confidence 58999999999999999999744332111 00 1123433333344443 789
Q ss_pred EEEEcCCCCcc-------cHHHHHHHHH----hhcceEEEEecc
Q 004467 100 INLIDSPGHVD-------FSSEVTAALR----ITDGALVVVDCI 132 (752)
Q Consensus 100 inliDtPGh~d-------f~~e~~~~l~----~~D~avlvvda~ 132 (752)
+++|||||.-| ...++..++. ..++.|+|+...
T Consensus 51 v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~ 94 (212)
T PF04548_consen 51 VTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG 94 (212)
T ss_dssp EEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT
T ss_pred EEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC
Confidence 99999999644 2334555444 368899999887
No 293
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.78 E-value=1.8e-05 Score=86.11 Aligned_cols=109 Identities=19% Similarity=0.159 Sum_probs=62.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCcc-ccCCCccccCCc---hhHhHh------cceeccceEEEEEeeccchhc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ-EVAGDVRMTDTR---ADEAER------GITIKSTGISLYYEMTDDALK 87 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~-~~~g~~~~~D~~---~~E~eR------giTi~s~~~~~~~~~~~~~~~ 87 (752)
+-.+++++|+.|+||||++-.|....-.... ...+ ...+|.. ..|+-+ |+.+..... ......
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~-lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~------~~~l~~ 208 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVA-LLTTDSYRIGGHEQLRIFGKILGVPVHAVKD------GGDLQL 208 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEE-EEecccccccHHHHHHHHHHHcCCceEecCC------cccHHH
Confidence 3579999999999999999999754311000 0011 1123332 345544 433321110 000000
Q ss_pred cccCCCCCCceEEEEEcCCCCc---ccHHHHHHHHHhhcce---EEEEecchhHH
Q 004467 88 SYKGERNGNEYLINLIDSPGHV---DFSSEVTAALRITDGA---LVVVDCIEGVC 136 (752)
Q Consensus 88 ~~~~~~~~~~~~inliDtPGh~---df~~e~~~~l~~~D~a---vlvvda~~Gv~ 136 (752)
.+ .+..++.+.||||||.. ++..+....+..++.. +||++|+.|..
T Consensus 209 ~l---~~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~ 260 (374)
T PRK14722 209 AL---AELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGD 260 (374)
T ss_pred HH---HHhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChH
Confidence 00 11235688999999976 5566666667655555 99999998875
No 294
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=97.78 E-value=9.6e-05 Score=63.67 Aligned_cols=82 Identities=17% Similarity=0.352 Sum_probs=57.8
Q ss_pred eEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEe
Q 004467 285 LMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 364 (752)
Q Consensus 285 l~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~ 364 (752)
|++.|..+|...+.|. +..|||.+|+++.||.|.++|++. .. ..+|..|.. ...++++|.|||.+++.
T Consensus 1 ~r~~V~~v~~~~g~G~-vv~G~v~~G~v~~gd~v~~~p~~~--~~-----~~~V~si~~----~~~~~~~a~~G~~v~l~ 68 (87)
T cd03697 1 FLMPIEDVFSIPGRGT-VVTGRIERGTIKVGDEVEIVGFGE--TL-----KTTVTGIEM----FRKTLDEAEAGDNVGVL 68 (87)
T ss_pred CEeeEEEEEeCCCcEE-EEEEEECCCCCccCCEEEEeCCCC--Cc-----eEEEEEEEE----CCcCCCEECCCCEEEEE
Confidence 4567777777667775 889999999999999999886421 11 246777653 35679999999999874
Q ss_pred --ccccccccce-eecc
Q 004467 365 --GLDQFITKNA-TLTN 378 (752)
Q Consensus 365 --Gl~~~~~~tg-TL~~ 378 (752)
+++...+..| .|++
T Consensus 69 l~~~~~~~v~rG~vl~~ 85 (87)
T cd03697 69 LRGVKREDVERGMVLAK 85 (87)
T ss_pred ECCCCHHHcCCccEEec
Confidence 5543334556 4444
No 295
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.78 E-value=2.8e-05 Score=83.90 Aligned_cols=132 Identities=17% Similarity=0.229 Sum_probs=74.9
Q ss_pred HHhhcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHh--------cceeccceEEEEEee
Q 004467 10 RRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAER--------GITIKSTGISLYYEM 81 (752)
Q Consensus 10 ~~~~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eR--------giTi~s~~~~~~~~~ 81 (752)
+.+...+.--..||++|++++|||||++++....-+- ...|..+.||.| |-||.++---|.
T Consensus 8 kDIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP--------~i~~~~~k~Ra~DELpqs~~GktItTTePkfv--- 76 (492)
T TIGR02836 8 KDIAERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLP--------NISNEYDKERAQDELPQSAAGKTIMTTEPKFV--- 76 (492)
T ss_pred HHHHHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccc--------cccchhHHhHHHhccCcCCCCCCcccCCCccc---
Confidence 3344444455689999999999999999996542110 111222222222 322222111110
Q ss_pred ccchhccccCCCCCCceEEEEEcCCCCcc-------------------------cHHH----HHHHHH-hhcceEEEE-e
Q 004467 82 TDDALKSYKGERNGNEYLINLIDSPGHVD-------------------------FSSE----VTAALR-ITDGALVVV-D 130 (752)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~inliDtPGh~d-------------------------f~~e----~~~~l~-~~D~avlvv-d 130 (752)
+...+. +. ..++-...+.||||+|+.| |... +...+. -+|.+|+|. |
T Consensus 77 P~kAvE-I~-~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTD 154 (492)
T TIGR02836 77 PNEAVE-IN-INEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTD 154 (492)
T ss_pred cCcceE-Ee-ccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcC
Confidence 000000 00 0122346889999999654 2222 344555 789999999 8
Q ss_pred cc------hhH-H------HHHHHhCCCHHHHHHHhh
Q 004467 131 CI------EGV-C------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 131 a~------~Gv-~------~~~~~~~~p~~~~inkld 154 (752)
++ ++. . ..+++.++|.++++||.|
T Consensus 155 gsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~d 191 (492)
T TIGR02836 155 GTITDIPREDYVEAEERVIEELKELNKPFIILLNSTH 191 (492)
T ss_pred CCccccccccchHHHHHHHHHHHhcCCCEEEEEECcC
Confidence 85 221 1 666788999999999887
No 296
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.76 E-value=5.3e-06 Score=74.04 Aligned_cols=92 Identities=16% Similarity=0.221 Sum_probs=66.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
..++++|.+++|||||+.+|-.+.-..++ .. -++|+ +.
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykK-----------------------TQ--Ave~~----------------d~- 39 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKK-----------------------TQ--AVEFN----------------DK- 39 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcc-----------------------cc--eeecc----------------Cc-
Confidence 35889999999999999999322111111 01 13443 11
Q ss_pred EEEEcCCC----CcccHHHHHHHHHhhcceEEEEecchhHH----HHHHHhCCCHHHHHHHhh
Q 004467 100 INLIDSPG----HVDFSSEVTAALRITDGALVVVDCIEGVC----MYASKFGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPG----h~df~~e~~~~l~~~D~avlvvda~~Gv~----~~~~~~~~p~~~~inkld 154 (752)
-.||||| |..+....+..+..+|..++|-.|.++.. .++.-+..|+|.+++|.|
T Consensus 40 -~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~~k~vIgvVTK~D 101 (148)
T COG4917 40 -GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPPGFLDIGVKKVIGVVTKAD 101 (148)
T ss_pred -cccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCcccccccccceEEEEeccc
Confidence 2599999 77777778888899999999999999866 555556677888888887
No 297
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=97.75 E-value=0.00016 Score=61.64 Aligned_cols=66 Identities=27% Similarity=0.437 Sum_probs=51.5
Q ss_pred eEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEe
Q 004467 285 LMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 364 (752)
Q Consensus 285 l~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~ 364 (752)
|++.|.++|...+.|. +..|||.+|++++||++.++|.+ . ..+|..|.. ...++++|.|||.+++.
T Consensus 1 lr~~i~~~~~~~~~g~-vv~G~v~sG~i~~g~~v~~~p~~----~-----~~~V~sI~~----~~~~~~~a~aGd~v~i~ 66 (83)
T cd03696 1 FRLPIDRVFTVKGQGT-VVTGTVLSGSVKVGDKVEILPLG----E-----ETRVRSIQV----HGKDVEEAKAGDRVALN 66 (83)
T ss_pred CEEEEEEEEEcCCcEE-EEEEEEeecEEeCCCEEEECCCC----c-----eEEEEEEEE----CCcCcCEEcCCCEEEEE
Confidence 4577888877667775 88999999999999999998643 1 246777763 34678999999999874
No 298
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=97.75 E-value=8e-05 Score=80.73 Aligned_cols=99 Identities=23% Similarity=0.241 Sum_probs=58.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeecc-chhccccCCCCCCce
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD-DALKSYKGERNGNEY 98 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~-~~~~~~~~~~~~~~~ 98 (752)
..|+|+|.+++|||||.++|....-. .+ ++ -+.|+......+.+.+.. ..+....+..+.-..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~-----v~-----ny------pftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a 66 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAE-----AA-----NY------PFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPA 66 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCe-----ec-----cc------ccccccceEEEEEeccccchhhHHhcCCccccCc
Confidence 36999999999999999999432211 11 10 133444443333333100 000000001111224
Q ss_pred EEEEEcCCCCcc-------cHHHHHHHHHhhcceEEEEecchh
Q 004467 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG 134 (752)
Q Consensus 99 ~inliDtPGh~d-------f~~e~~~~l~~~D~avlvvda~~G 134 (752)
.+.|+|+||-.+ +.......++.||+.+.|||+.+.
T Consensus 67 ~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~d 109 (364)
T PRK09601 67 TIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFED 109 (364)
T ss_pred eEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCcc
Confidence 799999999543 444677788999999999999754
No 299
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=97.72 E-value=5.4e-05 Score=76.92 Aligned_cols=105 Identities=19% Similarity=0.136 Sum_probs=69.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
..|+++|..++|||||+.+|....- .+ ....|+........... ......
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~--~~----------------~~~~t~~~~~~~~~~~~------------~~~~~~ 55 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF--PE----------------GYPPTIGNLDPAKTIEP------------YRRNIK 55 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC--cc----------------cCCCceeeeeEEEEEEe------------CCCEEE
Confidence 6799999999999999999953221 10 01123332222222220 111456
Q ss_pred EEEEcCCCCcccHHHHHHHHHhhcceEEEEecch--hHH-------HHHHHh---CCCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE--GVC-------MYASKF---GVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~D~avlvvda~~--Gv~-------~~~~~~---~~p~~~~inkld 154 (752)
+.++||+|+.+|..-+....+.++++++++|... ... ..+... +.|.+++.||+|
T Consensus 56 ~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~D 122 (219)
T COG1100 56 LQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKID 122 (219)
T ss_pred EEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccc
Confidence 8999999999998777777889999999999985 222 222222 477788889888
No 300
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=97.70 E-value=0.00027 Score=59.92 Aligned_cols=66 Identities=17% Similarity=0.241 Sum_probs=50.0
Q ss_pred eEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEe
Q 004467 285 LMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 364 (752)
Q Consensus 285 l~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~ 364 (752)
|++.|..+|.....+. .+.|||.+|+++.||+|+++|.+ . ..+|..|.. +..++++|.|||.+++.
T Consensus 1 lr~~V~dv~k~~~~~~-~v~Gkv~~G~v~~Gd~v~~~P~~----~-----~~~V~si~~----~~~~~~~a~aGd~v~l~ 66 (81)
T cd03695 1 FRFPVQYVIRPNADFR-GYAGTIASGSIRVGDEVVVLPSG----K-----TSRVKSIET----FDGELDEAGAGESVTLT 66 (81)
T ss_pred CEeeEEEEEeeCCCcE-EEEEEEccceEECCCEEEEcCCC----C-----eEEEEEEEE----CCcEeCEEcCCCEEEEE
Confidence 4567777776554454 68999999999999999998753 1 146777653 34679999999999884
No 301
>COG2262 HflX GTPases [General function prediction only]
Probab=97.68 E-value=8.8e-05 Score=79.84 Aligned_cols=107 Identities=18% Similarity=0.183 Sum_probs=72.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
..+..|+++|=.+||||||.++|....-..... + =-|.+.+.-.+.+. +
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~-------L---------FATLdpttR~~~l~---------------~ 238 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQ-------L---------FATLDPTTRRIELG---------------D 238 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeecccc-------c---------cccccCceeEEEeC---------------C
Confidence 457889999999999999999995221111110 0 01444444445554 2
Q ss_pred ceEEEEEcCCCCcc-----c---HHHHHHHHHhhcceEEEEecchhHH--------HHHHHh---CCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVD-----F---SSEVTAALRITDGALVVVDCIEGVC--------MYASKF---GVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~d-----f---~~e~~~~l~~~D~avlvvda~~Gv~--------~~~~~~---~~p~~~~inkld 154 (752)
++.+.|-||-|+.+ + ...+......+|..+.||||++.-. ..+.+. .+|.+.+.||+|
T Consensus 239 g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD 315 (411)
T COG2262 239 GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKID 315 (411)
T ss_pred CceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEeccc
Confidence 67899999999754 1 1234445568999999999998633 344443 478888999988
No 302
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=5.7e-05 Score=82.74 Aligned_cols=98 Identities=24% Similarity=0.267 Sum_probs=71.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
.-.++++|++|+|||||+..|...-- .++-.|..--||+.++ +.+
T Consensus 69 PfIvavvGPpGtGKsTLirSlVrr~t-------------k~ti~~i~GPiTvvsg----------------------K~R 113 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRSLVRRFT-------------KQTIDEIRGPITVVSG----------------------KTR 113 (1077)
T ss_pred CeEEEeecCCCCChhHHHHHHHHHHH-------------HhhhhccCCceEEeec----------------------cee
Confidence 34678999999999999999964321 1111111112454332 478
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHH-HHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDES-KMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~-~~inkld 154 (752)
+|+|+.|| .|+ ..|+.-+.++|.++|+||+.-|.+ .++..+|+|++ .|++.+|
T Consensus 114 RiTflEcp--~Dl-~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlD 174 (1077)
T COG5192 114 RITFLECP--SDL-HQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLD 174 (1077)
T ss_pred EEEEEeCh--HHH-HHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecc
Confidence 99999999 354 588999999999999999999987 66778899974 4557777
No 303
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.61 E-value=6.2e-05 Score=80.98 Aligned_cols=58 Identities=17% Similarity=0.165 Sum_probs=38.8
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHHHHHHH---hCCCHHHHHHHhhCC
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCMYASK---FGVDESKMMERLWGE 156 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~~~~~~---~~~p~~~~inkldg~ 156 (752)
.++.+.||||+|... .++. ....+|.+++|++...|-..++.+ +.+.-++++||.|..
T Consensus 147 ~g~d~viieT~Gv~q--s~~~-i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~aDIiVVNKaDl~ 207 (332)
T PRK09435 147 AGYDVILVETVGVGQ--SETA-VAGMVDFFLLLQLPGAGDELQGIKKGIMELADLIVINKADGD 207 (332)
T ss_pred cCCCEEEEECCCCcc--chhH-HHHhCCEEEEEecCCchHHHHHHHhhhhhhhheEEeehhccc
Confidence 468999999999763 2322 577899999998754443322222 223447889999943
No 304
>PRK13768 GTPase; Provisional
Probab=97.60 E-value=7.1e-05 Score=78.09 Aligned_cols=57 Identities=12% Similarity=0.275 Sum_probs=40.7
Q ss_pred eEEEEEcCCCCcccHH------HHHHHHHh--hcceEEEEecchhHH-------HHH-----HHhCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDFSS------EVTAALRI--TDGALVVVDCIEGVC-------MYA-----SKFGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df~~------e~~~~l~~--~D~avlvvda~~Gv~-------~~~-----~~~~~p~~~~inkld 154 (752)
..+.++||||..++.. ...+.+.. +|++++|+|+..+.. .+. ..+++|.++++||+|
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D 173 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKAD 173 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHh
Confidence 3688999999766432 23333433 899999999987643 111 157899999999999
No 305
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=2.6e-05 Score=76.33 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=69.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
+..+.|-++|..|||||+|.=.|++... .+. + .+|.-....+.+.
T Consensus 36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~------~~T--v-----------tSiepn~a~~r~g---------------- 80 (238)
T KOG0090|consen 36 SKQNAVLLVGLSDSGKTSLFTQLITGSH------RGT--V-----------TSIEPNEATYRLG---------------- 80 (238)
T ss_pred ccCCcEEEEecCCCCceeeeeehhcCCc------cCe--e-----------eeeccceeeEeec----------------
Confidence 4457888999999999999988864421 121 1 1343344333332
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHH---hhcceEEEEecchhHH-----------HHH----HHhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALR---ITDGALVVVDCIEGVC-----------MYA----SKFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~---~~D~avlvvda~~Gv~-----------~~~----~~~~~p~~~~inkld 154 (752)
+....|||-|||...-.....-+. .+-+.|+|||+..=.. -+. .+.++|+.+.+||-|
T Consensus 81 s~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqD 156 (238)
T KOG0090|consen 81 SENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQD 156 (238)
T ss_pred CcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchh
Confidence 445899999999998877777776 7889999999986432 111 234566666677765
No 306
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.59 E-value=6.8e-05 Score=77.65 Aligned_cols=107 Identities=20% Similarity=0.279 Sum_probs=69.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
+.|-+|+++|-++||||||+++|....- + .+.-.+| |+....-+..|. +
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKp---k--Va~YaFT-----------TL~P~iG~v~yd---------------d 242 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKP---K--VAHYAFT-----------TLRPHIGTVNYD---------------D 242 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCC---c--cccccee-----------eeccccceeecc---------------c
Confidence 4577999999999999999999943221 1 3321122 455555445554 1
Q ss_pred ceEEEEEcCCCCcc-------cHHHHHHHHHhhcceEEEEecchhH-----H----------HHHHH-hCCCHHHHHHHh
Q 004467 97 EYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGV-----C----------MYASK-FGVDESKMMERL 153 (752)
Q Consensus 97 ~~~inliDtPGh~d-------f~~e~~~~l~~~D~avlvvda~~Gv-----~----------~~~~~-~~~p~~~~inkl 153 (752)
..+|++-|-||... .-.+..+=+..|+..++|||...+- + .|-+. ...|.++|+||+
T Consensus 243 f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKi 322 (366)
T KOG1489|consen 243 FSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKI 322 (366)
T ss_pred cceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEecc
Confidence 33499999999432 2334455556689999999999881 1 22222 245678888998
Q ss_pred h
Q 004467 154 W 154 (752)
Q Consensus 154 d 154 (752)
|
T Consensus 323 D 323 (366)
T KOG1489|consen 323 D 323 (366)
T ss_pred C
Confidence 8
No 307
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=97.56 E-value=0.00012 Score=70.53 Aligned_cols=97 Identities=13% Similarity=0.094 Sum_probs=59.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
.|+++|..++|||||+.+++.. .... +..+ +...-...+.+. ++.+.+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~--~f~~---------~~~~-------~~~~~~~~i~~~--------------~~~~~l 49 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTG--SYVQ---------LESP-------EGGRFKKEVLVD--------------GQSHLL 49 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhC--CCCC---------CCCC-------CccceEEEEEEC--------------CEEEEE
Confidence 5899999999999999998632 1111 0000 000001112222 235678
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH--------HHHHH----hCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--------MYASK----FGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~--------~~~~~----~~~p~~~~inkld 154 (752)
.+-||+|..+. ...+.+|++++|.|.+.--. ..+.. .++|.+++.||.|
T Consensus 50 ~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~D 110 (158)
T cd04103 50 LIRDEGGAPDA-----QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDA 110 (158)
T ss_pred EEEECCCCCch-----hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHH
Confidence 99999999763 34567999999999876433 11111 3467777888877
No 308
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=97.55 E-value=0.00087 Score=59.26 Aligned_cols=89 Identities=19% Similarity=0.240 Sum_probs=60.3
Q ss_pred CCCCeEEEEEEEeecC--------CCCceeEEEEEEeeeecCCCEEEEccCCCCC--CCcc-cceeeeeeeEEEEecCce
Q 004467 281 PNGPLMLYVSKMIPAS--------DKGRFFAFGRVFSGKVSTGLKVRIMGPNYVP--GEKK-DLYVKSVQRTVIWMGKKQ 349 (752)
Q Consensus 281 ~~~pl~~~V~Kv~~~~--------~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~--~~~~-~~~~~kv~~l~~~~g~~~ 349 (752)
.+.|+.|+|.++|..+ .+|. ++-++|.+|.|+.||+|.+.+.-... ++.. .....+|..|+ ...
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~Gg-VigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~----~~~ 76 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGG-VAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLK----AEN 76 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceee-EEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEE----ecC
Confidence 4578889998888755 4566 89999999999999999887431110 0100 11223455544 244
Q ss_pred eeeccccCCCEEEE-eccccccccce
Q 004467 350 ETVEDVPCGNTVAM-VGLDQFITKNA 374 (752)
Q Consensus 350 ~~V~ea~AGdIvai-~Gl~~~~~~tg 374 (752)
..+++|.||+.++| ++|+..+++.+
T Consensus 77 ~~l~~a~pGgliGvgT~Ldpsltk~D 102 (113)
T cd03688 77 NDLQEAVPGGLIGVGTKLDPTLTKAD 102 (113)
T ss_pred ccccEEeCCCeEEEccccCccccccc
Confidence 66999999999998 57776655544
No 309
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.53 E-value=0.00011 Score=76.56 Aligned_cols=86 Identities=26% Similarity=0.349 Sum_probs=60.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
.-.++++|.+.+|||||++.| ++.-++ .+.--|+ |...-.--+.| ++-
T Consensus 63 da~v~lVGfPsvGKStLL~~L---Tnt~se--va~y~FT-----------Tl~~VPG~l~Y----------------~ga 110 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKL---TNTKSE--VADYPFT-----------TLEPVPGMLEY----------------KGA 110 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHH---hCCCcc--ccccCce-----------ecccccceEee----------------cCc
Confidence 457999999999999999999 333322 2211011 22222222444 478
Q ss_pred EEEEEcCCCCcc-------cHHHHHHHHHhhcceEEEEecchhHH
Q 004467 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVC 136 (752)
Q Consensus 99 ~inliDtPGh~d-------f~~e~~~~l~~~D~avlvvda~~Gv~ 136 (752)
+|.|+|+||... -..++++.+|.||..++|+|+.+...
T Consensus 111 ~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~ 155 (365)
T COG1163 111 QIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPH 155 (365)
T ss_pred eEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChh
Confidence 999999999543 23679999999999999999998754
No 310
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=97.52 E-value=3.9e-05 Score=78.34 Aligned_cols=103 Identities=13% Similarity=0.125 Sum_probs=63.5
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEEE
Q 004467 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLIN 101 (752)
Q Consensus 22 i~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~in 101 (752)
|.++|..++||||....+......- ++. .=|.|++.....+.+. ....++
T Consensus 2 iLLmG~~~SGKTSi~~vIF~~~~p~------dT~---------~L~~T~~ve~~~v~~~---------------~~~~l~ 51 (232)
T PF04670_consen 2 ILLMGPRRSGKTSIRSVIFHKYSPR------DTL---------RLEPTIDVEKSHVRFL---------------SFLPLN 51 (232)
T ss_dssp EEEEESTTSSHHHHHHHHHS---GG------GGG---------G-----SEEEEEEECT---------------TSCEEE
T ss_pred EEEEcCCCCChhhHHHHHHcCCCch------hcc---------ccCCcCCceEEEEecC---------------CCcEEE
Confidence 6799999999999998875332211 111 1145666555555443 356999
Q ss_pred EEcCCCCcccHHH-----HHHHHHhhcceEEEEecc-hhHH----------HHHHH--hCCCHHHHHHHhh
Q 004467 102 LIDSPGHVDFSSE-----VTAALRITDGALVVVDCI-EGVC----------MYASK--FGVDESKMMERLW 154 (752)
Q Consensus 102 liDtPGh~df~~e-----~~~~l~~~D~avlvvda~-~Gv~----------~~~~~--~~~p~~~~inkld 154 (752)
+.|+||+.+|... ...-++.+++.|.|+|+. +... ..+.+ -++.+.+|+.|||
T Consensus 52 iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D 122 (232)
T PF04670_consen 52 IWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMD 122 (232)
T ss_dssp EEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CC
T ss_pred EEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecc
Confidence 9999999988765 466688999999999999 3322 22222 2455566777777
No 311
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.51 E-value=0.00013 Score=78.52 Aligned_cols=130 Identities=18% Similarity=0.197 Sum_probs=69.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCcccc--CCc---------hhHhHhcceeccceEEEEEeeccc--
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMT--DTR---------ADEAERGITIKSTGISLYYEMTDD-- 84 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~--D~~---------~~E~eRgiTi~s~~~~~~~~~~~~-- 84 (752)
....|+++|..|+||||++..|..... . ..+++.+. |.. .....+|+.+... .......
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~---~-~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~----~~~~dpa~~ 184 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK---A-QGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQ----KEGADPASV 184 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---h-cCCeEEEEecCccchhhHHHHHHHHHHcCceEEEe----CCCCCHHHH
Confidence 357899999999999999999965432 1 02233322 321 1122344432111 1100000
Q ss_pred hhccccCCCCCCceEEEEEcCCCCcccH----HHHHHHHH--------hhcceEEEEecchhHH--HHHHHhC--CC-HH
Q 004467 85 ALKSYKGERNGNEYLINLIDSPGHVDFS----SEVTAALR--------ITDGALVVVDCIEGVC--MYASKFG--VD-ES 147 (752)
Q Consensus 85 ~~~~~~~~~~~~~~~inliDtPGh~df~----~e~~~~l~--------~~D~avlvvda~~Gv~--~~~~~~~--~p-~~ 147 (752)
....+. .....+|.+.||||||...+. .|+....+ ..|..++|+||..|-. ..+..+. ++ .-
T Consensus 185 v~~~l~-~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~~~~~~g 263 (318)
T PRK10416 185 AFDAIQ-AAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHEAVGLTG 263 (318)
T ss_pred HHHHHH-HHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHhhCCCCE
Confidence 001111 112246889999999965433 33333333 2567899999998865 3334332 22 24
Q ss_pred HHHHHhhCC
Q 004467 148 KMMERLWGE 156 (752)
Q Consensus 148 ~~inkldg~ 156 (752)
+++||+|+.
T Consensus 264 iIlTKlD~t 272 (318)
T PRK10416 264 IILTKLDGT 272 (318)
T ss_pred EEEECCCCC
Confidence 566888843
No 312
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.49 E-value=0.00019 Score=69.13 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
-.+|+++|.+|+|||||+++|+...
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~ 126 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKK 126 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCC
Confidence 4579999999999999999997543
No 313
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.49 E-value=0.00031 Score=77.86 Aligned_cols=38 Identities=29% Similarity=0.367 Sum_probs=30.6
Q ss_pred ceEEEEEcCCCCcc-------cHHHHHHHHHhhcceEEEEecchh
Q 004467 97 EYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG 134 (752)
Q Consensus 97 ~~~inliDtPGh~d-------f~~e~~~~l~~~D~avlvvda~~G 134 (752)
...++++||||-.+ +.....+.++.||+.++|||+..+
T Consensus 71 ~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~ 115 (396)
T PRK09602 71 FIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASGS 115 (396)
T ss_pred eeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCC
Confidence 35789999999532 444777889999999999999854
No 314
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.48 E-value=0.00014 Score=76.62 Aligned_cols=128 Identities=18% Similarity=0.246 Sum_probs=68.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCC-CccccCCc-----hhHh------HhcceeccceEEEEEeecc-c
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG-DVRMTDTR-----ADEA------ERGITIKSTGISLYYEMTD-D 84 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g-~~~~~D~~-----~~E~------eRgiTi~s~~~~~~~~~~~-~ 84 (752)
..+.|+++|+.|+||||++-.|..... + .| ++.+.|.+ ..|+ .+|+.+... ...... .
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~---~--~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~----~~~~dp~~ 141 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK---K--QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQ----KEGADPAA 141 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---h--cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeC----CCCCCHHH
Confidence 468999999999999999999964431 1 22 23233322 1332 233222100 000000 0
Q ss_pred h-hccccCCCCCCceEEEEEcCCCCcccHHHHHHHH-------H-----hhcceEEEEecchhHH--HHHHH----hCCC
Q 004467 85 A-LKSYKGERNGNEYLINLIDSPGHVDFSSEVTAAL-------R-----ITDGALVVVDCIEGVC--MYASK----FGVD 145 (752)
Q Consensus 85 ~-~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l-------~-----~~D~avlvvda~~Gv~--~~~~~----~~~p 145 (752)
. ...+. ....++|.+.||||||......+....| . .+|..++|+|+..|-. ..+.. .++
T Consensus 142 ~~~~~l~-~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~- 219 (272)
T TIGR00064 142 VAFDAIQ-KAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGL- 219 (272)
T ss_pred HHHHHHH-HHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCC-
Confidence 0 00010 0112468899999999765544433222 2 2899999999998754 22222 232
Q ss_pred HHHHHHHhhCC
Q 004467 146 ESKMMERLWGE 156 (752)
Q Consensus 146 ~~~~inkldg~ 156 (752)
.-+++||+|.+
T Consensus 220 ~g~IlTKlDe~ 230 (272)
T TIGR00064 220 TGIILTKLDGT 230 (272)
T ss_pred CEEEEEccCCC
Confidence 23456888843
No 315
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.45 E-value=0.00032 Score=75.37 Aligned_cols=38 Identities=32% Similarity=0.374 Sum_probs=29.8
Q ss_pred ceEEEEEcCCCCc----cc---HHHHHHHHHhhcceEEEEecchh
Q 004467 97 EYLINLIDSPGHV----DF---SSEVTAALRITDGALVVVDCIEG 134 (752)
Q Consensus 97 ~~~inliDtPGh~----df---~~e~~~~l~~~D~avlvvda~~G 134 (752)
...+.|+||||.. .+ .......++.||+.++|||+..+
T Consensus 68 ~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~ 112 (318)
T cd01899 68 YVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASGG 112 (318)
T ss_pred cceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCC
Confidence 4579999999963 23 23566779999999999999754
No 316
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.45 E-value=0.00045 Score=64.85 Aligned_cols=103 Identities=18% Similarity=0.186 Sum_probs=69.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
++--.|-|+|.-||||||+..+|+...- . ... -|.....-++.++
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~---~------------~i~----pt~gf~Iktl~~~---------------- 58 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDT---D------------TIS----PTLGFQIKTLEYK---------------- 58 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCc---c------------ccC----CccceeeEEEEec----------------
Confidence 3344578999999999999999953220 0 000 1222222334454
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHH---HHhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYA---SKFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~---~~~~~p~~~~inkld 154 (752)
.|.+|+-|--|..-+-.-=-.-...+|+.|.|||+.+-.. .++ +-.|.|.+++.||-|
T Consensus 59 ~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~d 128 (185)
T KOG0073|consen 59 GYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQD 128 (185)
T ss_pred ceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCc
Confidence 8999999999988776555666778999999999976543 111 124677788888776
No 317
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.44 E-value=0.00013 Score=72.52 Aligned_cols=75 Identities=27% Similarity=0.370 Sum_probs=43.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
--||.++|..|.|||||++.|. .+++.++ . ..|..++--..-+.|++. +-... .++-.-
T Consensus 46 ~FNIMVVgqSglgkstlinTlf-~s~v~~~--s----~~~~~~~p~pkT~eik~~--thvie------------E~gVkl 104 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLF-KSHVSDS--S----SSDNSAEPIPKTTEIKSI--THVIE------------EKGVKL 104 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHH-HHHHhhc--c----CCCcccCcccceEEEEee--eeeee------------ecceEE
Confidence 4699999999999999999984 4443332 1 122222111111222221 11111 123356
Q ss_pred EEEEEcCCCCcccHHH
Q 004467 99 LINLIDSPGHVDFSSE 114 (752)
Q Consensus 99 ~inliDtPGh~df~~e 114 (752)
++|+|||||+.|++.+
T Consensus 105 kltviDTPGfGDqInN 120 (336)
T KOG1547|consen 105 KLTVIDTPGFGDQINN 120 (336)
T ss_pred EEEEecCCCcccccCc
Confidence 8999999999998643
No 318
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.40 E-value=5.9e-05 Score=76.29 Aligned_cols=131 Identities=15% Similarity=0.193 Sum_probs=68.5
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccc--cCCCc-cccCCchhHhHhcce---eccceEEEEEeeccchh-cc
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDV-RMTDTRADEAERGIT---IKSTGISLYYEMTDDAL-KS 88 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~--~~g~~-~~~D~~~~E~eRgiT---i~s~~~~~~~~~~~~~~-~~ 88 (752)
...++||+++|+.|+|||||+++|+...+.-.+- ..++. .-.|....+ +.|.. +..+.+. ....... ..
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~-~~~~~~~~l~~gcic---~~~~~~~~~~ 94 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLR-KYGAPAIQINTGKEC---HLDAHMVAHA 94 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHH-HcCCcEEEEcCCCcc---cCChHHHHHH
Confidence 3579999999999999999999999875421110 01111 112322222 22321 1111111 0000000 11
Q ss_pred ccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---HHHHHhCCCHHHHHHHhh
Q 004467 89 YKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---MYASKFGVDESKMMERLW 154 (752)
Q Consensus 89 ~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---~~~~~~~~p~~~~inkld 154 (752)
+. .....+..+.||+|-|....-. ......+..++|+|+..+.. .+....+.|.++++||+|
T Consensus 95 l~-~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~~~~~~~~~a~iiv~NK~D 159 (207)
T TIGR00073 95 LE-DLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPLKYPGMFKEADLIVINKAD 159 (207)
T ss_pred HH-HhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhhhhHhHHhhCCEEEEEHHH
Confidence 11 1111245778999999311110 11123566678999987754 333445667788899998
No 319
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.38 E-value=2.1e-05 Score=81.03 Aligned_cols=56 Identities=13% Similarity=0.192 Sum_probs=32.3
Q ss_pred EEEEEcCCCCcccHHH------HHHHHHh--hcceEEEEecchh--HH----------HHHHHhCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSE------VTAALRI--TDGALVVVDCIEG--VC----------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e------~~~~l~~--~D~avlvvda~~G--v~----------~~~~~~~~p~~~~inkld 154 (752)
.+.|+||||...|..- ....|.. .=++|.++|+..= .. ...-++++|.+.++||+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccC
Confidence 6789999997766533 3333332 2367888888742 11 223458999999999999
No 320
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.36 E-value=0.00066 Score=77.65 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
...+|+++|..|+|||||+++|+...
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGek 142 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEV 142 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccc
Confidence 34689999999999999999997543
No 321
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.34 E-value=0.00032 Score=75.13 Aligned_cols=58 Identities=14% Similarity=0.113 Sum_probs=40.6
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH--HHHH-HhCCCHHHHHHHhhCC
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--MYAS-KFGVDESKMMERLWGE 156 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~--~~~~-~~~~p~~~~inkldg~ 156 (752)
.++.+.||||||... .....+..+|..+++.+...|-. .+.. -.++|.++++||+|..
T Consensus 125 ~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~~el~~~~~~l~~~~~ivv~NK~Dl~ 185 (300)
T TIGR00750 125 AGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTGDDLQGIKAGLMEIADIYVVNKADGE 185 (300)
T ss_pred CCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCccHHHHHHHHHHhhhccEEEEEccccc
Confidence 478999999999652 22335778899998876665443 2222 2567888999999954
No 322
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.32 E-value=0.00036 Score=68.33 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~ 42 (752)
..++++|.+++|||||+++|+..
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~~ 140 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKRS 140 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCc
Confidence 57999999999999999999643
No 323
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.30 E-value=0.0005 Score=76.22 Aligned_cols=131 Identities=20% Similarity=0.226 Sum_probs=69.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCC-Cccc--cCC---chhHhHhcceeccceEEEEE--eeccc--hh-c
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG-DVRM--TDT---RADEAERGITIKSTGISLYY--EMTDD--AL-K 87 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g-~~~~--~D~---~~~E~eRgiTi~s~~~~~~~--~~~~~--~~-~ 87 (752)
.+.|+++|..|+||||++..|..... + .| ++.+ .|. ...||-|...-... +.+.- ...++ .+ .
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~---~--~G~kV~lV~~D~~R~aA~eQLk~~a~~~~-vp~~~~~~~~dp~~i~~~ 173 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQ---R--KGFKPCLVCADTFRAGAFDQLKQNATKAR-IPFYGSYTESDPVKIASE 173 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---H--CCCCEEEEcCcccchhHHHHHHHHhhccC-CeEEeecCCCCHHHHHHH
Confidence 56899999999999999999964431 1 12 1111 232 12233222211111 11111 10010 00 0
Q ss_pred cccCCCCCCceEEEEEcCCCCcccH----HHHHHHHH--hhcceEEEEecchhHH--HHHHHhC--C-CHHHHHHHhhCC
Q 004467 88 SYKGERNGNEYLINLIDSPGHVDFS----SEVTAALR--ITDGALVVVDCIEGVC--MYASKFG--V-DESKMMERLWGE 156 (752)
Q Consensus 88 ~~~~~~~~~~~~inliDtPGh~df~----~e~~~~l~--~~D~avlvvda~~Gv~--~~~~~~~--~-p~~~~inkldg~ 156 (752)
.+. ..+..+|.+.||||||..... .|+..-.. ..|-.+||+||..|-. ..++.|+ + +.-+++||+|++
T Consensus 174 ~l~-~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 174 GVE-KFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred HHH-HHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEEEECccCC
Confidence 000 011136889999999965443 33333322 3578999999998843 3445543 2 245567999954
No 324
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.00037 Score=67.63 Aligned_cols=107 Identities=15% Similarity=0.159 Sum_probs=75.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
..--|.++|..|.|||.|+-++ .+ |..+++...-|-++-...++.. +++.
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf-----------~~-----~~f~e~~~sTIGVDf~~rt~e~--------------~gk~ 57 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRF-----------KD-----DTFTESYISTIGVDFKIRTVEL--------------DGKT 57 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhh-----------cc-----CCcchhhcceeeeEEEEEEeee--------------cceE
Confidence 3456889999999999999888 22 2233333333444444444443 3456
Q ss_pred eEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHHH------hCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYASK------FGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~~------~~~p~~~~inkld 154 (752)
-++.+=||.|...|-.-+.+--|.|+|+|+|.|.+.--. .+..+ -++|.+.+-||.|
T Consensus 58 iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~D 125 (205)
T KOG0084|consen 58 IKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCD 125 (205)
T ss_pred EEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccc
Confidence 789999999999999889999999999999999997433 33222 2466777778877
No 325
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.25 E-value=0.00034 Score=78.13 Aligned_cols=132 Identities=18% Similarity=0.160 Sum_probs=70.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCC-Ccc--ccCC-ch--hHhHhcceeccceEEEEEee-ccc--hhcc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG-DVR--MTDT-RA--DEAERGITIKSTGISLYYEM-TDD--ALKS 88 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g-~~~--~~D~-~~--~E~eRgiTi~s~~~~~~~~~-~~~--~~~~ 88 (752)
..++|.++|+.|+||||++..|..... + .| ++. ..|. ++ .|+-+.+.-....-.+.... .+. .+..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~---~--~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~ 168 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK---K--KGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKE 168 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---H--cCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHH
Confidence 467899999999999999999964432 1 12 111 1222 11 33333221111111111110 000 0100
Q ss_pred ccCCCCCCceEEEEEcCCCCcccHHHH------HHHHHhhcceEEEEecchhHH--HHHHHhC--CCH-HHHHHHhhCC
Q 004467 89 YKGERNGNEYLINLIDSPGHVDFSSEV------TAALRITDGALVVVDCIEGVC--MYASKFG--VDE-SKMMERLWGE 156 (752)
Q Consensus 89 ~~~~~~~~~~~inliDtPGh~df~~e~------~~~l~~~D~avlvvda~~Gv~--~~~~~~~--~p~-~~~inkldg~ 156 (752)
... ....+.+.||||||...+..+. +.++..+|..++|+||..|-. ..++.++ ++. -+++||+|+.
T Consensus 169 al~--~~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 169 GLE--KFKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred HHH--HhhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 000 1123478999999976654443 344556899999999998854 4445443 333 3456999943
No 326
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.25 E-value=0.00042 Score=66.55 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=23.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
....+++++|++++|||||+++|+...
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~ 124 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKL 124 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccc
Confidence 345789999999999999999997543
No 327
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.25 E-value=0.00048 Score=70.50 Aligned_cols=91 Identities=20% Similarity=0.191 Sum_probs=55.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.++..|+|+|..++|||||+++|+....... +.+.. .-..|||-+ |..+ ...+.
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~--------~~~~~-~~~T~gi~~--------~~~~---------~~~~~ 58 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFD--------VMDTS-QQTTKGIWM--------WSVP---------FKLGK 58 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeE--------ecCCC-CCCccceEE--------Eecc---------ccCCC
Confidence 5688999999999999999999965421110 11110 111234432 2210 00123
Q ss_pred ceEEEEEcCCCCccc------HHHHHHHHHh--hcceEEEEecch
Q 004467 97 EYLINLIDSPGHVDF------SSEVTAALRI--TDGALVVVDCIE 133 (752)
Q Consensus 97 ~~~inliDtPGh~df------~~e~~~~l~~--~D~avlvvda~~ 133 (752)
++.+.++||||..+- ....+.++.. +|..|+.+++..
T Consensus 59 ~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 59 EHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred cceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 578999999996543 2234666666 999888888764
No 328
>COG3596 Predicted GTPase [General function prediction only]
Probab=97.24 E-value=0.0011 Score=67.83 Aligned_cols=106 Identities=16% Similarity=0.094 Sum_probs=68.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCC-CccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~-i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~ 95 (752)
...-||-|.|..|+|||+|+++|...... ++. .|. -+|-.. -.|. .+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~--vg~--~t~~~~---------------~~~~-------------~~ 84 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSK--VGV--GTDITT---------------RLRL-------------SY 84 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeee--ccc--CCCchh---------------hHHh-------------hc
Confidence 45678899999999999999999743221 111 120 011000 0111 12
Q ss_pred CceEEEEEcCCCCcc-------cHHHHHHHHHhhcceEEEEecchhHH---------HHHHHhCCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVC---------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~d-------f~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~~~~~p~~~~inkld 154 (752)
..+.++|.||||..| +.....--|.-.|..++++|+.+--- -...-++.+.+++||..|
T Consensus 85 ~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D 159 (296)
T COG3596 85 DGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQAD 159 (296)
T ss_pred cccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhh
Confidence 357899999999877 55557777889999999999987432 222234466777788777
No 329
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.23 E-value=0.00039 Score=69.63 Aligned_cols=58 Identities=19% Similarity=0.072 Sum_probs=41.1
Q ss_pred CCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH------HHHH---H--hCCCHHHHHHHhh
Q 004467 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC------MYAS---K--FGVDESKMMERLW 154 (752)
Q Consensus 95 ~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~------~~~~---~--~~~p~~~~inkld 154 (752)
++.+.++|.||+|..+... ....+.+|++|+|.|.+.--. .+.. . -++|.+++.||+|
T Consensus 63 ~~~v~l~iwDTaG~~~~~~--~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~D 131 (195)
T cd01873 63 GVSVSLRLWDTFGDHDKDR--RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLD 131 (195)
T ss_pred CEEEEEEEEeCCCChhhhh--cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchh
Confidence 4578999999999865322 235678999999999876532 1222 1 2578788889998
No 330
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.19 E-value=0.00014 Score=69.25 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=29.1
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchh
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~G 134 (752)
.++.+.||||||.. ..+...++.+|-+|+|+....+
T Consensus 90 ~~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~ 125 (148)
T cd03114 90 AGFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAG 125 (148)
T ss_pred cCCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCch
Confidence 36899999999953 4456799999999999888844
No 331
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.15 E-value=0.0005 Score=73.15 Aligned_cols=76 Identities=24% Similarity=0.343 Sum_probs=47.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhH-hHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADE-AERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E-~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
-.-||.++|..|.||||+++.|+... ..+. .-.|....+ .+.++.|..+...+.= ++-
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~-l~~~------~~~~~~~~~~~~~~~~i~~~~~~l~e--------------~~~ 80 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTS-LVDE------TEIDDIRAEGTSPTLEIKITKAELEE--------------DGF 80 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhh-ccCC------CCccCcccccCCcceEEEeeeeeeec--------------CCe
Confidence 34699999999999999999997662 1111 011111111 3444555444433321 233
Q ss_pred ceEEEEEcCCCCcccHHH
Q 004467 97 EYLINLIDSPGHVDFSSE 114 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e 114 (752)
...+|+|||||..||+.+
T Consensus 81 ~~~l~vIDtpGfGD~idN 98 (373)
T COG5019 81 HLNLTVIDTPGFGDFIDN 98 (373)
T ss_pred EEEEEEeccCCccccccc
Confidence 568999999999999765
No 332
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=97.12 E-value=0.00075 Score=63.00 Aligned_cols=106 Identities=15% Similarity=0.221 Sum_probs=70.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHh--cceeccceEEEEEeeccchhccccCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAER--GITIKSTGISLYYEMTDDALKSYKGERN 94 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eR--giTi~s~~~~~~~~~~~~~~~~~~~~~~ 94 (752)
...-.|-+||..|.|||+|+-++...+ .+. |..- |+-.++..++ .+
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~--fd~--------------~~~~tIGvDFkvk~m~----------------vd 56 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNT--FDD--------------LHPTTIGVDFKVKVMQ----------------VD 56 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcc--cCc--------------cCCceeeeeEEEEEEE----------------Ec
Confidence 345678899999999999998774322 111 1111 1111111111 23
Q ss_pred CCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHH-------HhCCCHHHHHHHhh
Q 004467 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYAS-------KFGVDESKMMERLW 154 (752)
Q Consensus 95 ~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~-------~~~~p~~~~inkld 154 (752)
++.+++.+-||.|.+.|-.-+-+--|.|.|+|+|-|.+.--. .+++ ..++-.++|-||+|
T Consensus 57 g~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiD 128 (209)
T KOG0080|consen 57 GKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKID 128 (209)
T ss_pred CceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhccccc
Confidence 467899999999999998888888899999999999886433 3333 23444566678888
No 333
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.09 E-value=0.00071 Score=67.33 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=22.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
+..+++++|.+|+|||||+++|+...
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999998654
No 334
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.08 E-value=0.00054 Score=72.42 Aligned_cols=73 Identities=23% Similarity=0.324 Sum_probs=39.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
-||.++|..|.|||||++.|+........ ...+.......+..++......+.- ++-...
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~l~e--------------~~~~l~ 64 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISED------SSIPPPSASISRTLEIEERTVELEE--------------NGVKLN 64 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------------S------SCEEEEEEEEEEEE--------------TCEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhccccccc------ccccccccccccccceeeEEEEecc--------------CCcceE
Confidence 48999999999999999999653321111 0011111122333444433322211 223578
Q ss_pred EEEEcCCCCcccH
Q 004467 100 INLIDSPGHVDFS 112 (752)
Q Consensus 100 inliDtPGh~df~ 112 (752)
+++|||||+.|..
T Consensus 65 LtiiDTpGfGd~i 77 (281)
T PF00735_consen 65 LTIIDTPGFGDNI 77 (281)
T ss_dssp EEEEEEC-CSSSS
T ss_pred EEEEeCCCccccc
Confidence 9999999987764
No 335
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.06 E-value=0.00058 Score=76.98 Aligned_cols=132 Identities=18% Similarity=0.194 Sum_probs=64.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccc--cCCc---hhHhHhcceeccceEEEEEeeccchhccccCC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRM--TDTR---ADEAERGITIKSTGISLYYEMTDDALKSYKGE 92 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~--~D~~---~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~ 92 (752)
.-.+|+|+|..|+||||++..|....-.-.. ..++.+ +|.. ..|+-+...-... +.+........+....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~--gkkVaLIdtDtyRigA~EQLk~ya~iLg-v~v~~a~d~~~L~~aL-- 423 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHA--PRDVALVTTDTQRVGGREQLHSYGRQLG-IAVHEADSAESLLDLL-- 423 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcC--CCceEEEecccccccHHHHHHHhhcccC-ceeEecCcHHHHHHHH--
Confidence 4579999999999999999999653211000 012222 2321 1233322211111 1111111111111100
Q ss_pred CCCCceEEEEEcCCCCcccHHHHHHH---HH--hhcceEEEEecchhHH---HHHHHhC--CCHHHHHHHhh
Q 004467 93 RNGNEYLINLIDSPGHVDFSSEVTAA---LR--ITDGALVVVDCIEGVC---MYASKFG--VDESKMMERLW 154 (752)
Q Consensus 93 ~~~~~~~inliDtPGh~df~~e~~~~---l~--~~D~avlvvda~~Gv~---~~~~~~~--~p~~~~inkld 154 (752)
....++.+.||||||........... +. ..+..+|||++..+.. ..++.+. .+.-+++||+|
T Consensus 424 ~~l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii~~f~~~~~~gvILTKlD 495 (559)
T PRK12727 424 ERLRDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLD 495 (559)
T ss_pred HHhccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHHHHHHHhhCCeEEEEecCc
Confidence 01235789999999965443332211 11 2346788999997654 2333332 23345668887
No 336
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.0011 Score=65.14 Aligned_cols=110 Identities=16% Similarity=0.125 Sum_probs=74.4
Q ss_pred ccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCC
Q 004467 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (752)
Q Consensus 15 ~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~ 94 (752)
..+..-.|.++|-.++|||.++.++...+=.- -..+.+.+.|...- -..+
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~-----------------------~~~sTiGIDFk~kt-------i~l~ 57 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNT-----------------------SFISTIGIDFKIKT-------IELD 57 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcC-----------------------CccceEEEEEEEEE-------EEeC
Confidence 34567789999999999999999885332110 01111222222100 0112
Q ss_pred CCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HH---HHH---hCCCHHHHHHHhh
Q 004467 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MY---ASK---FGVDESKMMERLW 154 (752)
Q Consensus 95 ~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~---~~~---~~~p~~~~inkld 154 (752)
+....+.+.||.|...|-.-.-+..+-|++++||+|-+.... .+ .++ -++|.+.|-||+|
T Consensus 58 g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D 128 (207)
T KOG0078|consen 58 GKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCD 128 (207)
T ss_pred CeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccc
Confidence 346788999999999998888888899999999999987654 22 222 2677888889988
No 337
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.05 E-value=0.00043 Score=67.73 Aligned_cols=58 Identities=21% Similarity=0.481 Sum_probs=36.0
Q ss_pred CceEEEEEcCCCCcccHHHHHHHH----H--hhcceEEEEecchhHH------HHHHHhCCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAAL----R--ITDGALVVVDCIEGVC------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l----~--~~D~avlvvda~~Gv~------~~~~~~~~p~~~~inkld 154 (752)
.++.+.+|||||...+..+....+ . ..|.+++|+|+..+-. .+.+..++ .-+++||+|
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~~~~~~-~~viltk~D 150 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFNEALGI-TGVILTKLD 150 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHhhCCC-CEEEEECCc
Confidence 356788999999864443333332 2 3899999999986643 22233343 234447766
No 338
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.05 E-value=0.0013 Score=71.52 Aligned_cols=134 Identities=11% Similarity=0.064 Sum_probs=69.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCC-Cc--cccCCc---hhHhHhcceeccceEEEEEeeccchhc-ccc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG-DV--RMTDTR---ADEAERGITIKSTGISLYYEMTDDALK-SYK 90 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g-~~--~~~D~~---~~E~eRgiTi~s~~~~~~~~~~~~~~~-~~~ 90 (752)
..+.|+++|+.|+||||++..|..... . .| ++ ..+|.. ..||-+...-... +.+.-......+. .+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~---~--~GkkVglI~aDt~RiaAvEQLk~yae~lg-ipv~v~~d~~~L~~aL~ 313 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH---G--KKKTVGFITTDHSRIGTVQQLQDYVKTIG-FEVIAVRDEAAMTRALT 313 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH---H--cCCcEEEEecCCcchHHHHHHHHHhhhcC-CcEEecCCHHHHHHHHH
Confidence 358999999999999999999954321 1 12 11 123332 3344333211111 1111111111111 111
Q ss_pred CCCCCCceEEEEEcCCCCccc----HHHHHHHHH--hhcceEEEEecchhHH---HHHHHhC-CCH-HHHHHHhhCCC
Q 004467 91 GERNGNEYLINLIDSPGHVDF----SSEVTAALR--ITDGALVVVDCIEGVC---MYASKFG-VDE-SKMMERLWGEN 157 (752)
Q Consensus 91 ~~~~~~~~~inliDtPGh~df----~~e~~~~l~--~~D~avlvvda~~Gv~---~~~~~~~-~p~-~~~inkldg~~ 157 (752)
...+..++.+.||||||.... ..++.+-+. ..|..+||+||+.+-. .+++.|+ ++. -++++|+|+..
T Consensus 314 ~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI~TKLDET~ 391 (436)
T PRK11889 314 YFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETA 391 (436)
T ss_pred HHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEEEEcccCCC
Confidence 111112478899999997544 334444333 3477899999975543 4444443 222 34559999443
No 339
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.03 E-value=0.00026 Score=70.77 Aligned_cols=133 Identities=18% Similarity=0.190 Sum_probs=67.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCc---hhHhHhcceeccceEEEEEeec-c--chhccccCCC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTR---ADEAERGITIKSTGISLYYEMT-D--DALKSYKGER 93 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~---~~E~eRgiTi~s~~~~~~~~~~-~--~~~~~~~~~~ 93 (752)
+.|+++|+.|+||||++-.|-++.....+ ..+ .-.+|.. ..||-+-..-....-.+.-... + ..+.......
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~-~v~-lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGK-KVA-LISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT---EE-EEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccc-cce-eecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 57899999999999999999655432211 111 1123432 2344333322222111111100 0 0000000001
Q ss_pred CCCceEEEEEcCCCCcccHHHHHHHHH------hhcceEEEEecchhHH------HHHHHhCCCHHHHHHHhhC
Q 004467 94 NGNEYLINLIDSPGHVDFSSEVTAALR------ITDGALVVVDCIEGVC------MYASKFGVDESKMMERLWG 155 (752)
Q Consensus 94 ~~~~~~inliDtPGh~df~~e~~~~l~------~~D~avlvvda~~Gv~------~~~~~~~~p~~~~inkldg 155 (752)
+.+++.+.||||||......+...-++ ..|-.+||+||..|-. .+.+.+++.. ++++|+|.
T Consensus 80 ~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~-lIlTKlDe 152 (196)
T PF00448_consen 80 RKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDG-LILTKLDE 152 (196)
T ss_dssp HHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCE-EEEESTTS
T ss_pred hhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCce-EEEEeecC
Confidence 113467899999997665544333222 4578999999999865 2333344443 33578883
No 340
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.02 E-value=0.00024 Score=77.17 Aligned_cols=119 Identities=18% Similarity=0.133 Sum_probs=59.8
Q ss_pred HHHHhhcccC-CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchh
Q 004467 8 GLRRIMDFKH-NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDAL 86 (752)
Q Consensus 8 ~~~~~~~~~~-~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~ 86 (752)
+|++.++..+ ...||||+|..|+|||||+|+|. |.=+. +.|. =..|.+ .++.....|..
T Consensus 23 ~i~~~l~~~~~~~l~IaV~G~sGsGKSSfINalr---Gl~~~-d~~a----------A~tGv~-etT~~~~~Y~~----- 82 (376)
T PF05049_consen 23 KIREALKDIDNAPLNIAVTGESGSGKSSFINALR---GLGHE-DEGA----------APTGVV-ETTMEPTPYPH----- 82 (376)
T ss_dssp HHHHHHHHHHH--EEEEEEESTTSSHHHHHHHHT---T--TT-STTS------------SSSH-SCCTS-EEEE------
T ss_pred HHHHHHHHhhcCceEEEEECCCCCCHHHHHHHHh---CCCCC-CcCc----------CCCCCC-cCCCCCeeCCC-----
Confidence 3444444332 34599999999999999999993 21111 0111 011221 11112223331
Q ss_pred ccccCCCCCCceEEEEEcCCCCc--ccHHHHHH---HHHhhcceEEEEecchhHH-----HHHHHhCCCHHHHHHHhh
Q 004467 87 KSYKGERNGNEYLINLIDSPGHV--DFSSEVTA---ALRITDGALVVVDCIEGVC-----MYASKFGVDESKMMERLW 154 (752)
Q Consensus 87 ~~~~~~~~~~~~~inliDtPGh~--df~~e~~~---~l~~~D~avlvvda~~Gv~-----~~~~~~~~p~~~~inkld 154 (752)
.+.-.+.|-|.||.. +|..+-.- .+...|.-|+|.+..=... +.++++|.|..+|-+|+|
T Consensus 83 --------p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~rf~~ndv~La~~i~~~gK~fyfVRTKvD 152 (376)
T PF05049_consen 83 --------PKFPNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSERFTENDVQLAKEIQRMGKKFYFVRTKVD 152 (376)
T ss_dssp --------SS-TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESSS--HHHHHHHHHHHHTT-EEEEEE--HH
T ss_pred --------CCCCCCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCCCCchhhHHHHHHHHHcCCcEEEEEeccc
Confidence 112368889999953 44333211 4678898777666554333 666788999888889998
No 341
>PRK14974 cell division protein FtsY; Provisional
Probab=97.02 E-value=0.0008 Score=72.69 Aligned_cols=134 Identities=19% Similarity=0.195 Sum_probs=67.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCC-Ccc--ccCCc---hhHhHhcceeccc--eEEEEEeecc-chh-c
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG-DVR--MTDTR---ADEAERGITIKST--GISLYYEMTD-DAL-K 87 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g-~~~--~~D~~---~~E~eRgiTi~s~--~~~~~~~~~~-~~~-~ 87 (752)
+.+.|+++|.+|+||||++..|..... . .| ++. ..|.. ..||-+...-... ...-.+.... ..+ .
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~---~--~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ 213 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK---K--NGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYD 213 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH---H--cCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHH
Confidence 357899999999999998888864321 1 11 111 22321 1233221111111 1111111000 000 0
Q ss_pred cccCCCCCCceEEEEEcCCCCcccHHHHHHHH----H--hhcceEEEEecchhHH--HHHHHh----CCCHHHHHHHhhC
Q 004467 88 SYKGERNGNEYLINLIDSPGHVDFSSEVTAAL----R--ITDGALVVVDCIEGVC--MYASKF----GVDESKMMERLWG 155 (752)
Q Consensus 88 ~~~~~~~~~~~~inliDtPGh~df~~e~~~~l----~--~~D~avlvvda~~Gv~--~~~~~~----~~p~~~~inkldg 155 (752)
.++ ..+..++.+.||||||......+....| + ..|..++|+||..|-. .+++.+ ++. -+++||+|+
T Consensus 214 ai~-~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~-giIlTKlD~ 291 (336)
T PRK14974 214 AIE-HAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGID-GVILTKVDA 291 (336)
T ss_pred HHH-HHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCC-EEEEeeecC
Confidence 000 0112356799999999764333333333 2 4689999999998843 333433 332 345689995
Q ss_pred CCC
Q 004467 156 ENF 158 (752)
Q Consensus 156 ~~~ 158 (752)
+..
T Consensus 292 ~~~ 294 (336)
T PRK14974 292 DAK 294 (336)
T ss_pred CCC
Confidence 433
No 342
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.02 E-value=0.00078 Score=69.92 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~ 42 (752)
+.++++|++|+|||||+++|+..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhh
Confidence 47899999999999999999754
No 343
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.99 E-value=0.00078 Score=71.68 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~ 42 (752)
+.++++|+.|+|||||+++|+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~ 184 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPD 184 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhch
Confidence 68999999999999999999644
No 344
>PRK12288 GTPase RsgA; Reviewed
Probab=96.98 E-value=0.00051 Score=74.75 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHH
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~ 42 (752)
.++|+|.+|+|||||+++|+..
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~ 228 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPE 228 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccc
Confidence 4799999999999999999744
No 345
>PRK10867 signal recognition particle protein; Provisional
Probab=96.93 E-value=0.0013 Score=73.29 Aligned_cols=133 Identities=21% Similarity=0.258 Sum_probs=66.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC-ccc--cC-Cch--hHhHhcceeccceEEEEEee--cc--chhcc
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-VRM--TD-TRA--DEAERGITIKSTGISLYYEM--TD--DALKS 88 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~-~~~--~D-~~~--~E~eRgiTi~s~~~~~~~~~--~~--~~~~~ 88 (752)
.+.|.++|+.|+||||++-.|..+...- .|. +.+ .| +++ .||-+...-... +.+.... .+ .....
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~----~G~kV~lV~~D~~R~aa~eQL~~~a~~~g-v~v~~~~~~~dp~~i~~~ 174 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKK----KKKKVLLVAADVYRPAAIEQLKTLGEQIG-VPVFPSGDGQDPVDIAKA 174 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHh----cCCcEEEEEccccchHHHHHHHHHHhhcC-CeEEecCCCCCHHHHHHH
Confidence 5789999999999999888885432100 021 111 22 111 222211111111 1111100 01 11110
Q ss_pred ccCCCCCCceEEEEEcCCCCccc----HHHHHHHHH--hhcceEEEEecchhHH--HHHHHhC--CCH-HHHHHHhhCC
Q 004467 89 YKGERNGNEYLINLIDSPGHVDF----SSEVTAALR--ITDGALVVVDCIEGVC--MYASKFG--VDE-SKMMERLWGE 156 (752)
Q Consensus 89 ~~~~~~~~~~~inliDtPGh~df----~~e~~~~l~--~~D~avlvvda~~Gv~--~~~~~~~--~p~-~~~inkldg~ 156 (752)
........++.+.||||||..-. ..++..-.. ..|..++|+|+..|-. .+++.++ ++. -+++||+|++
T Consensus 175 a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~~~~~i~giIlTKlD~~ 253 (433)
T PRK10867 175 ALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFNEALGLTGVILTKLDGD 253 (433)
T ss_pred HHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 01111234678999999995433 333222222 4688899999998744 4444443 332 3456999943
No 346
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=96.86 E-value=0.0014 Score=61.93 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=19.5
Q ss_pred EEEEEeCCCCChHHHHHHHHH
Q 004467 21 NMSVIAHVDHGKSTLTDSLVA 41 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~ 41 (752)
.++++|..++|||||+++|+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~ 105 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVG 105 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 799999999999999999964
No 347
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=96.84 E-value=0.0094 Score=50.90 Aligned_cols=72 Identities=19% Similarity=0.303 Sum_probs=51.3
Q ss_pred EEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEe--
Q 004467 287 LYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-- 364 (752)
Q Consensus 287 ~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~-- 364 (752)
+.|.++|.....|. ++.+||.+|+|++|+.+.+++.+ + .++..++..|... ..++++|.+|+-|+|.
T Consensus 3 ~~V~~vf~~~~~g~-vag~kV~~G~l~~g~~v~vlr~~-----~-~~~~g~i~sl~~~----~~~v~~a~~G~ecgi~l~ 71 (84)
T cd03692 3 AEVRAVFKISKVGN-IAGCYVTDGKIKRNAKVRVLRNG-----E-VIYEGKISSLKRF----KDDVKEVKKGYECGITLE 71 (84)
T ss_pred EEEEEEEECCCCcE-EEEEEEEECEEeCCCEEEEEcCC-----C-EEEEEEEEEEEEc----CcccCEECCCCEEEEEEe
Confidence 44555554445565 89999999999999999998743 1 1333577777643 5679999999999884
Q ss_pred ccccc
Q 004467 365 GLDQF 369 (752)
Q Consensus 365 Gl~~~ 369 (752)
+++++
T Consensus 72 ~~~d~ 76 (84)
T cd03692 72 NFNDI 76 (84)
T ss_pred CcccC
Confidence 44433
No 348
>PRK12289 GTPase RsgA; Reviewed
Probab=96.79 E-value=0.0019 Score=70.35 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHH
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~ 42 (752)
.++|+|++|+|||||+++|+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCc
Confidence 4899999999999999999744
No 349
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.0028 Score=60.99 Aligned_cols=104 Identities=16% Similarity=0.159 Sum_probs=66.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
.+.|+|..+.|||.|+-+...+. . .++..+.+.+.|... .-+.+++.-++
T Consensus 8 KyIiiGd~gVGKSclllrf~~kr-----------F------------~~~hd~TiGvefg~r-------~~~id~k~IKl 57 (216)
T KOG0098|consen 8 KYIIIGDTGVGKSCLLLRFTDKR-----------F------------QPVHDLTIGVEFGAR-------MVTIDGKQIKL 57 (216)
T ss_pred EEEEECCCCccHHHHHHHHhccC-----------c------------cccccceeeeeecee-------EEEEcCceEEE
Confidence 56799999999999998773211 0 112222222332210 00123456789
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHH---HH---hCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYA---SK---FGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~---~~---~~~p~~~~inkld 154 (752)
++-||.||+.|-.-+.+--+.+-|||||-|-+.--. .++ +. .++-.+++-||.|
T Consensus 58 qiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsD 122 (216)
T KOG0098|consen 58 QIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSD 122 (216)
T ss_pred EEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhh
Confidence 999999999998888888899999999999886543 222 22 2333444558888
No 350
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.0017 Score=69.74 Aligned_cols=74 Identities=24% Similarity=0.383 Sum_probs=44.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
-|+.++|..|.|||||++.|+...- .+...+ +..+.+..+..+|.+....+. .++-...
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l------~~~~~~-~~~~~~~~~t~~i~~~~~~ie--------------e~g~~l~ 80 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDL------SGNREV-PGASERIKETVEIESTKVEIE--------------ENGVKLN 80 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhc------cCCccc-CCcccCccccceeeeeeeeec--------------CCCeEEe
Confidence 5899999999999999999976521 111111 222222233333333332221 1233568
Q ss_pred EEEEcCCCCcccHHH
Q 004467 100 INLIDSPGHVDFSSE 114 (752)
Q Consensus 100 inliDtPGh~df~~e 114 (752)
+|+|||||..|+..+
T Consensus 81 LtvidtPGfGD~vdn 95 (366)
T KOG2655|consen 81 LTVIDTPGFGDAVDN 95 (366)
T ss_pred eEEeccCCCcccccc
Confidence 899999999998644
No 351
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.74 E-value=0.0011 Score=73.88 Aligned_cols=132 Identities=19% Similarity=0.212 Sum_probs=66.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC-ccc--cCCc-h--hHhH--hcceeccceEEEEEeeccc--hhcc
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-VRM--TDTR-A--DEAE--RGITIKSTGISLYYEMTDD--ALKS 88 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~-~~~--~D~~-~--~E~e--RgiTi~s~~~~~~~~~~~~--~~~~ 88 (752)
...+.++|+.|+||||++-.|..... .+ .|. +.+ .|.. + .|+- .+.-+....... ....++ ....
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~--~~--~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~-~~~~~P~~i~~~ 173 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK--KK--QGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFAL-GKGQSPVEIARR 173 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH--Hh--CCCeEEEEeccccchHHHHHHHHHHHhcCCceEec-CCCCCHHHHHHH
Confidence 56889999999999999988865421 00 121 111 2311 1 1211 111111111110 110011 0000
Q ss_pred ccCCCCCCceEEEEEcCCCCcccHHHHHHHH------HhhcceEEEEecchhHH--HHHHHhC--CCH-HHHHHHhhC
Q 004467 89 YKGERNGNEYLINLIDSPGHVDFSSEVTAAL------RITDGALVVVDCIEGVC--MYASKFG--VDE-SKMMERLWG 155 (752)
Q Consensus 89 ~~~~~~~~~~~inliDtPGh~df~~e~~~~l------~~~D~avlvvda~~Gv~--~~~~~~~--~p~-~~~inkldg 155 (752)
........++.+.||||||......+....+ ...|..++|+||..|-. .+++.+. ++. -+++||+|+
T Consensus 174 al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~~~v~i~giIlTKlD~ 251 (428)
T TIGR00959 174 ALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLGLTGVVLTKLDG 251 (428)
T ss_pred HHHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHHhhCCCCEEEEeCccC
Confidence 0001122457889999999544333333322 24789999999998744 3444432 332 344699994
No 352
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=96.71 E-value=0.0014 Score=63.34 Aligned_cols=113 Identities=16% Similarity=0.168 Sum_probs=56.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCc----cccCCCccccCCchhHhH--hcceeccceEEEEEeeccchhccc----c
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIA----QEVAGDVRMTDTRADEAE--RGITIKSTGISLYYEMTDDALKSY----K 90 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~----~~~~g~~~~~D~~~~E~e--RgiTi~s~~~~~~~~~~~~~~~~~----~ 90 (752)
.+.++|..|+|||||+.+++......+ ..+.|+. -.|.....+. +=+.+..+.+.+.. .+.....+ .
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~-~~d~~~~~~~~~~v~~l~~GCiCC~~--~~~l~~~l~~l~~ 78 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEV-GIDNQLVVDTDEEIIEMNNGCICCTV--RGDLIRALLDLLE 78 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCcc-chhHHHHhCCCceEEEeCCCEeEeeC--chhHHHHHHHHHH
Confidence 367999999999999999986531110 0012321 1222211110 11222222222211 11111111 1
Q ss_pred C-CCCCCceEEEEEcCCCCcccHHH--------HHHHHHhhcceEEEEecchhHH
Q 004467 91 G-ERNGNEYLINLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVC 136 (752)
Q Consensus 91 ~-~~~~~~~~inliDtPGh~df~~e--------~~~~l~~~D~avlvvda~~Gv~ 136 (752)
. ........+.+|||||-.+-..- ...+...+|..+.|||+.....
T Consensus 79 ~~~~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~ 133 (158)
T cd03112 79 RLDAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQ 133 (158)
T ss_pred HHHhccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHH
Confidence 1 01123467789999997642211 2223446899999999987654
No 353
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.70 E-value=0.0032 Score=60.37 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=21.8
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHH
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLV 40 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll 40 (752)
....+++.++|..++|||||+++|+
T Consensus 98 ~~~~~~~~~ig~~~~Gkssl~~~l~ 122 (156)
T cd01859 98 DGKEGKVGVVGYPNVGKSSIINALK 122 (156)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHh
Confidence 3456778999999999999999996
No 354
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.66 E-value=0.0015 Score=71.99 Aligned_cols=128 Identities=16% Similarity=0.153 Sum_probs=63.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCC-CccccCCch-----hHhHhcceeccceEEEEEeeccchhccccCCC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG-DVRMTDTRA-----DEAERGITIKSTGISLYYEMTDDALKSYKGER 93 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g-~~~~~D~~~-----~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~ 93 (752)
+.++++|..|+||||++..|...... . .| ++.+.|.+. .|+.+...-... +.+.-.. .+..+....
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~-~---~G~~V~Lit~Dt~R~aA~eQLk~yAe~lg-vp~~~~~---~~~~l~~~l 295 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFL-H---MGKSVSLYTTDNYRIAAIEQLKRYADTMG-MPFYPVK---DIKKFKETL 295 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-h---cCCeEEEecccchhhhHHHHHHHHHHhcC-CCeeehH---HHHHHHHHH
Confidence 46899999999999999999753210 0 11 111222111 222221100000 0110000 000111111
Q ss_pred CCCceEEEEEcCCCCcccHHHHHHHH----Hh-----hcceEEEEecchhHH---HHHHHh---CCCHHHHHHHhhCC
Q 004467 94 NGNEYLINLIDSPGHVDFSSEVTAAL----RI-----TDGALVVVDCIEGVC---MYASKF---GVDESKMMERLWGE 156 (752)
Q Consensus 94 ~~~~~~inliDtPGh~df~~e~~~~l----~~-----~D~avlvvda~~Gv~---~~~~~~---~~p~~~~inkldg~ 156 (752)
...++.+.||||||+.....+-...+ +. ..-.+||+||+.|-. ..++.+ ++. -++++|+|+.
T Consensus 296 ~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~-glIlTKLDEt 372 (432)
T PRK12724 296 ARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYR-RILLTKLDEA 372 (432)
T ss_pred HhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCC-EEEEEcccCC
Confidence 12467889999999765443333333 22 225789999999875 333333 333 3445888843
No 355
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.0014 Score=63.15 Aligned_cols=103 Identities=16% Similarity=0.107 Sum_probs=74.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
+.-..|.++|--+|||||++-.|- .|+...+ =-||-..+-.+.|+
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk----------~~E~vtt---------vPTiGfnVE~v~yk---------------- 59 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLK----------LGEIVTT---------VPTIGFNVETVEYK---------------- 59 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeec----------cCCcccC---------CCccccceeEEEEc----------------
Confidence 455678899999999999877661 2321000 12666666666775
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHHH---hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYASK---FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~~---~~~p~~~~inkld 154 (752)
+..+++-|.-|+..+-.--..-.+..++.|+|||+.+-.. +.... .+.|.+++.||.|
T Consensus 60 n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD 129 (181)
T KOG0070|consen 60 NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQD 129 (181)
T ss_pred ceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhh
Confidence 8999999999997766666667788999999999998644 11111 3677888889988
No 356
>PRK13796 GTPase YqeH; Provisional
Probab=96.61 E-value=0.0033 Score=69.26 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
-+++.++|.+|+|||||+++|+...
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhc
Confidence 4689999999999999999998653
No 357
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.58 E-value=0.0037 Score=68.76 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=22.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g 44 (752)
+++.++|.+|+|||||+++|+....
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~ 179 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNN 179 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcc
Confidence 7999999999999999999987543
No 358
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.006 Score=56.21 Aligned_cols=90 Identities=20% Similarity=0.293 Sum_probs=64.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
+-.-.|.++|..|.|||.|+.++ ..|.... |. |-||-....--.-+ .++.
T Consensus 5 kflfkivlvgnagvgktclvrrf--tqglfpp---gq-------------gatigvdfmiktve------------v~ge 54 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRF--TQGLFPP---GQ-------------GATIGVDFMIKTVE------------VNGE 54 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhh--hccCCCC---CC-------------CceeeeeEEEEEEE------------ECCe
Confidence 34457899999999999999988 3454443 31 34554333222221 2345
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~ 136 (752)
..++.+-||.|...|-.-+.+--|-+.+.|||-|.+.-..
T Consensus 55 kiklqiwdtagqerfrsitqsyyrsahalilvydiscqps 94 (213)
T KOG0095|consen 55 KIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPS 94 (213)
T ss_pred EEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcc
Confidence 6788999999999999989999999999999999876543
No 359
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.58 E-value=0.0037 Score=68.92 Aligned_cols=136 Identities=15% Similarity=0.119 Sum_probs=68.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCc--cccCC---chhHhHhcceeccceEEEEEeeccchhccccCC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDV--RMTDT---RADEAERGITIKSTGISLYYEMTDDALKSYKGE 92 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~--~~~D~---~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~ 92 (752)
..++|+++|+.|+||||++-.|......-......++ -..|. ...||-+-..-.... .+........+....
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgv-pv~~~~~~~~l~~~L-- 249 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGI-PVKAIESFKDLKEEI-- 249 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCc-ceEeeCcHHHHHHHH--
Confidence 3578999999999999999998644321100001111 12232 123333222111111 111111101111000
Q ss_pred CCCCceEEEEEcCCCCccc----HHHHHHHHHhh--c-ceEEEEecchhHH---HHHHHhC-C-CHHHHHHHhhCC
Q 004467 93 RNGNEYLINLIDSPGHVDF----SSEVTAALRIT--D-GALVVVDCIEGVC---MYASKFG-V-DESKMMERLWGE 156 (752)
Q Consensus 93 ~~~~~~~inliDtPGh~df----~~e~~~~l~~~--D-~avlvvda~~Gv~---~~~~~~~-~-p~~~~inkldg~ 156 (752)
.+..++.+.||||||..-. ..++..-+..+ + -.+||+||+.|-. ....++. + +.-++++|+|+.
T Consensus 250 ~~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlDet 325 (388)
T PRK12723 250 TQSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDET 325 (388)
T ss_pred HHhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeccCC
Confidence 1124678999999995432 23444444433 3 5889999998865 3334443 2 234556899943
No 360
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.55 E-value=0.0049 Score=65.23 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHH
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVA 41 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~ 41 (752)
..+++++|.+++|||||+++|..
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~ 140 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAG 140 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999999963
No 361
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=0.009 Score=58.05 Aligned_cols=89 Identities=17% Similarity=0.132 Sum_probs=67.0
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~ 95 (752)
+.+.=.+.++|..+.|||+|+.+.+|..---+ .+-||-....+..+. .++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~------------------YqATIGiDFlskt~~------------l~d 68 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNT------------------YQATIGIDFLSKTMY------------LED 68 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhccc------------------ccceeeeEEEEEEEE------------EcC
Confidence 33445789999999999999999987653110 123555555444443 133
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchh
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~G 134 (752)
..+.+.|=||.|.+.|-.-+-+-.|.+++||+|.|-+.-
T Consensus 69 ~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~ 107 (221)
T KOG0094|consen 69 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDR 107 (221)
T ss_pred cEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEecccc
Confidence 478999999999999998888999999999999998753
No 362
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=96.49 E-value=0.004 Score=66.32 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHH
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~ 42 (752)
..+++++|.+++|||||+++|...
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~ 144 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGK 144 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999643
No 363
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.49 E-value=0.0036 Score=65.68 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVA 41 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~ 41 (752)
+..+++|+.|.|||||+++|+-
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCc
Confidence 4788999999999999999964
No 364
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.48 E-value=0.0025 Score=71.36 Aligned_cols=125 Identities=15% Similarity=0.189 Sum_probs=63.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCch-----hHhHh------cceeccceEEEEEeeccchhc
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRA-----DEAER------GITIKSTGISLYYEMTDDALK 87 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~-----~E~eR------giTi~s~~~~~~~~~~~~~~~ 87 (752)
-++++++|+.|+||||++-.|....-.... ..++.+.|..+ .|+-+ |+.+... +. ......
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~--g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~-----~~-~~~l~~ 292 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG--KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVV-----YD-PKELAK 292 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CCeEEEEECCccHHHHHHHHHHHHHHhCCceEcc-----CC-HHhHHH
Confidence 468999999999999999988543210110 11233333322 22221 2211110 00 000000
Q ss_pred cccCCCCCCceEEEEEcCCCCcccHHH----HHHHHH---hhcceEEEEecchhHH---HHHHHhC-CCH-HHHHHHhh
Q 004467 88 SYKGERNGNEYLINLIDSPGHVDFSSE----VTAALR---ITDGALVVVDCIEGVC---MYASKFG-VDE-SKMMERLW 154 (752)
Q Consensus 88 ~~~~~~~~~~~~inliDtPGh~df~~e----~~~~l~---~~D~avlvvda~~Gv~---~~~~~~~-~p~-~~~inkld 154 (752)
.+. +..++.+.||||||+..+... +..-+. ..+-..||+++..+.. ..+..+. ++. -++++|+|
T Consensus 293 ~l~---~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TKlD 368 (424)
T PRK05703 293 ALE---QLRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTKLD 368 (424)
T ss_pred HHH---HhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEeccc
Confidence 111 113578899999998665432 323333 1235689999988755 3333333 222 35568888
No 365
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.46 E-value=0.0019 Score=71.76 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=39.3
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC-------------ccccCCchhHhHhcceecc
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-------------VRMTDTRADEAERGITIKS 72 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~-------------~~~~D~~~~E~eRgiTi~s 72 (752)
+..+++|+|+|+.++|||||+++|....|...-...|+ ..+.|+.+...++..++..
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~~~~~~~~~~l~~~D~~~ia~~~~~~~~~ 285 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVFSHLGGDEMALQYSDYDKIALGHAQYIDF 285 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHHHhhcCCccCCChhhhHHHHhhhHHHHHH
Confidence 35689999999999999999999998877652111111 2345666666666665543
No 366
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.46 E-value=0.0043 Score=67.01 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=22.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGII 46 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i 46 (752)
..++++|-++.|||||+++|+....+.
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~~~ 159 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKVAK 159 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhccccee
Confidence 459999999999999999997665533
No 367
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=96.44 E-value=0.0038 Score=63.90 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=67.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
.-+++.|..+.|||+|++.++..--.- . .++. .-|-|. .+.+.. -+..
T Consensus 137 pe~~~~g~SNVGKSSLln~~~r~k~~~-~--t~k~----------K~g~Tq---~in~f~----------------v~~~ 184 (320)
T KOG2486|consen 137 PELAFYGRSNVGKSSLLNDLVRVKNIA-D--TSKS----------KNGKTQ---AINHFH----------------VGKS 184 (320)
T ss_pred ceeeeecCCcccHHHHHhhhhhhhhhh-h--hcCC----------CCccce---eeeeee----------------ccce
Confidence 468999999999999999986432211 1 1110 011121 122211 1457
Q ss_pred EEEEcCCCC----------cccHHHHHHHH---HhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 100 INLIDSPGH----------VDFSSEVTAAL---RITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh----------~df~~e~~~~l---~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
+.++|.||. .||..-+..-+ +..=-+.++|||+.+++ .++.+.++|..++.||||
T Consensus 185 ~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~D 259 (320)
T KOG2486|consen 185 WYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCD 259 (320)
T ss_pred EEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhh
Confidence 889999992 34444444433 23445678899999988 899999999999999999
No 368
>TIGR00257 IMPACT_YIGZ uncharacterized protein, YigZ family. This uncharacterized protein family includes YigZ, which has been crystallized, from E. coli. YigZ is homologous to the protein product of the mouse IMPACT gene. Crystallography shows a two-domain stucture, and the C-terminal domain is suggested to bind nucleic acids. The function is unknown. Note that the ortholog from E. coli was shown fused to the pepQ gene in GenBank entry X54687. This caused occasional misidentification of this protein as pepQ; this family is found in a number of species that lack pepQ.
Probab=96.41 E-value=0.022 Score=56.93 Aligned_cols=112 Identities=13% Similarity=0.106 Sum_probs=94.7
Q ss_pred CCCeeeeEEEEEeeeecccccccCCCchHHHHHHHHHHHHHhCCCeEEeeEEEEEEEecCcccccHHHHhhhhccccccc
Q 004467 588 EENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEE 667 (752)
Q Consensus 588 ~~pv~~v~v~l~d~~~~~d~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~ 667 (752)
+..+.||.+.++-.- .-...+.|=++.|=..|.++|+..|...-+.|...++|.++-+.+|.+...|.+..++|++.
T Consensus 89 ~~~l~nv~vVVtRYF---GGikLG~GGLvRAY~~aa~~al~~a~~~~~~~~~~~~~~~~y~~~~~v~~~l~~~~~~i~~~ 165 (204)
T TIGR00257 89 GSDLGDIGAVVVRYF---GGILLGTGGLIKAYGKSVLEALNNIQKEEKLELEILSLHCDYKQLDALERELKKFQLEIIKS 165 (204)
T ss_pred HCCCCcEEEEEEEec---CCcccCCchhHHHHHHHHHHHHHhCCeEEEEEEEEEEEEechhHHHHHHHHHHHCCCEEEee
Confidence 667888887776431 34456666567888999999999999999999999999999999999999999998998877
Q ss_pred cccCCCCcEEEEEEecchhhcCchHHhhhhCCCceeee
Q 004467 668 MQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQ 705 (752)
Q Consensus 668 ~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 705 (752)
+-. ..+.++..+|..+.-.+...|..+|+|+..+.
T Consensus 166 ~y~---~~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~~ 200 (204)
T TIGR00257 166 NFS---NNVVLVEISGTKENLAFSEQLTEISLGQLILK 200 (204)
T ss_pred Eec---CCEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 764 35899999999999999999999999987653
No 369
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.018 Score=54.89 Aligned_cols=118 Identities=15% Similarity=0.132 Sum_probs=70.1
Q ss_pred HHHHHHhhcccCCeeEEEEEeCCCCChHHHHHHHHH-HcCCCccccCCCccccCCchhHhHhcc--eeccceEEEEEeec
Q 004467 6 AEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVA-AAGIIAQEVAGDVRMTDTRADEAERGI--TIKSTGISLYYEMT 82 (752)
Q Consensus 6 ~~~~~~~~~~~~~iRni~iighvd~GKTTL~~~ll~-~~g~i~~~~~g~~~~~D~~~~E~eRgi--Ti~s~~~~~~~~~~ 82 (752)
+..+.++|. .+.-=+|.|+|.-+|||||+++++=. +++.. |. +| +. .| |+.....+...
T Consensus 5 ~~gl~~~~~-~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~-----~~---l~--~~----ki~~tvgLnig~i~v--- 66 (197)
T KOG0076|consen 5 MSGLYKYMF-KKEDYSVLILGLDNAGKTTFLEALKTDFSKAY-----GG---LN--PS----KITPTVGLNIGTIEV--- 66 (197)
T ss_pred HHHHHHHHh-hhhhhhheeeccccCCchhHHHHHHHHHHhhh-----cC---CC--HH----Heecccceeecceee---
Confidence 345566554 34456889999999999999999821 11111 10 00 00 01 22222222222
Q ss_pred cchhccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH------------HHHHHhCCCHHHHH
Q 004467 83 DDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC------------MYASKFGVDESKMM 150 (752)
Q Consensus 83 ~~~~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~------------~~~~~~~~p~~~~i 150 (752)
.+-.++|+|--|....-.-=..--..|.+.+.||||..-.. ..-.--|+|+++++
T Consensus 67 -------------~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~la 133 (197)
T KOG0076|consen 67 -------------CNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLA 133 (197)
T ss_pred -------------ccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhc
Confidence 25688999999975432222222258999999999998432 11223589999999
Q ss_pred HHhh
Q 004467 151 ERLW 154 (752)
Q Consensus 151 nkld 154 (752)
||-|
T Consensus 134 nkqd 137 (197)
T KOG0076|consen 134 NKQD 137 (197)
T ss_pred chhh
Confidence 9866
No 370
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.40 E-value=0.0051 Score=60.11 Aligned_cols=23 Identities=30% Similarity=0.247 Sum_probs=20.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHH
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVA 41 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~ 41 (752)
..+++++|..++|||||+++|+.
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~ 137 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRG 137 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999999964
No 371
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.33 E-value=0.0078 Score=59.14 Aligned_cols=56 Identities=14% Similarity=0.225 Sum_probs=41.1
Q ss_pred EEEEEcCCC------CcccHHHHHHHHHhhc---ceEEEEecch---------hHH---HHHHHhCCCHHHHHHHhh
Q 004467 99 LINLIDSPG------HVDFSSEVTAALRITD---GALVVVDCIE---------GVC---MYASKFGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPG------h~df~~e~~~~l~~~D---~avlvvda~~---------Gv~---~~~~~~~~p~~~~inkld 154 (752)
.+.++|||| |.+-..+.++.|.+-+ +++.++|+.= |.. ...-.+.+|.+-++.|||
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMD 175 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMD 175 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHH
Confidence 466899999 7777888999998755 5666666542 221 333457899999999999
No 372
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.32 E-value=0.0064 Score=66.07 Aligned_cols=134 Identities=20% Similarity=0.083 Sum_probs=65.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCC-Ccc--ccCCc---hhHhHhcceeccceEEEEEeeccchh-ccc
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG-DVR--MTDTR---ADEAERGITIKSTGISLYYEMTDDAL-KSY 89 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g-~~~--~~D~~---~~E~eRgiTi~s~~~~~~~~~~~~~~-~~~ 89 (752)
.+.++++++|+.|+||||++..|..... + .| ++. .+|.. ..||=+-..-.... .+.-......+ ..+
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~---~--~g~~V~lItaDtyR~gAveQLk~yae~lgv-pv~~~~dp~dL~~al 277 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLL---K--QNRTVGFITTDTFRSGAVEQFQGYADKLDV-ELIVATSPAELEEAV 277 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH---H--cCCeEEEEeCCccCccHHHHHHHHhhcCCC-CEEecCCHHHHHHHH
Confidence 3468999999999999999999965431 1 11 111 12221 12332221111111 11100111111 001
Q ss_pred cCCCCCCceEEEEEcCCCCcccHH----HHHHHHH--hhcceEEEEecchhHH---HHHHHhC-CCH-HHHHHHhhCC
Q 004467 90 KGERNGNEYLINLIDSPGHVDFSS----EVTAALR--ITDGALVVVDCIEGVC---MYASKFG-VDE-SKMMERLWGE 156 (752)
Q Consensus 90 ~~~~~~~~~~inliDtPGh~df~~----e~~~~l~--~~D~avlvvda~~Gv~---~~~~~~~-~p~-~~~inkldg~ 156 (752)
......+++.+.||||||+..... ++..-+. ..|..+||+++...-. ..++.+. ++. -++++|+|++
T Consensus 278 ~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~TKLDET 355 (407)
T PRK12726 278 QYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDET 355 (407)
T ss_pred HHHHhcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEEEcccCC
Confidence 111111357889999999854433 3333332 2366678888854433 3333332 222 3456999954
No 373
>PRK11568 hypothetical protein; Provisional
Probab=96.31 E-value=0.029 Score=56.04 Aligned_cols=112 Identities=17% Similarity=0.182 Sum_probs=94.8
Q ss_pred CCCeeeeEEEEEeeeecccccccCCCchHHHHHHHHHHHHHhCCCeEEeeEEEEEEEecCcccccHHHHhhhhccccccc
Q 004467 588 EENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEE 667 (752)
Q Consensus 588 ~~pv~~v~v~l~d~~~~~d~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~ 667 (752)
+..+.||.+.++-.- .-...+.|=++.|=..|.++|+..|...-..|...+.|+++-+.+|.+...|.+..+.|++.
T Consensus 89 ~~~l~nv~vVVtRYF---GGikLG~GGLvRAY~~aa~~al~~a~~~~~~~~~~~~i~~~y~~~~~v~~~l~~~~~~i~~~ 165 (204)
T PRK11568 89 GSGVGEITAVVVRYY---GGILLGTGGLVKAYGGGVQQALRQLTTQRKVPLTEYTLQCEYAQLAGIEALLGQFDGKIVNS 165 (204)
T ss_pred HCCCccEEEEEEEEc---CCcccccchhHHHHHHHHHHHHHhCCeEEEEEeEEEEEEECcchHHHHHHHHHHCCCEEEcc
Confidence 677888888776431 34456666667888999999999999999999999999999999999999999999998887
Q ss_pred cccCCCCcEEEEEEecchhhcCchHHhhhhCCCceeee
Q 004467 668 MQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQ 705 (752)
Q Consensus 668 ~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 705 (752)
+-. ..+.+...+|..+.-.+...|..+|+|+..+.
T Consensus 166 ~y~---~~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~~ 200 (204)
T PRK11568 166 EYQ---AFVTLRVALPAAKVAEFSAKLADFSRGSLQLL 200 (204)
T ss_pred eec---CCEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 764 35789999999999999999999999987654
No 374
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=0.0075 Score=56.98 Aligned_cols=103 Identities=17% Similarity=0.110 Sum_probs=63.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
++.-.+.++|--|||||||+..|= ... .|. . --|...+.-.+.- .
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLK-dDr------l~q-h-----------vPTlHPTSE~l~I----------------g 62 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLK-DDR------LGQ-H-----------VPTLHPTSEELSI----------------G 62 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHc-ccc------ccc-c-----------CCCcCCChHHhee----------------c
Confidence 455567799999999999998771 110 110 0 0111111111111 2
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH------------HHHHHhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC------------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~------------~~~~~~~~p~~~~inkld 154 (752)
+-.++-+|--||..=..--......+|+.|.+|||.+-.. ....-..+|..++.||+|
T Consensus 63 ~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId 132 (193)
T KOG0077|consen 63 GMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKID 132 (193)
T ss_pred CceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeeccccc
Confidence 5678899999995433333334568999999999987543 111225789999999988
No 375
>PTZ00099 rab6; Provisional
Probab=96.23 E-value=0.0019 Score=63.46 Aligned_cols=59 Identities=19% Similarity=0.147 Sum_probs=45.8
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHHH--hCCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYASK--FGVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~~--~~~p~~~~inkld 154 (752)
+...++|.||||+..|..-....++.+|++|+|+|++..-. ..... .++|.+++.||+|
T Consensus 27 ~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~D 96 (176)
T PTZ00099 27 GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTD 96 (176)
T ss_pred EEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcc
Confidence 46789999999999999888888999999999999988532 11122 2456667778888
No 376
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=96.22 E-value=0.003 Score=63.45 Aligned_cols=85 Identities=26% Similarity=0.321 Sum_probs=56.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
-.|+++|-+..|||||+..|.... + ..++..|+ .+.-+.+-.++++-.
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~---S-------------------------eaA~yeFT----TLtcIpGvi~y~ga~ 110 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTH---S-------------------------EAASYEFT----TLTCIPGVIHYNGAN 110 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcch---h-------------------------hhhceeee----EEEeecceEEecCce
Confidence 468999999999999998883211 1 11111111 000111112234779
Q ss_pred EEEEcCCCCccc-------HHHHHHHHHhhcceEEEEecchhHH
Q 004467 100 INLIDSPGHVDF-------SSEVTAALRITDGALVVVDCIEGVC 136 (752)
Q Consensus 100 inliDtPGh~df-------~~e~~~~l~~~D~avlvvda~~Gv~ 136 (752)
|.++|-||...- ..+|++.++-+|..+.|+||+.+..
T Consensus 111 IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e~ 154 (364)
T KOG1486|consen 111 IQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSED 154 (364)
T ss_pred EEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcchh
Confidence 999999996543 3568889999999999999998754
No 377
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.18 E-value=0.0061 Score=67.70 Aligned_cols=61 Identities=10% Similarity=0.081 Sum_probs=37.2
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHh------hcceEEEEecchhHH---HHHHHhC-CCH-HHHHHHhhCCC
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRI------TDGALVVVDCIEGVC---MYASKFG-VDE-SKMMERLWGEN 157 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~------~D~avlvvda~~Gv~---~~~~~~~-~p~-~~~inkldg~~ 157 (752)
++.+.||||+|......+...-+.. .+-.+||+||+.+-. ..+..|. ++. -++++|+|...
T Consensus 269 ~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~~~~I~TKlDEt~ 340 (420)
T PRK14721 269 GKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGIHGCIITKVDEAA 340 (420)
T ss_pred CCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeeeCCC
Confidence 5678999999966544443333332 235689999997655 3344432 332 33559999543
No 378
>PRK00098 GTPase RsgA; Reviewed
Probab=96.16 E-value=0.0059 Score=65.37 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVA 41 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~ 41 (752)
+.++++|+.|+|||||+++|+.
T Consensus 165 k~~~~~G~sgvGKStlin~l~~ 186 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAP 186 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999963
No 379
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.14 E-value=0.0056 Score=60.18 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=41.9
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
..|.+.+||||+.. ...+..++..+|.+++++.....-. .++++.++|..+++||.+
T Consensus 91 ~~~d~viiDtpp~~--~~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~ 154 (179)
T cd03110 91 EGAELIIIDGPPGI--GCPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYD 154 (179)
T ss_pred cCCCEEEEECcCCC--cHHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 47899999999754 3467788899999999998875321 455566777666667654
No 380
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=96.14 E-value=0.0028 Score=63.38 Aligned_cols=105 Identities=19% Similarity=0.217 Sum_probs=70.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
-..|+++|..+.|||+|+-+++...= .+ .+.-+.++--.+-+++ ++..+
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f------~~--~y~ptied~y~k~~~v-----------------------~~~~~ 51 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRF------VE--DYDPTIEDSYRKELTV-----------------------DGEVC 51 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccc------cc--ccCCCccccceEEEEE-----------------------CCEEE
Confidence 46799999999999999988853221 00 0111111101111111 23467
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHH---HhCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYAS---KFGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~---~~~~p~~~~inkld 154 (752)
.+.++||+|..+|...-...++.+|+-++|.+.++--. ...+ .-.+|.+++.||.|
T Consensus 52 ~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~D 119 (196)
T KOG0395|consen 52 MLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCD 119 (196)
T ss_pred EEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEccc
Confidence 88899999999999999999999999999999886433 2212 13478888889988
No 381
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.06 E-value=0.0045 Score=73.14 Aligned_cols=130 Identities=16% Similarity=0.112 Sum_probs=65.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCC--Ccc--ccCCc---hhHhHhcceeccceEEEEEeeccchhc-ccc
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG--DVR--MTDTR---ADEAERGITIKSTGISLYYEMTDDALK-SYK 90 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g--~~~--~~D~~---~~E~eRgiTi~s~~~~~~~~~~~~~~~-~~~ 90 (752)
-+.|+++|+.|+||||++..|....-.. .| ++. ..|.. ..|+-+-..-.... .+....+...+. .+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~----~G~kkV~lit~Dt~RigA~eQL~~~a~~~gv-pv~~~~~~~~l~~al~ 259 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAR----EGADQLALLTTDSFRIGALEQLRIYGRILGV-PVHAVKDAADLRFALA 259 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHH----cCCCeEEEecCcccchHHHHHHHHHHHhCCC-CccccCCHHHHHHHHH
Confidence 4689999999999999999996432100 11 111 12321 12322211111110 000000111111 111
Q ss_pred CCCCCCceEEEEEcCCCCcccHHHHHHHHHh------hcceEEEEecchhHH---HHHHHhC----CC-HHHHHHHhhCC
Q 004467 91 GERNGNEYLINLIDSPGHVDFSSEVTAALRI------TDGALVVVDCIEGVC---MYASKFG----VD-ESKMMERLWGE 156 (752)
Q Consensus 91 ~~~~~~~~~inliDtPGh~df~~e~~~~l~~------~D~avlvvda~~Gv~---~~~~~~~----~p-~~~~inkldg~ 156 (752)
+.+++.+.||||||..-...++...+.. .+-.+||+||+.+.. ..++.|+ ++ .-++++|+|+.
T Consensus 260 ---~~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 260 ---ALGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred ---HhcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccCCC
Confidence 1235678999999944333444443332 356899999997654 3445553 12 23456999944
No 382
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.00 E-value=0.024 Score=52.63 Aligned_cols=85 Identities=22% Similarity=0.278 Sum_probs=59.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
-.+.++|+.|+|||.|+.+++...= -+. .. ..-|+..-|..++.. ++..+
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kf-kDd--ss-----------HTiGveFgSrIinVG----------------gK~vK 59 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKF-KDD--SS-----------HTIGVEFGSRIVNVG----------------GKTVK 59 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhh-ccc--cc-----------ceeeeeecceeeeec----------------CcEEE
Confidence 4577999999999999999974421 000 00 001233333333322 24678
Q ss_pred EEEEcCCCCcccHHHHHHHHHhhcceEEEEecchh
Q 004467 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~D~avlvvda~~G 134 (752)
+.+-||.|...|-.-+.+--+.+-+|+||-|++.-
T Consensus 60 LQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Tsr 94 (214)
T KOG0086|consen 60 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSR 94 (214)
T ss_pred EEEeecccHHHHHHHHHHHhccccceEEEEeccch
Confidence 89999999999988888888999999999999864
No 383
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=0.014 Score=56.78 Aligned_cols=87 Identities=18% Similarity=0.208 Sum_probs=63.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
--|+++|..+.|||||+-|... |-.++ + +--||-.+..+-.+.. .....+
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk--~~F~e----------~------~e~TIGaaF~tktv~~------------~~~~ik 55 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVK--DQFHE----------N------IEPTIGAAFLTKTVTV------------DDNTIK 55 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhh--Ccccc----------c------cccccccEEEEEEEEe------------CCcEEE
Confidence 4688999999999999988842 11111 1 1237777776666652 223578
Q ss_pred EEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH
Q 004467 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~ 136 (752)
+-+=||.|...|.+-.---.|.|++||||-|.+.--.
T Consensus 56 feIWDTAGQERy~slapMYyRgA~AAivvYDit~~~S 92 (200)
T KOG0092|consen 56 FEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEES 92 (200)
T ss_pred EEEEEcCCcccccccccceecCCcEEEEEEecccHHH
Confidence 8899999999987665556689999999999996543
No 384
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=95.95 E-value=0.0021 Score=59.28 Aligned_cols=100 Identities=18% Similarity=0.171 Sum_probs=67.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
-+.++|--+||||||++.+. +|-..+. ++ +.+|.-+ -.++ ..+..|
T Consensus 22 el~lvGLq~sGKtt~Vn~ia--~g~~~ed-mi-----------ptvGfnm------rk~t--------------kgnvti 67 (186)
T KOG0075|consen 22 ELSLVGLQNSGKTTLVNVIA--RGQYLED-MI-----------PTVGFNM------RKVT--------------KGNVTI 67 (186)
T ss_pred eEEEEeeccCCcceEEEEEe--eccchhh-hc-----------cccccee------EEec--------------cCceEE
Confidence 47899999999999998762 2211110 11 1122221 1111 135688
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHH---HhCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYAS---KFGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~---~~~~p~~~~inkld 154 (752)
-+-|-||...|-.-=.+--|.+|+.|.+|||.+.-. .++. -.|+|..++-||.|
T Consensus 68 klwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d 133 (186)
T KOG0075|consen 68 KLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKID 133 (186)
T ss_pred EEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEeccccc
Confidence 899999999999888999999999999999998322 1221 24788888888877
No 385
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.015 Score=66.34 Aligned_cols=137 Identities=16% Similarity=0.133 Sum_probs=75.7
Q ss_pred HHHHhhccc-CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccc------------cCCC--ccccCCchhHhHhcc----
Q 004467 8 GLRRIMDFK-HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE------------VAGD--VRMTDTRADEAERGI---- 68 (752)
Q Consensus 8 ~~~~~~~~~-~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~------------~~g~--~~~~D~~~~E~eRgi---- 68 (752)
.+..+++.. ...-.|+|.|.+.+||||++++||...-.-... ..|. +..+|-.+ |+---.
T Consensus 97 ~l~~i~~~l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~-ek~d~~ti~~ 175 (749)
T KOG0448|consen 97 KLDAIDEVLARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSE-EKIDMKTINQ 175 (749)
T ss_pred HHHHHHHHHhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCc-ccccHHHHhH
Confidence 344444432 344579999999999999999999875322210 0111 11222110 110001
Q ss_pred ----------eeccceEEEEEeeccchhccccCCCCCCceEEEEEcCCCC---cccHHHHHHHHHhhcceEEEEecchhH
Q 004467 69 ----------TIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGH---VDFSSEVTAALRITDGALVVVDCIEGV 135 (752)
Q Consensus 69 ----------Ti~s~~~~~~~~~~~~~~~~~~~~~~~~~~~inliDtPGh---~df~~e~~~~l~~~D~avlvvda~~Gv 135 (752)
+-..+...+.|+...-.+. ..-+.+||.||- ..+...+-.-.-.+|..|+|+.|..-.
T Consensus 176 ~~haL~~~~~~~~~sLlrV~~p~~~csLL---------rnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntl 246 (749)
T KOG0448|consen 176 LAHALKPDKDLGAGSLLRVFWPDDKCSLL---------RNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTL 246 (749)
T ss_pred HHHhcCcccccCcceEEEEEecCccchhh---------hccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHh
Confidence 2223445555653211110 126889999994 345556666667899999999998876
Q ss_pred H----HHHH--HhCCCHH-HHHHHhh
Q 004467 136 C----MYAS--KFGVDES-KMMERLW 154 (752)
Q Consensus 136 ~----~~~~--~~~~p~~-~~inkld 154 (752)
. .+.. .-+.|.+ ++.||+|
T Consensus 247 t~sek~Ff~~vs~~KpniFIlnnkwD 272 (749)
T KOG0448|consen 247 TLSEKQFFHKVSEEKPNIFILNNKWD 272 (749)
T ss_pred HHHHHHHHHHhhccCCcEEEEechhh
Confidence 6 1111 1235654 4457777
No 386
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=95.92 E-value=0.02 Score=62.38 Aligned_cols=99 Identities=21% Similarity=0.198 Sum_probs=57.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC-CCccccCCCccccCCchhHhHhcceeccceEEEEEeecc-chhccccCCCCCCc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAG-IIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD-DALKSYKGERNGNE 97 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g-~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~-~~~~~~~~~~~~~~ 97 (752)
..+||+|-+++|||||.++|..... .+ +. + -+ .|+......+.+.+.. ..+.......+...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~-----a~--y-pf--------tTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~ 66 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEA-----AN--P-PF--------TTIEPNAGVVNPSDPRLDLLAIYIKPEKVPP 66 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCcccc-----CC--C-CC--------CCCCCceeEEEechhHHHHHHHHhCCcCcCC
Confidence 5689999999999999999943322 11 10 0 00 1222222222222100 00000011112234
Q ss_pred eEEEEEcCCCCcc-------cHHHHHHHHHhhcceEEEEecchh
Q 004467 98 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG 134 (752)
Q Consensus 98 ~~inliDtPGh~d-------f~~e~~~~l~~~D~avlvvda~~G 134 (752)
..+.++|.||-.. +.....+-++.+|+.+.|||+-+.
T Consensus 67 a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~d 110 (368)
T TIGR00092 67 TTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFED 110 (368)
T ss_pred ceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCCC
Confidence 5789999999543 666788899999999999999754
No 387
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.91 E-value=0.011 Score=59.46 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHH
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~ 42 (752)
+|+++|..|+|||||+.+|+..
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999865
No 388
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.91 E-value=0.0018 Score=65.84 Aligned_cols=58 Identities=21% Similarity=0.289 Sum_probs=38.1
Q ss_pred ceEEEEEcCCCCcc-cH----HHHHH-HHH--hhcceEEEEecchhHH------------HHHHHhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVD-FS----SEVTA-ALR--ITDGALVVVDCIEGVC------------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~d-f~----~e~~~-~l~--~~D~avlvvda~~Gv~------------~~~~~~~~p~~~~inkld 154 (752)
.+...||||||... |. +.++. +|. ---.++.|||....-. .++-+..+|.+++.||.|
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~D 192 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTD 192 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEeccc
Confidence 46788999999764 32 22222 332 2235667788765433 445577899999999998
No 389
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=95.87 E-value=0.062 Score=49.45 Aligned_cols=105 Identities=15% Similarity=0.182 Sum_probs=66.0
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~ 95 (752)
+.+-..|..+|--++||||++..| .++ |-...-+..|..+ .++.+.
T Consensus 14 t~rEirilllGldnAGKTT~LKqL-----------~sE----D~~hltpT~GFn~----k~v~~~--------------- 59 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQL-----------KSE----DPRHLTPTNGFNT----KKVEYD--------------- 59 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHH-----------ccC----ChhhccccCCcce----EEEeec---------------
Confidence 344445888999999999999999 221 1111111223332 233443
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHH---HhCCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYAS---KFGVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~---~~~~p~~~~inkld 154 (752)
..+++|+-|.-|....-+--..-....|+.|.|||+.+.-. .+++ -..+|+.++.||-|
T Consensus 60 g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQd 130 (185)
T KOG0074|consen 60 GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQD 130 (185)
T ss_pred CcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhH
Confidence 35899999999976654444445567899999999886532 2222 23477777777644
No 390
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=95.84 E-value=0.021 Score=50.58 Aligned_cols=71 Identities=27% Similarity=0.254 Sum_probs=48.3
Q ss_pred EEEEe-CCCCChHHHHHHHHHHcCCCccccCC-CccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 22 MSVIA-HVDHGKSTLTDSLVAAAGIIAQEVAG-DVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 22 i~iig-hvd~GKTTL~~~ll~~~g~i~~~~~g-~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
|++.| ..|.||||++-.|...... .| ++.+.|..+ .|.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-----~~~~vl~~d~d~-----------------------------------~~d 41 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-----RGKRVLLIDLDP-----------------------------------QYD 41 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-----CCCcEEEEeCCC-----------------------------------CCC
Confidence 45555 6799999999988654421 12 222333222 246
Q ss_pred EEEEcCCCCcccHHHHHHHHHhhcceEEEEecchh
Q 004467 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~D~avlvvda~~G 134 (752)
+.+||||+..+ .....++..+|..++++++...
T Consensus 42 ~viiD~p~~~~--~~~~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 42 YIIIDTPPSLG--LLTRNALAAADLVLIPVQPSPL 74 (104)
T ss_pred EEEEeCcCCCC--HHHHHHHHHCCEEEEeccCCHH
Confidence 78999999654 3455899999999999998754
No 391
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=95.74 E-value=0.012 Score=62.13 Aligned_cols=100 Identities=20% Similarity=0.231 Sum_probs=61.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceec--cceEEEEEeeccchhccccCCCCC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIK--STGISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~--s~~~~~~~~~~~~~~~~~~~~~~~ 95 (752)
-+-.|+++|-+++|||||+.++-...-. .+.-.+| |+. ..++.. .
T Consensus 158 llADVGLVG~PNaGKSTlls~vS~AkPK-----IadYpFT-----------TL~PnLGvV~~--~--------------- 204 (369)
T COG0536 158 LLADVGLVGLPNAGKSTLLSAVSAAKPK-----IADYPFT-----------TLVPNLGVVRV--D--------------- 204 (369)
T ss_pred eecccccccCCCCcHHHHHHHHhhcCCc-----ccCCccc-----------cccCcccEEEe--c---------------
Confidence 3567899999999999999998432211 2211111 222 222222 1
Q ss_pred CceEEEEEcCCCCc-----------ccHHHHHHHHHhhcceEEEEecchh-----HH----------HHHHH-hCCCHHH
Q 004467 96 NEYLINLIDSPGHV-----------DFSSEVTAALRITDGALVVVDCIEG-----VC----------MYASK-FGVDESK 148 (752)
Q Consensus 96 ~~~~inliDtPGh~-----------df~~e~~~~l~~~D~avlvvda~~G-----v~----------~~~~~-~~~p~~~ 148 (752)
....+.+-|-||.. +|.+.++| |-..+.|||...- .+ .|... .+.|.++
T Consensus 205 ~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER----t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~iv 280 (369)
T COG0536 205 GGESFVVADIPGLIEGASEGVGLGLRFLRHIER----TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIV 280 (369)
T ss_pred CCCcEEEecCcccccccccCCCccHHHHHHHHh----hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEE
Confidence 25679999999943 46555555 5677888888742 22 33222 3577888
Q ss_pred HHHHhh
Q 004467 149 MMERLW 154 (752)
Q Consensus 149 ~inkld 154 (752)
+.||+|
T Consensus 281 v~NKiD 286 (369)
T COG0536 281 VLNKID 286 (369)
T ss_pred EEeccC
Confidence 889888
No 392
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=95.68 E-value=0.061 Score=46.94 Aligned_cols=68 Identities=19% Similarity=0.150 Sum_probs=51.2
Q ss_pred EEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEecc
Q 004467 287 LYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGL 366 (752)
Q Consensus 287 ~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~Gl 366 (752)
++|.....+.+.|. ++.+-|.+|+|+.||.+.... .+ -||..|+-..| .++++|.||+.+-|.|+
T Consensus 3 g~VlE~~~~~g~G~-vatviV~~GtL~~Gd~iv~G~-~~----------gkVr~l~d~~g---~~v~~a~Ps~~V~I~G~ 67 (95)
T cd03702 3 GVVIESKLDKGRGP-VATVLVQNGTLKVGDVLVAGT-TY----------GKVRAMFDENG---KRVKEAGPSTPVEILGL 67 (95)
T ss_pred EEEEEEEecCCCCc-cEEEEEEcCeEeCCCEEEEcc-cc----------cEEEEEECCCC---CCCCEECCCCcEEEcCC
Confidence 45555555667776 889999999999999997532 10 26666665554 66999999999999998
Q ss_pred ccc
Q 004467 367 DQF 369 (752)
Q Consensus 367 ~~~ 369 (752)
++.
T Consensus 68 ~~~ 70 (95)
T cd03702 68 KGV 70 (95)
T ss_pred CCC
Confidence 765
No 393
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.66 E-value=0.012 Score=64.40 Aligned_cols=136 Identities=18% Similarity=0.181 Sum_probs=76.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCC---chhHhHhcceeccceEEEEEee-ccc--hhccccCC
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDT---RADEAERGITIKSTGISLYYEM-TDD--ALKSYKGE 92 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~---~~~E~eRgiTi~s~~~~~~~~~-~~~--~~~~~~~~ 92 (752)
.-.|-++|--||||||.+..|-.+-.. .....+ .-..|. -..||-+...-+..+-.|.-.. .++ .+++=-..
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvl-lVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVL-LVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHH-cCCceE-EEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 456889999999999999999554322 111111 112232 2356666655555443332211 111 11110111
Q ss_pred CCCCceEEEEEcCCCC--c--ccHHHHH--HHHHhhcceEEEEecchhHH--HHHHHhC--CCH-HHHHHHhhCC
Q 004467 93 RNGNEYLINLIDSPGH--V--DFSSEVT--AALRITDGALVVVDCIEGVC--MYASKFG--VDE-SKMMERLWGE 156 (752)
Q Consensus 93 ~~~~~~~inliDtPGh--~--df~~e~~--~~l~~~D~avlvvda~~Gv~--~~~~~~~--~p~-~~~inkldg~ 156 (752)
.+...|.+.||||.|- . ++..|+. ...-..|-.++||||.-|=. ..|+.|+ ++. -++++|+||+
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIlTKlDGd 252 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGITGVILTKLDGD 252 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCceEEEEcccCC
Confidence 2234578999999993 2 3444433 33346799999999999955 5555554 343 4556999953
No 394
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.62 E-value=0.029 Score=58.91 Aligned_cols=132 Identities=14% Similarity=0.090 Sum_probs=64.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCc---hhHhHhcc--eeccceEEEEEeeccchhcc-ccCC
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTR---ADEAERGI--TIKSTGISLYYEMTDDALKS-YKGE 92 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~---~~E~eRgi--Ti~s~~~~~~~~~~~~~~~~-~~~~ 92 (752)
...++++|..|+||||++..|...... .....|- -.+|.. ..+|-+.. .+. +.+........+.. +...
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~-~~~~v~~-i~~D~~ri~~~~ql~~~~~~~~---~~~~~~~~~~~l~~~l~~l 149 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHG-KKKTVGF-ITTDHSRIGTVQQLQDYVKTIG---FEVIAVRDEAAMTRALTYF 149 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEE-EecCCCCHHHHHHHHHHhhhcC---ceEEecCCHHHHHHHHHHH
Confidence 368999999999999999988654310 0000111 122322 11111110 111 11111011111111 1111
Q ss_pred CCCCceEEEEEcCCCCcccHHHHHHHH----H--hhcceEEEEecchhHH---HHHHHhC-CCH-HHHHHHhhC
Q 004467 93 RNGNEYLINLIDSPGHVDFSSEVTAAL----R--ITDGALVVVDCIEGVC---MYASKFG-VDE-SKMMERLWG 155 (752)
Q Consensus 93 ~~~~~~~inliDtPGh~df~~e~~~~l----~--~~D~avlvvda~~Gv~---~~~~~~~-~p~-~~~inkldg 155 (752)
.+..++.+.||||||......+....+ + ..|-.+||+||+.+-. .+++.|+ ++. -++++|+|+
T Consensus 150 ~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~TKlDe 223 (270)
T PRK06731 150 KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDE 223 (270)
T ss_pred HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEEEeecC
Confidence 122357889999999765444433322 2 3466799999985443 4555543 221 234578883
No 395
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=95.62 E-value=0.025 Score=52.71 Aligned_cols=109 Identities=16% Similarity=0.149 Sum_probs=70.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccc-eEEEEEeeccchhccccCCCCCCc
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~-~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
.-.|.++|.-..|||.+++.|+|-...+...... ||.-. ..++... .+..
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~p----------------TiEDiY~~svet~-------------rgar 59 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHP----------------TIEDIYVASVETD-------------RGAR 59 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCcccc----------------chhhheeEeeecC-------------CChh
Confidence 4468899999999999999999988765442111 22111 1112211 1224
Q ss_pred eEEEEEcCCCCcccHHHHHH-HHHhhcceEEEEecchhHH--------HHHHH----hCCCHHHHHHHhhCC
Q 004467 98 YLINLIDSPGHVDFSSEVTA-ALRITDGALVVVDCIEGVC--------MYASK----FGVDESKMMERLWGE 156 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~-~l~~~D~avlvvda~~Gv~--------~~~~~----~~~p~~~~inkldg~ 156 (752)
-.+.|-||.|-.+.-.|.-+ .++.+|+-|||-|..+-.. ....+ -.+|++++.||.|.+
T Consensus 60 E~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~ 131 (198)
T KOG3883|consen 60 EQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA 131 (198)
T ss_pred heEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc
Confidence 57889999999888556544 5678999999998876433 22222 346777777877743
No 396
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=95.59 E-value=0.034 Score=51.49 Aligned_cols=61 Identities=21% Similarity=0.320 Sum_probs=46.4
Q ss_pred CCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHHHh-----CCCHHHHHHHhh
Q 004467 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYASKF-----GVDESKMMERLW 154 (752)
Q Consensus 94 ~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~~~-----~~p~~~~inkld 154 (752)
++....+.+-||.|.+.|..-+..--+...++++|-|.+.|.. +++++. .+|.+.+-||.|
T Consensus 53 ~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d 123 (198)
T KOG0079|consen 53 NGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKND 123 (198)
T ss_pred CCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCC
Confidence 3557789999999999998666666788999999999998866 555543 245556667665
No 397
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.56 E-value=0.028 Score=63.50 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHH
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~ 42 (752)
-+.++++|..|+||||++..|...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 468999999999999999999643
No 398
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=95.40 E-value=0.037 Score=53.40 Aligned_cols=87 Identities=17% Similarity=0.205 Sum_probs=60.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.....|.|+|..|+|||+|.+++.+.. -.++...||..-..+=... .+++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~k------------------F~~qykaTIgadFltKev~------------Vd~~ 56 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKK------------------FSQQYKATIGADFLTKEVQ------------VDDR 56 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHH------------------HHHHhccccchhheeeEEE------------EcCe
Confidence 346789999999999999999996431 1233344554444333332 1234
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecch
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~ 133 (752)
...+.+=||.|.+.|-.--..--|.+|.++||-|...
T Consensus 57 ~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~ 93 (210)
T KOG0394|consen 57 SVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNN 93 (210)
T ss_pred EEEEEEEecccHHHhhhcccceecCCceEEEEeecCC
Confidence 5677889999999997655555689999999977654
No 399
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.24 E-value=0.023 Score=56.07 Aligned_cols=106 Identities=16% Similarity=0.132 Sum_probs=70.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
.--|.++|..+.|||-|+.++....=. +|+ .-||-....+... ..+++..
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnEF~-----------~~S-------ksTIGvef~t~t~------------~vd~k~v 63 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNEFS-----------LES-------KSTIGVEFATRTV------------NVDGKTV 63 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcccccC-----------ccc-------ccceeEEEEeece------------eecCcEE
Confidence 345899999999999999998422111 111 1233222111111 1234567
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHHHh------CCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYASKF------GVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~~~------~~p~~~~inkld 154 (752)
+..|=||.|...|-.=+.+--+.+-||+||-|.+.-.. +|++++ +++++++-||.|
T Consensus 64 kaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~D 130 (222)
T KOG0087|consen 64 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSD 130 (222)
T ss_pred EEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchh
Confidence 88899999999997555555689999999999987655 555543 566677779988
No 400
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.07 E-value=0.039 Score=58.13 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=24.2
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
...+..|+|+|.+|||||||+++|+..
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999999865
No 401
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=95.01 E-value=0.053 Score=56.77 Aligned_cols=91 Identities=24% Similarity=0.244 Sum_probs=54.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccc-cCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE-VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~-~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
..-|+-|+|-++.|||||++++.-......+. ..|- +-|+|+..+..--...
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~-----------~pGVT~~V~~~iri~~---------------- 194 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGA-----------EPGVTRRVSERIRISH---------------- 194 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccC-----------CCCceeeehhheEecc----------------
Confidence 34589999999999999999995433322210 1231 2378887766322221
Q ss_pred ceEEEEEcCCC-CcccHHHHHHHHHhhcceEEEEecchhHH
Q 004467 97 EYLINLIDSPG-HVDFSSEVTAALRITDGALVVVDCIEGVC 136 (752)
Q Consensus 97 ~~~inliDtPG-h~df~~e~~~~l~~~D~avlvvda~~Gv~ 136 (752)
...+.+||||| -.+=+..++.+|+.|= +.+|-|..-|..
T Consensus 195 rp~vy~iDTPGil~P~I~~~e~~lKLAL-~g~Vkd~~V~~~ 234 (335)
T KOG2485|consen 195 RPPVYLIDTPGILVPSIVDVEDGLKLAL-CGLVKDHLVGEE 234 (335)
T ss_pred CCceEEecCCCcCCCCCCCHHHhhhhhh-cccccccccCHH
Confidence 45689999999 2333445566665442 224456665654
No 402
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.95 E-value=0.023 Score=52.54 Aligned_cols=104 Identities=14% Similarity=0.141 Sum_probs=65.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
.+-|+|...+|||+++-+-+..+=.+ ..+. .-||-.+... .|+ ..+...+
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~-------afvs-------TvGidFKvKT---vyr-------------~~kRikl 72 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFTS-------AFVS-------TVGIDFKVKT---VYR-------------SDKRIKL 72 (193)
T ss_pred eEEEEccCCccchhhhHHhhcccccc-------ceee-------eeeeeEEEeE---eee-------------cccEEEE
Confidence 57799999999999987763211000 0000 0122222221 122 1134678
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHH------HHhCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYA------SKFGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~------~~~~~p~~~~inkld 154 (752)
.+-||.|.+.+..-+..-.|.+++-||+.|.+.... .|+ ...+.|++++.||+|
T Consensus 73 QiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCD 137 (193)
T KOG0093|consen 73 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCD 137 (193)
T ss_pred EEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccC
Confidence 899999999876666666799999999999986533 222 224678888888887
No 403
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=94.86 E-value=0.037 Score=55.45 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=43.2
Q ss_pred ceEEEEEcCCCCccc------HHHHHHHHHhhcceEEEEecchhHH---------------HHHHHhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDF------SSEVTAALRITDGALVVVDCIEGVC---------------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df------~~e~~~~l~~~D~avlvvda~~Gv~---------------~~~~~~~~p~~~~inkld 154 (752)
...+.++||||.+.| ...+.+-|...|.-+++|.-++-.. .-+-.+..|.+-++.|+|
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~D 174 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKAD 174 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhH
Confidence 456779999996654 4568888888998888877666544 223346789999999998
No 404
>PRK01889 GTPase RsgA; Reviewed
Probab=94.86 E-value=0.025 Score=62.03 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=22.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
.-..++++|+.|+|||||++.|+....
T Consensus 194 ~g~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 194 GGKTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred cCCEEEEECCCCccHHHHHHHHHHhcc
Confidence 346799999999999999999975443
No 405
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.61 E-value=0.036 Score=44.17 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=19.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHH
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~ 42 (752)
+..|.|+.++|||||+|++.+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999543
No 406
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=94.58 E-value=0.2 Score=43.81 Aligned_cols=68 Identities=16% Similarity=0.121 Sum_probs=49.9
Q ss_pred EEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEecc
Q 004467 287 LYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGL 366 (752)
Q Consensus 287 ~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~Gl 366 (752)
+.|.-...+.+.|. ++.+=|++|+|+.||.+.... . . -||..++-. .-..+.+|.||+.+.+.|+
T Consensus 3 g~ViE~~~~~g~G~-vatviV~~GtL~~Gd~iv~G~-~-----~-----GkVr~~~d~---~g~~v~~a~Ps~~v~i~g~ 67 (95)
T cd03701 3 GTVIESKLDKGRGP-VATVIVQNGTLKKGDVIVAGG-T-----Y-----GKIRTMVDE---NGKALLEAGPSTPVEILGL 67 (95)
T ss_pred EEEEEEEecCCCCe-eEEEEEEcCeEecCCEEEECC-c-----c-----ceEEEEECC---CCCCccccCCCCCEEEeee
Confidence 44555555667776 899999999999999997532 1 0 256555544 3456999999999999998
Q ss_pred ccc
Q 004467 367 DQF 369 (752)
Q Consensus 367 ~~~ 369 (752)
++.
T Consensus 68 ~~~ 70 (95)
T cd03701 68 KDV 70 (95)
T ss_pred cCC
Confidence 775
No 407
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.44 E-value=0.024 Score=60.61 Aligned_cols=128 Identities=16% Similarity=0.199 Sum_probs=71.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcC---CCccccCCCc---cccCCchh-HhHhcceeccceEEEEEeeccc------h
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAG---IIAQEVAGDV---RMTDTRAD-EAERGITIKSTGISLYYEMTDD------A 85 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g---~i~~~~~g~~---~~~D~~~~-E~eRgiTi~s~~~~~~~~~~~~------~ 85 (752)
.-.|.++|--|+||||.+-.|.++-. .-.--..+++ -..|.+.+ --.-+|.+.. .|...++ .
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~yg-----syte~dpv~ia~eg 175 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYG-----SYTEADPVKIASEG 175 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEe-----cccccchHHHHHHH
Confidence 44678999999999999999976532 1110001111 13343333 1111222211 1221111 1
Q ss_pred hccccCCCCCCceEEEEEcCCCC----cccHHHHHHHHH--hhcceEEEEecchhHH--HHHHHhCCCH---HHHHHHhh
Q 004467 86 LKSYKGERNGNEYLINLIDSPGH----VDFSSEVTAALR--ITDGALVVVDCIEGVC--MYASKFGVDE---SKMMERLW 154 (752)
Q Consensus 86 ~~~~~~~~~~~~~~inliDtPGh----~df~~e~~~~l~--~~D~avlvvda~~Gv~--~~~~~~~~p~---~~~inkld 154 (752)
++. .+..++.+.|+||-|. ..+..|+..-.. ..|-.|+|+||.-|-. .+++.|+-.+ -++++|||
T Consensus 176 v~~----fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdvg~vIlTKlD 251 (483)
T KOG0780|consen 176 VDR----FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDVGAVILTKLD 251 (483)
T ss_pred HHH----HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhccceEEEEecc
Confidence 111 2234689999999992 234445444433 3699999999999966 5566665332 34569999
Q ss_pred C
Q 004467 155 G 155 (752)
Q Consensus 155 g 155 (752)
|
T Consensus 252 G 252 (483)
T KOG0780|consen 252 G 252 (483)
T ss_pred c
Confidence 4
No 408
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=94.30 E-value=0.13 Score=54.04 Aligned_cols=96 Identities=25% Similarity=0.312 Sum_probs=58.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
...|+++|=.+||||||+.+|. .+....+... -..+|- |..++. .. ++.
T Consensus 178 ~pviavVGYTNaGKsTLikaLT-~Aal~p~drL--FATLDp---------T~h~a~----Lp---------------sg~ 226 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALT-KAALYPNDRL--FATLDP---------TLHSAH----LP---------------SGN 226 (410)
T ss_pred CceEEEEeecCccHHHHHHHHH-hhhcCccchh--heeccc---------hhhhcc----CC---------------CCc
Confidence 4589999999999999999996 3333332100 112332 222221 11 256
Q ss_pred EEEEEcCCCCc-ccHHHHHHH-------HHhhcceEEEEecchhHH--------HHHHHhCCC
Q 004467 99 LINLIDSPGHV-DFSSEVTAA-------LRITDGALVVVDCIEGVC--------MYASKFGVD 145 (752)
Q Consensus 99 ~inliDtPGh~-df~~e~~~~-------l~~~D~avlvvda~~Gv~--------~~~~~~~~p 145 (752)
.+.|.||-|+. |+=...+.| ..-+|..|=|+|.+..-- ..++..|+|
T Consensus 227 ~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~ 289 (410)
T KOG0410|consen 227 FVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVP 289 (410)
T ss_pred EEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCC
Confidence 78899999953 332223333 346899999999986532 556677876
No 409
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=94.11 E-value=0.039 Score=62.09 Aligned_cols=109 Identities=17% Similarity=0.142 Sum_probs=71.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
+.+| |.++|--|+|||+|+=+|+...=.-. .- +.+| -|||-..+. ..
T Consensus 8 kdVR-IvliGD~G~GKtSLImSL~~eef~~~---VP--~rl~--------~i~IPadvt-------------------Pe 54 (625)
T KOG1707|consen 8 KDVR-IVLIGDEGVGKTSLIMSLLEEEFVDA---VP--RRLP--------RILIPADVT-------------------PE 54 (625)
T ss_pred cceE-EEEECCCCccHHHHHHHHHhhhcccc---cc--ccCC--------ccccCCccC-------------------cC
Confidence 4455 78999999999999999975542110 00 1222 245532221 11
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecch-----hHH-HH---HH-----HhCCCHHHHHHHhh-CCCC
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----GVC-MY---AS-----KFGVDESKMMERLW-GENF 158 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~-----Gv~-~~---~~-----~~~~p~~~~inkld-g~~~ 158 (752)
.....++||+-..+=...+...++.||...+|-+.++ +++ .| .+ -.++|+|++-||.| ++++
T Consensus 55 ~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~ 131 (625)
T KOG1707|consen 55 NVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNE 131 (625)
T ss_pred cCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccc
Confidence 3348899999777766677889999999999986555 444 11 11 14689999999999 4444
No 410
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.83 E-value=0.06 Score=57.16 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=22.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
..++|+|+|+.|+||||++..|....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999996543
No 411
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.66 E-value=0.16 Score=54.04 Aligned_cols=36 Identities=19% Similarity=0.369 Sum_probs=31.0
Q ss_pred eEEEEEcCCCC-----------cccHHHHHHHHHhhcceEEEEecch
Q 004467 98 YLINLIDSPGH-----------VDFSSEVTAALRITDGALVVVDCIE 133 (752)
Q Consensus 98 ~~inliDtPGh-----------~df~~e~~~~l~~~D~avlvvda~~ 133 (752)
-.||+|||||. -||.+-...=+..||..+|+.|+-.
T Consensus 147 e~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hK 193 (532)
T KOG1954|consen 147 ESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHK 193 (532)
T ss_pred hheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhh
Confidence 37999999993 4788888888899999999999864
No 412
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=93.54 E-value=0.05 Score=60.11 Aligned_cols=105 Identities=21% Similarity=0.210 Sum_probs=59.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccce-EEEEEeeccchhccccCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~-~~~~~~~~~~~~~~~~~~~~~ 95 (752)
.+.|++.++|-++.|||++.+.+.. +.+.+-++ -.|-++-. -++.|
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtr----------advevqpY-------aFTTksL~vGH~dy---------------- 212 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTR----------ADDEVQPY-------AFTTKLLLVGHLDY---------------- 212 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccc----------cccccCCc-------ccccchhhhhhhhh----------------
Confidence 5789999999999999998876621 11111111 01111111 11222
Q ss_pred CceEEEEEcCCCCccc--------HHHHHHHHHhhc-ceEEEEecch--hHH--HHHHH--------hCCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHVDF--------SSEVTAALRITD-GALVVVDCIE--GVC--MYASK--------FGVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~df--------~~e~~~~l~~~D-~avlvvda~~--Gv~--~~~~~--------~~~p~~~~inkld 154 (752)
+-.++..|||||.-|= -...++||.-.- +++.+.|-++ |-. .+++- .+.|.++++||+|
T Consensus 213 kYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D 292 (620)
T KOG1490|consen 213 KYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKID 292 (620)
T ss_pred heeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeeccc
Confidence 2457889999995442 123456666544 4555667654 322 22222 2566778888888
No 413
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=93.53 E-value=0.092 Score=56.25 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=31.4
Q ss_pred HHHHHhhcccCCeeEEEEEeCCCCChHHHHHHHHHHcCC
Q 004467 7 EGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGI 45 (752)
Q Consensus 7 ~~~~~~~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~ 45 (752)
+.|+.+.+++.+-||+.+=|++|+|||||+-+||...|.
T Consensus 143 ~iL~~lv~N~PKkRy~lFkGPvNsGKTTlAAAlLdL~gG 181 (417)
T PF06431_consen 143 EILKCLVENIPKKRYWLFKGPVNSGKTTLAAALLDLCGG 181 (417)
T ss_dssp HHHHHHHHTBTTB-EEEEE-STTSSHHHHHHHHHHHH-E
T ss_pred HHHHHHhcCCCcceeEEEecCcCCchHHHHHHHHHhcCC
Confidence 455667778889999999999999999999999988873
No 414
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=93.50 E-value=0.08 Score=54.43 Aligned_cols=36 Identities=11% Similarity=0.064 Sum_probs=29.8
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecch
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~ 133 (752)
++|.+.||||||+.+ ..+..++..+|.+|+.+....
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~ 117 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTP 117 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcH
Confidence 468999999999775 557789999999998887764
No 415
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=93.50 E-value=0.23 Score=53.62 Aligned_cols=94 Identities=27% Similarity=0.376 Sum_probs=56.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCcc-------ccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ-------EVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGE 92 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~-------~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~ 92 (752)
..+||+|-+++|||||.++|......+.. +..|.+.+.|-.-.|-.. + . .+.
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~-~-~-------------------~c~ 61 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAE-I-V-------------------KCP 61 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHH-h-c-------------------CCC
Confidence 36899999999999999999544321110 012222233311111110 0 0 101
Q ss_pred CCCCceEEEEEcCCCCcc-------cHHHHHHHHHhhcceEEEEecchh
Q 004467 93 RNGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG 134 (752)
Q Consensus 93 ~~~~~~~inliDtPGh~d-------f~~e~~~~l~~~D~avlvvda~~G 134 (752)
.+...-.+.|+|.+|-+. +..+...-+|.+|+.+-||||.+.
T Consensus 62 ~k~~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~d 110 (372)
T COG0012 62 PKIRPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFGD 110 (372)
T ss_pred CcEEeeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecCC
Confidence 112234788999999543 455678889999999999999865
No 416
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=93.29 E-value=0.026 Score=53.79 Aligned_cols=108 Identities=15% Similarity=0.184 Sum_probs=70.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
+....+.|+|.-+.||||++.+.. .|+..+. -.++.-.|++ | |.|-+. ..
T Consensus 18 e~aiK~vivGng~VGKssmiqryC--kgifTkd-ykktIgvdfl--e--rqi~v~-----------------------~E 67 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYC--KGIFTKD-YKKTIGVDFL--E--RQIKVL-----------------------IE 67 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHh--ccccccc-cccccchhhh--h--HHHHhh-----------------------HH
Confidence 456678999999999999999873 3433331 1111123332 1 222211 12
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH----------HHHHHhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC----------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~----------~~~~~~~~p~~~~inkld 154 (752)
+.++.+-||.|...|..-+-.--|.|.+.|||.+.++--. -..+.-.||.+++-||+|
T Consensus 68 dvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKID 135 (246)
T KOG4252|consen 68 DVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKID 135 (246)
T ss_pred HHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccch
Confidence 4566678999999998777777899999999999887543 222234588877778877
No 417
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=93.22 E-value=0.47 Score=42.42 Aligned_cols=74 Identities=19% Similarity=0.202 Sum_probs=50.6
Q ss_pred EEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecC-------ceeeecccc--CCC
Q 004467 289 VSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGK-------KQETVEDVP--CGN 359 (752)
Q Consensus 289 V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~-------~~~~V~ea~--AGd 359 (752)
|.-+-.+.+.|. .+-+=||+|+|+.||.+.+.+.+ + ....||..|+...+. ++.++++|. +|-
T Consensus 5 VlEvk~~~G~G~-t~dvIl~~GtL~~GD~Iv~g~~~---G----pi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gv 76 (110)
T cd03703 5 VLEVKEEEGLGT-TIDVILYDGTLREGDTIVVCGLN---G----PIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGV 76 (110)
T ss_pred EEEEEEcCCCce-EEEEEEECCeEecCCEEEEccCC---C----CceEEEeEecCCCCchhhccccccceeeEEecCCCc
Confidence 333444667776 88899999999999999876422 1 112477777777663 345677777 677
Q ss_pred EEEEecccccc
Q 004467 360 TVAMVGLDQFI 370 (752)
Q Consensus 360 Ivai~Gl~~~~ 370 (752)
-+...||++..
T Consensus 77 kI~~~gL~~v~ 87 (110)
T cd03703 77 KILAPDLEKAI 87 (110)
T ss_pred EEEeCCCcccc
Confidence 77777888763
No 418
>PHA00729 NTP-binding motif containing protein
Probab=93.21 E-value=0.11 Score=52.86 Aligned_cols=42 Identities=10% Similarity=0.060 Sum_probs=32.6
Q ss_pred CcccCHHHHHHhhcccCCeeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 1 MVKFTAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
|.|....++..+.+. ...||.|.|.+|+|||||+.+|....+
T Consensus 1 ~~~~~k~~~~~l~~~--~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 1 MLWLAKKIVSAYNNN--GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CchHHHHHHHHHhcC--CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 566666666666542 446999999999999999999987654
No 419
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=93.17 E-value=0.3 Score=47.11 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~ 42 (752)
+.++|+|..|+|||||+++|+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999754
No 420
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.11 E-value=0.12 Score=53.17 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=29.0
Q ss_pred HHHHHhhcccCCeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 7 EGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 7 ~~~~~~~~~~~~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
+.|...+....+...++|+|..|||||||++.|....
T Consensus 21 ~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 21 RRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred HHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455555555778899999999999999999986443
No 421
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=93.02 E-value=0.077 Score=56.88 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=22.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
+....||+||-++.|||++++.|-..
T Consensus 305 kkqISVGfiGYPNvGKSSiINTLR~K 330 (572)
T KOG2423|consen 305 KKQISVGFIGYPNVGKSSIINTLRKK 330 (572)
T ss_pred ccceeeeeecCCCCchHHHHHHHhhc
Confidence 45678999999999999999999433
No 422
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=92.95 E-value=0.11 Score=47.22 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcC
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g 44 (752)
.|+|.|.++|||||++..|....|
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 378999999999999999976554
No 423
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.88 E-value=0.097 Score=51.49 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCc
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIA 47 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~ 47 (752)
+|.|+|++||||||++..|....+..+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~h 28 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPH 28 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 689999999999999999987766543
No 424
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.82 E-value=0.17 Score=52.17 Aligned_cols=141 Identities=17% Similarity=0.185 Sum_probs=66.5
Q ss_pred HHHHHhhcccCCeeEEEEEeCCCCChHHHHHHHHHHc---CC------Ccc--ccCCCccccCCc---hhHhHhcceecc
Q 004467 7 EGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAA---GI------IAQ--EVAGDVRMTDTR---ADEAERGITIKS 72 (752)
Q Consensus 7 ~~~~~~~~~~~~iRni~iighvd~GKTTL~~~ll~~~---g~------i~~--~~~g~~~~~D~~---~~E~eRgiTi~s 72 (752)
+-|+.+.....+-..|||-|.+|+|||||+++|.... |. ++. +..|-+-.-|.. .....-|+=|.|
T Consensus 17 ~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS 96 (266)
T PF03308_consen 17 ELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRS 96 (266)
T ss_dssp HHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEE
T ss_pred HHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEee
Confidence 4456666666677899999999999999999996442 20 111 111111111211 111122332222
Q ss_pred ceEEEEEeeccch---hccccCCCCCCceEEEEEcCCCCcccHHHHHHH-HHhhcceEEEEecchhHHHHHHHhC---CC
Q 004467 73 TGISLYYEMTDDA---LKSYKGERNGNEYLINLIDSPGHVDFSSEVTAA-LRITDGALVVVDCIEGVCMYASKFG---VD 145 (752)
Q Consensus 73 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~-l~~~D~avlvvda~~Gv~~~~~~~~---~p 145 (752)
....=. -+.. ....-...+.-+|.+.||-|-|-- +.+.. ...+|..++|+-...|=..++.|.| +.
T Consensus 97 ~atRG~---lGGls~~t~~~v~ll~aaG~D~IiiETVGvG----QsE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia 169 (266)
T PF03308_consen 97 MATRGS---LGGLSRATRDAVRLLDAAGFDVIIIETVGVG----QSEVDIADMADTVVLVLVPGLGDEIQAIKAGIMEIA 169 (266)
T ss_dssp E---SS---HHHHHHHHHHHHHHHHHTT-SEEEEEEESSS----THHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-
T ss_pred cCcCCC---CCCccHhHHHHHHHHHHcCCCEEEEeCCCCC----ccHHHHHHhcCeEEEEecCCCccHHHHHhhhhhhhc
Confidence 211000 0000 000000011236888999999842 22222 5689999999988776442233333 23
Q ss_pred HHHHHHHhh
Q 004467 146 ESKMMERLW 154 (752)
Q Consensus 146 ~~~~inkld 154 (752)
=++|+||.|
T Consensus 170 Di~vVNKaD 178 (266)
T PF03308_consen 170 DIFVVNKAD 178 (266)
T ss_dssp SEEEEE--S
T ss_pred cEEEEeCCC
Confidence 356789988
No 425
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.80 E-value=0.089 Score=52.95 Aligned_cols=97 Identities=25% Similarity=0.381 Sum_probs=63.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC-----ccccCCchhHhHh-cceeccceEEEEEeeccchhccccCC
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-----VRMTDTRADEAER-GITIKSTGISLYYEMTDDALKSYKGE 92 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~-----~~~~D~~~~E~eR-giTi~s~~~~~~~~~~~~~~~~~~~~ 92 (752)
--.-+|+|+.|||||||+..|....+.-.. .|+ ..++|-.++||.| ||+ +.|+++
T Consensus 30 GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt--~G~I~~~GedI~~l~~~ERAr~Gif-------LafQ~P---------- 90 (251)
T COG0396 30 GEVHAIMGPNGSGKSTLAYTIMGHPKYEVT--EGEILFDGEDILELSPDERARAGIF-------LAFQYP---------- 90 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCceEe--cceEEECCcccccCCHhHHHhcCCE-------EeecCC----------
Confidence 346789999999999999999655443221 232 3589999999987 554 345421
Q ss_pred CCCCceEEEEEcCCC--CcccHHHHHHHHHhhcceEEEEecchhHHHHHHHhCCCH
Q 004467 93 RNGNEYLINLIDSPG--HVDFSSEVTAALRITDGALVVVDCIEGVCMYASKFGVDE 146 (752)
Q Consensus 93 ~~~~~~~inliDtPG--h~df~~e~~~~l~~~D~avlvvda~~Gv~~~~~~~~~p~ 146 (752)
..-|| -.+|......+.+..+. + +-+..+-+...++.++++.
T Consensus 91 ----------~ei~GV~~~~fLr~a~n~~~~~~~-~-~~~~~~~~~e~~~~l~~~~ 134 (251)
T COG0396 91 ----------VEIPGVTNSDFLRAAMNARRGARG-I-LPEFIKELKEKAELLGLDE 134 (251)
T ss_pred ----------ccCCCeeHHHHHHHHHHhhhcccc-c-cHHHHHHHHHHHHHcCCCH
Confidence 34577 35788777777777776 2 3333344445566666655
No 426
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.76 E-value=0.13 Score=50.01 Aligned_cols=107 Identities=11% Similarity=0.095 Sum_probs=71.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
-++.++++|-.+.||||...+.+ +|-.+ +.---|+....-.+.+.. +.+.
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~l--tgeFe----------------~~y~at~Gv~~~pl~f~t------------n~g~ 58 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHL--TGEFE----------------KTYPATLGVEVHPLLFDT------------NRGQ 58 (216)
T ss_pred ceEEEEEecCCcccccchhhhhh--cccce----------------ecccCcceeEEeeeeeec------------ccCc
Confidence 38899999999999999999986 22221 122234444444444431 1224
Q ss_pred eEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHH-HhCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYAS-KFGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~-~~~~p~~~~inkld 154 (752)
.+++.-||-|.+.|.+---..--..-+|++++|...-+. .+++ .-++|+++.-||.|
T Consensus 59 irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvD 125 (216)
T KOG0096|consen 59 IRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVD 125 (216)
T ss_pred EEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeecccee
Confidence 789999999988876332222235678999999987665 3333 34689888889988
No 427
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=92.70 E-value=0.16 Score=54.80 Aligned_cols=115 Identities=16% Similarity=0.189 Sum_probs=61.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCC----ccccCCCccccCCchhHhH--hcceeccceEEEEEeeccch---hcc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGII----AQEVAGDVRMTDTRADEAE--RGITIKSTGISLYYEMTDDA---LKS 88 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i----~~~~~g~~~~~D~~~~E~e--RgiTi~s~~~~~~~~~~~~~---~~~ 88 (752)
++....+.|-.|||||||+++|+...... -..+.|++ -.|..-.+.. .=+++..+.+.+.- .+.. +..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v-~iD~~ll~~~~~~v~eL~~GCiCCs~--~~~l~~~l~~ 79 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEV-SVDDQLIGDRATQIKTLTNGCICCSR--SNELEDALLD 79 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCc-cccHHHHhCcCceEEEECCCEEEEcc--CchHHHHHHH
Confidence 56778899999999999999999653211 11124432 1232212111 11234444443332 2211 111
Q ss_pred ccCC-CC-CCceEEEEEcCCCCcccHHHHHHHH---------HhhcceEEEEecchhHH
Q 004467 89 YKGE-RN-GNEYLINLIDSPGHVDFSSEVTAAL---------RITDGALVVVDCIEGVC 136 (752)
Q Consensus 89 ~~~~-~~-~~~~~inliDtPGh~df~~e~~~~l---------~~~D~avlvvda~~Gv~ 136 (752)
+... .. .......+|-|-|-.|- ..+...+ -..|+.|.||||..+..
T Consensus 80 l~~~~~~~~~~~d~IvIEttG~a~p-~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~ 137 (318)
T PRK11537 80 LLDNLDKGNIQFDRLVIECTGMADP-GPIIQTFFSHEVLCQRYLLDGVIALVDAVHADE 137 (318)
T ss_pred HHHHHhccCCCCCEEEEECCCccCH-HHHHHHHhcChhhcccEEeccEEEEEEhhhhhh
Confidence 1111 00 01245578999998773 3444443 13589999999998754
No 428
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.66 E-value=0.11 Score=49.01 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHH
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~ 42 (752)
.|+|+|+.|+|||||++.|+..
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999755
No 429
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.51 E-value=0.13 Score=51.03 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=22.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
..-.+++|+|..|||||||+.+|+..
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34679999999999999999998643
No 430
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.38 E-value=0.16 Score=50.46 Aligned_cols=57 Identities=19% Similarity=0.433 Sum_probs=39.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCc-----cccCCchhH--hHhcceeccceEEEEEe
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDV-----RMTDTRADE--AERGITIKSTGISLYYE 80 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~-----~~~D~~~~E--~eRgiTi~s~~~~~~~~ 80 (752)
-..+|+|+.|+|||||...| +|-.... .|+. ..-++.+.| +.|++--+.+..+|.|.
T Consensus 28 ev~ailGPNGAGKSTlLk~L---sGel~p~-~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFt 91 (259)
T COG4559 28 EVLAILGPNGAGKSTLLKAL---SGELSPD-SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFT 91 (259)
T ss_pred cEEEEECCCCccHHHHHHHh---hCccCCC-CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceE
Confidence 46799999999999999999 4443321 3332 244556665 66777777777777765
No 431
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.37 E-value=0.13 Score=52.31 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=22.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD 53 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~ 53 (752)
--++|+|+.|||||||++.| |.+.+...|.
T Consensus 32 e~vaI~GpSGSGKSTLLnii----g~ld~pt~G~ 61 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLL----GGLDKPTSGE 61 (226)
T ss_pred CEEEEECCCCCCHHHHHHHH----hcccCCCCce
Confidence 47899999999999999877 3344444554
No 432
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=92.32 E-value=0.11 Score=42.52 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHH
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~ 42 (752)
.|++.|.+++||||++++|...
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999654
No 433
>PRK05480 uridine/cytidine kinase; Provisional
Probab=92.18 E-value=0.14 Score=51.75 Aligned_cols=27 Identities=11% Similarity=0.193 Sum_probs=23.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
.+...|+|.|..|||||||+..|....
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999996553
No 434
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.02 E-value=0.18 Score=52.32 Aligned_cols=48 Identities=23% Similarity=0.370 Sum_probs=32.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCc-----cccCCchhHhHhccee
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDV-----RMTDTRADEAERGITI 70 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~-----~~~D~~~~E~eRgiTi 70 (752)
--.++|+|+.|||||||+.+| +|.+.. ..|.+ .+.+....|..|-+..
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l---~g~l~p-~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCL---AGLLKP-KSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHH---hccCCC-CCCEEEECCCchhhcCHHHHhhhEEE
Confidence 357899999999999999999 444432 13432 2444556677776654
No 435
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=91.99 E-value=0.16 Score=49.63 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=22.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
.+...++|+|..|+|||||+++|+..
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 34568999999999999999999744
No 436
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=91.95 E-value=0.13 Score=52.32 Aligned_cols=25 Identities=40% Similarity=0.575 Sum_probs=21.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCcc
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQ 48 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~ 48 (752)
.|||+||.|||||||+.-| +|++..
T Consensus 55 ~vGiiG~NGaGKSTLlkli---aGi~~P 79 (249)
T COG1134 55 RVGIIGHNGAGKSTLLKLI---AGIYKP 79 (249)
T ss_pred EEEEECCCCCcHHHHHHHH---hCccCC
Confidence 5899999999999999877 666655
No 437
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=91.94 E-value=0.35 Score=47.06 Aligned_cols=34 Identities=29% Similarity=0.257 Sum_probs=28.1
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~G 134 (752)
.+.+|||||..+. ....++..+|.+|+|+++...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~ 97 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS 97 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc
Confidence 6889999986543 567889999999999988764
No 438
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=91.88 E-value=0.18 Score=50.78 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=27.0
Q ss_pred hcccCCeeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 13 ~~~~~~iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
|..+++.+-|||.|..+|||||++..|...-+
T Consensus 2 ~~~~~~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 2 MKKPEKVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred CCCCCceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 44446778999999999999999999977665
No 439
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=91.86 E-value=0.15 Score=56.84 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=20.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHH
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLV 40 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll 40 (752)
..+||++|=+|.|||+++++|.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLv 335 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALV 335 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHh
Confidence 6899999999999999999995
No 440
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=91.76 E-value=0.18 Score=50.87 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=23.6
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
+++-..|+|+|+.|||||||+++|....
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3556789999999999999999997543
No 441
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.73 E-value=0.87 Score=48.32 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=27.0
Q ss_pred HHHHHhhcccCCeeEEEEEeCCCCChHHHHHHH
Q 004467 7 EGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSL 39 (752)
Q Consensus 7 ~~~~~~~~~~~~iRni~iighvd~GKTTL~~~l 39 (752)
+.+.+++-...+.-.|+++|.-|+|||||+..|
T Consensus 176 d~a~~ll~~~tdf~VIgvlG~QgsGKStllslL 208 (491)
T KOG4181|consen 176 DNARKLLHKTTDFTVIGVLGGQGSGKSTLLSLL 208 (491)
T ss_pred hHHHHHhhcCCCeeEEEeecCCCccHHHHHHHH
Confidence 445555656677889999999999999999877
No 442
>PRK08118 topology modulation protein; Reviewed
Probab=91.72 E-value=0.17 Score=49.29 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=22.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGI 45 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~ 45 (752)
+.|.|+|..|||||||+..|-...+.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36899999999999999999766653
No 443
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=91.67 E-value=0.15 Score=54.90 Aligned_cols=115 Identities=20% Similarity=0.136 Sum_probs=62.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCcc----ccCCCcccc--CCchhHhHhcceeccceEEEEEeecc-chhccccCC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ----EVAGDVRMT--DTRADEAERGITIKSTGISLYYEMTD-DALKSYKGE 92 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~----~~~g~~~~~--D~~~~E~eRgiTi~s~~~~~~~~~~~-~~~~~~~~~ 92 (752)
+...|-|--|||||||+++||.+...-+- .+.|++.+- +.....-+.=..+..+.+.++-+... +.+..+..
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~- 80 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLR- 80 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHh-
Confidence 45567888899999999999987661100 124442221 11222222234455555554432110 11111222
Q ss_pred CCCCceEEEEEcCCCCccc-------HH-HHHHHHHhhcceEEEEecchhHH
Q 004467 93 RNGNEYLINLIDSPGHVDF-------SS-EVTAALRITDGALVVVDCIEGVC 136 (752)
Q Consensus 93 ~~~~~~~inliDtPGh~df-------~~-e~~~~l~~~D~avlvvda~~Gv~ 136 (752)
... .....+|-|-|-.+= .. ...+..-..|++|-||||.....
T Consensus 81 ~~~-~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~ 131 (323)
T COG0523 81 RRD-RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLE 131 (323)
T ss_pred ccC-CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhh
Confidence 122 256678999996552 22 23333446789999999998766
No 444
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=91.57 E-value=0.18 Score=47.14 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.7
Q ss_pred EEEEeCCCCChHHHHHHHHHHcC
Q 004467 22 MSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 22 i~iighvd~GKTTL~~~ll~~~g 44 (752)
|.++|++++||||+++.|....+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 67999999999999999986665
No 445
>PRK07261 topology modulation protein; Provisional
Probab=91.56 E-value=0.18 Score=49.30 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=20.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcC
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g 44 (752)
.|+|+|.+|+|||||+..|....+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999865544
No 446
>PRK07667 uridine kinase; Provisional
Probab=91.54 E-value=0.25 Score=49.22 Aligned_cols=37 Identities=22% Similarity=0.193 Sum_probs=26.6
Q ss_pred HHHHHhhccc-CCeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 7 EGLRRIMDFK-HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 7 ~~~~~~~~~~-~~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
+.+...+... ..-+.|||.|..++|||||++.|....
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4444444433 233688999999999999999996553
No 447
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=91.42 E-value=0.16 Score=49.87 Aligned_cols=24 Identities=25% Similarity=0.087 Sum_probs=20.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHH
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVA 41 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~ 41 (752)
.-..++++|+.|+|||||+..++.
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 346789999999999999998864
No 448
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.37 E-value=0.39 Score=51.14 Aligned_cols=131 Identities=23% Similarity=0.214 Sum_probs=70.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCc---cccCC---chhHhHh--cceeccceEEEEEeeccchh---
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDV---RMTDT---RADEAER--GITIKSTGISLYYEMTDDAL--- 86 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~---~~~D~---~~~E~eR--giTi~s~~~~~~~~~~~~~~--- 86 (752)
+.-.|.++|-.|+||||.+..|-++.-. .|.. ...|+ -..||-+ |=-....++.-.+ ..++..
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~-----~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~-G~DpAaVaf 211 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQ-----QGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKE-GADPAAVAF 211 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHH-----CCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCC-CCCcHHHHH
Confidence 4567899999999999999999654321 1210 01121 1122211 1111112222111 111110
Q ss_pred ccccCCCCCCceEEEEEcCCC----CcccHHHHHHHHHhh---cc-----eEEEEecchhHH--HHHHHhC--CCH-HHH
Q 004467 87 KSYKGERNGNEYLINLIDSPG----HVDFSSEVTAALRIT---DG-----ALVVVDCIEGVC--MYASKFG--VDE-SKM 149 (752)
Q Consensus 87 ~~~~~~~~~~~~~inliDtPG----h~df~~e~~~~l~~~---D~-----avlvvda~~Gv~--~~~~~~~--~p~-~~~ 149 (752)
..++ ..+.+++-+.||||.| +.+++.|+..-.|++ +. .++|+||+.|=. .+++.|+ ++. -++
T Consensus 212 DAi~-~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l~GiI 290 (340)
T COG0552 212 DAIQ-AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGLDGII 290 (340)
T ss_pred HHHH-HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCCceEE
Confidence 0111 1233578899999999 456777766666654 33 677789999855 4555543 222 234
Q ss_pred HHHhhC
Q 004467 150 MERLWG 155 (752)
Q Consensus 150 inkldg 155 (752)
++|+||
T Consensus 291 lTKlDg 296 (340)
T COG0552 291 LTKLDG 296 (340)
T ss_pred EEeccc
Confidence 589983
No 449
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=91.35 E-value=0.12 Score=65.53 Aligned_cols=56 Identities=14% Similarity=0.094 Sum_probs=36.6
Q ss_pred EEEEEcCCCCcc-----------cHHHHHHHH------HhhcceEEEEecchhHH------------------HHHHHh-
Q 004467 99 LINLIDSPGHVD-----------FSSEVTAAL------RITDGALVVVDCIEGVC------------------MYASKF- 142 (752)
Q Consensus 99 ~inliDtPGh~d-----------f~~e~~~~l------~~~D~avlvvda~~Gv~------------------~~~~~~- 142 (752)
.-.+|||+|.-- --.....-| +-.||+|++||+.+=.. .+.+.+
T Consensus 162 ~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg 241 (1169)
T TIGR03348 162 EAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG 241 (1169)
T ss_pred CEEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 556999999211 011233333 24799999999886432 333334
Q ss_pred -CCCHHHHHHHhh
Q 004467 143 -GVDESKMMERLW 154 (752)
Q Consensus 143 -~~p~~~~inkld 154 (752)
.+|+.++++|||
T Consensus 242 ~~~PVYvv~Tk~D 254 (1169)
T TIGR03348 242 ARFPVYLVLTKAD 254 (1169)
T ss_pred CCCCEEEEEecch
Confidence 588999999999
No 450
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=91.33 E-value=0.2 Score=49.22 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=24.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGII 46 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i 46 (752)
++..|+|+|.+||||||++..|....|..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~ 30 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFT 30 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 45679999999999999999998766643
No 451
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=91.28 E-value=0.19 Score=48.39 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=20.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHH
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~ 42 (752)
...++|+|..|+|||||+++|+..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~ 25 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRK 25 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHH
Confidence 357899999999999999999644
No 452
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=91.27 E-value=0.37 Score=52.78 Aligned_cols=133 Identities=16% Similarity=0.174 Sum_probs=66.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCcc-ccCCCccccCCc---hhHhHhcceeccceEEEEEeeccchhccccCCC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ-EVAGDVRMTDTR---ADEAERGITIKSTGISLYYEMTDDALKSYKGER 93 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~-~~~g~~~~~D~~---~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~ 93 (752)
+.|+|+++|+.|+||||.+-.|-........ ...| --.+|+. ..||-+..---.. +++.--+..+.+. +...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVa-iITtDtYRIGA~EQLk~Ya~im~-vp~~vv~~~~el~--~ai~ 277 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVA-IITTDTYRIGAVEQLKTYADIMG-VPLEVVYSPKELA--EAIE 277 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceE-EEEeccchhhHHHHHHHHHHHhC-CceEEecCHHHHH--HHHH
Confidence 3799999999999999999988655441111 1122 1234442 2344332210000 0000000000000 0001
Q ss_pred CCCceEEEEEcCCCCcccHHHHHHHHH----hh--cceEEEEecchhHH---HHHHHhC-CCH-HHHHHHhh
Q 004467 94 NGNEYLINLIDSPGHVDFSSEVTAALR----IT--DGALVVVDCIEGVC---MYASKFG-VDE-SKMMERLW 154 (752)
Q Consensus 94 ~~~~~~inliDtPGh~df~~e~~~~l~----~~--D~avlvvda~~Gv~---~~~~~~~-~p~-~~~inkld 154 (752)
.-+++.+.||||-|+.-...+.+.-|. .+ .-.-||++|+.--. .....|+ +|. -++++|||
T Consensus 278 ~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I~TKlD 349 (407)
T COG1419 278 ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLIFTKLD 349 (407)
T ss_pred HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcceeEEEccc
Confidence 123678999999997665555444443 22 34567888885433 3333333 333 23347887
No 453
>PRK08233 hypothetical protein; Provisional
Probab=91.24 E-value=0.21 Score=48.80 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=22.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
...|+|.|..|+|||||+++|....+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46799999999999999999976543
No 454
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.17 E-value=0.15 Score=52.11 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=18.3
Q ss_pred eEEEEEeCCCCChHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSL 39 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~l 39 (752)
=-|+|+||.|+|||||.+.+
T Consensus 30 EfvsilGpSGcGKSTLLrii 49 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLI 49 (248)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999988
No 455
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.16 E-value=1 Score=41.73 Aligned_cols=79 Identities=18% Similarity=0.177 Sum_probs=52.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
.|..+|--++||||++-.|-.......- -|+--++-+..|+ +..+
T Consensus 19 ~ilmlGLd~aGKTtiLyKLkl~~~~~~i-------------------pTvGFnvetVtyk----------------N~kf 63 (180)
T KOG0071|consen 19 RILMLGLDAAGKTTILYKLKLGQSVTTI-------------------PTVGFNVETVTYK----------------NVKF 63 (180)
T ss_pred eEEEEecccCCceehhhHHhcCCCcccc-------------------cccceeEEEEEee----------------eeEE
Confidence 3567888999999998777322111100 0222223334564 7899
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~G 134 (752)
|+=|.-|....-.--.+-.....+.|+|+|+..-
T Consensus 64 NvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~ 97 (180)
T KOG0071|consen 64 NVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADR 97 (180)
T ss_pred eeeeccCchhhhHHHHhhccCCceEEEEEeccch
Confidence 9999999866555555556678999999999865
No 456
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=91.13 E-value=0.2 Score=49.18 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
++.|.+.|++|||||||+++++...
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L 37 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRAL 37 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHH
Confidence 6899999999999999999997654
No 457
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=91.13 E-value=0.53 Score=40.13 Aligned_cols=70 Identities=27% Similarity=0.244 Sum_probs=47.8
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCCccccCCC-ccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 22 i~iighvd~GKTTL~~~ll~~~g~i~~~~~g~-~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
+++.|..|+||||++..|...... .|. +...| .+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v~~~~----------------------------------------d~ 36 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRVLLID----------------------------------------DY 36 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEC----------------------------------------CE
Confidence 578888899999999999654321 121 11111 45
Q ss_pred EEEcCCCCcccHHH-HHHHHHhhcceEEEEecchhHH
Q 004467 101 NLIDSPGHVDFSSE-VTAALRITDGALVVVDCIEGVC 136 (752)
Q Consensus 101 nliDtPGh~df~~e-~~~~l~~~D~avlvvda~~Gv~ 136 (752)
.++|+||-.+.... ....+..+|..+++++....-.
T Consensus 37 iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~~ 73 (99)
T cd01983 37 VLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALAV 73 (99)
T ss_pred EEEeCCCCccchhhhhhhhhhhCCEEEEecCCchhhH
Confidence 78999997654321 2577889999999999886543
No 458
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=91.03 E-value=0.2 Score=54.02 Aligned_cols=42 Identities=24% Similarity=0.353 Sum_probs=30.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC-----ccccCCchhHhH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-----VRMTDTRADEAE 65 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~-----~~~~D~~~~E~e 65 (752)
--++++|+.|||||||++.+ +|..... .|+ ..++|..|.+|.
T Consensus 30 ef~vllGPSGcGKSTlLr~I---AGLe~~~-~G~I~i~g~~vt~l~P~~R~ 76 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMI---AGLEEPT-SGEILIDGRDVTDLPPEKRG 76 (338)
T ss_pred CEEEEECCCCCCHHHHHHHH---hCCCCCC-CceEEECCEECCCCChhHCC
Confidence 46899999999999999988 5554432 232 457887777754
No 459
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=90.94 E-value=0.21 Score=49.85 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcC
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g 44 (752)
.|+|.|+++||||||+.+|....+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999976654
No 460
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=90.83 E-value=0.055 Score=50.63 Aligned_cols=84 Identities=17% Similarity=0.165 Sum_probs=52.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
.+.++|..=.|||+|+=+..... +.+ ++=.|+++++.+-..+ .+...-.+
T Consensus 15 K~VLLGEGCVGKtSLVLRy~Enk------------Fn~------kHlsTlQASF~~kk~n------------~ed~ra~L 64 (218)
T KOG0088|consen 15 KIVLLGEGCVGKTSLVLRYVENK------------FNC------KHLSTLQASFQNKKVN------------VEDCRADL 64 (218)
T ss_pred EEEEEcCCccchhHHHHHHHHhh------------cch------hhHHHHHHHHhhcccc------------cccceeee
Confidence 57889999999999996664221 111 1112444443221111 12234578
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~G 134 (752)
++-||.|...|..------+.+|+|+||.|.++-
T Consensus 65 ~IWDTAGQErfHALGPIYYRgSnGalLVyDITDr 98 (218)
T KOG0088|consen 65 HIWDTAGQERFHALGPIYYRGSNGALLVYDITDR 98 (218)
T ss_pred eeeeccchHhhhccCceEEeCCCceEEEEeccch
Confidence 9999999988863222223789999999999864
No 461
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=90.83 E-value=0.29 Score=49.80 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHH
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVA 41 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~ 41 (752)
--.+||+|..|+|||||+..|+.
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 34799999999999999999953
No 462
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=90.80 E-value=0.99 Score=47.77 Aligned_cols=36 Identities=11% Similarity=0.458 Sum_probs=29.1
Q ss_pred HHHHHhhcccCC--eeEEEEEeCCCCChHHHHHHHHHH
Q 004467 7 EGLRRIMDFKHN--IRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 7 ~~~~~~~~~~~~--iRni~iighvd~GKTTL~~~ll~~ 42 (752)
+.|..++..|.+ ..|+.|+|..+-||||+++++...
T Consensus 47 ~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~ 84 (302)
T PF05621_consen 47 DRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRL 84 (302)
T ss_pred HHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHH
Confidence 456677777654 569999999999999999999643
No 463
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=90.72 E-value=0.19 Score=51.19 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=19.6
Q ss_pred EEEEeCCCCChHHHHHHHHHHc
Q 004467 22 MSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 22 i~iighvd~GKTTL~~~ll~~~ 43 (752)
|||.|..|||||||+..|....
T Consensus 2 igI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHH
Confidence 7999999999999999996553
No 464
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=90.54 E-value=0.21 Score=49.98 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHH
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSL 39 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~l 39 (752)
++--.++|+|+.|||||||+.+|
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 34467899999999999999999
No 465
>PRK06547 hypothetical protein; Provisional
Probab=90.45 E-value=0.31 Score=47.69 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=25.1
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
......|+|.|..|||||||++.|....+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46678999999999999999999977654
No 466
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=90.43 E-value=0.45 Score=44.67 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchh
Q 004467 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~G 134 (752)
|.+.+||||++. ......++..+|.+++|+++..-
T Consensus 45 yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~~ 79 (139)
T cd02038 45 YDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEPT 79 (139)
T ss_pred CCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCChh
Confidence 678899999864 44567889999999999998754
No 467
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=90.32 E-value=0.28 Score=52.89 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=24.9
Q ss_pred HHHHhhcccCCeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 8 GLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 8 ~~~~~~~~~~~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
+|..++. .-.||.|.|..|||||||+++|+..
T Consensus 136 ~L~~~v~---~~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 136 VIRSAID---SRLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred HHHHHHH---cCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4444443 3468999999999999999999754
No 468
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=90.26 E-value=0.22 Score=54.04 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=22.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
.-+||.|+|..|||||||+++|+..
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ 183 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALRE 183 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhh
Confidence 4679999999999999999999643
No 469
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=90.23 E-value=0.096 Score=49.30 Aligned_cols=42 Identities=10% Similarity=0.124 Sum_probs=35.2
Q ss_pred HHHHHHHHhhcceEEEEecchhHH-------HHHHHh--CCCHHHHHHHhh
Q 004467 113 SEVTAALRITDGALVVVDCIEGVC-------MYASKF--GVDESKMMERLW 154 (752)
Q Consensus 113 ~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~--~~p~~~~inkld 154 (752)
+++.+++..+|.+++|+|+..+.. .++... ++|.++++||+|
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~D 53 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKAD 53 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechh
Confidence 578899999999999999988754 444444 889999999998
No 470
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=90.20 E-value=0.38 Score=48.54 Aligned_cols=32 Identities=22% Similarity=0.446 Sum_probs=24.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCc
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDV 54 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~ 54 (752)
--.++|+|+.|+|||||+..| +|.+.. ..|++
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l---~G~~~p-~~G~i 56 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAI---LGLLKP-TSGSI 56 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHH---cCCCCC-CCCEE
Confidence 347899999999999999988 455432 25654
No 471
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=90.16 E-value=0.25 Score=45.07 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g 44 (752)
+++.++|+.|+||||++..|+...+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 5789999999999999999976544
No 472
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=90.14 E-value=0.28 Score=47.91 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
.++|.++|+.|+|||||+..|....|
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 45799999999999999999976654
No 473
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=90.13 E-value=0.24 Score=49.40 Aligned_cols=21 Identities=14% Similarity=0.446 Sum_probs=19.2
Q ss_pred EEEEeCCCCChHHHHHHHHHH
Q 004467 22 MSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 22 i~iighvd~GKTTL~~~ll~~ 42 (752)
|+|.|+.|||||||+++|...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 799999999999999999655
No 474
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=90.11 E-value=0.27 Score=43.84 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=20.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHH
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLV 40 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll 40 (752)
-..++|+|+.++|||||+..|+
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4678999999999999999986
No 475
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=90.09 E-value=0.38 Score=37.19 Aligned_cols=56 Identities=21% Similarity=0.226 Sum_probs=49.2
Q ss_pred EEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhhcCchHHhhhhCCCc
Q 004467 643 IQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQ 701 (752)
Q Consensus 643 I~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~ 701 (752)
|++|-..+|.|-..|.+..+.|.+.+-.+ .+.+...+|..+.-.|...|..+|+|+
T Consensus 1 i~~~Y~~~~~v~~~l~~~~~~i~~~~y~~---~V~~~v~v~~~~~~~f~~~l~~~t~G~ 56 (56)
T PF09186_consen 1 ISCDYSQYGKVERLLEQNGIEIVDEDYTD---DVTLTVAVPEEEVEEFKAQLTDLTSGR 56 (56)
T ss_dssp EEE-CCCHHHHHHHHHHTTTEEEEEEECT---TEEEEEEEECCCHHHHHHHHHHHTTT-
T ss_pred CEechhhHHHHHHHHHHCCCEEEcceecc---eEEEEEEECHHHHHHHHHHHHHHcCCC
Confidence 57888999999999999999999887643 589999999999999999999999996
No 476
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=90.01 E-value=0.82 Score=40.72 Aligned_cols=34 Identities=21% Similarity=0.048 Sum_probs=27.8
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~G 134 (752)
.+.+||||+..+. ....++..+|.+++|++...-
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~~ 77 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDLP 77 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCChH
Confidence 6789999997653 456789999999999988754
No 477
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=89.96 E-value=4.1 Score=34.32 Aligned_cols=47 Identities=21% Similarity=0.401 Sum_probs=33.0
Q ss_pred eEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEe
Q 004467 302 FAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 364 (752)
Q Consensus 302 v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~ 364 (752)
+..|+|..|+|++|..|- + .+++.+..+.- +.+++++|.+|+-||+.
T Consensus 20 ~IvG~V~~G~ik~G~~l~--------G-------~~iG~I~sIe~-~~k~v~~A~~G~eVai~ 66 (81)
T PF14578_consen 20 AIVGEVLEGIIKPGYPLD--------G-------RKIGRIKSIED-NGKNVDEAKKGDEVAIS 66 (81)
T ss_dssp EEEEEEEEEEEETT-EEC--------S-------SCEEEEEEEEE-TTEEESEEETT-EEEEE
T ss_pred eEEEEEeeeEEeCCCccC--------C-------EEEEEEEEeEE-CCcCccccCCCCEEEEE
Confidence 455699999999999981 1 13444444443 55899999999999985
No 478
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=89.93 E-value=0.26 Score=44.91 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=19.6
Q ss_pred EEEEeCCCCChHHHHHHHHHHc
Q 004467 22 MSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 22 i~iighvd~GKTTL~~~ll~~~ 43 (752)
|+|.|..|+||||++..|-...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999996654
No 479
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=89.87 E-value=0.29 Score=48.82 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g 44 (752)
..|+|-|.+|+|||||+++|-..-|
T Consensus 5 ~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 5 MVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred cEEEEecccccCHHHHHHHHHHHhC
Confidence 4689999999999999999965544
No 480
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=89.86 E-value=0.44 Score=51.80 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=28.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG 52 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g 52 (752)
+-+-++++|++|+|||||+++|....+..+++..|
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG 111 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEG 111 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccC
Confidence 45678999999999999999998777766665555
No 481
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=89.63 E-value=0.41 Score=48.32 Aligned_cols=26 Identities=19% Similarity=0.455 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCcc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ 48 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~ 48 (752)
-.++++|+.|+|||||+.++ .|.+..
T Consensus 30 eiv~llG~NGaGKTTlLkti---~Gl~~~ 55 (237)
T COG0410 30 EIVALLGRNGAGKTTLLKTI---MGLVRP 55 (237)
T ss_pred CEEEEECCCCCCHHHHHHHH---hCCCCC
Confidence 46899999999999999999 454443
No 482
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=89.61 E-value=0.3 Score=45.32 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=18.7
Q ss_pred eEEEEEeCCCCChHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSL 39 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~l 39 (752)
..++|+|+.|+|||||+..|
T Consensus 12 ~~~~i~G~nGsGKStLl~~l 31 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKAL 31 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHH
T ss_pred CEEEEEccCCCccccceeee
Confidence 57899999999999999988
No 483
>PRK14738 gmk guanylate kinase; Provisional
Probab=89.56 E-value=0.31 Score=49.17 Aligned_cols=29 Identities=7% Similarity=0.028 Sum_probs=24.8
Q ss_pred hcccCCeeEEEEEeCCCCChHHHHHHHHH
Q 004467 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVA 41 (752)
Q Consensus 13 ~~~~~~iRni~iighvd~GKTTL~~~ll~ 41 (752)
.+.+.+.+-|+|+|..|+|||||+++|..
T Consensus 7 ~~~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 7 FNKPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred cCCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 34567788999999999999999999964
No 484
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=89.53 E-value=0.35 Score=51.73 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=22.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
.-+||.|+|..|||||||+.+|+..
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~ 155 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAE 155 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999754
No 485
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=89.44 E-value=0.3 Score=49.53 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g 44 (752)
-.++|+|+.|||||||+++|....|
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~~~~G 50 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSMLFVFG 50 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999986555
No 486
>PRK13949 shikimate kinase; Provisional
Probab=89.36 E-value=0.36 Score=47.01 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g 44 (752)
++|.++|+.|+|||||...|-...|
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999998866555
No 487
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=89.35 E-value=1.4 Score=46.99 Aligned_cols=108 Identities=19% Similarity=0.270 Sum_probs=61.3
Q ss_pred hhcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeecc-chhcccc
Q 004467 12 IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD-DALKSYK 90 (752)
Q Consensus 12 ~~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~-~~~~~~~ 90 (752)
+|....+-..+||+|-+++||||+.++|.... +|-..| -+ .||+.......-.+.. ..+..+.
T Consensus 13 ~~gR~~~~lkiGIVGlPNvGKST~fnalT~~~-------a~~~Nf-PF--------~TIdPn~a~V~v~d~Rfd~l~~~Y 76 (391)
T KOG1491|consen 13 LLGRDGNNLKIGIVGLPNVGKSTFFNALTKSK-------AGAANF-PF--------CTIDPNEARVEVPDSRFDLLCPIY 76 (391)
T ss_pred cccCCCCcceeeEeeCCCCchHHHHHHHhcCC-------CCccCC-Cc--------ceeccccceeecCchHHHHHHHhc
Confidence 45455566789999999999999999994221 221001 01 1333222222211000 0011111
Q ss_pred CCCCCCceEEEEEcCCCCcc-------cHHHHHHHHHhhcceEEEEecchhH
Q 004467 91 GERNGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGV 135 (752)
Q Consensus 91 ~~~~~~~~~inliDtPGh~d-------f~~e~~~~l~~~D~avlvvda~~Gv 135 (752)
.......-.+++.|..|-+. +.....+=+|.+|+.+=||+|-+.-
T Consensus 77 ~~~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~d~ 128 (391)
T KOG1491|consen 77 GPKSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFEDT 128 (391)
T ss_pred CCcceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecCcc
Confidence 11222234799999988443 4445677789999999999988763
No 488
>PRK06696 uridine kinase; Validated
Probab=89.35 E-value=0.32 Score=49.63 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=24.1
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
..+...|+|.|..+||||||++.|....
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999997554
No 489
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=89.34 E-value=0.43 Score=46.59 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=21.0
Q ss_pred HHHHhh--cccCCeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 8 GLRRIM--DFKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 8 ~~~~~~--~~~~~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
.+...+ ......+++.|.|..|+|||||+.+++..
T Consensus 11 ~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 11 RLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp HHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 344444 23456799999999999999999998654
No 490
>PTZ00301 uridine kinase; Provisional
Probab=89.23 E-value=0.31 Score=49.26 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVA 41 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~ 41 (752)
.-|||.|.++||||||+.+|..
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHH
Confidence 5699999999999999998853
No 491
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=89.11 E-value=0.39 Score=50.50 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=26.7
Q ss_pred HHHHhhccc-CCeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 8 GLRRIMDFK-HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 8 ~~~~~~~~~-~~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
.+...+... ..-.||.|.|..||||||++.+|+..
T Consensus 115 ~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~ 150 (270)
T PF00437_consen 115 EIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEE 150 (270)
T ss_dssp HHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHhhccccceEEEEECCCccccchHHHHHhhh
Confidence 344444322 45789999999999999999999754
No 492
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=89.06 E-value=0.34 Score=51.44 Aligned_cols=24 Identities=29% Similarity=0.185 Sum_probs=20.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHH
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLV 40 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll 40 (752)
+....|||+|.+|||||||++.|.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 445789999999999999998774
No 493
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=89.00 E-value=0.35 Score=51.00 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~ 42 (752)
+.|+|+|..|+|||||+.+|+..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~ 24 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDR 24 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999999754
No 494
>PRK06217 hypothetical protein; Validated
Probab=88.99 E-value=0.4 Score=47.29 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g 44 (752)
.+|+|+|..|||||||+.+|-...|
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3599999999999999999976665
No 495
>PRK00625 shikimate kinase; Provisional
Probab=88.98 E-value=0.4 Score=46.90 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=21.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcC
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g 44 (752)
||.++|+.|+||||+...|-...|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999965554
No 496
>KOG2484 consensus GTPase [General function prediction only]
Probab=88.73 E-value=0.53 Score=51.01 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=28.3
Q ss_pred CHHHHHHhhccc------CCeeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 5 TAEGLRRIMDFK------HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 5 ~~~~~~~~~~~~------~~iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
..+-+..++.+. ++-..+||+|-++.|||+++++|.....
T Consensus 232 gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~ 277 (435)
T KOG2484|consen 232 GAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKA 277 (435)
T ss_pred hHHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhcc
Confidence 344555555432 2335699999999999999999975543
No 497
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=88.72 E-value=0.34 Score=47.89 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~ 43 (752)
.+++|+|+.|+|||||+..|....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999995443
No 498
>PRK13947 shikimate kinase; Provisional
Probab=88.71 E-value=0.41 Score=46.41 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g 44 (752)
.||.++|..|+||||++..|-...|
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999966554
No 499
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=88.69 E-value=0.38 Score=45.58 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcC
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g 44 (752)
||.++|.+|+||||++..|-...|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999976655
No 500
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=88.65 E-value=0.54 Score=42.73 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=18.3
Q ss_pred EEEEeCCCCChHHHHHHHHHH
Q 004467 22 MSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 22 i~iighvd~GKTTL~~~ll~~ 42 (752)
|++.|..|+||||++..|...
T Consensus 2 i~~~GkgG~GKTt~a~~la~~ 22 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARY 22 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999888543
Done!