Query 004467
Match_columns 752
No_of_seqs 281 out of 2254
Neff 8.1
Searched_HMMs 29240
Date Tue Mar 26 02:02:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004467.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004467hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n0u_A EF-2, elongation factor 100.0 4E-138 1E-142 1242.8 73.2 748 1-752 1-842 (842)
2 4fn5_A EF-G 1, elongation fact 100.0 2E-118 8E-123 1057.6 40.1 624 17-718 11-700 (709)
3 2rdo_7 EF-G, elongation factor 100.0 2E-108 8E-113 967.7 57.0 625 15-731 6-701 (704)
4 3j25_A Tetracycline resistance 100.0 1E-113 5E-118 1003.5 12.5 585 18-722 1-620 (638)
5 2xex_A Elongation factor G; GT 100.0 1E-106 4E-111 952.4 44.2 618 16-732 7-690 (693)
6 1dar_A EF-G, elongation factor 100.0 1E-106 4E-111 952.2 36.6 615 15-730 8-689 (691)
7 2dy1_A Elongation factor G; tr 100.0 1.4E-99 5E-104 889.5 47.0 594 16-733 6-662 (665)
8 3vqt_A RF-3, peptide chain rel 100.0 2.3E-76 8E-81 676.2 20.6 409 12-481 24-501 (548)
9 2ywe_A GTP-binding protein LEP 100.0 8.4E-74 2.9E-78 656.2 38.9 476 16-734 3-522 (600)
10 3cb4_D GTP-binding protein LEP 100.0 7.5E-72 2.6E-76 641.6 38.1 472 17-734 2-517 (599)
11 2h5e_A Peptide chain release f 100.0 6.2E-59 2.1E-63 530.0 20.3 403 15-479 9-476 (529)
12 3tr5_A RF-3, peptide chain rel 100.0 2.7E-58 9.4E-63 524.1 19.5 403 16-480 10-476 (528)
13 3e3x_A BIPA; MCSG,PSI2, struct 100.0 1.1E-38 3.8E-43 334.0 19.8 195 362-719 2-208 (332)
14 3j2k_7 ERF3, eukaryotic polype 100.0 3.6E-31 1.2E-35 296.1 18.8 277 16-380 14-327 (439)
15 2c78_A Elongation factor TU-A; 100.0 4.7E-29 1.6E-33 276.8 18.7 278 15-380 7-308 (405)
16 1jny_A EF-1-alpha, elongation 100.0 5.7E-30 2E-34 286.4 11.3 274 17-380 4-317 (435)
17 1d2e_A Elongation factor TU (E 100.0 1.7E-29 5.8E-34 279.4 13.0 276 18-380 2-290 (397)
18 1r5b_A Eukaryotic peptide chai 100.0 5.6E-30 1.9E-34 288.6 8.3 278 17-380 41-356 (467)
19 3p26_A Elongation factor 1 alp 100.0 7.3E-29 2.5E-33 281.2 12.7 289 10-380 24-362 (483)
20 3mca_A HBS1, elongation factor 100.0 7.5E-30 2.6E-34 294.6 4.6 260 16-380 174-489 (592)
21 1f60_A Elongation factor EEF1A 100.0 4.5E-28 1.5E-32 272.4 16.9 276 16-380 4-328 (458)
22 3izq_1 HBS1P, elongation facto 99.9 2E-28 6.7E-33 283.5 10.5 286 15-380 163-496 (611)
23 1zun_B Sulfate adenylate trans 99.9 3.3E-28 1.1E-32 272.2 11.4 286 8-380 11-326 (434)
24 3avx_A Elongation factor TS, e 99.9 3E-27 1E-31 281.4 14.4 277 16-380 293-581 (1289)
25 1g7s_A Translation initiation 99.9 2E-27 6.7E-32 273.4 10.3 331 18-420 4-373 (594)
26 2elf_A Protein translation elo 99.9 6.8E-27 2.3E-31 255.2 12.3 242 19-378 21-275 (370)
27 1kk1_A EIF2gamma; initiation o 99.9 2.8E-26 9.7E-31 254.8 16.2 268 17-380 8-316 (410)
28 1s0u_A EIF-2-gamma, translatio 99.9 6.7E-25 2.3E-29 243.5 16.9 268 17-380 6-314 (408)
29 1wb1_A Translation elongation 99.9 3.8E-26 1.3E-30 258.0 2.4 246 17-376 17-280 (482)
30 3sjy_A Translation initiation 99.9 3E-23 1E-27 229.8 12.5 268 17-380 6-308 (403)
31 1zo1_I IF2, translation initia 99.9 3.3E-25 1.1E-29 248.9 -3.4 289 17-429 2-333 (501)
32 3izy_P Translation initiation 99.9 2.7E-23 9.4E-28 235.2 -1.3 240 18-380 3-259 (537)
33 1wf3_A GTP-binding protein; GT 99.3 1.1E-12 3.6E-17 139.1 5.0 107 17-154 5-128 (301)
34 2xtp_A GTPase IMAP family memb 99.3 2.6E-12 8.8E-17 133.2 5.0 108 17-154 20-150 (260)
35 3qq5_A Small GTP-binding prote 99.2 2.2E-12 7.4E-17 142.5 0.0 108 17-154 32-151 (423)
36 3iev_A GTP-binding protein ERA 99.2 1.3E-11 4.5E-16 131.2 4.8 109 16-154 7-133 (308)
37 3k53_A Ferrous iron transport 99.2 1.2E-11 4.1E-16 129.0 4.3 105 18-154 2-120 (271)
38 1ega_A Protein (GTP-binding pr 99.1 2.3E-12 7.8E-17 136.7 -1.7 105 18-154 7-127 (301)
39 2lkc_A Translation initiation 99.1 6.9E-12 2.3E-16 121.2 -0.7 107 16-154 5-118 (178)
40 3iby_A Ferrous iron transport 99.1 3.6E-11 1.2E-15 124.3 4.4 104 19-154 1-121 (256)
41 2hjg_A GTP-binding protein ENG 99.1 1.3E-11 4.5E-16 137.7 0.6 106 18-154 174-297 (436)
42 2dyk_A GTP-binding protein; GT 99.1 4.1E-11 1.4E-15 113.6 3.9 105 19-154 1-119 (161)
43 3i8s_A Ferrous iron transport 99.1 6.7E-11 2.3E-15 123.6 5.3 104 19-154 3-123 (274)
44 3lxw_A GTPase IMAP family memb 99.1 5.7E-11 1.9E-15 122.2 4.5 107 17-154 19-150 (247)
45 3tw8_B RAS-related protein RAB 99.1 2.7E-11 9.2E-16 117.1 1.6 113 12-154 2-124 (181)
46 2fn4_A P23, RAS-related protei 99.0 1.4E-10 4.8E-15 112.0 6.3 109 14-154 4-125 (181)
47 3tkl_A RAS-related protein RAB 99.0 1E-10 3.5E-15 114.9 5.3 113 12-154 9-132 (196)
48 1z0f_A RAB14, member RAS oncog 99.0 8.1E-11 2.8E-15 113.5 4.4 109 16-154 12-131 (179)
49 2bme_A RAB4A, RAS-related prot 99.0 9.5E-11 3.2E-15 114.1 4.4 110 15-154 6-126 (186)
50 2p5s_A RAS and EF-hand domain 99.0 1.5E-10 5E-15 114.5 5.8 108 17-154 26-144 (199)
51 3a1s_A Iron(II) transport prot 99.0 1.1E-10 3.6E-15 120.9 4.7 106 17-154 3-121 (258)
52 2y8e_A RAB-protein 6, GH09086P 99.0 1.7E-10 5.7E-15 111.3 5.3 111 14-154 9-130 (179)
53 1vg8_A RAS-related protein RAB 99.0 1E-10 3.5E-15 116.1 3.6 110 15-154 4-128 (207)
54 2il1_A RAB12; G-protein, GDP, 99.0 2.3E-10 8E-15 112.5 6.1 108 17-154 24-142 (192)
55 2efe_B Small GTP-binding prote 99.0 1.3E-10 4.5E-15 112.4 4.1 108 17-154 10-128 (181)
56 1u8z_A RAS-related protein RAL 99.0 3.8E-10 1.3E-14 107.2 7.3 105 18-154 3-120 (168)
57 2a9k_A RAS-related protein RAL 99.0 4E-10 1.4E-14 109.4 7.3 110 13-154 12-134 (187)
58 3clv_A RAB5 protein, putative; 99.0 3.4E-10 1.2E-14 111.4 6.9 57 98-154 93-158 (208)
59 1mky_A Probable GTP-binding pr 99.0 1.4E-10 4.9E-15 129.4 4.4 104 20-154 2-121 (439)
60 1r2q_A RAS-related protein RAB 99.0 1.8E-10 6.1E-15 109.9 4.4 107 18-154 5-122 (170)
61 3def_A T7I23.11 protein; chlor 99.0 1.5E-10 5.2E-15 120.0 4.1 107 17-154 34-162 (262)
62 2oil_A CATX-8, RAS-related pro 99.0 1.8E-10 6.2E-15 113.0 4.3 110 15-154 21-141 (193)
63 1ek0_A Protein (GTP-binding pr 99.0 2.2E-10 7.6E-15 109.3 4.8 106 19-154 3-119 (170)
64 1ky3_A GTP-binding protein YPT 99.0 1.2E-10 4.3E-15 112.5 3.1 111 15-154 4-129 (182)
65 1kao_A RAP2A; GTP-binding prot 99.0 5.3E-10 1.8E-14 106.1 7.2 104 19-154 3-119 (167)
66 1zd9_A ADP-ribosylation factor 99.0 1.8E-10 6.2E-15 112.8 4.0 104 17-154 20-135 (188)
67 4dhe_A Probable GTP-binding pr 99.0 4.2E-11 1.4E-15 120.5 -0.6 109 17-154 27-155 (223)
68 1wms_A RAB-9, RAB9, RAS-relate 99.0 2E-10 6.9E-15 110.7 4.2 109 16-154 4-127 (177)
69 3kkq_A RAS-related protein M-R 99.0 3.6E-10 1.2E-14 109.7 6.0 107 17-154 16-134 (183)
70 2erx_A GTP-binding protein DI- 99.0 7.5E-10 2.6E-14 105.7 8.0 105 19-154 3-120 (172)
71 2ew1_A RAS-related protein RAB 99.0 2.1E-10 7E-15 114.1 4.2 113 12-154 19-142 (201)
72 4bas_A ADP-ribosylation factor 99.0 1.8E-10 6.1E-15 113.4 3.6 106 16-154 14-138 (199)
73 1z2a_A RAS-related protein RAB 99.0 3.7E-10 1.3E-14 107.6 5.6 108 17-154 3-120 (168)
74 2g6b_A RAS-related protein RAB 99.0 2.2E-10 7.5E-15 110.8 3.7 110 16-154 7-127 (180)
75 2gf9_A RAS-related protein RAB 99.0 1.5E-10 5.2E-15 113.3 2.6 108 17-154 20-138 (189)
76 1g16_A RAS-related protein SEC 99.0 1.8E-10 6.2E-15 110.0 3.0 107 18-154 2-119 (170)
77 1r8s_A ADP-ribosylation factor 98.9 5.5E-10 1.9E-14 106.1 6.0 99 21-154 2-112 (164)
78 2fg5_A RAB-22B, RAS-related pr 98.9 2.7E-10 9.2E-15 112.0 3.9 108 17-154 21-139 (192)
79 3bc1_A RAS-related protein RAB 98.9 7.8E-10 2.7E-14 107.9 7.1 118 16-154 8-138 (195)
80 1upt_A ARL1, ADP-ribosylation 98.9 2E-10 6.8E-15 109.9 2.7 103 17-154 5-119 (171)
81 1z06_A RAS-related protein RAB 98.9 2.4E-10 8.2E-15 111.9 3.2 108 17-154 18-138 (189)
82 4dcu_A GTP-binding protein ENG 98.9 2E-10 6.9E-15 128.9 2.8 107 17-154 193-317 (456)
83 2fu5_C RAS-related protein RAB 98.9 1.2E-10 4.2E-15 113.1 0.9 108 17-154 6-124 (183)
84 1zbd_A Rabphilin-3A; G protein 98.9 3.5E-10 1.2E-14 112.0 4.1 108 17-154 6-124 (203)
85 2ce2_X GTPase HRAS; signaling 98.9 1.1E-09 3.8E-14 103.6 7.5 103 20-154 4-119 (166)
86 3cph_A RAS-related protein SEC 98.9 4.2E-10 1.4E-14 112.1 4.7 108 17-154 18-136 (213)
87 2bov_A RAla, RAS-related prote 98.9 9.5E-10 3.2E-14 108.8 7.0 106 17-154 12-130 (206)
88 2fh5_B SR-beta, signal recogni 98.9 6.6E-10 2.3E-14 111.0 5.9 107 16-154 4-126 (214)
89 2wji_A Ferrous iron transport 98.9 1.1E-09 3.8E-14 104.8 7.2 104 19-154 3-119 (165)
90 1c1y_A RAS-related protein RAP 98.9 6.8E-10 2.3E-14 105.6 5.7 105 19-154 3-119 (167)
91 2hxs_A RAB-26, RAS-related pro 98.9 9.4E-10 3.2E-14 106.0 6.7 109 17-154 4-126 (178)
92 2wjg_A FEOB, ferrous iron tran 98.9 9.3E-10 3.2E-14 107.3 6.7 106 17-154 5-123 (188)
93 2gf0_A GTP-binding protein DI- 98.9 1.4E-09 4.7E-14 107.0 7.8 108 16-154 5-125 (199)
94 2hup_A RAS-related protein RAB 98.9 9.4E-10 3.2E-14 109.1 6.4 108 17-154 27-145 (201)
95 1fzq_A ADP-ribosylation factor 98.9 6.7E-10 2.3E-14 108.1 5.2 111 9-154 6-128 (181)
96 2bcg_Y Protein YP2, GTP-bindin 98.9 2.5E-10 8.7E-15 113.3 2.2 109 16-154 5-124 (206)
97 1f6b_A SAR1; gtpases, N-termin 98.9 2.4E-10 8.1E-15 113.2 1.8 103 17-154 23-137 (198)
98 2h57_A ADP-ribosylation factor 98.9 2.7E-10 9.4E-15 111.5 2.2 105 17-154 19-137 (190)
99 1jwy_B Dynamin A GTPase domain 98.9 3.2E-10 1.1E-14 120.7 2.9 59 97-155 130-210 (315)
100 4dsu_A GTPase KRAS, isoform 2B 98.9 6.5E-10 2.2E-14 108.2 4.8 105 19-154 4-120 (189)
101 2o52_A RAS-related protein RAB 98.9 3.6E-10 1.2E-14 112.0 2.9 109 16-154 22-141 (200)
102 4dcu_A GTP-binding protein ENG 98.9 7.1E-11 2.4E-15 132.6 -2.5 107 17-154 21-142 (456)
103 1z0j_A RAB-22, RAS-related pro 98.9 3.4E-10 1.2E-14 108.1 2.7 107 18-154 5-122 (170)
104 1x3s_A RAS-related protein RAB 98.9 1.3E-10 4.6E-15 113.8 -0.2 108 17-154 13-132 (195)
105 2hjg_A GTP-binding protein ENG 98.9 9E-11 3.1E-15 131.0 -1.6 104 20-154 4-122 (436)
106 2a5j_A RAS-related protein RAB 98.9 3.8E-10 1.3E-14 110.7 3.0 108 17-154 19-137 (191)
107 1z08_A RAS-related protein RAB 98.9 5.6E-10 1.9E-14 106.7 4.1 108 17-154 4-122 (170)
108 1ksh_A ARF-like protein 2; sma 98.9 2.3E-10 7.8E-15 111.6 1.3 103 17-154 16-130 (186)
109 3lxx_A GTPase IMAP family memb 98.9 3.9E-10 1.3E-14 115.1 2.4 109 16-154 26-156 (239)
110 1mh1_A RAC1; GTP-binding, GTPa 98.9 8.2E-10 2.8E-14 107.2 4.6 104 19-154 5-120 (186)
111 2b6h_A ADP-ribosylation factor 98.9 7.2E-10 2.5E-14 109.0 4.2 103 17-154 27-141 (192)
112 3t1o_A Gliding protein MGLA; G 98.9 2.9E-10 9.8E-15 111.5 1.2 118 17-154 12-146 (198)
113 3l0i_B RAS-related protein RAB 98.9 6.5E-11 2.2E-15 117.1 -3.5 108 17-154 31-149 (199)
114 1m2o_B GTP-binding protein SAR 98.9 3.2E-10 1.1E-14 111.4 1.3 103 17-154 21-135 (190)
115 3llu_A RAS-related GTP-binding 98.9 7.7E-10 2.6E-14 109.1 4.1 109 16-154 17-140 (196)
116 1zj6_A ADP-ribosylation factor 98.9 4E-10 1.4E-14 110.0 2.0 103 17-154 14-128 (187)
117 4gzl_A RAS-related C3 botulinu 98.9 8.2E-10 2.8E-14 109.8 4.2 107 17-154 28-145 (204)
118 3t5g_A GTP-binding protein RHE 98.9 4.7E-10 1.6E-14 108.7 2.1 106 18-154 5-122 (181)
119 3dz8_A RAS-related protein RAB 98.9 4E-10 1.4E-14 110.5 1.2 108 17-154 21-139 (191)
120 1h65_A Chloroplast outer envel 98.8 1.9E-09 6.4E-14 112.3 6.1 107 17-154 37-165 (270)
121 3con_A GTPase NRAS; structural 98.8 1.3E-09 4.4E-14 106.5 4.5 104 19-154 21-137 (190)
122 3reg_A RHO-like small GTPase; 98.8 9.6E-10 3.3E-14 108.0 3.6 107 16-154 20-138 (194)
123 3oes_A GTPase rhebl1; small GT 98.8 7.5E-10 2.6E-14 109.6 2.8 107 17-154 22-140 (201)
124 2f7s_A C25KG, RAS-related prot 98.8 8.4E-10 2.9E-14 110.5 2.7 119 16-154 22-152 (217)
125 2gj8_A MNME, tRNA modification 98.8 2.7E-09 9.4E-14 102.9 6.3 104 20-154 5-126 (172)
126 3b1v_A Ferrous iron uptake tra 98.8 1.2E-09 4.1E-14 113.8 3.9 103 19-154 3-118 (272)
127 2nzj_A GTP-binding protein REM 98.8 1.2E-09 4.1E-14 104.8 3.6 106 18-154 3-122 (175)
128 3cpj_B GTP-binding protein YPT 98.8 7.3E-10 2.5E-14 111.7 2.0 109 16-154 10-129 (223)
129 4djt_A GTP-binding nuclear pro 98.8 5.6E-10 1.9E-14 111.9 0.8 113 13-154 5-128 (218)
130 1svi_A GTP-binding protein YSX 98.8 1E-09 3.5E-14 107.6 2.7 105 17-154 21-145 (195)
131 2atx_A Small GTP binding prote 98.8 1.7E-09 5.9E-14 106.1 4.3 105 18-154 17-133 (194)
132 3gj0_A GTP-binding nuclear pro 98.8 1E-09 3.5E-14 110.3 2.7 109 16-154 12-130 (221)
133 2gco_A H9, RHO-related GTP-bin 98.8 2.3E-09 7.8E-14 106.1 5.0 105 18-154 24-140 (201)
134 3pqc_A Probable GTP-binding pr 98.8 1.1E-09 3.8E-14 107.1 2.7 104 17-154 21-144 (195)
135 2h17_A ADP-ribosylation factor 98.8 4.7E-10 1.6E-14 109.0 -0.0 103 17-154 19-133 (181)
136 2j0v_A RAC-like GTP-binding pr 98.8 3.2E-09 1.1E-13 105.8 5.7 107 17-154 7-124 (212)
137 2x77_A ADP-ribosylation factor 98.8 3.6E-10 1.2E-14 110.5 -1.2 103 17-154 20-134 (189)
138 2atv_A RERG, RAS-like estrogen 98.8 5.1E-09 1.7E-13 103.0 7.0 105 17-154 26-143 (196)
139 2fv8_A H6, RHO-related GTP-bin 98.8 2.1E-09 7.2E-14 106.9 4.2 105 18-154 24-140 (207)
140 3q85_A GTP-binding protein REM 98.8 3.1E-09 1.1E-13 101.4 4.8 106 19-154 2-120 (169)
141 3th5_A RAS-related C3 botulinu 98.3 6.7E-10 2.3E-14 110.1 0.0 107 17-154 28-145 (204)
142 1moz_A ARL1, ADP-ribosylation 98.8 4.5E-10 1.5E-14 108.9 -1.7 103 17-154 16-130 (183)
143 3bwd_D RAC-like GTP-binding pr 98.8 9.7E-10 3.3E-14 106.3 0.7 106 18-154 7-123 (182)
144 3o47_A ADP-ribosylation factor 98.8 1.6E-09 5.5E-14 116.2 2.4 100 20-154 166-277 (329)
145 2j1l_A RHO-related GTP-binding 98.8 4.7E-09 1.6E-13 105.0 5.3 105 18-154 33-149 (214)
146 3geh_A MNME, tRNA modification 98.8 1.3E-09 4.3E-14 121.9 1.1 103 21-154 226-341 (462)
147 3q72_A GTP-binding protein RAD 98.7 2.1E-09 7.4E-14 102.2 2.2 104 19-154 2-117 (166)
148 2yc2_C IFT27, small RAB-relate 98.7 1E-09 3.5E-14 108.6 -0.1 107 18-154 19-143 (208)
149 3r7w_A Gtpase1, GTP-binding pr 98.7 3E-09 1E-13 112.9 3.5 106 19-154 3-126 (307)
150 1nrj_B SR-beta, signal recogni 98.7 4.3E-09 1.5E-13 105.4 4.0 102 17-154 10-131 (218)
151 1m7b_A RND3/RHOE small GTP-bin 98.7 5E-09 1.7E-13 101.9 4.3 107 17-154 5-122 (184)
152 1mky_A Probable GTP-binding pr 98.7 4.1E-09 1.4E-13 117.6 3.7 106 18-154 179-303 (439)
153 3t5d_A Septin-7; GTP-binding p 98.7 6.4E-09 2.2E-13 108.5 4.9 114 19-154 8-155 (274)
154 2q3h_A RAS homolog gene family 98.7 4.2E-09 1.5E-13 103.9 3.4 106 17-154 18-135 (201)
155 2ged_A SR-beta, signal recogni 98.7 2.5E-09 8.4E-14 104.8 1.4 102 17-154 46-167 (193)
156 3gee_A MNME, tRNA modification 98.7 1.4E-09 4.7E-14 122.1 -0.6 105 20-155 234-355 (476)
157 2qpt_A EH domain-containing pr 98.7 2.1E-09 7.2E-14 122.9 0.5 57 98-154 154-229 (550)
158 3c5c_A RAS-like protein 12; GD 98.7 1.3E-08 4.6E-13 99.3 6.0 105 17-154 19-138 (187)
159 1gwn_A RHO-related GTP-binding 98.7 8.6E-09 3E-13 102.5 4.5 108 16-154 25-143 (205)
160 2aka_B Dynamin-1; fusion prote 98.7 7.3E-09 2.5E-13 109.1 4.1 58 97-154 124-203 (299)
161 2qu8_A Putative nucleolar GTP- 98.7 7E-09 2.4E-13 104.9 3.8 106 17-154 27-153 (228)
162 1xzp_A Probable tRNA modificat 98.6 8.8E-09 3E-13 115.6 2.2 105 20-155 244-362 (482)
163 3lvq_E ARF-GAP with SH3 domain 98.6 1.2E-08 3.9E-13 115.9 2.7 103 17-154 320-434 (497)
164 3q3j_B RHO-related GTP-binding 98.6 1.8E-08 6E-13 100.9 3.4 105 18-154 26-142 (214)
165 2wkq_A NPH1-1, RAS-related C3 98.6 3.1E-08 1E-12 105.7 4.9 106 17-154 153-270 (332)
166 3cbq_A GTP-binding protein REM 98.6 4.6E-08 1.6E-12 96.3 5.7 108 17-154 21-141 (195)
167 3ihw_A Centg3; RAS, centaurin, 98.6 5.7E-08 1.9E-12 94.7 6.2 101 17-154 18-130 (184)
168 2j37_W Signal recognition part 98.6 7.4E-09 2.5E-13 116.3 -0.3 131 17-156 99-253 (504)
169 2iwr_A Centaurin gamma 1; ANK 98.5 5.1E-08 1.7E-12 93.9 5.2 99 18-154 6-119 (178)
170 2cxx_A Probable GTP-binding pr 98.5 4.8E-08 1.6E-12 94.9 3.9 99 20-154 2-133 (190)
171 2p67_A LAO/AO transport system 98.5 1.2E-08 4E-13 109.9 -0.8 58 96-156 147-207 (341)
172 3dpu_A RAB family protein; roc 98.5 1E-07 3.5E-12 109.1 6.1 118 16-155 38-162 (535)
173 2j69_A Bacterial dynamin-like 98.5 4.1E-08 1.4E-12 115.4 2.5 57 98-154 174-241 (695)
174 1lnz_A SPO0B-associated GTP-bi 98.4 3.2E-08 1.1E-12 106.3 0.7 105 19-154 158-285 (342)
175 2qtf_A Protein HFLX, GTP-bindi 98.4 1.6E-07 5.4E-12 101.8 5.9 105 18-154 178-303 (364)
176 2e87_A Hypothetical protein PH 98.4 1.8E-07 6.3E-12 101.2 5.5 106 17-154 165-291 (357)
177 4a9a_A Ribosome-interacting GT 98.4 1.6E-07 5.5E-12 101.6 4.2 103 20-154 73-193 (376)
178 2f9l_A RAB11B, member RAS onco 98.4 1.3E-07 4.3E-12 93.3 3.1 89 18-136 4-92 (199)
179 3t34_A Dynamin-related protein 98.4 1.9E-07 6.4E-12 101.3 4.6 58 97-154 135-214 (360)
180 2x2e_A Dynamin-1; nitration, h 98.3 1.4E-07 4.7E-12 102.1 2.4 59 97-155 129-209 (353)
181 2zej_A Dardarin, leucine-rich 98.3 1.6E-07 5.5E-12 91.3 2.1 110 20-154 3-123 (184)
182 3p32_A Probable GTPase RV1496/ 98.3 4.5E-08 1.5E-12 106.0 -2.2 58 96-156 170-230 (355)
183 2qag_A Septin-2, protein NEDD5 98.3 7.9E-08 2.7E-12 104.2 -0.6 116 18-154 36-185 (361)
184 2wsm_A Hydrogenase expression/ 98.3 8.5E-08 2.9E-12 96.1 -1.0 129 16-154 27-165 (221)
185 1pui_A ENGB, probable GTP-bind 98.2 3E-07 1E-11 91.1 2.8 105 17-154 24-148 (210)
186 4dkx_A RAS-related protein RAB 98.2 7.3E-07 2.5E-11 89.4 4.8 107 18-154 12-129 (216)
187 3e1y_E Eukaryotic peptide chai 98.1 3.4E-06 1.2E-10 83.6 7.9 84 281-380 3-89 (204)
188 1jal_A YCHF protein; nucleotid 98.1 2.5E-06 8.6E-11 91.7 7.4 99 20-134 3-109 (363)
189 1oix_A RAS-related protein RAB 98.1 8.9E-07 3E-11 86.7 3.3 89 17-135 27-115 (191)
190 2cjw_A GTP-binding protein GEM 98.1 2.2E-06 7.5E-11 83.9 5.3 108 18-154 5-125 (192)
191 3zvr_A Dynamin-1; hydrolase, D 98.1 1.4E-06 4.8E-11 101.9 4.0 58 97-154 149-228 (772)
192 2g3y_A GTP-binding protein GEM 98.1 1.7E-06 5.7E-11 86.4 3.5 109 17-154 35-156 (211)
193 1wxq_A GTP-binding protein; st 98.0 2.3E-06 7.9E-11 93.7 4.4 98 21-134 2-114 (397)
194 2dby_A GTP-binding protein; GD 98.0 1.6E-05 5.3E-10 86.0 9.8 98 20-135 2-113 (368)
195 2www_A Methylmalonic aciduria 97.9 2.2E-06 7.4E-11 92.4 2.2 58 96-156 165-225 (349)
196 2ohf_A Protein OLA1, GTP-bindi 97.9 9.8E-06 3.4E-10 88.0 6.9 107 12-134 15-129 (396)
197 1yrb_A ATP(GTP)binding protein 97.9 2.1E-06 7.3E-11 88.2 0.9 57 97-154 108-182 (262)
198 2xxa_A Signal recognition part 97.9 2.6E-06 9E-11 94.2 1.3 132 18-156 99-253 (433)
199 2v3c_C SRP54, signal recogniti 97.8 7.4E-06 2.5E-10 90.5 4.1 132 19-156 99-251 (432)
200 3kl4_A SRP54, signal recogniti 97.8 5.9E-06 2E-10 90.9 1.6 132 19-157 97-252 (433)
201 1udx_A The GTP-binding protein 97.8 7E-06 2.4E-10 90.1 2.2 105 19-154 157-280 (416)
202 1ni3_A YCHF GTPase, YCHF GTP-b 97.7 6.8E-05 2.3E-09 81.5 9.5 106 13-133 14-127 (392)
203 3r7w_B Gtpase2, GTP-binding pr 97.7 9.3E-06 3.2E-10 85.8 2.1 102 22-155 2-118 (331)
204 1f5n_A Interferon-induced guan 97.6 8.2E-05 2.8E-09 84.9 7.6 105 6-136 25-135 (592)
205 3ec1_A YQEH GTPase; atnos1, at 97.5 3.5E-06 1.2E-10 91.4 -4.3 107 19-154 162-285 (369)
206 1j8m_F SRP54, signal recogniti 97.5 1.8E-05 6.3E-10 83.1 0.7 129 19-154 98-250 (297)
207 3h2y_A GTPase family protein; 97.4 8.8E-06 3E-10 88.2 -3.2 107 19-154 160-284 (368)
208 3dm5_A SRP54, signal recogniti 97.3 0.00018 6E-09 79.2 5.6 132 19-158 100-254 (443)
209 3c5h_A Glucocorticoid receptor 97.2 2E-05 6.9E-10 80.9 -3.2 25 17-41 17-50 (255)
210 2qm8_A GTPase/ATPase; G protei 97.1 0.00017 5.8E-09 77.1 2.5 56 96-154 146-204 (337)
211 2hf9_A Probable hydrogenase ni 97.0 0.00018 6E-09 71.9 1.4 127 17-154 36-175 (226)
212 3sop_A Neuronal-specific septi 96.9 0.00031 1.1E-08 72.6 2.7 24 20-43 3-26 (270)
213 2qag_C Septin-7; cell cycle, c 96.8 0.0002 6.9E-09 78.6 0.5 21 20-40 32-52 (418)
214 1puj_A YLQF, conserved hypothe 96.8 0.0011 3.6E-08 69.0 5.3 24 18-41 119-142 (282)
215 2qag_B Septin-6, protein NEDD5 96.8 0.00032 1.1E-08 76.8 1.3 24 18-41 41-64 (427)
216 2yhs_A FTSY, cell division pro 96.6 0.00073 2.5E-08 75.1 2.9 24 19-42 293-316 (503)
217 3cnl_A YLQF, putative uncharac 96.4 0.0017 5.6E-08 66.8 3.8 21 20-40 100-120 (262)
218 2cve_A Hypothetical protein TT 96.4 0.0064 2.2E-07 58.4 7.5 110 588-704 80-190 (191)
219 3q5d_A Atlastin-1; G protein, 96.3 0.017 5.9E-07 63.6 11.3 39 4-42 48-90 (447)
220 1rj9_A FTSY, signal recognitio 96.2 0.0008 2.7E-08 70.7 0.2 25 18-42 101-125 (304)
221 1vi7_A Hypothetical protein YI 96.2 0.0076 2.6E-07 59.2 7.1 112 588-705 92-203 (217)
222 3e70_C DPA, signal recognition 96.1 0.0021 7.1E-08 68.2 2.8 131 18-155 128-280 (328)
223 1zu4_A FTSY; GTPase, signal re 96.1 0.003 1E-07 66.8 4.0 25 18-42 104-128 (320)
224 2px0_A Flagellar biosynthesis 95.8 0.015 5.2E-07 60.6 7.8 105 18-136 104-227 (296)
225 2qnr_A Septin-2, protein NEDD5 95.6 0.014 4.8E-07 61.0 6.5 21 20-40 19-39 (301)
226 1vma_A Cell division protein F 95.6 0.014 4.8E-07 61.2 6.3 25 18-42 103-127 (306)
227 3szr_A Interferon-induced GTP- 95.5 0.0061 2.1E-07 70.3 3.6 22 19-40 45-66 (608)
228 1tq4_A IIGP1, interferon-induc 95.3 0.011 3.7E-07 64.6 4.3 23 19-41 69-91 (413)
229 2ffh_A Protein (FFH); SRP54, s 95.2 0.0093 3.2E-07 65.4 3.4 132 18-156 97-250 (425)
230 4dzz_A Plasmid partitioning pr 94.8 0.02 7E-07 55.6 4.4 36 97-134 75-110 (206)
231 1ls1_A Signal recognition part 94.6 0.013 4.3E-07 61.3 2.4 25 18-42 97-121 (295)
232 1xe1_A Hypothetical protein PF 94.3 0.15 5.2E-06 44.5 8.1 65 283-364 33-97 (116)
233 1t9h_A YLOQ, probable GTPase E 94.2 0.021 7.1E-07 59.8 3.1 21 20-40 174-194 (307)
234 3cwq_A Para family chromosome 93.9 0.0078 2.7E-07 59.4 -0.8 36 97-134 67-103 (209)
235 2yv5_A YJEQ protein; hydrolase 93.8 0.073 2.5E-06 55.6 6.4 21 20-40 166-186 (302)
236 4eun_A Thermoresistant glucoki 92.8 0.063 2.2E-06 52.2 3.7 38 8-46 19-56 (200)
237 4ido_A Atlastin-1; GTPase, GTP 92.5 0.31 1.1E-05 53.4 9.0 39 4-42 48-90 (457)
238 1zp6_A Hypothetical protein AT 92.5 0.072 2.5E-06 51.0 3.6 25 16-40 6-30 (191)
239 1ye8_A Protein THEP1, hypothet 92.4 0.075 2.6E-06 50.9 3.5 24 21-44 2-25 (178)
240 3a00_A Guanylate kinase, GMP k 92.4 0.057 1.9E-06 51.9 2.7 23 20-42 2-24 (186)
241 1lvg_A Guanylate kinase, GMP k 92.3 0.059 2E-06 52.4 2.8 24 19-42 4-27 (198)
242 1knq_A Gluconate kinase; ALFA/ 92.2 0.099 3.4E-06 49.3 4.1 28 18-45 7-34 (175)
243 1kgd_A CASK, peripheral plasma 92.2 0.089 3E-06 50.2 3.8 25 19-43 5-29 (180)
244 1u0l_A Probable GTPase ENGC; p 91.9 0.12 4.2E-06 53.8 4.8 21 20-40 170-190 (301)
245 3c8u_A Fructokinase; YP_612366 91.7 0.15 5.2E-06 49.8 5.0 26 17-42 20-45 (208)
246 3lh2_S 4E10_1VI7A_S0_002_N (T8 91.7 0.095 3.3E-06 42.5 2.9 63 639-704 8-70 (76)
247 3kb2_A SPBC2 prophage-derived 91.6 0.11 3.6E-06 48.7 3.5 25 20-44 2-26 (173)
248 4g1u_C Hemin import ATP-bindin 91.5 0.15 5.1E-06 52.2 4.7 30 20-53 38-67 (266)
249 3t61_A Gluconokinase; PSI-biol 91.5 0.11 3.8E-06 50.3 3.6 27 19-45 18-44 (202)
250 3tr0_A Guanylate kinase, GMP k 91.4 0.11 3.8E-06 50.3 3.6 25 19-43 7-31 (205)
251 1xjc_A MOBB protein homolog; s 91.4 0.11 3.9E-06 49.1 3.5 25 18-42 3-27 (169)
252 1cip_A Protein (guanine nucleo 91.4 0.024 8.3E-07 60.6 -1.4 58 97-154 192-271 (353)
253 1kag_A SKI, shikimate kinase I 91.3 0.11 3.8E-06 48.8 3.3 25 20-44 5-29 (173)
254 3lw7_A Adenylate kinase relate 91.2 0.13 4.3E-06 48.1 3.7 24 20-44 2-25 (179)
255 1znw_A Guanylate kinase, GMP k 91.1 0.11 3.8E-06 50.7 3.2 27 17-43 18-44 (207)
256 3asz_A Uridine kinase; cytidin 91.0 0.13 4.3E-06 50.2 3.5 25 18-42 5-29 (211)
257 1zcb_A G alpha I/13; GTP-bindi 91.0 0.02 6.8E-07 61.5 -2.5 58 97-154 200-279 (362)
258 2bbw_A Adenylate kinase 4, AK4 91.0 0.14 4.9E-06 51.4 4.0 29 19-47 27-55 (246)
259 3end_A Light-independent proto 90.9 0.15 5E-06 53.2 4.1 38 96-134 155-192 (307)
260 1uf9_A TT1252 protein; P-loop, 90.8 0.17 5.9E-06 48.7 4.3 26 17-42 6-31 (203)
261 1np6_A Molybdopterin-guanine d 90.7 0.15 5.3E-06 48.5 3.7 25 18-42 5-29 (174)
262 2c95_A Adenylate kinase 1; tra 90.7 0.18 6E-06 48.3 4.2 27 18-44 8-34 (196)
263 1htw_A HI0065; nucleotide-bind 90.6 0.14 4.8E-06 47.9 3.2 27 17-43 31-57 (158)
264 3tau_A Guanylate kinase, GMP k 90.5 0.15 5.2E-06 49.8 3.6 26 18-43 7-32 (208)
265 1z6g_A Guanylate kinase; struc 90.3 0.13 4.6E-06 50.7 3.0 26 18-43 22-47 (218)
266 3ney_A 55 kDa erythrocyte memb 90.3 0.18 6.2E-06 49.0 3.9 27 17-43 17-43 (197)
267 1zd8_A GTP:AMP phosphotransfer 90.3 0.18 6.1E-06 49.9 3.9 28 17-44 5-32 (227)
268 2j41_A Guanylate kinase; GMP, 90.2 0.15 5.2E-06 49.3 3.3 24 19-42 6-29 (207)
269 1s96_A Guanylate kinase, GMP k 90.2 0.17 5.7E-06 50.2 3.6 26 18-43 15-40 (219)
270 4gp7_A Metallophosphoesterase; 90.2 0.14 4.8E-06 48.4 2.9 21 19-39 9-29 (171)
271 3vaa_A Shikimate kinase, SK; s 90.0 0.19 6.6E-06 48.6 3.8 28 17-44 23-50 (199)
272 1ukz_A Uridylate kinase; trans 90.0 0.23 7.9E-06 48.0 4.4 29 16-44 12-40 (203)
273 2bdt_A BH3686; alpha-beta prot 90.0 0.2 6.8E-06 47.9 3.9 22 20-41 3-24 (189)
274 1mv5_A LMRA, multidrug resista 89.9 0.2 6.8E-06 50.4 4.0 31 19-53 28-58 (243)
275 2qt1_A Nicotinamide riboside k 89.9 0.19 6.4E-06 48.9 3.7 28 14-41 16-43 (207)
276 1jjv_A Dephospho-COA kinase; P 89.8 0.17 5.8E-06 49.1 3.3 22 20-41 3-24 (206)
277 2f1r_A Molybdopterin-guanine d 89.7 0.11 3.7E-06 49.4 1.7 23 20-42 3-25 (171)
278 3trf_A Shikimate kinase, SK; a 89.7 0.2 7E-06 47.5 3.7 26 19-44 5-30 (185)
279 3lnc_A Guanylate kinase, GMP k 89.7 0.11 3.8E-06 51.6 1.8 22 19-40 27-48 (231)
280 1ex7_A Guanylate kinase; subst 89.6 0.18 6.1E-06 48.6 3.1 24 20-43 2-25 (186)
281 2if2_A Dephospho-COA kinase; a 89.5 0.18 6.1E-06 48.8 3.2 22 20-41 2-23 (204)
282 2pcj_A ABC transporter, lipopr 89.4 0.19 6.5E-06 49.9 3.3 25 20-47 31-55 (224)
283 3tif_A Uncharacterized ABC tra 89.3 0.18 6.2E-06 50.5 3.1 26 19-47 31-56 (235)
284 2bwj_A Adenylate kinase 5; pho 89.2 0.12 4.1E-06 49.7 1.6 26 19-44 12-37 (199)
285 2jeo_A Uridine-cytidine kinase 89.2 0.24 8.1E-06 49.7 3.9 29 17-45 23-51 (245)
286 1cke_A CK, MSSA, protein (cyti 89.2 0.23 7.7E-06 48.9 3.7 25 20-44 6-30 (227)
287 2qor_A Guanylate kinase; phosp 89.0 0.2 6.9E-06 48.6 3.1 26 18-43 11-36 (204)
288 1ly1_A Polynucleotide kinase; 88.9 0.22 7.5E-06 46.8 3.2 22 20-41 3-24 (181)
289 1uj2_A Uridine-cytidine kinase 88.8 0.27 9.3E-06 49.5 4.0 28 17-44 20-47 (252)
290 3aez_A Pantothenate kinase; tr 88.8 0.27 9.3E-06 51.5 4.1 27 16-42 87-113 (312)
291 3tlx_A Adenylate kinase 2; str 88.8 0.37 1.3E-05 48.3 5.0 29 17-45 27-55 (243)
292 3tqc_A Pantothenate kinase; bi 88.8 0.24 8.4E-06 52.0 3.7 28 17-44 90-117 (321)
293 3ec2_A DNA replication protein 88.7 0.22 7.4E-06 47.2 3.0 25 18-42 37-61 (180)
294 2v9p_A Replication protein E1; 88.6 0.28 9.7E-06 51.1 4.0 28 15-42 122-149 (305)
295 3fvq_A Fe(3+) IONS import ATP- 88.6 0.22 7.4E-06 53.2 3.2 25 20-47 31-55 (359)
296 2jaq_A Deoxyguanosine kinase; 88.6 0.27 9.1E-06 47.3 3.6 24 21-44 2-25 (205)
297 2onk_A Molybdate/tungstate ABC 88.4 0.25 8.5E-06 49.7 3.4 22 17-39 23-44 (240)
298 3b85_A Phosphate starvation-in 88.4 0.22 7.4E-06 48.9 2.8 23 20-42 23-45 (208)
299 3cm0_A Adenylate kinase; ATP-b 88.3 0.35 1.2E-05 45.9 4.2 26 19-44 4-29 (186)
300 1nks_A Adenylate kinase; therm 88.3 0.27 9.1E-06 46.8 3.4 24 20-43 2-25 (194)
301 3dl0_A Adenylate kinase; phosp 88.3 0.29 1E-05 47.8 3.8 25 21-45 2-26 (216)
302 3fb4_A Adenylate kinase; psych 88.3 0.29 9.8E-06 47.8 3.7 25 21-45 2-26 (216)
303 2rhm_A Putative kinase; P-loop 88.3 0.35 1.2E-05 46.0 4.3 27 18-44 4-30 (193)
304 1y63_A LMAJ004144AAA protein; 88.3 0.32 1.1E-05 46.3 3.9 25 18-42 9-33 (184)
305 1tev_A UMP-CMP kinase; ploop, 88.2 0.32 1.1E-05 46.3 3.9 26 19-44 3-28 (196)
306 1odf_A YGR205W, hypothetical 3 88.2 0.46 1.6E-05 49.2 5.3 27 16-42 28-54 (290)
307 2pze_A Cystic fibrosis transme 88.2 0.24 8.2E-06 49.3 3.0 20 20-39 35-54 (229)
308 3iij_A Coilin-interacting nucl 88.1 0.31 1.1E-05 46.1 3.7 27 18-44 10-36 (180)
309 2i3b_A HCR-ntpase, human cance 88.1 0.27 9.3E-06 47.4 3.3 22 21-42 3-24 (189)
310 1g6h_A High-affinity branched- 88.1 0.24 8.3E-06 50.3 3.1 20 20-39 34-53 (257)
311 2eyu_A Twitching motility prot 88.1 0.4 1.4E-05 48.7 4.7 25 17-41 23-47 (261)
312 2cbz_A Multidrug resistance-as 88.1 0.25 8.4E-06 49.5 3.1 20 20-39 32-51 (237)
313 2wwf_A Thymidilate kinase, put 88.0 0.25 8.5E-06 48.0 3.0 25 18-42 9-33 (212)
314 2d2e_A SUFC protein; ABC-ATPas 88.0 0.26 9E-06 49.8 3.2 21 20-40 30-50 (250)
315 1b0u_A Histidine permease; ABC 87.9 0.25 8.5E-06 50.3 3.0 25 20-47 33-57 (262)
316 1qhx_A CPT, protein (chloramph 87.9 0.32 1.1E-05 45.7 3.6 25 20-44 4-28 (178)
317 1via_A Shikimate kinase; struc 87.8 0.29 9.9E-06 46.1 3.3 25 20-44 5-29 (175)
318 1qf9_A UMP/CMP kinase, protein 87.8 0.43 1.5E-05 45.3 4.5 26 19-44 6-31 (194)
319 4fid_A G protein alpha subunit 87.8 0.085 2.9E-06 55.9 -0.6 58 97-154 160-239 (340)
320 1ji0_A ABC transporter; ATP bi 87.7 0.27 9.1E-06 49.4 3.1 25 20-47 33-57 (240)
321 3gfo_A Cobalt import ATP-bindi 87.7 0.26 9E-06 50.6 3.0 20 20-39 35-54 (275)
322 1sgw_A Putative ABC transporte 87.7 0.25 8.7E-06 48.7 2.8 25 20-47 36-60 (214)
323 1zuh_A Shikimate kinase; alpha 87.6 0.34 1.2E-05 45.2 3.6 27 18-44 6-32 (168)
324 3kta_A Chromosome segregation 87.6 0.34 1.2E-05 45.8 3.6 24 21-44 28-51 (182)
325 2ff7_A Alpha-hemolysin translo 87.5 0.27 9.4E-06 49.5 3.1 25 20-47 36-60 (247)
326 4e22_A Cytidylate kinase; P-lo 87.5 0.35 1.2E-05 48.9 3.8 28 18-45 26-53 (252)
327 1rz3_A Hypothetical protein rb 87.5 0.34 1.2E-05 47.0 3.6 25 17-41 20-44 (201)
328 1azs_C GS-alpha; complex (lyas 87.4 0.092 3.2E-06 57.0 -0.6 58 97-154 216-295 (402)
329 1nij_A Hypothetical protein YJ 87.4 0.32 1.1E-05 51.0 3.7 26 17-42 2-27 (318)
330 2olj_A Amino acid ABC transpor 87.4 0.28 9.6E-06 50.0 3.0 25 20-47 51-75 (263)
331 2ghi_A Transport protein; mult 87.4 0.28 9.7E-06 49.9 3.1 25 20-47 47-71 (260)
332 2oap_1 GSPE-2, type II secreti 87.4 0.24 8.1E-06 55.7 2.7 23 18-40 259-281 (511)
333 2ehv_A Hypothetical protein PH 87.2 0.31 1E-05 48.6 3.2 23 18-40 29-51 (251)
334 1vpl_A ABC transporter, ATP-bi 87.1 0.3 1E-05 49.6 3.0 20 20-39 42-61 (256)
335 1gvn_B Zeta; postsegregational 87.1 0.59 2E-05 48.2 5.3 27 17-43 31-57 (287)
336 3umf_A Adenylate kinase; rossm 87.1 0.44 1.5E-05 47.0 4.2 31 16-46 26-56 (217)
337 3uie_A Adenylyl-sulfate kinase 87.1 0.55 1.9E-05 45.3 4.8 27 17-43 23-49 (200)
338 2qi9_C Vitamin B12 import ATP- 87.0 0.31 1E-05 49.3 3.0 26 20-48 27-52 (249)
339 2kjq_A DNAA-related protein; s 87.0 0.47 1.6E-05 43.7 4.1 25 18-42 35-59 (149)
340 2rcn_A Probable GTPase ENGC; Y 86.9 0.31 1.1E-05 51.9 3.2 21 20-40 216-236 (358)
341 2zu0_C Probable ATP-dependent 86.9 0.33 1.1E-05 49.6 3.2 21 20-40 47-67 (267)
342 2yz2_A Putative ABC transporte 86.8 0.31 1.1E-05 49.7 3.1 20 20-39 34-53 (266)
343 3gd7_A Fusion complex of cysti 86.8 0.42 1.4E-05 51.6 4.1 45 20-69 48-97 (390)
344 3jvv_A Twitching mobility prot 86.8 0.46 1.6E-05 50.7 4.4 23 20-42 124-146 (356)
345 1sq5_A Pantothenate kinase; P- 86.7 0.43 1.5E-05 49.7 4.1 27 17-43 78-104 (308)
346 2vli_A Antibiotic resistance p 86.7 0.33 1.1E-05 45.8 3.0 26 19-44 5-30 (183)
347 1kht_A Adenylate kinase; phosp 86.6 0.32 1.1E-05 46.1 2.9 25 20-44 4-28 (192)
348 2ixe_A Antigen peptide transpo 86.6 0.33 1.1E-05 49.7 3.1 25 20-47 46-70 (271)
349 2cdn_A Adenylate kinase; phosp 86.6 0.47 1.6E-05 45.7 4.1 29 16-44 17-45 (201)
350 4a74_A DNA repair and recombin 86.5 0.37 1.3E-05 47.2 3.3 36 6-41 11-47 (231)
351 2ihy_A ABC transporter, ATP-bi 86.5 0.34 1.1E-05 49.9 3.0 20 20-39 48-67 (279)
352 2plr_A DTMP kinase, probable t 86.4 0.44 1.5E-05 46.0 3.7 26 19-44 4-29 (213)
353 3k9g_A PF-32 protein; ssgcid, 86.3 0.82 2.8E-05 46.2 5.9 36 96-133 143-178 (267)
354 1aky_A Adenylate kinase; ATP:A 86.3 0.45 1.5E-05 46.6 3.8 27 18-44 3-29 (220)
355 2nq2_C Hypothetical ABC transp 86.2 0.35 1.2E-05 49.0 3.0 25 20-47 32-56 (253)
356 2gza_A Type IV secretion syste 86.2 0.33 1.1E-05 51.9 3.0 23 18-40 174-196 (361)
357 2iyv_A Shikimate kinase, SK; t 86.2 0.38 1.3E-05 45.6 3.1 25 20-44 3-27 (184)
358 2v54_A DTMP kinase, thymidylat 86.1 0.41 1.4E-05 46.1 3.3 24 19-42 4-27 (204)
359 2yvu_A Probable adenylyl-sulfa 85.9 0.47 1.6E-05 45.1 3.6 26 17-42 11-36 (186)
360 1e6c_A Shikimate kinase; phosp 85.9 0.41 1.4E-05 44.7 3.2 25 20-44 3-27 (173)
361 2pt5_A Shikimate kinase, SK; a 85.9 0.49 1.7E-05 43.9 3.7 24 21-44 2-25 (168)
362 2pbr_A DTMP kinase, thymidylat 85.8 0.4 1.4E-05 45.6 3.1 22 21-42 2-23 (195)
363 2ze6_A Isopentenyl transferase 85.8 0.49 1.7E-05 47.8 3.9 25 20-44 2-26 (253)
364 1f2t_A RAD50 ABC-ATPase; DNA d 85.8 0.43 1.5E-05 44.0 3.2 23 21-43 25-47 (149)
365 1gtv_A TMK, thymidylate kinase 85.7 0.25 8.4E-06 48.1 1.5 22 21-42 2-23 (214)
366 2f6r_A COA synthase, bifunctio 85.7 0.49 1.7E-05 48.6 3.8 27 17-44 73-99 (281)
367 1nn5_A Similar to deoxythymidy 85.6 0.46 1.6E-05 46.0 3.5 25 18-42 8-32 (215)
368 1vht_A Dephospho-COA kinase; s 85.6 0.48 1.6E-05 46.4 3.6 23 19-41 4-26 (218)
369 1e4v_A Adenylate kinase; trans 85.5 0.54 1.9E-05 45.9 3.9 24 21-44 2-25 (214)
370 1zak_A Adenylate kinase; ATP:A 85.4 0.5 1.7E-05 46.4 3.6 26 19-44 5-30 (222)
371 2pt7_A CAG-ALFA; ATPase, prote 85.3 0.31 1.1E-05 51.4 2.2 22 19-40 171-192 (330)
372 2bbs_A Cystic fibrosis transme 85.3 0.44 1.5E-05 49.3 3.2 25 20-47 65-89 (290)
373 2grj_A Dephospho-COA kinase; T 85.1 0.56 1.9E-05 45.3 3.7 28 17-44 10-37 (192)
374 1jbk_A CLPB protein; beta barr 85.0 0.83 2.8E-05 42.7 4.9 26 17-42 41-66 (195)
375 2pez_A Bifunctional 3'-phospho 84.9 0.5 1.7E-05 44.6 3.2 24 19-42 5-28 (179)
376 3sr0_A Adenylate kinase; phosp 84.9 0.54 1.8E-05 46.0 3.5 26 21-46 2-27 (206)
377 2pjz_A Hypothetical protein ST 84.8 0.45 1.5E-05 48.4 3.0 24 20-46 31-54 (263)
378 1d1n_A Initiation factor 2; be 84.8 1.5 5.3E-05 37.1 5.7 65 289-364 11-75 (99)
379 3nwj_A ATSK2; P loop, shikimat 84.7 0.5 1.7E-05 47.7 3.3 26 19-44 48-73 (250)
380 2ewv_A Twitching motility prot 84.7 0.51 1.7E-05 50.7 3.5 25 18-42 135-159 (372)
381 3tui_C Methionine import ATP-b 84.7 0.48 1.6E-05 50.6 3.2 21 20-40 55-75 (366)
382 2og2_A Putative signal recogni 84.3 0.89 3E-05 48.4 5.1 24 19-42 157-180 (359)
383 2z0h_A DTMP kinase, thymidylat 84.3 0.59 2E-05 44.6 3.5 22 21-42 2-23 (197)
384 1ak2_A Adenylate kinase isoenz 84.2 0.67 2.3E-05 45.9 3.9 28 17-44 14-41 (233)
385 2p5t_B PEZT; postsegregational 83.9 0.65 2.2E-05 46.7 3.8 28 17-44 30-57 (253)
386 2vp4_A Deoxynucleoside kinase; 83.7 0.5 1.7E-05 46.9 2.7 24 17-40 18-41 (230)
387 1q3t_A Cytidylate kinase; nucl 83.7 0.73 2.5E-05 45.8 4.0 29 16-44 13-41 (236)
388 2x8a_A Nuclear valosin-contain 83.7 0.64 2.2E-05 47.5 3.6 26 19-44 44-69 (274)
389 3a4m_A L-seryl-tRNA(SEC) kinas 83.5 0.78 2.7E-05 46.4 4.1 24 19-42 4-27 (260)
390 2w58_A DNAI, primosome compone 83.4 0.96 3.3E-05 43.4 4.6 24 20-43 55-78 (202)
391 3nh6_A ATP-binding cassette SU 83.3 0.37 1.3E-05 50.2 1.6 20 20-39 81-100 (306)
392 3b9q_A Chloroplast SRP recepto 83.3 0.79 2.7E-05 47.6 4.2 24 19-42 100-123 (302)
393 1p9r_A General secretion pathw 83.2 0.65 2.2E-05 50.6 3.6 34 8-43 158-191 (418)
394 1puj_A YLQF, conserved hypothe 83.2 0.14 4.7E-06 52.9 -1.7 53 102-154 3-61 (282)
395 1z47_A CYSA, putative ABC-tran 83.1 0.61 2.1E-05 49.6 3.2 25 20-47 42-66 (355)
396 1svm_A Large T antigen; AAA+ f 83.0 1 3.5E-05 48.3 5.0 28 16-43 166-193 (377)
397 3bos_A Putative DNA replicatio 83.0 1 3.5E-05 44.1 4.7 26 18-43 51-76 (242)
398 2yyz_A Sugar ABC transporter, 82.9 0.62 2.1E-05 49.7 3.2 25 20-47 30-54 (359)
399 3fkq_A NTRC-like two-domain pr 82.9 1.8 6E-05 46.4 6.8 36 96-133 258-293 (373)
400 3d3q_A TRNA delta(2)-isopenten 82.7 0.83 2.8E-05 48.2 4.0 25 20-44 8-32 (340)
401 1ixz_A ATP-dependent metallopr 82.7 0.74 2.5E-05 46.1 3.6 25 19-43 49-73 (254)
402 3r20_A Cytidylate kinase; stru 82.7 0.77 2.6E-05 45.8 3.6 26 19-44 9-34 (233)
403 2wbm_A MTHSBDS, ribosome matur 82.7 1.6 5.4E-05 43.6 5.8 69 635-705 181-249 (252)
404 1lw7_A Transcriptional regulat 82.7 0.6 2.1E-05 49.9 3.0 25 19-43 170-194 (365)
405 1tue_A Replication protein E1; 82.7 0.86 2.9E-05 44.5 3.8 36 8-43 47-82 (212)
406 2w0m_A SSO2452; RECA, SSPF, un 82.7 0.86 2.9E-05 44.5 4.0 37 6-42 9-46 (235)
407 2xb4_A Adenylate kinase; ATP-b 82.7 0.79 2.7E-05 45.1 3.7 24 21-44 2-25 (223)
408 2it1_A 362AA long hypothetical 82.6 0.65 2.2E-05 49.6 3.2 25 20-47 30-54 (362)
409 3ake_A Cytidylate kinase; CMP 82.5 0.78 2.7E-05 44.1 3.6 24 21-44 4-27 (208)
410 1g29_1 MALK, maltose transport 82.3 0.67 2.3E-05 49.7 3.2 25 20-47 30-54 (372)
411 1v43_A Sugar-binding transport 82.1 0.69 2.4E-05 49.6 3.2 25 20-47 38-62 (372)
412 3rlf_A Maltose/maltodextrin im 82.1 0.69 2.4E-05 49.7 3.2 25 20-47 30-54 (381)
413 2ga8_A Hypothetical 39.9 kDa p 81.9 0.94 3.2E-05 48.0 4.1 27 17-43 22-48 (359)
414 3be4_A Adenylate kinase; malar 81.6 0.96 3.3E-05 44.2 3.9 25 20-44 6-30 (217)
415 3qf7_A RAD50; ABC-ATPase, ATPa 81.6 0.76 2.6E-05 49.1 3.3 22 21-42 25-46 (365)
416 1m7g_A Adenylylsulfate kinase; 81.3 0.83 2.8E-05 44.4 3.2 26 17-42 23-48 (211)
417 2p65_A Hypothetical protein PF 81.3 1.1 3.6E-05 41.9 3.9 26 17-42 41-66 (187)
418 1a7j_A Phosphoribulokinase; tr 81.0 0.48 1.6E-05 49.0 1.4 25 18-42 4-28 (290)
419 1iy2_A ATP-dependent metallopr 80.9 0.95 3.3E-05 46.1 3.7 25 19-43 73-97 (278)
420 2cvh_A DNA repair and recombin 80.9 1.4 4.7E-05 42.7 4.7 36 6-41 6-42 (220)
421 2npi_A Protein CLP1; CLP1-PCF1 80.5 0.82 2.8E-05 50.5 3.2 25 18-42 137-161 (460)
422 1njg_A DNA polymerase III subu 80.5 1.4 4.9E-05 42.8 4.7 35 9-43 35-69 (250)
423 3d31_A Sulfate/molybdate ABC t 80.5 0.54 1.9E-05 49.9 1.7 25 20-47 27-51 (348)
424 1t95_A Hypothetical protein AF 80.3 1.9 6.6E-05 42.7 5.4 68 637-706 168-235 (240)
425 3ohm_A Guanine nucleotide-bind 80.2 0.11 3.9E-06 54.7 -3.7 36 97-132 166-201 (327)
426 3h4m_A Proteasome-activating n 79.6 1.4 4.6E-05 44.9 4.3 27 17-43 49-75 (285)
427 1lv7_A FTSH; alpha/beta domain 79.4 1.1 3.8E-05 44.9 3.6 25 19-43 45-69 (257)
428 4eaq_A DTMP kinase, thymidylat 79.2 1.5 5E-05 43.5 4.3 28 17-44 24-51 (229)
429 1in4_A RUVB, holliday junction 79.2 1 3.5E-05 47.3 3.4 27 18-44 50-76 (334)
430 1xwi_A SKD1 protein; VPS4B, AA 79.1 5.1 0.00017 41.8 8.7 26 18-43 44-69 (322)
431 1cr0_A DNA primase/helicase; R 79.1 1.6 5.3E-05 44.9 4.6 34 9-42 25-58 (296)
432 3qf4_B Uncharacterized ABC tra 79.0 1.1 3.8E-05 51.2 3.8 21 19-39 381-401 (598)
433 3cf0_A Transitional endoplasmi 78.9 1.5 5E-05 45.4 4.4 27 17-43 47-73 (301)
434 3foz_A TRNA delta(2)-isopenten 78.9 1.5 5.2E-05 45.5 4.4 28 17-44 8-35 (316)
435 2yl4_A ATP-binding cassette SU 78.9 1.1 3.7E-05 51.3 3.7 25 20-47 371-395 (595)
436 1oxx_K GLCV, glucose, ABC tran 78.5 0.6 2E-05 49.7 1.2 26 19-47 31-56 (353)
437 3qks_A DNA double-strand break 78.4 1.1 3.9E-05 43.4 3.2 25 20-44 24-48 (203)
438 3euj_A Chromosome partition pr 78.3 1.1 3.7E-05 49.7 3.2 23 20-42 30-52 (483)
439 1hqc_A RUVB; extended AAA-ATPa 78.0 3.4 0.00012 42.6 6.9 26 18-43 37-62 (324)
440 4a82_A Cystic fibrosis transme 77.8 0.98 3.4E-05 51.5 2.8 21 20-40 368-388 (578)
441 1ltq_A Polynucleotide kinase; 77.6 1.2 4.1E-05 45.8 3.2 23 20-42 3-25 (301)
442 2obl_A ESCN; ATPase, hydrolase 77.3 1.4 4.8E-05 46.7 3.7 24 19-42 71-94 (347)
443 3qkt_A DNA double-strand break 77.2 1.2 4.2E-05 46.9 3.2 24 20-43 24-47 (339)
444 1n0w_A DNA repair protein RAD5 77.1 1.4 4.7E-05 43.5 3.4 37 6-42 10-47 (243)
445 3crm_A TRNA delta(2)-isopenten 77.1 1.6 5.5E-05 45.7 4.0 25 20-44 6-30 (323)
446 2ph1_A Nucleotide-binding prot 76.9 0.61 2.1E-05 47.2 0.7 59 96-154 127-193 (262)
447 1p5z_B DCK, deoxycytidine kina 76.4 0.91 3.1E-05 45.9 1.8 24 17-40 22-45 (263)
448 2ocp_A DGK, deoxyguanosine kin 76.1 1.6 5.4E-05 43.4 3.5 25 19-43 2-26 (241)
449 1nlf_A Regulatory protein REPA 76.0 1.5 5.3E-05 44.6 3.5 22 20-41 31-52 (279)
450 3qf4_A ABC transporter, ATP-bi 75.6 1.3 4.5E-05 50.5 3.0 21 20-40 370-390 (587)
451 1l8q_A Chromosomal replication 75.5 2 6.7E-05 44.7 4.2 35 9-43 26-61 (324)
452 3b60_A Lipid A export ATP-bind 75.4 1.4 4.7E-05 50.3 3.2 20 20-39 370-389 (582)
453 3b5x_A Lipid A export ATP-bind 75.3 1.4 4.7E-05 50.3 3.1 22 19-40 369-390 (582)
454 1yqt_A RNAse L inhibitor; ATP- 75.2 1.4 4.7E-05 49.8 3.0 25 20-47 48-72 (538)
455 2qby_A CDC6 homolog 1, cell di 75.0 2.2 7.7E-05 45.0 4.6 26 17-42 43-68 (386)
456 3cr8_A Sulfate adenylyltranfer 74.9 1.8 6.1E-05 48.9 3.9 26 18-43 368-393 (552)
457 2chg_A Replication factor C sm 74.6 2.5 8.4E-05 40.4 4.4 25 18-42 37-61 (226)
458 3tqf_A HPR(Ser) kinase; transf 74.6 2.2 7.4E-05 40.4 3.7 23 20-42 17-39 (181)
459 1yqt_A RNAse L inhibitor; ATP- 73.9 1.6 5.5E-05 49.2 3.2 31 20-54 313-343 (538)
460 1e69_A Chromosome segregation 73.9 1.5 5.1E-05 45.9 2.7 24 21-44 26-49 (322)
461 3ozx_A RNAse L inhibitor; ATP 73.9 1.8 6E-05 48.9 3.5 28 17-47 23-50 (538)
462 2dpy_A FLII, flagellum-specifi 73.7 1.9 6.6E-05 47.2 3.7 33 9-42 148-180 (438)
463 3ozx_A RNAse L inhibitor; ATP 73.7 1.6 5.4E-05 49.2 3.0 24 21-47 296-319 (538)
464 2h92_A Cytidylate kinase; ross 73.6 1.9 6.6E-05 41.8 3.4 25 20-44 4-28 (219)
465 2kdo_A Ribosome maturation pro 73.5 0.83 2.8E-05 45.7 0.6 68 636-706 171-238 (252)
466 2qmh_A HPR kinase/phosphorylas 73.2 2.1 7.1E-05 41.5 3.3 23 20-42 35-57 (205)
467 2qz4_A Paraplegin; AAA+, SPG7, 73.2 2.2 7.5E-05 42.5 3.8 26 18-43 38-63 (262)
468 2dr3_A UPF0273 protein PH0284; 73.0 2.2 7.6E-05 41.9 3.7 35 8-42 11-46 (247)
469 3j16_B RLI1P; ribosome recycli 72.9 1.8 6E-05 49.6 3.2 21 19-39 103-123 (608)
470 3gmt_A Adenylate kinase; ssgci 72.9 2.3 8E-05 42.1 3.7 26 20-45 9-34 (230)
471 3zvl_A Bifunctional polynucleo 72.8 1.7 5.8E-05 47.3 2.9 27 18-44 257-283 (416)
472 2crv_A IF-2MT, translation ini 72.7 8 0.00027 33.9 6.6 53 302-364 30-82 (120)
473 2zan_A Vacuolar protein sortin 72.6 7.6 0.00026 42.4 8.2 26 18-43 166-191 (444)
474 1qhl_A Protein (cell division 72.5 0.4 1.4E-05 47.6 -2.0 22 22-43 30-51 (227)
475 3b9p_A CG5977-PA, isoform A; A 72.5 2.2 7.4E-05 43.7 3.6 26 18-43 53-78 (297)
476 3t15_A Ribulose bisphosphate c 72.4 2.7 9.1E-05 43.2 4.2 28 17-44 34-61 (293)
477 1sxj_E Activator 1 40 kDa subu 72.4 2.1 7.3E-05 44.9 3.6 25 17-41 34-58 (354)
478 3bk7_A ABC transporter ATP-bin 72.2 1.8 6.1E-05 49.6 3.0 25 20-47 118-142 (607)
479 3bk7_A ABC transporter ATP-bin 72.0 1.9 6.5E-05 49.4 3.2 31 20-54 383-413 (607)
480 1w1w_A Structural maintenance 71.9 2.3 7.8E-05 46.4 3.7 27 19-45 26-52 (430)
481 2o5v_A DNA replication and rep 71.6 2 6.9E-05 45.7 3.2 21 21-41 28-48 (359)
482 4aby_A DNA repair protein RECN 71.5 0.91 3.1E-05 49.2 0.4 25 21-45 62-86 (415)
483 3n70_A Transport activator; si 70.8 2.9 0.0001 37.8 3.6 25 17-41 22-46 (145)
484 1pzn_A RAD51, DNA repair and r 70.7 2.7 9.4E-05 44.4 3.9 36 8-43 119-155 (349)
485 3j16_B RLI1P; ribosome recycli 70.5 2.1 7.3E-05 48.9 3.2 19 21-39 380-398 (608)
486 2fna_A Conserved hypothetical 70.4 3.6 0.00012 42.8 4.8 34 8-43 21-54 (357)
487 2v1u_A Cell division control p 70.2 3 0.0001 44.0 4.2 26 17-42 42-67 (387)
488 3cnl_A YLQF, putative uncharac 69.8 0.26 8.9E-06 50.2 -4.2 49 106-154 5-57 (262)
489 1u0j_A DNA replication protein 69.5 5 0.00017 40.6 5.4 37 8-44 92-129 (267)
490 1tf7_A KAIC; homohexamer, hexa 69.4 2.6 9E-05 47.3 3.6 24 17-40 37-60 (525)
491 1fnn_A CDC6P, cell division co 69.1 2.7 9.3E-05 44.5 3.5 25 19-43 44-68 (389)
492 1ko7_A HPR kinase/phosphatase; 69.0 3.1 0.00011 43.2 3.8 24 19-42 144-167 (314)
493 3exa_A TRNA delta(2)-isopenten 68.9 3.1 0.00011 43.2 3.8 26 19-44 3-28 (322)
494 2z4s_A Chromosomal replication 68.9 3.5 0.00012 45.2 4.4 32 11-42 122-153 (440)
495 3auy_A DNA double-strand break 68.7 2.6 9.1E-05 44.9 3.3 22 20-41 26-47 (371)
496 1d2n_A N-ethylmaleimide-sensit 68.7 3.6 0.00012 41.5 4.2 27 17-43 62-88 (272)
497 4edh_A DTMP kinase, thymidylat 68.7 3.5 0.00012 40.3 3.9 25 18-42 5-29 (213)
498 3syl_A Protein CBBX; photosynt 68.5 3.5 0.00012 42.2 4.2 28 16-43 64-91 (309)
499 3a8t_A Adenylate isopentenyltr 68.4 2.9 9.8E-05 44.0 3.4 25 19-43 40-64 (339)
500 4i1u_A Dephospho-COA kinase; s 68.1 2.7 9.1E-05 41.1 2.9 25 19-44 9-33 (210)
No 1
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=100.00 E-value=3.7e-138 Score=1242.76 Aligned_cols=748 Identities=59% Similarity=0.981 Sum_probs=655.3
Q ss_pred CcccCHHHHHHhhcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEe
Q 004467 1 MVKFTAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80 (752)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~ 80 (752)
|.+|+.+++.++|+.++++|||+|+||+|||||||+++|++.+|.+.+...|..+++|++++|++|||||.++.+++.|.
T Consensus 1 ~~~~~~~~~~~~m~~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~ 80 (842)
T 1n0u_A 1 MVAFTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSE 80 (842)
T ss_dssp --CBCHHHHHHHHHCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEE
T ss_pred CcccCHHHHHHHhhCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEec
Confidence 78999999999999889999999999999999999999999999988765666789999999999999999999999996
Q ss_pred eccchhccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHh
Q 004467 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERL 153 (752)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkl 153 (752)
........+....+++++.+||+|||||.||..++.++++.+|+||+|||+++|++ .++...++|.++|+||+
T Consensus 81 ~~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~ 160 (842)
T 1n0u_A 81 MSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKV 160 (842)
T ss_dssp CCHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECH
T ss_pred ccccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence 21111111111123457899999999999999999999999999999999999966 55567789999999999
Q ss_pred hCC--C-----------Ccchhh---------------------------------------------------------
Q 004467 154 WGE--N-----------FFDPAT--------------------------------------------------------- 163 (752)
Q Consensus 154 dg~--~-----------~~~~~~--------------------------------------------------------- 163 (752)
|.. + +...+.
T Consensus 161 D~~~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l 240 (842)
T 1n0u_A 161 DRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKM 240 (842)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHH
T ss_pred CcchhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHH
Confidence 932 1 100000
Q ss_pred --ccccc------------cC---CCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHH
Q 004467 164 --KKWTT------------KN---TGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKAL 226 (752)
Q Consensus 164 --~~~~~------------~~---~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l 226 (752)
..|+. .. .+. ...+.|++++++|+|++++++++.+++++++||+.+|+.++.+++..+.+.+
T Consensus 241 ~~~~~~d~~~~~~~~~~~~~~i~~~~~-~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l 319 (842)
T 1n0u_A 241 MDRLWGDSFFNPKTKKWTNKDTDAEGK-PLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKAL 319 (842)
T ss_dssp HHHTSSSCEEETTTTEEESCSBCTTCC-BCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHH
T ss_pred HHHHhccccccCCCCeEEEecCCchhh-hhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHH
Confidence 00100 00 000 1245788889999999999999999999999999999999988888788999
Q ss_pred HHHHHhccccchHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEE
Q 004467 227 MKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGR 306 (752)
Q Consensus 227 ~~~~~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~R 306 (752)
++++++.|+|+++.|||+|++++|||.+++.++...+|+|+..++....++.|++++||+++|||++.+++.|++++|+|
T Consensus 320 ~~~~~~~~~pv~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~R 399 (842)
T 1n0u_A 320 LKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGR 399 (842)
T ss_dssp HHHHHHHHSBHHHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEE
T ss_pred HHHHHhhccchHHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEE
Confidence 99999999999999999999999999998888888888886544444456778999999999999999999997799999
Q ss_pred EEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEeccccccccceeeccCCCCCccc
Q 004467 307 VFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHP 386 (752)
Q Consensus 307 V~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~Gl~~~~~~tgTL~~~~~~~~~~ 386 (752)
||||+|++||.|++++++++++..+++..+||++|++++|+++++|++|.|||||+|.|++++.+++||||+.. .+.+
T Consensus 400 V~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~~~~--~~~~ 477 (842)
T 1n0u_A 400 VFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSE--TAHN 477 (842)
T ss_dssp EEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEESCT--TCCC
T ss_pred EEeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeecCCC--Cccc
Confidence 99999999999999988877765544556899999999999999999999999999999999888888999977 6778
Q ss_pred cccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEcCCCcEEEEecchhhHHHHHHHHHhhcCCCcEEEE
Q 004467 387 IRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIK 466 (752)
Q Consensus 387 ~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~etge~il~g~GelhLei~~~rL~~~f~~~vev~~ 466 (752)
++++.|+.+|+++++|+|++++|.+||.+||++|++|||+|++..+||||++|+|||||||||+++||+++|| |+++.+
T Consensus 478 l~~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kL~~eDp~l~v~~~etge~il~g~GelHLei~~~rL~~~f~-~vev~~ 556 (842)
T 1n0u_A 478 MKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDHA-GVPLKI 556 (842)
T ss_dssp BCCCCCCCSCCEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEEEECTTSCEEEEESSHHHHHHHHHHHHHTTS-CSCEEE
T ss_pred cccCCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHhCCcEEEEEcCCCCEEEEeccHHHHHHHHHHHHHHhc-CCceEe
Confidence 8888887679999999999999999999999999999999999988999999999999999999999999998 999999
Q ss_pred eCcEEEEEeecccccceeEEeecCCCceEEEEEEEeCChhhHHHHHcCCCCCCCChHHHHHHhhhhcCCchhccCcEEEe
Q 004467 467 SDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCF 546 (752)
Q Consensus 467 s~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 546 (752)
++|+|+|||||.++++..++.+++++|+++++++|||++++.+.++.|.+...++.+++.+.|..+|+||.++++++|+|
T Consensus 557 ~~P~V~yrETi~~~~~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~g~v~~~~~~~~~~~~l~~~~~~d~~~~~~iw~~ 636 (842)
T 1n0u_A 557 SPPVVAYRETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCF 636 (842)
T ss_dssp ECCCCCCEEEESSCCSSCEEEECTTSSCEEEEEEEECCHHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCHHHHHTEEEE
T ss_pred cCcEEEEEEeeccccccceeeccCCcceEEEEEEEECcHHHhhHhhcCeecccccHHHHHHHHHHhcCcchhhhhceeee
Confidence 99999999999999888888899999999999999999999999999988877888999999999999999999999999
Q ss_pred ccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCcCCCCeeeeEEEEEeeeecccccccCCCchHHHHHHHHHHH
Q 004467 547 GPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYAS 626 (752)
Q Consensus 547 ~P~~~~~n~~~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~d~~~~~~~~~~~a~~~a~~~a 626 (752)
+|+..|+|+|+|.+.|.+++++++++|++||+||+++|||||+||+||+|+|+|+++|.|+++++++||++|+++||++|
T Consensus 637 ~p~~~~~~~f~~~~~g~~~~~~~~~~v~~G~~~a~~~G~L~g~pv~~v~v~l~dg~~h~d~~~~~~g~f~~a~~~a~~~a 716 (842)
T 1n0u_A 637 GPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAG 716 (842)
T ss_dssp SSTTTSSEEEEECCCCCTTHHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGGGSSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCcEEEecCCCccccHHHHHHHHHHHHHHHhcCCcCCceeeeEEEEEEEeeecCCccccchhHHHHHHHHHHHHH
Confidence 99877899999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred HHhCCCeEEeeEEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhhcCchHHhhhhCCCceeeee
Q 004467 627 QLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQC 706 (752)
Q Consensus 627 ~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 706 (752)
+++|+|+||||||+|+|+||++++|+|++||++|||+|+++++.+|+++++|+|++|++|||||+++|||+|||+|+|+|
T Consensus 717 ~~~a~p~LLEPi~~veI~vP~e~~G~V~~dL~~RRG~i~~~~~~~g~~~~~I~a~vP~aE~fgy~~~LRs~T~G~g~~~~ 796 (842)
T 1n0u_A 717 FLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQM 796 (842)
T ss_dssp HHHSCEEEEEEEEEEEEEECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEE
T ss_pred HHhCCCeEEeeEEEEEEEccHHHHHHHHHHHHhcCcEEeccccCCCCceEEEEEEcChHHhhhhHHHHHhhCCCCceEEE
Confidence 99999999999999999999999999999999999999999988777789999999999999999999999999999999
Q ss_pred EecceeecCCCCCCCchHHHHHHHHHHHhcCCCCCCCCcccccccC
Q 004467 707 VFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 752 (752)
Q Consensus 707 ~f~~y~~v~~d~~~~~~~~~~~~~~~r~rkGl~~~i~~~~~~~~~l 752 (752)
+|+||++||+||++++|+|+++++++||||||++++|.+.+|+|+|
T Consensus 797 ~F~~y~~vp~~~~~~~~~a~~~~~~~R~rKGl~~~~p~~~~~~d~~ 842 (842)
T 1n0u_A 797 VFDHWSTLGSDPLDPTSKAGEIVLAARKRHGMKEEVPGWQEYYDKL 842 (842)
T ss_dssp EEEEEEECCSCTTCTTSHHHHHHHHHHHHTTCCSSCCCGGGGCCCC
T ss_pred EeccceeCCCCccchhhHHHHHHHHHHHhCCCCCCCCCHHHhccCC
Confidence 9999999999999999999999999999999999999999999997
No 2
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=2.3e-118 Score=1057.59 Aligned_cols=624 Identities=28% Similarity=0.411 Sum_probs=489.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC----ccccCCchhHhHhcceeccceEEEEEeeccchhccccCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGE 92 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~----~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~ 92 (752)
++||||||+||+|||||||+|+||+++|.+++ .|+ .++||++++||||||||+|+.+++.|+. ..
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~--~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~---------~~ 79 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHK--LGEVHDGAATTDWMVQEQERGITITSAAVTTFWKG---------SR 79 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHH--C------------------------CCEEEEEECC---------TT
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCc--CceecCCCccCCChHHHHHcCCeEEeeeEEEEecc---------Cc
Confidence 78999999999999999999999999999887 443 5799999999999999999999999973 11
Q ss_pred CCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh--CCCCcchhh
Q 004467 93 RNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW--GENFFDPAT 163 (752)
Q Consensus 93 ~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld--g~~~~~~~~ 163 (752)
.++++|+|||||||||+||+.||.+||+++|+||+||||++||+ ++|.+.++|.++|+|||| ++++...++
T Consensus 80 ~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ 159 (709)
T 4fn5_A 80 GQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVE 159 (709)
T ss_dssp SCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHH
T ss_pred CCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHH
Confidence 23458999999999999999999999999999999999999998 889999999999999999 677766655
Q ss_pred c---cccccC------CCCccccCcceeeE-----------------echH------------HHHHHHhhccchhhHHH
Q 004467 164 K---KWTTKN------TGSATCKRGFVQFC-----------------YEPI------------KQIINTCMNDQKDKLWP 205 (752)
Q Consensus 164 ~---~~~~~~------~g~~~~~~~fv~~~-----------------l~~i------------~~l~~~~~~~~~~~l~~ 205 (752)
. ++...+ .|.+..+.++++++ ..++ ..+++.+++.++.++++
T Consensus 160 ei~~~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~ 239 (709)
T 4fn5_A 160 QIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNK 239 (709)
T ss_dssp HHHHHHCSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHH
T ss_pred HhhhhcccceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3 232221 23222222222211 1111 13567777888899999
Q ss_pred HHHHcCCCCChhhHhhchHHHHHHHH-hccccc----------hHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccc
Q 004467 206 MLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYAN 274 (752)
Q Consensus 206 ~l~~l~~~l~~~~~~~~~~~l~~~~~-~~~~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~ 274 (752)
|++. ..++..++. ..+..... ..++|+ ++.|||++++++|+|.+.+..+. +...++...
T Consensus 240 ~~~~--~~~~~~~~~---~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~-----~~~~~~~~~ 309 (709)
T 4fn5_A 240 YLEE--GELSEAEIK---EGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKG-----VSPDDETVE 309 (709)
T ss_dssp HHHH--SCCCHHHHH---HHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEEC-----BCCC-CCSC
T ss_pred HHhc--CCccHHHHH---HHHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCCCCcccccccc-----cCCcccccc
Confidence 9988 566655552 22333332 456664 67899999999999987654332 222333445
Q ss_pred cccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeecc
Q 004467 275 AIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVED 354 (752)
Q Consensus 275 ~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~e 354 (752)
..+.|++++||+++|||+..+++.|+ ++|+|||||+|++||+|++ .+++++ +++.+++.++|++++++++
T Consensus 310 ~~~~~d~~~pl~~~VfK~~~d~~~G~-la~~RV~sGtl~~G~~v~~----~~~~~~-----~~v~~l~~~~g~~~~~v~~ 379 (709)
T 4fn5_A 310 DERHADDNEPFSSLAFKIATDPFVGT-LTFARVYSGVLSSGDSVLN----SVKGKK-----ERVGRMVQMHANQREEIKE 379 (709)
T ss_dssp CEECSCTTSCCEEEEEECCCBTTTBC-CCEEEEEESCEETTCBCBC----TTTCCC-----CBCCCEECCCSSCCCEESE
T ss_pred ccccCCccCcceEEEEEeecccCCCc-eEEEeccCCCCCCCCEEEE----ecCCcE-----EeecceeEeecceeeEeee
Confidence 66788999999999999999999887 9999999999999999984 334443 6899999999999999999
Q ss_pred ccCCCEEEEeccccccccce-eeccCCCCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEc-
Q 004467 355 VPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE- 432 (752)
Q Consensus 355 a~AGdIvai~Gl~~~~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~- 432 (752)
|.|||||+|.|++++ .+| |||+.+ .+..++++.++ +|+++++|+|.+++|.+||.++|++|+++||+|+++.+
T Consensus 380 ~~aGdIv~i~Gl~~~--~~gdTl~~~~--~~~~~~~~~~~-~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v~~~e 454 (709)
T 4fn5_A 380 VRAGDIAALIGMKDV--TTGDTLCSIE--KPIILERMDFP-EPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDE 454 (709)
T ss_dssp ECTTCEEEECSCSSC--CTTCEEECSS--SCCBCC----C-CCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEEEEET
T ss_pred ecCCCeeeecCCCcC--ccCCEecCCC--ccccCCCCCCC-CcceEEEEecCCHHHhhhhHHHHHHHHHhCCeEEEEEec
Confidence 999999999999986 455 999987 67778888886 99999999999999999999999999999999999875
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhhcCCCcEEEEeCcEEEEEeecccccceeEEeecCCCceEEEEEEEeCChhhHHHHH
Q 004467 433 ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAID 512 (752)
Q Consensus 433 etge~il~g~GelhLei~~~rL~~~f~~~vev~~s~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~ePl~~~~~~~i~ 512 (752)
+|||++|+||||||||||++||+++| |+++++|+|+|+|||||++.+. +..++|++ +
T Consensus 455 etge~vi~g~GELHLei~l~rLr~e~--gvev~vs~P~V~yrETi~~~~~-----~~~~~~~k----------------~ 511 (709)
T 4fn5_A 455 ESGQTIISGMGELHLDIIVDRMKREF--GVEANIGKPQVAYRETITKDNV-----EIEGKFVR----------------Q 511 (709)
T ss_dssp TTTEEEEEESCHHHHHHHHHHHHTTT--CCCBCCBCCCCCCEEECCCCSE-----EEEEEEEE----------------E
T ss_pred CCCcEEEEEECHHHHHHHHHHHHHHh--CceEEEeeceEEEEEEEecCCc-----eecceeee----------------c
Confidence 89999999999999999999999999 9999999999999999987542 11223322 2
Q ss_pred cCCCCCCCChHHHHHHhhhhcC--CchhccCcEEEeccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCcCCCC
Q 004467 513 DGRIGPRDDPKARSKILSEEFG--WDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEEN 590 (752)
Q Consensus 513 ~g~~~~~~~~~~~~~~l~~~~~--~~~~~~~~v~~~~P~~~~~n~~~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~~p 590 (752)
+|+. +||+ |+......+|.++|.. .++.|.+.+.|..++++++++|++||+||+++|||||+|
T Consensus 512 ~~~~--------------~~~~~~~~~~~~~~~~e~g~~~-~~~~f~~~~~~~~~p~~~~~~v~~g~~~a~~~G~l~g~p 576 (709)
T 4fn5_A 512 SGGR--------------GQFGHCWIRFSAADVDEKGNIT-EGLVFENEVVGGVVPKEYIPAIQKGIEEQMKNGVVAGYP 576 (709)
T ss_dssp ETTE--------------EEEEEEEEEEECCCBC-CCCBC-CEEEEEECC-CCSSCGGGHHHHHHHHHHHHHHCSSSSCC
T ss_pred cCCc--------------CcceeEEEEEeeccccccCCCc-CceEEecccccccCCHHHHHHHHHHHHHHHhcCcccCCc
Confidence 2211 2222 1111122233334332 358999999999999999999999999999999999999
Q ss_pred eeeeEEEEEeeeecccccccCCCchHHHHHHHHHHHHHhCCCeEEeeEEEEEEEecCcccccHHHHhhhhcccccccccc
Q 004467 591 MRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQR 670 (752)
Q Consensus 591 v~~v~v~l~d~~~~~d~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~ 670 (752)
|+||+|+|.|+++|.+.++.. .|..|+++||++|+++|+|+||||||.|+|+||++++|+|+++|++|||+|+++++.
T Consensus 577 v~~v~v~l~dg~~h~~~s~~~--~f~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~G~V~~~L~~RRG~i~~~~~~ 654 (709)
T 4fn5_A 577 LIGLKATVFDGSYHDVDSNEM--AFKIAASMATKQLAQKGGGKVLEPIMKVEVVTPEDYMGDVMGDLNRRRGLIQGMEDT 654 (709)
T ss_dssp BSEEEEEEEECCCCTTTBCHH--HHHHHHHHHHHTHHHHSCCEEEEEEEEEEEEEETTTHHHHHHHHGGGTCEEEEEEEC
T ss_pred eeeeEEEEEEccccCCCCChH--HHHHHHHHHHHHHHHHCCCEEECceEEEEEEECHHHHHHHHHHHHhcCCEEeceEec
Confidence 999999999999997444433 355699999999999999999999999999999999999999999999999998876
Q ss_pred CCCCcEEEEEEecchhhcCchHHhhhhCCCceeeeeEecceeecCCCC
Q 004467 671 PGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDP 718 (752)
Q Consensus 671 ~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~d~ 718 (752)
.+ ..+|+|++|++|||||+++|||+|||+|+|+|+|+||++||+|+
T Consensus 655 ~~--~~~i~a~vPv~E~~gf~~~LRs~T~G~a~~~~~F~~y~~vp~~~ 700 (709)
T 4fn5_A 655 VS--GKVIRAEVPLGEMFGYATDVRSMSQGRASYSMEFSKYAEAPSNI 700 (709)
T ss_dssp SS--EEEEEEEEESGGGTTHHHHHHHHTTTCCEEECCEEEEEECCHHH
T ss_pred CC--CEEEEEEecHHHhhCHHHHHHhhCCCeEEEEEEECCcccCCcCH
Confidence 64 67899999999999999999999999999999999999999975
No 3
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=2.3e-108 Score=967.65 Aligned_cols=625 Identities=27% Similarity=0.377 Sum_probs=519.8
Q ss_pred ccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC----ccccCCchhHhHhcceeccceEEEEEeeccchhcccc
Q 004467 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYK 90 (752)
Q Consensus 15 ~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~----~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~ 90 (752)
.++++|||+|+||+|||||||+++|++.+|.+.+ .|+ .+++|++++|++||+|+.++..++.|...
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~--~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~-------- 75 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHK--IGEVHDGAATMDWMEQEQERGITITSAATTAFWSGM-------- 75 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCccc--ccccCCCceeecChhhHHhcCceeeeceEEEEECCc--------
Confidence 4578999999999999999999999999998776 332 47999999999999999999999998610
Q ss_pred CCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh--CCCCcch
Q 004467 91 GERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW--GENFFDP 161 (752)
Q Consensus 91 ~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld--g~~~~~~ 161 (752)
..+++.+.+||||||||.||..++.++++.+|+||+|||+++|++ .++...++|.++|+||+| ++++.+.
T Consensus 76 -~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~ 154 (704)
T 2rdo_7 76 -AKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKV 154 (704)
T ss_pred -cccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHH
Confidence 012345999999999999999999999999999999999999976 566778999999999999 5555444
Q ss_pred hhc---ccccc------CCCCccccCcceee-----------------------------EechHHHHHHHhhccchhhH
Q 004467 162 ATK---KWTTK------NTGSATCKRGFVQF-----------------------------CYEPIKQIINTCMNDQKDKL 203 (752)
Q Consensus 162 ~~~---~~~~~------~~g~~~~~~~fv~~-----------------------------~l~~i~~l~~~~~~~~~~~l 203 (752)
++. .+... |+|.+..+.+++++ +.++..++++.+++.+++++
T Consensus 155 ~~~l~~~l~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~ 234 (704)
T 2rdo_7 155 VNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELM 234 (704)
T ss_pred HHHHHHHhCCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 432 22211 12221112222221 22344578888899999999
Q ss_pred HHHHHHcCCCCChhhHhhchHHHHHHHH-hccccc----------hHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccc
Q 004467 204 WPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQY 272 (752)
Q Consensus 204 ~~~l~~l~~~l~~~~~~~~~~~l~~~~~-~~~~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~ 272 (752)
++|++. ..++.+++. ..+.+.++ ..|+|+ ++.|||++++++|+|.+++.++. |. +..+.
T Consensus 235 e~~l~~--~~l~~~~l~---~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~---~~-~~~~~- 304 (704)
T 2rdo_7 235 EKYLGG--EELTEAEIK---GALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAING---IL-DDGKD- 304 (704)
T ss_pred HHHhcC--CCCCHHHHH---HHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhcccccc---cC-Ccccc-
Confidence 999986 778777763 34444444 578887 68999999999999987654432 11 11111
Q ss_pred cccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeee
Q 004467 273 ANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETV 352 (752)
Q Consensus 273 ~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V 352 (752)
......|++++||+++|||++.+++.|+ ++|+|||||+|++||+|++.+ .+. .++|.+|+.++|+++++|
T Consensus 305 ~~~~~~~~~~~p~~~~VfK~~~d~~~G~-~~~~RV~sG~l~~g~~v~~~~----~~~-----~~~v~~l~~~~g~~~~~v 374 (704)
T 2rdo_7 305 TPAERHASDDEPFSALAFKIATDPFVGN-LTFFRVYSGVVNSGDTVLNSV----KAA-----RERFGRIVQMHANKREEI 374 (704)
T ss_pred cccccccCCCCceEEEEEEEEEcCCCce-EEEEEEEeeeecCCCEEEeCC----CCc-----EEEeceEEEEeCCCceEc
Confidence 1235567889999999999999999997 899999999999999999542 233 379999999999999999
Q ss_pred ccccCCCEEEEeccccccccce-eeccCCCCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEE
Q 004467 353 EDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI 431 (752)
Q Consensus 353 ~ea~AGdIvai~Gl~~~~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~ 431 (752)
++|.|||||+|.|++++ .+| |||+.. .+.+++++.++ +|+++++|+|.+++|.+||.++|++|++|||+|++..
T Consensus 375 ~~~~aGdIv~i~gl~~~--~~GdTl~~~~--~~~~l~~~~~~-~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~ 449 (704)
T 2rdo_7 375 KEVRAGDIAAAIGLKDV--TTGDTLCDPD--APIILERMEFP-EPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWT 449 (704)
T ss_pred ceeCCCCEEEEeCcccC--ccCCEEeCCC--cccccCCCCCC-CceEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEEE
Confidence 99999999999999987 667 999877 66788888886 8999999999999999999999999999999999998
Q ss_pred c-CCCcEEEEecchhhHHHHHHHHHhhcCCCcEEEEeCcEEEEEeeccccc-ceeEEee----cCCCceEEEEEEEeCCh
Q 004467 432 E-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKS-CRTVMSK----SPNKHNRLYMEARPLEE 505 (752)
Q Consensus 432 ~-etge~il~g~GelhLei~~~rL~~~f~~~vev~~s~p~V~yrETi~~~~-~~~~~~~----~~~~~~~i~~~~ePl~~ 505 (752)
+ ||||++|+|||||||||+++||+++| |+++.+++|+|+|||||.+++ +.....+ ..++|.+++++++|+++
T Consensus 450 ~~etge~il~g~GelhLei~~~rL~~~f--~v~v~~~~p~V~yrEti~~~~~~~~~~~~kq~gg~~q~~~v~~~~ePl~~ 527 (704)
T 2rdo_7 450 DEESNQTIIAGMGELHLDIIVDRMKREF--NVEANVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEP 527 (704)
T ss_pred cCCCCcEEEEeCCHHHHHHHHHHHHHHh--CceEEEeCCEEEEEEeeccccccceeeeccccCCCCeeEEEEEEEEECCC
Confidence 6 89999999999999999999999999 999999999999999998866 4332221 12223344444444421
Q ss_pred hhHHHHHcCCCCCCCChHHHHHHhhhhcCCchhccCcEEEeccCCC-CCceEEecccCccchHHHHHHHHHHHHHHHHcC
Q 004467 506 GLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETT-GPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEG 584 (752)
Q Consensus 506 ~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~P~~~-~~n~~~~~~~~~~~~~~~~~~i~~G~~~a~~~G 584 (752)
| +. .+|.|.+.+.|..++++|+++|++||+||+++|
T Consensus 528 --------~-----------------------------------~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G 564 (704)
T 2rdo_7 528 --------G-----------------------------------SNPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAG 564 (704)
T ss_pred --------C-----------------------------------CCCCCcEEEEeccCCcCcHHHHHHHHHHHHHHHhcC
Confidence 0 22 258999999999999999999999999999999
Q ss_pred CcCCCCeeeeEEEEEeeeecc-cccccCCCchHHHHHHHHHHHHHhCCCeEEeeEEEEEEEecCcccccHHHHhhhhccc
Q 004467 585 ALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGH 663 (752)
Q Consensus 585 pl~~~pv~~v~v~l~d~~~~~-d~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~ 663 (752)
|||||||+||+|+|+|+++|. ||++ .+|+.|+++||++|+++|+|+||||||+|+|+||++++|+|+++|++|||+
T Consensus 565 ~l~g~pv~~v~v~l~dg~~h~~ds~~---~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~ 641 (704)
T 2rdo_7 565 PLAGYPVVDMGIRLHFGSYHDVDSSE---LAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGM 641 (704)
T ss_pred CcCCCceeeEEEEEEeccccCCCCcH---HHHHHHHHHHHHHHHHhcCCeeeeeEEEEEEEeCHHHHhHHHHHHHhCCce
Confidence 999999999999999999997 4443 468899999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCcEEEEEEecchhhcCchHHhhhhCCCceeeeeEecceeecCCCCCCCchHHHHHHHH
Q 004467 664 VFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVAD 731 (752)
Q Consensus 664 i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~d~~~~~~~~~~~~~~ 731 (752)
|+++++.++ .+.|+|++|++|||||+++|||+|+|+|+|+|+|+||+++|+++ +++++++
T Consensus 642 i~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~------~~~i~~~ 701 (704)
T 2rdo_7 642 LKGQESEVT--GVKIHAEVPLSEMFGYATQLRSLTKGRASYTMEFLKYDEAPSNV------AQAVIEA 701 (704)
T ss_pred EeCceecCC--eEEEEEEecHHHHhhHHHHhHhhcCCceEEEEEeCcceECCccH------HHHHHHH
Confidence 999998764 78999999999999999999999999999999999999999986 8888876
No 4
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=1.4e-113 Score=1003.46 Aligned_cols=585 Identities=21% Similarity=0.255 Sum_probs=491.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC----ccccCCchhHhHhcceeccceEEEEEeeccchhccccCCC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGER 93 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~----~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~ 93 (752)
+||||||+||+|||||||+|+||+++|.+++ .|+ .++||++++||||||||+++.++|.|+
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~--~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~------------- 65 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITE--LGSVDKGTTRTDNTLLERQRGITIQTGITSFQWE------------- 65 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSS--CSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCS-------------
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCcc--ccccccCCcccCCcHHHHhCCCcEEeeeEEEEEC-------------
Confidence 6999999999999999999999999999988 443 479999999999999999999999996
Q ss_pred CCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh--CCCCcchhhc
Q 004467 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW--GENFFDPATK 164 (752)
Q Consensus 94 ~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld--g~~~~~~~~~ 164 (752)
+|+|||||||||+||+.||.+||+++|+||+||||++||+ ++|.++++|+++|+|||| ++++......
T Consensus 66 ---~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~ 142 (638)
T 3j25_A 66 ---NTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQD 142 (638)
T ss_dssp ---SCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHH
T ss_pred ---CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHH
Confidence 7999999999999999999999999999999999999998 889999999999999999 7788766653
Q ss_pred ---cccccC--CCCccccCc--ceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHH-Hhcccc
Q 004467 165 ---KWTTKN--TGSATCKRG--FVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRV-MQTWLP 236 (752)
Q Consensus 165 ---~~~~~~--~g~~~~~~~--fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~-~~~~~P 236 (752)
++.... .+.-.+... ...+ .-.+..+.+++.+++.+++|++. ..++..++.. .+.... ...++|
T Consensus 143 i~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~e~~~e~~d~l~e~~~~~--~~~~~~~~~~---~~~~~~~~~~~~P 214 (638)
T 3j25_A 143 IKEKLSAEIVIKQKVELYPNVCVTNF---TESEQWDTVIEGNDDLLEKYMSG--KSLEALELEQ---EESIRFQNCSLFP 214 (638)
T ss_dssp HHHTTCCCCCCCCCCCSCGGGCCCCC---CCHHHHHHHHHHHCHHHHHHHHH--CCCCSHHHHH---HHHHHHHHTSCCC
T ss_pred HHHHhCCCccccceeEeecccccccc---chhhhhhhhhcccHHHHhhhccC--CccchHHHHH---HHhhhhccccccc
Confidence 332211 000000000 0001 11234667777888899999987 5555554421 122222 245677
Q ss_pred c----------hHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEE
Q 004467 237 A----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGR 306 (752)
Q Consensus 237 ~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~R 306 (752)
+ ++.|||++++++|+|.+ +.++||+++|||+..+++.|+ ++|+|
T Consensus 215 v~~gSa~~~~Gv~~LLd~i~~~~p~p~~-------------------------~~~~~~~~~Vfk~~~d~~~G~-la~~R 268 (638)
T 3j25_A 215 LYHGSAKSNIGIDNLIEVITNKFYSSTH-------------------------RGPSELCGNVFKIEYTKKRQR-LAYIR 268 (638)
T ss_dssp CCCCCSTTCCSHHHHHHHHHHSCCCSGG-------------------------GSCCCCCBEEBCCCCCSTTCC-CCBCC
T ss_pred ccccccccCCCchhHhhhhhccccCccc-------------------------chhhhhcceeeeeeeeccCce-EEEEE
Confidence 5 78999999999999953 345789999999999999987 99999
Q ss_pred EEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeccCCCCCcc
Q 004467 307 VFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAH 385 (752)
Q Consensus 307 V~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~Gl~~~~~~tg-TL~~~~~~~~~ 385 (752)
||||+|++||.|++.. .++ +++.+++.++|.++.++++|.|||||++.|. .. ++| |+++.. ...
T Consensus 269 V~sG~l~~g~~v~~~~-----~~~-----~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g~-~~--~~~~tl~d~~--~~~ 333 (638)
T 3j25_A 269 LYSGVLHLRDSVRVSE-----KEK-----IKVTEMYTSINGELCKIDRAYSGEIVILQNE-FL--KLNSVLGDTK--LLP 333 (638)
T ss_dssp BSSBCCCSCCCSSSCC-----CCC-----SSBCCCCSSCCCCBSCCCTTBCCCCSCCCSS-SC--SSEECSSSSS--SGG
T ss_pred EEcCcccCCCcccccc-----Ccc-----eeEEeeecccccccccccccccceEEEEecc-cc--ccCceecCCC--Ccc
Confidence 9999999999998542 112 5899999999999999999999999999882 22 455 777766 555
Q ss_pred ccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEc-CCCcEEEEecchhhHHHHHHHHHhhcCCCcEE
Q 004467 386 PIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEI 464 (752)
Q Consensus 386 ~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~-etge~il~g~GelhLei~~~rL~~~f~~~vev 464 (752)
.++.+.++ +|+++++|+|.+++|.+||.++|++|++|||+++++.+ ++||++|+|||||||||+++||+++| |+++
T Consensus 334 ~~~~i~~p-~Pv~~~aiep~~~~d~~kL~~aL~kL~~eDPsl~v~~~~et~e~il~g~GeLHLei~~~rL~~ef--gvev 410 (638)
T 3j25_A 334 QRKKIENP-HPLLQTTVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKY--HVEI 410 (638)
T ss_dssp GCSCCCCC-CCCCCCEEECCSHHHHHHHHHHHHHHHHTCTTCCCCCCSSSSCCCCCCSSHHHHHHHHHHHTTTT--CCCC
T ss_pred cccCccCC-CccceeeeccCChHHHHHHHHHHHHHhhcCCeeEEEecCCCceEEEccccHHHHHHHHHHHHHHh--CCcE
Confidence 66667665 99999999999999999999999999999999999887 89999999999999999999999999 9999
Q ss_pred EEeCcEEEEEeecccccceeEEeecCCCceEEEEEEEeCChhhHHHHHcCCCCCCCChHHHHHHhhhhcCCchhccCcEE
Q 004467 465 IKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIW 544 (752)
Q Consensus 465 ~~s~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 544 (752)
.+|+|+|+|||||.++++...+. +++.. ++|+. ||
T Consensus 411 ~~~~P~V~yrEti~~~~~~~~~~------------------------~~~~~--------------~~~~~-------v~ 445 (638)
T 3j25_A 411 ELKEPTVIYMERPLKNAEYTIHI------------------------EVPPN--------------PFWAS-------IG 445 (638)
T ss_dssp EEECCCCCCCBCCCSCCEECCCC------------------------CSSSC--------------CCCCC-------CC
T ss_pred EEeCCceeEEEEecccceEEEEE------------------------ecCCC--------------CceEE-------EE
Confidence 99999999999999876432221 22221 23332 45
Q ss_pred E-eccCCCC-CceEEecccCccchHHHHHHHHHHHHHHHHcCCcCCCCeeeeEEEEEeeeecccccccCCCchHHHHHHH
Q 004467 545 C-FGPETTG-PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRV 622 (752)
Q Consensus 545 ~-~~P~~~~-~n~~~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~d~~~~~~~~~~~a~~~a 622 (752)
. ++|...| ++.|.+.+.++.++++|+++|++||+||+++| |||+||+|++|+|.|+++|. .++...+|+.|+++|
T Consensus 446 ~~~eP~~~~~g~~f~~~~~~~~~~~~~~~av~~g~~~~~~~G-l~g~pv~~v~v~l~dg~~h~--~~s~~~~f~~a~~~a 522 (638)
T 3j25_A 446 LSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYS--PVSTPADFRMLAPIV 522 (638)
T ss_dssp EECCCCCSSCCCCCCCCCCSSSTTHHHHHHHHHHHHHHHHSS-SSCCCCCSCCCCCCCCCCSS--CSCCSHHHHHHHHHH
T ss_pred EEEecccCCCCcEEEeeeecccchhhhhhHHhhhHHHHHhcc-ccCCcccceEEEEEECcccC--CCCCHHHHHHHHHHH
Confidence 4 6775544 57788888899999999999999999999999 99999999999999999996 234456788999999
Q ss_pred HHHHHHhCCCeEEeeEEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhhcCchHHhhhhCCCce
Q 004467 623 IYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQA 702 (752)
Q Consensus 623 ~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~ 702 (752)
|++|+++|+|+||||||+|+|+||++++|+|+++|++|||+|+++++.+ +.++|+|++|++|||||+++|||+|||+|
T Consensus 523 ~~~a~~~a~p~LLEPi~~veI~vP~~~~G~V~~~L~~RRG~i~~~~~~~--~~~~i~a~vP~~e~~gy~~~Lrs~T~G~a 600 (638)
T 3j25_A 523 LEQVLKKAGTELLEPYLSFKIYAPQEYLSRAYNDAPKYCANIVDTQLKN--NEVILSGEIPARCIQEYRSDLTFFTNGRS 600 (638)
T ss_dssp HHHHHHHHCCBCCCCCTTCEEEEETTTHHHHHHHHHHTTCCCCCCCCCT--TEEEEECCCSSCCHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHCCCEEEcCcEEEEEEECHHHHHHHHHHHHhCCcEEeCeEecC--CeEEEEEEECHHHhhCHHHHHHhhCCCcE
Confidence 9999999999999999999999999999999999999999999998765 57899999999999999999999999999
Q ss_pred eeeeEecceeecCCCCCCCc
Q 004467 703 FPQCVFDHWDMMSSDPLEPG 722 (752)
Q Consensus 703 ~~~~~f~~y~~v~~d~~~~~ 722 (752)
+|+|+|+||++||+||++.+
T Consensus 601 ~~~~~f~~y~~vpgdp~~~~ 620 (638)
T 3j25_A 601 VCLTELKGYHVTTGEPVCQP 620 (638)
T ss_dssp EEECCCCCCCCCCSCCSCCC
T ss_pred EEEEEECceEECCCCccccc
Confidence 99999999999999999753
No 5
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.2e-106 Score=952.37 Aligned_cols=618 Identities=27% Similarity=0.417 Sum_probs=496.6
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC----ccccCCchhHhHhcceeccceEEEEEeeccchhccccC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG 91 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~----~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~ 91 (752)
++++|||+|+||+|||||||+++|++.+|.+.+ .|+ .+++|++++|++||+|+.+...++.|.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~--~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~----------- 73 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHK--IGETHEGASQMDWMEQEQDRGITITSAATTAAWE----------- 73 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC---------------------------CCSEEEEEET-----------
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccc--cccccCCceecccchhhhhcCceEeeeeEEEEEC-----------
Confidence 578999999999999999999999999888765 221 468999999999999999999999886
Q ss_pred CCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh--CCCCcchh
Q 004467 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW--GENFFDPA 162 (752)
Q Consensus 92 ~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld--g~~~~~~~ 162 (752)
++.+||+|||||.||..++.++++.+|++|+|||+++|++ .++.+.++|.++|+||+| ++++.+.+
T Consensus 74 -----~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~ 148 (693)
T 2xex_A 74 -----GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSV 148 (693)
T ss_dssp -----TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHH
T ss_pred -----CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHH
Confidence 7999999999999999999999999999999999999865 567778999999999999 44433333
Q ss_pred hc---cccccC------CCCccccCccee----------------------------eEechHHHHHHHhhccchhhHHH
Q 004467 163 TK---KWTTKN------TGSATCKRGFVQ----------------------------FCYEPIKQIINTCMNDQKDKLWP 205 (752)
Q Consensus 163 ~~---~~~~~~------~g~~~~~~~fv~----------------------------~~l~~i~~l~~~~~~~~~~~l~~ 205 (752)
.. .+...+ .+.+....++++ .......++++.+.+.+++.+++
T Consensus 149 ~~l~~~l~~~~~~~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~ 228 (693)
T 2xex_A 149 STLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEK 228 (693)
T ss_dssp HHHHHHHCCCEEESEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhCCCceeEEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHH
Confidence 21 111100 110000011111 11112235778888889999999
Q ss_pred HHHHcCCCCChhhHhhchHHHHHHHH-hccccc----------hHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccc
Q 004467 206 MLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYAN 274 (752)
Q Consensus 206 ~l~~l~~~l~~~~~~~~~~~l~~~~~-~~~~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~ 274 (752)
|++. ..++.+++. ..+.+.+. ..++|+ ++.||+++++++|+|.+++.++. + ++..+. ..
T Consensus 229 ~l~~--~~~~~~~~~---~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~---~-~~~~~~-~~ 298 (693)
T 2xex_A 229 YLGD--EEISVSELK---EAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIG---H-RASNPE-EE 298 (693)
T ss_dssp HHTT--CCCCHHHHH---HHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEE---E-ETTEEE-EE
T ss_pred HhcC--CCCCHHHHH---HHHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhcccccc---c-CCCccc-cc
Confidence 9985 677776663 33444443 467786 68999999999999987654332 1 111111 22
Q ss_pred cccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeecc
Q 004467 275 AIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVED 354 (752)
Q Consensus 275 ~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~e 354 (752)
....|++++||+++|||++.+++.|+ ++|+|||||+|++||+|++. +.++ .++|.+|+.++|++++++++
T Consensus 299 ~~~~~~~~~p~~a~VfK~~~d~~~g~-~~~~RV~sG~l~~g~~v~~~----~~~~-----~~~v~~l~~~~g~~~~~v~~ 368 (693)
T 2xex_A 299 VIAKADDSAEFAALAFKVMTDPYVGK-LTFFRVYSGTMTSGSYVKNS----TKGK-----RERVGRLLQMHANSRQEIDT 368 (693)
T ss_dssp EEECSCTTSCCEEEEEEEEEETTTEE-EEEEEEEESEEETTEEEEET----TTTE-----EEEECCEEEECSSCEEECSE
T ss_pred eeecCCCCCceEEEEEEeeecCCCce-EEEEEEEeeeEecCCEEEec----CCCc-----eEEeceEEEEeCCCceEccc
Confidence 45678889999999999999999887 99999999999999999954 2232 37999999999999999999
Q ss_pred ccCCCEEEEeccccccccce-eeccCCCCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEc-
Q 004467 355 VPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE- 432 (752)
Q Consensus 355 a~AGdIvai~Gl~~~~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~- 432 (752)
|.|||||+|.|++++ .+| |||+.. .+.+++++.++ +|+++++|+|++++|.+||.++|++|++|||+|++..+
T Consensus 369 ~~aGdI~~i~gl~~~--~~GdTl~~~~--~~~~~~~~~~~-~Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~~~~~ 443 (693)
T 2xex_A 369 VYSGDIAAAVGLKDT--GTGDTLCGEK--NDIILESMEFP-EPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDE 443 (693)
T ss_dssp EETTCEEEEESCSSC--CTTCEEEETT--CCEECCCCSSC-SCSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEEEC--
T ss_pred cCcCCEEEEeCcccC--ccCCEEecCC--CccccCCcCCC-CceEEEEEEeCCchhHHHHHHHHHHHHhhCCeEEEEEcC
Confidence 999999999999987 556 999887 66788899887 89999999999999999999999999999999999986
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhhcCCCcEEEEeCcEEEEEeecccccceeEEeecCCCceEEEEEEEeCChhhHHHHH
Q 004467 433 ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAID 512 (752)
Q Consensus 433 etge~il~g~GelhLei~~~rL~~~f~~~vev~~s~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~ePl~~~~~~~i~ 512 (752)
||||++|+|||||||||+++||+++| |+++.+++|+|+|||||.++++. .++|++ |
T Consensus 444 et~e~il~g~Gelhlei~~~rL~~~~--~v~v~~~~p~V~yrEti~~~~~~------~~~~~k----------------q 499 (693)
T 2xex_A 444 ETGQVIIGGMGELHLDILVDRMKKEF--NVECNVGAPMVSYRETFKSSAQV------QGKFSR----------------Q 499 (693)
T ss_dssp -CCCEEEEESSHHHHHHHHHHHHHHS--CCCEEECCCEECCEEEESSCEEE------EEEEEE----------------C
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHHh--CceEEEeCCeEEEEEEeccccce------eEeecc----------------c
Confidence 89999999999999999999999999 99999999999999999987643 333443 4
Q ss_pred cCCCCCCCChHHHHHHhhhhcCCchhccCcEEE-eccCCCC-CceEEecccCccchHHHHHHHHHHHHHHHHcCCcCCCC
Q 004467 513 DGRIGPRDDPKARSKILSEEFGWDKDLAKKIWC-FGPETTG-PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEEN 590 (752)
Q Consensus 513 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~-~~P~~~~-~n~~~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~~p 590 (752)
+|+. +||+. ||. ++|.+.| +|.|.+.+.|+.++++|+++|++||+||+++|||||+|
T Consensus 500 ~gg~--------------~~~~~-------v~~~~ePl~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~p 558 (693)
T 2xex_A 500 SGGR--------------GQYGD-------VHIEFTPNETGAGFEFENAIVGGVVPREYIPSVEAGLKDAMENGVLAGYP 558 (693)
T ss_dssp TTSS--------------CEEEE-------EEEEEEECCTTCCCEEEECCCTTSSCGGGHHHHHHHHHHHHHTCSSSSCC
T ss_pred cCCC--------------CceEE-------EEEEEEECCCCCCCEEEecCCCCcCCHHHHHHHHHHHHHHHhcCCccCCc
Confidence 4432 34443 554 5554333 68999999999999999999999999999999999999
Q ss_pred eeeeEEEEEeeeecc-cccccCCCchHHHHHHHHHHHHHhCCCeEEeeEEEEEEEecCcccccHHHHhhhhccccccccc
Q 004467 591 MRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQ 669 (752)
Q Consensus 591 v~~v~v~l~d~~~~~-d~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~ 669 (752)
|+||+|+|+|+++|. ||++. +|+.|+++||++|+++|+|+||||||+|+|+||++++|+|+++|++|||+|+++++
T Consensus 559 v~~v~v~l~dg~~h~vds~~~---~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~ 635 (693)
T 2xex_A 559 LIDVKAKLYDGSYHDVDSSEM---AFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEP 635 (693)
T ss_dssp BCSEEEEEEEEECCTTTCCHH---HHHHHHHHHHHHHHTTSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEE
T ss_pred eeeEEEEEEeccccCCCCCHH---HHHHHHHHHHHHHHHhcCCEEEeeeEEEEEEEcHHHHHHHHHHHHhCCcEeecccc
Confidence 999999999999997 65543 58899999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCcEEEEEEecchhhcCchHHhhhhCCCceeeeeEecceeecCCCCCCCchHHHHHHHHH
Q 004467 670 RPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADI 732 (752)
Q Consensus 670 ~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~d~~~~~~~~~~~~~~~ 732 (752)
.++ .+.|+|++|++|||||+++|||+|+|+|+|+|+|+||+++|+++ +++++++.
T Consensus 636 ~~~--~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~------~~~i~~~~ 690 (693)
T 2xex_A 636 RGN--AQVVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAEVPKSI------AEDIIKKN 690 (693)
T ss_dssp ETT--EEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEECCHHH------HHHHHHHH
T ss_pred cCC--eEEEEEEeCHHHHHhHHHHhHHhcCCceEEEEEeCcceECChhH------HHHHHHHh
Confidence 764 78999999999999999999999999999999999999999986 88988763
No 6
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=1.2e-106 Score=952.21 Aligned_cols=615 Identities=28% Similarity=0.429 Sum_probs=450.4
Q ss_pred ccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCC----CccccCCchhHhHhcceeccceEEEEEeeccchhcccc
Q 004467 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG----DVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYK 90 (752)
Q Consensus 15 ~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g----~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~ 90 (752)
.++++|||+|+||+|||||||+++|++.+|.+.+ .| ..+++|++++|++||+|+.+...++.|.
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~--~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~---------- 75 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHK--IGEVHEGAATMDFMEQERERGITITAAVTTCFWK---------- 75 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC------------------------------CCEEEEEET----------
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcc--cceecCCceeccCchhhhhcccccccceEEEEEC----------
Confidence 4578999999999999999999999999988765 22 2468999999999999999999999886
Q ss_pred CCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh--CCCCcch
Q 004467 91 GERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW--GENFFDP 161 (752)
Q Consensus 91 ~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld--g~~~~~~ 161 (752)
++.+||+|||||.||..++.++++.+|++|+|||+++|++ .++.+.++|.++|+||+| ++++.+.
T Consensus 76 ------~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~ 149 (691)
T 1dar_A 76 ------DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLV 149 (691)
T ss_dssp ------TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHH
T ss_pred ------CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHH
Confidence 7999999999999999999999999999999999999876 566778999999999999 4444333
Q ss_pred hhc---cccccC------CCCccccCccee----------------------------eEechHHHHHHHhhccchhhHH
Q 004467 162 ATK---KWTTKN------TGSATCKRGFVQ----------------------------FCYEPIKQIINTCMNDQKDKLW 204 (752)
Q Consensus 162 ~~~---~~~~~~------~g~~~~~~~fv~----------------------------~~l~~i~~l~~~~~~~~~~~l~ 204 (752)
+.. .+...+ ++.+....++++ .......++++.+.+.++++++
T Consensus 150 ~~~l~~~l~~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e 229 (691)
T 1dar_A 150 IRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIML 229 (691)
T ss_dssp HHHHHHTTCCCEEECEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHhCCCccceeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHH
Confidence 321 111100 111011111111 1112234678888889999999
Q ss_pred HHHHHcCCCCChhhHhhchHHHHHHHH-hccccc----------hHHHHHHHHhcCCCchhhhhhhhhcccCCCCccccc
Q 004467 205 PMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYA 273 (752)
Q Consensus 205 ~~l~~l~~~l~~~~~~~~~~~l~~~~~-~~~~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~ 273 (752)
+|++. ..++.+++. ..+.+.+. ..++|+ ++.||+++++++|+|.+++.++... + ..+
T Consensus 230 ~~l~~--~~~~~~~~~---~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~----~-~~~-- 297 (691)
T 1dar_A 230 KYLEG--EEPTEEELV---AAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTT----P-EGE-- 297 (691)
T ss_dssp HHHHT--CCCCHHHHH---HHHHHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEEC----S-SSC--
T ss_pred HHHCC--CCCCHHHHH---HHHHHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhhcccccccC----C-Ccc--
Confidence 99986 777777663 23444433 467776 6899999999999998765433211 1 111
Q ss_pred ccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeec
Q 004467 274 NAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVE 353 (752)
Q Consensus 274 ~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ 353 (752)
.....|++++||+++|||++.+++.|+ ++|+|||||+|++||+|++.. .+. .+++.+|+.++|+++++++
T Consensus 298 ~~~~~~~~~~p~~~~Vfk~~~d~~~G~-~~~~RV~sG~l~~g~~v~~~~----~~~-----~~~v~~l~~~~g~~~~~v~ 367 (691)
T 1dar_A 298 VVEIHPDPNGPLAALAFKIMADPYVGR-LTFIRVYSGTLTSGSYVYNTT----KGR-----KERVARLLRMHANHREEVE 367 (691)
T ss_dssp EEEECCCTTSCCEEEEEEEEEETTTEE-EEEEEEEESEEESSCEEEETT----TTE-----EEECCEEEEECSSCEEEES
T ss_pred ccccccCCCCCcEEEEEEEEEcCCCCc-EEEEEEeeeeEecCCEEEecC----CCc-----EEEEceEEEEeCCCceEcc
Confidence 235567889999999999999999887 999999999999999999542 232 3799999999999999999
Q ss_pred cccCCCEEEEeccccccccce-eeccCCCCCc-cccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEE
Q 004467 354 DVPCGNTVAMVGLDQFITKNA-TLTNEKEVDA-HPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTI 431 (752)
Q Consensus 354 ea~AGdIvai~Gl~~~~~~tg-TL~~~~~~~~-~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~ 431 (752)
+|.|||||+|.|++++ .+| |||+.. .+ .+++++.++ +|+++++|+|++++|.+||.++|++|++|||+|+++.
T Consensus 368 ~~~aGdI~~i~gl~~~--~~Gdtl~~~~--~~~~~l~~~~~~-~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~ 442 (691)
T 1dar_A 368 ELKAGDLGAVVGLKET--ITGDTLVGED--APRVILESIEVP-EPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVST 442 (691)
T ss_dssp EEETTCEEEEECCSSC--CTTCEEEETT--CCCCBCC---------------------------------CCCCSCEEEC
T ss_pred eecCCCEEEEeCcccC--ccCCEEecCC--CcccccCCCCCC-CceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEEEE
Confidence 9999999999999987 566 999877 55 778888887 8999999999999999999999999999999999998
Q ss_pred c-CCCcEEEEecchhhHHHHHHHHHhhcCCCcEEEEeCcEEEEEeecccccceeEEeecCCCceEEEEEEEeCChhhHHH
Q 004467 432 E-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEA 510 (752)
Q Consensus 432 ~-etge~il~g~GelhLei~~~rL~~~f~~~vev~~s~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~ePl~~~~~~~ 510 (752)
+ ||||++|+|||||||||+++||+++| |+++.+++|+|+|||||.++++. .++|++
T Consensus 443 ~~et~e~i~~g~Gelhlei~~~rL~~~~--~v~v~~~~p~V~yrEti~~~~~~------~~~~~k--------------- 499 (691)
T 1dar_A 443 HPETGQTIISGMGELHLEIIVDRLKREF--KVDANVGKPQVAYRETITKPVDV------EGKFIR--------------- 499 (691)
T ss_dssp -----CEEEEESCCC---------CCCE--EEBTTTBCCCBCCEEECSSCEEE------EEEEEE---------------
T ss_pred cCCCCcEEEEeCCHHHHHHHHHHHHHhh--CceEEEeCCeEEEEEeeccceee------eeeecc---------------
Confidence 6 89999999999999999999999999 99999999999999999987744 333433
Q ss_pred HHcCCCCCCCChHHHHHHhhhhcCCchhccCcEEE-eccCCCC-CceEEecccCccchHHHHHHHHHHHHHHHHcCCcCC
Q 004467 511 IDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWC-FGPETTG-PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAE 588 (752)
Q Consensus 511 i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~-~~P~~~~-~n~~~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~ 588 (752)
|+|+. +||+. ||. ++|.+.| +|.|.+.+.|+.++++|+++|++||+||+++|||||
T Consensus 500 -q~gg~--------------~~~~~-------v~~~~ePl~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g 557 (691)
T 1dar_A 500 -QTGGR--------------GQYGH-------VKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIG 557 (691)
T ss_dssp -CCSSS--------------CEEEE-------EEEEEEECCTTCCEEEEECCCTTSSCTTTHHHHHHHHHHHTTSCTTTS
T ss_pred -ccCCC--------------CceEE-------EEEEEEECCCCCCCEEeecccCCcCcHHHHHHHHHHHHHHHhcCCccC
Confidence 44432 34443 554 5554333 588999999999999999999999999999999999
Q ss_pred CCeeeeEEEEEeeeecc-cccccCCCchHHHHHHHHHHHHHhCCCeEEeeEEEEEEEecCcccccHHHHhhhhccccccc
Q 004467 589 ENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEE 667 (752)
Q Consensus 589 ~pv~~v~v~l~d~~~~~-d~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~ 667 (752)
+||+||+|+|+|+++|. ||++. +|+.|+++||++|+++|+|+||||||+|+|+||++++|+|+++|++|||+|+++
T Consensus 558 ~pv~~v~v~l~dg~~h~vds~~~---~f~~a~~~a~~~a~~~a~~~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~ 634 (691)
T 1dar_A 558 FPVVDIKVTLYDGSYHEVDSSEM---AFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGM 634 (691)
T ss_dssp CCBCSEEEEEEEECCCTTTBCHH---HHHHHHHHHHHHHHHTSCCEEEEEEEEEEEEECTTTTTHHHHHHHHTTCCEEEE
T ss_pred CceeeEEEEEEeeeccccCcchH---HHHHHHHHHHHHHHHHcCCEEeeceEEEEEEEcHHHHhHHHHHHHHCCceeecc
Confidence 99999999999999997 66553 588999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcEEEEEEecchhhcCchHHhhhhCCCceeeeeEecceeecCCCCCCCchHHHHHHH
Q 004467 668 MQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVA 730 (752)
Q Consensus 668 ~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~d~~~~~~~~~~~~~ 730 (752)
++.++ .+.|+|++|++|||||+++|||+|+|+|+|+|+|+||+++|+++ ++++++
T Consensus 635 ~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~------~~~i~~ 689 (691)
T 1dar_A 635 EPRGN--AQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQV------QEKLIK 689 (691)
T ss_dssp EEETT--EEEEEEEEETTTSSSHHHHHHHHTTTCCEEEEEEEEEEECCHHH------HHHHHC
T ss_pred eecCC--eEEEEEEecHHHHhhHHHHHHHhcCCceEEEEEeCcceECChhH------HHHHHh
Confidence 98764 79999999999999999999999999999999999999999985 777764
No 7
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=1.4e-99 Score=889.49 Aligned_cols=594 Identities=23% Similarity=0.333 Sum_probs=505.9
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC----ccccCCchhHhHhcceeccceEEEEEeeccchhccccC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG 91 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~----~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~ 91 (752)
.++.|||+|+||+|||||||+++|++..+.+.. .|+ .+++|+.+.|++||||+.+....+.|.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~--~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~----------- 72 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKER--RGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR----------- 72 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSS--CCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET-----------
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCc--cceecCCcccccCCHHHHhcCCeEEecceEEeeC-----------
Confidence 467999999999999999999999998887654 343 368999999999999999999988885
Q ss_pred CCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhhCC-CCcchhh
Q 004467 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLWGE-NFFDPAT 163 (752)
Q Consensus 92 ~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkldg~-~~~~~~~ 163 (752)
++.+||+|||||.+|..++.++++.+|++++|+|+.+|+. ..+...++|.++++||+|.. .+.+...
T Consensus 73 -----~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~~~~~~~~~ 147 (665)
T 2dy1_A 73 -----GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKGGDYYALLE 147 (665)
T ss_dssp -----TEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGCCCHHHHHH
T ss_pred -----CEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchhhhHHHHHH
Confidence 7899999999999999999999999999999999999876 56667899999999999954 1111111
Q ss_pred ---ccccccC------CCCccccC-------------------------cceeeEechHHHHHHHhhccchhhHHHHHHH
Q 004467 164 ---KKWTTKN------TGSATCKR-------------------------GFVQFCYEPIKQIINTCMNDQKDKLWPMLQK 209 (752)
Q Consensus 164 ---~~~~~~~------~g~~~~~~-------------------------~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~ 209 (752)
..+. .+ .+.+.... .|.+....+..++++.+.+.+++++++|++.
T Consensus 148 ~l~~~l~-~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~ 226 (665)
T 2dy1_A 148 DLRSTLG-PILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEG 226 (665)
T ss_dssp HHHHHHC-SEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHhC-CcceEEeeecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCC
Confidence 1122 00 00000001 1111222345578888888999999999985
Q ss_pred cCCCCChhhHhhchHHHHHHHH-hccccc----------hHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccc
Q 004467 210 LGVTMKSEEKDLMGKALMKRVM-QTWLPA----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRN 278 (752)
Q Consensus 210 l~~~l~~~~~~~~~~~l~~~~~-~~~~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~ 278 (752)
..++.+++. ..+.+.++ ..++|+ ++.||+++++++|+|.+.
T Consensus 227 --~~l~~~~~~---~~~~~~~~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~----------------------- 278 (665)
T 2dy1_A 227 --EEVTGEALE---KAFHEAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTER----------------------- 278 (665)
T ss_dssp --CCCCHHHHH---HHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCHHHH-----------------------
T ss_pred --CCCCHHHHH---HHHHHHHHhCCeeEEEEeecccCcCHHHHHHHHHHhCCCcccc-----------------------
Confidence 778777763 33444444 356674 589999999999999542
Q ss_pred cCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCC
Q 004467 279 CDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCG 358 (752)
Q Consensus 279 ~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AG 358 (752)
++++||+++|||++.+++.|+ ++++|||||+|++||+|++.+ . .++|.+|+.++|++.+++++|.||
T Consensus 279 -~~~~p~~~~V~k~~~d~~~G~-~~~~rV~sG~l~~g~~v~~~~------~-----~~~v~~l~~~~g~~~~~v~~a~aG 345 (665)
T 2dy1_A 279 -FGDGPPLAKVFKVQVDPFMGQ-VAYLRLYRGRLKPGDSLQSEA------G-----QVRLPHLYVPMGKDLLEVEEAEAG 345 (665)
T ss_dssp -HCSCSCEEEEEEEEEETTTEE-EEEEEEEESEECTTEEEBCTT------S-----CEEESSEEEEETTEEEEESCEETT
T ss_pred -CCCCCeEEEEEEEEEcCCCCe-EEEEEEcccEEecCCEEEcCC------C-----eEEEeEEEEEeCCCeeECCEECCC
Confidence 146899999999999999887 899999999999999999542 1 269999999999999999999999
Q ss_pred CEEEEeccccccccce-eeccCCCCCc--cccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEc-CC
Q 004467 359 NTVAMVGLDQFITKNA-TLTNEKEVDA--HPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ES 434 (752)
Q Consensus 359 dIvai~Gl~~~~~~tg-TL~~~~~~~~--~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~-et 434 (752)
|||++.|++++ .+| ||++.. .+ .+++++.++ .|+++++|+|.+++|.++|.++|++|.+|||+|++..+ +|
T Consensus 346 ~iv~i~gl~~~--~~Gdtl~~~~--~~~~~~l~~~~~~-~P~~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~~~et 420 (665)
T 2dy1_A 346 FVLGVPKAEGL--HRGMVLWQGE--KPESEEVPFARLP-DPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEET 420 (665)
T ss_dssp CEEEESSCTTC--CTTCEEESSS--CCCGGGSCCCCCC-CCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTT
T ss_pred CEEEEeCCccC--ccCCEEecCC--CccccccCCCCCC-CceEEEEEEECChhhHHHHHHHHHHHHHhCCeEEEEEcCCC
Confidence 99999999987 566 999877 44 678888887 89999999999999999999999999999999999997 89
Q ss_pred CcEEEEecchhhHHHHHHHHHhhcCCCcEEEEeCcEEEEEeecccccceeEEeecCCCceEEEEEEEeCChhhHHHHHcC
Q 004467 435 GEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDG 514 (752)
Q Consensus 435 ge~il~g~GelhLei~~~rL~~~f~~~vev~~s~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~ePl~~~~~~~i~~g 514 (752)
||++|+|||||||||+++||+ +| |+++.+++|+|+|||||.++++ ..++|++ ++|
T Consensus 421 ~e~i~~g~Gelhlei~~~rl~-~~--~v~v~~~~p~V~yrEti~~~~~------~~~~~~k----------------~~g 475 (665)
T 2dy1_A 421 GELLLWGHGELHLATAKERLQ-DY--GVEVEFSVPKVPYRETIKKVAE------GQGKYKK----------------QTG 475 (665)
T ss_dssp CCEEEEESSHHHHHHHHHHHH-HT--TCCEEEECCCCCCEEEESSCEE------EEEEEEE----------------EET
T ss_pred CCEEEEecCHHHHHHHHHHHH-HC--CceEEEeCCEEEEEEeecccee------eeeeccc----------------ccC
Confidence 999999999999999999999 99 9999999999999999998763 3445555 555
Q ss_pred CCCCCCChHHHHHHhhhhcCCchhccCcEEE-eccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCcCCCCeee
Q 004467 515 RIGPRDDPKARSKILSEEFGWDKDLAKKIWC-FGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRG 593 (752)
Q Consensus 515 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~-~~P~~~~~n~~~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~ 593 (752)
+. +||+. ||. ++|.+ +|.|.+.+.|+.++++|+++|++||+||+++|||||+||+|
T Consensus 476 g~--------------g~~~~-------v~~~~eP~~--g~~f~~~~~~g~~~~~~~~~v~~g~~~a~~~G~l~g~pv~~ 532 (665)
T 2dy1_A 476 GH--------------GQYGD-------VWLRLEPAS--EYGFEWRITGGVIPSKYQEAIEEGIKEAAKKGVLAGFPVMG 532 (665)
T ss_dssp TE--------------EEEEE-------EEEEEEECS--SCEEEECCCTTSSCGGGHHHHHHHHHHHHTSCTTTSCCBCS
T ss_pred CC--------------cceEE-------EEEEEEECC--CCEEeeeccCCcchHHHHHHHHHHHHHHHhcCCccCCceee
Confidence 42 45654 676 77765 58899999999999999999999999999999999999999
Q ss_pred eEEEEEeeeecc-cccccCCCchHHHHHHHHHHHHHhCCCeEEeeEEEEEEEecCcccccHHHHhhhhccccccccccCC
Q 004467 594 ICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPG 672 (752)
Q Consensus 594 v~v~l~d~~~~~-d~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~ 672 (752)
|+|+|+|+++|. |+++. +|+.|+++||++|+++|+|+||||||+|+|+||++++|+|+++|++|||+|+++++.+
T Consensus 533 v~v~l~dg~~h~~ds~~~---~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~g~v~~~l~~rrG~i~~~~~~~- 608 (665)
T 2dy1_A 533 FKAIVYNGSYHEVDSSDL---AFQIAASLAFKKVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEG- 608 (665)
T ss_dssp EEEEEEEEECCTTTBCHH---HHHHHHHHHHHHHHHHSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEET-
T ss_pred EEEEEEeeeccCCCCCHH---HHHHHHHHHHHHHHhhCCCEEEeeeEEEEEEECHHHHHHHHHHHHHCCCEEeCcEecC-
Confidence 999999999997 66544 5789999999999999999999999999999999999999999999999999999875
Q ss_pred CCcEEEEEEecchhhcCchHHhhhhCCCceeeeeEecceeecCCCCCCCchHHHHHHHHHH
Q 004467 673 TPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIR 733 (752)
Q Consensus 673 ~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~d~~~~~~~~~~~~~~~r 733 (752)
+++.|+|++|++|||||+++|||+|+|+|+|+|+|+||+++|+++ +++++++.+
T Consensus 609 -~~~~i~a~~P~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~~~~------~~~~~~~~~ 662 (665)
T 2dy1_A 609 -ALSVVHAEVPLAEVLEYYKALPGLTGGAGAYTLEFSHYAEVPPHL------AQRIVQERA 662 (665)
T ss_dssp -TEEEEEEEEEGGGCTTHHHHHHHHHTTCCEEEEEEEEEEECCHHH------HHHHHHHHH
T ss_pred -CeEEEEEEECHHHHhhHHHHhHhhcCCcEEEEEEeCceeECCccH------HHHHHHHHh
Confidence 589999999999999999999999999999999999999999986 889988854
No 8
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=2.3e-76 Score=676.20 Aligned_cols=409 Identities=22% Similarity=0.339 Sum_probs=304.4
Q ss_pred hhcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC--------ccccCCchhHhHhcceeccceEEEEEeecc
Q 004467 12 IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD--------VRMTDTRADEAERGITIKSTGISLYYEMTD 83 (752)
Q Consensus 12 ~~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~--------~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~ 83 (752)
+.+..+++|||||+||+|||||||+|+||+++|.|++ +|+ .++||++++||||||||+++.+++.|+
T Consensus 24 ~~~e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~--~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~--- 98 (548)
T 3vqt_A 24 LEREAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQM--AGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYR--- 98 (548)
T ss_dssp HHHHHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHH--HHHHHHC--------------------CTTTEEEEEET---
T ss_pred hhhcccccceEEEEeCCCCCHHHHHHHHHHhcCcccc--cceeecCccccccccCChHHHHHCCCcEeeceEEEEEC---
Confidence 4445678999999999999999999999999999977 332 469999999999999999999999996
Q ss_pred chhccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh--
Q 004467 84 DALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW-- 154 (752)
Q Consensus 84 ~~~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld-- 154 (752)
+|+|||||||||+||+.||.++|+++|+||+||||++||+ ++|.++++|+++||||||
T Consensus 99 -------------~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 99 -------------DRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDRE 165 (548)
T ss_dssp -------------TEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSC
T ss_pred -------------CEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccch
Confidence 8999999999999999999999999999999999999998 889999999999999999
Q ss_pred CCCCcchhhc---cccccC------CCCccccCcceeeEechHH---------------------HHHHHhhccchhhH-
Q 004467 155 GENFFDPATK---KWTTKN------TGSATCKRGFVQFCYEPIK---------------------QIINTCMNDQKDKL- 203 (752)
Q Consensus 155 g~~~~~~~~~---~~~~~~------~g~~~~~~~fv~~~l~~i~---------------------~l~~~~~~~~~~~l- 203 (752)
+++|++++.. ++...+ +|.+..+.++++++....+ ..++.......+..
T Consensus 166 ~ad~~~~~~~i~~~l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (548)
T 3vqt_A 166 ALHPLDVMADIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLR 245 (548)
T ss_dssp CCCHHHHHHHHHHHHTSEEEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHH
T ss_pred hcchhHhhhhhhhhcCCceEeEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhh
Confidence 7888877763 333221 4443334444443211100 00111111000000
Q ss_pred --HHHHHHcCCCCChhhHhhchHHHHHHHHhccccc----------hHHHHHHHHhcCCCchhhhhhhhhcccCCCCccc
Q 004467 204 --WPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPA----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQ 271 (752)
Q Consensus 204 --~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~~~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~ 271 (752)
..++...+.... .+.. +...++|+ ++.|||++++++|+|.+....
T Consensus 246 ~~~~l~~~~~~~~~-------~e~~---~~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~------------- 302 (548)
T 3vqt_A 246 MDLALLEEAGTPFD-------EERY---LKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAA------------- 302 (548)
T ss_dssp HHHHHHHHHCCCCC-------HHHH---HTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBS-------------
T ss_pred hHHHHHhhccCchh-------HHHH---HhCCcceeeecccccCcCHHHHHHHHHHhCCCCCCcccc-------------
Confidence 011111111111 1111 12456675 689999999999999643210
Q ss_pred ccccccccCCCCCeEEEEEEEeec---CCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCc
Q 004467 272 YANAIRNCDPNGPLMLYVSKMIPA---SDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKK 348 (752)
Q Consensus 272 ~~~~i~~~~~~~pl~~~V~Kv~~~---~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~ 348 (752)
... ..+.+.||.++|||+..+ ++.|+ ++|+|||||+|++||.|++.. .++ .+|+.+++.++|.+
T Consensus 303 --~~~-~~~~~~p~~a~vfKi~~~~~~~~~Gr-la~~RV~sG~l~~g~~v~~~~----~~~-----~~rv~~l~~~~g~~ 369 (548)
T 3vqt_A 303 --TRV-VEPGEEAFTGVVFKIQANMDKAHRDR-MAFLRICSGTFTRGMRLKHHR----TGK-----DVTVANATIFMAQD 369 (548)
T ss_dssp --SSE-ECTTCSSCEEEEEEEECC-------C-EEEEEEEESCEETTCEEEETT----TTE-----EEECTTCEECCCSS
T ss_pred --ccc-cCCCCcCceEEEEEEEccCCcCCCCe-EEEEEEecceecCCCEEEeec----ccc-----ccccchhhhhcccc
Confidence 000 113567999999999876 67787 999999999999999999643 333 37999999999999
Q ss_pred eeeeccccCCCEEEEeccccccccce-eeccCCCCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeE
Q 004467 349 QETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMV 427 (752)
Q Consensus 349 ~~~V~ea~AGdIvai~Gl~~~~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl 427 (752)
++++++|.|||||+|.|++++ .+| |||+.+ .+.+++++.++ +|+++++|+|+++.|.++|.++|++|+++||+.
T Consensus 370 ~~~v~~a~AGdIvai~gl~~~--~~GDTl~~~~--~~~~~~~i~~~-~P~~~~av~p~~~~d~~kl~~~L~~L~eed~~~ 444 (548)
T 3vqt_A 370 RTGVEEAFPGDIIGIPNHGTI--KIGDTFTESK--EVLKFVGIPNF-APEHFRRVRLKNPLKAKQLQKGLEQLAEEGAVQ 444 (548)
T ss_dssp CCSSCEECTTCEEEEECSSCC--CTTCEEESSS--SCCCBCCCEEE-CCSEEEEEEESCGGGHHHHHHHHHHHHHTTSSE
T ss_pred ccccCEEecCCEEEecCCccC--ccCCEecCCC--CccccCCCCCC-CCcceeeeeeCCchhHHHHHHHHHHhhhcCcee
Confidence 999999999999999999998 566 999987 67778888876 999999999999999999999999999999976
Q ss_pred EEEEcCCCcEEEEecchhhHHHHHHHHHhhcCCCcEEE-----EeCcEEEEEeeccccc
Q 004467 428 VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEII-----KSDPVVSFRETVLEKS 481 (752)
Q Consensus 428 ~v~~~etge~il~g~GelhLei~~~rL~~~f~~~vev~-----~s~p~V~yrETi~~~~ 481 (752)
.++.++|||++|+|||||||||+++||+++| |+++. ++.|+|+|||||...+
T Consensus 445 v~~~~et~e~il~g~GeLHLeI~~erL~~ey--~vev~~e~v~~~~P~V~YrEti~~~~ 501 (548)
T 3vqt_A 445 LFRPLVNNDYILGAVGVLQFDVIVARLADEY--GVDAVYEGVSTHTARWVYCEDKKIFA 501 (548)
T ss_dssp EEEESSSCCCEEEESSTHHHHHHHHHHHHHH--CCCEEEEECSCCEEEEEECSCHHHHH
T ss_pred EEEECCCCcEEEEEECHHHHHHHHHHHHHHh--CCCEEEeeccccCceEEecCCccchh
Confidence 5555599999999999999999999999999 99976 5789999999999865
No 9
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=8.4e-74 Score=656.15 Aligned_cols=476 Identities=26% Similarity=0.415 Sum_probs=365.6
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~ 95 (752)
.+++|||+|+||+|||||||+++|++.+|.+++...+ .+++|+++.||+||||++++.+++.|.. .++
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~-~~~~D~~~~ErerGITI~~~~~~~~~~~-----------~dg 70 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKR-EQLLDTLDVERERGITVKMQAVRMFYKA-----------KDG 70 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC------------------------CCCCSEEEEEEC-----------TTS
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCccccccc-ccccccchhhhcccceeeeeEEEEEEEc-----------CCC
Confidence 4679999999999999999999999999988764444 4799999999999999999999999962 123
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhhCCCCcchhhccccc
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLWGENFFDPATKKWTT 168 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkldg~~~~~~~~~~~~~ 168 (752)
..+.+||+|||||.||..++.++++.+|+||+||||++|++ .++...++|.++|+||+|....
T Consensus 71 ~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a---------- 140 (600)
T 2ywe_A 71 NTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSA---------- 140 (600)
T ss_dssp CEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTC----------
T ss_pred CeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCcccc----------
Confidence 46899999999999999999999999999999999999975 5566789999999999992111
Q ss_pred cCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHHhcccc-------chHHH
Q 004467 169 KNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLP-------ASSAL 241 (752)
Q Consensus 169 ~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~~~P-------~~~~L 241 (752)
+ .+ +....+.+.++.. ..+ +++ .++.|
T Consensus 141 -----------------~-----~~-------~v~~el~~~lg~~--~~~---------------vi~vSAktg~GI~~L 174 (600)
T 2ywe_A 141 -----------------D-----VD-------RVKKQIEEVLGLD--PEE---------------AILASAKEGIGIEEI 174 (600)
T ss_dssp -----------------C-----HH-------HHHHHHHHTSCCC--GGG---------------CEECBTTTTBSHHHH
T ss_pred -----------------C-----HH-------HHHHHHHHhhCCC--ccc---------------EEEEEeecCCCchHH
Confidence 0 00 0111222222221 111 122 25789
Q ss_pred HHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEc
Q 004467 242 LEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIM 321 (752)
Q Consensus 242 Ld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~ 321 (752)
++.+++++|+|.. ++++||.++||+++.+++.|. ++++||++|+|++||.|+++
T Consensus 175 le~I~~~lp~p~~-------------------------~~~~pl~~lV~~~~~d~~~G~-v~~~rV~sG~l~~Gd~I~~~ 228 (600)
T 2ywe_A 175 LEAIVNRIPPPKG-------------------------DPQKPLKALIFDSYYDPYRGA-VAFVRIFDGEVKPGDKIMLM 228 (600)
T ss_dssp HHHHHHHSCCCCC-------------------------CTTSCCEEEEEEEEEETTTEE-EEEEEEEESEECTTCEEEET
T ss_pred HHHHHHhcccccc-------------------------cccCCcceeEEEEeecccceE-EEEEEEEeCEEecCCEEEec
Confidence 9999999999831 467899999999999998886 99999999999999999986
Q ss_pred cCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEe-cc---ccccccce-eeccCCCCCccccccccccCCc
Q 004467 322 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-GL---DQFITKNA-TLTNEKEVDAHPIRAMKFSVSP 396 (752)
Q Consensus 322 ~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~-Gl---~~~~~~tg-TL~~~~~~~~~~~~~~~~~~~P 396 (752)
+. +. ..++.+++.+.+ +..+++++.||||+++. |+ +++ ++| ||++.+.+...+++++.++ +|
T Consensus 229 ~~----~~-----~~~v~~i~~~~~-~~~~v~~~~aGdi~~v~~gi~~~~~~--~~GDtl~~~~~~~~~~l~~~~~~-~P 295 (600)
T 2ywe_A 229 ST----GK-----EYEVTEVGAQTP-KMTKFDKLSAGDVGYIAASIKDVRDI--RIGDTITHAKNPTKEPVPGFQPA-KP 295 (600)
T ss_dssp TT----TE-----EEECCEEEEESS-SEEEESCEETTCEEEEESSCCCTTSS--CTTCEEEESSSCCSSCCSCCCCC-CC
T ss_pred cc----cc-----eEeeecccccCC-CceECCEEecCceeeeeccccchhhc--cCCCEEEeCCCccccccCCCCCC-Cc
Confidence 42 22 268999998876 58899999999999884 54 454 667 9998772111467888775 99
Q ss_pred eEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEcCCCcEEEEe-----cchhhHHHHHHHHHhhcCCCcEEEEeCcEE
Q 004467 397 VVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAG-----AGELHLEICLKDLQDDFMGGAEIIKSDPVV 471 (752)
Q Consensus 397 v~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~etge~il~g-----~GelhLei~~~rL~~~f~~~vev~~s~p~V 471 (752)
+++++++|.+..|.++|.++|++|.+|||+|+++ .||+|+++.| ||||||||+++||+++| |+++.+++|+|
T Consensus 296 ~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~-~et~~~l~~g~~~~~~G~lHlei~~erl~re~--~~~v~~~~P~V 372 (600)
T 2ywe_A 296 MVYAGIYPAEDTTYEELRDALEKYAINDAAIVYE-PESSPALGMGFRVGFLGLLHMEIVQERLEREY--GVKIITTAPNV 372 (600)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHTTCSSCEEE-EEEETTTEEEEEEEESSHHHHHHHHHHHHHHS--CCCEEECCCEE
T ss_pred EEEEEeeccccccHHHHHHHHHHHhhhCCEEEEE-ECCccccccceEEEeccHHHHHHHHHHHHhhc--CceEEEEeeeE
Confidence 9999999999999999999999999999999997 5788877777 99999999999999999 99999999999
Q ss_pred EEEeecccccceeEEeecCCCceEEEEEEEeCChhhHHHHHcCCCCCCCChHHHHHHhhhhcCCchhccCcEEEeccCCC
Q 004467 472 SFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETT 551 (752)
Q Consensus 472 ~yrETi~~~~~~~~~~~~~~~~~~i~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~P~~~ 551 (752)
+|||||.+.. +. +++ .
T Consensus 373 ~yreti~~~g----------~~----~~~----------------------------------------------~---- 388 (600)
T 2ywe_A 373 IYRVKKKFTD----------EV----IEV----------------------------------------------R---- 388 (600)
T ss_dssp CEEEEETTCS----------SC----EEE----------------------------------------------S----
T ss_pred EEEEEecCCC----------cE----EEE----------------------------------------------e----
Confidence 9999987421 00 111 0
Q ss_pred CCceEEecccCccchHHHHHHHHHHHHHHHHcCCcCCCCeeeeEEEEEeeeecccccccCCCchHHHHHHHHHHHHHhCC
Q 004467 552 GPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAK 631 (752)
Q Consensus 552 ~~n~~~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~d~~~~~~~~~~~a~~~a~~~a~~~a~ 631 (752)
| | +++|+.+ + . -
T Consensus 389 --~------------------------------p-~~~p~~~----------~----~---------------------~ 400 (600)
T 2ywe_A 389 --N------------------------------P-MDFPDNA----------G----L---------------------I 400 (600)
T ss_dssp --S------------------------------G-GGSCSCG----------G----G---------------------E
T ss_pred --C------------------------------h-hhCCCCC----------c----c---------------------c
Confidence 0 1 3456554 0 0 0
Q ss_pred CeEEeeEEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhh-cCchHHhhhhCCCceeeeeEecc
Q 004467 632 PRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES-FGFSGTLRAATSGQAFPQCVFDH 710 (752)
Q Consensus 632 ~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~ 710 (752)
+.||||||+++|.+|++|+|+|+++|++|||++.+++..++ ++..|+|.+|++|+ +||.++|||+|+|+|+|+++|+|
T Consensus 401 ~~llEP~~~~~i~vP~e~~G~v~~~~~~rrG~~~~~~~~~~-~~~~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~~~f~~ 479 (600)
T 2ywe_A 401 EYVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDP-NTVYLEYEMPLSEIIVDFHDKIKSISRGFASYDYEFIG 479 (600)
T ss_dssp EEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEEET-TEEEEEEEEEHHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ccccCCeEEEEEEecHHHHHHHHHHHHHcCcEEeccEEcCC-CEEEEEEEEcHHHHHhhHHHhhhhcCCCeEEEEEEecc
Confidence 37999999999999999999999999999999999998643 58899999999999 89999999999999999999999
Q ss_pred eeec---------CCCCCCC----------chHHHHHHHHHHH
Q 004467 711 WDMM---------SSDPLEP----------GTQAAQLVADIRK 734 (752)
Q Consensus 711 y~~v---------~~d~~~~----------~~~~~~~~~~~r~ 734 (752)
|+++ .++|.|. ....++++.+.+.
T Consensus 480 y~~~~~~~~~~~~ng~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (600)
T 2ywe_A 480 YRPSDLIKLTVLINKKPVDALSFIVHADRAQKFARRVAEKLRE 522 (600)
T ss_dssp EEECCEEEEEEEESSSBCGGGCEEEEGGGHHHHHHHHHHHHHH
T ss_pred ceEccccccccccCCCEeccchhhhhhHHHHHHHHHHHHHHHh
Confidence 9999 8888763 3467777777553
No 10
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=7.5e-72 Score=641.61 Aligned_cols=472 Identities=25% Similarity=0.410 Sum_probs=356.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
+++|||+|+||+|||||||+++|++.+|.+.+...+ .+++|++++||+||||+++..+++.|.. .+++
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~-~~~~D~~~~ErerGiTi~~~~~~~~~~~-----------~~g~ 69 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREME-AQVLDSMDLERERGITIKAQSVTLDYKA-----------SDGE 69 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC---------------------------CEEEEEEEC-----------TTSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCccccccc-ccccccchhhhcccceeeeeEEEEEEec-----------CCCC
Confidence 579999999999999999999999999988765444 4799999999999999999999999962 1234
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhhCCCCcchhhcccccc
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLWGENFFDPATKKWTTK 169 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkldg~~~~~~~~~~~~~~ 169 (752)
.+.+||+|||||.||..++.++++.+|+||+||||++|++ ..+...++|+++++||+|....
T Consensus 70 ~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a----------- 138 (599)
T 3cb4_D 70 TYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAA----------- 138 (599)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTC-----------
T ss_pred eEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccc-----------
Confidence 6899999999999999999999999999999999999976 5566789999999999992111
Q ss_pred CCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHHhcccc-------chHHHH
Q 004467 170 NTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLP-------ASSALL 242 (752)
Q Consensus 170 ~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~~~P-------~~~~LL 242 (752)
+ .+ +....+.+.++... .+ +++ .++.|+
T Consensus 139 ----------------~-----~~-------~v~~ei~~~lg~~~--~~---------------vi~vSAktg~GI~~Ll 173 (599)
T 3cb4_D 139 ----------------D-----PE-------RVAEEIEDIVGIDA--TD---------------AVRCSAKTGVGVQDVL 173 (599)
T ss_dssp ----------------C-----HH-------HHHHHHHHHTCCCC--TT---------------CEEECTTTCTTHHHHH
T ss_pred ----------------c-----HH-------HHHHHHHHHhCCCc--ce---------------EEEeecccCCCchhHH
Confidence 0 00 01112222222221 00 122 257899
Q ss_pred HHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEcc
Q 004467 243 EMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMG 322 (752)
Q Consensus 243 d~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~ 322 (752)
+.+.+++|+|.. ++++|+.++|++++.+++.|. ++++||++|+|++||.+.+++
T Consensus 174 ~~I~~~lp~p~~-------------------------~~~~p~~alI~d~~~d~~~G~-v~~~rV~sG~l~~Gd~v~~~~ 227 (599)
T 3cb4_D 174 ERLVRDIPPPEG-------------------------DPEGPLQALIIDSWFDNYLGV-VSLIRIKNGTLRKGDKVKVMS 227 (599)
T ss_dssp HHHHHHSCCCCC-------------------------CTTSCCEEEEEEEEEETTTEE-EEEEEEEESCEESSCEEEETT
T ss_pred HHHhhcCCCccc-------------------------cccCCceeeeeeccccccccE-EEEEEEEeCEEecCCEEEecc
Confidence 999999999831 467899999999999999887 999999999999999999864
Q ss_pred CCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEe-cc---ccccccce-eeccCCCCCccccccccccCCce
Q 004467 323 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-GL---DQFITKNA-TLTNEKEVDAHPIRAMKFSVSPV 397 (752)
Q Consensus 323 ~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~-Gl---~~~~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv 397 (752)
. +. ..++.+++.+.+. ..+++++.||||+++. |+ +++ .+| ||++.+.+...+++.+.++ +|+
T Consensus 228 ~----~~-----~~~v~~i~~~~~~-~~~~~~~~aGdi~~~~~gi~~~~~~--~~GDtl~~~~~~~~~~l~~~~~~-~P~ 294 (599)
T 3cb4_D 228 T----GQ-----TYNADRLGIFTPK-QVDRTELKCGEVGWLVCAIKDIHGA--PVGDTLTLARNPAEKALPGFKKV-KPQ 294 (599)
T ss_dssp T----CC-----EEECCEEEEESSS-EEECSEECTTCEEEEECCCSSGGGS--CTTCEEEESSSCCSSCCTTCCCC-CCC
T ss_pred c----cc-----eeEEeeeeeccCC-ceECCEEcCCCeeEeeccccccccC--ccCCEeeecCCccccccccccCC-Ccc
Confidence 2 22 2689999988765 8899999999999884 54 454 566 9998772222567777765 999
Q ss_pred EEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEcCCCcEEEEe-----cchhhHHHHHHHHHhhcCCCcEEEEeCcEEE
Q 004467 398 VRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAG-----AGELHLEICLKDLQDDFMGGAEIIKSDPVVS 472 (752)
Q Consensus 398 ~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~etge~il~g-----~GelhLei~~~rL~~~f~~~vev~~s~p~V~ 472 (752)
++++++|.+..|.++|.++|++|.++||+|.+. ++|+|+++.| ||+|||||+++||+++| |+++.+++|+|+
T Consensus 295 v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~-~et~~~l~~gfr~g~lG~lhlei~~erl~~e~--~~~~~~~~P~V~ 371 (599)
T 3cb4_D 295 VYAGLFPVSSDDYEAFRDALGKLSLNDASLFYE-PESSSALGFGFRCGFLGLLHMEIIQERLEREY--DLDLITTAPTVV 371 (599)
T ss_dssp EEEEEEESSGGGHHHHHHHHHHHHTTCSSCEEE-EEEETTTEEEEEEEESSHHHHHHHHHHHHHTS--CCCEEECCCEEC
T ss_pred eEEEEEecCccCHHHHHHHHHHHHhhCcEEEEE-eccccccccceEEEeccHHHHHHHHHHHHHHc--CceEEEEeeeEE
Confidence 999999999999999999999999999999997 6788877777 99999999999999999 999999999999
Q ss_pred EEeecccccceeEEeecCCCceEEEEEEEeCChhhHHHHHcCCCCCCCChHHHHHHhhhhcCCchhccCcEEEeccCCCC
Q 004467 473 FRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTG 552 (752)
Q Consensus 473 yrETi~~~~~~~~~~~~~~~~~~i~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~P~~~~ 552 (752)
||||+.+.+. +.+ . .|.
T Consensus 372 yreti~~g~~---------------~~~-----------~----------------------------------~p~--- 388 (599)
T 3cb4_D 372 YEVETTSREV---------------IYV-----------D----------------------------------SPS--- 388 (599)
T ss_dssp EEEEESSSCE---------------EEE-----------S----------------------------------SGG---
T ss_pred EEEEecCCce---------------EEe-----------c----------------------------------Chh---
Confidence 9999876320 000 0 010
Q ss_pred CceEEecccCccchHHHHHHHHHHHHHHHHcCCcCCCCeeeeEEEEEeeeecccccccCCCchHHHHHHHHHHHHHhCCC
Q 004467 553 PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKP 632 (752)
Q Consensus 553 ~n~~~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~d~~~~~~~~~~~a~~~a~~~a~~~a~~ 632 (752)
++|..+ . -+
T Consensus 389 -----------------------------------~~p~~~--------------------~----------------~~ 397 (599)
T 3cb4_D 389 -----------------------------------KLPAVN--------------------N----------------IY 397 (599)
T ss_dssp -----------------------------------GSCCGG--------------------G----------------EE
T ss_pred -----------------------------------hCCCcc--------------------c----------------cc
Confidence 111100 0 03
Q ss_pred eEEeeEEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhh-cCchHHhhhhCCCceeeeeEecce
Q 004467 633 RLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES-FGFSGTLRAATSGQAFPQCVFDHW 711 (752)
Q Consensus 633 ~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y 711 (752)
.||||||+++|.+|++|+|.|+++|++|||++++++..+ ++..|+|.+|++|+ +||.++|||+|+|+|+|+++|+||
T Consensus 398 ~llEP~~~~~i~~P~e~~G~v~~~~~~rrG~~~~~~~~~--~~~~i~~~~P~~e~~~~~~~~l~s~T~G~~~~~~~~~~y 475 (599)
T 3cb4_D 398 ELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHG--NQVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRF 475 (599)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEECCT--TEEEEEEEEEHHHHHTTTHHHHHHHTTSCCEEEEEEEEE
T ss_pred hhhccceEEEEEeCHHHHHHHHHHHHHcCcEEeCcEecC--CeEEEEEEecHHHHHHHHHHhhhhcCCcEEEEEEEecCc
Confidence 799999999999999999999999999999999999865 38899999999999 899999999999999999999999
Q ss_pred eec---------CCCCCCC----------chHHHHHHHHHHH
Q 004467 712 DMM---------SSDPLEP----------GTQAAQLVADIRK 734 (752)
Q Consensus 712 ~~v---------~~d~~~~----------~~~~~~~~~~~r~ 734 (752)
+++ .++|.|. ....++++.+.+.
T Consensus 476 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (599)
T 3cb4_D 476 QASDMVRVDVLINGERVDALALITHRDNSQNRGRELVEKMKD 517 (599)
T ss_dssp EECCEEEEEEEETTEEEEEEEEEEEGGGHHHHHHHHHHHHHH
T ss_pred eEecccccccccCCcEecccceeccHHHHHHHHHHHHHHHHh
Confidence 999 6766652 3467777777553
No 11
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=6.2e-59 Score=530.03 Aligned_cols=403 Identities=20% Similarity=0.299 Sum_probs=277.8
Q ss_pred ccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCC--------CccccCCchhHhHhcceeccceEEEEEeeccchh
Q 004467 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG--------DVRMTDTRADEAERGITIKSTGISLYYEMTDDAL 86 (752)
Q Consensus 15 ~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g--------~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~ 86 (752)
..+++|||+|+||+|||||||+++|++.+|.+.+ .| ..+++|+++.|++||+|+.+....+.|.
T Consensus 9 ~~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~--~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~------ 80 (529)
T 2h5e_A 9 EVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQT--AGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH------ 80 (529)
T ss_dssp HHHTEEEEEEEECTTSSHHHHHHHHHHSCC---------------------------------CCTTEEEEEET------
T ss_pred hhcCCCEEEEECCCCChHHHHHHHHHhhcCCccc--cceeecCccccceeeccchhcccCCcceeeeEEEEEEC------
Confidence 3467999999999999999999999998887754 22 2468999999999999999999999986
Q ss_pred ccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh--CCC
Q 004467 87 KSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW--GEN 157 (752)
Q Consensus 87 ~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld--g~~ 157 (752)
++.+||+|||||.||..++.++++.+|++|+|+|+..|++ .++...++|.++|+||+| +++
T Consensus 81 ----------~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 81 ----------DCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp ----------TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSC
T ss_pred ----------CeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCcccc
Confidence 7999999999999999999999999999999999999876 455567999999999999 333
Q ss_pred Ccchhh---cccccc------CCCCccccCcceeeEe-----------------chHH-----HHHHHhhccchhhHHHH
Q 004467 158 FFDPAT---KKWTTK------NTGSATCKRGFVQFCY-----------------EPIK-----QIINTCMNDQKDKLWPM 206 (752)
Q Consensus 158 ~~~~~~---~~~~~~------~~g~~~~~~~fv~~~l-----------------~~i~-----~l~~~~~~~~~~~l~~~ 206 (752)
..+.+. ..+... +++.+..+.++.++.. .++. .+.+. . ++..++++
T Consensus 151 ~~~~~~~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~-~--~~~~~~~~ 227 (529)
T 2h5e_A 151 PMELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAA-V--GEDLAQQL 227 (529)
T ss_dssp HHHHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHH-H--CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHh-h--CHHHHHHh
Confidence 322222 111110 0111011111111100 0110 11111 1 22334444
Q ss_pred HHHcCCCCChhhHhhchHHHHHHHH-hccccc----------hHHHHHHHHhcCCCchhhhhhhhhcccCCCCccccccc
Q 004467 207 LQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANA 275 (752)
Q Consensus 207 l~~l~~~l~~~~~~~~~~~l~~~~~-~~~~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~ 275 (752)
++. ..+..++... .+.+++. ..++|+ ++.|||++++++|+|..... .
T Consensus 228 ~e~--~~l~~~~~~~---~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~-------~---------- 285 (529)
T 2h5e_A 228 RDE--LELVKGASNE---FDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQT-------D---------- 285 (529)
T ss_dssp HHH--HHHHHHHSCC---CCHHHHHTTSEEEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEB-------S----------
T ss_pred hcc--cchhhhhhhh---hhHHHHHhCceeEEEeeecccCCCHHHHHHHHHHhCCCCCcccc-------c----------
Confidence 433 1111111100 0111222 345564 68999999999999964321 0
Q ss_pred ccccC-CCCCeEEEEEEEee---cCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceee
Q 004467 276 IRNCD-PNGPLMLYVSKMIP---ASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQET 351 (752)
Q Consensus 276 i~~~~-~~~pl~~~V~Kv~~---~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~ 351 (752)
...++ .++||+++|||+.. +++.|+ ++|+||+||+|++||.|++.+. ++ .++|.+++.++|.++++
T Consensus 286 ~~~~~~~~~~~~~~vfKi~~~~d~~~~G~-i~~~RV~sG~l~~g~~v~~~~~----~~-----~~~v~~i~~~~g~~~~~ 355 (529)
T 2h5e_A 286 TRTVEASEDKFTGFVFKIQANMDPKHRDR-VAFMRVVSGKYEKGMKLRQVRT----AK-----DVVISDALTFMAGDRSH 355 (529)
T ss_dssp SCEECTTCCSCEEEEEEECSSCCSSSSCC-CEEEEEEESCEETTCEEEETTT----TE-----EEECSCEECCCC-----
T ss_pred ccccCCCCCCeEEEEEEEeeccCcCCCce-EEEEEEecCeEcCCCEEEEeeC----CC-----EEEeceeeEEeCCCceE
Confidence 01112 26899999999975 345787 9999999999999999997642 22 37999999999999999
Q ss_pred eccccCCCEEEEeccccccccce-eeccCCCCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEE
Q 004467 352 VEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCT 430 (752)
Q Consensus 352 V~ea~AGdIvai~Gl~~~~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~ 430 (752)
+++|.|||||++.|++++ .+| |||+.+ ...++++.++ +|+++++|+|+++.|.++|.+||++|++||| +++.
T Consensus 356 v~~a~aGdiv~i~~l~~~--~~Gdtl~~~~---~~~~~~~~~~-~P~~~~~v~~~~~~d~~kl~~~L~~L~~ed~-~~~~ 428 (529)
T 2h5e_A 356 VEEAYPGDILGLHNHGTI--QIGDTFTQGE---MMKFTGIPNF-APELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVF 428 (529)
T ss_dssp CCEECTTCEEEECCSSCC--CTTCEEESSC---CCCBCCCEEE-CCSEEEEEEESCC---CTHHHHHHHHHHTTS-CEEE
T ss_pred cceECCCCEEEEeccCCC--ccCCEeecCC---ccccCCCCCC-CccEEEEEEECChHHHHHHHHHHHHHHhhCC-EEEE
Confidence 999999999999999987 566 999866 3567777776 8999999999999999999999999999998 7787
Q ss_pred Ec-CCCcEEEEecchhhHHHHHHHHHhhcCCCcEEEEeCcEEEEEeeccc
Q 004467 431 IE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLE 479 (752)
Q Consensus 431 ~~-etge~il~g~GelhLei~~~rL~~~f~~~vev~~s~p~V~yrETi~~ 479 (752)
.+ +|||++|+|||||||||+++||+++| |+++.+++|+|+|||||..
T Consensus 429 ~~~~t~~~il~~~Gelhlev~~~rl~~ey--~v~v~~~~~~v~y~eti~~ 476 (529)
T 2h5e_A 429 RPISNNDLIVGAVGVLQFDVVVARLKSEY--NVEAVYESVNVATARWVEC 476 (529)
T ss_dssp EETTSCCEEEEESSTHHHHHHHHHHHHHS--SCCEEEECCCCSEEEEEEC
T ss_pred EeCCCCcEEEEEECHHHHHHHHHHHHHHh--CcEEEEecCceeEEEEEcC
Confidence 76 89999999999999999999999999 9999999999999999964
No 12
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=2.7e-58 Score=524.08 Aligned_cols=403 Identities=20% Similarity=0.296 Sum_probs=307.8
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC--------ccccCCchhHhHhcceeccceEEEEEeeccchhc
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD--------VRMTDTRADEAERGITIKSTGISLYYEMTDDALK 87 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~--------~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~ 87 (752)
.+++|||+|+||+|+|||||+++|++.+|.+.+ .|. ..++|+++.|++||+|+.++...+.|.
T Consensus 10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~--~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~------- 80 (528)
T 3tr5_A 10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQL--AGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK------- 80 (528)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHH--HHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET-------
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHHhhcCCccc--ceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC-------
Confidence 467999999999999999999999999998865 332 358999999999999999999999996
Q ss_pred cccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh--CCCC
Q 004467 88 SYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW--GENF 158 (752)
Q Consensus 88 ~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld--g~~~ 158 (752)
++.+||+|||||.||..++.++++.+|+||+|||++.|++ .++..+++|+++|+||+| ++++
T Consensus 81 ---------~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~ 151 (528)
T 3tr5_A 81 ---------DYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPS 151 (528)
T ss_dssp ---------TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCH
T ss_pred ---------CEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccH
Confidence 7999999999999999999999999999999999999876 566778999999999999 4444
Q ss_pred cchhhc---ccccc------CCCCccccCcceeeEechHH---------------------HHHHHhhccchhhHHHHHH
Q 004467 159 FDPATK---KWTTK------NTGSATCKRGFVQFCYEPIK---------------------QIINTCMNDQKDKLWPMLQ 208 (752)
Q Consensus 159 ~~~~~~---~~~~~------~~g~~~~~~~fv~~~l~~i~---------------------~l~~~~~~~~~~~l~~~l~ 208 (752)
.+.+.. .+... ++|.+..+.++++++....+ ..++..+. +.++++++
T Consensus 152 ~~~l~ei~~~l~~~~~~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~e 228 (528)
T 3tr5_A 152 IELLDEIESILRIHCAPVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLG---DLASELRN 228 (528)
T ss_dssp HHHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHT---HHHHHHHH
T ss_pred HHHHHHHHHhhCCCceeeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHH---HHHHHHhh
Confidence 333321 12111 12332233333332211000 01111111 11333333
Q ss_pred HcCCCCChhhH-hhchHHHHHHHH-hccccc----------hHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccc
Q 004467 209 KLGVTMKSEEK-DLMGKALMKRVM-QTWLPA----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAI 276 (752)
Q Consensus 209 ~l~~~l~~~~~-~~~~~~l~~~~~-~~~~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i 276 (752)
.+ .+..+.. .++ .+++. ..++|+ ++.||+++++++|+|.+.... ...
T Consensus 229 ~~--~l~~~~~~~~~----~~~~~~~~~~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~---------------~~~ 287 (528)
T 3tr5_A 229 EI--ELVKGASHPFE----REGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETN---------------SRL 287 (528)
T ss_dssp HH--HHHHHHSCCCC----HHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBS---------------SSC
T ss_pred hc--chhhhhhhHHH----HHHHhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCccccc---------------cee
Confidence 31 1111100 001 12222 355665 689999999999999643210 000
Q ss_pred cccCCCCCeEEEEEEEee--cC-CCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeec
Q 004467 277 RNCDPNGPLMLYVSKMIP--AS-DKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVE 353 (752)
Q Consensus 277 ~~~~~~~pl~~~V~Kv~~--~~-~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ 353 (752)
.. ..++||+++|||+.. ++ +.|+ ++|+|||||+|++||.|++.+ .++ .+++.+++.++|+++++|+
T Consensus 288 ~~-~~~~~~~~~VFKi~~~~dp~~~g~-l~~~RV~sG~l~~g~~v~~~~----~~~-----~~rv~~~~~~~~~~~~~v~ 356 (528)
T 3tr5_A 288 VK-PEEEKFSGFVFKIQANMDPGHRDR-IAFLRIASGQYQKGMKAYHVR----LKK-----EIQINNALTFMAGKRENAE 356 (528)
T ss_dssp BC-TTSSSCEEEEEEEEECCC-CCCCE-EEEEEEEESCEETTEEEEETT----TTE-----EEEESSCBCCBTTCSSCCS
T ss_pred eC-CCcccceeEEEEEecccCccCCce-EEEEEEecCeEcCCCEEEecC----CCc-----eEEEeeeEEEeCCCeeECC
Confidence 11 236899999999985 66 7787 999999999999999999653 232 3799999999999999999
Q ss_pred cccCCCEEEEeccccccccce-eeccCCCCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEEEEc
Q 004467 354 DVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE 432 (752)
Q Consensus 354 ea~AGdIvai~Gl~~~~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v~~~ 432 (752)
+|.|||||++.|++++ ++| |||+.. ...++++.++ .|+++++|+|+++.|.++|.+||++|.+|||+ ++..+
T Consensus 357 ~a~aGdI~~~~~l~~~--~~GDtl~~~~---~~~~~~~~~~-~P~~~~~i~~~~~~d~~kl~~aL~~L~~ED~~-~~~~~ 429 (528)
T 3tr5_A 357 EAWPGDIIGLHNHGTI--QIGDTFTQGE---RFKFTGIPNF-ASELFRLVRLKDPLKQKALLKGLTQLSEEGAT-QLFRP 429 (528)
T ss_dssp EECTTCEEEEEESSSC--CTTCEEESSC---CCCBCCCEEE-CCSEEEEEEESCGGGHHHHHHHHHHHHHTTSC-EEEEE
T ss_pred EECCCCEEEEcCCCCC--ccCCEEcCCC---CcccCCCCCC-CCCEEEEEEECChhHHHHHHHHHHHHHhcCCe-EEEEc
Confidence 9999999999999987 667 999843 4566777776 89999999999999999999999999999997 66655
Q ss_pred -CCCcEEEEecchhhHHHHHHHHHhhcCCCcEEEEeCcEEEEEeecccc
Q 004467 433 -ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEK 480 (752)
Q Consensus 433 -etge~il~g~GelhLei~~~rL~~~f~~~vev~~s~p~V~yrETi~~~ 480 (752)
+|+|++|+|||||||||+++||+++| |+++.+++|+|+|+|+|...
T Consensus 430 ~~~~~~il~~~G~lhlev~~~rL~~ey--~v~v~~~~~~v~~~~~i~~~ 476 (528)
T 3tr5_A 430 LDSNELILGAVGLLQFDVVAYRLENEY--NVKCVYESVNVVTARWVICD 476 (528)
T ss_dssp TTCCCEEEEESSTHHHHHHHHHHHHHH--CCCEEEECCSCCEEEEEECS
T ss_pred CCCCCEEEEEEcHHHHHHHHHHHHHHh--CcEEEEecCceEEEEEecCC
Confidence 89999999999999999999999999 99999999999999998753
No 13
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=100.00 E-value=1.1e-38 Score=334.01 Aligned_cols=195 Identities=23% Similarity=0.385 Sum_probs=158.7
Q ss_pred EEeccccccccce-eeccCCCCCccccccccccCCceEEEEEEeCCC----CC-----HhHHHHHHHHHHhcCCeEEEEE
Q 004467 362 AMVGLDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVA----SD-----LPKLVEGLKRLAKSDPMVVCTI 431 (752)
Q Consensus 362 ai~Gl~~~~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~----~d-----~~kL~~~L~~L~~eDPsl~v~~ 431 (752)
+++||+++ .+| |||+.. .+.+++++.++ +|+++++|+|.+. .| ..+|.++|.+|.++||+|+++.
T Consensus 2 av~Gl~~~--~iGDTl~~~~--~p~~L~~~~~~-ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~ 76 (332)
T 3e3x_A 2 NATGLGEL--KISDTICAQN--AVEALPALSVD-EPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQ 76 (332)
T ss_dssp -------------------------------CC-CCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEE
T ss_pred CccCCCCC--ccCCEEcCCC--CcccCCCCCCC-CCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEE
Confidence 57788887 567 999987 66788888886 9999999999987 55 6799999999999999999998
Q ss_pred c-CCCcEEEEecchhhHHHHHHHHHhhcCCCcEEEEeCcEEEEEeecccccceeEEeecCCCceEEEEEEEeCChhhHHH
Q 004467 432 E-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEA 510 (752)
Q Consensus 432 ~-etge~il~g~GelhLei~~~rL~~~f~~~vev~~s~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~ePl~~~~~~~ 510 (752)
+ +++|++|+|||||||||+++||+++ |+++.+++|+|+|||| .
T Consensus 77 ~~~t~~~~v~G~GELHLeIl~ErLrrE---g~ev~v~~P~V~YrEt--~------------------------------- 120 (332)
T 3e3x_A 77 TDDPDKFRVSGRGELHLSILIENMRRE---GFELAVSRPEVIIXEE--D------------------------------- 120 (332)
T ss_dssp CSSTTEEEEEESSHHHHHHHHHHHHHH---TBCEEECCCEECCEEE--T-------------------------------
T ss_pred cCCCCeEEEEeeCHHHHHHHHHHHHhc---CceEEEeCCEEEEEEE--C-------------------------------
Confidence 7 7999999999999999999999999 8999999999999996 0
Q ss_pred HHcCCCCCCCChHHHHHHhhhhcCCchhccCcEEEeccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCcCCCC
Q 004467 511 IDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEEN 590 (752)
Q Consensus 511 i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~P~~~~~n~~~~~~~~~~~~~~~~~~i~~G~~~a~~~Gpl~~~p 590 (752)
|
T Consensus 121 ---------------------------------------------------G---------------------------- 121 (332)
T 3e3x_A 121 ---------------------------------------------------G---------------------------- 121 (332)
T ss_dssp ---------------------------------------------------T----------------------------
T ss_pred ---------------------------------------------------C----------------------------
Confidence 1
Q ss_pred eeeeEEEEEeeeecccccccCCCchHHHHHHHHHHHHHhCCCeEEeeEEEEEEEecCcccccHHHHhhhhcccccccccc
Q 004467 591 MRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQR 670 (752)
Q Consensus 591 v~~v~v~l~d~~~~~d~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~ 670 (752)
+||||||.++|.||++++|.|+++|++|||++.+++..
T Consensus 122 ------------------------------------------~llEPi~~v~I~vPee~~G~Vm~~L~~RRG~i~~m~~~ 159 (332)
T 3e3x_A 122 ------------------------------------------QLMEPFETVTIDVMEEHQGGIMENIGLRXGELXDMAPD 159 (332)
T ss_dssp ------------------------------------------EEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEC
T ss_pred ------------------------------------------EEECcEEEEEEEECHHHHHHHHHHHHhhcccccCceEC
Confidence 78999999999999999999999999999999999886
Q ss_pred CCCCcEEEEEEecchhhcCchHHhhhhCCCceeeeeEecceeec-CCCCC
Q 004467 671 PGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMM-SSDPL 719 (752)
Q Consensus 671 ~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v-~~d~~ 719 (752)
++ +++.|+|++|++|+|||.++|||+|+|+|+|+++|+||+++ |+++-
T Consensus 160 ~~-g~~~I~~~vPl~el~Gy~~eLrS~T~G~g~~~~~F~~Y~p~~pg~i~ 208 (332)
T 3e3x_A 160 GK-GRVRMDFIMPSRGLIGFQTEFMTLTSGSGLLYHTFDHYGPHXGGNIG 208 (332)
T ss_dssp SS-SEEEEEEEEEHHHHTTHHHHHHHHTTTCCEEEEEEEEEEECCCCSCS
T ss_pred CC-CeEEEEEEEChHHhhhHHHHhhhhCCCcEEEEEEecCceEcCCCccc
Confidence 43 58899999999999999999999999999999999999999 89864
No 14
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.97 E-value=3.6e-31 Score=296.05 Aligned_cols=277 Identities=22% Similarity=0.328 Sum_probs=193.1
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCcccc----------CCC-----ccccCCchhHhHhcceeccceEEEEEe
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRADEAERGITIKSTGISLYYE 80 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~----------~g~-----~~~~D~~~~E~eRgiTi~s~~~~~~~~ 80 (752)
.+..+||+++||+|+|||||+++|++.+|.+.... .|+ .+++|..++||+||+|++.+...+.+.
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 35678999999999999999999999999886642 221 358999999999999999998887775
Q ss_pred eccchhccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhH---------H-----HHHHHhCCC-
Q 004467 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV---------C-----MYASKFGVD- 145 (752)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv---------~-----~~~~~~~~p- 145 (752)
++.++|+|||||.+|..++.++++.+|+||+||||.+|+ + .++..+++|
T Consensus 94 ----------------~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~ 157 (439)
T 3j2k_7 94 ----------------KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKH 157 (439)
T ss_pred ----------------CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCe
Confidence 789999999999999999999999999999999999985 2 566778999
Q ss_pred HHHHHHHhhC--CCCcchhhccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhch
Q 004467 146 ESKMMERLWG--ENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMG 223 (752)
Q Consensus 146 ~~~~inkldg--~~~~~~~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ 223 (752)
.++++||+|- .+| + +...+...+.+..+++.+|..... ..
T Consensus 158 iIvviNK~Dl~~~~~--------~-------------------------~~~~~~i~~~~~~~l~~~g~~~~~-~~---- 199 (439)
T 3j2k_7 158 LIVLINKMDDPTVNW--------S-------------------------NERYEECKEKLVPFLKKVGFNPKK-DI---- 199 (439)
T ss_pred EEEEeecCCCcccch--------H-------------------------HHHHHHHHHHHHHHHHHhcccccC-Ce----
Confidence 7888999992 121 0 011111223455566665543110 00
Q ss_pred HHHHHHHHhccccchHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccc--cCCCCCeEEEEEEEeecCCCCce
Q 004467 224 KALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRN--CDPNGPLMLYVSKMIPASDKGRF 301 (752)
Q Consensus 224 ~~l~~~~~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~--~~~~~pl~~~V~Kv~~~~~~g~~ 301 (752)
.++|++..--+.+.+... ...||.|+...++++.+.. .+.+.|+.+.|..++. +.|+
T Consensus 200 ---------~~i~iSA~~G~ni~~l~~---------~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~v~~~~~--~~G~- 258 (439)
T 3j2k_7 200 ---------HFMPCSGLTGANLKEQSD---------FCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDKYK--DMGT- 258 (439)
T ss_pred ---------eEEEeeccCCcccccccc---------cccccCchHHHHHHHhCCCCccCCCCCeEEEEEEEEc--CCCe-
Confidence 123332111111111000 0013333222111111111 1357899999999875 5676
Q ss_pred eEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEE--Eeccccccccce-eecc
Q 004467 302 FAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVA--MVGLDQFITKNA-TLTN 378 (752)
Q Consensus 302 v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIva--i~Gl~~~~~~tg-TL~~ 378 (752)
++.|||.+|+|++||.|.+++.+ . ..+|..|+. ...++++|.|||+|+ +.|++...++.| +|++
T Consensus 259 v~~G~v~~G~l~~Gd~v~~~p~~----~-----~~~V~~i~~----~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~ 325 (439)
T 3j2k_7 259 VVLGKLESGSIFKGQQLVMMPNK----H-----NVEVLGILS----DDTETDFVAPGENLKIRLKGIEEEEILPGFILCD 325 (439)
T ss_pred EEEEEEEeeEEecCCEEEEccCC----c-----eEEEEEEEE----CCeEcCEecCCCcceEEEeccchhhcCCcEEecC
Confidence 89999999999999999998643 1 257777764 457899999999999 568887666778 8887
Q ss_pred CC
Q 004467 379 EK 380 (752)
Q Consensus 379 ~~ 380 (752)
++
T Consensus 326 ~~ 327 (439)
T 3j2k_7 326 PS 327 (439)
T ss_pred CC
Confidence 65
No 15
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.96 E-value=4.7e-29 Score=276.75 Aligned_cols=278 Identities=23% Similarity=0.339 Sum_probs=193.3
Q ss_pred ccCCeeEEEEEeCCCCChHHHHHHHHHH---cCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccC
Q 004467 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAA---AGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG 91 (752)
Q Consensus 15 ~~~~iRni~iighvd~GKTTL~~~ll~~---~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~ 91 (752)
..+..+||+++||+|||||||+++|+.. .|.... .-....+|.+++|++||+|++.....+.+.
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~--~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~----------- 73 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVE--VKDYGDIDKAPEERARGITINTAHVEYETA----------- 73 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSC--CCCHHHHSCSHHHHHHTCCCSCEEEEEECS-----------
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCcccc--ccchhhccCCHHHHHcCCCEEeeeeEeccC-----------
Confidence 3456789999999999999999999874 221000 111236899999999999999977666553
Q ss_pred CCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCC-HHHHHHHhhCCCCcchhh
Q 004467 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVD-ESKMMERLWGENFFDPAT 163 (752)
Q Consensus 92 ~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p-~~~~inkldg~~~~~~~~ 163 (752)
++.++|+|||||.+|..++.++++.+|++|+|||+.+|+. .++..+++| .++++||+|..+-
T Consensus 74 -----~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~----- 143 (405)
T 2c78_A 74 -----KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDD----- 143 (405)
T ss_dssp -----SCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCC-----
T ss_pred -----CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCc-----
Confidence 6899999999999999999999999999999999999864 556678999 5788999992110
Q ss_pred ccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhH-hh---chHHHHHHH------Hhc
Q 004467 164 KKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEK-DL---MGKALMKRV------MQT 233 (752)
Q Consensus 164 ~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~-~~---~~~~l~~~~------~~~ 233 (752)
. +.++. ..+.+.++++.++.......+ .. .+..+.+.. ...
T Consensus 144 ----------------------~---~~~~~----~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~ 194 (405)
T 2c78_A 144 ----------------------P---ELLDL----VEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENE 194 (405)
T ss_dssp ----------------------H---HHHHH----HHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCH
T ss_pred ----------------------H---HHHHH----HHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCc
Confidence 0 00111 112344555554431000000 00 111111110 012
Q ss_pred cccchHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeec
Q 004467 234 WLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVS 313 (752)
Q Consensus 234 ~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~ 313 (752)
|.+.+..|++.+.+++|.|.. +.++|+.++|++++..++.|. +++|||++|+|+
T Consensus 195 ~~~~i~~Ll~~l~~~lp~p~~-------------------------~~~~p~~~~v~~v~~~~~~G~-v~~g~v~~G~l~ 248 (405)
T 2c78_A 195 WVDKIWELLDAIDEYIPTPVR-------------------------DVDKPFLMPVEDVFTITGRGT-VATGRIERGKVK 248 (405)
T ss_dssp HHHHHHHHHHHHHHHSCCCCC-------------------------CCSSCCEEECCEEEEETTTEE-EEEEECCBSEEE
T ss_pred ccccHHHHHHHHHhhcCCCCC-------------------------CCCCCcEEEEEEEEEcCCCce-EEEEEEeccccc
Confidence 222367899999999987731 356899999999999888887 899999999999
Q ss_pred CCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEe--ccccccccce-eeccCC
Q 004467 314 TGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQFITKNA-TLTNEK 380 (752)
Q Consensus 314 ~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~--Gl~~~~~~tg-TL~~~~ 380 (752)
.||.|.+++.+. + ....+|..|... ..++++|.|||++++. |++...+..| +|+++.
T Consensus 249 ~gd~v~~~~~~~--~----~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~~~~ 308 (405)
T 2c78_A 249 VGDEVEIVGLAP--E----TRKTVVTGVEMH----RKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPG 308 (405)
T ss_dssp TTCEEEEESSSS--S----CEEEEEEEEEET----TEEESEEETTCEEEEEESSCCTTTCCTTCEEESTT
T ss_pred CCCEEEEeCCCC--C----eeeEEEEEEEEC----CcccCEEcCCCEEEEEECCCcHhhcCceEEEEcCC
Confidence 999999886431 0 123578887642 3679999999999875 6654445777 888765
No 16
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.96 E-value=5.7e-30 Score=286.45 Aligned_cols=274 Identities=24% Similarity=0.387 Sum_probs=176.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCcccc----------CCC-----ccccCCchhHhHhcceeccceEEEEEee
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRADEAERGITIKSTGISLYYEM 81 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~----------~g~-----~~~~D~~~~E~eRgiTi~s~~~~~~~~~ 81 (752)
+..+||+++||+|||||||+++|++.+|.+.+.. .|+ ++++|++++||+||+|++.+...+.|.
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~- 82 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK- 82 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS-
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC-
Confidence 5689999999999999999999999987775421 222 246899999999999999998777765
Q ss_pred ccchhccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhH-------H-------HHHHHhCCC-H
Q 004467 82 TDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-------C-------MYASKFGVD-E 146 (752)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv-------~-------~~~~~~~~p-~ 146 (752)
++.++|+|||||.+|..++.++++.+|+||+||||.+|. . .++..+++| .
T Consensus 83 ---------------~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~i 147 (435)
T 1jny_A 83 ---------------KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQL 147 (435)
T ss_dssp ---------------SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTC
T ss_pred ---------------CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeE
Confidence 789999999999999999999999999999999999982 2 455667886 5
Q ss_pred HHHHHHhhCCC--CcchhhccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhH-hh--
Q 004467 147 SKMMERLWGEN--FFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEK-DL-- 221 (752)
Q Consensus 147 ~~~inkldg~~--~~~~~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~-~~-- 221 (752)
++++||+|-.+ |.. +.++. ..+.+..+++.++.......+ ..
T Consensus 148 ivviNK~Dl~~~~~~~-----------------------------~~~~~----~~~~i~~~~~~~~~~~~~~~~i~iSA 194 (435)
T 1jny_A 148 IVAVNKMDLTEPPYDE-----------------------------KRYKE----IVDQVSKFMRSYGFNTNKVRFVPVVA 194 (435)
T ss_dssp EEEEECGGGSSSTTCH-----------------------------HHHHH----HHHHHHHHHHHTTCCCTTCEEEECBT
T ss_pred EEEEEcccCCCccccH-----------------------------HHHHH----HHHHHHHHHHHcCCCcCCceEEEeec
Confidence 67889999221 200 00111 123345555554432100000 00
Q ss_pred -chHHHHHHH-HhccccchHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCC
Q 004467 222 -MGKALMKRV-MQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKG 299 (752)
Q Consensus 222 -~~~~l~~~~-~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g 299 (752)
.+..+.+.. .-.|+-. ..|++++. .+|+|.. +.+.|+.+.|..++..++.|
T Consensus 195 ~~g~~v~e~~~~~~~~~g-~~Ll~~l~-~~~~p~~-------------------------~~~~~~~~~v~~v~~~~~~G 247 (435)
T 1jny_A 195 PSGDNITHKSENMKWYNG-PTLEEYLD-QLELPPK-------------------------PVDKPLRIPIQDVYSISGVG 247 (435)
T ss_dssp TTTBTTTBCCSSCTTCCS-CCHHHHHT-TCCCCCC-------------------------GGGSCCBEEEEEEEEETTTE
T ss_pred ccCccccccccccccccc-hhHHHHHh-ccCCCCC-------------------------CCCCCeEEEEEEEEEeCCCc
Confidence 000000000 0011100 24555543 3343421 23467888888888888888
Q ss_pred ceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEe--ccccccccce-ee
Q 004467 300 RFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQFITKNA-TL 376 (752)
Q Consensus 300 ~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~--Gl~~~~~~tg-TL 376 (752)
+ +++|||++|+|++||.|++++.+ . ..+|.+|+. ...++++|.|||+|++. |++...+++| +|
T Consensus 248 ~-v~~g~v~~G~l~~gd~v~~~p~~----~-----~~~V~~i~~----~~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l 313 (435)
T 1jny_A 248 T-VPVGRVESGVLKVGDKIVFMPAG----K-----VGEVRSIET----HHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVV 313 (435)
T ss_dssp E-EEEEECCBSCEETTCEEEEETTT----E-----EEEEEEEEE----TTEEESEECTTCEEEEEEESSCGGGCCTTCEE
T ss_pred E-EEEEEEecCeEEcCCEEEECCce----e-----EEEEEEEEE----CCcEEeEEcCCCEEEEEEecCCHHHcCCccEe
Confidence 7 99999999999999999987532 1 368888864 24789999999999984 5543334677 88
Q ss_pred ccCC
Q 004467 377 TNEK 380 (752)
Q Consensus 377 ~~~~ 380 (752)
+++.
T Consensus 314 ~~~~ 317 (435)
T 1jny_A 314 GHPN 317 (435)
T ss_dssp ECTT
T ss_pred cCCC
Confidence 8765
No 17
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.96 E-value=1.7e-29 Score=279.40 Aligned_cols=276 Identities=18% Similarity=0.277 Sum_probs=190.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
...||+++||+|||||||+++|+...........-..+.+|.+++|++||+|+..+...+.+. +
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----------------~ 65 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA----------------A 65 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECS----------------S
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccC----------------C
Confidence 356899999999999999999987532100000001235899999999999999877655553 6
Q ss_pred eEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCH-HHHHHHhhCCCCcchhhcccccc
Q 004467 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDE-SKMMERLWGENFFDPATKKWTTK 169 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~-~~~inkldg~~~~~~~~~~~~~~ 169 (752)
+.++|+|||||.+|..++.++++.+|+||+|||+.+|+. .++..+++|. ++++||+|..+-
T Consensus 66 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~----------- 134 (397)
T 1d2e_A 66 RHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQD----------- 134 (397)
T ss_dssp CEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSC-----------
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCC-----------
Confidence 899999999999999999999999999999999999865 5566789995 688999992110
Q ss_pred CCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhH-hhchHHHHHHHHhccccc-hHHHHHHHHh
Q 004467 170 NTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEK-DLMGKALMKRVMQTWLPA-SSALLEMMIF 247 (752)
Q Consensus 170 ~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~-~~~~~~l~~~~~~~~~P~-~~~LLd~i~~ 247 (752)
. +.++. ..+.+.++++.++.......+ ..+...-.......|... +..|++.+.+
T Consensus 135 ----------------~---~~~~~----~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~ 191 (397)
T 1d2e_A 135 ----------------S---EMVEL----VELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT 191 (397)
T ss_dssp ----------------H---HHHHH----HHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred ----------------H---HHHHH----HHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHH
Confidence 0 00111 123345566664432100000 000000000000012222 5689999999
Q ss_pred cCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCC
Q 004467 248 HLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVP 327 (752)
Q Consensus 248 ~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~ 327 (752)
++|.|.. +.++|+.++|++++..++.|. +++|||++|+|++||.|.++|.+
T Consensus 192 ~~p~p~~-------------------------~~~~p~~~~v~~v~~~~~~G~-v~~g~v~~G~l~~gd~v~~~~~~--- 242 (397)
T 1d2e_A 192 YIPVPTR-------------------------DLEKPFLLPVESVYSIPGRGT-VVTGTLERGILKKGDECEFLGHS--- 242 (397)
T ss_dssp HSCCCCC-------------------------CTTSCCEEECCEEEEETTTEE-EEEEECCBSEEETTCEEEEEETT---
T ss_pred hCCCCCC-------------------------CCCCcEEEEEEEEEEeCCceE-EEEEEEeeceEeCCCEEEEeCCC---
Confidence 9998731 356899999999999888887 89999999999999999987642
Q ss_pred CCcccceeeeeeeEEEEecCceeeeccccCCCEEEEe--ccccccccce-eeccCC
Q 004467 328 GEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQFITKNA-TLTNEK 380 (752)
Q Consensus 328 ~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~--Gl~~~~~~tg-TL~~~~ 380 (752)
. ....+|..|... ..++++|.|||++++. |++...+..| +|++++
T Consensus 243 -~---~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~~ 290 (397)
T 1d2e_A 243 -K---NIRTVVTGIEMF----HKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPG 290 (397)
T ss_dssp -E---EEEEEEEEEEET----TEEESEEETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred -C---CeEEEEEEEEEC----CcccCEecCCCceEEEecccchhccCceeEEeCCC
Confidence 0 123578877542 3679999999999875 7654445777 888765
No 18
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.96 E-value=5.6e-30 Score=288.64 Aligned_cols=278 Identities=22% Similarity=0.363 Sum_probs=157.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccc----------cCCC-----ccccCCchhHhHhcceeccceEEEEEee
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRADEAERGITIKSTGISLYYEM 81 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~----------~~g~-----~~~~D~~~~E~eRgiTi~s~~~~~~~~~ 81 (752)
+..+||+++||+|||||||+++|++.+|.+... ..|+ .+++|.+++||+||+||..+...+.+.
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~- 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE- 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence 567899999999999999999999999887532 1232 357999999999999999998777764
Q ss_pred ccchhccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhH---------H-----HHHHHhCCC-H
Q 004467 82 TDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV---------C-----MYASKFGVD-E 146 (752)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv---------~-----~~~~~~~~p-~ 146 (752)
++.++|+|||||.+|..++.++++.+|+||+||||.+|+ + .++..+++| .
T Consensus 120 ---------------~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~i 184 (467)
T 1r5b_A 120 ---------------HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHL 184 (467)
T ss_dssp ---------------SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSE
T ss_pred ---------------CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEE
Confidence 689999999999999999999999999999999999996 2 556678998 6
Q ss_pred HHHHHHhhC--CCCcchhhccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHc-CCCCChhhHhhch
Q 004467 147 SKMMERLWG--ENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKL-GVTMKSEEKDLMG 223 (752)
Q Consensus 147 ~~~inkldg--~~~~~~~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l-~~~l~~~~~~~~~ 223 (752)
++++||+|- .+|. . +.++.+ .+.+..+++.+ |+.. ...
T Consensus 185 ivviNK~Dl~~~~~~--------~---------------------~~~~~i----~~e~~~~l~~~~g~~~-~~~----- 225 (467)
T 1r5b_A 185 VVVINKMDEPSVQWS--------E---------------------ERYKEC----VDKLSMFLRRVAGYNS-KTD----- 225 (467)
T ss_dssp EEEEECTTSTTCSSC--------H---------------------HHHHHH----HHHHHHHHHHHHCCCH-HHH-----
T ss_pred EEEEECccCCCcccc--------H---------------------HHHHHH----HHHHHHHHHHhcCCCc-cCC-----
Confidence 788999992 2220 0 001111 12344444443 3220 000
Q ss_pred HHHHHHHHhccccchHHHHHHHHhcCCCchhhhhhhhhcccCCCCccccccccccc--CCCCCeEEEEEEEeecCCCCce
Q 004467 224 KALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNC--DPNGPLMLYVSKMIPASDKGRF 301 (752)
Q Consensus 224 ~~l~~~~~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~--~~~~pl~~~V~Kv~~~~~~g~~ 301 (752)
-.++|++..--+.+.+.+.. ....||.|+...++++.+..+ +.++||.+.|..++. +.|+
T Consensus 226 --------~~~i~vSA~~g~~i~~l~~~-------~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~v~~~~~--~~G~- 287 (467)
T 1r5b_A 226 --------VKYMPVSAYTGQNVKDRVDS-------SVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPIASKYK--DLGT- 287 (467)
T ss_dssp --------EEEEECBTTTTBTTSSCCCT-------TTCSSCCSCCHHHHHHHCCCCHHHHTSCCEEECCEEEE--SSSE-
T ss_pred --------ceEEeccccccccccccccc-------ccCccccchhHHHHHHhCCCCcCCCCCCcEEEEEEEEe--CCCe-
Confidence 01233322111111111100 011244444332222222111 346899999999876 3676
Q ss_pred eEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEE--eccccccccce-eecc
Q 004467 302 FAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTN 378 (752)
Q Consensus 302 v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai--~Gl~~~~~~tg-TL~~ 378 (752)
+++|||.+|+|++||.|.++|.+ . ..+|..|+. ....++++|.|||+|++ .| +...++.| +|++
T Consensus 288 v~~G~v~~G~l~~gd~v~~~p~~----~-----~~~V~~i~~---~~~~~~~~a~aG~~v~i~l~g-~~~~i~rG~vl~~ 354 (467)
T 1r5b_A 288 ILEGKIEAGSIKKNSNVLVMPIN----Q-----TLEVTAIYD---EADEEISSSICGDQVRLRVRG-DDSDVQTGYVLTS 354 (467)
T ss_dssp EEEEECCBSEEETTEEEEEETTT----E-----EEEEEEEEC---TTCCEESEEETTCEEEEEEES-CCTTCCTTCEEEC
T ss_pred EEEEEEeeeEEeeCCEEEEccCC----e-----eEEEEEEec---cCCcEeeEEcCCCEEEEEEec-cHhhCCceEEEeC
Confidence 99999999999999999998632 1 247777653 12578999999999998 56 43334677 8887
Q ss_pred CC
Q 004467 379 EK 380 (752)
Q Consensus 379 ~~ 380 (752)
++
T Consensus 355 ~~ 356 (467)
T 1r5b_A 355 TK 356 (467)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 19
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.95 E-value=7.3e-29 Score=281.17 Aligned_cols=289 Identities=21% Similarity=0.339 Sum_probs=178.7
Q ss_pred HHhhcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccc----------cCCC-----ccccCCchhHhHhcceeccce
Q 004467 10 RRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRADEAERGITIKSTG 74 (752)
Q Consensus 10 ~~~~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~----------~~g~-----~~~~D~~~~E~eRgiTi~s~~ 74 (752)
...+...+...||+++||+|+|||||+++|++.++.+... ..|+ .+++|..+.|++||+|++...
T Consensus 24 ~~~l~~~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~ 103 (483)
T 3p26_A 24 SAFVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICT 103 (483)
T ss_dssp HHHHHHSCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCE
T ss_pred HHHHhcCCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeee
Confidence 3334445667899999999999999999999998877653 1222 357999999999999999998
Q ss_pred EEEEEeeccchhccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhH---------H-----HHHH
Q 004467 75 ISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV---------C-----MYAS 140 (752)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv---------~-----~~~~ 140 (752)
..+.+. ++.++|+|||||.+|..++.++++.+|++|+||||.+|. + .++.
T Consensus 104 ~~~~~~----------------~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~ 167 (483)
T 3p26_A 104 SHFSTH----------------RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS 167 (483)
T ss_dssp EEEECS----------------SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHH
T ss_pred EEEecC----------------CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHH
Confidence 887765 789999999999999999999999999999999999983 1 5566
Q ss_pred HhCCC-HHHHHHHhhCCCCcchhhccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhH
Q 004467 141 KFGVD-ESKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEK 219 (752)
Q Consensus 141 ~~~~p-~~~~inkldg~~~~~~~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~ 219 (752)
.++++ .++++||+|-.++.. ..++ ...+.+..+++.++.......+
T Consensus 168 ~~~~~~iIvviNK~Dl~~~~~-----------------------------~~~~----~i~~~~~~~l~~~g~~~~~~~~ 214 (483)
T 3p26_A 168 SLGIHNLIIAMNKMDNVDWSQ-----------------------------QRFE----EIKSKLLPYLVDIGFFEDNINW 214 (483)
T ss_dssp HTTCCCEEEEEECGGGGTTCH-----------------------------HHHH----HHHHHHHHHHHHHTCCGGGEEE
T ss_pred HcCCCcEEEEEECcCcccchH-----------------------------HHHH----HHHHHHHHHHHHcCCCcccceE
Confidence 77866 777889999222100 0011 1123344555554432110000
Q ss_pred ---h-hchHHHHH---HH-Hhccc--cchHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEE
Q 004467 220 ---D-LMGKALMK---RV-MQTWL--PASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYV 289 (752)
Q Consensus 220 ---~-~~~~~l~~---~~-~~~~~--P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V 289 (752)
. ..+..+.+ .. ...|+ |....+|+.+...+|.+. ...+.+.|+.+.|
T Consensus 215 i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~-----------------------p~~~~~~p~r~~v 271 (483)
T 3p26_A 215 VPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKEN-----------------------EGINKDDPFLFSV 271 (483)
T ss_dssp EECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHH-----------------------TTCCSSSCCEEEE
T ss_pred EEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhccccc-----------------------ccccCCCceEEEE
Confidence 0 00000000 00 00122 122334444444333210 0013578999999
Q ss_pred EEEeecC---CCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEe----cCceeeeccccCCCEEE
Q 004467 290 SKMIPAS---DKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWM----GKKQETVEDVPCGNTVA 362 (752)
Q Consensus 290 ~Kv~~~~---~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~----g~~~~~V~ea~AGdIva 362 (752)
..++..+ +.|+ ++.|||.+|+|++||.|.+++.+ . ..+|..|.... |.++.++++|.|||+|+
T Consensus 272 ~~v~~~~~~~g~g~-v~~G~v~~G~l~~gd~v~~~p~~----~-----~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~ 341 (483)
T 3p26_A 272 LEIIPSKKTSNDLA-LVSGKLESGSIQPGESLTIYPSE----Q-----SCIVDKIQVGSQQGQSTNHEETDVAIKGDFVT 341 (483)
T ss_dssp EEEEC---CCSCCE-EEEEEEEESEECTTCEEEEETTT----E-----EEEEEEEEETTTC-----CCEESCEETTCEEE
T ss_pred EEEEccCCcCCCce-EEEEEEecceEccCCEEEEeCCC----C-----eEEEEEEEEcCccccccccccccEECCCCEEE
Confidence 9998865 3565 89999999999999999998643 1 25788887653 44568999999999999
Q ss_pred Ee--ccccccccce-eeccCC
Q 004467 363 MV--GLDQFITKNA-TLTNEK 380 (752)
Q Consensus 363 i~--Gl~~~~~~tg-TL~~~~ 380 (752)
+. +++...++.| +|++++
T Consensus 342 ~~l~~~~~~di~rG~vl~~~~ 362 (483)
T 3p26_A 342 LKLRKAYPEDIQNGDLAASVD 362 (483)
T ss_dssp EEEESCCGGGCCTTCEEECTT
T ss_pred EEEEecccccCCceEEEEcCC
Confidence 83 4433334677 888766
No 20
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.95 E-value=7.5e-30 Score=294.63 Aligned_cols=260 Identities=21% Similarity=0.302 Sum_probs=152.8
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCcccc----------CCC-----ccccCCchhHhHhcceeccceEEEEEe
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRADEAERGITIKSTGISLYYE 80 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~----------~g~-----~~~~D~~~~E~eRgiTi~s~~~~~~~~ 80 (752)
.+.++||+|+||+|||||||+++|++.+|.+.... .|+ .+++|.+++|++||||++.....+.+.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 45689999999999999999999999988776531 222 468999999999999999998887775
Q ss_pred eccchhccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhH-------H-------HHHHHhCCC-
Q 004467 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-------C-------MYASKFGVD- 145 (752)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv-------~-------~~~~~~~~p- 145 (752)
++.++|+|||||.+|..++.++++.+|+|||||||.+|. . .++..+++|
T Consensus 254 ----------------~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~ 317 (592)
T 3mca_A 254 ----------------KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISE 317 (592)
T ss_dssp ---------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCC
T ss_pred ----------------CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCe
Confidence 689999999999999999999999999999999999853 2 567788998
Q ss_pred HHHHHHHhhCCCCcchhhccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHH-HHcCCCCChhhHhhchH
Q 004467 146 ESKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPML-QKLGVTMKSEEKDLMGK 224 (752)
Q Consensus 146 ~~~~inkldg~~~~~~~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l-~~l~~~l~~~~~~~~~~ 224 (752)
.++++||+|..++ +. +.++. ..+.+..++ ..+|... ...
T Consensus 318 iIvviNKiDl~~~--------~~---------------------~~~~~----i~~el~~~l~~~~g~~~--~~~----- 357 (592)
T 3mca_A 318 IVVSVNKLDLMSW--------SE---------------------DRFQE----IKNIVSDFLIKMVGFKT--SNV----- 357 (592)
T ss_dssp EEEEEECGGGGTT--------CH---------------------HHHHH----HHHHHHHHHTTTSCCCG--GGE-----
T ss_pred EEEEEeccccccc--------cH---------------------HHHHH----HHHHHHHHHHHhhCCCc--cce-----
Confidence 6778899992221 00 00111 122344444 4433321 111
Q ss_pred HHHHHHHhccccchH---------------------HHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCC
Q 004467 225 ALMKRVMQTWLPASS---------------------ALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNG 283 (752)
Q Consensus 225 ~l~~~~~~~~~P~~~---------------------~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~ 283 (752)
.++|++. .|++.+.+.+|.+ .+.+.
T Consensus 358 --------~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~pp~--------------------------~~~~~ 403 (592)
T 3mca_A 358 --------HFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVPPE--------------------------KPYRK 403 (592)
T ss_dssp --------EEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCCCS--------------------------CTTTS
T ss_pred --------EEEEEecccCcccccccccccccccchHHHHHHHHhhcccc--------------------------ccccc
Confidence 1233311 3555554444411 13568
Q ss_pred CeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeec-cccCCCEEE
Q 004467 284 PLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVE-DVPCGNTVA 362 (752)
Q Consensus 284 pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~-ea~AGdIva 362 (752)
||.+.|..++.. +.|. +++|||.+|+|++||.|.++|.+ . ..+|..|.. ...+++ +|.|||+|+
T Consensus 404 p~r~~v~~v~~~-~~g~-v~~G~v~~G~l~~Gd~v~i~p~~----~-----~~~V~~i~~----~~~~~~~~a~aG~~v~ 468 (592)
T 3mca_A 404 PLRLSIDDVYRS-PRSV-TVTGRVEAGNVQVNQVLYDVSSQ----E-----DAYVKNVIR----NSDPSSTWAVAGDTVT 468 (592)
T ss_dssp CCEEEEEEEEEE-TTEE-EEEEEEEESEEETTCEEEETTTT----E-----EEEEEEEEC----SSSCSCCEEETTCEEE
T ss_pred cchheeeEEEec-CCeE-EEEEEEeeeeEccCCEEEEccCC----c-----eEEEEEEEE----cCccCcceecCCCEEE
Confidence 999999999988 6665 88999999999999999998643 1 257777774 346799 999999998
Q ss_pred E--eccccccccce-eeccCC
Q 004467 363 M--VGLDQFITKNA-TLTNEK 380 (752)
Q Consensus 363 i--~Gl~~~~~~tg-TL~~~~ 380 (752)
+ .|++...++.| +||++.
T Consensus 469 ~~l~~i~~~~i~rG~vl~~~~ 489 (592)
T 3mca_A 469 LQLADIEVNQLRPGDILSNYE 489 (592)
T ss_dssp EEESSSCGGGCCTTCEEECSS
T ss_pred EEEccccccccceEEEeccCC
Confidence 5 57766556778 888765
No 21
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.95 E-value=4.5e-28 Score=272.40 Aligned_cols=276 Identities=23% Similarity=0.328 Sum_probs=188.2
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccc----------cCCC-----ccccCCchhHhHhcceeccceEEEEEe
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRADEAERGITIKSTGISLYYE 80 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~----------~~g~-----~~~~D~~~~E~eRgiTi~s~~~~~~~~ 80 (752)
.+...||+++||+|||||||+++|++.+|.++.+ ..|+ ++++|..++||+||+|++.+...+.+.
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~ 83 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence 4557899999999999999999999987766532 1232 246899999999999999998877664
Q ss_pred eccchhccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhH---------H-----HHHHHhCCC-
Q 004467 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV---------C-----MYASKFGVD- 145 (752)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv---------~-----~~~~~~~~p- 145 (752)
++.++|+|||||.+|..++.++++.+|++|+||||.+|+ + .++...++|
T Consensus 84 ----------------~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~ 147 (458)
T 1f60_A 84 ----------------KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQ 147 (458)
T ss_dssp ----------------SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCE
T ss_pred ----------------CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCe
Confidence 789999999999999999999999999999999999986 3 455667887
Q ss_pred HHHHHHHhhCCCCcchhhccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhH---h-h
Q 004467 146 ESKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEK---D-L 221 (752)
Q Consensus 146 ~~~~inkldg~~~~~~~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~---~-~ 221 (752)
.++++||+|-.++ +. +.++. ..+.+..+++.++.......+ . .
T Consensus 148 iivviNK~Dl~~~--------~~---------------------~~~~~----i~~~~~~~l~~~g~~~~~~~~i~vSA~ 194 (458)
T 1f60_A 148 LIVAVNKMDSVKW--------DE---------------------SRFQE----IVKETSNFIKKVGYNPKTVPFVPISGW 194 (458)
T ss_dssp EEEEEECGGGGTT--------CH---------------------HHHHH----HHHHHHHHHHHHTCCGGGCCEEECCTT
T ss_pred EEEEEEccccccC--------CH---------------------HHHHH----HHHHHHHHHHHcCCCccCceEEEeecc
Confidence 6778999992211 00 00111 122344555554432100000 0 0
Q ss_pred chHHHHHHHH-hccccc-----------hHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEE
Q 004467 222 MGKALMKRVM-QTWLPA-----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYV 289 (752)
Q Consensus 222 ~~~~l~~~~~-~~~~P~-----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V 289 (752)
.+..+.+... ..|+-. ...|++.+- .+|.|.. +.+.|+.++|
T Consensus 195 ~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~-~~~~p~~-------------------------~~~~p~r~~i 248 (458)
T 1f60_A 195 NGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAID-AIEQPSR-------------------------PTDKPLRLPL 248 (458)
T ss_dssp TCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHH-TSCCCCC-------------------------CTTSCCEEEE
T ss_pred cCcCcccccccCchhhcccccccccccchHHHHHHhh-ccCCCcc-------------------------cCCCCcEEEE
Confidence 0000000000 011100 124555533 3443410 3568999999
Q ss_pred EEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEe--ccc
Q 004467 290 SKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLD 367 (752)
Q Consensus 290 ~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~--Gl~ 367 (752)
..++..++.|+ +++|||.+|+++.||+|.++|.+ . ..+|.+|.. ...++++|.|||++++. |++
T Consensus 249 ~~v~~~~g~G~-v~~G~v~~G~l~~gd~v~~~p~~----~-----~~~V~~i~~----~~~~~~~a~aG~~v~i~l~gi~ 314 (458)
T 1f60_A 249 QDVYKIGGIGT-VPVGRVETGVIKPGMVVTFAPAG----V-----TTEVKSVEM----HHEQLEQGVPGDNVGFNVKNVS 314 (458)
T ss_dssp EEEEEETTTEE-EEEEECCBSCBCTTCEEEEETTT----E-----EEEEEEEEE----TTEECSCBCTTCEEEEEESSCC
T ss_pred EEEEEeCCCcE-EEEEEEeCCeEcCCCEEEECCCC----c-----eEEEeEEEE----CCeEEEEEcCCCEEEEEEcCCc
Confidence 99999888887 99999999999999999988632 1 257777764 24679999999999874 765
Q ss_pred cccccce-eeccCC
Q 004467 368 QFITKNA-TLTNEK 380 (752)
Q Consensus 368 ~~~~~tg-TL~~~~ 380 (752)
...++.| +|+.++
T Consensus 315 ~~~i~rG~vl~~~~ 328 (458)
T 1f60_A 315 VKEIRRGNVCGDAK 328 (458)
T ss_dssp TTTSCTTCEEEETT
T ss_pred ccccCceeEEecCC
Confidence 4444677 777765
No 22
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2e-28 Score=283.52 Aligned_cols=286 Identities=22% Similarity=0.314 Sum_probs=197.5
Q ss_pred ccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccc----------cCCC-----ccccCCchhHhHhcceeccceEEEEE
Q 004467 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRADEAERGITIKSTGISLYY 79 (752)
Q Consensus 15 ~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~----------~~g~-----~~~~D~~~~E~eRgiTi~s~~~~~~~ 79 (752)
..+...||+++||+|+|||||+++|++..+.+... ..|+ .+++|..+.|++||||+......+.+
T Consensus 163 ~~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~ 242 (611)
T 3izq_1 163 SALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST 242 (611)
T ss_dssp CCCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC
T ss_pred ccCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec
Confidence 34556799999999999999999999888877542 1232 46799999999999999999988877
Q ss_pred eeccchhccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH--------------HHHHHhCCC
Q 004467 80 EMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--------------MYASKFGVD 145 (752)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~--------------~~~~~~~~p 145 (752)
. ++.++|+|||||.+|...+.++++.+|++|+||||..|.. .++..+++|
T Consensus 243 ~----------------~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~ 306 (611)
T 3izq_1 243 H----------------RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIH 306 (611)
T ss_dssp S----------------SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCC
T ss_pred C----------------CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCC
Confidence 5 7899999999999999999999999999999999999841 455667877
Q ss_pred -HHHHHHHhhCCCCcchhhccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchH
Q 004467 146 -ESKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGK 224 (752)
Q Consensus 146 -~~~~inkldg~~~~~~~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~ 224 (752)
.++++||+|-.++.. ..++ ...+.+..++..+|.... .
T Consensus 307 ~iIVVvNKiDl~~~~~-----------------------------~~~~----ei~~~l~~~l~~~g~~~~--~------ 345 (611)
T 3izq_1 307 NLIIAMNKMDNVDWSQ-----------------------------QRFE----EIKSKLLPYLVDIGFFED--N------ 345 (611)
T ss_dssp EEEEEEECTTTTTTCH-----------------------------HHHH----HHHHHHHHHHHHHTCCGG--G------
T ss_pred eEEEEEecccccchhH-----------------------------HHHH----HHHHHHHHHHHhhccccc--C------
Confidence 677789999322200 0011 112334555555444311 0
Q ss_pred HHHHHHHhccccchHHHHHHHHhcCCCchhhhhhhhhcccCCCCccccccccc--------ccCCCCCeEEEEEEEeecC
Q 004467 225 ALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIR--------NCDPNGPLMLYVSKMIPAS 296 (752)
Q Consensus 225 ~l~~~~~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~--------~~~~~~pl~~~V~Kv~~~~ 296 (752)
..++|++..--+.+.+..+.. ....||.|+...++++.+. ..+.+.|+.+.|..++..+
T Consensus 346 -------~~~i~vSA~tG~gI~el~~~~------~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r~~V~~v~~~~ 412 (611)
T 3izq_1 346 -------INWVPISGFSGEGVYKIEYTD------EVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSVLEIIPSK 412 (611)
T ss_dssp -------CEEEECCTTTCTTTSSCTTSC------TTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCCEEECCEEECCS
T ss_pred -------ccEEeeecccCCCccccCccc------cccccccCCcHHHHHHHHhhcccccCcccccccchhhheeeeeccC
Confidence 123444321122221111100 0123666655443333331 1135689999999998866
Q ss_pred ---CCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEe----cCceeeeccccCCCEEEE--eccc
Q 004467 297 ---DKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWM----GKKQETVEDVPCGNTVAM--VGLD 367 (752)
Q Consensus 297 ---~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~----g~~~~~V~ea~AGdIvai--~Gl~ 367 (752)
+.|+ ++.|||.+|+|++||.|.++|.+ . ..+|..|.... |..+.++++|.|||+|+| .|++
T Consensus 413 ~~~g~g~-v~~G~V~~G~lk~Gd~v~~~p~~----~-----~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~~~ 482 (611)
T 3izq_1 413 KTSNDLA-LVSGKLESGSIQPGESLTIYPSE----Q-----SCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAY 482 (611)
T ss_dssp SSCSSSS-EEEEEEEESEECTTCEEEETTTT----E-----EEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESSCC
T ss_pred ccCCCee-EEEEEEEeceeccCCEEEEecCC----c-----eEEEEEEEEcccccccccccccceecCCCcceEEeeecc
Confidence 3566 89999999999999999998643 1 25788887652 556789999999999998 4553
Q ss_pred cccccce-eeccCC
Q 004467 368 QFITKNA-TLTNEK 380 (752)
Q Consensus 368 ~~~~~tg-TL~~~~ 380 (752)
...+..| +|++++
T Consensus 483 ~~di~rGdvl~~~~ 496 (611)
T 3izq_1 483 PEDIQNGDLAASVD 496 (611)
T ss_dssp TTSCCTTCEEBCST
T ss_pred HhhCcceEEccCCC
Confidence 3334677 888766
No 23
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.95 E-value=3.3e-28 Score=272.23 Aligned_cols=286 Identities=18% Similarity=0.226 Sum_probs=180.3
Q ss_pred HHHHhhcc--cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCcccc----------CCC-------ccccCCchhHhHhcc
Q 004467 8 GLRRIMDF--KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-------VRMTDTRADEAERGI 68 (752)
Q Consensus 8 ~~~~~~~~--~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~----------~g~-------~~~~D~~~~E~eRgi 68 (752)
.+.+++.. .+..+||+++||+|||||||+++|++..+.+.... .|. ..++|.+++||+|||
T Consensus 11 ~i~~~l~~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGi 90 (434)
T 1zun_B 11 DILAYLGQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGI 90 (434)
T ss_dssp -----CCSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----C
T ss_pred hHHHHHhhcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCc
Confidence 34454443 24568999999999999999999999987654321 121 135899999999999
Q ss_pred eeccceEEEEEeeccchhccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHH
Q 004467 69 TIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASK 141 (752)
Q Consensus 69 Ti~s~~~~~~~~~~~~~~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~ 141 (752)
|++.+...+.+. ++.++|+|||||.+|..++.++++.+|++|+||||.+|+. .++..
T Consensus 91 Ti~~~~~~~~~~----------------~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~ 154 (434)
T 1zun_B 91 TIDVAYRYFSTA----------------KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL 154 (434)
T ss_dssp CCCCEEEEEECS----------------SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH
T ss_pred EEEeeeeEeecC----------------CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH
Confidence 999887766664 6899999999999999999999999999999999999854 45567
Q ss_pred hCCC-HHHHHHHhhCCCCcchhhccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHh
Q 004467 142 FGVD-ESKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKD 220 (752)
Q Consensus 142 ~~~p-~~~~inkldg~~~~~~~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~ 220 (752)
+++| .++++||+|-.++.. +.++. ..+.+..+++.++......
T Consensus 155 ~~~~~iIvviNK~Dl~~~~~-----------------------------~~~~~----i~~~~~~~~~~~g~~~~~~--- 198 (434)
T 1zun_B 155 LGIKHIVVAINKMDLNGFDE-----------------------------RVFES----IKADYLKFAEGIAFKPTTM--- 198 (434)
T ss_dssp TTCCEEEEEEECTTTTTSCH-----------------------------HHHHH----HHHHHHHHHHTTTCCCSEE---
T ss_pred cCCCeEEEEEEcCcCCcccH-----------------------------HHHHH----HHHHHHHHHHHhCCCccCc---
Confidence 7886 677889999322100 00111 1233445555544211100
Q ss_pred hchHHHHHHHHhccccchHHHHHHHHhcCCCchhhhhhhhhcccCCCCccccccccccc--CCCCCeEEEEEEEeecCCC
Q 004467 221 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNC--DPNGPLMLYVSKMIPASDK 298 (752)
Q Consensus 221 ~~~~~l~~~~~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~--~~~~pl~~~V~Kv~~~~~~ 298 (752)
.++|++..--+.+.+.. ....||.|+...++++.+..+ +.+.|+.+.|..++.....
T Consensus 199 ------------~~i~vSA~~g~gi~~~~---------~~~~w~~g~~L~~~l~~i~~~~~~~~~~~~~~v~~v~~~~~~ 257 (434)
T 1zun_B 199 ------------AFVPMSALKGDNVVNKS---------ERSPWYAGQSLMEILETVEIASDRNYTDLRFPVQYVNRPNLN 257 (434)
T ss_dssp ------------EEEECCTTTCTTTSSCC---------TTCTTCCSCCTTHHHHHSCCTTCCCSSSCEEECCEEECSSSS
T ss_pred ------------eEEEEeccCCCCccccc---------ccCccccCchHHHHHhcCCCcccCCCCCcEEEEEEEeccCCC
Confidence 12332210000100000 001245444333322222111 3467999999988765555
Q ss_pred CceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eec
Q 004467 299 GRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLT 377 (752)
Q Consensus 299 g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~Gl~~~~~~tg-TL~ 377 (752)
|+ ...|||.+|+|++||.|.+++.+ . ..+|..|.... .++++|.|||++++.+.+...++.| +|+
T Consensus 258 ~~-g~~G~v~~G~l~~gd~v~~~p~~----~-----~~~V~~i~~~~----~~~~~a~aG~~v~~~l~~~~~i~~G~~l~ 323 (434)
T 1zun_B 258 FR-GFAGTLASGIVHKGDEIVVLPSG----K-----SSRVKSIVTFE----GELEQAGPGQAVTLTMEDEIDISRGDLLV 323 (434)
T ss_dssp CC-EEEEECCBSCEETTCEEEETTTC----C-----EEEEEEEEETT----EEESEECTTCEEEEEESSCCCCCTTCEEE
T ss_pred ce-EEEEEEecceEeCCCEEEEecCC----e-----EEEEEEEEEcC----cceeEecCCCEEEEEeCCccccCCccEEE
Confidence 65 67899999999999999997632 1 25788877543 4799999999999986554434667 888
Q ss_pred cCC
Q 004467 378 NEK 380 (752)
Q Consensus 378 ~~~ 380 (752)
++.
T Consensus 324 ~~~ 326 (434)
T 1zun_B 324 HAD 326 (434)
T ss_dssp ETT
T ss_pred CCC
Confidence 765
No 24
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.94 E-value=3e-27 Score=281.36 Aligned_cols=277 Identities=20% Similarity=0.307 Sum_probs=176.8
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~ 95 (752)
.+..+||+++||+|||||||+++|+...........-..+.+|.+++|++||||++.+.+.+.+.
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~--------------- 357 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP--------------- 357 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECS---------------
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCC---------------
Confidence 35678999999999999999999986531000000001236899999999999999987766553
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCC-HHHHHHHhhCCCCcchhhcccc
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVD-ESKMMERLWGENFFDPATKKWT 167 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p-~~~~inkldg~~~~~~~~~~~~ 167 (752)
++.++|+|||||.+|..++.++++.+|++|+|||+.+|+. ..+...++| .++++||+|-.+-
T Consensus 358 -~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d--------- 427 (1289)
T 3avx_A 358 -TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDD--------- 427 (1289)
T ss_dssp -SCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCC---------
T ss_pred -CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccc---------
Confidence 6899999999999999999999999999999999999865 556678999 4778999992110
Q ss_pred ccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhH-hhchHHHHHHHHhccccchHHHHHHHH
Q 004467 168 TKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEK-DLMGKALMKRVMQTWLPASSALLEMMI 246 (752)
Q Consensus 168 ~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~-~~~~~~l~~~~~~~~~P~~~~LLd~i~ 246 (752)
. +.++. ..+.+.++++.++.......+ ..+...-... ...|...+..|++.+.
T Consensus 428 ------------------~---e~le~----i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng-~~~w~eGI~eLleaL~ 481 (1289)
T 3avx_A 428 ------------------E---ELLEL----VEMEVRELLSQYDFPGDDTPIVRGSALKALEG-DAEWEAKILELAGFLD 481 (1289)
T ss_dssp ------------------H---HHHHH----HHHHHHHHHHHTTSCTTTCCEEECCSTTTTTC-CHHHHHHHHHHHHHHH
T ss_pred ------------------h---hhHHH----HHHHHHHHHHhccccccceeEEEEEeccCCCC-CccccccchhhHhHHh
Confidence 0 00111 123345566654431100000 0000000000 0012223568999999
Q ss_pred hcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCC
Q 004467 247 FHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYV 326 (752)
Q Consensus 247 ~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~ 326 (752)
+++|.|.. +.++|+.+.|..++..++.|. +++|||++|+|++||.|.++|.+
T Consensus 482 ~~Ip~P~r-------------------------~~d~Pfr~pId~Vf~i~G~Gt-VvtGrV~sGtLkvGD~V~I~ps~-- 533 (1289)
T 3avx_A 482 SYIPEPER-------------------------AIDKPFLLPIEDVFSISGRGT-VVTGRVERGIIKVGEEVEIVGIK-- 533 (1289)
T ss_dssp HTSCCCCC-------------------------GGGSCCEEECCEEEEETTTEE-EEEEECCBSEEETTCEEEEESSS--
T ss_pred hhcCCCcc-------------------------ccccceeeeccccccccCCcE-EEEEEEeccEEecCCEEEEecCC--
Confidence 99987731 246789999999998888887 89999999999999999988643
Q ss_pred CCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEe--ccccccccce-eeccCC
Q 004467 327 PGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQFITKNA-TLTNEK 380 (752)
Q Consensus 327 ~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~--Gl~~~~~~tg-TL~~~~ 380 (752)
. ....+|..|.. ...++++|.|||+|++. |++...+..| +|+++.
T Consensus 534 --~---~~~~kVksI~~----~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~ 581 (1289)
T 3avx_A 534 --E---TQKSTCTGVEM----FRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 581 (1289)
T ss_dssp --S---CEEEEEEEEEC----SSCEESEEETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred --C---ceeEEEEEEee----cCceeeEEecCCcceeEeeecchhcCCcccEEecCC
Confidence 1 01257777753 24679999999999874 7755445777 888765
No 25
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.94 E-value=2e-27 Score=273.44 Aligned_cols=331 Identities=19% Similarity=0.221 Sum_probs=207.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccC--CCCC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG--ERNG 95 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~--~~~~ 95 (752)
+..+|+|+||+|||||||+++|+.... .++. .+|+|.+.+...+.|............ ..+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v------------~~~e----~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~ 67 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAV------------ASRE----AGGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHH------------SCC--------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGG
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccC------------cccc----CCceecccCeEEEeechhhhhcccccccccccc
Confidence 456899999999999999999975432 1211 157887776665555310000000000 0011
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhhCCCCcchhhccccc
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLWGENFFDPATKKWTT 168 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkldg~~~~~~~~~~~~~ 168 (752)
....++|+|||||.+|..++.++++.+|+||+|+|+++|++ .++...++|.++++||+|...-++.
T Consensus 68 ~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~------- 140 (594)
T 1g7s_A 68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRV------- 140 (594)
T ss_dssp TCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCC-------
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEeccccccccccc-------
Confidence 23469999999999999999999999999999999999865 6677889999999999993221110
Q ss_pred cCCCCccccCcceeeEe---chHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHH-HHhccccc-------
Q 004467 169 KNTGSATCKRGFVQFCY---EPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKR-VMQTWLPA------- 237 (752)
Q Consensus 169 ~~~g~~~~~~~fv~~~l---~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~-~~~~~~P~------- 237 (752)
. .+ ..|..... ..+.+.+...+ ..+...+...++. .+.+. .+.+. -...++|+
T Consensus 141 ~-~~-----~~~~e~sa~~~~~v~~~~~e~i----~ei~~~L~e~gl~--~e~~~----~l~~~~~~vpvv~vSA~tG~G 204 (594)
T 1g7s_A 141 H-EG-----RPFMETFSKQDIQVQQKLDTKV----YELVGKLHEEGFE--SERFD----RVTDFASQVSIIPISAITGEG 204 (594)
T ss_dssp C-TT-----CCHHHHHTTSCHHHHHHHHHHH----HHHHHHHHHTTCE--EEEGG----GCSCTTTEEEEEECCTTTCTT
T ss_pred c-cC-----CchHHHHHHhHHHHHHHHHHHH----HHHHHHHHHcCcc--hHHHH----HHHhccCcceEEEEeccCCCC
Confidence 0 00 00000000 00111111110 0111112221211 11000 00000 00123443
Q ss_pred hHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCE
Q 004467 238 SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLK 317 (752)
Q Consensus 238 ~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~ 317 (752)
++.||+.+..++|+|... -..+++++|+.++|++++.+++.|. ++++||++|+|++||.
T Consensus 205 I~eLl~~I~~~~~~~~~~--------------------~l~~~~~~p~~~~V~~~~~d~g~G~-v~~~rV~~G~Lk~Gd~ 263 (594)
T 1g7s_A 205 IPELLTMLMGLAQQYLRE--------------------QLKIEEDSPARGTILEVKEETGLGM-TIDAVIYDGILRKDDT 263 (594)
T ss_dssp HHHHHHHHHHHHHHHCSG--------------------GGEECTTSBCEEEEEEEEEETTEEE-EEEEEEEESEEETTCE
T ss_pred chhHHHHHHhhccccchh--------------------hhccccCCCceeEEEEEEEeCCcEE-EEEEEEeeCEEeeCCE
Confidence 678999999887755210 0112567899999999999998887 9999999999999999
Q ss_pred EEEccCCCCCCCcccceeeeeeeEEEEe--------cCceeeecccc--CCCEEEEeccccccccce-eeccCCCCCcc-
Q 004467 318 VRIMGPNYVPGEKKDLYVKSVQRTVIWM--------GKKQETVEDVP--CGNTVAMVGLDQFITKNA-TLTNEKEVDAH- 385 (752)
Q Consensus 318 v~i~~~n~~~~~~~~~~~~kv~~l~~~~--------g~~~~~V~ea~--AGdIvai~Gl~~~~~~tg-TL~~~~~~~~~- 385 (752)
|++.+.+ .. ...+|.+|+.+. +.+..++++|. ||+++++.||+++ .+| ||+... ...
T Consensus 264 v~~~~~~----~~---~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~~~l~~~--~~Gd~l~~~~--~~~~ 332 (594)
T 1g7s_A 264 IAMMTSK----DV---ISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGIDDV--MAGSPLRVVT--DPEK 332 (594)
T ss_dssp EEEEBSS----SE---EEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEECSSCTTB--CTTCEEEECS--SHHH
T ss_pred EEECCCC----Cc---eeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEEcccCCC--CCCCEEEecC--CHHH
Confidence 9986422 11 135899998873 66788999998 9999999999987 556 888765 210
Q ss_pred -------ccccccccCCceEEEEEEeCCCCCHhHHHHHHHHH
Q 004467 386 -------PIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRL 420 (752)
Q Consensus 386 -------~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L 420 (752)
.+..+... .+.+.+.|.+...+..+.|.++|+++
T Consensus 333 ~~~~~~~~~~~~~~~-~~~~~~~vkad~~gs~eal~~~l~~~ 373 (594)
T 1g7s_A 333 VREEILSEIEDIKID-TDEAGVVVKADTLGSLEAVVKILRDM 373 (594)
T ss_dssp HHHHHHHHHHTTSCB-CSSSCCEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccc-cccccEEEEeCCCCCHHHHHHHHHhC
Confidence 11222222 56677888889999999999999887
No 26
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.94 E-value=6.8e-27 Score=255.18 Aligned_cols=242 Identities=14% Similarity=0.129 Sum_probs=164.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
.+||+++||+|||||||+++|+ +||+|++.+...+.|. ++
T Consensus 21 m~~i~iiG~~d~GKSTL~~~L~------------------------~~giTi~~~~~~~~~~----------------~~ 60 (370)
T 2elf_A 21 MANVAIIGTEKSGRTSLAANLG------------------------KKGTSSDITMYNNDKE----------------GR 60 (370)
T ss_dssp EEEEEEEESTTSSHHHHHHTTS------------------------EEEEESSSEEEEECSS----------------SS
T ss_pred CCEEEEECCCCCCHHHHHHHHH------------------------hCCEEEEeeEEEEecC----------------Ce
Confidence 4599999999999999999994 6799999888776664 67
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCH-HHHHH-HhhCCCCcchhhcccccc
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDE-SKMME-RLWGENFFDPATKKWTTK 169 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~-~~~in-kldg~~~~~~~~~~~~~~ 169 (752)
.++|+|||||.||..++.++++.+|+||+||| .+|++ .++..+++|. ++++| |+|- +-
T Consensus 61 ~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~----------- 127 (370)
T 2elf_A 61 NMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HM----------- 127 (370)
T ss_dssp EEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CH-----------
T ss_pred EEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CH-----------
Confidence 89999999999999999999999999999999 88865 5567789998 88899 9992 10
Q ss_pred CCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhh-chHHHHHHHHhccccchHHHHHHHHhc
Q 004467 170 NTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDL-MGKALMKRVMQTWLPASSALLEMMIFH 248 (752)
Q Consensus 170 ~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~-~~~~l~~~~~~~~~P~~~~LLd~i~~~ 248 (752)
+.++.+ .+.+.++++..+... ..+.. +..++ ...|--.++.|++.+.++
T Consensus 128 --------------------~~~~~~----~~~i~~~l~~~~~~~--~~ii~~~~SA~----~~~~g~gi~~L~~~l~~~ 177 (370)
T 2elf_A 128 --------------------HAIDEL----KAKLKVITSGTVLQD--WECISLNTNKS----AKNPFEGVDELKARINEV 177 (370)
T ss_dssp --------------------HHHHHH----HHHHHHHTTTSTTTT--CEEEECCCCTT----SSSTTTTHHHHHHHHHHH
T ss_pred --------------------HHHHHH----HHHHHHHHHhcCCCc--eEEEecccccc----cCcCCCCHHHHHHHHHhh
Confidence 001110 122334443322110 00000 00000 000111346778888888
Q ss_pred CCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCC
Q 004467 249 LPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPG 328 (752)
Q Consensus 249 lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~ 328 (752)
+|+|..... +....|+.++|..++..++.|+ ++++||++|+|+.||+|++.+.+
T Consensus 178 ~~~~~~~~~---------------------~~~~~p~r~~v~~vf~~~~~G~-v~~g~v~~G~l~~gd~v~~~p~~---- 231 (370)
T 2elf_A 178 AEKIEAENA---------------------ELNSLPARIFIDHAFNVTGKGC-VVLGVVKQGISKDKDKTKIFPLD---- 231 (370)
T ss_dssp HHHHHHHHH---------------------HGGGSCCEEEEEEEECCC---C-EEEEEEEESEEETTCEEEEETTT----
T ss_pred ccccccCCc---------------------ccccccccccceeEEEcCCCce-EEEEEEECCEEeeCCEEEECCCC----
Confidence 776521000 0023566777777777778887 89999999999999999987632
Q ss_pred CcccceeeeeeeEEEEecCceeeeccccCCCEEEEe--ccccccccce-eecc
Q 004467 329 EKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQFITKNA-TLTN 378 (752)
Q Consensus 329 ~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~--Gl~~~~~~tg-TL~~ 378 (752)
. ..+|.+|.. + ..++++|.|||++++. |++...+++| +|++
T Consensus 232 ~-----~~~V~~i~~-~---~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~ 275 (370)
T 2elf_A 232 R-----DIEIRSIQS-H---DVDIDSAPAGTRVGMRLKNVQAKDIERGFIISD 275 (370)
T ss_dssp E-----EEEEEEEEE-T---TEEESEEETTCEEEEEEESCCGGGCCTTCEEES
T ss_pred c-----EEEEeEEEE-C---CCCccEEcCCCcceEEEeccCHHHcCCceEEEC
Confidence 1 268888754 2 3789999999999986 6544334677 8886
No 27
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.93 E-value=2.8e-26 Score=254.83 Aligned_cols=268 Identities=22% Similarity=0.275 Sum_probs=172.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCC---C
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGE---R 93 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~---~ 93 (752)
+..+||+++||+|||||||+++|+ | ..+|..++|++||||+..+...+.+...+.. ..+... .
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~-----------g--~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~-~~y~~~~~~~ 73 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALT-----------G--VWTDTHSEELRRGITIKIGFADAEIRRCPNC-GRYSTSPVCP 73 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHH-----------T--CCCC--CGGGGSCSSSCCEEEEEEEEECTTT-CCEESSSBCT
T ss_pred CCccEEEEECCCCCCHHHHHHHHh-----------C--CccccChhhhcCCcEEEEeeeeeeccccccc-cccccccccc
Confidence 567899999999999999999994 3 2467888999999999998877766321000 000000 0
Q ss_pred -CCC----ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhH-H-------HHHHHhCC-CHHHHHHHhhCCCCc
Q 004467 94 -NGN----EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-C-------MYASKFGV-DESKMMERLWGENFF 159 (752)
Q Consensus 94 -~~~----~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv-~-------~~~~~~~~-p~~~~inkldg~~~~ 159 (752)
.+. .+.++|+|||||.+|..++.++++.+|+||+||||.+|+ + .++..+++ |.++++||+|-.+.
T Consensus 74 ~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~- 152 (410)
T 1kk1_A 74 YCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDK- 152 (410)
T ss_dssp TTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH-
T ss_pred ccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCH-
Confidence 011 278999999999999999999999999999999999885 2 45566777 46677899992111
Q ss_pred chhhccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHHhccccc--
Q 004467 160 DPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPA-- 237 (752)
Q Consensus 160 ~~~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~~~P~-- 237 (752)
+ . .. ...+.+.++++..... . ..++|+
T Consensus 153 --------------------------~---~-~~----~~~~~i~~~l~~~~~~----~-------------~~~i~vSA 181 (410)
T 1kk1_A 153 --------------------------E---K-AL----ENYRQIKEFIEGTVAE----N-------------APIIPISA 181 (410)
T ss_dssp --------------------------H---H-HH----HHHHHHHHHHTTSTTT----T-------------CCEEECBT
T ss_pred --------------------------H---H-HH----HHHHHHHHHHHhcCcC----C-------------CeEEEeeC
Confidence 0 0 00 0012233444331100 0 012332
Q ss_pred -----hHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeec--------CCCCceeEE
Q 004467 238 -----SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPA--------SDKGRFFAF 304 (752)
Q Consensus 238 -----~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~--------~~~g~~v~~ 304 (752)
++.|++.+.+.+|.|.. +.+.|+.++|.+++.. ++.|. +++
T Consensus 182 ~~g~gi~~L~~~l~~~~~~p~~-------------------------~~~~~~~~~v~~~f~v~~~g~~~~~~~G~-v~~ 235 (410)
T 1kk1_A 182 LHGANIDVLVKAIEDFIPTPKR-------------------------DPNKPPKMLVLRSFDVNKPGTPPEKLVGG-VLD 235 (410)
T ss_dssp TTTBSHHHHHHHHHHHSCCCCC-------------------------CTTSCCEEEEEEEECCSCCC----CCCCC-EEE
T ss_pred CCCCCHHHHHHHHHHhCCCCcc-------------------------ccCCCcEEEEEEEEeccCCCccccCCceE-EEE
Confidence 57899999998987731 2457888888887643 34676 899
Q ss_pred EEEEeeeecCCCEEEEccCCCC-CCCcccc--eeeeeeeEEEEecCceeeeccccCCCEEEEe-cccc----ccccce-e
Q 004467 305 GRVFSGKVSTGLKVRIMGPNYV-PGEKKDL--YVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-GLDQ----FITKNA-T 375 (752)
Q Consensus 305 ~RV~SGtL~~Gd~v~i~~~n~~-~~~~~~~--~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~-Gl~~----~~~~tg-T 375 (752)
+||++|+|++||.|.+++.+.. ......+ ...+|..|+. ...++++|.|||++++. +++. ..+..| .
T Consensus 236 g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~----~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~v 311 (410)
T 1kk1_A 236 GSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQA----GGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNV 311 (410)
T ss_dssp EEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEE----TTEEESEECSSSCEEEEESSCGGGTGGGTTTTCE
T ss_pred EEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEEE----CCeEecEEcCCCEEEEEEecCcccchhhccceeE
Confidence 9999999999999998752200 0000000 1245555552 35789999999998885 3321 112345 6
Q ss_pred eccCC
Q 004467 376 LTNEK 380 (752)
Q Consensus 376 L~~~~ 380 (752)
|+++.
T Consensus 312 l~~~~ 316 (410)
T 1kk1_A 312 VGKPG 316 (410)
T ss_dssp EECTT
T ss_pred EecCC
Confidence 66554
No 28
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.92 E-value=6.7e-25 Score=243.54 Aligned_cols=268 Identities=19% Similarity=0.261 Sum_probs=168.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCC--CC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGE--RN 94 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~--~~ 94 (752)
+..+||+++||+|||||||+++|. | ..+|..++|++||||+..+...+.+...+. ...+... ..
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~-----------g--~~~~~~~~e~~~giTi~~~~~~~~~~~~~~-~~~y~~~~~~~ 71 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALT-----------G--VWTDRHSEELRRGISIRLGYADCEIRKCPQ-CGTYTTKPRCP 71 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHH-----------S--CCCCC-------CCCCCCEEEEEEEEECTT-TCCEESSSBCT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHh-----------C--CccccCcccccCCcEEEecccccccccccc-ccccccccccc
Confidence 457899999999999999999994 3 246788999999999998876655431000 0000000 00
Q ss_pred --C----CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhH-H-------HHHHHhCC-CHHHHHHHhhCCCCc
Q 004467 95 --G----NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-C-------MYASKFGV-DESKMMERLWGENFF 159 (752)
Q Consensus 95 --~----~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv-~-------~~~~~~~~-p~~~~inkldg~~~~ 159 (752)
+ ..+.++|+|||||.+|..++.++++.+|++|+||||.+|+ . ..++.+++ |.++++||+|-.+..
T Consensus 72 ~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 72 NCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp TSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTT
T ss_pred ccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHH
Confidence 1 1278999999999999999999999999999999999875 2 44556776 567888999922110
Q ss_pred chhhccccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHHhccccc--
Q 004467 160 DPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPA-- 237 (752)
Q Consensus 160 ~~~~~~~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~~~P~-- 237 (752)
.. ...+ +.+.++++..... . ..++|+
T Consensus 152 ~~---------------------------~~~~--------~~i~~~l~~~~~~----~-------------~~~i~vSA 179 (408)
T 1s0u_A 152 QA---------------------------EENY--------EQIKEFVKGTIAE----N-------------APIIPISA 179 (408)
T ss_dssp TT---------------------------TTHH--------HHHHHHHTTSTTT----T-------------CCEEEC--
T ss_pred HH---------------------------HHHH--------HHHHHHHhhcCCC----C-------------CeEEEeeC
Confidence 00 0001 1233344331100 0 012332
Q ss_pred -----hHHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecC--------CCCceeEE
Q 004467 238 -----SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPAS--------DKGRFFAF 304 (752)
Q Consensus 238 -----~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~--------~~g~~v~~ 304 (752)
++.|++.+.+.+|.|.. +.+.|+.++|.+++... +.|. ++.
T Consensus 180 ~~g~gi~~L~~~l~~~i~~~~~-------------------------~~~~~~~~~v~~~f~v~~~g~~~~~~~G~-v~~ 233 (408)
T 1s0u_A 180 HHEANIDVLLKAIQDFIPTPKR-------------------------DPDATPRMYVARSFDINKPGTEIKDLKGG-VLG 233 (408)
T ss_dssp ----CHHHHHHHHHHHSCCCCC-------------------------CTTSCCEEEEEEEECCCCSSCCGGGCCCC-EEE
T ss_pred CCCCCHHHHHHHHHHhCCCCcc-------------------------cCCCCeEEEEEEEEeecCCCcccccCcee-EEE
Confidence 46889999988887721 34678999998877532 3565 899
Q ss_pred EEEEeeeecCCCEEEEccCCCC-CCCcccc--eeeeeeeEEEEecCceeeeccccCCCEEEEec-----cccccccce-e
Q 004467 305 GRVFSGKVSTGLKVRIMGPNYV-PGEKKDL--YVKSVQRTVIWMGKKQETVEDVPCGNTVAMVG-----LDQFITKNA-T 375 (752)
Q Consensus 305 ~RV~SGtL~~Gd~v~i~~~n~~-~~~~~~~--~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~G-----l~~~~~~tg-T 375 (752)
|||++|+|++||.|.+++.+.. ......+ ...+|..|+. ...++++|.|||++++.. ++...+..| .
T Consensus 234 g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~----~~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~v 309 (408)
T 1s0u_A 234 GAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAA----GNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSV 309 (408)
T ss_dssp EEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEE----TTEEESEECSSSCEEEECSSCGGGTGGGTTTTCE
T ss_pred EEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEE----CCEEcCEEeCCCeEEEEeccCcccchhhccceeE
Confidence 9999999999999998753210 0000001 1357777764 346799999999999842 222223455 6
Q ss_pred eccCC
Q 004467 376 LTNEK 380 (752)
Q Consensus 376 L~~~~ 380 (752)
|++++
T Consensus 310 l~~~~ 314 (408)
T 1s0u_A 310 VGLPG 314 (408)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 66654
No 29
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.91 E-value=3.8e-26 Score=258.02 Aligned_cols=246 Identities=24% Similarity=0.362 Sum_probs=161.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+..||+++||+|||||||+++|+... ....+|..++|++||+|++.....+.+.
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~---------~~~~~d~~~~e~~~GiTi~~~~~~~~~~---------------- 71 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIA---------STSAHDKLPESQKRGITIDIGFSAFKLE---------------- 71 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC-----------------------------CCCEEEET----------------
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCC---------cccccccccccccCccEEecceEEEEEC----------------
Confidence 346799999999999999999995221 1246899999999999999998888775
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhhCCCCcchhhcccccc
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLWGENFFDPATKKWTTK 169 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkldg~~~~~~~~~~~~~~ 169 (752)
++.++|+|||||.+|..++.++++.+|++|+||||.+|++ .+++.+++|.++++||+|-.+-
T Consensus 72 ~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~----------- 140 (482)
T 1wb1_A 72 NYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGT----------- 140 (482)
T ss_dssp TEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCH-----------
T ss_pred CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccc-----------
Confidence 6899999999999999999999999999999999999764 5667789999999999992110
Q ss_pred CCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHc-CCCCChhhHhhchHHHHHHHHhccccc-------hHHH
Q 004467 170 NTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKL-GVTMKSEEKDLMGKALMKRVMQTWLPA-------SSAL 241 (752)
Q Consensus 170 ~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l-~~~l~~~~~~~~~~~l~~~~~~~~~P~-------~~~L 241 (752)
+.++. ..+.+.++++.. +.. . ..++|+ ++.|
T Consensus 141 --------------------~~~~~----~~~~l~~~l~~~~~~~--~---------------~~ii~vSA~~g~gI~~L 179 (482)
T 1wb1_A 141 --------------------EEIKR----TEMIMKSILQSTHNLK--N---------------SSIIPISAKTGFGVDEL 179 (482)
T ss_dssp --------------------HHHHH----HHHHHHHHHHHSSSGG--G---------------CCEEECCTTTCTTHHHH
T ss_pred --------------------hhHHH----HHHHHHHHHhhhcccc--c---------------ceEEEEECcCCCCHHHH
Confidence 00111 122344455442 111 0 012332 4677
Q ss_pred HHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEc
Q 004467 242 LEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIM 321 (752)
Q Consensus 242 Ld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~ 321 (752)
++.+.+.+|.|. +. .+.++|+.+.|..++..++.|. ++++||.+|+|++||.|.++
T Consensus 180 ~~~L~~~i~~~~----------~~-------------~~~~~~~~~~v~~v~~~~g~G~-v~~g~v~~G~l~~gd~v~~~ 235 (482)
T 1wb1_A 180 KNLIITTLNNAE----------II-------------RNTESYFKMPLDHAFPIKGAGT-VVTGTINKGIVKVGDELKVL 235 (482)
T ss_dssp HHHHHHHHHHSC----------CC-------------CCSSSCCBCBCSCEECCSSCCC-EECCCCCBSCCCSSEEECCT
T ss_pred HHHHHHhhcCcc----------cc-------------ccccccccccceeEEEecCCce-EEEEEEEEeEEeeCCEEEEC
Confidence 888877665331 00 0245677777877777778887 88999999999999999987
Q ss_pred cCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEe--ccccccccce-ee
Q 004467 322 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQFITKNA-TL 376 (752)
Q Consensus 322 ~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~--Gl~~~~~~tg-TL 376 (752)
+.+ .. .+|..|.. ...++++|.|||.+++. |++...+..| +|
T Consensus 236 p~~----~~-----~~V~~i~~----~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl 280 (482)
T 1wb1_A 236 PIN----MS-----TKVRSIQY----FKESVMEAKAGDRVGMAIQGVDAKQIYRGXIL 280 (482)
T ss_dssp TTC----CC-----EEECCBCG----GGSCBCCCCSSCCCCEECSSCCSSCCCSSCBC
T ss_pred CCC----cE-----EEEeEEEE----CCeEeeEecCCCEEEEEecCCCHhhccccceE
Confidence 532 11 46666553 34679999999998874 7665444667 66
No 30
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.89 E-value=3e-23 Score=229.81 Aligned_cols=268 Identities=17% Similarity=0.162 Sum_probs=168.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC--ccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD--VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~--~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~ 94 (752)
+...+|+++||+|||||||+++|+...... ..|. .........+..++++.......+.+.+ ..
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 71 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSK---KLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDD-----------EP 71 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCS---SSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCS-----------CC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccc---ccCccccceeeccccccccceecccccccccccc-----------cc
Confidence 456799999999999999999996422111 1121 1111223344466666654432221110 01
Q ss_pred CCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhH-H-------HHHHHhCC-CHHHHHHHhhCCCCcchhhcc
Q 004467 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-C-------MYASKFGV-DESKMMERLWGENFFDPATKK 165 (752)
Q Consensus 95 ~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv-~-------~~~~~~~~-p~~~~inkldg~~~~~~~~~~ 165 (752)
...+.++|+|||||.+|..++.++++.+|++|+||||.+|. . ..+..+++ |.++++||+|-.+.
T Consensus 72 ~~~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~------- 144 (403)
T 3sjy_A 72 KFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSK------- 144 (403)
T ss_dssp EEEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH-------
T ss_pred cccceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccch-------
Confidence 12379999999999999999999999999999999999986 2 55566776 67888899992111
Q ss_pred ccccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHHhccccc-------h
Q 004467 166 WTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPA-------S 238 (752)
Q Consensus 166 ~~~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~~~P~-------~ 238 (752)
+...+. .+.+.++++..+.. . ..++|+ +
T Consensus 145 --------------------~~~~~~--------~~~i~~~l~~~~~~--~---------------~~ii~vSA~~g~gi 179 (403)
T 3sjy_A 145 --------------------EEALSQ--------YRQIKQFTKGTWAE--N---------------VPIIPVSALHKINI 179 (403)
T ss_dssp --------------------HHHHHH--------HHHHHHHHTTSTTT--T---------------CCEEECBTTTTBSH
T ss_pred --------------------HHHHHH--------HHHHHHHHHhhCCC--C---------------CEEEEEECCCCcCh
Confidence 000000 11233333332111 0 012332 5
Q ss_pred HHHHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecC--------CCCceeEEEEEEee
Q 004467 239 SALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPAS--------DKGRFFAFGRVFSG 310 (752)
Q Consensus 239 ~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~--------~~g~~v~~~RV~SG 310 (752)
+.|++.+.+.+|.|.. +.+.|+.++|.+++... +.|. +++|||++|
T Consensus 180 ~~L~~~l~~~l~~~~~-------------------------~~~~~~~~~v~~~~~v~~~~~~~~~~~G~-v~~g~v~~G 233 (403)
T 3sjy_A 180 DSLIEGIEEYIKTPYR-------------------------DLSQKPVMLVIRSFDVNKPGTQFNELKGG-VIGGSIIQG 233 (403)
T ss_dssp HHHHHHHHHHSCCCCC-------------------------CTTSCCEEEEEEEECCCCTTCCSSSCCCC-EEEEEEEES
T ss_pred HHHHHHHHHhCCCCCC-------------------------CCCCCcEEEEEEEEeecCCCcccccCcCc-EEEEEEEeC
Confidence 7899999988887731 34678999999887533 3676 899999999
Q ss_pred eecCCCEEEEccCCCCC-CCcccc--eeeeeeeEEEEecCceeeeccccCCCEEEEe-----ccccccccce-eeccCC
Q 004467 311 KVSTGLKVRIMGPNYVP-GEKKDL--YVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-----GLDQFITKNA-TLTNEK 380 (752)
Q Consensus 311 tL~~Gd~v~i~~~n~~~-~~~~~~--~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~-----Gl~~~~~~tg-TL~~~~ 380 (752)
+|+.||+|.++|.+... .....+ ...+|..|+. ...++++|.|||++++. +++.-.+..| .|++++
T Consensus 234 ~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~----~~~~~~~a~~G~~v~~~l~~~~~~~~~d~~~G~vl~~~~ 308 (403)
T 3sjy_A 234 LFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRF----GDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITLAD 308 (403)
T ss_dssp CEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEE----TTEEESEECSSSCEEEEESSCHHHHGGGTTTTCEEEETT
T ss_pred EEecCCEEEEeCCcccccccccccccccEEEEEEEE----CCEEcCEEeCCCEEEEEeccccccchhhhccccEEeCCC
Confidence 99999999987532000 000000 1247777764 45789999999999984 2222223445 777655
No 31
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.89 E-value=3.3e-25 Score=248.87 Aligned_cols=289 Identities=18% Similarity=0.207 Sum_probs=190.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+.++|+++||+|||||||+++|+...- . .+ ..+|||++.....+.|.
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v--~---~~-----------e~~GIT~~i~~~~v~~~---------------- 49 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKV--A---SG-----------EAGGITQHIGAYHVETE---------------- 49 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHH--S---BT-----------TBCCCCCCSSCCCCCTT----------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCC--c---cc-----------cCCCeeEeEEEEEEEEC----------------
Confidence 4678999999999999999999975321 0 11 13689988877655543
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhhCC--CCcchhhcccc
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLWGE--NFFDPATKKWT 167 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkldg~--~~~~~~~~~~~ 167 (752)
++.++|+|||||.+|...+.++++.+|++|||||+.+|+. .++...++|.++++||+|.. +....... +.
T Consensus 50 ~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~-l~ 128 (501)
T 1zo1_I 50 NGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNE-LS 128 (501)
T ss_dssp SSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCC-CC
T ss_pred CEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHH-HH
Confidence 5789999999999999999999999999999999999876 56677899999999999932 22111100 00
Q ss_pred ccCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHHhccccc-------hHH
Q 004467 168 TKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPA-------SSA 240 (752)
Q Consensus 168 ~~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~~~P~-------~~~ 240 (752)
. ..+ +.+..+... .++|+ ++.
T Consensus 129 ~---------~~~-------------------------~~~~~~~~~------------------~~v~vSAktG~gI~e 156 (501)
T 1zo1_I 129 Q---------YGI-------------------------LPEEWGGES------------------QFVHVSAKAGTGIDE 156 (501)
T ss_dssp C---------CCC-------------------------CTTCCSSSC------------------EEEECCTTTCTTCTT
T ss_pred H---------hhh-------------------------hHHHhCCCc------------------cEEEEeeeeccCcch
Confidence 0 000 000000000 11221 245
Q ss_pred HHHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEE
Q 004467 241 LLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRI 320 (752)
Q Consensus 241 LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i 320 (752)
|++.+......+. ...+++.|+.++|++++.+++.|. ++++||++|+|++||.|.+
T Consensus 157 Lle~I~~~~~~~~-----------------------~~~~~~~~~~~~V~e~~~d~g~G~-v~~~~V~~Gtlk~Gd~v~~ 212 (501)
T 1zo1_I 157 LLDAILLQAEVLE-----------------------LKAVRKGMASGAVIESFLDKGRGP-VATVLVREGTLHKGDIVLC 212 (501)
T ss_dssp HHHHTTTTCCCST-----------------------TTSCCCSBCEEEEEEEEECSSSSE-EEEEEEEESBCCTTCEEEE
T ss_pred hhhhhhhhhhhhc-----------------------cccccccccccceEEEEEeCCcEE-EEEEEEEeeEEecCCEEEE
Confidence 6666543211110 001456789999999999888887 9999999999999999986
Q ss_pred ccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeccCCCC-Ccc-------------
Q 004467 321 MGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEV-DAH------------- 385 (752)
Q Consensus 321 ~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~Gl~~~~~~tg-TL~~~~~~-~~~------------- 385 (752)
.+ . . .+|.. +.+.+..++++|.||+.+.+.|+++.. ..| +++..... ...
T Consensus 213 g~-~-----~-----~kVr~---i~~~~g~~v~~a~~g~~V~i~gl~~~~-~~Gd~~~~~~~~~~a~~~~~~r~~~~~~~ 277 (501)
T 1zo1_I 213 GF-E-----Y-----GRVRA---MRNELGQEVLEAGPSIPVEILGLSGVP-AAGDEVTVVRDEKKAREVALYRQGKFREV 277 (501)
T ss_dssp EB-S-----S-----CEEEE---ECCTTTTSEEEECCSSCSSSEEECSCC-CTTEEEEEECSSCTTBCSSCBTTCCCCSH
T ss_pred cc-c-----e-----eEEEE---EEecCCCcCcEeccCCcEEEeCCCCCC-CCCCEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 32 1 1 24444 444444679999999999999988742 234 44432210 000
Q ss_pred --------cccc----ccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCeEEE
Q 004467 386 --------PIRA----MKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVC 429 (752)
Q Consensus 386 --------~~~~----~~~~~~Pv~~~~i~p~~~~d~~kL~~~L~~L~~eDPsl~v 429 (752)
.+.. +.....+.+.+.|.+...+..+.|.++|.+|..+++.+.+
T Consensus 278 ~~~~~~~~~l~~~~~~~~~~~~~~~~~ivkad~~gs~ea~~~~l~~~~~~~~~~~v 333 (501)
T 1zo1_I 278 KLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKI 333 (501)
T ss_dssp HHHHHHHHHHSSTTTSCSSCCCCCCCCBCCCSCHHHHHHHHHHHTTTTCCCSBCCC
T ss_pred HHhhhhhhcHHHHHhhhhccCCceEEEEEEECCcCCHHHHHHHHHhhcccccceEE
Confidence 0111 1111245677788888888889999999988877766655
No 32
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.85 E-value=2.7e-23 Score=235.23 Aligned_cols=240 Identities=20% Similarity=0.208 Sum_probs=165.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
+...|+++||+|||||||+++|....-. .+...|+|.+.....+.+. ++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~----------------~~~~~giT~~i~~~~v~~~---------------~g 51 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVA----------------AMEAGGITQHIGAFLVSLP---------------SG 51 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHH----------------HSSSCCBCCCTTSCCBCSS---------------CS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc----------------cccCCceeEEEeEEEEEeC---------------CC
Confidence 3456899999999999999999644311 1123477877766554442 25
Q ss_pred eEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhhCCC--Ccchhhccccc
Q 004467 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLWGEN--FFDPATKKWTT 168 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkldg~~--~~~~~~~~~~~ 168 (752)
+.++|+|||||.+|...+.++++.+|++|+|+|+.+|+. ..+...++|.++++||+|... .....
T Consensus 52 ~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~------ 125 (537)
T 3izy_P 52 EKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVK------ 125 (537)
T ss_dssp SCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSS------
T ss_pred CEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHH------
Confidence 689999999999999999999999999999999999866 566778999999999999221 10000
Q ss_pred cCCCCccccCcceeeEechHHHHHHHhhccchhhHHHHHHHcCCCCChhhHhhchHHHHHHHHhccccc-------hHHH
Q 004467 169 KNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPA-------SSAL 241 (752)
Q Consensus 169 ~~~g~~~~~~~fv~~~l~~i~~l~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~l~~~~~~~~~P~-------~~~L 241 (752)
..+ ...+......... ..++|+ ++.|
T Consensus 126 --------------------------------~~l----~~~~~~~e~~~~~-----------~~iv~vSAktG~GI~eL 158 (537)
T 3izy_P 126 --------------------------------KEL----LAYDVVCEDYGGD-----------VQAVHVSALTGENMMAL 158 (537)
T ss_dssp --------------------------------SHH----HHTTSCCCCSSSS-----------EEECCCCSSSSCSSHHH
T ss_pred --------------------------------HHH----HhhhhhHHhcCCC-----------ceEEEEECCCCCCchhH
Confidence 000 0000000000000 012332 4667
Q ss_pred HHHHHhcCCCchhhhhhhhhcccCCCCcccccccccccCCCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEc
Q 004467 242 LEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIM 321 (752)
Q Consensus 242 Ld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~i~~~~~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~ 321 (752)
++.+...++.+.. ..+++.|+.+.|++++.+++.|. +++++|++|+|++||.+..
T Consensus 159 le~I~~l~~~~~~-----------------------~~~~~~~~~~~V~e~~~~~g~G~-V~~g~V~~G~l~~Gd~v~~- 213 (537)
T 3izy_P 159 AEATIALAEMLEL-----------------------KADPTGAVEGTVIESFTDKGRGP-VTTAIIQRGTLRKGSILVA- 213 (537)
T ss_dssp HHHHHHHHTTCCC-----------------------CCCSSSSEEEEEEEECCCTTCCC-CEEEEEEEECCSSEEEECC-
T ss_pred HHHHHHhhhcccc-----------------------cCCCCCCcceeEEEEEEeCCCce-EEEEEEecCEEEcCCEEEe-
Confidence 7777765443210 01467899999999999998887 9999999999999998852
Q ss_pred cCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEeccccccccce-eeccCC
Q 004467 322 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEK 380 (752)
Q Consensus 322 ~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~Gl~~~~~~tg-TL~~~~ 380 (752)
+ .. ..+|..++...| .++++|.||++|+|.|+++.. ..| +|+..+
T Consensus 214 g------~~----~~kVr~i~~~~g---~~v~~A~~G~~V~i~g~~~~~-~~Gd~l~~~~ 259 (537)
T 3izy_P 214 G------KS----WAKVRLMFDENG---RAVNEAYPSMPVGIIGWRDLP-SAGDEILEVE 259 (537)
T ss_dssp S------SC----CEEEEEEEECCC---CCSCCSCCSTTCCCCSSEEEE-EEESSCCSCC
T ss_pred C------Cc----eEEEEEEEcCCC---CCCcEEcCCCEEEEECCCCCC-CCCCEEEecC
Confidence 1 11 146766664443 679999999999999999753 345 777764
No 33
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.29 E-value=1.1e-12 Score=139.07 Aligned_cols=107 Identities=21% Similarity=0.121 Sum_probs=78.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+..+|+|+|++|+|||||+++|+.....+.....+ .|.......+.+ +
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~---------------tTr~~i~~i~~~----------------~ 53 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQ---------------TTRKRLRGILTE----------------G 53 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSC---------------CCCSCEEEEEEE----------------T
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCC---------------ceeEEEEEEEEe----------------C
Confidence 456789999999999999999998554332211122 122111111233 3
Q ss_pred ceEEEEEcCCCCcc--------cHHHHHHHHHhhcceEEEEecchhHH-------HHHHHh--CCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVC-------MYASKF--GVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~d--------f~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~--~~p~~~~inkld 154 (752)
+++++|+||||+.+ |...+..+++.+|++++|+|++.+.. ..+.+. ++|+++++||+|
T Consensus 54 ~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~D 128 (301)
T 1wf3_A 54 RRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLD 128 (301)
T ss_dssp TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGG
T ss_pred CcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcc
Confidence 78999999999887 77888899999999999999987643 334455 899999999999
No 34
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.25 E-value=2.6e-12 Score=133.16 Aligned_cols=108 Identities=11% Similarity=0.073 Sum_probs=76.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
....+|+|+|+.|+|||||+++|+.....+.. .+ .+++|.......+.|.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~--~~------------~~~~t~~~~~~~~~~~---------------- 69 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESK--LG------------SQTLTKTCSKSQGSWG---------------- 69 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCC--TT------------SCCCCCSCEEEEEEET----------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccC--CC------------CCceeeeeEEEEEEeC----------------
Confidence 45689999999999999999999866544332 11 1135666655566664
Q ss_pred ceEEEEEcCCCCcccHH-----------HHHHHHHhhcceEEEEecch-hHH-----HHHHHh-----CCCHHHHHH-Hh
Q 004467 97 EYLINLIDSPGHVDFSS-----------EVTAALRITDGALVVVDCIE-GVC-----MYASKF-----GVDESKMME-RL 153 (752)
Q Consensus 97 ~~~inliDtPGh~df~~-----------e~~~~l~~~D~avlvvda~~-Gv~-----~~~~~~-----~~p~~~~in-kl 153 (752)
++.++|+|||||.+|.. .+..+++.+|++|+|+|+.. ... .++.++ +.|.++++| |+
T Consensus 70 ~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~ 149 (260)
T 2xtp_A 70 NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKE 149 (260)
T ss_dssp TEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGG
T ss_pred CCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEccc
Confidence 78999999999988732 23336678999999999975 111 334443 567777776 99
Q ss_pred h
Q 004467 154 W 154 (752)
Q Consensus 154 d 154 (752)
|
T Consensus 150 D 150 (260)
T 2xtp_A 150 D 150 (260)
T ss_dssp G
T ss_pred c
Confidence 8
No 35
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.18 E-value=2.2e-12 Score=142.45 Aligned_cols=108 Identities=17% Similarity=0.167 Sum_probs=77.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
...++|+|+||.|+|||||+++|+... ....+..+|+|++.....+.+. .
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~---------------~~~~~~~~gtT~d~~~~~~~~~---------------~ 81 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQN---------------VSIVSDYAGTTTDPVYKSMELH---------------P 81 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC----------------------------CCCCEEEEEET---------------T
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCC---------------CCccCCCCCeeeeeEEEEEEEC---------------C
Confidence 567899999999999999999984221 1223456788998888877775 2
Q ss_pred ceEEEEEcCCCCcccHH-------HHHHHHHhhcceEEEEecchhHH-----HHHHHhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSS-------EVTAALRITDGALVVVDCIEGVC-----MYASKFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~-------e~~~~l~~~D~avlvvda~~Gv~-----~~~~~~~~p~~~~inkld 154 (752)
...++|+|||||.||.. .+...++.+|++|+|+|+...-. ..+.+.++|.++++||+|
T Consensus 82 ~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~~~~~~l~~l~~~~~piIvV~NK~D 151 (423)
T 3qq5_A 82 IGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKID 151 (423)
T ss_dssp TEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEECCCCT
T ss_pred CCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChHHHHHHHHHHHhcCCCEEEEEeCcC
Confidence 34899999999998853 35667788999999999932211 666778999999999998
No 36
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.16 E-value=1.3e-11 Score=131.19 Aligned_cols=109 Identities=20% Similarity=0.222 Sum_probs=78.1
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~ 95 (752)
+...-.|+|+|++|+|||||+++|+...-.+..... +.|.......+.+.
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~---------------~tT~~~~~~~~~~~--------------- 56 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKA---------------GTTRMRVLGVKNIP--------------- 56 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSS---------------CCCCSCEEEEEEET---------------
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCC---------------CceeeEEEEEEecC---------------
Confidence 344568999999999999999999754332221111 23433333223331
Q ss_pred CceEEEEEcCCCCcccH----------HHHHHHHHhhcceEEEEecchhHH--------HHHHHhCCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHVDFS----------SEVTAALRITDGALVVVDCIEGVC--------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~df~----------~e~~~~l~~~D~avlvvda~~Gv~--------~~~~~~~~p~~~~inkld 154 (752)
.+++++|+||||+.++. ..+..+++.+|++|+|+|+..+.. ..+...++|.++++||+|
T Consensus 57 ~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~D 133 (308)
T 3iev_A 57 NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKID 133 (308)
T ss_dssp TTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGG
T ss_pred CCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECcc
Confidence 26899999999996654 677889999999999999998743 233456899999999999
No 37
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.15 E-value=1.2e-11 Score=129.05 Aligned_cols=105 Identities=14% Similarity=0.222 Sum_probs=78.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
++++|+++|+.|+|||||+++|.... .. .| ...|+|+......+.|. +
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~---~~--~~-----------~~~~~t~~~~~~~~~~~----------------~ 49 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLR---QH--VG-----------NWPGVTVEKKEGIMEYR----------------E 49 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTC---EE--EE-----------ECTTSSCEEEEEEEEET----------------T
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCC---cc--cC-----------CCCCeEEEeeEEEEEEC----------------C
Confidence 46899999999999999999995321 11 11 12366777666666664 6
Q ss_pred eEEEEEcCCCCcccHHHHHHH------H--HhhcceEEEEecchhHH-----HHHHHhC-CCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDFSSEVTAA------L--RITDGALVVVDCIEGVC-----MYASKFG-VDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~------l--~~~D~avlvvda~~Gv~-----~~~~~~~-~p~~~~inkld 154 (752)
+.++++||||+.+|....... + ..+|++++|+|++.+.. ..+...+ +|+++++||+|
T Consensus 50 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 120 (271)
T 3k53_A 50 KEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFD 120 (271)
T ss_dssp EEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHH
T ss_pred ceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChh
Confidence 789999999999886532211 1 35999999999999755 4455677 99999999999
No 38
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.15 E-value=2.3e-12 Score=136.66 Aligned_cols=105 Identities=14% Similarity=0.073 Sum_probs=72.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
+..+|+|+||+|+|||||+++|+...-.+..... +.|.......+.+ ++
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~---------------~tTr~~~~gi~~~----------------~~ 55 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKA---------------QTTRHRIVGIHTE----------------GA 55 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCS---------------SCCSSCEEEEEEE----------------TT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCC---------------CcceeeEEEEEEE----------------CC
Confidence 4568999999999999999999754321111111 1222111111333 26
Q ss_pred eEEEEEcCCCCc---------ccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHV---------DFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~---------df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
+.++++|||||. +|...+..+++.+|++++|+|+.. +. ..+...+.|.++++||+|
T Consensus 56 ~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D 127 (301)
T 1ega_A 56 YQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVD 127 (301)
T ss_dssp EEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTT
T ss_pred eeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcc
Confidence 899999999997 344445677889999999999965 32 334445899999999999
No 39
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.10 E-value=6.9e-12 Score=121.22 Aligned_cols=107 Identities=24% Similarity=0.355 Sum_probs=78.9
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~ 95 (752)
.++..+|+++|..++|||||+++|+...- .. ....++|.......+.+.
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~~--------------- 53 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKV--TE--------------QEAGGITQHIGAYQVTVN--------------- 53 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCS--SC--------------SSCCSSSTTCCCCEEEET---------------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcc--cc--------------CCCCceeEeeeEEEEEeC---------------
Confidence 35678999999999999999999963221 11 001134444444445553
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
+..++|+||||+.+|.....+.++.+|++++|+|+..+.. ..+...++|.++++||+|
T Consensus 54 -~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 118 (178)
T 2lkc_A 54 -DKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMD 118 (178)
T ss_dssp -TEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTT
T ss_pred -CceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECcc
Confidence 6789999999999998777778889999999999987532 333456899999999999
No 40
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.09 E-value=3.6e-11 Score=124.30 Aligned_cols=104 Identities=20% Similarity=0.264 Sum_probs=75.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
+++|+++|+.++|||||+++|.... .. .| ++ .|+|+......+.+. ++
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~---~~--v~-----~~------pg~Tv~~~~~~~~~~----------------~~ 48 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNAN---QR--VG-----NW------PGVTVEKKTGEFLLG----------------EH 48 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTS---EE--EE-----EC------TTSSSEEEEEEEEET----------------TE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC---CC--cc-----CC------CCceEEEEEEEEEEC----------------Ce
Confidence 3689999999999999999995321 00 11 11 266776666666664 67
Q ss_pred EEEEEcCCCCcccHHH---------HHH-HH--HhhcceEEEEecchhHH-----HHHHHhCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSE---------VTA-AL--RITDGALVVVDCIEGVC-----MYASKFGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e---------~~~-~l--~~~D~avlvvda~~Gv~-----~~~~~~~~p~~~~inkld 154 (752)
.++|+||||+.+|... +.+ .+ +.+|++|+|+|+..--. .++.++++|.++++||+|
T Consensus 49 ~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~D 121 (256)
T 3iby_A 49 LIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMD 121 (256)
T ss_dssp EEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHH
T ss_pred EEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChh
Confidence 9999999999988642 222 22 67999999999998433 555667999999999999
No 41
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.08 E-value=1.3e-11 Score=137.73 Aligned_cols=106 Identities=20% Similarity=0.298 Sum_probs=75.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
...+|+++|++|+|||||+++|+.....+. +...|+|.+.....+.+. +
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~---------------~~~~gtT~d~~~~~~~~~----------------~ 222 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIV---------------SNVAGTTRDAVDTSFTYN----------------Q 222 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEE---------------C---------CCEEEEET----------------T
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceee---------------cCCCCceeeeeEEEEEEC----------------C
Confidence 568999999999999999999964322111 113467877776667664 6
Q ss_pred eEEEEEcCCCCcccHH-----------HHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDFSS-----------EVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df~~-----------e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
..++|+|||||.++.. ....+++.+|++|+|+|+.+|.. .++...++|.++++||+|
T Consensus 223 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~D 297 (436)
T 2hjg_A 223 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWD 297 (436)
T ss_dssp EEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGG
T ss_pred eEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECcc
Confidence 7899999999854332 23467889999999999999864 445667999999999999
No 42
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.08 E-value=4.1e-11 Score=113.55 Aligned_cols=105 Identities=17% Similarity=0.190 Sum_probs=73.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
+++|+++|+.++|||||+++|+....... +...+.|.......+.+. +.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~---------------~~~~~~~~~~~~~~~~~~----------------~~ 49 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVV---------------ADVPGVTRDLKEGVVETD----------------RG 49 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC--------------------------CCEEEEEEET----------------TE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeec---------------cCCCCceecceEEEEEeC----------------Cc
Confidence 47899999999999999999974331110 112234444444444443 56
Q ss_pred EEEEEcCCCCcc-------cHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~d-------f~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
.++++||||+.+ +.......++.+|++++|+|+..+.. .++...++|.+++.||+|
T Consensus 50 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 119 (161)
T 2dyk_A 50 RFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVD 119 (161)
T ss_dssp EEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred eEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcc
Confidence 899999999987 44556677889999999999987643 555667899999999998
No 43
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.07 E-value=6.7e-11 Score=123.61 Aligned_cols=104 Identities=18% Similarity=0.253 Sum_probs=75.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
..+|+++|+.|+|||||+++|+.... . .| + ..|+|+......+.+. +.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~---~--v~-----~------~~g~t~~~~~~~~~~~----------------~~ 50 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ---R--VG-----N------WAGVTVERKEGQFSTT----------------DH 50 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE---E--EE-----E------CTTSSSEEEEEEEECS----------------SC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc---c--cC-----C------CCCeeEEEEEEEEEeC----------------CC
Confidence 35899999999999999999953321 0 11 1 1256666555555553 57
Q ss_pred EEEEEcCCCCcccHH---------HHHH---HHHhhcceEEEEecchhHH-----HHHHHhCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSS---------EVTA---ALRITDGALVVVDCIEGVC-----MYASKFGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~---------e~~~---~l~~~D~avlvvda~~Gv~-----~~~~~~~~p~~~~inkld 154 (752)
.++|+||||+.+|.. .+.+ ..+.+|++|+|+|+...-. .++.+.++|.++++||+|
T Consensus 51 ~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~D 123 (274)
T 3i8s_A 51 QVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLD 123 (274)
T ss_dssp EEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHH
T ss_pred ceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECcc
Confidence 899999999988762 1222 2368999999999998543 556678999999999999
No 44
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.06 E-value=5.7e-11 Score=122.20 Aligned_cols=107 Identities=12% Similarity=0.094 Sum_probs=75.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
....+|+++|+.|+|||||+++|+.....+... ...|.|.......+.|.
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~--------------~~~~~T~~~~~~~~~~~---------------- 68 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRL--------------GATSVTRACTTGSRRWD---------------- 68 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC-----------------------CCSCEEEEEEET----------------
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccC--------------CCCCccccEEEEEEEEC----------------
Confidence 456789999999999999999997554333220 01245665555555664
Q ss_pred ceEEEEEcCCCC--------cccHHHHHHHH----HhhcceEEEEecchhHH-------HHHHHh------CCCHHHHHH
Q 004467 97 EYLINLIDSPGH--------VDFSSEVTAAL----RITDGALVVVDCIEGVC-------MYASKF------GVDESKMME 151 (752)
Q Consensus 97 ~~~inliDtPGh--------~df~~e~~~~l----~~~D~avlvvda~~Gv~-------~~~~~~------~~p~~~~in 151 (752)
++.++|+||||. .+|..++.+++ +.+|++|+|+|+.. .. .++.+. +.|+++|.|
T Consensus 69 ~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~n 147 (247)
T 3lxw_A 69 KCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTR 147 (247)
T ss_dssp TEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred CcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEc
Confidence 789999999997 67888888887 89999999999874 21 333332 677888889
Q ss_pred Hhh
Q 004467 152 RLW 154 (752)
Q Consensus 152 kld 154 (752)
|+|
T Consensus 148 K~D 150 (247)
T 3lxw_A 148 KED 150 (247)
T ss_dssp GGG
T ss_pred hHh
Confidence 888
No 45
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.06 E-value=2.7e-11 Score=117.11 Aligned_cols=113 Identities=15% Similarity=0.125 Sum_probs=76.5
Q ss_pred hhcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccC
Q 004467 12 IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG 91 (752)
Q Consensus 12 ~~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~ 91 (752)
|.+..+...+|+++|+.++|||||+++|+...- ..+...+++.......+.+.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~----------- 54 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTF----------------SGSYITTIGVDFKIRTVEIN----------- 54 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCSCC-------------------CCTTTBSEEEEEEEEEET-----------
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhcCCC----------------CCccCCCceeEEEEEEEEEC-----------
Confidence 334556788999999999999999999942110 01111233443333334442
Q ss_pred CCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHH---H--hCCCHHHHHHHhh
Q 004467 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYAS---K--FGVDESKMMERLW 154 (752)
Q Consensus 92 ~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~---~--~~~p~~~~inkld 154 (752)
+..+.++++||||+.+|.......++.+|++++|+|+..+.. .+.. + .++|.++++||+|
T Consensus 55 ---~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~D 124 (181)
T 3tw8_B 55 ---GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKND 124 (181)
T ss_dssp ---TEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTT
T ss_pred ---CEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 234789999999999998888888999999999999988654 1211 1 2477788889888
No 46
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.05 E-value=1.4e-10 Score=112.00 Aligned_cols=109 Identities=15% Similarity=0.129 Sum_probs=75.5
Q ss_pred cccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccce-EEEEEeeccchhccccCC
Q 004467 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGE 92 (752)
Q Consensus 14 ~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~-~~~~~~~~~~~~~~~~~~ 92 (752)
..+.+..+|+++|+.++|||||+++|+...-. .. ..+ |+.... ..+.+.
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~-~~~----------------t~~~~~~~~~~~~------------ 53 (181)
T 2fn4_A 4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFV-SD-YDP----------------TIEDSYTKICSVD------------ 53 (181)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCC-SS-CCT----------------TCCEEEEEEEEET------------
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCcCc-cc-cCC----------------CcCceEEEEEEEC------------
Confidence 34467889999999999999999999754211 10 011 111111 112221
Q ss_pred CCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----H----HHH---HhCCCHHHHHHHhh
Q 004467 93 RNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----M----YAS---KFGVDESKMMERLW 154 (752)
Q Consensus 93 ~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~----~~~---~~~~p~~~~inkld 154 (752)
+..+.++|+||||+.+|.......++.+|++++|+|+...-. . +.. ..++|.++++||+|
T Consensus 54 --~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 125 (181)
T 2fn4_A 54 --GIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 125 (181)
T ss_dssp --TEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGG
T ss_pred --CEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 235789999999999998888888999999999999997533 1 112 23788888999998
No 47
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.05 E-value=1e-10 Score=114.87 Aligned_cols=113 Identities=14% Similarity=0.162 Sum_probs=78.6
Q ss_pred hhcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccC
Q 004467 12 IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG 91 (752)
Q Consensus 12 ~~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~ 91 (752)
+....+...+|+++|+.++|||||+++|+...-.... ...++.......+.+.
T Consensus 9 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~----------- 61 (196)
T 3tkl_A 9 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESY----------------ISTIGVDFKIRTIELD----------- 61 (196)
T ss_dssp --CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCC----------------CCCSSEEEEEEEEEET-----------
T ss_pred cCcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCC----------------CCcccceEEEEEEEEC-----------
Confidence 3334456789999999999999999999743211110 1123333333333332
Q ss_pred CCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HH---HHHh---CCCHHHHHHHhh
Q 004467 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MY---ASKF---GVDESKMMERLW 154 (752)
Q Consensus 92 ~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~---~~~~---~~p~~~~inkld 154 (752)
+..+.++|+||||+.+|.......++.+|++|+|+|+..... .+ +..+ ++|.+++.||+|
T Consensus 62 ---~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D 132 (196)
T 3tkl_A 62 ---GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 132 (196)
T ss_dssp ---TEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred ---CEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcc
Confidence 234789999999999999889999999999999999998643 22 2222 678888889988
No 48
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.04 E-value=8.1e-11 Score=113.49 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=75.8
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~ 95 (752)
.++..+|+++|+.++|||||+++|+........ .. ..|.+.... .+.+ ++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~------------t~~~~~~~~--~~~~--------------~~ 61 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADC--PH------------TIGVEFGTR--IIEV--------------SG 61 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSC--TT------------SCCCCEEEE--EEEE--------------TT
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CC------------ccceEEEEE--EEEE--------------CC
Confidence 355789999999999999999999754321110 00 001222111 1222 12
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HH---HHH---hCCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MY---ASK---FGVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~---~~~---~~~p~~~~inkld 154 (752)
..+.++|+||||+.+|.......++.+|++++|+|+..+.. .+ +.. .++|.+++.||+|
T Consensus 62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 131 (179)
T 1z0f_A 62 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 131 (179)
T ss_dssp EEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred eEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcc
Confidence 35789999999999999999999999999999999998754 11 222 4677888889888
No 49
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.03 E-value=9.5e-11 Score=114.08 Aligned_cols=110 Identities=16% Similarity=0.104 Sum_probs=76.1
Q ss_pred ccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCC
Q 004467 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (752)
Q Consensus 15 ~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~ 94 (752)
..++..+|+++|+.++|||||+++|+........ . ..++.......+.+.
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~--------------~~~~~~~~~~~~~~~-------------- 55 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDS--N--------------HTIGVEFGSKIINVG-------------- 55 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTC--C--------------CCSEEEEEEEEEEET--------------
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCC--C--------------CccceEEEEEEEEEC--------------
Confidence 3456789999999999999999999754321110 0 012222222222221
Q ss_pred CCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHH---H---HhCCCHHHHHHHhh
Q 004467 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYA---S---KFGVDESKMMERLW 154 (752)
Q Consensus 95 ~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~---~---~~~~p~~~~inkld 154 (752)
++...++|+||||+.+|.......++.+|++|+|+|+..... .+. . ..++|.+++.||+|
T Consensus 56 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 126 (186)
T 2bme_A 56 GKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 126 (186)
T ss_dssp TEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred CEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcc
Confidence 234689999999999999888888999999999999998654 111 1 24678888889988
No 50
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.03 E-value=1.5e-10 Score=114.52 Aligned_cols=108 Identities=18% Similarity=0.189 Sum_probs=72.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
++..+|+++|+.++|||||+++|+...-. .. . ...-|.+... ..+.+. +.
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~--~-----------~~t~~~~~~~--~~~~~~--------------~~ 75 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFR-EN--I-----------SATLGVDFQM--KTLIVD--------------GE 75 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC------------------------CEE--EEEEET--------------TE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCC-cc--C-----------CCCccceeEE--EEEEEC--------------CE
Confidence 55789999999999999999999643210 00 0 0011222221 122221 23
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----H---HHHH---hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----M---YASK---FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~---~~~~---~~~p~~~~inkld 154 (752)
.+.++|+||||+.+|.......++.+|++|+|+|+..+.. . .+.. .++|.++++||+|
T Consensus 76 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~D 144 (199)
T 2p5s_A 76 RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKAD 144 (199)
T ss_dssp EEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGG
T ss_pred EEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcc
Confidence 5789999999999999999999999999999999987654 1 1222 2688888889988
No 51
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.03 E-value=1.1e-10 Score=120.92 Aligned_cols=106 Identities=18% Similarity=0.260 Sum_probs=77.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+..+|+++|+.|+|||||+++|....- ...+ ..|+|+......+.+.
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~----------~~~~------~pg~tv~~~~~~~~~~---------------- 50 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQ----------YVAN------WPGVTVEKKEGVFTYK---------------- 50 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCE----------EEEE------CTTSCCEEEEEEEEET----------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCC----------cccC------CCCceEEEEEEEEEEC----------------
Confidence 3467899999999999999999952210 1111 1267777666666553
Q ss_pred ceEEEEEcCCCCcccHH-----HHHHHH---HhhcceEEEEecchhHH-----HHHHHhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSS-----EVTAAL---RITDGALVVVDCIEGVC-----MYASKFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~-----e~~~~l---~~~D~avlvvda~~Gv~-----~~~~~~~~p~~~~inkld 154 (752)
++.++|+||||+.+|.. .+.+.. ..+|++++|+|++.... ..+.++++|.++++||+|
T Consensus 51 ~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~D 121 (258)
T 3a1s_A 51 GYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAID 121 (258)
T ss_dssp TEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHH
T ss_pred CeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcC
Confidence 68999999999988753 222322 47999999999987543 455667999999999999
No 52
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.02 E-value=1.7e-10 Score=111.26 Aligned_cols=111 Identities=16% Similarity=0.115 Sum_probs=74.8
Q ss_pred cccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCC
Q 004467 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGER 93 (752)
Q Consensus 14 ~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~ 93 (752)
.++.+..+|+++|+.++|||||+++|+...-.... ...++++.....+.+.
T Consensus 9 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~------------- 59 (179)
T 2y8e_A 9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTY----------------QATIGIDFLSKTMYLE------------- 59 (179)
T ss_dssp ---CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSC----------------CCCCSEEEEEEEEEET-------------
T ss_pred cCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCC----------------CCceeeEEEEEEEEEC-------------
Confidence 33445578999999999999999999743221100 0112222222222232
Q ss_pred CCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHH---H---HhCCCHHHHHHHhh
Q 004467 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYA---S---KFGVDESKMMERLW 154 (752)
Q Consensus 94 ~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~---~---~~~~p~~~~inkld 154 (752)
+..+.+.|+||||+.+|.......++.+|++++|+|+..... .+. . ..++|.++++||+|
T Consensus 60 -~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 130 (179)
T 2y8e_A 60 -DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 130 (179)
T ss_dssp -TEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGG
T ss_pred -CeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCc
Confidence 235789999999999999888889999999999999987533 111 1 13678888889888
No 53
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.01 E-value=1e-10 Score=116.05 Aligned_cols=110 Identities=14% Similarity=0.083 Sum_probs=74.5
Q ss_pred ccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCC
Q 004467 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (752)
Q Consensus 15 ~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~ 94 (752)
......+|+++|+.++|||||+++|+...-.... . ..++.+.....+.+ +
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~--------------~t~~~~~~~~~~~~--------------~ 53 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQY--K--------------ATIGADFLTKEVMV--------------D 53 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSC--C--------------CCCSEEEEEEEEES--------------S
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCC--C--------------CcccceEEEEEEEE--------------C
Confidence 4466789999999999999999999754321100 0 01122211222222 2
Q ss_pred CCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----H----HHHH------hCCCHHHHHHHhh
Q 004467 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----M----YASK------FGVDESKMMERLW 154 (752)
Q Consensus 95 ~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~----~~~~------~~~p~~~~inkld 154 (752)
+..+.++|+||||+.+|.......++.+|++|+|+|+..+.. . +... .++|.++++||+|
T Consensus 54 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 128 (207)
T 1vg8_A 54 DRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128 (207)
T ss_dssp SCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTT
T ss_pred CEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCC
Confidence 235789999999999998777778899999999999987743 1 1111 3788888899998
No 54
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.01 E-value=2.3e-10 Score=112.47 Aligned_cols=108 Identities=15% Similarity=0.175 Sum_probs=74.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
+...+|+++|+.++|||||+++|+...- ..+....++.+.....+.+. +.
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~--------------~~ 73 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTF----------------CEACKSTVGVDFKIKTVELR--------------GK 73 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC------------------------CCTTEEEEEEEEEET--------------TE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC----------------CcCCCCccceeEEEEEEEEC--------------Ce
Confidence 4467899999999999999999942110 00111122222222233332 23
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH--------HHHHH---hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--------MYASK---FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~--------~~~~~---~~~p~~~~inkld 154 (752)
.+.++|+||||+.+|.......++.+|++|+|+|+..+.. ..+.. .++|.+++.||+|
T Consensus 74 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~D 142 (192)
T 2il1_A 74 KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 142 (192)
T ss_dssp EEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcc
Confidence 5789999999999999989999999999999999998754 12222 2678888889988
No 55
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.00 E-value=1.3e-10 Score=112.40 Aligned_cols=108 Identities=15% Similarity=0.078 Sum_probs=74.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
....+|+++|+.++|||||+++|+...-.. +....++.......+.+. +.
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~--------------~~ 59 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVE----------------FQESTIGAAFFSQTLAVN--------------DA 59 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTT----------------TSCCCSCCSEEEEEEEET--------------TE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCC----------------cCCCCceeEEEEEEEEEC--------------CE
Confidence 445789999999999999999997432110 001112222222222232 23
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH--------HHHHHh---CCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--------MYASKF---GVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~--------~~~~~~---~~p~~~~inkld 154 (752)
.+.++|+||||+.+|.......++.+|++|+|+|+..... ..+... ++|.++++||+|
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 128 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSD 128 (181)
T ss_dssp EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCc
Confidence 5789999999999999888889999999999999987644 122222 677888889888
No 56
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.00 E-value=3.8e-10 Score=107.24 Aligned_cols=105 Identities=17% Similarity=0.172 Sum_probs=70.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccc-eEEEEEeeccchhccccCCCCCC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~-~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
+..+|+++|+.++|||||+++|+...- ... ..+ |+... ...+.+ ++.
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~-~~~----------------t~~~~~~~~~~~--------------~~~ 50 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEF-VED-YEP----------------TKADSYRKKVVL--------------DGE 50 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CSC-CCT----------------TCCEEEEEEEEE--------------TTE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcc-CCC-CCC----------------CcceEEEEEEEE--------------CCE
Confidence 357899999999999999999975431 110 001 11110 111222 123
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHH---HhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYAS---KFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~---~~~~p~~~~inkld 154 (752)
.+.++|+||||+.+|.......++.+|++++|+|+...-. .+.. ..++|.++++||+|
T Consensus 51 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 120 (168)
T 1u8z_A 51 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 120 (168)
T ss_dssp EEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGG
T ss_pred EEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcc
Confidence 5789999999999999988899999999999999996533 1111 13788888999998
No 57
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.00 E-value=4e-10 Score=109.36 Aligned_cols=110 Identities=16% Similarity=0.148 Sum_probs=73.6
Q ss_pred hcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccc-eEEEEEeeccchhccccC
Q 004467 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKG 91 (752)
Q Consensus 13 ~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~-~~~~~~~~~~~~~~~~~~ 91 (752)
+....+..+|+++|+.++|||||+++|+...- ... ..+ |+... ...+.+
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~-~~~----------------t~~~~~~~~~~~------------ 61 (187)
T 2a9k_A 12 SQNSLALHKVIMVGSGGVGKSALTLQFMYDEF-VED-YEP----------------TKADSYRKKVVL------------ 61 (187)
T ss_dssp -----CEEEEEEECSTTSSHHHHHHHHHHSCC-CCS-CCT----------------TCCEEEEEEEEE------------
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHhhCCC-CCc-CCC----------------ccceEEEEEEEE------------
Confidence 33445678999999999999999999975331 110 011 11111 111222
Q ss_pred CCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHH---HhCCCHHHHHHHhh
Q 004467 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYAS---KFGVDESKMMERLW 154 (752)
Q Consensus 92 ~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~---~~~~p~~~~inkld 154 (752)
++..+.+.|+||||+.+|.......++.+|++++|+|+...-. .+.. ..++|.++++||+|
T Consensus 62 --~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 134 (187)
T 2a9k_A 62 --DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 134 (187)
T ss_dssp --TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGG
T ss_pred --CCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 1235689999999999999988999999999999999986532 1111 13788888999988
No 58
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.00 E-value=3.4e-10 Score=111.37 Aligned_cols=57 Identities=16% Similarity=0.094 Sum_probs=48.2
Q ss_pred eEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHHHhCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~~~~~p~~~~inkld 154 (752)
+.++|+||||+.+|.......++.+|++|+|+|+..+.. .+....++|.++++||+|
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 789999999999999888999999999999999998744 222334688888899988
No 59
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.99 E-value=1.4e-10 Score=129.43 Aligned_cols=104 Identities=25% Similarity=0.301 Sum_probs=75.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
+.|+|+|++++|||||+++|+.....+. .| .-|+|.+.....+.|. +..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v---------~~------~~g~T~d~~~~~~~~~----------------~~~ 50 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIV---------ED------EEGVTRDPVQDTVEWY----------------GKT 50 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-----------------------------CCSEEEEEET----------------TEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcee---------cC------CCCCccceeeEEEEEC----------------CeE
Confidence 5799999999999999999964332111 11 2367777777777775 678
Q ss_pred EEEEcCCCCcc---------cHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 100 INLIDSPGHVD---------FSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~d---------f~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
++|+||||... +...+..+++.+|++|+|+|+..|.. .++++.++|+++++||+|
T Consensus 51 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D 121 (439)
T 1mky_A 51 FKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAE 121 (439)
T ss_dssp EEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCC
T ss_pred EEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 99999999764 23456778899999999999988754 455667999999999988
No 60
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.99 E-value=1.8e-10 Score=109.93 Aligned_cols=107 Identities=14% Similarity=0.100 Sum_probs=72.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
+..+|+++|+.++|||||+++|+...- .. .. +...|.+... ..+.+ ++..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~--~~----------~~~~~~~~~~--~~~~~--------------~~~~ 54 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQF--HE--FQ----------ESTIGAAFLT--QTVCL--------------DDTT 54 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC--CT--TC----------CCCSSEEEEE--EEEEE--------------TTEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCC--CC--CC----------CCccceEEEE--EEEEE--------------CCEE
Confidence 456899999999999999999974321 10 00 0011222211 11222 1236
Q ss_pred eEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----H---HHHH---hCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----M---YASK---FGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~---~~~~---~~~p~~~~inkld 154 (752)
+.++++||||+.+|.......++.+|++++|+|+..... . .+.. .++|.+++.||+|
T Consensus 55 ~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D 122 (170)
T 1r2q_A 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD 122 (170)
T ss_dssp EEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcc
Confidence 789999999999999888889999999999999987643 1 1122 2566666678888
No 61
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.99 E-value=1.5e-10 Score=120.03 Aligned_cols=107 Identities=20% Similarity=0.185 Sum_probs=69.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+..+|+++|++|+|||||+++|+........ + ..+.|+......+.+.
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~---------~------~~~~t~~~~~~~~~~~---------------- 82 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVS---------P------FQAEGLRPVMVSRTMG---------------- 82 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCC---------S------SCC-CCCCEEEEEEET----------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccC---------C------CCCcceeeEEEEEEEC----------------
Confidence 46789999999999999999999754331111 1 1244666666666664
Q ss_pred ceEEEEEcCCCCcccHHHHHH---HHH------hhcceEEEEecchh-H---H----HHH-HHhC----CCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTA---ALR------ITDGALVVVDCIEG-V---C----MYA-SKFG----VDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~---~l~------~~D~avlvvda~~G-v---~----~~~-~~~~----~p~~~~inkld 154 (752)
+..++|+|||||.+|...... .++ .+|++++|+|.... . . ..+ ..++ .|.++++||+|
T Consensus 83 ~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~D 162 (262)
T 3def_A 83 GFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQ 162 (262)
T ss_dssp TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTT
T ss_pred CeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcc
Confidence 679999999999988543322 232 67999999776531 1 1 122 2223 25667778877
No 62
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.99 E-value=1.8e-10 Score=113.03 Aligned_cols=110 Identities=13% Similarity=0.092 Sum_probs=75.4
Q ss_pred ccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCC
Q 004467 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (752)
Q Consensus 15 ~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~ 94 (752)
+.+...+|+++|+.++|||||+++|+...-.... .. ..|.+.... .+.+ +
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~--~~------------t~~~~~~~~--~~~~--------------~ 70 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDS--RT------------TIGVEFSTR--TVML--------------G 70 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSC--CC------------CSSEEEEEE--EEEE--------------T
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCC--CC------------ccceeEEEE--EEEE--------------C
Confidence 3455789999999999999999999754321110 00 001121111 1111 1
Q ss_pred CCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHHH------hCCCHHHHHHHhh
Q 004467 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYASK------FGVDESKMMERLW 154 (752)
Q Consensus 95 ~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~~------~~~p~~~~inkld 154 (752)
+..+.++|+||||+.+|.......++.+|++|+|+|+..... .+... .++|.++++||+|
T Consensus 71 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~D 141 (193)
T 2oil_A 71 TAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSD 141 (193)
T ss_dssp TEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGG
T ss_pred CEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCC
Confidence 236789999999999998888889999999999999987644 22221 2677888889888
No 63
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.99 E-value=2.2e-10 Score=109.26 Aligned_cols=106 Identities=14% Similarity=0.116 Sum_probs=72.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
..+|+++|+.++|||||+++|+...-.-.. . ..++.......+.+. +..+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~--------------~~~~~~~~~~~~~~~--------------~~~~ 52 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENK--E--------------PTIGAAFLTQRVTIN--------------EHTV 52 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTC--C--------------CCSSEEEEEEEEEET--------------TEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCC--C--------------CccceeEEEEEEEEC--------------CEEE
Confidence 357999999999999999999754311000 0 011111111122221 2357
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHH----HH--hCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYA----SK--FGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~----~~--~~~p~~~~inkld 154 (752)
.+.++||||+.+|.......++.+|++++|+|+..... .+. .. .++|.+++.||+|
T Consensus 53 ~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 119 (170)
T 1ek0_A 53 KFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKID 119 (170)
T ss_dssp EEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCC
Confidence 89999999999999888899999999999999998643 111 11 2677788889988
No 64
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.99 E-value=1.2e-10 Score=112.47 Aligned_cols=111 Identities=15% Similarity=0.104 Sum_probs=65.4
Q ss_pred ccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCC
Q 004467 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (752)
Q Consensus 15 ~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~ 94 (752)
..++..+|+++|+.++|||||+++|+...-... ....++.......+.+. .
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~-------------~ 54 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQ----------------YKATIGADFLTKEVTVD-------------G 54 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTT----------------C---CCCSCEEEEECCS-------------S
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcc----------------cCCccceEEEEEEEEEc-------------C
Confidence 345678999999999999999999975321100 00111222212222221 1
Q ss_pred CCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HH----HHH------hCCCHHHHHHHhh
Q 004467 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MY----ASK------FGVDESKMMERLW 154 (752)
Q Consensus 95 ~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~----~~~------~~~p~~~~inkld 154 (752)
+....++|+||||+.+|.......++.+|++|+|+|+..... .+ ... .++|.++++||+|
T Consensus 55 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 129 (182)
T 1ky3_A 55 DKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 129 (182)
T ss_dssp SCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTT
T ss_pred CcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCc
Confidence 235789999999999998888888899999999999987653 11 111 5688888899988
No 65
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.98 E-value=5.3e-10 Score=106.14 Aligned_cols=104 Identities=16% Similarity=0.138 Sum_probs=72.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccc-eEEEEEeeccchhccccCCCCCCc
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~-~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
..+|+++|+.++|||||+++|+...-.... .. |+... ...+.+ ++..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~----------------~~~~~~~~~~~~--------------~~~~ 50 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKY--DP----------------TIEDFYRKEIEV--------------DSSP 50 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCC--CT----------------TCCEEEEEEEEE--------------TTEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccC--CC----------------CcceeEEEEEEE--------------CCEE
Confidence 458999999999999999999753211000 00 11100 111122 1235
Q ss_pred eEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHH---HhCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYAS---KFGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~---~~~~p~~~~inkld 154 (752)
+.++|+||||+.+|.......++.+|++++|+|+..... .+.. ..++|.++++||+|
T Consensus 51 ~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 119 (167)
T 1kao_A 51 SVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119 (167)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGG
T ss_pred EEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCc
Confidence 679999999999999888889999999999999987543 1112 23788888999998
No 66
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.98 E-value=1.8e-10 Score=112.78 Aligned_cols=104 Identities=13% Similarity=0.064 Sum_probs=74.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
++..+|+++|+.++|||||+++|+...-. .. . .-|+......+.+ +
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~--~---------------~~t~~~~~~~~~~----------------~ 65 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFN-ED--M---------------IPTVGFNMRKITK----------------G 65 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCC-CS--C---------------CCCCSEEEEEEEE----------------T
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCC-Cc--c---------------CCCCceeEEEEEe----------------C
Confidence 34678999999999999999999743211 00 0 1122222222333 3
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchh--HH-------HHHH---HhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG--VC-------MYAS---KFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~G--v~-------~~~~---~~~~p~~~~inkld 154 (752)
.+.++|+||||+.+|.......++.+|++|+|+|+... .. .+.. ..++|.++++||+|
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D 135 (188)
T 1zd9_A 66 NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRD 135 (188)
T ss_dssp TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCC
Confidence 78999999999999988888889999999999999754 32 1222 15788888999998
No 67
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.98 E-value=4.2e-11 Score=120.54 Aligned_cols=109 Identities=16% Similarity=0.124 Sum_probs=71.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+..+|+++|+.++|||||+++|+...... .+.+ ..|.|.......+.+ .+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~--------~~~~------~~~~t~~~~~~~~~~---------------~~ 77 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLA--------FASK------TPGRTQHINYFSVGP---------------AA 77 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSS--------CTTC------CCCSCCCEEEEEESC---------------TT
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcce--------eecC------CCCcccceEEEEecC---------------CC
Confidence 456789999999999999999996432100 0000 113344332222211 23
Q ss_pred ceEEEEEcCCCCcc-------------cHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVD-------------FSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~d-------------f~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
+..++|+||||+.+ +.....+....+|++++|+|+.++.. .++...++|.++++||+|
T Consensus 78 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~D 155 (223)
T 4dhe_A 78 EPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCD 155 (223)
T ss_dssp SCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGG
T ss_pred CCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccc
Confidence 57899999999743 23344444455888999999997643 445567899999999998
No 68
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.98 E-value=2e-10 Score=110.67 Aligned_cols=109 Identities=16% Similarity=0.114 Sum_probs=74.8
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~ 95 (752)
.....+|+++|+.++|||||+++|+...-.. +....++.......+.+. +
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~--------------~ 53 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDT----------------QLFHTIGVEFLNKDLEVD--------------G 53 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC--------------------CCSEEEEEEEEEET--------------T
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCC----------------CCCCceeeeEEEEEEEEC--------------C
Confidence 3456799999999999999999997432100 011112222222222232 2
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHH---HH-------hCCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYA---SK-------FGVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~---~~-------~~~p~~~~inkld 154 (752)
....+.|+||||+.+|.......++.+|++++|+|+..+.. .+. .. .++|.++++||+|
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 127 (177)
T 1wms_A 54 HFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 127 (177)
T ss_dssp EEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTT
T ss_pred EEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCc
Confidence 34789999999999998888888899999999999998753 111 11 5678888889988
No 69
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.98 E-value=3.6e-10 Score=109.73 Aligned_cols=107 Identities=16% Similarity=0.168 Sum_probs=74.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
....+|+++|+.++|||||+++|+...- .... . -|+.......... ++.
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~-~~~~-~----------------~t~~~~~~~~~~~-------------~~~ 64 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIF-VDDY-D----------------PTIEDSYLKHTEI-------------DNQ 64 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCC-CSCC-C----------------TTCCEEEEEEEEE-------------TTE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC-CCCC-C----------------CCccceeEEEEEe-------------CCc
Confidence 4567999999999999999999974321 1100 0 0111111111111 223
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH------------HHHHHhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC------------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~------------~~~~~~~~p~~~~inkld 154 (752)
.+.++++||||+.+|.......++.+|++++|+|+..... .+....++|.+++.||+|
T Consensus 65 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 134 (183)
T 3kkq_A 65 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVD 134 (183)
T ss_dssp EEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTT
T ss_pred EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCC
Confidence 5678889999999999888889999999999999998733 112235788888899988
No 70
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.97 E-value=7.5e-10 Score=105.75 Aligned_cols=105 Identities=11% Similarity=0.066 Sum_probs=71.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
..+|+++|+.++|||||+++|+... .... +. .|+.......... +...+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~--~~~~------~~----------~t~~~~~~~~~~~-------------~~~~~ 51 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGT--FRES------YI----------PTVEDTYRQVISC-------------DKSIC 51 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCC--CCSS------CC----------CCSCEEEEEEEEE-------------TTEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC--CCCC------CC----------CCccccEEEEEEE-------------CCEEE
Confidence 4579999999999999999996321 1100 00 0111111111111 12357
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH--------HHHHH-----hCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--------MYASK-----FGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~--------~~~~~-----~~~p~~~~inkld 154 (752)
.++++||||+.+|.......++.+|++++|+|+..... ....+ .++|.++++||+|
T Consensus 52 ~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~D 120 (172)
T 2erx_A 52 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCD 120 (172)
T ss_dssp EEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGG
T ss_pred EEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccc
Confidence 89999999999999888889999999999999987543 11222 2688888899988
No 71
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.97 E-value=2.1e-10 Score=114.06 Aligned_cols=113 Identities=13% Similarity=0.128 Sum_probs=75.8
Q ss_pred hhcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccC
Q 004467 12 IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG 91 (752)
Q Consensus 12 ~~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~ 91 (752)
.|...+...+|+++|+.++|||||+++|+...- ... .+ ..++++.....+.+.
T Consensus 19 ~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~--~~~-~~-------------~t~~~~~~~~~~~~~----------- 71 (201)
T 2ew1_A 19 SMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLF--PPG-QG-------------ATIGVDFMIKTVEIN----------- 71 (201)
T ss_dssp ---CCSEEEEEEEEESTTSSHHHHHHHHHHSSC--CTT-CC-------------CCCSEEEEEEEEEET-----------
T ss_pred CccccccceEEEEECcCCCCHHHHHHHHHhCCC--CCC-CC-------------CccceeEEEEEEEEC-----------
Confidence 444556678999999999999999999974321 110 01 011222222222332
Q ss_pred CCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HH---HHH---hCCCHHHHHHHhh
Q 004467 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MY---ASK---FGVDESKMMERLW 154 (752)
Q Consensus 92 ~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~---~~~---~~~p~~~~inkld 154 (752)
+..+.++|+||||+.+|.......++.+|++|+|+|++.... .+ +.. .++|.+++.||+|
T Consensus 72 ---~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~D 142 (201)
T 2ew1_A 72 ---GEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID 142 (201)
T ss_dssp ---TEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred ---CEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC
Confidence 235789999999999998888888899999999999987643 12 122 3577788889988
No 72
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.97 E-value=1.8e-10 Score=113.44 Aligned_cols=106 Identities=12% Similarity=0.055 Sum_probs=74.1
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~ 95 (752)
.....+|+++|+.++|||||+++|+...-.. .++ .-|+......+.+
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~----------~~~-------~~t~~~~~~~~~~---------------- 60 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSS----------KHI-------TATVGYNVETFEK---------------- 60 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC--------------CC-------CCCSSEEEEEEEE----------------
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcc----------ccc-------ccccceeEEEEEe----------------
Confidence 4567899999999999999999994221100 011 1133222222333
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHHH--------------hCCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYASK--------------FGVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~~--------------~~~p~~~~inkld 154 (752)
..+.++|+||||+.+|.......++.+|++|+|+|+..+.. .+... .++|+++++||+|
T Consensus 61 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~D 138 (199)
T 4bas_A 61 GRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMD 138 (199)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTT
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcC
Confidence 37899999999999998888888899999999999998732 11111 1789999999998
No 73
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.97 E-value=3.7e-10 Score=107.58 Aligned_cols=108 Identities=13% Similarity=0.177 Sum_probs=73.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
+...+|+++|+.++|||||+++|+... .... ... .++.+.....+.+. +.
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~-~~~-------------t~~~~~~~~~~~~~--------------~~ 52 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGI--FTKD-YKK-------------TIGVDFLERQIQVN--------------DE 52 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCC--CCCC-SSC-------------CCSSSEEEEEEEET--------------TE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCC--CCCC-CCC-------------ceEEEEEEEEEEEC--------------CE
Confidence 456789999999999999999997432 1110 000 01111111222221 23
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHHH-----hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYASK-----FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~~-----~~~p~~~~inkld 154 (752)
.+.+.++||||+.+|.......++.+|++++|+|+..... .+... .++|.++++||+|
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~D 120 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKID 120 (168)
T ss_dssp EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGG
T ss_pred EEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 5789999999999998888888999999999999987643 22221 3788888899988
No 74
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.96 E-value=2.2e-10 Score=110.75 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=68.3
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~ 95 (752)
.+...+|+++|+.++|||||+++|+...-.... .. ..+++......+.+ ++
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~-------------~t~~~~~~~~~~~~--------------~~ 57 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGT--FI-------------STVGIDFRNKVLDV--------------DG 57 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCC--CC-------------CCCSCEEEEEEEEE--------------TT
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCC--cC-------------CceeeEEEEEEEEE--------------CC
Confidence 355679999999999999999999754321111 00 01122111111222 12
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----H---HHHH---hCCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----M---YASK---FGVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~---~~~~---~~~p~~~~inkld 154 (752)
..+.++++||||+.+|.......++.+|++++|+|+..+.. . .+.. .++|.+++.||+|
T Consensus 58 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 127 (180)
T 2g6b_A 58 VKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 127 (180)
T ss_dssp EEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCS
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcc
Confidence 35689999999999998888888999999999999998643 1 1222 4678888889988
No 75
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.96 E-value=1.5e-10 Score=113.26 Aligned_cols=108 Identities=15% Similarity=0.162 Sum_probs=74.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
+...+|+++|+.++|||||+++|+...-.... .. ..|++.... .+.+ ++.
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~------------t~~~~~~~~--~~~~--------------~~~ 69 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAF--VS------------TVGIDFKVK--TVYR--------------HDK 69 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSC--CC------------CCCCEEEEE--EEEE--------------TTE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCc--CC------------ceeEEEEEE--EEEE--------------CCe
Confidence 44679999999999999999999753311000 00 012222211 1222 123
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH--------HHHHHh---CCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--------MYASKF---GVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~--------~~~~~~---~~p~~~~inkld 154 (752)
.+.++|+||||+.+|.......++.+|++|+|+|+..... ..+..+ ++|.++++||+|
T Consensus 70 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 138 (189)
T 2gf9_A 70 RIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCD 138 (189)
T ss_dssp EEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcc
Confidence 6789999999999998888888899999999999987643 222332 688888889988
No 76
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.96 E-value=1.8e-10 Score=109.98 Aligned_cols=107 Identities=19% Similarity=0.144 Sum_probs=72.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
...+|+++|+.++|||||+++|+...- .. +....++.......+.+ ++..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~--------------~~~~ 51 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKF--NP--------------SFITTIGIDFKIKTVDI--------------NGKK 51 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCC--CC---------------------CCEEEEEEES--------------SSCE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCC--CC--------------CCCCccceeEEEEEEEE--------------CCEE
Confidence 457899999999999999999974321 00 00111222222222222 2235
Q ss_pred eEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HH---HHH---hCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MY---ASK---FGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~---~~~---~~~p~~~~inkld 154 (752)
+.+.|+||||+.+|.......++.+|++++|+|+..... .+ +.. .++|.++++||+|
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 119 (170)
T 1g16_A 52 VKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 119 (170)
T ss_dssp EEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcc
Confidence 789999999999998888889999999999999987643 11 222 2678888889988
No 77
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.95 E-value=5.5e-10 Score=106.13 Aligned_cols=99 Identities=16% Similarity=0.064 Sum_probs=71.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
+|+++|+.++|||||+++|+...- .+.. -|+......+.+ +++.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~------------~~~~-------~t~~~~~~~~~~----------------~~~~~ 46 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI------------VTTI-------PTIGFNVETVEY----------------KNISF 46 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS------------SCCC-------CCSSCCEEEEEC----------------SSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc------------Cccc-------CcCceeEEEEEE----------------CCEEE
Confidence 689999999999999999975431 1110 122222222333 36899
Q ss_pred EEEcCCCCcccHHHHHHHHHhhcceEEEEecchh--HH---HHHHH-------hCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG--VC---MYASK-------FGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~~l~~~D~avlvvda~~G--v~---~~~~~-------~~~p~~~~inkld 154 (752)
+++||||+.+|.......++.+|++++|+|+... .. .+... .++|.+++.||+|
T Consensus 47 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 112 (164)
T 1r8s_A 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 112 (164)
T ss_dssp EEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred EEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcC
Confidence 9999999999988888889999999999999876 22 22211 2788888889998
No 78
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.95 E-value=2.7e-10 Score=111.95 Aligned_cols=108 Identities=12% Similarity=0.088 Sum_probs=74.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
++..+|+++|+.++|||||+++|+...-. .. +.. .-|.+..... +.+ ++.
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~-------~~~------~~~~~~~~~~--~~~--------------~~~ 70 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFD-HN-------ISP------TIGASFMTKT--VPC--------------GNE 70 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCC-TT-------CCC------CSSEEEEEEE--EEC--------------SSS
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCC-CC-------cCC------CcceeEEEEE--EEe--------------CCE
Confidence 45679999999999999999999753310 00 000 0022221111 111 224
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HH---HHHh---CCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MY---ASKF---GVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~---~~~~---~~p~~~~inkld 154 (752)
.+.++|+||||+.+|.......++.+|++|+|+|+..... .+ +... ++|.++++||+|
T Consensus 71 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~D 139 (192)
T 2fg5_A 71 LHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCD 139 (192)
T ss_dssp EEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcc
Confidence 6799999999999999888999999999999999987643 12 2222 678888889988
No 79
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.94 E-value=7.8e-10 Score=107.94 Aligned_cols=118 Identities=14% Similarity=0.028 Sum_probs=75.4
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceE-EEEEeeccchhccccCCCC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGI-SLYYEMTDDALKSYKGERN 94 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~-~~~~~~~~~~~~~~~~~~~ 94 (752)
.+...+|+++|+.++|||||+++|+...- ... . .-|+..... ...+...+.. ......
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~-~---------------~~t~~~~~~~~~~~~~~~~~---~~~~~~ 66 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKF--NSK-F---------------ITTVGIDFREKRVVYRANGP---DGAVGR 66 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCC--CCS-C---------------CCCCSEEEEEEEEEECTTSC---CCSSCC
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCC--CcC-c---------------ccccceeeeeEEEEEecCCc---cccccc
Confidence 35578999999999999999999974321 100 0 011111111 0111100000 000011
Q ss_pred CCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHH---HH----hCCCHHHHHHHhh
Q 004467 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYA---SK----FGVDESKMMERLW 154 (752)
Q Consensus 95 ~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~---~~----~~~p~~~~inkld 154 (752)
+..+.++|+||||+.+|.......++.+|++|+|+|+..... .+. .. .++|.++++||+|
T Consensus 67 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 138 (195)
T 3bc1_A 67 GQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSD 138 (195)
T ss_dssp CEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTT
T ss_pred CcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 125789999999999999988899999999999999987654 111 11 4788888899988
No 80
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.94 E-value=2e-10 Score=109.95 Aligned_cols=103 Identities=15% Similarity=0.055 Sum_probs=74.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+..+|+++|+.++|||||+++|+...- .. . ..|+......+.+.
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~~----------~-------~~t~~~~~~~~~~~---------------- 49 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEV--VT----------T-------IPTIGFNVETVTYK---------------- 49 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSC--CC----------C-------CCCSSEEEEEEEET----------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCC--CC----------c-------CCcCccceEEEEEC----------------
Confidence 3457899999999999999999964221 10 0 11332223334443
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchh--HH-------HHHHH---hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG--VC-------MYASK---FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~G--v~-------~~~~~---~~~p~~~~inkld 154 (752)
.+.++++||||+.+|.......++.+|++++|+|+... .. .+... .++|.++++||+|
T Consensus 50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 119 (171)
T 1upt_A 50 NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQD 119 (171)
T ss_dssp TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCC
Confidence 68999999999999988777888899999999999875 32 12221 4788888899998
No 81
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.94 E-value=2.4e-10 Score=111.86 Aligned_cols=108 Identities=19% Similarity=0.154 Sum_probs=72.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+..+|+++|+.++|||||+++|+...-.... ...++.+.....+.+. +.
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~--------------~~ 67 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRT----------------EATIGVDFRERAVDID--------------GE 67 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSC----------------CCCCSCCEEEEEEEET--------------TE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCC----------------CCCcceEEEEEEEEEC--------------CE
Confidence 45789999999999999999999753211000 0011221112222222 23
Q ss_pred ceEEEEEcCCCCcccH-HHHHHHHHhhcceEEEEecchhHH-----H----HHH---HhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFS-SEVTAALRITDGALVVVDCIEGVC-----M----YAS---KFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~-~e~~~~l~~~D~avlvvda~~Gv~-----~----~~~---~~~~p~~~~inkld 154 (752)
.+.++|+||||+.+|. ......++.+|++|+|+|+..... . +.. ..++|.++++||+|
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 138 (189)
T 1z06_A 68 RIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 138 (189)
T ss_dssp EEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTT
T ss_pred EEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 5789999999999987 556777899999999999987533 1 112 24688888889988
No 82
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.94 E-value=2e-10 Score=128.87 Aligned_cols=107 Identities=21% Similarity=0.318 Sum_probs=78.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
....+|+++|+.++|||||+++|+.....+.. ...|+|.+.....+.+.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~---------------~~~gtt~~~~~~~~~~~---------------- 241 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVS---------------NVAGTTRDAVDTSFTYN---------------- 241 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------------C------CTTSEEEEET----------------
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccC---------------CCCCeEEEEEEEEEEEC----------------
Confidence 35689999999999999999999743322211 12256777766667664
Q ss_pred ceEEEEEcCCC----------CcccHHH-HHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPG----------HVDFSSE-VTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPG----------h~df~~e-~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
+..++|+|||| +..|... ...+++.+|++|+|+|+.+|+. .++.+.++|.++++||+|
T Consensus 242 ~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~D 317 (456)
T 4dcu_A 242 QQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWD 317 (456)
T ss_dssp TEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGG
T ss_pred CceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChh
Confidence 67999999999 4555543 4457889999999999999865 556678999999999999
No 83
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.94 E-value=1.2e-10 Score=113.05 Aligned_cols=108 Identities=16% Similarity=0.148 Sum_probs=54.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
+...+|+++|+.++|||||+++|+...- . .+-...++.+.....+.+. +.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~------------~----~~~~~t~~~~~~~~~~~~~--------------~~ 55 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAF------------N----STFISTIGIDFKIRTIELD--------------GK 55 (183)
T ss_dssp SEEEEEEEECCCCC--------------------------------CHHHHHCEEEEEEEEEET--------------TE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC------------C----CCCCCcccceeEEEEEEEC--------------CE
Confidence 4578999999999999999999953211 0 0111223333222233332 23
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HH---HHH---hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MY---ASK---FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~---~~~---~~~p~~~~inkld 154 (752)
.+.++|+||||+.+|.......++.+|++|+|+|+..... .+ +.. .++|.+++.||+|
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 124 (183)
T 2fu5_C 56 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124 (183)
T ss_dssp EEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--
T ss_pred EEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcc
Confidence 5789999999999998777777889999999999987643 11 222 2678888889988
No 84
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.93 E-value=3.5e-10 Score=111.96 Aligned_cols=108 Identities=15% Similarity=0.127 Sum_probs=74.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
+...+|+++|+.++|||||+++|+...-.... .. ..|++.... .+.+ ++.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~------------t~~~~~~~~--~~~~--------------~~~ 55 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAF--VS------------TVGIDFKVK--TIYR--------------NDK 55 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCC--CC------------CCSEEEEEE--EEEE--------------TTE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCc--CC------------ccceeEEEE--EEEE--------------CCe
Confidence 45679999999999999999999632210000 00 002222111 1222 123
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----H---HHHH---hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----M---YASK---FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~---~~~~---~~~p~~~~inkld 154 (752)
.+.++|+||||+.+|.......++.+|++|+|+|+..+.. . .+.. .++|.++++||+|
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 124 (203)
T 1zbd_A 56 RIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 124 (203)
T ss_dssp EEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTT
T ss_pred EEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcc
Confidence 5789999999999999888888999999999999987643 1 1222 3688888889988
No 85
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.93 E-value=1.1e-09 Score=103.63 Aligned_cols=103 Identities=19% Similarity=0.223 Sum_probs=71.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccc-eEEEEEeeccchhccccCCCCCCce
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~-~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
.+|+++|+.++|||||+++|+...- .....+ |+... ...+.+ ++..+
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~----------------~~~~~~~~~~~~--------------~~~~~ 51 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHF--VDECDP----------------TIEDSYRKQVVI--------------DGETC 51 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC--CSCCCT----------------TCCEEEEEEEEE--------------TTEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC--ccccCC----------------ccceEEEEEEEE--------------CCEEE
Confidence 4799999999999999999974321 110001 11111 111112 12357
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH--------HHHHH----hCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--------MYASK----FGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~--------~~~~~----~~~p~~~~inkld 154 (752)
.++++||||+.+|.......++.+|++++|+|+..... ..+.. .++|.++++||+|
T Consensus 52 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~D 119 (166)
T 2ce2_X 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD 119 (166)
T ss_dssp EEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTT
T ss_pred EEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchh
Confidence 89999999999999888889999999999999986543 11111 2788888999988
No 86
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.93 E-value=4.2e-10 Score=112.09 Aligned_cols=108 Identities=19% Similarity=0.136 Sum_probs=73.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
....+|+++|+.++|||||+++|+...-. .. . ...++.......+.+. +.
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~--~-------------~~~~~~~~~~~~~~~~--------------~~ 67 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFN-PS--F-------------ITTIGIDFKIKTVDIN--------------GK 67 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCC-CS--S-------------SCCCSCCEEEEEEEET--------------TE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCC-cc--c-------------CCcccceEEEEEEEEC--------------CE
Confidence 44679999999999999999999743211 00 0 0112222222233332 22
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HH---HHH---hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MY---ASK---FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~---~~~---~~~p~~~~inkld 154 (752)
.+.+.|+||||+.+|.......++.+|++|+|+|+..+.. .+ +.. .++|.++++||+|
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 136 (213)
T 3cph_A 68 KVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 136 (213)
T ss_dssp EEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC
Confidence 4789999999999998888888999999999999987643 11 222 2678888889988
No 87
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.93 E-value=9.5e-10 Score=108.79 Aligned_cols=106 Identities=17% Similarity=0.166 Sum_probs=74.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccc-eEEEEEeeccchhccccCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~-~~~~~~~~~~~~~~~~~~~~~~ 95 (752)
.+..+|+++|+.++|||||+++|+...- ... ..+ |+... ...+.+. +
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~-~~~----------------t~~~~~~~~~~~~--------------~ 59 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEF-VED-YEP----------------TKADSYRKKVVLD--------------G 59 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCC-CTT-CCT----------------TCCEEEEEEEEET--------------T
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCC-CCC-CCC----------------ccceEEEEEEEEC--------------C
Confidence 4578999999999999999999975431 110 011 11111 1112221 2
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHH---HhCCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYAS---KFGVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~---~~~~p~~~~inkld 154 (752)
..+.++|+||||+.+|.......++.+|++++|+|+..... .+.. ..++|.++++||+|
T Consensus 60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 130 (206)
T 2bov_A 60 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 130 (206)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTT
T ss_pred EEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccC
Confidence 35689999999999999988889999999999999987533 1111 12788888899988
No 88
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.93 E-value=6.6e-10 Score=110.99 Aligned_cols=107 Identities=18% Similarity=0.147 Sum_probs=70.2
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~ 95 (752)
..+..+|+++|+.++|||||+++|+...- .. . ..|+......+.+. ..
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~--~~--~---------------~~~~~~~~~~~~~~-------------~~ 51 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQY--RD--T---------------QTSITDSSAIYKVN-------------NN 51 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCC--CC--B---------------CCCCSCEEEEEECS-------------ST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCc--cc--c---------------cCCcceeeEEEEec-------------CC
Confidence 45567899999999999999999975431 11 0 11222222223332 11
Q ss_pred CceEEEEEcCCCCcccHHH-HHHHHHhhcceEEEEecchhHH------HHHH---------HhCCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHVDFSSE-VTAALRITDGALVVVDCIEGVC------MYAS---------KFGVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e-~~~~l~~~D~avlvvda~~Gv~------~~~~---------~~~~p~~~~inkld 154 (752)
..+.++++|||||.+|... ....++.+|++|+|+|+..-.. .+.. ..++|.+++.||+|
T Consensus 52 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 126 (214)
T 2fh5_B 52 RGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQD 126 (214)
T ss_dssp TCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTT
T ss_pred CccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCC
Confidence 2578999999999999874 4445789999999999987221 1111 23688888889988
No 89
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.93 E-value=1.1e-09 Score=104.81 Aligned_cols=104 Identities=16% Similarity=0.233 Sum_probs=69.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
...|+++|+.|+|||||+++|....- . .+ ..-|+|+......+.+. +.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~---~--~~-----------~~~~~t~~~~~~~~~~~----------------~~ 50 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENV---Y--IG-----------NWPGVTVEKKEGEFEYN----------------GE 50 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSS---S--CC----------------CCCCCEEEEEET----------------TE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCe---e--cc-----------CCCCcceeeeEEEEEEC----------------Cc
Confidence 46899999999999999999952110 0 01 01245555444445553 57
Q ss_pred EEEEEcCCCCcccHH-----HH-HHHH--HhhcceEEEEecchhHH-----HHHHHhCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSS-----EV-TAAL--RITDGALVVVDCIEGVC-----MYASKFGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~-----e~-~~~l--~~~D~avlvvda~~Gv~-----~~~~~~~~p~~~~inkld 154 (752)
.++++||||+.+|.. .+ ...+ ..+|++++|+|+..--. ..+.+.++|.+++.||+|
T Consensus 51 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 119 (165)
T 2wji_A 51 KFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMD 119 (165)
T ss_dssp EEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHH
T ss_pred EEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchH
Confidence 899999999988741 22 2223 37899999999986322 233446899988899998
No 90
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.93 E-value=6.8e-10 Score=105.61 Aligned_cols=105 Identities=15% Similarity=0.136 Sum_probs=72.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
..+|+++|+.++|||||+++|+... ...... -|+.... ...+. .++..+
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~--~~~~~~----------------~t~~~~~-~~~~~------------~~~~~~ 51 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGI--FVEKYD----------------PTIEDSY-RKQVE------------VDCQQC 51 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC--CCCSCC----------------CCSEEEE-EEEEE------------SSSCEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC--CCCCCC----------------CCccceE-EEEEE------------ECCEEE
Confidence 4589999999999999999997521 111000 0111111 01111 123467
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHH---HhCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYAS---KFGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~---~~~~p~~~~inkld 154 (752)
.++++||||+.+|.......++.+|++++|+|+..... .+.. ..++|.+++.||+|
T Consensus 52 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 119 (167)
T 1c1y_A 52 MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119 (167)
T ss_dssp EEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTT
T ss_pred EEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcc
Confidence 89999999999999888888999999999999986532 1111 23788888899988
No 91
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.92 E-value=9.4e-10 Score=106.03 Aligned_cols=109 Identities=12% Similarity=0.047 Sum_probs=74.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+.-+|+++|+.++|||||+++|+...- ..+....++++.....+.+. ++.
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~-------------~~~ 54 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETF----------------GKQYKQTIGLDFFLRRITLP-------------GNL 54 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGT----------------THHHHHTTTSSEEEEEEEET-------------TTE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcC----------------CCCCCCceeEEEEEEEEEeC-------------CCC
Confidence 4567899999999999999999963211 01112222222222333332 112
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH--------HHHHH-----hCCC-HHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--------MYASK-----FGVD-ESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~--------~~~~~-----~~~p-~~~~inkld 154 (752)
.+.++++||||+..|.......++.+|++++|+|+..... ..+.. .+.| .+++.||+|
T Consensus 55 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~D 126 (178)
T 2hxs_A 55 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126 (178)
T ss_dssp EEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGG
T ss_pred EEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccc
Confidence 4799999999999998888889999999999999987644 11122 1566 567779888
No 92
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.92 E-value=9.3e-10 Score=107.26 Aligned_cols=106 Identities=15% Similarity=0.210 Sum_probs=72.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+..+|+++|+.|+|||||+++|....-. .. ...|+|+......+.+.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~----------~~------~~~~~t~~~~~~~~~~~---------------- 52 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVY----------IG------NWPGVTVEKKEGEFEYN---------------- 52 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEE----------EE------ECTTSCCEEEEEEEEET----------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcc----------cc------CCCCeeccceEEEEEeC----------------
Confidence 35678999999999999999999532100 00 11245555544445553
Q ss_pred ceEEEEEcCCCCcccHH-----HHH-HHHH--hhcceEEEEecchhHH-----HHHHHhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSS-----EVT-AALR--ITDGALVVVDCIEGVC-----MYASKFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~-----e~~-~~l~--~~D~avlvvda~~Gv~-----~~~~~~~~p~~~~inkld 154 (752)
++.++++||||+.+|.. .+. ..++ .+|++++|+|+...-. ..+.+.++|.+++.||+|
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~D 123 (188)
T 2wjg_A 53 GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMD 123 (188)
T ss_dssp TEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHH
T ss_pred CcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhh
Confidence 68999999999998841 122 2222 4899999999986322 334456888888889988
No 93
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.92 E-value=1.4e-09 Score=107.01 Aligned_cols=108 Identities=13% Similarity=0.080 Sum_probs=73.2
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~ 95 (752)
.....+|+++|+.++|||||+++|+...- .. . +. -|+....... +. .++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~--~----~~----------~t~~~~~~~~-~~------------~~~ 53 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTF--RD--T----YI----------PTIEDTYRQV-IS------------CDK 53 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCC--CC--T----TS----------CCCCEEEEEE-EE------------ETT
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCC--CC--c----cc----------CccccceeEE-EE------------ECC
Confidence 34567899999999999999999975321 10 0 00 0111111111 11 012
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH--------HHHHH-----hCCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--------MYASK-----FGVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~--------~~~~~-----~~~p~~~~inkld 154 (752)
..+.++|+||||+.+|.......++.+|++|+|+|+..... ..+.. .++|.++++||+|
T Consensus 54 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~D 125 (199)
T 2gf0_A 54 SVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD 125 (199)
T ss_dssp EEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTT
T ss_pred EEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 35789999999999999888889999999999999986533 11222 3678888889988
No 94
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.91 E-value=9.4e-10 Score=109.06 Aligned_cols=108 Identities=14% Similarity=0.218 Sum_probs=73.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
+...+|+++|+.++|||||+++|+... ... +....++.......+.+. +.
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~--~~~--------------~~~~t~~~~~~~~~~~~~--------------~~ 76 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGA--FSE--------------RQGSTIGVDFTMKTLEIQ--------------GK 76 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSC--C------------------------CEEEEEEEET--------------TE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCC--CCC--------------CCCCCcceEEEEEEEEEC--------------CE
Confidence 456799999999999999999996432 100 000111111112222332 23
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HH---HHH---hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MY---ASK---FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~---~~~---~~~p~~~~inkld 154 (752)
.+.++|+||||+.+|.......++.+|++|+|+|++.... .+ +.. .++|.+++.||+|
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~D 145 (201)
T 2hup_A 77 RVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSD 145 (201)
T ss_dssp EEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCc
Confidence 4799999999999999888899999999999999987643 12 222 3577888889888
No 95
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.91 E-value=6.7e-10 Score=108.11 Aligned_cols=111 Identities=15% Similarity=0.093 Sum_probs=77.2
Q ss_pred HHHhhcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhcc
Q 004467 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKS 88 (752)
Q Consensus 9 ~~~~~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~ 88 (752)
++.+...+....+|+++|+.++|||||+++|.... +.+. .-|+......+.+.
T Consensus 6 ~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~------------~~~~-------~~t~g~~~~~~~~~-------- 58 (181)
T 1fzq_A 6 LRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASED------------ISHI-------TPTQGFNIKSVQSQ-------- 58 (181)
T ss_dssp HHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSC------------CEEE-------EEETTEEEEEEEET--------
T ss_pred HHHHhccCCCceEEEEECCCCCCHHHHHHHHhcCC------------CCcc-------cCcCCeEEEEEEEC--------
Confidence 34444445677899999999999999999994210 0000 01222112223332
Q ss_pred ccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHH-------HhCCCHHHHHHHhh
Q 004467 89 YKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYAS-------KFGVDESKMMERLW 154 (752)
Q Consensus 89 ~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~-------~~~~p~~~~inkld 154 (752)
++.++++||||+..|.......++.+|++++|+|++..-. .+.. ..++|.+++.||+|
T Consensus 59 --------~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D 128 (181)
T 1fzq_A 59 --------GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQD 128 (181)
T ss_dssp --------TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTT
T ss_pred --------CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcC
Confidence 6899999999999998888888999999999999986522 2222 14688888899998
No 96
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.91 E-value=2.5e-10 Score=113.33 Aligned_cols=109 Identities=15% Similarity=0.142 Sum_probs=75.2
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~ 95 (752)
.+...+|+++|+.++|||||+++|+...-.... ...++.......+.+. +
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~--------------~ 54 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDY----------------ISTIGVDFKIKTVELD--------------G 54 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTC----------------CCSSCCCEEEEEEEET--------------T
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCC----------------CCcccceeEEEEEEEC--------------C
Confidence 456789999999999999999999653211000 0112222222223332 2
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HH---HHH---hCCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MY---ASK---FGVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~---~~~---~~~p~~~~inkld 154 (752)
..+.++|+||||+.+|.......++.+|++|+|+|+..... .+ +.. .++|.++++||+|
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 124 (206)
T 2bcg_Y 55 KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 124 (206)
T ss_dssp EEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC
Confidence 35789999999999998877888899999999999988644 11 222 2577788889888
No 97
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.91 E-value=2.4e-10 Score=113.16 Aligned_cols=103 Identities=18% Similarity=0.191 Sum_probs=69.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+..+|+++|+.++|||||+++|. +. .+.+ ..-|+......+.+.
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~-----------~~-~~~~-------~~~t~~~~~~~~~~~---------------- 67 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLK-----------DD-RLGQ-------HVPTLHPTSEELTIA---------------- 67 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHS-----------CC--------------CCCCCSCEEEEET----------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHh-----------cC-CCCc-------cCCCCCceeEEEEEC----------------
Confidence 445679999999999999999993 11 0100 112333333444553
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHH-------HhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYAS-------KFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~-------~~~~p~~~~inkld 154 (752)
+..++++||||+.+|.......++.+|++++|+|++..-. .+.. ..++|.+++.||+|
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D 137 (198)
T 1f6b_A 68 GMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKID 137 (198)
T ss_dssp TEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTT
T ss_pred CEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCC
Confidence 5899999999999887766677889999999999987632 1111 24788888999998
No 98
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.91 E-value=2.7e-10 Score=111.53 Aligned_cols=105 Identities=10% Similarity=0.049 Sum_probs=73.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+..+|+++|+.++|||||+++|+........ ...|+......+.+.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----------------~~~t~~~~~~~~~~~---------------- 65 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN-----------------ILPTIGFSIEKFKSS---------------- 65 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-----------------CCCCSSEEEEEEECS----------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCC-----------------cCCccceeEEEEEEC----------------
Confidence 34578999999999999999999432211100 112333222233332
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHHH-----hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYASK-----FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~~-----~~~p~~~~inkld 154 (752)
++.++|+||||+.+|.......++.+|++|+|+|+...-. .+... .++|.++++||+|
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 137 (190)
T 2h57_A 66 SLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMD 137 (190)
T ss_dssp SCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTT
T ss_pred CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcC
Confidence 5799999999999998888888899999999999987632 22222 4788889999998
No 99
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.91 E-value=3.2e-10 Score=120.69 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=45.9
Q ss_pred ceEEEEEcCCCCcc-------------cHHHHHHHHHhhcceEEEEec-chhHH--------HHHHHhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVD-------------FSSEVTAALRITDGALVVVDC-IEGVC--------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~d-------------f~~e~~~~l~~~D~avlvvda-~~Gv~--------~~~~~~~~p~~~~inkld 154 (752)
.+.++|+||||+.+ |...+..+++.+|++++|+|+ ..+.. .++...+.|.++++||+|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~D 209 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLD 209 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTT
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcc
Confidence 57899999999864 566677888999999999997 44432 334446899999999999
Q ss_pred C
Q 004467 155 G 155 (752)
Q Consensus 155 g 155 (752)
.
T Consensus 210 l 210 (315)
T 1jwy_B 210 L 210 (315)
T ss_dssp S
T ss_pred c
Confidence 3
No 100
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.91 E-value=6.5e-10 Score=108.17 Aligned_cols=105 Identities=18% Similarity=0.163 Sum_probs=69.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
.-+|+++|+.++|||||+++|+...- .....+ .+.......+.+ ++..+
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~---------------t~~~~~~~~~~~--------------~~~~~ 52 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHF--VDEYDP---------------TIEDSYRKQVVI--------------DGETC 52 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC--CCCCCT---------------TCCEEEEEEEEE--------------TTEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCC---------------CchheEEEEEEE--------------CCcEE
Confidence 45899999999999999999974331 110011 010000111112 12356
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH--------HHHH----HhCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--------MYAS----KFGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~--------~~~~----~~~~p~~~~inkld 154 (752)
.++|+||||+.+|.......++.+|++++|+|+..... .... ..++|.++++||+|
T Consensus 53 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 120 (189)
T 4dsu_A 53 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCD 120 (189)
T ss_dssp EEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTT
T ss_pred EEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcc
Confidence 78999999999999888889999999999999987533 1111 23788888899988
No 101
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.90 E-value=3.6e-10 Score=111.97 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=72.8
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~ 95 (752)
.+...+|+++|+.++|||||+++|+...-.. +....++.......+.+. +
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~--------------~ 71 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQ----------------DSNHTIGVEFGSRVVNVG--------------G 71 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC----------------------------CCEEEEEEEET--------------T
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCc----------------cCCCcccceeEEEEEEEC--------------C
Confidence 3557899999999999999999996321100 001112222222222221 2
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHH---HH---hCCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYA---SK---FGVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~---~~---~~~p~~~~inkld 154 (752)
..+.++|+||||+.+|.......++.+|++|+|+|+..... .+. .. .++|.+++.||+|
T Consensus 72 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 141 (200)
T 2o52_A 72 KTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKD 141 (200)
T ss_dssp EEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGG
T ss_pred eeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCC
Confidence 34789999999999888778888999999999999987654 222 11 3678888889988
No 102
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.90 E-value=7.1e-11 Score=132.60 Aligned_cols=107 Identities=20% Similarity=0.197 Sum_probs=74.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
...++|+|+|+.|+|||||+++|+...-. .+ +...|+|.+.....+.|.
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~---------~v------~~~~g~t~~~~~~~~~~~---------------- 69 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERIS---------IV------EDTPGVTRDRIYSSAEWL---------------- 69 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC--------------------------CEEEECTTC----------------
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCc---------cc------CCCCCcceeEEEEEEEEC----------------
Confidence 34679999999999999999999421110 01 112366666554444443
Q ss_pred ceEEEEEcCCC--------CcccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPG--------HVDFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPG--------h~df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
++.++++|||| +..|...+..+++.+|++|+|+|+..|+. .++++.++|+++++||+|
T Consensus 70 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D 142 (456)
T 4dcu_A 70 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLD 142 (456)
T ss_dssp SSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-
T ss_pred CceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECcc
Confidence 67899999999 66677778889999999999999998765 455567899999999998
No 103
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.90 E-value=3.4e-10 Score=108.06 Aligned_cols=107 Identities=12% Similarity=0.090 Sum_probs=71.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
+..+|+++|+.++|||||+++|+...-.- . .. ..-|.+.... .+.+. ...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~--~~-----------~~~~~~~~~~--~~~~~--------------~~~ 54 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDP-N--IN-----------PTIGASFMTK--TVQYQ--------------NEL 54 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCT-T--CC-----------CCCSEEEEEE--EEEET--------------TEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-C--CC-----------CceeEEEEEE--EEEEC--------------CeE
Confidence 45689999999999999999997443100 0 00 0012222111 12221 235
Q ss_pred eEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH--------HHHHHh---CCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--------MYASKF---GVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~--------~~~~~~---~~p~~~~inkld 154 (752)
+.+.++||||+.+|.......++.+|++++|+|+..... ..+... ++|.+++.||+|
T Consensus 55 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~D 122 (170)
T 1z0j_A 55 HKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 122 (170)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTT
T ss_pred EEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCc
Confidence 789999999999999888889999999999999987644 122222 455566668877
No 104
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.90 E-value=1.3e-10 Score=113.82 Aligned_cols=108 Identities=16% Similarity=0.180 Sum_probs=73.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+..+|+++|+.++|||||+++|+...-.... .. ..|.+... ..+.+. +.
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~------------t~~~~~~~--~~~~~~--------------~~ 62 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPEL--AA------------TIGVDFKV--KTISVD--------------GN 62 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTC--CC------------CCSEEEEE--EEEEET--------------TE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccC--CC------------ccceEEEE--EEEEEC--------------Ce
Confidence 34578999999999999999999753211000 00 00122211 122221 23
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHHH-------hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYASK-------FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~~-------~~~p~~~~inkld 154 (752)
.+.+.|+||||+.+|.......++.+|++|+|+|+..... .+... .++|.++++||+|
T Consensus 63 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~D 132 (195)
T 1x3s_A 63 KAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID 132 (195)
T ss_dssp EEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTT
T ss_pred EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCc
Confidence 6789999999999998888889999999999999988743 22221 2567777888887
No 105
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.90 E-value=9e-11 Score=130.97 Aligned_cols=104 Identities=21% Similarity=0.226 Sum_probs=69.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
..|+|+|++|+|||||+++|+...-.+ +.| .-|.|.+.....+.|. +..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~---------v~~------~~g~T~d~~~~~~~~~----------------~~~ 52 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISI---------VED------TPGVTRDRIYSSAEWL----------------NYD 52 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC--------------------------CEEEECTTC----------------SSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee---------ecC------CCCCccceEEEEEEEC----------------Cce
Confidence 579999999999999999994221111 111 2356655544444443 678
Q ss_pred EEEEcCCCCc--------ccHHHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 100 INLIDSPGHV--------DFSSEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~--------df~~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
++|+||||+. .|...+..+++.+|++|+|+|+..|.. .++++.++|+++++||+|
T Consensus 53 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D 122 (436)
T 2hjg_A 53 FNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLD 122 (436)
T ss_dssp CEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCC
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 9999999986 566677888999999999999998865 445567899999999998
No 106
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.90 E-value=3.8e-10 Score=110.73 Aligned_cols=108 Identities=17% Similarity=0.121 Sum_probs=73.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
....+|+++|+.++|||||+++|+...-.... ...++.......+.+. ++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~--------------~~ 68 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH----------------DLTIGVEFGARMVNID--------------GK 68 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC---------------------CCSSEEEEEEEET--------------TE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCC----------------CCcccceeEEEEEEEC--------------CE
Confidence 44679999999999999999999753211100 0011221112222222 23
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----H---HHHH---hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----M---YASK---FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~---~~~~---~~~p~~~~inkld 154 (752)
.+.++|+||||+.+|.......++.+|++|+|+|+..... . .+.. .++|.+++.||+|
T Consensus 69 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~D 137 (191)
T 2a5j_A 69 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 137 (191)
T ss_dssp EEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcc
Confidence 5789999999999998888889999999999999987643 1 2222 2678888889988
No 107
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.90 E-value=5.6e-10 Score=106.67 Aligned_cols=108 Identities=12% Similarity=0.069 Sum_probs=66.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
+...+|+++|+.++|||||+++|+...-. .. . --|+........+. .++.
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~--~---------------~~t~~~~~~~~~~~------------~~~~ 53 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFN-DK--H---------------ITTLGASFLTKKLN------------IGGK 53 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCC-SS--C---------------CCCCSCEEEEEEEE------------SSSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCC-cC--C---------------CCccceEEEEEEEE------------ECCE
Confidence 44578999999999999999999743211 00 0 01111111111222 1234
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HH---HH---HhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MY---AS---KFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~---~~---~~~~p~~~~inkld 154 (752)
.+.+.++||||+.+|.......++.+|++++|+|+..... .+ +. ..++|.+++.||+|
T Consensus 54 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 122 (170)
T 1z08_A 54 RVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID 122 (170)
T ss_dssp EEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGG
T ss_pred EEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcc
Confidence 5789999999999998777777889999999999987653 11 11 14677788889888
No 108
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.90 E-value=2.3e-10 Score=111.55 Aligned_cols=103 Identities=16% Similarity=0.120 Sum_probs=73.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+..+|+++|+.++|||||+++|+... .. ++ .-|+......+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~----------~~-------~~t~~~~~~~~~~~---------------- 60 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VD----------TI-------SPTLGFNIKTLEHR---------------- 60 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CS----------SC-------CCCSSEEEEEEEET----------------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CC----------cc-------cccCccceEEEEEC----------------
Confidence 467899999999999999999995322 11 00 01222222233342
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhH--H-------HHHH---HhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV--C-------MYAS---KFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv--~-------~~~~---~~~~p~~~~inkld 154 (752)
++.++++||||+.+|.......++.+|++++|+|+...- . .+.. ..++|.+++.||+|
T Consensus 61 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 130 (186)
T 1ksh_A 61 GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQD 130 (186)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCcc
Confidence 689999999999998877777888999999999998753 2 1111 14688888889998
No 109
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.88 E-value=3.9e-10 Score=115.13 Aligned_cols=109 Identities=18% Similarity=0.159 Sum_probs=68.9
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~ 95 (752)
....++|+++|+.|+|||||+++|+...-.. ..+..+++|.......+.|.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~--------------- 76 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFH--------------SGTAAKSITKKCEKRSSSWK--------------- 76 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSC--------------C-------CCSCEEEEEEET---------------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCc--------------cCCCCCceeeeEEEEEEEeC---------------
Confidence 3567899999999999999999996322211 11223356776666666664
Q ss_pred CceEEEEEcCCCCccc-------HHHHHHHHH----hhcceEEEEecchhHH-------HHH----HHhCCCHHHHHHHh
Q 004467 96 NEYLINLIDSPGHVDF-------SSEVTAALR----ITDGALVVVDCIEGVC-------MYA----SKFGVDESKMMERL 153 (752)
Q Consensus 96 ~~~~inliDtPGh~df-------~~e~~~~l~----~~D~avlvvda~~Gv~-------~~~----~~~~~p~~~~inkl 153 (752)
+..++|+||||+.+. ..++.+.+. .+|++|+|+|+..... .+. ...+.|+++++||+
T Consensus 77 -~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 77 -ETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp -TEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred -CceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 689999999997664 234444444 4599999999853211 222 22345788888988
Q ss_pred h
Q 004467 154 W 154 (752)
Q Consensus 154 d 154 (752)
|
T Consensus 156 D 156 (239)
T 3lxx_A 156 D 156 (239)
T ss_dssp G
T ss_pred c
Confidence 8
No 110
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.88 E-value=8.2e-10 Score=107.17 Aligned_cols=104 Identities=16% Similarity=0.140 Sum_probs=71.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccc-eEEEEEeeccchhccccCCCCCCc
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~-~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
..+|+++|+.++|||||+++|+... ....... |+... ...+.+ ++..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~--~~~~~~~----------------t~~~~~~~~~~~--------------~~~~ 52 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIP----------------TVFDNYSANVMV--------------DGKP 52 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS--CCSSCCC----------------CSCCEEEEEEEE--------------TTEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC--CCCCcCC----------------cccceeEEEEEE--------------CCEE
Confidence 4689999999999999999997432 1110000 11110 111122 2235
Q ss_pred eEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHHHh--CCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYASKF--GVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~~~--~~p~~~~inkld 154 (752)
+.++++||||+.+|.......++.+|++++|+|+..+.. ..+... ++|.+++.||+|
T Consensus 53 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 120 (186)
T 1mh1_A 53 VNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 120 (186)
T ss_dssp EEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHH
T ss_pred EEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEccc
Confidence 788899999999998777777889999999999987643 122222 788888889988
No 111
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.88 E-value=7.2e-10 Score=109.04 Aligned_cols=103 Identities=17% Similarity=0.085 Sum_probs=68.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+..+|+++|+.++|||||+++|+. +. +.+. .-|+......+.+ +
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~----------~~--~~~~-------~~t~~~~~~~~~~----------------~ 71 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL----------GE--IVTT-------IPTIGFNVETVEY----------------K 71 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS----------SC--CEEE-------EEETTEEEEEEEE----------------T
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh----------CC--cccc-------CCcCceeEEEEEE----------------C
Confidence 4567899999999999999999941 11 1110 1133322223333 3
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhH--H---HHHHH-------hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV--C---MYASK-------FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv--~---~~~~~-------~~~p~~~~inkld 154 (752)
++.++++||||+.+|.......++.+|++++|+|+...- . .+... .++|.+++.||+|
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~D 141 (192)
T 2b6h_A 72 NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQD 141 (192)
T ss_dssp TEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCC
Confidence 689999999999999888888899999999999998762 2 22211 2788888899998
No 112
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.88 E-value=2.9e-10 Score=111.51 Aligned_cols=118 Identities=16% Similarity=0.095 Sum_probs=73.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccC-CCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG-ERNG 95 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~-~~~~ 95 (752)
+...+|+++|+.++|||||++.|.... .....+.. ..... +..-| +.+.+.. ..- ..++
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~---~~~~~~~~-~~~~~----~~~~t-----~~~~~~~-------~~~~~~~~ 71 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKV---PEGRKGEM-VSLAT----EDERT-----LFFDFLP-------LDIGEVKG 71 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTS---CGGGBCCC-EEEEC----SSCEE-----EEEEECC-------SSCCCSSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhc---cccccccc-ccccc----ccccc-----eeeeecc-------cccccccC
Confidence 346789999999999999996553211 11000000 00000 00011 1112210 000 2234
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----------HHHHH-----hCCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----------MYASK-----FGVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----------~~~~~-----~~~p~~~~inkld 154 (752)
..+.++|+||||+.+|.......++.+|++|+|+|+..+.. .++.. .++|++++.||+|
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~D 146 (198)
T 3t1o_A 72 FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRD 146 (198)
T ss_dssp CEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTT
T ss_pred CceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchh
Confidence 57899999999999999999999999999999999995522 23333 4788888899988
No 113
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.88 E-value=6.5e-11 Score=117.13 Aligned_cols=108 Identities=17% Similarity=0.233 Sum_probs=74.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
+...+|+++|+.++|||||+++|+ +. ....+....++.+.....+.+. +.
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~-----------~~-----~~~~~~~~~~~~~~~~~~~~~~--------------~~ 80 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFA-----------DD-----TYTESYISTIGVDFKIRTIELD--------------GK 80 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSB-----------CC-----CCCCHHHHHHCCSEEEEEEEET--------------TE
T ss_pred CcceEEEEECCCCCCHHHHHHHHh-----------cC-----CCCCCcCCcccceEEEEEEEEC--------------CE
Confidence 457899999999999999999883 11 1112233344444444444443 23
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHH---HHh---CCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYA---SKF---GVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~---~~~---~~p~~~~inkld 154 (752)
.+.++|+||||+.+|.......++.+|++|+|+|+..... .+. ..+ ++|.+++.||+|
T Consensus 81 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D 149 (199)
T 3l0i_B 81 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 149 (199)
T ss_dssp EEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSS
T ss_pred EEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECcc
Confidence 4789999999999998777888899999999999997644 222 222 688889999998
No 114
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.87 E-value=3.2e-10 Score=111.41 Aligned_cols=103 Identities=16% Similarity=0.096 Sum_probs=72.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+..+|+++|+.++|||||+++|.... ... ...|+......+.+.
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~--~~~-----------------~~~t~~~~~~~~~~~---------------- 65 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDR--LAT-----------------LQPTWHPTSEELAIG---------------- 65 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSC--CCC-----------------CCCCCSCEEEEEEET----------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC--CCc-----------------cccCCCCCeEEEEEC----------------
Confidence 345689999999999999999996432 110 012333333344443
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHH-------HhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYAS-------KFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~-------~~~~p~~~~inkld 154 (752)
++.++++||||+.+|.......++.+|++++|+|++.+.. .+.. ..++|.+++.||+|
T Consensus 66 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D 135 (190)
T 1m2o_B 66 NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKID 135 (190)
T ss_dssp TEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTT
T ss_pred CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCC
Confidence 5899999999999987766677889999999999998732 1111 24788888899998
No 115
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.87 E-value=7.7e-10 Score=109.08 Aligned_cols=109 Identities=14% Similarity=0.152 Sum_probs=74.6
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~ 95 (752)
.++..+|+++|..++|||||+++|... ... +...|.+.......+.+. .+
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~---~~~--------------~~~~~~~~~~~~~~~~~~-------------~~ 66 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHK---MSP--------------NETLFLESTNKIYKDDIS-------------NS 66 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSC---CCG--------------GGGGGCCCCCSCEEEEEC-------------CT
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhc---CCC--------------cceeeeccccceeeeecc-------------CC
Confidence 455678999999999999999977421 110 011233333333333332 13
Q ss_pred CceEEEEEcCCCCcccHHHH---HHHHHhhcceEEEEecchhHH-------HHHHH-----hCCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHVDFSSEV---TAALRITDGALVVVDCIEGVC-------MYASK-----FGVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~---~~~l~~~D~avlvvda~~Gv~-------~~~~~-----~~~p~~~~inkld 154 (752)
..+.++|+||||+.+|.... ...++.+|++|+|+|++.... .++.. .++|++++.||+|
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 140 (196)
T 3llu_A 67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVD 140 (196)
T ss_dssp TSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGG
T ss_pred CeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccc
Confidence 46899999999999998777 788999999999999998622 23333 2788888889988
No 116
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.87 E-value=4e-10 Score=110.03 Aligned_cols=103 Identities=16% Similarity=0.105 Sum_probs=70.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+..+|+++|+.++|||||+++|+...-. ++ .-|+......+.+.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~------------~~-------~~t~~~~~~~~~~~---------------- 58 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV------------HT-------SPTIGSNVEEIVIN---------------- 58 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE------------EE-------ECCSCSSCEEEEET----------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC------------cC-------cCCCccceEEEEEC----------------
Confidence 45678999999999999999999632110 00 11222223334443
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchh--HH-------HHHH---HhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG--VC-------MYAS---KFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~G--v~-------~~~~---~~~~p~~~~inkld 154 (752)
++.++++||||+.+|.......++.+|++|+|+|+..+ .. .+.. ..++|.+++.||+|
T Consensus 59 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D 128 (187)
T 1zj6_A 59 NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQD 128 (187)
T ss_dssp TEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCC
Confidence 68999999999999988888889999999999999876 22 1111 14688888889988
No 117
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.87 E-value=8.2e-10 Score=109.76 Aligned_cols=107 Identities=16% Similarity=0.038 Sum_probs=72.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+..+|+++|+.++|||||+++|+...-.-.. .+ |+. ........ .++.
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~--~~----------------t~~-~~~~~~~~------------~~~~ 76 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY--IP----------------TVF-DNYSANVM------------VDGK 76 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-C--CC----------------CSE-EEEEEEEE------------CC-C
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCc--CC----------------eec-ceeEEEEE------------ECCE
Confidence 44568999999999999999999743221000 11 110 01111111 1234
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHHHh--CCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYASKF--GVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~~~--~~p~~~~inkld 154 (752)
.+.++|+||||+.+|.......++.+|++++|+|+..+.. ..+... ++|.+++.||+|
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 145 (204)
T 4gzl_A 77 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 145 (204)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHH
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechh
Confidence 6788899999999998888888899999999999998754 223333 788888899988
No 118
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.87 E-value=4.7e-10 Score=108.70 Aligned_cols=106 Identities=18% Similarity=0.172 Sum_probs=69.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
+..+|+++|+.++|||||+++|+...- ... .... .+.+. ...+.+ ++..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~-~~~-~~~t------------~~~~~---~~~~~~--------------~~~~ 53 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF-VDS-YDPT------------IENTF---TKLITV--------------NGQE 53 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CSC-CCTT------------CCEEE---EEEEEE--------------TTEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC-CCC-CCCC------------ccccE---EEEEEE--------------CCEE
Confidence 467899999999999999999974331 110 0010 01111 111112 2235
Q ss_pred eEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HH-------HHHhCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MY-------ASKFGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~-------~~~~~~p~~~~inkld 154 (752)
+.++|+||||+.+|.......++.+|++++|+|+...-. .+ ....++|.+++.||+|
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 122 (181)
T 3t5g_A 54 YHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 122 (181)
T ss_dssp EEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTT
T ss_pred EEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 788999999999987666677789999999999987432 11 1223788888899988
No 119
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.86 E-value=4e-10 Score=110.55 Aligned_cols=108 Identities=14% Similarity=0.115 Sum_probs=75.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
+...+|+++|+.++|||||+++|+...-.... .. ..|++.. ...+.+ ++.
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~------------t~~~~~~--~~~~~~--------------~~~ 70 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAF--VS------------TVGIDFK--VKTVYR--------------HEK 70 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCE--EE------------EETTTEE--EEEEEE--------------TTT
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCccc--CC------------CeeeEEE--EEEEEE--------------CCE
Confidence 45678999999999999999999754321100 00 0011221 111222 234
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH--------HHHHH---hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--------MYASK---FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~--------~~~~~---~~~p~~~~inkld 154 (752)
.+.++|+||||+..|.......++.+|++|+|+|+...-. ..+.. .++|.+++.||+|
T Consensus 71 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 139 (191)
T 3dz8_A 71 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCD 139 (191)
T ss_dssp TEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC
Confidence 6899999999999999989999999999999999986533 22222 3678888889988
No 120
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.85 E-value=1.9e-09 Score=112.30 Aligned_cols=107 Identities=17% Similarity=0.160 Sum_probs=68.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
....+|+++|+.|+|||||+++|+...-.... + ..+.|.......+.+.
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~---------~------~~~~t~~~~~~~~~~~---------------- 85 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSIS---------P------FQSEGPRPVMVSRSRA---------------- 85 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCC---------S------SSCCCSSCEEEEEEET----------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccc---------C------CCCcceeeEEEEEeeC----------------
Confidence 35779999999999999999999743221111 1 1233444434444443
Q ss_pred ceEEEEEcCCCCcccH---HHHHHHHH------hhcceEEEEecch-hHH--------HHHHHhC----CCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFS---SEVTAALR------ITDGALVVVDCIE-GVC--------MYASKFG----VDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~---~e~~~~l~------~~D~avlvvda~~-Gv~--------~~~~~~~----~p~~~~inkld 154 (752)
++.++|+||||+.+|. .+....+. .+|++|+|+|... ... .+...++ +|.++++||+|
T Consensus 86 ~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~D 165 (270)
T 1h65_A 86 GFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQ 165 (270)
T ss_dssp TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCS
T ss_pred CeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcc
Confidence 6899999999998875 33333433 5899999977653 211 2222334 47777888887
No 121
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.85 E-value=1.3e-09 Score=106.53 Aligned_cols=104 Identities=19% Similarity=0.216 Sum_probs=62.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccc-eEEEEEeeccchhccccCCCCCCc
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~-~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
..+|+++|+.++|||||+++|+...- .....+ |+... ...+.+ ++..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~----------------t~~~~~~~~~~~--------------~~~~ 68 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDP----------------TIEDSYRKQVVI--------------DGET 68 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--CSCCCT----------------TCCEEEEEEEEE--------------TTEE
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCC--ccccCC----------------ccceEEEEEEEE--------------CCEE
Confidence 46899999999999999999974321 110011 11100 111222 1235
Q ss_pred eEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH--------HHHHH----hCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--------MYASK----FGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~--------~~~~~----~~~p~~~~inkld 154 (752)
+.++|+||||+.+|.......++.+|++++|+|+..... ..+.. .++|.++++||+|
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~D 137 (190)
T 3con_A 69 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCD 137 (190)
T ss_dssp EEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTT
T ss_pred EEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCc
Confidence 789999999999998888888999999999999987643 11122 3788888999988
No 122
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.84 E-value=9.6e-10 Score=107.99 Aligned_cols=107 Identities=11% Similarity=0.119 Sum_probs=73.5
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceE-EEEEeeccchhccccCCCC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGI-SLYYEMTDDALKSYKGERN 94 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~-~~~~~~~~~~~~~~~~~~~ 94 (752)
..+..+|+++|+.++|||||+++|+...- ...... |+..... .+.+ +
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~----------------t~~~~~~~~~~~--------------~ 67 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVP----------------TVFENFSHVMKY--------------K 67 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCC----------------CSEEEEEEEEEE--------------T
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCC--CCccCC----------------eeeeeeEEEEEE--------------C
Confidence 34567899999999999999999975431 110011 1111111 1112 2
Q ss_pred CCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHHHh--CCCHHHHHHHhh
Q 004467 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYASKF--GVDESKMMERLW 154 (752)
Q Consensus 95 ~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~~~--~~p~~~~inkld 154 (752)
+..+.++|+||||+.+|.......++.+|++|+|+|+..... ..+... ++|.+++.||+|
T Consensus 68 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 138 (194)
T 3reg_A 68 NEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 138 (194)
T ss_dssp TEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGG
T ss_pred CEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChh
Confidence 235778999999999998888888899999999999997644 222223 678888889988
No 123
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.84 E-value=7.5e-10 Score=109.56 Aligned_cols=107 Identities=16% Similarity=0.112 Sum_probs=71.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+..+|+++|+.++|||||+++|+...-.... .. |+.... ...+. .++.
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~----------------t~~~~~-~~~~~------------~~~~ 70 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY--DP----------------TVENTY-SKIVT------------LGKD 70 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCC--CC----------------CSEEEE-EEEEC----------------
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCC--CC----------------ccceEE-EEEEE------------ECCE
Confidence 46789999999999999999999743211000 00 111111 01111 1224
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHH-------HhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYAS-------KFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~-------~~~~p~~~~inkld 154 (752)
.+.++|+||||+.+|.......++.+|++|+|+|+..... .+.. ..++|.+++.||+|
T Consensus 71 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 140 (201)
T 3oes_A 71 EFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKAD 140 (201)
T ss_dssp CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTT
T ss_pred EEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 6889999999999998777888899999999999996433 2222 23788888889988
No 124
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.83 E-value=8.4e-10 Score=110.48 Aligned_cols=119 Identities=15% Similarity=0.101 Sum_probs=74.4
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~ 95 (752)
.++..+|+++|+.++|||||+++|+...- .. +....+++......+.+..... .....+.
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~--------------~~~~t~~~~~~~~~~~~~~~~~----~~~~~~~ 81 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKF--NP--------------KFITTVGIDFREKRVVYNAQGP----NGSSGKA 81 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCC--CC--------------EEEEEEEEEEEEEEEEEEC-----------CCE
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCC--Cc--------------CCCCceeEEEEEEEEEECCccc----cccccCc
Confidence 35578999999999999999999963211 00 0000111111112222321000 0000011
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHHH-------hCCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYASK-------FGVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~~-------~~~p~~~~inkld 154 (752)
..+.++|+||||+.+|.......++.+|++|+|+|+..... .+... .++|.++++||+|
T Consensus 82 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~D 152 (217)
T 2f7s_A 82 FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKAD 152 (217)
T ss_dssp EEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTT
T ss_pred eeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCc
Confidence 15789999999999999888899999999999999987654 22222 3567778888887
No 125
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.83 E-value=2.7e-09 Score=102.93 Aligned_cols=104 Identities=17% Similarity=0.162 Sum_probs=68.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
..|+++|+.++|||||+++|......+.. + ..|.|.......+.+. +..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~---------~------~~~~t~~~~~~~~~~~----------------~~~ 53 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVT---------D------IAGTTRDVLREHIHID----------------GMP 53 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCC---------S------STTCCCSCEEEEEEET----------------TEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceee---------C------CCCceeceeeEEEEEC----------------CeE
Confidence 46999999999999999999643221111 0 0133433323334443 567
Q ss_pred EEEEcCCCCcccHHH--------HHHHHHhhcceEEEEecchhHH-------HHHHH---hCCCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVC-------MYASK---FGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~~e--------~~~~l~~~D~avlvvda~~Gv~-------~~~~~---~~~p~~~~inkld 154 (752)
+.++||||..++... +...++.+|++++|+|+..... ..... .++|.+++.||+|
T Consensus 54 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~D 126 (172)
T 2gj8_A 54 LHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKAD 126 (172)
T ss_dssp EEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHH
T ss_pred EEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECcc
Confidence 899999998764211 2345789999999999987532 22222 2689999999999
No 126
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.83 E-value=1.2e-09 Score=113.77 Aligned_cols=103 Identities=18% Similarity=0.231 Sum_probs=70.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
..+|+++|++|+|||||+++|....-. .| ++ -|+|+...... +. . +.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-----v~-----~~------pg~tv~~~~~~--~~--------------~-~~ 49 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR-----VG-----NW------PGVTVERKSGL--VK--------------K-NK 49 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC-----CC-----SS------SCCCCSCEEEE--CT--------------T-CT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-----cc-----CC------CCCcEEEEEEE--Ee--------------c-CC
Confidence 468999999999999999999522100 11 11 15666543322 11 2 46
Q ss_pred EEEEEcCCCCcccHH-----HHHH-HHH--hhcceEEEEecchhHH-----HHHHHhCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSS-----EVTA-ALR--ITDGALVVVDCIEGVC-----MYASKFGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~-----e~~~-~l~--~~D~avlvvda~~Gv~-----~~~~~~~~p~~~~inkld 154 (752)
.++++||||+.+|.. .+.+ .++ .+|++++|+|++.... .++.+.++|.++++||+|
T Consensus 50 ~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~~~~~~~l~~~~~p~ilv~NK~D 118 (272)
T 3b1v_A 50 DLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMID 118 (272)
T ss_dssp TEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTCSCEEEEEECHH
T ss_pred eEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhHHHHHHHHHhcCCCEEEEEEChh
Confidence 789999999988852 2222 333 4999999999987533 344567999999999999
No 127
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.83 E-value=1.2e-09 Score=104.84 Aligned_cols=106 Identities=10% Similarity=0.092 Sum_probs=62.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
...+|+++|+.++|||||+++|+...-.... ...|.+.... .+.+. +..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~---------------~~~~~~~~~~--~~~~~--------------~~~ 51 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH---------------EQLGEDVYER--TLTVD--------------GED 51 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C---------------CCSSSSEEEE--EEEET--------------TEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc---------------CccccceeEE--EEEEC--------------CEE
Confidence 4578999999999999999999532111000 0112232211 12222 235
Q ss_pred eEEEEEcCCCCccc--HHHHHHHHHhhcceEEEEecchhHH--------HHHHHh----CCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDF--SSEVTAALRITDGALVVVDCIEGVC--------MYASKF----GVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df--~~e~~~~l~~~D~avlvvda~~Gv~--------~~~~~~----~~p~~~~inkld 154 (752)
+.++++||||+..+ ..-....++.+|++++|+|++..-. ..+... ++|.+++.||+|
T Consensus 52 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~D 122 (175)
T 2nzj_A 52 TTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122 (175)
T ss_dssp EEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTT
T ss_pred EEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChh
Confidence 68999999999884 3333344567999999999986432 122232 788888999998
No 128
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.83 E-value=7.3e-10 Score=111.71 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=72.3
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~ 95 (752)
.+...+|+++|+.++|||||+++|+...-.... ...++.......+.+. +
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~--------------~ 59 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDS----------------KSTIGVEFATRTLEIE--------------G 59 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC----------------------CCSEEEEEEEET--------------T
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCC----------------CCcccceeEEEEEEEC--------------C
Confidence 355789999999999999999999753221100 0112222222223332 2
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HH---HHH---hCCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MY---ASK---FGVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~---~~~---~~~p~~~~inkld 154 (752)
..+.++|+||||+.+|.......++.+|++|+|+|+..+.. .+ +.. .++|.+++.||+|
T Consensus 60 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~D 129 (223)
T 3cpj_B 60 KRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSD 129 (223)
T ss_dssp EEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGG
T ss_pred EEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcc
Confidence 34789999999999998777788899999999999987654 11 222 2678888889888
No 129
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.82 E-value=5.6e-10 Score=111.88 Aligned_cols=113 Identities=12% Similarity=0.147 Sum_probs=73.6
Q ss_pred hcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCC
Q 004467 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGE 92 (752)
Q Consensus 13 ~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~ 92 (752)
|.......+|+++|+.++|||||+++|+... ... ....|+........+..
T Consensus 5 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~----------------~~~~t~~~~~~~~~~~~----------- 55 (218)
T 4djt_A 5 MERRELTYKICLIGDGGVGKTTYINRVLDGR--FEK----------------NYNATVGAVNHPVTFLD----------- 55 (218)
T ss_dssp -----CEEEEEEECCTTSSHHHHHCBCTTCS--TTC----------------EEETTTTEEEEEEEEEB-----------
T ss_pred cccccCccEEEEECCCCCCHHHHHHHHhcCC--CCC----------------CCCCccceeeEEEEEEe-----------
Confidence 3344567899999999999999999984211 000 00112222222222321
Q ss_pred CCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHH---H---hCCCHHHHHHHhh
Q 004467 93 RNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYAS---K---FGVDESKMMERLW 154 (752)
Q Consensus 93 ~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~---~---~~~p~~~~inkld 154 (752)
.++..+.++|+||||+.+|.......++.+|++|+|+|+..+.. .+.. . .++|.++++||+|
T Consensus 56 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 128 (218)
T 4djt_A 56 DQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKID 128 (218)
T ss_dssp TTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTT
T ss_pred CCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC
Confidence 11223789999999999998777788899999999999998754 1111 1 2688888899998
No 130
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.82 E-value=1e-09 Score=107.64 Aligned_cols=105 Identities=13% Similarity=0.241 Sum_probs=67.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+..+|+++|+.++|||||+++|+...- ... . ....|.|..... +.+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~--~-----------~~~~~~t~~~~~--~~~----------------- 67 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKN-LAR--T-----------SSKPGKTQTLNF--YII----------------- 67 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC---------------------------CCEEE--EEE-----------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccc--c-----------CCCCCceeeEEE--EEE-----------------
Confidence 4678999999999999999999963210 000 0 001123332211 111
Q ss_pred ceEEEEEcCCCC----------cccHHHHHHHHHhh---cceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGH----------VDFSSEVTAALRIT---DGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh----------~df~~e~~~~l~~~---D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
+..++++||||+ ..|...+...++.+ |++++|+|+..+.. .++...++|.++++||+|
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 145 (195)
T 1svi_A 68 NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKAD 145 (195)
T ss_dssp TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 236899999994 44444444445555 99999999987643 555667899999999998
No 131
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.82 E-value=1.7e-09 Score=106.07 Aligned_cols=105 Identities=19% Similarity=0.208 Sum_probs=73.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccce-EEEEEeeccchhccccCCCCCC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~-~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
...+|+++|+.++|||||+++|+...- ...... |+.... ..+.+ ++.
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~----------------t~~~~~~~~~~~--------------~~~ 64 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF--PEEYVP----------------TVFDHYAVSVTV--------------GGK 64 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC--CCSCCC----------------SSCCCEEEEEES--------------SSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCC----------------cccceeEEEEEE--------------CCE
Confidence 467999999999999999999975421 110011 111111 11122 223
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHHHh--CCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYASKF--GVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~~~--~~p~~~~inkld 154 (752)
.+.++|+||||+.+|.......++.+|++++|+|+..... ..+... ++|.+++.||+|
T Consensus 65 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 133 (194)
T 2atx_A 65 QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQID 133 (194)
T ss_dssp EEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTT
T ss_pred EEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChh
Confidence 5789999999999998777778889999999999987643 222333 788889999998
No 132
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.82 E-value=1e-09 Score=110.33 Aligned_cols=109 Identities=12% Similarity=0.117 Sum_probs=75.7
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~ 95 (752)
.....+|+++|+.++|||||+++|+...-.- . +. ...|.|....... + +.
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~-~-------~~------~t~~~~~~~~~~~--~--------------~~ 61 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEK-K-------YV------ATLGVEVHPLVFH--T--------------NR 61 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTC-E-------EE------TTTTEEEEEEEEE--E--------------TT
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCC-C-------CC------CccceeEEEEEEE--E--------------CC
Confidence 3456789999999999999999965332100 0 00 0112333322221 1 12
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHH---H--hCCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYAS---K--FGVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~---~--~~~p~~~~inkld 154 (752)
..+.++|+||||+.+|.......++.+|++|+|+|+..+.. .+.. + .++|.+++.||+|
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~D 130 (221)
T 3gj0_A 62 GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVD 130 (221)
T ss_dssp EEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTT
T ss_pred EEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCc
Confidence 36789999999999998888888999999999999998754 2222 1 2789999999999
No 133
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.81 E-value=2.3e-09 Score=106.13 Aligned_cols=105 Identities=13% Similarity=0.049 Sum_probs=72.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccce-EEEEEeeccchhccccCCCCCC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~-~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
...+|+++|+.++|||||+++|....-.... .. |+.... ..+.+. +.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~----------------t~~~~~~~~~~~~--------------~~ 71 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY--VP----------------TVFENYIADIEVD--------------GK 71 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSC--CC----------------SSCCCCEEEEEET--------------TE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCccc--CC----------------cccceEEEEEEEC--------------CE
Confidence 3568999999999999999999753321100 00 111111 112221 23
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHHHh--CCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYASKF--GVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~~~--~~p~~~~inkld 154 (752)
.+.+.|+||||+.+|.......++.+|++++|+|+...-. ..+... ++|.++++||+|
T Consensus 72 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 140 (201)
T 2gco_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 140 (201)
T ss_dssp EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGG
T ss_pred EEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHH
Confidence 5789999999999998777778889999999999986432 233333 789999999998
No 134
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.81 E-value=1.1e-09 Score=107.08 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=68.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
....+|+++|+.++|||||+++|+...-.... + ..|.|.... +...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~---------~------~~~~t~~~~---~~~~---------------- 66 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVS---------K------TPGKTRSIN---FYLV---------------- 66 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCC---------S------SCCCCCCEE---EEEE----------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcccccc---------C------CCCCccCeE---EEEE----------------
Confidence 45678999999999999999999754311110 0 012232211 1121
Q ss_pred ceEEEEEcCCC----------CcccH---HHHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPG----------HVDFS---SEVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPG----------h~df~---~e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
+..+.++|||| +..|. ....+....+|++++|+|+..+.. .++...++|.++++||+|
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 144 (195)
T 3pqc_A 67 NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMD 144 (195)
T ss_dssp TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChh
Confidence 34688999999 33333 334444455699999999987633 566778999999999998
No 135
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.81 E-value=4.7e-10 Score=108.99 Aligned_cols=103 Identities=14% Similarity=0.068 Sum_probs=73.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+..+|+++|+.++|||||+++|+...- .. + .-|+......+.+.
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~-------~----------~~t~~~~~~~~~~~---------------- 63 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV--VH-------T----------SPTIGSNVEEIVIN---------------- 63 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC--EE-------E----------ECCSSSSCEEEEET----------------
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC--Cc-------c----------CCcCceeeEEEEEC----------------
Confidence 3457899999999999999999963211 00 0 11222222334443
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchh--HH-------HHHH---HhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG--VC-------MYAS---KFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~G--v~-------~~~~---~~~~p~~~~inkld 154 (752)
++.++++||||+.+|.......++.+|++++|+|+... .. .+.. ..++|.++++||+|
T Consensus 64 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D 133 (181)
T 2h17_A 64 NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQD 133 (181)
T ss_dssp TEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCC
Confidence 68999999999999988778888999999999999875 32 1121 25688888889998
No 136
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.80 E-value=3.2e-09 Score=105.77 Aligned_cols=107 Identities=15% Similarity=0.085 Sum_probs=71.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
....+|+++|+.++|||||+++|+...- ...... |+.... ...+. .++.
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~----------------t~~~~~-~~~~~------------~~~~ 55 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIP----------------TVFDNF-SANVA------------VDGQ 55 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCC----------------SSCCCE-EEEEE------------CSSC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCC--CccCCC----------------ccceeE-EEEEE------------ECCE
Confidence 3557899999999999999999974321 110011 111111 11111 1224
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHHHh--CCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYASKF--GVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~~~--~~p~~~~inkld 154 (752)
.+.++|+||||+.+|.......++.+|++|+|+|+..... ..+... ++|.+++.||+|
T Consensus 56 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 124 (212)
T 2j0v_A 56 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLD 124 (212)
T ss_dssp EEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHH
T ss_pred EEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHH
Confidence 5799999999999998777778889999999999987643 122222 788888889988
No 137
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.80 E-value=3.6e-10 Score=110.48 Aligned_cols=103 Identities=16% Similarity=0.082 Sum_probs=72.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
++..+|+++|+.++|||||+++|.. +. +.+. .-|+......+.+.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~----------~~--~~~~-------~~t~~~~~~~~~~~---------------- 64 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL----------GD--VVTT-------VPTVGVNLETLQYK---------------- 64 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC----------SC--CEEE-------CSSTTCCEEEEEET----------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc----------CC--CCCc-------CCCCceEEEEEEEC----------------
Confidence 3567899999999999999999931 11 1111 11332223334443
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchh--HH---HHHHH-------hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG--VC---MYASK-------FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~G--v~---~~~~~-------~~~p~~~~inkld 154 (752)
++.++++||||+.+|.......++.+|++++|+|+... .. .+... .++|.+++.||+|
T Consensus 65 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 134 (189)
T 2x77_A 65 NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQD 134 (189)
T ss_dssp TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCC
Confidence 68999999999999877767778899999999999865 22 11211 3688888899998
No 138
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.80 E-value=5.1e-09 Score=103.02 Aligned_cols=105 Identities=15% Similarity=0.131 Sum_probs=70.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccce-EEEEEeeccchhccccCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~-~~~~~~~~~~~~~~~~~~~~~ 95 (752)
.+..+|+++|+.++|||||+++|+...-.... . -|+.... ..+.+ ++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~--~----------------~t~~~~~~~~~~~--------------~~ 73 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEY--D----------------PTLESTYRHQATI--------------DD 73 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCC--C----------------TTCCEEEEEEEEE--------------TT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCccc--C----------------CCCCceEEEEEEE--------------CC
Confidence 44578999999999999999999753211000 0 0111111 11122 12
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH--------HHHH----HhCCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--------MYAS----KFGVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~--------~~~~----~~~~p~~~~inkld 154 (752)
..+.++|+||||+.+ .......++.+|++++|+|++..-. ..+. ..++|.+++.||+|
T Consensus 74 ~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~D 143 (196)
T 2atv_A 74 EVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKAD 143 (196)
T ss_dssp EEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGG
T ss_pred EEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcc
Confidence 357899999999998 5567778889999999999987422 1111 24788888999998
No 139
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.80 E-value=2.1e-09 Score=106.90 Aligned_cols=105 Identities=14% Similarity=0.058 Sum_probs=71.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccce-EEEEEeeccchhccccCCCCCC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~-~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
...+|+++|+.++|||||+++|+...-.... . -|+.... ..+.+ ++.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~----------------~t~~~~~~~~~~~--------------~~~ 71 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVY--V----------------PTVFENYVADIEV--------------DGK 71 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-------------------------CCEEEEEEEE--------------TTE
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcC--C----------------CcccceEEEEEEE--------------CCE
Confidence 3568999999999999999999753211000 0 0111111 11122 123
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHHHh--CCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYASKF--GVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~~~--~~p~~~~inkld 154 (752)
.+.+.|+||||+.+|.......++.+|++|+|+|+...-. ..+... ++|.++++||+|
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 140 (207)
T 2fv8_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD 140 (207)
T ss_dssp EEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGG
T ss_pred EEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchh
Confidence 5789999999999998777778889999999999987532 222333 788888899988
No 140
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.78 E-value=3.1e-09 Score=101.41 Aligned_cols=106 Identities=14% Similarity=0.073 Sum_probs=62.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
+-+|+++|+.++|||||+++|+........ ....+.......+.+ ++..+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~--------------~~~~~ 51 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAH----------------EMENSEDTYERRIMV--------------DKEEV 51 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC----------------------------CEEEEEEEE--------------TTEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccc----------------cCCCcCCeeeEEEEE--------------CCeEE
Confidence 468999999999999999999532211100 000111111122222 22367
Q ss_pred EEEEEcCCCCcccHHH-HHHHHHhhcceEEEEecchhHH---------HHHHH---hCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSE-VTAALRITDGALVVVDCIEGVC---------MYASK---FGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e-~~~~l~~~D~avlvvda~~Gv~---------~~~~~---~~~p~~~~inkld 154 (752)
.+.++||||+.+|... ....++.+|++++|+|+...-. .+... .++|.+++.||+|
T Consensus 52 ~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 120 (169)
T 3q85_A 52 TLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSD 120 (169)
T ss_dssp EEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTT
T ss_pred EEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcc
Confidence 8999999999998763 3345778999999999987433 11111 2789999999988
No 141
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.27 E-value=6.7e-10 Score=110.14 Aligned_cols=107 Identities=15% Similarity=0.113 Sum_probs=72.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+..+|+++|+.++|||||+++|+... ....... .+.......+.+ ++.
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~---------------t~~~~~~~~~~~--------------~~~ 76 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIP---------------TVFDNYSANVMV--------------DGK 76 (204)
Confidence 456789999999999999999996322 1100000 000000001111 123
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHHHh--CCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYASKF--GVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~~~--~~p~~~~inkld 154 (752)
.+.++++||||+.+|.......++.+|++|+|+|+..+.. ..+... ++|.+++.||+|
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D 145 (204)
T 3th5_A 77 PVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 145 (204)
Confidence 5678899999999998888888999999999999987643 112222 789999999999
No 142
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.77 E-value=4.5e-10 Score=108.93 Aligned_cols=103 Identities=16% Similarity=0.099 Sum_probs=69.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
++..+|+++|+.++|||||+++|+. ++ +. ...-|+......+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~----------~~--~~-------~~~~t~~~~~~~~~~~---------------- 60 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI----------GE--VV-------TTKPTIGFNVETLSYK---------------- 60 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC----------SE--EE-------EECSSTTCCEEEEEET----------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc----------CC--cC-------ccCCcCccceEEEEEC----------------
Confidence 5678999999999999999999941 11 00 0012333223334443
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhH--H---HHHH-------HhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV--C---MYAS-------KFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv--~---~~~~-------~~~~p~~~~inkld 154 (752)
+..++++||||+.+|.......++.+|++++|+|+.... . .+.. ..++|.++++||+|
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 130 (183)
T 1moz_A 61 NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130 (183)
T ss_dssp TEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCC
Confidence 689999999999998877778889999999999998652 2 1111 24678888889998
No 143
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.77 E-value=9.7e-10 Score=106.33 Aligned_cols=106 Identities=16% Similarity=0.160 Sum_probs=66.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
...+|+++|+.++|||||+++|+...- .....+ +..| .... . +.+ ++..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~--~~~~~~--t~~~----------~~~~-~--~~~--------------~~~~ 55 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVP--TVFD----------NFSA-N--VVV--------------NGAT 55 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC--C----------------------CBC-C--CC-------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCC--eeee----------eEEE-E--EEE--------------CCEE
Confidence 456899999999999999999974321 110000 0000 0000 0 001 1235
Q ss_pred eEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHHHh--CCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYASKF--GVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~~~--~~p~~~~inkld 154 (752)
+.++|+||||+.+|.......++.+|++++|+|+..... ..+... ++|.+++.||+|
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 123 (182)
T 3bwd_D 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLD 123 (182)
T ss_dssp --CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHH
T ss_pred EEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechh
Confidence 678899999999998877788899999999999986543 122222 788888889988
No 144
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.77 E-value=1.6e-09 Score=116.17 Aligned_cols=100 Identities=16% Similarity=0.077 Sum_probs=68.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
.+|+|+|+.++|||||+++|+ +.. +.... -|+......+.+. ++.
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~-----------~~~-~~~~~-------pT~~~~~~~~~~~----------------~~~ 210 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLK-----------LGE-IVTTI-------PTIGFNVETVEYK----------------NIS 210 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTC-----------SSC-CEEEE-------EETTEEEEEEEET----------------TEE
T ss_pred ceEEEECCCCccHHHHHHHHh-----------CCC-CCCcc-------cccceEEEEEecC----------------cEE
Confidence 479999999999999999993 211 11111 1444444444443 789
Q ss_pred EEEEcCCCCcccHHHHHHHHHhhcceEEEEecch--hHH-------HHHHH---hCCCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE--GVC-------MYASK---FGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~D~avlvvda~~--Gv~-------~~~~~---~~~p~~~~inkld 154 (752)
++|+||||+.+|.......++.+|++|+|+|++. ... .+... .++|+++++||+|
T Consensus 211 l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~D 277 (329)
T 3o47_A 211 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 277 (329)
T ss_dssp EEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECcc
Confidence 9999999999999888899999999999999964 332 11222 2788889999999
No 145
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.76 E-value=4.7e-09 Score=105.03 Aligned_cols=105 Identities=12% Similarity=0.085 Sum_probs=57.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccc-eEEEEEeeccchhccccCCCCCC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~-~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
+..+|+++|+.++|||||+++|+... ... ++ .-|+... ...+.+ ++.
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~--~~~---------~~-------~~t~~~~~~~~~~~--------------~~~ 80 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGA--FPE---------SY-------TPTVFERYMVNLQV--------------KGK 80 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------------------------CCCCCEEEEEEEEE--------------TTE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCC--CCC---------CC-------CCccceeEEEEEEE--------------CCE
Confidence 45689999999999999999996321 100 00 0011111 111112 223
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH------HH---HHH--hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC------MY---ASK--FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~------~~---~~~--~~~p~~~~inkld 154 (752)
.+.++|+||||+.+|.......++.+|++|+|+|+..... .+ +.. .++|++++.||+|
T Consensus 81 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 149 (214)
T 2j1l_A 81 PVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTD 149 (214)
T ss_dssp EEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGG
T ss_pred EEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChh
Confidence 5789999999999998888888999999999999987643 11 112 2788888889988
No 146
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.75 E-value=1.3e-09 Score=121.92 Aligned_cols=103 Identities=17% Similarity=0.224 Sum_probs=64.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEE
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (752)
+|+|+|++|+|||||+++|+.....+..... |.|.+.....+.+. ++.+
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~---------------gtT~d~~~~~i~~~----------------g~~v 274 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQSDRAIVTDLP---------------GTTRDVVESQLVVG----------------GIPV 274 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHBSCCSCCT---------------TCCHHHHHHEEEET----------------TEEE
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCC---------------CeeEEEEEEEEEEC----------------CEEE
Confidence 6999999999999999999877544322112 23433333334443 6789
Q ss_pred EEEcCCCCcccHHHHHH--------HHHhhcceEEEEecchhHH----HHHHH-hCCCHHHHHHHhh
Q 004467 101 NLIDSPGHVDFSSEVTA--------ALRITDGALVVVDCIEGVC----MYASK-FGVDESKMMERLW 154 (752)
Q Consensus 101 nliDtPGh~df~~e~~~--------~l~~~D~avlvvda~~Gv~----~~~~~-~~~p~~~~inkld 154 (752)
+|+||||+.++...+.. .++.+|++|+|+|+..+.. .+.+. ...|.++++||+|
T Consensus 275 ~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~D 341 (462)
T 3geh_A 275 QVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKID 341 (462)
T ss_dssp EECC--------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTT
T ss_pred EEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCC
Confidence 99999999887654433 4567999999999998754 22222 3478899999999
No 147
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.74 E-value=2.1e-09 Score=102.20 Aligned_cols=104 Identities=13% Similarity=0.026 Sum_probs=55.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
.-+|+++|+.++|||||+++|+...-. . . ....|.|.. ..+.+ ++..+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~--~-------~------~~~~~~~~~---~~~~~--------------~~~~~ 49 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG--P-------E------AEAAGHTYD---RSIVV--------------DGEEA 49 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-------------------------CEEE---EEEEE--------------TTEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc--C-------C------CCccccceE---EEEEE--------------CCEEE
Confidence 347999999999999999999411100 0 0 001122221 11112 22467
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH--------HHHHH----hCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--------MYASK----FGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~--------~~~~~----~~~p~~~~inkld 154 (752)
.+++.||||+.+|.......++.+|++++|+|+...-. ..+.. .++|.+++.||+|
T Consensus 50 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 117 (166)
T 3q72_A 50 SLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSD 117 (166)
T ss_dssp EEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTT
T ss_pred EEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccc
Confidence 89999999999998888888899999999999985432 11122 3788889999998
No 148
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.74 E-value=1e-09 Score=108.62 Aligned_cols=107 Identities=12% Similarity=0.093 Sum_probs=54.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhccee--ccceEEEEEeeccchhccccCCCCC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITI--KSTGISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi--~s~~~~~~~~~~~~~~~~~~~~~~~ 95 (752)
...+|+++|+.++|||||+++|+........ ++ .-|+ +.....+.+. +
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~---------~~-------~~t~~~~~~~~~~~~~--------------~ 68 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLK---------DY-------AMTSGVEVVVAPVTIP--------------D 68 (208)
T ss_dssp EEEEEEEC--------------------------------------------------CEEEECT--------------T
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccC---------CC-------CCccceEEEEEEEEEC--------------C
Confidence 3468999999999999999999643111110 00 0111 1112222232 2
Q ss_pred C--ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHH---HH------hCCCHHHHHHHhh
Q 004467 96 N--EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYA---SK------FGVDESKMMERLW 154 (752)
Q Consensus 96 ~--~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~---~~------~~~p~~~~inkld 154 (752)
. .+.++|+||||+.+|.......++.+|++|+|+|+..+.. .+. .. .++|.+++.||+|
T Consensus 69 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~D 143 (208)
T 2yc2_C 69 TTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTD 143 (208)
T ss_dssp SSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-
T ss_pred cccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcc
Confidence 2 5789999999999998877778889999999999987754 222 22 3778888889988
No 149
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.74 E-value=3e-09 Score=112.94 Aligned_cols=106 Identities=13% Similarity=0.161 Sum_probs=74.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
-..|+++|..++|||||+++|+....... ....|.|+......+.+. +++
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~---------------~~~~~~Ti~~~~~~~~~~---------------~~~ 52 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFD---------------TRRLGATIDVEHSHLRFL---------------GNM 52 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGG---------------GGGCCCCCSEEEEEEEET---------------TTE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcc---------------ccCcCCccceEEEEEEeC---------------Cce
Confidence 35799999999999999999863321111 112345666655555442 268
Q ss_pred EEEEEcCCCCcccH-----HHHHHHHHhhcceEEEEecchhHH--------HHHHHh-----CCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFS-----SEVTAALRITDGALVVVDCIEGVC--------MYASKF-----GVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~-----~e~~~~l~~~D~avlvvda~~Gv~--------~~~~~~-----~~p~~~~inkld 154 (752)
.++++||||+.+|. ......++.+|++|+|+|++.... .+...+ ++|.++++||+|
T Consensus 53 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~D 126 (307)
T 3r7w_A 53 TLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMD 126 (307)
T ss_dssp EEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGG
T ss_pred EEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeccc
Confidence 99999999999983 344556678999999999987532 112222 789999999998
No 150
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.73 E-value=4.3e-09 Score=105.37 Aligned_cols=102 Identities=18% Similarity=0.219 Sum_probs=70.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+..+|+++|+.|+|||||+++|+...-.... .. . ..|+.. .+ .
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~--~~------~-------~~~~~~-----~~----------------~ 53 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV--VS------Q-------EPLSAA-----DY----------------D 53 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBC--CC------S-------SCEEET-----TG----------------G
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCee--ee------c-------CceEEE-----Ee----------------e
Confidence 45679999999999999999999754311000 00 0 001100 00 2
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHh----hcceEEEEecc---hhHH-------HHHH------HhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRI----TDGALVVVDCI---EGVC-------MYAS------KFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~----~D~avlvvda~---~Gv~-------~~~~------~~~~p~~~~inkld 154 (752)
...++++||||+.+|.......++. +|++|+|+|+. +... .+.. ..++|.+++.||+|
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 131 (218)
T 1nrj_B 54 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSE 131 (218)
T ss_dssp GSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTT
T ss_pred CceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchH
Confidence 5688999999999998887777776 89999999998 3322 1111 14788888999988
No 151
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.73 E-value=5e-09 Score=101.94 Aligned_cols=107 Identities=11% Similarity=0.031 Sum_probs=71.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
....+|+++|+.++|||||+++|+...-. ... . -|+.... ...+. .++.
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~-~~~-~----------------~t~~~~~-~~~~~------------~~~~ 53 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFP-ENY-V----------------PTVFENY-TASFE------------IDTQ 53 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC-SSC-C----------------CCSEEEE-EEEEE------------CSSC
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCC-CCC-C----------------CccceeE-EEEEE------------ECCE
Confidence 45678999999999999999999753211 000 0 0111100 01111 1234
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHHH--hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYASK--FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~~--~~~p~~~~inkld 154 (752)
.+.+.|+||||+.+|.......++.+|++|+|+|+..... ..+.. .++|.+++.||+|
T Consensus 54 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 122 (184)
T 1m7b_A 54 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD 122 (184)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGG
T ss_pred EEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcch
Confidence 6789999999999987766677889999999999986543 11222 2678888889988
No 152
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.71 E-value=4.1e-09 Score=117.63 Aligned_cols=106 Identities=15% Similarity=0.253 Sum_probs=71.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
...+|+|+|+.|+|||||+++|+.....+.. +. -|.|.+.....+.|. +
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~---------~~------~gtT~d~~~~~i~~~----------------g 227 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVS---------PI------PGTTRDPVDDEVFID----------------G 227 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CC------C------CCEEEEET----------------T
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccC---------CC------CCCcCCceEEEEEEC----------------C
Confidence 3568999999999999999999643221111 11 145655555556664 6
Q ss_pred eEEEEEcCCCCcccHH------------HHHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDFSS------------EVTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df~~------------e~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
..+.++||||...+.. .+..+++.+|++++|+|+..|.. .++...++|.++++||+|
T Consensus 228 ~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~D 303 (439)
T 1mky_A 228 RKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWD 303 (439)
T ss_dssp EEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGG
T ss_pred EEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 6899999999854332 23567889999999999988653 455667999999999999
No 153
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.71 E-value=6.4e-09 Score=108.46 Aligned_cols=114 Identities=17% Similarity=0.249 Sum_probs=64.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
..||+++|+.|+|||||+++|+........ +. ........++++......+.+. +...
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~-------~~-~~~~~~~~t~~~~~~~~~~~~~--------------~~~~ 65 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPE-------YP-GPSHRIKKTVQVEQSKVLIKEG--------------GVQL 65 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC-----------------------CCCEEEEEEECC----------------CCE
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccC-------CC-CcccccCCceEEEEEEEEEecC--------------CeEE
Confidence 468999999999999999999422211110 00 0001113344444433333332 2346
Q ss_pred EEEEEcCCCCcccHH------HH--------HHHHHh-------------hcceEEEEecch-hHH----HHHHHh--CC
Q 004467 99 LINLIDSPGHVDFSS------EV--------TAALRI-------------TDGALVVVDCIE-GVC----MYASKF--GV 144 (752)
Q Consensus 99 ~inliDtPGh~df~~------e~--------~~~l~~-------------~D~avlvvda~~-Gv~----~~~~~~--~~ 144 (752)
.++|+||||+.|+.. .+ ...++. +|+++++|+... |.. .+++.+ ++
T Consensus 66 ~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~ 145 (274)
T 3t5d_A 66 LLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKV 145 (274)
T ss_dssp EEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTTTS
T ss_pred EEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhccC
Confidence 999999999965422 11 233333 678888886654 543 222222 78
Q ss_pred CHHHHHHHhh
Q 004467 145 DESKMMERLW 154 (752)
Q Consensus 145 p~~~~inkld 154 (752)
|+++|+||+|
T Consensus 146 pvi~V~nK~D 155 (274)
T 3t5d_A 146 NIIPLIAKAD 155 (274)
T ss_dssp CEEEEESSGG
T ss_pred CEEEEEeccC
Confidence 9999999988
No 154
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.71 E-value=4.2e-09 Score=103.87 Aligned_cols=106 Identities=13% Similarity=0.045 Sum_probs=69.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccce-EEEEEeeccchhccccCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~-~~~~~~~~~~~~~~~~~~~~~ 95 (752)
....+|+++|+.++|||||+++|+... ...... -|+.... ..+.+ ++
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~----------------~t~~~~~~~~~~~--------------~~ 65 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYI----------------PTAFDNFSAVVSV--------------DG 65 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC--------------------------CCSSEEEEEEEEE--------------TT
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC--CCCCCC----------------CcccceeEEEEEE--------------CC
Confidence 456789999999999999999996322 111000 1111111 11122 12
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH------HH---HHHh--CCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC------MY---ASKF--GVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~------~~---~~~~--~~p~~~~inkld 154 (752)
..+.+.|+||||+.+|.......++.+|++|+|+|+..... .+ +... ++|.+++.||+|
T Consensus 66 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 135 (201)
T 2q3h_A 66 RPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSD 135 (201)
T ss_dssp EEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGG
T ss_pred EEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHh
Confidence 35688899999999987766667889999999999987643 11 2222 788888889988
No 155
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.71 E-value=2.5e-09 Score=104.79 Aligned_cols=102 Identities=19% Similarity=0.193 Sum_probs=66.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
....+|+++|+.++|||||+++|+...-... .. . ...+++. .+ .
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~---~~-----~-----~~~~~~~-------~~----------------~ 89 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VV-----S-----QEPLSAA-------DY----------------D 89 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------------------CC----------------C
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcc---cc-----c-----CCCceee-------ee----------------c
Confidence 4457999999999999999999964321000 00 0 0000110 11 2
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHh----hcceEEEEecc-hhHH---------HHHHH------hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRI----TDGALVVVDCI-EGVC---------MYASK------FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~----~D~avlvvda~-~Gv~---------~~~~~------~~~p~~~~inkld 154 (752)
.+.++++||||+.+|.......++. +|++|+|+|+. ..-. .+... .++|+++++||+|
T Consensus 90 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 167 (193)
T 2ged_A 90 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSE 167 (193)
T ss_dssp CTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTT
T ss_pred CCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchH
Confidence 5678899999999987666666665 89999999998 2211 11111 3789999999998
No 156
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.70 E-value=1.4e-09 Score=122.07 Aligned_cols=105 Identities=16% Similarity=0.144 Sum_probs=58.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
.+|+++|++|+|||||+++|+.....+.. + ..|.|.+.....+.+. ++.
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs---------~------~~gtT~d~~~~~i~~~----------------g~~ 282 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVS---------H------MPGTTRDYIEECFIHD----------------KTM 282 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC---------------------------------CEEEEET----------------TEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccC---------C------CCCceEEEEEEEEEEC----------------CeE
Confidence 35999999999999999999644321111 1 1245665555555553 689
Q ss_pred EEEEcCCCCcccHHHHHH--------HHHhhcceEEEEecchhHH--------HHHHH-hCCCHHHHHHHhhC
Q 004467 100 INLIDSPGHVDFSSEVTA--------ALRITDGALVVVDCIEGVC--------MYASK-FGVDESKMMERLWG 155 (752)
Q Consensus 100 inliDtPGh~df~~e~~~--------~l~~~D~avlvvda~~Gv~--------~~~~~-~~~p~~~~inkldg 155 (752)
++|+||||+.+|...+.. .++.+|++|+|+|+..+.. .+... .++|.++++||+|-
T Consensus 283 l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl 355 (476)
T 3gee_A 283 FRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDR 355 (476)
T ss_dssp EEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTS
T ss_pred EEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCC
Confidence 999999999887654432 4578999999999997643 22332 26888999999993
No 157
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.69 E-value=2.1e-09 Score=122.89 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=45.3
Q ss_pred eEEEEEcCCCCcc-----------cHHHHHHHHHhhcceEEEEecch-hHH----H---HHHHhCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVD-----------FSSEVTAALRITDGALVVVDCIE-GVC----M---YASKFGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~d-----------f~~e~~~~l~~~D~avlvvda~~-Gv~----~---~~~~~~~p~~~~inkld 154 (752)
..++||||||+.+ |...+...+..+|++|+|+|+.. +.. . .+...+.|.++++||+|
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~D 229 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKAD 229 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGG
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCC
Confidence 4689999999876 77788889999999999999976 322 2 23334678888899999
No 158
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.69 E-value=1.3e-08 Score=99.34 Aligned_cols=105 Identities=14% Similarity=0.085 Sum_probs=67.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccce-EEEEEeeccchhccccCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~-~~~~~~~~~~~~~~~~~~~~~ 95 (752)
.+..+|+++|..++|||||+++|+...- ... ... |+.... ..+.+ ++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~-~~~-~~~----------------t~~~~~~~~~~~--------------~~ 66 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRF-ISE-YDP----------------NLEDTYSSEETV--------------DH 66 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSC-CSC-CCT----------------TCCEEEEEEEEE--------------TT
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCC-Ccc-cCC----------------CccceeeEEEEE--------------CC
Confidence 4457899999999999999999975431 110 000 111111 11111 22
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HH---HHH------hCCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MY---ASK------FGVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~---~~~------~~~p~~~~inkld 154 (752)
..+.+.|+||||+.+|.. +...++.+|++++|+|+..... .+ +.. .++|++++.||+|
T Consensus 67 ~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~D 138 (187)
T 3c5c_A 67 QPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLD 138 (187)
T ss_dssp EEEEEEEEECCC---CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGG
T ss_pred EEEEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcc
Confidence 367899999999988864 4678889999999999986533 11 111 3788888899988
No 159
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.68 E-value=8.6e-09 Score=102.55 Aligned_cols=108 Identities=11% Similarity=0.035 Sum_probs=71.3
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~ 95 (752)
.+...+|+++|..++|||||+++|+...-. ... . -|+.... ...+. .++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~-~----------------~t~~~~~-~~~~~------------~~~ 73 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFP-ENY-V----------------PTVFENY-TASFE------------IDT 73 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCC-SSC-C----------------CCSEEEE-EEEEE------------SSS
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCC-CCc-C----------------CccceeE-EEEEE------------ECC
Confidence 355679999999999999999999753211 000 0 0111111 11111 123
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHHH--hCCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYASK--FGVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~~--~~~p~~~~inkld 154 (752)
..+.++|+||||+.+|.......++.+|++|+|+|+..... ..+.. .++|++++.||+|
T Consensus 74 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 143 (205)
T 1gwn_A 74 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD 143 (205)
T ss_dssp SEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGG
T ss_pred EEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechh
Confidence 46789999999999987766667789999999999986543 11222 2678888889988
No 160
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.68 E-value=7.3e-09 Score=109.12 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=43.1
Q ss_pred ceEEEEEcCCCCc-------------ccHHHHHHHHHhhcceE-EEEecchhHH-----HHHH---HhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHV-------------DFSSEVTAALRITDGAL-VVVDCIEGVC-----MYAS---KFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~-------------df~~e~~~~l~~~D~av-lvvda~~Gv~-----~~~~---~~~~p~~~~inkld 154 (752)
...++|+||||+. .|...+...++.+|.+| +|+|+..+.. .+++ ..++|.++++||+|
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~D 203 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 203 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccc
Confidence 4689999999964 24445666777888777 6899987654 2333 35789999999999
No 161
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.68 E-value=7e-09 Score=104.87 Aligned_cols=106 Identities=15% Similarity=0.094 Sum_probs=66.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+..+|+++|..++|||||+++|+...- ...+ ..+.|.......+.+ +
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~----------~~~~------~~~~t~~~~~~~~~~----------------~ 74 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANV----------DVQS------YSFTTKNLYVGHFDH----------------K 74 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCE----------EEEC------C-----CEEEEEEEE----------------T
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC----------ccCC------CCCcceeeeeeeeec----------------C
Confidence 4568999999999999999999953210 0001 012233322222233 2
Q ss_pred ceEEEEEcCCCCccc------H---HHHHHHHHhhcceEEEEecchhHH----------HHHHHh--CCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDF------S---SEVTAALRITDGALVVVDCIEGVC----------MYASKF--GVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df------~---~e~~~~l~~~D~avlvvda~~Gv~----------~~~~~~--~~p~~~~inkld 154 (752)
...+.|+||||+.++ . ..+......+|++|+|+|+..... ..+... ++|.++++||+|
T Consensus 75 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~D 153 (228)
T 2qu8_A 75 LNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKID 153 (228)
T ss_dssp TEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGG
T ss_pred CCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcc
Confidence 578999999999432 1 122333567899999999986521 222333 789999999998
No 162
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.60 E-value=8.8e-09 Score=115.60 Aligned_cols=105 Identities=16% Similarity=0.207 Sum_probs=75.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
-+|+|+|.+|+|||||+++|+.....+..... |.|.+.....+.+. +..
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~---------------gTT~d~~~~~i~~~----------------g~~ 292 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIP---------------GTTRDVISEEIVIR----------------GIL 292 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSS---------------CCSSCSCCEEEEET----------------TEE
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCC---------------CeeeeeEEEEEecC----------------CeE
Confidence 47999999999999999999876533222112 34555544455553 678
Q ss_pred EEEEcCCCCc-ccH--------HHHHHHHHhhcceEEEEecchhHH----HHHHH-hCCCHHHHHHHhhC
Q 004467 100 INLIDSPGHV-DFS--------SEVTAALRITDGALVVVDCIEGVC----MYASK-FGVDESKMMERLWG 155 (752)
Q Consensus 100 inliDtPGh~-df~--------~e~~~~l~~~D~avlvvda~~Gv~----~~~~~-~~~p~~~~inkldg 155 (752)
++|+||||+. ++. ......++.+|++|+|+|+..+.. .+.+. .++|.++++||+|-
T Consensus 293 ~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL 362 (482)
T 1xzp_A 293 FRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDV 362 (482)
T ss_dssp EEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSS
T ss_pred EEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECccc
Confidence 9999999998 654 234567889999999999987632 11111 37899999999994
No 163
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.59 E-value=1.2e-08 Score=115.87 Aligned_cols=103 Identities=16% Similarity=0.088 Sum_probs=75.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+..+|+++|..++|||||+++|+...-. . . --|+......+.+ +
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~--~----------~-------~~T~~~~~~~~~~----------------~ 364 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV--T----------T-------IPTVGFNVETVTY----------------K 364 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC--C----------C-------CCCSSEEEEEEES----------------S
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC--C----------c-------CCccceeEEEEEe----------------C
Confidence 34578999999999999999999754311 0 0 0133333333444 3
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHHH-------hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYASK-------FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~~-------~~~p~~~~inkld 154 (752)
++.++|+||||+.+|.......++.+|++|+|+|++.... .+... .++|++++.||+|
T Consensus 365 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 434 (497)
T 3lvq_E 365 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 434 (497)
T ss_dssp SCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCS
T ss_pred CEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCC
Confidence 6899999999999998888888999999999999997632 12111 3788899999998
No 164
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.58 E-value=1.8e-08 Score=100.91 Aligned_cols=105 Identities=11% Similarity=0.052 Sum_probs=70.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccce-EEEEEeeccchhccccCCCCCC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~-~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
...+|+++|..++|||||+++|+...-.... .. |+.... ..+.+ ++.
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~--~~----------------t~~~~~~~~~~~--------------~~~ 73 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETY--VP----------------TVFENYTACLET--------------EEQ 73 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCSSC--CC----------------CSEEEEEEEEEC----------------C
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCc--CC----------------eeeeeEEEEEEE--------------CCE
Confidence 3568999999999999999999753211000 00 111110 01111 224
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHHHh--CCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYASKF--GVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~~~--~~p~~~~inkld 154 (752)
.+.++|+||||+.+|.......++.+|++|+|+|++.... ..+... ++|++++.||+|
T Consensus 74 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 142 (214)
T 3q3j_B 74 RVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTD 142 (214)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGG
T ss_pred EEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChh
Confidence 6789999999999998777777889999999999987643 222222 788888889988
No 165
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.56 E-value=3.1e-08 Score=105.71 Aligned_cols=106 Identities=16% Similarity=0.114 Sum_probs=72.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccc-eEEEEEeeccchhccccCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~-~~~~~~~~~~~~~~~~~~~~~~ 95 (752)
....+|+++|..++|||||+++|....- .....+ |+... ...+.. ++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~----------------t~~~~~~~~~~~--------------~~ 200 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIP----------------TVFDNYSANVMV--------------DG 200 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCC----------------CSEEEEEEEEEE--------------TT
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCC--CcccCC----------------cccceeEEEEEE--------------CC
Confidence 4567899999999999999999964321 110011 11110 111111 22
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---------HHHHHh--CCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---------MYASKF--GVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---------~~~~~~--~~p~~~~inkld 154 (752)
..+.++|+||||+.+|.......++.+|++++|+|++.... ..+... ++|.+++.||+|
T Consensus 201 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 270 (332)
T 2wkq_A 201 KPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270 (332)
T ss_dssp EEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHH
T ss_pred EEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchh
Confidence 35678899999999998777778889999999999988654 122233 788888899998
No 166
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.56 E-value=4.6e-08 Score=96.34 Aligned_cols=108 Identities=15% Similarity=0.062 Sum_probs=69.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.....|+++|..++|||||+++|....+.... ..+++.......+.+. +.
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~--------------~~ 70 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAH----------------EPENPEDTYERRIMVD--------------KE 70 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGG----------------TTTSCTTEEEEEEEET--------------TE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccC----------------CCCcccceEEEEEEEC--------------CE
Confidence 45679999999999999999998322111100 0112222222222232 23
Q ss_pred ceEEEEEcCCCCcccHHH-HHHHHHhhcceEEEEecchhHH-----HHHH---H----hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSE-VTAALRITDGALVVVDCIEGVC-----MYAS---K----FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e-~~~~l~~~D~avlvvda~~Gv~-----~~~~---~----~~~p~~~~inkld 154 (752)
.+.+.+.||||+.+|... ....++.+|++|+|+|++.... .+.. . .++|.+++.||+|
T Consensus 71 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 141 (195)
T 3cbq_A 71 EVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSD 141 (195)
T ss_dssp EEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTT
T ss_pred EEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechh
Confidence 567889999999887653 3345678999999999986432 2221 1 3788888889988
No 167
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.56 E-value=5.7e-08 Score=94.69 Aligned_cols=101 Identities=14% Similarity=0.156 Sum_probs=67.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.+.-+|+++|..++|||||+++|+...- .. ++.+ |...-...+.+. +.
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~--~~---------~~~~-------t~~~~~~~~~~~--------------~~ 65 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTY--VQ---------EESP-------EGGRFKKEIVVD--------------GQ 65 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSC--CC---------CCCT-------TCEEEEEEEEET--------------TE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCC--CC---------CcCC-------CcceEEEEEEEC--------------CE
Confidence 4456899999999999999999974321 10 0000 110001122222 23
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHH---HH----hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYA---SK----FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~---~~----~~~p~~~~inkld 154 (752)
.+.++|+||||+.+|. .++.+|++++|+|++.... .+. .. .++|++++.||+|
T Consensus 66 ~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 130 (184)
T 3ihw_A 66 SYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDA 130 (184)
T ss_dssp EEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTT
T ss_pred EEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 5788999999999986 7788999999999997643 221 12 3578888889888
No 168
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.55 E-value=7.4e-09 Score=116.34 Aligned_cols=131 Identities=17% Similarity=0.170 Sum_probs=73.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC-cccc--C--------C-chhHhHhcceeccceEEEEEeeccc
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-VRMT--D--------T-RADEAERGITIKSTGISLYYEMTDD 84 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~-~~~~--D--------~-~~~E~eRgiTi~s~~~~~~~~~~~~ 84 (752)
.+.++|+|+|+.|+|||||+.+|.+.... .|. +.+. | + .......|+++...... .++..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~-----~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~---~dp~~ 170 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQR-----KGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTE---MDPVI 170 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHH-----TTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCC---SCHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh-----CCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCC---CCHHH
Confidence 34789999999999999999999866431 121 1111 1 1 11223445553221100 00000
Q ss_pred hhc-cccCCCCCCceEEEEEcCCCCc----ccHHHHHHHHH--hhcceEEEEecchhHH--HHHHHhC--CCH-HHHHHH
Q 004467 85 ALK-SYKGERNGNEYLINLIDSPGHV----DFSSEVTAALR--ITDGALVVVDCIEGVC--MYASKFG--VDE-SKMMER 152 (752)
Q Consensus 85 ~~~-~~~~~~~~~~~~inliDtPGh~----df~~e~~~~l~--~~D~avlvvda~~Gv~--~~~~~~~--~p~-~~~ink 152 (752)
.+. .+. .....++.++||||||+. ++..++....+ .+|.+++||||..|.. .++..++ +|+ .+++||
T Consensus 171 i~~~al~-~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~~~~i~gvVlNK 249 (504)
T 2j37_W 171 IASEGVE-KFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTK 249 (504)
T ss_dssp HHHHHHH-HHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHHHHCCCCEEEEC
T ss_pred HHHHHHH-HHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHhhcCceEEEEeC
Confidence 000 000 001136789999999976 45555544433 6899999999998854 3333333 664 677899
Q ss_pred hhCC
Q 004467 153 LWGE 156 (752)
Q Consensus 153 ldg~ 156 (752)
+|+.
T Consensus 250 ~D~~ 253 (504)
T 2j37_W 250 LDGH 253 (504)
T ss_dssp TTSC
T ss_pred Cccc
Confidence 9843
No 169
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.54 E-value=5.1e-08 Score=93.89 Aligned_cols=99 Identities=14% Similarity=0.089 Sum_probs=66.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccce-EEEEEeeccchhccccCCCCCC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~-~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
+.-+|+++|..++|||||+++|+...-. . +. -|+.... ..+.+ ++.
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~--~----------~~-------~t~~~~~~~~~~~--------------~~~ 52 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQ--V----------LE-------KTESEQYKKEMLV--------------DGQ 52 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCC--C----------CS-------SCSSSEEEEEEEE--------------TTE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC--C----------cC-------CCcceeEEEEEEE--------------CCE
Confidence 4568999999999999999999753211 0 00 0111111 11122 123
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----H---HHHH------hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----M---YASK------FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~---~~~~------~~~p~~~~inkld 154 (752)
.+.+++.||||+..+ ..++.+|++++|+|++.... . +... .++|.+++.||+|
T Consensus 53 ~~~l~i~Dt~G~~~~-----~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~D 119 (178)
T 2iwr_A 53 THLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 119 (178)
T ss_dssp EEEEEEEECSSSCCH-----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTT
T ss_pred EEEEEEEECCCCchh-----HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 578999999999873 46788999999999987644 2 2332 2678888889988
No 170
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.50 E-value=4.8e-08 Score=94.94 Aligned_cols=99 Identities=21% Similarity=0.278 Sum_probs=60.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
.+|+++|+.++|||||+++|+... .. .+ ...|+|.... .+.+ . .
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~--~~---~~-----------~~~~~t~~~~--~~~~-----------------~-~ 45 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK--VR---RG-----------KRPGVTRKII--EIEW-----------------K-N 45 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC--CS---SS-----------SSTTCTTSCE--EEEE-----------------T-T
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC--Cc---cC-----------CCCCccceeE--EEec-----------------C-C
Confidence 479999999999999999996321 10 00 0114444322 2222 1 6
Q ss_pred EEEEcCCCC-----------cccHHHHHHH----HHhhcceEEEEecchhHH------------------HHHHHhCCCH
Q 004467 100 INLIDSPGH-----------VDFSSEVTAA----LRITDGALVVVDCIEGVC------------------MYASKFGVDE 146 (752)
Q Consensus 100 inliDtPGh-----------~df~~e~~~~----l~~~D~avlvvda~~Gv~------------------~~~~~~~~p~ 146 (752)
++++||||+ ..|....... +..++.++.|+|+..... ..+...++|.
T Consensus 46 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi 125 (190)
T 2cxx_A 46 HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPT 125 (190)
T ss_dssp EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCce
Confidence 889999995 3344333333 344556667777664321 2334468898
Q ss_pred HHHHHHhh
Q 004467 147 SKMMERLW 154 (752)
Q Consensus 147 ~~~inkld 154 (752)
+++.||+|
T Consensus 126 ilv~nK~D 133 (190)
T 2cxx_A 126 IVAVNKLD 133 (190)
T ss_dssp EEEEECGG
T ss_pred EEEeehHh
Confidence 88889988
No 171
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.49 E-value=1.2e-08 Score=109.94 Aligned_cols=58 Identities=16% Similarity=0.168 Sum_probs=41.2
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---HHHHHhCCCHHHHHHHhhCC
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---MYASKFGVDESKMMERLWGE 156 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---~~~~~~~~p~~~~inkldg~ 156 (752)
+++.++||||||+.++...+ ++.+|++|+|+|+..|.. ......++|.++|+||+|..
T Consensus 147 ~~~~i~liDTpG~~~~~~~~---~~~aD~vl~Vvd~~~~~~~~~l~~~~~~~p~ivv~NK~Dl~ 207 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSETEV---ARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGD 207 (341)
T ss_dssp TTCSEEEEEEECCTTHHHHH---HTTCSEEEEEECC------CCCCHHHHHHCSEEEECCCCTT
T ss_pred cCCCEEEEeCCCccchHHHH---HHhCCEEEEEEeCCccHHHHHHHHhhhcccCEEEEECCCCC
Confidence 36899999999999876553 589999999999987754 00122357888899999954
No 172
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.47 E-value=1e-07 Score=109.06 Aligned_cols=118 Identities=13% Similarity=0.106 Sum_probs=75.0
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~ 95 (752)
+.+..+|+++|..++|||||+++|....- .. ...-|+.....+.... ....+....++
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~--~~----------------~~~~t~g~~~~~~~~~----~~~~v~~~~~~ 95 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETF--DP----------------KESQTHGLNVVTKQAP----NIKGLENDDEL 95 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------------------------CCCEEEEEGG----GSGGGTTCSTT
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCC--CC----------------CCCCccceEEEEeccc----cccceeecCCC
Confidence 44567899999999999999999953210 00 0011221111111000 00001111233
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HHHHHhC--CCHHHHHHHhhC
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MYASKFG--VDESKMMERLWG 155 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~~~~~~--~p~~~~inkldg 155 (752)
+.+.++++||||+..|.......++.+|++|+|+|+..+-. ..+.+++ +|++++.||+|-
T Consensus 96 ~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~pvilV~NK~Dl 162 (535)
T 3dpu_A 96 KECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDE 162 (535)
T ss_dssp TTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGGGGHHHHHHHHHHHSSSCCEEEEECCTTT
T ss_pred ceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCchhHHHHHHHHHHhCCCCCEEEEEECCCc
Confidence 46899999999999998877778889999999999987633 3444544 899999999993
No 173
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.45 E-value=4.1e-08 Score=115.41 Aligned_cols=57 Identities=18% Similarity=0.148 Sum_probs=44.0
Q ss_pred eEEEEEcCCCCcc---cHHHHHHHHHhhcceEEEEecchhHH-----H---HHHHhCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVD---FSSEVTAALRITDGALVVVDCIEGVC-----M---YASKFGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~d---f~~e~~~~l~~~D~avlvvda~~Gv~-----~---~~~~~~~p~~~~inkld 154 (752)
..++|+||||+.+ +...+...++.+|++|+|+|+..+.. . .+...+.|.++++||+|
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~D 241 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWD 241 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcc
Confidence 4699999999765 44556677889999999999987643 1 22345788888999999
No 174
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.43 E-value=3.2e-08 Score=106.28 Aligned_cols=105 Identities=14% Similarity=0.124 Sum_probs=70.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
+..|+++|..++|||||+++|....- .+.|+ ...|+......+.+. +..
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~----------~i~~~------~ftTl~p~~g~v~~~---------------~~~ 206 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKP----------KIADY------HFTTLVPNLGMVETD---------------DGR 206 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECC----------EESST------TSSCCCCCEEEEECS---------------SSC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCC----------ccccC------CccccCceEEEEEeC---------------CCc
Confidence 45799999999999999999842211 11111 123444444344443 136
Q ss_pred EEEEEcCCCCcc-------cHHHHHHHHHhhcceEEEEecch-----hHH------HHHHH-----hCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE-----GVC------MYASK-----FGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~d-------f~~e~~~~l~~~D~avlvvda~~-----Gv~------~~~~~-----~~~p~~~~inkld 154 (752)
.+.|+||||+.+ +..+..+.+..+|++|+|+|++. ... ..+.. .++|.++++||+|
T Consensus 207 ~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~D 285 (342)
T 1lnz_A 207 SFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMD 285 (342)
T ss_dssp EEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTT
T ss_pred eEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECcc
Confidence 899999999643 55667777888999999999964 332 22233 3688888889888
No 175
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.42 E-value=1.6e-07 Score=101.82 Aligned_cols=105 Identities=15% Similarity=0.220 Sum_probs=66.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
.++.|+|+|+.|+|||||+++|....- . . +-.-+.|.+.....+.+. +
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~-~---------~------~~~~~~T~d~~~~~i~~~----------------g 225 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ-K---------V------DTKLFTTMSPKRYAIPIN----------------N 225 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC---------------------------CCSCEEEEEET----------------T
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc-c---------c------cCCcccccCCEEEEEEEC----------------C
Confidence 356799999999999999999952211 0 0 011244555544555554 5
Q ss_pred eEEEEEcCCCCcc-----cH---HHHHHHHHhhcceEEEEecchhH--H--------HHHHHh---CCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVD-----FS---SEVTAALRITDGALVVVDCIEGV--C--------MYASKF---GVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~d-----f~---~e~~~~l~~~D~avlvvda~~Gv--~--------~~~~~~---~~p~~~~inkld 154 (752)
..+.++||||+.+ +. ..+...+..+|.+++|+|+..+. . ..+..+ ++|.+++.||+|
T Consensus 226 ~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~D 303 (364)
T 2qtf_A 226 RKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKID 303 (364)
T ss_dssp EEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGG
T ss_pred EEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCC
Confidence 7899999999732 11 23344567899999999998654 1 233333 567777778877
No 176
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.39 E-value=1.8e-07 Score=101.25 Aligned_cols=106 Identities=20% Similarity=0.181 Sum_probs=67.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.....|+++|+.|+|||||+++|..... . .+ + ..+.|.......+.+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~---~--~~-----~------~~~~t~~~~~~~~~~~---------------- 212 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKP---E--IA-----S------YPFTTRGINVGQFEDG---------------- 212 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCC---E--EE-----C------CTTCSSCEEEEEEEET----------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC---c--cC-----C------CCCeeeceeEEEEEec----------------
Confidence 3567899999999999999999942210 0 01 0 0123333333333332
Q ss_pred ceEEEEEcCCCCcccHH--------HHHHHHH-hhcceEEEEecchhH----H-------HHHHHh-CCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSS--------EVTAALR-ITDGALVVVDCIEGV----C-------MYASKF-GVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~--------e~~~~l~-~~D~avlvvda~~Gv----~-------~~~~~~-~~p~~~~inkld 154 (752)
+..+.++||||+.++.. ....++. .+|++++|+|+..+- . ...... ++|.+++.||+|
T Consensus 213 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~D 291 (357)
T 2e87_A 213 YFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKID 291 (357)
T ss_dssp TEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTT
T ss_pred CceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence 57899999999876531 2233333 589999999987532 2 122223 788888899988
No 177
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.36 E-value=1.6e-07 Score=101.60 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=72.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
-.|||+|.+++|||||.++|...... +.|+ -+.|++.....+.+. +.+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~----------v~~~------pftT~~~~~g~~~~~----------------~~~ 120 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESE----------AAEY------EFTTLVTVPGVIRYK----------------GAK 120 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCC----------GGGT------CSSCCCEEEEEEEET----------------TEE
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCc----------ccCC------CCceeeeeeEEEEeC----------------CcE
Confidence 47999999999999999999532211 1111 145666665556665 789
Q ss_pred EEEEcCCCCcc-------cHHHHHHHHHhhcceEEEEecchhHH------HHHHHh-----CCCHHHHHHHhh
Q 004467 100 INLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVC------MYASKF-----GVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~d-------f~~e~~~~l~~~D~avlvvda~~Gv~------~~~~~~-----~~p~~~~inkld 154 (752)
|.|+||||..+ ...++...++.||..++|||+.+.+. .-+..+ ..|.++++||.|
T Consensus 121 i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d 193 (376)
T 4a9a_A 121 IQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKE 193 (376)
T ss_dssp EEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECS
T ss_pred EEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhh
Confidence 99999999654 33567888999999999999998765 112222 345566667766
No 178
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.36 E-value=1.3e-07 Score=93.27 Aligned_cols=89 Identities=19% Similarity=0.223 Sum_probs=58.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
....|+++|+.|+|||||+++|....-.... . ..+++......+.+. +..
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~---~-------------~t~~~~~~~~~i~~~--------------g~~ 53 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLES---K-------------STIGVEFATRSIQVD--------------GKT 53 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-------------------CCCSCEEEEEEEEET--------------TEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCC---C-------------CccceeEEEEEEEEC--------------CEE
Confidence 3578999999999999999999643211100 0 001111111223332 234
Q ss_pred eEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH
Q 004467 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~ 136 (752)
..+.+.||||+..|........+.+|++++|+|......
T Consensus 54 ~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s 92 (199)
T 2f9l_A 54 IKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLT 92 (199)
T ss_dssp EEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHH
T ss_pred EEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHH
Confidence 678899999999887656666778999999999987643
No 179
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.36 E-value=1.9e-07 Score=101.30 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=43.5
Q ss_pred ceEEEEEcCCCCccc-------------HHHHHHHHHhhcceEEEEecch-h-H----HHHHH---HhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDF-------------SSEVTAALRITDGALVVVDCIE-G-V----CMYAS---KFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df-------------~~e~~~~l~~~D~avlvvda~~-G-v----~~~~~---~~~~p~~~~inkld 154 (752)
...++|+||||..++ ..-+...++.+|++|+|+|+.. . . ..+++ ..+.|.++++||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 457999999998887 4456667789999999998742 1 1 13333 35788999999999
No 180
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.32 E-value=1.4e-07 Score=102.10 Aligned_cols=59 Identities=15% Similarity=0.075 Sum_probs=38.6
Q ss_pred ceEEEEEcCCCCcc------------cHH-HHHHHHHh-hcceEEEEecchhHH-----HHHHH---hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVD------------FSS-EVTAALRI-TDGALVVVDCIEGVC-----MYASK---FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~d------------f~~-e~~~~l~~-~D~avlvvda~~Gv~-----~~~~~---~~~p~~~~inkld 154 (752)
...++|+||||..+ ... -+...++. .|.+++|+|+..++. .+++. .+.|.++|+||+|
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~D 208 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLD 208 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGG
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEecccc
Confidence 46899999999643 222 23344444 456666788876654 23443 4788999999999
Q ss_pred C
Q 004467 155 G 155 (752)
Q Consensus 155 g 155 (752)
.
T Consensus 209 l 209 (353)
T 2x2e_A 209 L 209 (353)
T ss_dssp G
T ss_pred c
Confidence 3
No 181
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.30 E-value=1.6e-07 Score=91.29 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=63.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceE
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (752)
..|+++|..++|||||+++|....... .+. .. -|+........+.. ...+++.+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~----~~~----------~~--~t~g~~~~~~~~~~---------~~~~~~~~~ 57 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSD----LGM----------QS--ATVGIDVKDWPIQI---------RDKRKRDLV 57 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC---------------------------CSEEEEEEEC------------------CE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCcc----CCC----------cc--eeccEEeEEeeecc---------ccCCCCceE
Confidence 368999999999999999994211000 000 00 11111111111100 000123678
Q ss_pred EEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH------HHHH---H--hCCCHHHHHHHhh
Q 004467 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC------MYAS---K--FGVDESKMMERLW 154 (752)
Q Consensus 100 inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~------~~~~---~--~~~p~~~~inkld 154 (752)
+.+.||||+..|..-....++.+|++++|+|.+.+.. .+.. . .++|++++.||+|
T Consensus 58 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~D 123 (184)
T 2zej_A 58 LNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLD 123 (184)
T ss_dssp EEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGG
T ss_pred EEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCC
Confidence 9999999988877655666788999999999988742 1211 1 2677777778888
No 182
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.29 E-value=4.5e-08 Score=106.01 Aligned_cols=58 Identities=14% Similarity=0.157 Sum_probs=41.3
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHHH-H--HHHhCCCHHHHHHHhhCC
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCM-Y--ASKFGVDESKMMERLWGE 156 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~~-~--~~~~~~p~~~~inkldg~ 156 (752)
.++.+.||||||... .....+..+|.+|+|+|+..+... . ...+.+|.++++||+|..
T Consensus 170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~~~~~p~ivVlNK~Dl~ 230 (355)
T 3p32_A 170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGE 230 (355)
T ss_dssp TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTTSGGGCSEEEEECCCGG
T ss_pred CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHhHhhcCCEEEEECCCCc
Confidence 468899999999544 233345899999999999876541 0 111346888999999943
No 183
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.28 E-value=7.9e-08 Score=104.23 Aligned_cols=116 Identities=18% Similarity=0.221 Sum_probs=52.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
..-+|+++|+.|+|||||+++|+.. +... . ...+....+..+++++......+.+. +..
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~-~~~~---~---~~~~~~~~~~~~ti~~~~~~~~~~~~--------------~~~ 94 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLT-DLYP---E---RVIPGAAEKIERTVQIEASTVEIEER--------------GVK 94 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTC-CC---------------------CEEEEEEEEC------------------CEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCC-CCCC---C---CcccCCCcccCCceeEEEEEEEeecC--------------Ccc
Confidence 3468999999999999999998422 1111 0 11222223333344443222222221 123
Q ss_pred eEEEEEcCCCCcccHHHHH--------------HHHHhh-------------cceEEEEec-chhHH----HHHHH--hC
Q 004467 98 YLINLIDSPGHVDFSSEVT--------------AALRIT-------------DGALVVVDC-IEGVC----MYASK--FG 143 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~--------------~~l~~~-------------D~avlvvda-~~Gv~----~~~~~--~~ 143 (752)
..++++||||+.|+..+.. ..++.+ |+++++|+. ..+.. .+.+. .+
T Consensus 95 ~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~~~ 174 (361)
T 2qag_A 95 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNK 174 (361)
T ss_dssp EEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTCS-
T ss_pred cceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhccC
Confidence 5799999999966543211 333333 347777776 34433 22332 35
Q ss_pred CCHHHHHHHhh
Q 004467 144 VDESKMMERLW 154 (752)
Q Consensus 144 ~p~~~~inkld 154 (752)
+|+++|+||+|
T Consensus 175 ~piIlV~NK~D 185 (361)
T 2qag_A 175 VNIVPVIAKAD 185 (361)
T ss_dssp SCEEEEEECCS
T ss_pred CCEEEEEECCC
Confidence 88888889888
No 184
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.26 E-value=8.5e-08 Score=96.07 Aligned_cols=129 Identities=14% Similarity=0.171 Sum_probs=68.8
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCCcc-----ccCCCccccCCchhHhHh-cceeccceEEEEEeeccchhc-c
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ-----EVAGDVRMTDTRADEAER-GITIKSTGISLYYEMTDDALK-S 88 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~-----~~~g~~~~~D~~~~E~eR-giTi~s~~~~~~~~~~~~~~~-~ 88 (752)
..++++|+++|+.|+|||||+++|+.......+ .+.+. ..| ..+.++ |+++..-.....+......+. .
T Consensus 27 ~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~--~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (221)
T 2wsm_A 27 ESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVS--KAD--YERVRRFGIKAEAISTGKECHLDAHMIYHR 102 (221)
T ss_dssp HHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCC--HHH--HHHHHTTTCEEEECCCTTCSSCCHHHHHTT
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCC--chh--HHHHHhCCCcEEEecCCceeecccHHHHHH
Confidence 357899999999999999999999987532211 01110 111 112222 443211000000000000000 0
Q ss_pred ccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---HHHHHhCCCHHHHHHHhh
Q 004467 89 YKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---MYASKFGVDESKMMERLW 154 (752)
Q Consensus 89 ~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---~~~~~~~~p~~~~inkld 154 (752)
+. ...++.+.++||||..+--... -...+.+++|+|+..|.. .+....++|.++++||+|
T Consensus 103 ~~---~~~~~d~iiidt~G~~~~~~~~---~~~~~~~i~vvd~~~~~~~~~~~~~~~~~~~iiv~NK~D 165 (221)
T 2wsm_A 103 LK---KFSDCDLLLIENVGNLICPVDF---DLGENYRVVMVSVTEGDDVVEKHPEIFRVADLIVINKVA 165 (221)
T ss_dssp GG---GGTTCSEEEEEEEEBSSGGGGC---CCSCSEEEEEEEGGGCTTHHHHCHHHHHTCSEEEEECGG
T ss_pred HH---hcCCCCEEEEeCCCCCCCCchh---ccccCcEEEEEeCCCcchhhhhhhhhhhcCCEEEEeccc
Confidence 00 2235788999998831110000 013578999999998754 333456788888899988
No 185
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.25 E-value=3e-07 Score=91.08 Aligned_cols=105 Identities=13% Similarity=0.103 Sum_probs=60.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
..-..|+++|+.|+|||||+++|+ |... ... .....|.|.... .+.+.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~---g~~~--------~~~---~~~~~G~~~~~~--~~~~~---------------- 71 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLT---NQKS--------LAR---TSKTPGRTQLIN--LFEVA---------------- 71 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTC---CC------------------------CCEE--EEEEE----------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHh---CCCc--------ccc---ccCCCccceeeE--EEEec----------------
Confidence 345689999999999999999983 2110 000 001123333211 12232
Q ss_pred ceEEEEEcCCCCccc----------HHH---HHHHHHhhcceEEEEecchhHH-------HHHHHhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDF----------SSE---VTAALRITDGALVVVDCIEGVC-------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df----------~~e---~~~~l~~~D~avlvvda~~Gv~-------~~~~~~~~p~~~~inkld 154 (752)
+ .+.++||||+.++ ... +....+.+|++++|+|+..+.. .++...++|.+++.||+|
T Consensus 72 ~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D 148 (210)
T 1pui_A 72 D-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKAD 148 (210)
T ss_dssp T-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred C-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEeccc
Confidence 2 5789999998542 222 2222357899999999987532 445567788777778777
No 186
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.22 E-value=7.3e-07 Score=89.39 Aligned_cols=107 Identities=16% Similarity=0.099 Sum_probs=69.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
+.-.|+++|..++|||||+.+++... ... + .--|+.......... .++..
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~--f~~--------------~--~~~Tig~d~~~k~~~------------~~~~~ 61 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDS--FDN--------------T--YQATIGIDFLSKTMY------------LEDRT 61 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSC--CC--------------------------CEEEEEE------------CSSCE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCC--CCC--------------C--cCCccceEEEEEEEE------------ecceE
Confidence 33469999999999999999996421 110 0 001222222221221 12346
Q ss_pred eEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH-----HH---H---HHhCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----MY---A---SKFGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~-----~~---~---~~~~~p~~~~inkld 154 (752)
+.++|.||+|...|..-...-.+.+|++++|.|.+.--. .+ + ...++|.+++.||.|
T Consensus 62 v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~D 129 (216)
T 4dkx_A 62 IRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD 129 (216)
T ss_dssp EEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTT
T ss_pred EEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccc
Confidence 789999999999998888888999999999999887543 11 1 123577777778887
No 187
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=98.15 E-value=3.4e-06 Score=83.59 Aligned_cols=84 Identities=17% Similarity=0.279 Sum_probs=64.3
Q ss_pred CCCCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCE
Q 004467 281 PNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNT 360 (752)
Q Consensus 281 ~~~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdI 360 (752)
.++||.+.|..+|. +.|+ +..|||.+|++++||+|.++|.+ . ..+|.+|+. ...++++|.|||+
T Consensus 3 ~~~p~rl~v~~v~~--g~G~-v~~G~v~~G~i~~Gd~v~i~P~~----~-----~~~V~~I~~----~~~~~~~A~aGd~ 66 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGT-VVLGKLESGSICKGQQLVMMPNK----H-----NVEVLGILS----DDVETDTVAPGEN 66 (204)
T ss_dssp ----CBEEEEEEEE--SSSE-EEEEECCBSCEESSCCEEETTTT----E-----EEEEEEECS----SSSCBSEECTTSE
T ss_pred CCCCEEEEEEEEEc--CCCE-EEEEEEecCEEECCCEEEECCCC----C-----EEEEEEEEE----CCEEeEEECCCCE
Confidence 46899999999987 5676 89999999999999999998643 1 257777663 3467999999999
Q ss_pred EEE--eccccccccce-eeccCC
Q 004467 361 VAM--VGLDQFITKNA-TLTNEK 380 (752)
Q Consensus 361 vai--~Gl~~~~~~tg-TL~~~~ 380 (752)
+++ .|++...+..| +|++++
T Consensus 67 V~l~L~gi~~~di~rG~vl~~~~ 89 (204)
T 3e1y_E 67 LKIRLKGIEEEEILPGFILCDPN 89 (204)
T ss_dssp EEEEEEESSSSCCCTTCEEBCSS
T ss_pred EEEEEcCCCHHHCccceEEECCC
Confidence 998 68776555777 888765
No 188
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.14 E-value=2.5e-06 Score=91.72 Aligned_cols=99 Identities=25% Similarity=0.189 Sum_probs=57.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeecc-chhccccCCCCCCce
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD-DALKSYKGERNGNEY 98 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~-~~~~~~~~~~~~~~~ 98 (752)
.+|+|+|++++|||||+++|....-.+.. .. +.|+......+.+.... ..+.......+....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~-~p---------------~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~ 66 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAAN-YP---------------FCTIEPNTGVVPMPDPRLDALAEIVKPERILPT 66 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------C---------------CCCCCCCSSEEECCCHHHHHHHHHHCCSEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccC-CC---------------CceECceEEEEecCCcccceeeeeecccceeee
Confidence 36999999999999999999754311100 01 12333222223332100 000000000000135
Q ss_pred EEEEEcCCCCcccHH-------HHHHHHHhhcceEEEEecchh
Q 004467 99 LINLIDSPGHVDFSS-------EVTAALRITDGALVVVDCIEG 134 (752)
Q Consensus 99 ~inliDtPGh~df~~-------e~~~~l~~~D~avlvvda~~G 134 (752)
.++|+||||...+.. .....++.+|++++|+|+.+.
T Consensus 67 ~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~~ 109 (363)
T 1jal_A 67 TMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFEN 109 (363)
T ss_dssp EEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSCC
T ss_pred EEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCCC
Confidence 799999999988753 345678999999999999985
No 189
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.13 E-value=8.9e-07 Score=86.67 Aligned_cols=89 Identities=19% Similarity=0.220 Sum_probs=58.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
+....|+++|+.|+|||||+++|....-.... . ..++.......+.+. +.
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~---~-------------~t~~~~~~~~~i~~~--------------g~ 76 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES---K-------------STIGVEFATRSIQVD--------------GK 76 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSC---C-------------CCCSEEEEEEEEEET--------------TE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCC---C-------------CccceEEEEEEEEEC--------------CE
Confidence 44678999999999999999999643211100 0 001111111222332 23
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhH
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv 135 (752)
...+.+.||||+..|..-+....+.+|++++|+|.....
T Consensus 77 ~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 115 (191)
T 1oix_A 77 TIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHL 115 (191)
T ss_dssp EEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHH
T ss_pred EEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHH
Confidence 456778999999888776677778899999999988653
No 190
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.10 E-value=2.2e-06 Score=83.95 Aligned_cols=108 Identities=13% Similarity=0.100 Sum_probs=63.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
....|+++|..++|||||+++|+.....+..... .++.+.....+.+. +..
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~--------------~~~ 55 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE---------------VLGEDTYERTLMVD--------------GES 55 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----G---------------GGCTTEEEEEEEET--------------TEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCcccc---------------ccceeEEEEEEEEC--------------CeE
Confidence 4567999999999999999999754432221000 11111111122232 234
Q ss_pred eEEEEEcCCCCccc-HHHHHHHHHhhcceEEEEecchhHH--------HHHHH----hCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDF-SSEVTAALRITDGALVVVDCIEGVC--------MYASK----FGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df-~~e~~~~l~~~D~avlvvda~~Gv~--------~~~~~----~~~p~~~~inkld 154 (752)
..+.++||+|...+ ..-.....+.+|++++|+|.+.--. ..+.. .++|.+++.||+|
T Consensus 56 ~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~D 125 (192)
T 2cjw_A 56 ATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125 (192)
T ss_dssp EEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTT
T ss_pred EEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechh
Confidence 67789999997552 1111224567999999999975322 11222 2688888889888
No 191
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.07 E-value=1.4e-06 Score=101.88 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=41.3
Q ss_pred ceEEEEEcCCCCcc-------------cHHHHHHHH-HhhcceEEEEecchhHH--------HHHHHhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVD-------------FSSEVTAAL-RITDGALVVVDCIEGVC--------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~d-------------f~~e~~~~l-~~~D~avlvvda~~Gv~--------~~~~~~~~p~~~~inkld 154 (752)
...++|+||||... +..-+...+ ..+|.+++||||..+.. ..+...+.|+++++||+|
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiD 228 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 228 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTT
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcc
Confidence 45799999999543 112233333 47899999999997643 333456789999999999
No 192
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.05 E-value=1.7e-06 Score=86.40 Aligned_cols=109 Identities=15% Similarity=0.130 Sum_probs=64.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~ 96 (752)
.....|+++|..++|||||+++++.....+.. +. . .++.+.....+.+. +.
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~---------~~-----~-~~g~d~~~~~i~~~--------------~~ 85 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDS---------DC-----E-VLGEDTYERTLMVD--------------GE 85 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCC---------C---------CCTTEEEEEEEET--------------TE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCC---------cC-----C-ccceeeEEEEEEEC--------------Ce
Confidence 34568999999999999999999632221111 00 0 01111111112222 23
Q ss_pred ceEEEEEcCCCCcccHHHHHH-HHHhhcceEEEEecchhHH-----HH---HHH----hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTA-ALRITDGALVVVDCIEGVC-----MY---ASK----FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~-~l~~~D~avlvvda~~Gv~-----~~---~~~----~~~p~~~~inkld 154 (752)
.+.+.++||+|...+...+.. ..+.+|++|+|+|.+.--. .+ +.. .++|++++.||+|
T Consensus 86 ~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~D 156 (211)
T 2g3y_A 86 SATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 156 (211)
T ss_dssp EEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTT
T ss_pred eeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChH
Confidence 567889999998763222221 2356899999999875321 11 221 3688888889988
No 193
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.03 E-value=2.3e-06 Score=93.67 Aligned_cols=98 Identities=19% Similarity=0.161 Sum_probs=47.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEe--eccchhcccc-C----CC
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE--MTDDALKSYK-G----ER 93 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~--~~~~~~~~~~-~----~~ 93 (752)
+|+|+|++++|||||+++|.... .... ++ -+.|+........+. .+...+...- . ..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~~~~---------~~------p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~ 65 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-VEIA---------NY------PFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYR 65 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC------------------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-Cccc---------CC------CCcccCCceEEEeeccCCchHHhhhhccccccccc
Confidence 68999999999999999996433 1110 00 012333222211111 0000000000 0 00
Q ss_pred C-CCceEEEEEcCCCCcccHH-------HHHHHHHhhcceEEEEecchh
Q 004467 94 N-GNEYLINLIDSPGHVDFSS-------EVTAALRITDGALVVVDCIEG 134 (752)
Q Consensus 94 ~-~~~~~inliDtPGh~df~~-------e~~~~l~~~D~avlvvda~~G 134 (752)
+ .+...++|+||||+.++.. +....++.+|++++|+|+..+
T Consensus 66 ~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 66 NGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp TTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 0 1136799999999876432 222446899999999999876
No 194
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.98 E-value=1.6e-05 Score=86.01 Aligned_cols=98 Identities=20% Similarity=0.205 Sum_probs=58.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccc---cCCCC--
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSY---KGERN-- 94 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~---~~~~~-- 94 (752)
.+|+|+|++++|||||+++|....-.+... . +.|+........+. +..+... -...+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~-p---------------~~Ti~pn~g~~~v~--~~~l~~~~~~~~~~~~~ 63 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANY-P---------------FATIDKNVGVVPLE--DERLYALQRTFAKGERV 63 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSC-C---------------GGGGSTTEEEEECC--CHHHHHHHHHHCBTTBC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCC-C---------------CceeccceeeEecC--hHHHHHHHHHhcccccc
Confidence 468999999999999999997653111110 0 11333322222211 0000000 00000
Q ss_pred --CCceEEEEEcCCCCccc-------HHHHHHHHHhhcceEEEEecchhH
Q 004467 95 --GNEYLINLIDSPGHVDF-------SSEVTAALRITDGALVVVDCIEGV 135 (752)
Q Consensus 95 --~~~~~inliDtPGh~df-------~~e~~~~l~~~D~avlvvda~~Gv 135 (752)
.....++|+||||...+ .......++.+|++++|+|+.+.-
T Consensus 64 ~~~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~ 113 (368)
T 2dby_A 64 PPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDP 113 (368)
T ss_dssp CCEECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH
T ss_pred cccCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCCCC
Confidence 02468999999998775 245677889999999999999863
No 195
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.95 E-value=2.2e-06 Score=92.42 Aligned_cols=58 Identities=16% Similarity=0.123 Sum_probs=36.9
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHHHH-H--HHhCCCHHHHHHHhhCC
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCMY-A--SKFGVDESKMMERLWGE 156 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~~~-~--~~~~~p~~~~inkldg~ 156 (752)
.++.+.|+||||..+-. ......+|.+++|+|+..|.... . .-+..|.++++||+|..
T Consensus 165 ~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~~~il~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 165 AGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVTKSDGD 225 (349)
T ss_dssp TTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC------------CCSCSEEEECCCSGG
T ss_pred CCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhHHHHHhcCCEEEEeeecCC
Confidence 36789999999964332 22357899999999998775411 1 12467888888999943
No 196
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.92 E-value=9.8e-06 Score=88.00 Aligned_cols=107 Identities=18% Similarity=0.166 Sum_probs=52.9
Q ss_pred hhcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeecc-chhcccc
Q 004467 12 IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD-DALKSYK 90 (752)
Q Consensus 12 ~~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~-~~~~~~~ 90 (752)
++.....-..|+|+|.+++|||||+++|....- . .. -.-+.|+......+.+.... ..+....
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~----~~-----------~~p~tTi~p~~g~v~v~~~r~~~l~~~~ 78 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQA-S----AE-----------NFPFCTIDPNESRVPVPDERFDFLCQYH 78 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-----------------------------CCSEEEEECCCHHHHHHHHHH
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCCCc-c----cc-----------CCCccccCceeEEEEECCccceeecccc
Confidence 343444456799999999999999999953211 0 00 01123443333333332100 0000000
Q ss_pred CCCCCCceEEEEEcCCCCcccHH-------HHHHHHHhhcceEEEEecchh
Q 004467 91 GERNGNEYLINLIDSPGHVDFSS-------EVTAALRITDGALVVVDCIEG 134 (752)
Q Consensus 91 ~~~~~~~~~inliDtPGh~df~~-------e~~~~l~~~D~avlvvda~~G 134 (752)
.....-...++|+||||...+.. .....++.+|++++|||+.+.
T Consensus 79 ~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 79 KPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp CCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC---
T ss_pred CcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 00000134699999999887665 467788999999999999753
No 197
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.89 E-value=2.1e-06 Score=88.20 Aligned_cols=57 Identities=16% Similarity=0.130 Sum_probs=38.9
Q ss_pred ceEEEEEcCCCCcccHH------HHHHHHHhhcceEEEEecchhHH------------HHHHHhCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSS------EVTAALRITDGALVVVDCIEGVC------------MYASKFGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~------e~~~~l~~~D~avlvvda~~Gv~------------~~~~~~~~p~~~~inkld 154 (752)
.+.+.||||||..++.. .+..++.. |.+|.|+|+..+.. ......++|.++++||+|
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D 182 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVD 182 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGG
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccc
Confidence 47899999999887642 23345545 78888899875422 112235788888889888
No 198
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.87 E-value=2.6e-06 Score=94.16 Aligned_cols=132 Identities=15% Similarity=0.151 Sum_probs=72.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC-ccccCCch-----------hHhHhcceeccceEEEEEeeccch
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-VRMTDTRA-----------DEAERGITIKSTGISLYYEMTDDA 85 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~-~~~~D~~~-----------~E~eRgiTi~s~~~~~~~~~~~~~ 85 (752)
..++|+++|+.|+||||++..|.+....- -|. +.+.|..+ .....|+.+-.+... .++...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~----~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~---~dp~~i 171 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK----HKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVG---QKPVDI 171 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT----SCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSS---SCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh----cCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCC---CCHHHH
Confidence 46899999999999999999997654311 021 11111111 122344443222100 000000
Q ss_pred hccccCCCCCCceEEEEEcCCCCcccHHHHHHHH------HhhcceEEEEecchhHH--HHHHHhC--CCH-HHHHHHhh
Q 004467 86 LKSYKGERNGNEYLINLIDSPGHVDFSSEVTAAL------RITDGALVVVDCIEGVC--MYASKFG--VDE-SKMMERLW 154 (752)
Q Consensus 86 ~~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l------~~~D~avlvvda~~Gv~--~~~~~~~--~p~-~~~inkld 154 (752)
+..........+|.+.||||||...+..++..++ ..+|.+++|+|+..|.. ..++.++ ++. -+++||+|
T Consensus 172 ~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~~l~i~gvVlnK~D 251 (433)
T 2xxa_A 172 VNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVD 251 (433)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHHHSCCCCEEEECTT
T ss_pred HHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhccCCCeEEEEecCC
Confidence 0000001111367899999999877655555443 35789999999998743 3333332 442 35779999
Q ss_pred CC
Q 004467 155 GE 156 (752)
Q Consensus 155 g~ 156 (752)
+.
T Consensus 252 ~~ 253 (433)
T 2xxa_A 252 GD 253 (433)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 199
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.84 E-value=7.4e-06 Score=90.54 Aligned_cols=132 Identities=16% Similarity=0.152 Sum_probs=70.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcC-------CCccccCCCccccCCchh-HhHhcceeccceEEEEEeeccchh-ccc
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAG-------IIAQEVAGDVRMTDTRAD-EAERGITIKSTGISLYYEMTDDAL-KSY 89 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g-------~i~~~~~g~~~~~D~~~~-E~eRgiTi~s~~~~~~~~~~~~~~-~~~ 89 (752)
.++|+++|+.|+|||||+..|..... .++- +..+....+.+.. -+.-|+.+..... ...++...+ ..+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~-D~~r~~a~~qL~~~~~~~gv~v~~~~~--~~~dp~~i~~~~l 175 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA-DTYRPAAYEQLKQLAEKIHVPIYGDET--RTKSPVDIVKEGM 175 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC-SCCCTTGGGSSHHHHHHSSCCEECCSS--SCCSSSTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec-cccCchHHHHHHHhhhccCcceEecCC--CCCCHHHHHHHHH
Confidence 57999999999999999999976531 0000 0000011111111 0111232211100 000000000 011
Q ss_pred cCCCCCCceEEEEEcCCCCcccHHHHHHHH------HhhcceEEEEecchhHH--HHHHHhC--C-C-HHHHHHHhhCC
Q 004467 90 KGERNGNEYLINLIDSPGHVDFSSEVTAAL------RITDGALVVVDCIEGVC--MYASKFG--V-D-ESKMMERLWGE 156 (752)
Q Consensus 90 ~~~~~~~~~~inliDtPGh~df~~e~~~~l------~~~D~avlvvda~~Gv~--~~~~~~~--~-p-~~~~inkldg~ 156 (752)
.. ..++.+.||||||......+....+ ..+|.+++|+||..|.. ..++.++ + | ..+++||+|+.
T Consensus 176 ~~---~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 176 EK---FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp HT---TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHHHHHHHHHTTSCSCEEEEEECSSSC
T ss_pred HH---hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHHHHHHHHHhhcccCCeEEEEeCCCCc
Confidence 11 1467889999999766544433332 15799999999998854 3344443 5 6 56778999854
No 200
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.75 E-value=5.9e-06 Score=90.92 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=71.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCcccc--CC-ch--hHhH------hcceeccceEEEEEeeccchhc
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMT--DT-RA--DEAE------RGITIKSTGISLYYEMTDDALK 87 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~--D~-~~--~E~e------RgiTi~s~~~~~~~~~~~~~~~ 87 (752)
.+.|+++|+.|+||||++..|..... +. .+++.+. |. ++ .|+- .|+.+..... ...+...+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~---~~-G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~---~~dp~~i~~ 169 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYK---KR-GYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPN---NQNPIEIAK 169 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHH---HT-TCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTT---CSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---Hc-CCeEEEEecCccchhHHHHHHHHHHhcCCceeeccc---cCCHHHHHH
Confidence 57999999999999999999965431 10 1222111 21 11 1111 1222111000 000000000
Q ss_pred cccCCCCCCceEEEEEcCCCCcc------cHHHHHHHHHh--hcceEEEEecchhHH--HHHHHhC---CCHHHHHHHhh
Q 004467 88 SYKGERNGNEYLINLIDSPGHVD------FSSEVTAALRI--TDGALVVVDCIEGVC--MYASKFG---VDESKMMERLW 154 (752)
Q Consensus 88 ~~~~~~~~~~~~inliDtPGh~d------f~~e~~~~l~~--~D~avlvvda~~Gv~--~~~~~~~---~p~~~~inkld 154 (752)
.........++.+.||||||... +..++..-++. .|.+++|+||..|-. .+++.++ -+..+++||+|
T Consensus 170 ~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~~~~~gVIlTKlD 249 (433)
T 3kl4_A 170 KGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQASPIGSVIITKMD 249 (433)
T ss_dssp HHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHHCSSEEEEEECGG
T ss_pred HHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcccCCcEEEEeccc
Confidence 00011122367888999999644 55665554443 499999999998854 4444443 33566789999
Q ss_pred CCC
Q 004467 155 GEN 157 (752)
Q Consensus 155 g~~ 157 (752)
++.
T Consensus 250 ~~a 252 (433)
T 3kl4_A 250 GTA 252 (433)
T ss_dssp GCS
T ss_pred ccc
Confidence 653
No 201
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.75 E-value=7e-06 Score=90.15 Aligned_cols=105 Identities=17% Similarity=0.179 Sum_probs=64.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
...|+++|+.|+|||||+++|. +.... +.|+ ...|+......+.+. ...
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Ls---g~~~~-------i~~~------~ftTl~p~~G~V~~~---------------~~~ 205 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMT---RAHPK-------IAPY------PFTTLSPNLGVVEVS---------------EEE 205 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHC---SSCCE-------ECCC------TTCSSCCEEEEEECS---------------SSC
T ss_pred CCEEEEECCCCCcHHHHHHHHH---cCCcc-------ccCc------ccceecceeeEEEec---------------Ccc
Confidence 3568999999999999999993 22111 1111 012333333233332 136
Q ss_pred EEEEEcCCCCcc-------cHHHHHHHHHhhcceEEEEecc-hhHH----------HHHH-HhCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCI-EGVC----------MYAS-KFGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~d-------f~~e~~~~l~~~D~avlvvda~-~Gv~----------~~~~-~~~~p~~~~inkld 154 (752)
.+++.||||+.+ +.....+.+..+|.++.|+|+. ..+. .++. -.+.|.++++||+|
T Consensus 206 ~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlD 280 (416)
T 1udx_A 206 RFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVD 280 (416)
T ss_dssp EEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCT
T ss_pred eEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCC
Confidence 889999999854 3334455667899999999996 3322 1111 13577777778887
No 202
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.73 E-value=6.8e-05 Score=81.54 Aligned_cols=106 Identities=14% Similarity=0.104 Sum_probs=60.7
Q ss_pred hcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeecc-chhccccC
Q 004467 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD-DALKSYKG 91 (752)
Q Consensus 13 ~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~-~~~~~~~~ 91 (752)
+....+-..++|+|+.|+|||||+++|............ +.|+......+.+.... ..+.....
T Consensus 14 lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p---------------~tTi~p~~G~v~v~~~r~~~l~~~~~ 78 (392)
T 1ni3_A 14 WGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYP---------------YATIDPEEAKVAVPDERFDWLCEAYK 78 (392)
T ss_dssp CSSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCS---------------SCCCCTTEEEEEECCHHHHHHHHHHC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCC---------------ceeecceeeeeeeCCcchhhhhhhcc
Confidence 334445568999999999999999999753220111001 12333333333332100 00000000
Q ss_pred CCCCCceEEEEEcCCCCcc-------cHHHHHHHHHhhcceEEEEecch
Q 004467 92 ERNGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 133 (752)
Q Consensus 92 ~~~~~~~~inliDtPGh~d-------f~~e~~~~l~~~D~avlvvda~~ 133 (752)
....-...+.++|+||... +.......++.+|+++.|+|+.+
T Consensus 79 ~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 79 PKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0000124689999999544 44567788899999999999976
No 203
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.70 E-value=9.3e-06 Score=85.82 Aligned_cols=102 Identities=11% Similarity=0.187 Sum_probs=66.9
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCceEEE
Q 004467 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLIN 101 (752)
Q Consensus 22 i~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~in 101 (752)
|.++|..++|||||+.++. .+..... ...-+.|+......+ . ....++
T Consensus 2 IvllGdsgvGKTSLl~~~~--~~~~~~~-------------~~~~~~Tig~~~~~v--~---------------~~v~Lq 49 (331)
T 3r7w_B 2 VLLMGVRRCGKSSICKVVF--HNMQPLD-------------TLYLESTSNPSLEHF--S---------------TLIDLA 49 (331)
T ss_dssp EEEECSTTSSTTHHHHHHH--SCCCSGG-------------GTTCCCCCSCCCEEE--C---------------SSSCEE
T ss_pred EEEECCCCCCHHHHHHHHH--cCCCCCc-------------cceecCeeeeeeEEE--c---------------cEEEEE
Confidence 7899999999999998653 1111100 001133444433322 1 246899
Q ss_pred EEcCCCCcccHH---HHHHHHHhhcceEEEEecchhHH-------HHHH---H--hCCCHHHHHHHhhC
Q 004467 102 LIDSPGHVDFSS---EVTAALRITDGALVVVDCIEGVC-------MYAS---K--FGVDESKMMERLWG 155 (752)
Q Consensus 102 liDtPGh~df~~---e~~~~l~~~D~avlvvda~~Gv~-------~~~~---~--~~~p~~~~inkldg 155 (752)
+.||||+.+|.. ....-.+.+|++|+|+|++.... .+.. . -++|.+++.||+|.
T Consensus 50 IWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL 118 (331)
T 3r7w_B 50 VMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDG 118 (331)
T ss_dssp EEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCS
T ss_pred EEECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECccc
Confidence 999999999953 34566789999999999987511 1121 1 36888888999994
No 204
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.58 E-value=8.2e-05 Score=84.93 Aligned_cols=105 Identities=15% Similarity=0.159 Sum_probs=60.3
Q ss_pred HHHHHHhhcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccch
Q 004467 6 AEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDA 85 (752)
Q Consensus 6 ~~~~~~~~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~ 85 (752)
.+-+.-+.....+...|+|+|.+++|||||+++|+.....+.- .| .|...+...+.|..+.
T Consensus 25 ~eal~~L~~i~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~--~~---------------tt~~~T~gi~~~~~~~-- 85 (592)
T 1f5n_A 25 PEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSL--GS---------------TVQSHTKGIWMWCVPH-- 85 (592)
T ss_dssp HHHHHHHHTCCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCC--CC---------------SSSCCCCSEEEEEEEC--
T ss_pred HHHHHHHHhccCCCcEEEEECCCCCCHHHHHHhHcCCCCcccc--CC---------------CCCCceeEEEEeeccc--
Confidence 3444434443456788999999999999999999643221211 11 1111111122342100
Q ss_pred hccccCCCCCCceEEEEEcCCCCcccHH------HHHHHHHhhcceEEEEecchhHH
Q 004467 86 LKSYKGERNGNEYLINLIDSPGHVDFSS------EVTAALRITDGALVVVDCIEGVC 136 (752)
Q Consensus 86 ~~~~~~~~~~~~~~inliDtPGh~df~~------e~~~~l~~~D~avlvvda~~Gv~ 136 (752)
....+..+.||||||..+... ..+.++...-.+++|+|+..++.
T Consensus 86 -------~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~ 135 (592)
T 1f5n_A 86 -------PKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTIN 135 (592)
T ss_dssp -------SSSTTCEEEEEEECCBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSS
T ss_pred -------ccCCCceEEEecCCCcCcccccchhHHHHHHHHHHHhcCeEEEECCCCcc
Confidence 011356899999999765432 12334555445689999988876
No 205
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.53 E-value=3.5e-06 Score=91.44 Aligned_cols=107 Identities=15% Similarity=0.104 Sum_probs=62.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCce
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (752)
-++|+++|.+|+|||||+++|+.....-. +.....+ ..|.|..... +.+ +.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~----~~~~~~~------~~gtT~~~~~--~~~-----------------~~ 212 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKG----NVITTSY------FPGTTLDMIE--IPL-----------------ES 212 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTT----CCCEEEE------CTTSSCEEEE--EEC-----------------ST
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCc----cceeecC------CCCeEEeeEE--EEe-----------------CC
Confidence 46899999999999999999986621000 0000011 1133433221 222 22
Q ss_pred EEEEEcCCCCcccH-------HHHHHHH---HhhcceEEEEecchh-----HH--HHHHHhCCCHHHHHHHhh
Q 004467 99 LINLIDSPGHVDFS-------SEVTAAL---RITDGALVVVDCIEG-----VC--MYASKFGVDESKMMERLW 154 (752)
Q Consensus 99 ~inliDtPGh~df~-------~e~~~~l---~~~D~avlvvda~~G-----v~--~~~~~~~~p~~~~inkld 154 (752)
.++++||||..+.. .+....+ ...|..++++|+... .. .++...++|.++++||.|
T Consensus 213 ~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d 285 (369)
T 3ec1_A 213 GATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANEL 285 (369)
T ss_dssp TCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTS
T ss_pred CeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCc
Confidence 47999999965432 2333444 678999999999432 21 222334566677777766
No 206
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.49 E-value=1.8e-05 Score=83.05 Aligned_cols=129 Identities=16% Similarity=0.096 Sum_probs=69.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCccccCCc-----hhH------hHhcceeccceEEEEEeeccchhc
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTR-----ADE------AERGITIKSTGISLYYEMTDDALK 87 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~-----~~E------~eRgiTi~s~~~~~~~~~~~~~~~ 87 (752)
.+.++++|+.|+||||++..|..... . ..+++.+.|.. ..| ...|+.+-..... .++...+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~---~-~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~---~~p~~~~~ 170 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK---K-KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGE---KDVVGIAK 170 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH---H-TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTC---CCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---H-CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCC---CCHHHHHH
Confidence 56899999999999999999965432 1 01223232222 111 1234433221000 00000000
Q ss_pred cccCCCCCCceEEEEEcCCCCcc--cHHHHH------HHHHhhcceEEEEecchhHH--HHHHHh--CCC-HHHHHHHhh
Q 004467 88 SYKGERNGNEYLINLIDSPGHVD--FSSEVT------AALRITDGALVVVDCIEGVC--MYASKF--GVD-ESKMMERLW 154 (752)
Q Consensus 88 ~~~~~~~~~~~~inliDtPGh~d--f~~e~~------~~l~~~D~avlvvda~~Gv~--~~~~~~--~~p-~~~~inkld 154 (752)
......+.++|.+.||||||... ....+. ..+..+|.+++|+|+..|.. ..++.+ .++ ..+++||+|
T Consensus 171 ~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~~~i~gvVlnk~D 250 (297)
T 1j8m_F 171 RGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMD 250 (297)
T ss_dssp HHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHTCTTEEEEEECGG
T ss_pred HHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 00001111367899999999776 433332 34567899999999998743 333333 355 334567777
No 207
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.40 E-value=8.8e-06 Score=88.23 Aligned_cols=107 Identities=12% Similarity=0.123 Sum_probs=60.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCC-ccccCCCccccCCchhHhHhcceeccceEEEEEeeccchhccccCCCCCCc
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGII-AQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i-~~~~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (752)
-++|+++|.+|+|||||+++|+...... +. . ....+ ..|.|..... +.+ .
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~--~--~~~~~------~~gtT~~~~~--~~~-----------------~ 210 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETEN--V--ITTSH------FPGTTLDLID--IPL-----------------D 210 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSS--C--CEEEC------CC----CEEE--EES-----------------S
T ss_pred cceEEEecCCCCChhHHHHHHHhhhcccccc--c--eecCC------CCCeecceEE--EEe-----------------c
Confidence 3689999999999999999998763211 10 0 00011 1133432221 112 1
Q ss_pred eEEEEEcCCCCcccH-------HHHHHH---HHhhcceEEEEecchh-----HH--HHHHHhCCCHHHHHHHhh
Q 004467 98 YLINLIDSPGHVDFS-------SEVTAA---LRITDGALVVVDCIEG-----VC--MYASKFGVDESKMMERLW 154 (752)
Q Consensus 98 ~~inliDtPGh~df~-------~e~~~~---l~~~D~avlvvda~~G-----v~--~~~~~~~~p~~~~inkld 154 (752)
..+.++||||..+.. .+.... ....|..++++|+... .. .++...++|.++++||+|
T Consensus 211 ~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d 284 (368)
T 3h2y_A 211 EESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRL 284 (368)
T ss_dssp SSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTS
T ss_pred CCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCcc
Confidence 237899999965432 233332 2467889999998432 11 223334567777777776
No 208
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.30 E-value=0.00018 Score=79.24 Aligned_cols=132 Identities=17% Similarity=0.082 Sum_probs=68.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC-ccc--cCCc---hhHh------HhcceeccceEEEEEeeccchh
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-VRM--TDTR---ADEA------ERGITIKSTGISLYYEMTDDAL 86 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~-~~~--~D~~---~~E~------eRgiTi~s~~~~~~~~~~~~~~ 86 (752)
.+.|+++|..|+||||++..|...... .|. +.+ .|.. ..|+ ..|+.+..... ...+...+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~-----~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~---~~dp~~i~ 171 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQK-----RGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQ---EKDAIKLA 171 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT-----TTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTT---CCCHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHH-----CCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCC---CCCHHHHH
Confidence 678999999999999999999754321 121 111 1211 1122 22332211000 00000000
Q ss_pred ccccCCCCCCceEEEEEcCCCCccc----HHHHHH--HHHhhcceEEEEecchhHH--HHHHHhC--CCH-HHHHHHhhC
Q 004467 87 KSYKGERNGNEYLINLIDSPGHVDF----SSEVTA--ALRITDGALVVVDCIEGVC--MYASKFG--VDE-SKMMERLWG 155 (752)
Q Consensus 87 ~~~~~~~~~~~~~inliDtPGh~df----~~e~~~--~l~~~D~avlvvda~~Gv~--~~~~~~~--~p~-~~~inkldg 155 (752)
..........++.+.||||||.... ..++.. .+..+|.+++|+||..|-. ..+..+. ++. .+++||+|+
T Consensus 172 ~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 172 KEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDG 251 (443)
T ss_dssp HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHSCTTEEEEEECCSS
T ss_pred HHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhhCCCeEEEEECCCC
Confidence 0000001113478999999995433 333222 2234699999999999854 3334332 333 367799996
Q ss_pred CCC
Q 004467 156 ENF 158 (752)
Q Consensus 156 ~~~ 158 (752)
...
T Consensus 252 ~~~ 254 (443)
T 3dm5_A 252 SAK 254 (443)
T ss_dssp CSS
T ss_pred ccc
Confidence 543
No 209
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.20 E-value=2e-05 Score=80.87 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.8
Q ss_pred CCeeEEEEEeCC---------CCChHHHHHHHHH
Q 004467 17 HNIRNMSVIAHV---------DHGKSTLTDSLVA 41 (752)
Q Consensus 17 ~~iRni~iighv---------d~GKTTL~~~ll~ 41 (752)
....+|+++|.. ++|||||+++|+.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 345689999999 9999999999974
No 210
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.08 E-value=0.00017 Score=77.12 Aligned_cols=56 Identities=16% Similarity=0.109 Sum_probs=34.6
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHHHH-H--HHhCCCHHHHHHHhh
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCMY-A--SKFGVDESKMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~~~-~--~~~~~p~~~~inkld 154 (752)
.++.+.||||||..+=.. .....+|.+++|+|+..|-... . ....++.++++||+|
T Consensus 146 ~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivvlNK~D 204 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAVNKAD 204 (337)
T ss_dssp TTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTHHHHCSEEEEECCS
T ss_pred CCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEEEEchh
Confidence 367899999999654221 2347899999999987553210 0 001235556669988
No 211
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.98 E-value=0.00018 Score=71.87 Aligned_cols=127 Identities=14% Similarity=0.125 Sum_probs=63.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCccc-----cCCCccccCCchhHhHhcceeccceEEEEEee----ccc-hh
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE-----VAGDVRMTDTRADEAERGITIKSTGISLYYEM----TDD-AL 86 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~~~-----~~g~~~~~D~~~~E~eRgiTi~s~~~~~~~~~----~~~-~~ 86 (752)
.++++|+++|+.|+|||||+.+|+.......+. +.+ ...|....++ .|.. .+.+.... ... ..
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~--~~~d~~~~~~-~~~~----~~~~~~~~~~~l~~~~~~ 108 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI--AKFDAERMEK-HGAK----VVPLNTGKECHLDAHLVG 108 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT--THHHHHHHHT-TTCE----EEEEECTTCSSCCHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC--CCccHHHHHh-cCCc----EEEecCCceEeccHHHHH
Confidence 468999999999999999999998764321110 011 0111111111 1111 11111000 000 00
Q ss_pred ccccCCCCCCceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchhHH---HHHHHhCCCHHHHHHHhh
Q 004467 87 KSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC---MYASKFGVDESKMMERLW 154 (752)
Q Consensus 87 ~~~~~~~~~~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~Gv~---~~~~~~~~p~~~~inkld 154 (752)
..+. .....++.+.++||+|...-.... -...+..+.|+|+..+.. .+...++.|.++++||+|
T Consensus 109 ~~~~-~l~~~~~d~~~id~~g~i~~~~s~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~NK~D 175 (226)
T 2hf9_A 109 HALE-DLNLDEIDLLFIENVGNLICPADF---DLGTHKRIVVISTTEGDDTIEKHPGIMKTADLIVINKID 175 (226)
T ss_dssp HHHT-TSCGGGCSEEEEECCSCSSGGGGC---CCSCSEEEEEEEGGGCTTTTTTCHHHHTTCSEEEEECGG
T ss_pred HHHH-HHhcCCCCEEEEeCCCCccCcchh---hhccCcEEEEEecCcchhhHhhhhhHhhcCCEEEEeccc
Confidence 0011 111224578999999942110000 023456678888766543 233445677788889988
No 212
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.92 E-value=0.00031 Score=72.62 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~ 43 (752)
-|++++|+.|+|||||++.|....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999997543
No 213
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.84 E-value=0.0002 Score=78.60 Aligned_cols=21 Identities=38% Similarity=0.472 Sum_probs=19.1
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLV 40 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll 40 (752)
-+|+|+|+.|+|||||+++|+
T Consensus 32 f~I~lvG~sGaGKSTLln~L~ 52 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLF 52 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHh
Confidence 468999999999999999994
No 214
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.76 E-value=0.0011 Score=69.01 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHH
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVA 41 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~ 41 (752)
+..+++++|.+|+|||||+++|+.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~ 142 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAK 142 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCceEEEEecCCCchHHHHHHHhc
Confidence 446799999999999999999963
No 215
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.76 E-value=0.00032 Score=76.84 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=20.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHH
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVA 41 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~ 41 (752)
.+-|++|+|+.|+|||||++.|+.
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhC
Confidence 455799999999999999999953
No 216
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.62 E-value=0.00073 Score=75.09 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=21.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHH
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~ 42 (752)
-..++|+|..|+|||||+..|...
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHH
Confidence 468999999999999999998644
No 217
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.41 E-value=0.0017 Score=66.79 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLV 40 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll 40 (752)
.+++++|..|+|||||+++|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~ 120 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLK 120 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred hheEEeCCCCCCHHHHHHHHh
Confidence 689999999999999999996
No 218
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2
Probab=96.39 E-value=0.0064 Score=58.44 Aligned_cols=110 Identities=21% Similarity=0.229 Sum_probs=93.5
Q ss_pred CCCeeeeEEEEEeeeecccccccCCCchHHHHHHHHHHHHHhCCCeEEeeEEEEEEEecCcccccHHHHhhhhccccccc
Q 004467 588 EENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEE 667 (752)
Q Consensus 588 ~~pv~~v~v~l~d~~~~~d~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~ 667 (752)
+..+.||.+.++-+- .-...+++-++.|-..|.++|+..++.+-..|...+.|+++-..+|+|...|.+.. .|.+.
T Consensus 80 ~~~l~nv~vVVtRyf---GGi~LG~ggLvraY~~~a~~al~~~~~~~~~~~~~~~~~~~Y~~~~~v~~~l~~~~-~i~~~ 155 (191)
T 2cve_A 80 AQGLDRVAVLVVRYF---GGVKLGAGGLVRAYGGVAAEALRRAPKVPLVERVGLAFLVPFAEVGRVYALLEARA-LKAEE 155 (191)
T ss_dssp HTTBCSEEEEEEEEC---CSSCCHHHHHHHHHHHHHHHHHHHSCEEECCCEEEEEEEECGGGHHHHHHHHHHTT-CCEEE
T ss_pred HcCCCcEEEEEEEEe---CCcccCcchHHHHHHHHHHHHHHhCCcEEEeeeeEEEEEEchhhHHHHHHHHHHcC-ceecc
Confidence 567888888877542 34556666667788899999999999999999999999999999999999999988 88887
Q ss_pred cccCCCCc-EEEEEEecchhhcCchHHhhhhCCCceee
Q 004467 668 MQRPGTPL-YNIKAYLPVIESFGFSGTLRAATSGQAFP 704 (752)
Q Consensus 668 ~~~~~~~~-~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~ 704 (752)
+-.+ . +.++..+|..+.-.|...|..+|+|++.+
T Consensus 156 ~y~~---~gV~~~~~v~~~~~~~~~~~l~~~t~G~~~~ 190 (191)
T 2cve_A 156 TYTP---EGVRFALLLPKPEREGFLRALLDATRGQVAL 190 (191)
T ss_dssp EEET---TEEEEEEEEEHHHHHHHHHHHHHHTTTCCEE
T ss_pred EEcC---CeEEEEEEECHHHHHHHHHHHHHHhCCeEEe
Confidence 7643 4 78999999999999999999999999754
No 219
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.29 E-value=0.017 Score=63.57 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=30.6
Q ss_pred cCHHHHHHhhcc----cCCeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 4 FTAEGLRRIMDF----KHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 4 ~~~~~~~~~~~~----~~~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
++.+-+..++.. ..++-.|+|+|..++|||||+++|+.+
T Consensus 48 v~~eal~~iL~~~~~~~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 48 LDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp ECHHHHHHHHCCTTTTTSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ECHHHHHHHHhccccCCCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 345566555543 346889999999999999999999876
No 220
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.23 E-value=0.0008 Score=70.72 Aligned_cols=25 Identities=24% Similarity=0.119 Sum_probs=21.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
....++|+|+.|+|||||+..|...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3568999999999999999999644
No 221
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Probab=96.21 E-value=0.0076 Score=59.15 Aligned_cols=112 Identities=17% Similarity=0.178 Sum_probs=94.6
Q ss_pred CCCeeeeEEEEEeeeecccccccCCCchHHHHHHHHHHHHHhCCCeEEeeEEEEEEEecCcccccHHHHhhhhccccccc
Q 004467 588 EENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEE 667 (752)
Q Consensus 588 ~~pv~~v~v~l~d~~~~~d~~~~~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~ 667 (752)
+..+.||.|.++-+- .-...+++-+..|-..|.++|+.+|+.+-..|...+.|+++-..+|+|...|.+..+.|++.
T Consensus 92 ~~~l~nv~vVVtRyf---GGikLG~ggLvraY~~aa~~aL~~~~~v~~~~~~~~~i~~~Y~~~~~v~~~l~~~~~~i~~~ 168 (217)
T 1vi7_A 92 GSGVGEITAVVVRYY---GGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYHQLTGIEALLGQCDGKIINS 168 (217)
T ss_dssp HHTCCSEEEECCEEC---CSCCCCHHHHHHHHHHHHHHHHTTCCEEEECCCEEEEEEECTTTHHHHHHHHHHTTCEEEEE
T ss_pred HcCCCCEEEEEEEEe---CCceecccHHHHHHHHHHHHHHHhCCeEEEeeeeEEEEEEccchHHHHHHHHHHCCCEEEce
Confidence 446778877766432 34566666666788999999999999999999999999999999999999999999999888
Q ss_pred cccCCCCcEEEEEEecchhhcCchHHhhhhCCCceeee
Q 004467 668 MQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQ 705 (752)
Q Consensus 668 ~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 705 (752)
+-. ..+.++..+|..+.-.|...|..+|+|++.+.
T Consensus 169 ~y~---~~V~~~l~v~~~~~~~~~~~l~~~t~G~~~~~ 203 (217)
T 1vi7_A 169 DYQ---AFVLLRVALPAAKVAEFSAKLADFSRGSLQLL 203 (217)
T ss_dssp EES---SSEEEEEEECSSTHHHHHHHHHHHHTTCCCCE
T ss_pred Eec---CCEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 764 35788999999999999999999999998543
No 222
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.12 E-value=0.0021 Score=68.24 Aligned_cols=131 Identities=15% Similarity=0.137 Sum_probs=65.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCcccc--C---CchhHhHhcceeccceEEEEEeecc--ch---hc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMT--D---TRADEAERGITIKSTGISLYYEMTD--DA---LK 87 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~--D---~~~~E~eRgiTi~s~~~~~~~~~~~--~~---~~ 87 (752)
+-..++++|+.|+|||||+..|..... . ..|++.+. | ..+.|+-+-..-... +.+.+.... +. ..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~---~-~~g~V~l~g~D~~r~~a~eql~~~~~~~g-v~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLK---N-HGFSVVIAASDTFRAGAIEQLEEHAKRIG-VKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH---H-TTCCEEEEEECCSSTTHHHHHHHHHHHTT-CEEECCCTTCCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---h-cCCEEEEEeecccccchHHHHHHHHHHcC-ceEEeccccCCHHHHHHH
Confidence 356899999999999999999964421 1 13332211 2 122332111110111 111111100 00 00
Q ss_pred cccCCCCCCceEEEEEcCCCCcc----cHHHHHHHH--HhhcceEEEEecchhHH--HHHH----HhCCCHHHHHHHhhC
Q 004467 88 SYKGERNGNEYLINLIDSPGHVD----FSSEVTAAL--RITDGALVVVDCIEGVC--MYAS----KFGVDESKMMERLWG 155 (752)
Q Consensus 88 ~~~~~~~~~~~~inliDtPGh~d----f~~e~~~~l--~~~D~avlvvda~~Gv~--~~~~----~~~~p~~~~inkldg 155 (752)
++.-. ...++.+.++||+|... +..++..-. -..|-.++++|+..|-. .+++ ..++. .+++||+|+
T Consensus 203 ~l~~~-~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~~it-~iilTKlD~ 280 (328)
T 3e70_C 203 AIQHA-KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAVKID-GIILTKLDA 280 (328)
T ss_dssp HHHHH-HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCC-EEEEECGGG
T ss_pred HHHHH-HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhcCCC-EEEEeCcCC
Confidence 11000 00134567899999643 344433222 24689999999998854 2333 33443 456688884
No 223
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.11 E-value=0.003 Score=66.77 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=21.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
..+.|+++|..|+||||++..|...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998544
No 224
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.82 E-value=0.015 Score=60.64 Aligned_cols=105 Identities=14% Similarity=0.164 Sum_probs=55.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCC-CccccCCc-----hhHhH------hcceeccceEEEEEeeccch
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG-DVRMTDTR-----ADEAE------RGITIKSTGISLYYEMTDDA 85 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g-~~~~~D~~-----~~E~e------RgiTi~s~~~~~~~~~~~~~ 85 (752)
+.++++++|+.|+||||++..|...... . .| ++.+.|.. ..|+- .|+.+... + ....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~--~--~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~-----~--~~~~ 172 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML--E--KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVC-----Y--TKEE 172 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH--T--TCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBC-----S--SHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH--h--cCCEEEEEecCcccchHHHHHHHHHHhcCCCeEec-----C--CHHH
Confidence 4579999999999999999998643210 0 12 12221111 11111 12221110 0 0000
Q ss_pred hc-cccCCCCCCceEEEEEcCCCCcccHHHHHHH----HH--hhcceEEEEecchhHH
Q 004467 86 LK-SYKGERNGNEYLINLIDSPGHVDFSSEVTAA----LR--ITDGALVVVDCIEGVC 136 (752)
Q Consensus 86 ~~-~~~~~~~~~~~~inliDtPGh~df~~e~~~~----l~--~~D~avlvvda~~Gv~ 136 (752)
+. .+. . ..++.+.||||||......+.... +. ..|..++|+|+..+..
T Consensus 173 l~~al~-~--~~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~ 227 (296)
T 2px0_A 173 FQQAKE-L--FSEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE 227 (296)
T ss_dssp HHHHHH-H--GGGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH
T ss_pred HHHHHH-H--hcCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH
Confidence 00 000 0 135789999999976554433322 22 2577899999998854
No 225
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.60 E-value=0.014 Score=61.04 Aligned_cols=21 Identities=38% Similarity=0.472 Sum_probs=19.2
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLV 40 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll 40 (752)
-+|+++|+.|+|||||+++|.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~ 39 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLF 39 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 578999999999999999984
No 226
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.58 E-value=0.014 Score=61.19 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=21.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
..+.|+++|+.|+||||++..|...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH
Confidence 3568999999999999999999644
No 227
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.51 E-value=0.0061 Score=70.31 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHH
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLV 40 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll 40 (752)
+..++|+|+.|||||||++.|.
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~ 66 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALS 66 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHH
T ss_pred CCeEEEECCCCChHHHHHHHHh
Confidence 4459999999999999999995
No 228
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.26 E-value=0.011 Score=64.60 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHH
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVA 41 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~ 41 (752)
.-+++|+|+.|+|||||++.|..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhC
Confidence 34899999999999999999953
No 229
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.16 E-value=0.0093 Score=65.36 Aligned_cols=132 Identities=18% Similarity=0.193 Sum_probs=66.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCcccc--CC---chhHh------HhcceeccceEEEEEeeccchh
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMT--DT---RADEA------ERGITIKSTGISLYYEMTDDAL 86 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~~~--D~---~~~E~------eRgiTi~s~~~~~~~~~~~~~~ 86 (752)
..+.|+++|+.|+||||++..|......- .+++.+. |. ...|+ ..|+.+-.+.. ...+...+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~----g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~---~~~p~~i~ 169 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK----GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMD---GESPESIR 169 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT----TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCT---TCCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEeeccccCchhHHHHHHhcccCCccEEecCC---CCCHHHHH
Confidence 35789999999999999999996543210 1222221 21 11222 12332211100 00000000
Q ss_pred ccccCCCCCCceEEEEEcCCCCccc----HHHHHH--HHHhhcceEEEEecchhHH--HHHHHhC--CC-HHHHHHHhhC
Q 004467 87 KSYKGERNGNEYLINLIDSPGHVDF----SSEVTA--ALRITDGALVVVDCIEGVC--MYASKFG--VD-ESKMMERLWG 155 (752)
Q Consensus 87 ~~~~~~~~~~~~~inliDtPGh~df----~~e~~~--~l~~~D~avlvvda~~Gv~--~~~~~~~--~p-~~~~inkldg 155 (752)
.......+..+|.+.||||||.... ..++.. .+..+|.+++|+|+..|.. ..++.++ ++ .-+++||+|+
T Consensus 170 ~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a~~f~~~l~i~GVIlTKlD~ 249 (425)
T 2ffh_A 170 RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDG 249 (425)
T ss_dssp HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHTCCCEEEEESGGG
T ss_pred HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHHHHHHhcCCceEEEEeCcCC
Confidence 1000011113678899999996543 333222 2235899999999998733 3333332 33 2346689885
Q ss_pred C
Q 004467 156 E 156 (752)
Q Consensus 156 ~ 156 (752)
.
T Consensus 250 ~ 250 (425)
T 2ffh_A 250 D 250 (425)
T ss_dssp C
T ss_pred c
Confidence 4
No 230
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.77 E-value=0.02 Score=55.59 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=30.0
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~G 134 (752)
.|.+.+||||+.. ...+..++..+|.+|+++.....
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~ 110 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL 110 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH
Confidence 5789999999976 45678889999999999987653
No 231
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.56 E-value=0.013 Score=61.26 Aligned_cols=25 Identities=16% Similarity=0.120 Sum_probs=21.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
..+.++++|+.|+||||++..|...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998543
No 232
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=94.26 E-value=0.15 Score=44.54 Aligned_cols=65 Identities=20% Similarity=0.261 Sum_probs=42.7
Q ss_pred CCeEEEEEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEE
Q 004467 283 GPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVA 362 (752)
Q Consensus 283 ~pl~~~V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIva 362 (752)
-|....|-+++..-+ |. +..|||.+|+|++|+.| +.+ .. ..+|.+|.. +.+++++|.|||.|+
T Consensus 33 ~P~k~~ilp~~~~vF-gp-vivGrVe~G~LK~G~~V---Pg~----~~----vg~VkSIE~----~~e~v~eA~~GdnVa 95 (116)
T 1xe1_A 33 PAGKVVVEEVVNIMG-KD-VIIGTVESGMIGVGFKV---KGP----SG----IGGIVRIER----NREKVEFAIAGDRIG 95 (116)
T ss_dssp CSEEEEEEEEEEETT-EE-EEEEEEEEEEEETTCEE---ECS----SC----EEEEEEEEE----TTEEESEEETTCEEE
T ss_pred CcEEEEEEecCCeEE-CC-eeEEEEeEEEEcCCCCc---CCC----ce----EEEEEEEEE----CCcCcCCcCCCCEEE
Confidence 455555554222122 44 77889999999999999 211 01 135555553 557899999999998
Q ss_pred Ee
Q 004467 363 MV 364 (752)
Q Consensus 363 i~ 364 (752)
+.
T Consensus 96 i~ 97 (116)
T 1xe1_A 96 IS 97 (116)
T ss_dssp EE
T ss_pred EE
Confidence 84
No 233
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.20 E-value=0.021 Score=59.82 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLV 40 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll 40 (752)
..++++|+.|+|||||+++|+
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHhc
Confidence 579999999999999999994
No 234
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.93 E-value=0.0078 Score=59.38 Aligned_cols=36 Identities=17% Similarity=0.027 Sum_probs=29.3
Q ss_pred ceEEEEEcCCCC-cccHHHHHHHHHhhcceEEEEecchh
Q 004467 97 EYLINLIDSPGH-VDFSSEVTAALRITDGALVVVDCIEG 134 (752)
Q Consensus 97 ~~~inliDtPGh-~df~~e~~~~l~~~D~avlvvda~~G 134 (752)
.|.+.+||||+. .+. .+..++..+|.+|+++.+...
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~ 103 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDAL 103 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHH
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCch
Confidence 578999999997 443 466788999999999998764
No 235
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.81 E-value=0.073 Score=55.58 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLV 40 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll 40 (752)
..++++|+.|+|||||+++|+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999997
No 236
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.80 E-value=0.063 Score=52.16 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=24.3
Q ss_pred HHHHhhcccCCeeEEEEEeCCCCChHHHHHHHHHHcCCC
Q 004467 8 GLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGII 46 (752)
Q Consensus 8 ~~~~~~~~~~~iRni~iighvd~GKTTL~~~ll~~~g~i 46 (752)
++..+|+. ..-..|+|+|..|||||||+..|....|.+
T Consensus 19 ~~~~~m~~-~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~ 56 (200)
T 4eun_A 19 YFQSMMTG-EPTRHVVVMGVSGSGKTTIAHGVADETGLE 56 (200)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHHCCE
T ss_pred HHHhhhcC-CCCcEEEEECCCCCCHHHHHHHHHHhhCCe
Confidence 34455542 345789999999999999999997665643
No 237
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=92.52 E-value=0.31 Score=53.42 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=30.2
Q ss_pred cCHHHHHHhhcc----cCCeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 4 FTAEGLRRIMDF----KHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 4 ~~~~~~~~~~~~----~~~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
++.+-+..++.. ...+..|+|+|...+|||+|++.|+..
T Consensus 48 ln~eAl~~iL~~~~i~~~~v~vvsv~G~~~~gks~l~N~ll~~ 90 (457)
T 4ido_A 48 LDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (457)
T ss_dssp ECHHHHHHHHSSTTTTTSBEEEEEEEEBTTSSHHHHHHHHHHH
T ss_pred ECHHHHHHHHhccccCCCceEEEEEECCCCCchhHHHHHHHHH
Confidence 445666665543 356889999999999999999988754
No 238
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.50 E-value=0.072 Score=51.01 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=21.5
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHH
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLV 40 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll 40 (752)
...-..++++|+.|||||||+..|.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4445689999999999999999994
No 239
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.38 E-value=0.075 Score=50.85 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcC
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g 44 (752)
+++|+|+.|+|||||+..|....+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999965543
No 240
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.37 E-value=0.057 Score=51.86 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~ 42 (752)
+.++|+|+.|||||||++.|+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999754
No 241
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.32 E-value=0.059 Score=52.42 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=20.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHH
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~ 42 (752)
-+.++|+|+.|+|||||++.|+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 467999999999999999999754
No 242
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.20 E-value=0.099 Score=49.33 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=23.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGI 45 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~ 45 (752)
.-..|+++|+.|||||||+..|....|.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~ 34 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHA 34 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCc
Confidence 4568999999999999999998665553
No 243
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.20 E-value=0.089 Score=50.20 Aligned_cols=25 Identities=8% Similarity=0.333 Sum_probs=21.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
-+.++|+|+.|||||||++.|+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3579999999999999999997653
No 244
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.93 E-value=0.12 Score=53.80 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=19.1
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLV 40 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll 40 (752)
..++++|+.|+|||||++.|.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHS
T ss_pred CeEEEECCCCCcHHHHHHHhc
Confidence 468999999999999999993
No 245
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.73 E-value=0.15 Score=49.76 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=22.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
..-..|+|+|+.|||||||+..|...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999988543
No 246
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=91.71 E-value=0.095 Score=42.51 Aligned_cols=63 Identities=21% Similarity=0.228 Sum_probs=53.8
Q ss_pred EEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhhcCchHHhhhhCCCceee
Q 004467 639 YMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFP 704 (752)
Q Consensus 639 ~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~ 704 (752)
-+..++++-..+|+|...|.+..+.|.+.+-. ..+.+...+|..+.-.|...|+.+|+|++.+
T Consensus 8 ~~~~l~~dY~~~g~v~~~L~~~~~~I~~~~Y~---~~V~l~v~vp~~~~~~~~~~L~d~t~G~~~~ 70 (76)
T 3lh2_S 8 TEYTLQANWFDITGILWLLGQVDGKIINSDVQ---AFVLLRVALPAAKVAEFSAKLADFSGGSLQL 70 (76)
T ss_dssp EEEEEEECHHHHHHHHHHHHHTTCEEEEEEEE---EEEEEEEEECC-CC-CHHHHHHHHHTTCCCB
T ss_pred eeEEEEEcccCHHHHHHHHHHCCCEEEccccc---CeEEEEEEECHHHHHHHHHHHHHHhCCEEEE
Confidence 35678899999999999999999999988764 3689999999999999999999999999854
No 247
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.57 E-value=0.11 Score=48.69 Aligned_cols=25 Identities=16% Similarity=-0.080 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g 44 (752)
++|+|.|..||||||++..|....|
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999976554
No 248
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.50 E-value=0.15 Score=52.18 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=23.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD 53 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~ 53 (752)
..++|+|+.|||||||+..| +|.+... .|+
T Consensus 38 e~~~liG~nGsGKSTLl~~l---~Gl~~p~-~G~ 67 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLL---TGYLSPS-HGE 67 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHH---TSSSCCS-SCE
T ss_pred CEEEEECCCCCcHHHHHHHH---hcCCCCC-CcE
Confidence 46899999999999999998 5555432 454
No 249
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.46 E-value=0.11 Score=50.35 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=23.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCC
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGI 45 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~ 45 (752)
.+.|+|+|..|||||||+..|....|.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~ 44 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGY 44 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999766553
No 250
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.43 E-value=0.11 Score=50.26 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
-..++|+|+.|||||||+..|....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3579999999999999999997653
No 251
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.42 E-value=0.11 Score=49.14 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
+++.++|+|+.|+|||||+.+|+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999754
No 252
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=91.36 E-value=0.024 Score=60.61 Aligned_cols=58 Identities=5% Similarity=0.005 Sum_probs=45.8
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchh------------HH-------HHHHH---hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG------------VC-------MYASK---FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~G------------v~-------~~~~~---~~~p~~~~inkld 154 (752)
+..+.+.||+|+..|..-.....+.+|++|+|+|.++- +. ..+.. .++|.++|.||.|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 68899999999999988777788899999999999872 22 11111 3578888889988
No 253
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.27 E-value=0.11 Score=48.79 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g 44 (752)
.+|+|+|..|||||||+..|....|
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999865544
No 254
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.23 E-value=0.13 Score=48.06 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g 44 (752)
..|+|+|..||||||++..| ...|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC
Confidence 47899999999999999999 5554
No 255
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.06 E-value=0.11 Score=50.68 Aligned_cols=27 Identities=22% Similarity=0.106 Sum_probs=22.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
..-..++|+|+.|||||||++.|....
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 344679999999999999999996543
No 256
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.03 E-value=0.13 Score=50.24 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
.-..|+|+|+.|||||||+..|...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999999999999654
No 257
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=91.03 E-value=0.02 Score=61.49 Aligned_cols=58 Identities=10% Similarity=0.083 Sum_probs=39.2
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecch------------hHH-------HHHHH---hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------GVC-------MYASK---FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~------------Gv~-------~~~~~---~~~p~~~~inkld 154 (752)
+..+.+.||+|+..|..-.....+.+|++|+|+|.++ -.. ..+.. .++|.++|.||.|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 6789999999999888777777789999999999987 222 11211 3678888889988
No 258
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.99 E-value=0.14 Score=51.38 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=24.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCc
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIA 47 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~ 47 (752)
...|+|+|+.|||||||+..|....|...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 46899999999999999999976666543
No 259
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.94 E-value=0.15 Score=53.15 Aligned_cols=38 Identities=24% Similarity=0.210 Sum_probs=28.7
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchh
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~G 134 (752)
+.|.+.+||||+..... .+..++..+|.+|+|+.+..-
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~ 192 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFD 192 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHH
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHH
Confidence 36889999999865432 334578899999999988753
No 260
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.78 E-value=0.17 Score=48.68 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=22.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
.+..+|+|.|..||||||++..|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999988654
No 261
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.70 E-value=0.15 Score=48.48 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=21.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
.++.++|+|..|+|||||+++|+..
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3678999999999999999999754
No 262
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=90.67 E-value=0.18 Score=48.33 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
+.+.|+|.|..||||||++..|....|
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999976555
No 263
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.55 E-value=0.14 Score=47.91 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=22.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
..-..++++|+.|||||||+..|....
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344579999999999999999996554
No 264
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=90.53 E-value=0.15 Score=49.79 Aligned_cols=26 Identities=12% Similarity=0.107 Sum_probs=22.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
.-+.|+|+|+.|+|||||+..|....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999997654
No 265
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.33 E-value=0.13 Score=50.73 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
.-..++|+|+.|||||||++.|....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 44679999999999999999997543
No 266
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.31 E-value=0.18 Score=49.02 Aligned_cols=27 Identities=15% Similarity=0.379 Sum_probs=23.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
..-+.|+|+|+.|+|||||+++|+...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 345789999999999999999998664
No 267
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.31 E-value=0.18 Score=49.93 Aligned_cols=28 Identities=11% Similarity=0.215 Sum_probs=22.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
.+..+|+|+|..||||||++..|....|
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3457899999999999999999976655
No 268
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.20 E-value=0.15 Score=49.29 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=20.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHH
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~ 42 (752)
-..|+|+|+.|||||||++.|...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999998644
No 269
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.16 E-value=0.17 Score=50.15 Aligned_cols=26 Identities=27% Similarity=0.219 Sum_probs=22.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
.-+.++|+|+.|||||||++.|+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45789999999999999999997653
No 270
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.16 E-value=0.14 Score=48.42 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=18.6
Q ss_pred eeEEEEEeCCCCChHHHHHHH
Q 004467 19 IRNMSVIAHVDHGKSTLTDSL 39 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~l 39 (752)
-..++++|+.|||||||+..+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 346899999999999999975
No 271
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.02 E-value=0.19 Score=48.58 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=23.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
...++|+++|..||||||++..|....|
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3457899999999999999999976655
No 272
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.00 E-value=0.23 Score=47.97 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=24.9
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
+.+.+.|+|.|..||||||++..|....|
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35678999999999999999999976655
No 273
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=89.99 E-value=0.2 Score=47.87 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVA 41 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~ 41 (752)
..++++|+.|||||||+..|..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4689999999999999999964
No 274
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.93 E-value=0.2 Score=50.42 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=23.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCccccCCC
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD 53 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~ 53 (752)
-..++|+|+.|||||||+..| +|.+.. ..|+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l---~Gl~~p-~~G~ 58 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLL---ERFYQP-TAGE 58 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHH---TTSSCC-SBSC
T ss_pred CCEEEEECCCCCCHHHHHHHH---hcCCCC-CCcE
Confidence 357899999999999999998 555543 2454
No 275
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=89.92 E-value=0.19 Score=48.89 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=23.4
Q ss_pred cccCCeeEEEEEeCCCCChHHHHHHHHH
Q 004467 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVA 41 (752)
Q Consensus 14 ~~~~~iRni~iighvd~GKTTL~~~ll~ 41 (752)
........|+|+|..|||||||++.|..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445567899999999999999999854
No 276
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.84 E-value=0.17 Score=49.11 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVA 41 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~ 41 (752)
.+|+|+|..||||||++..|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998843
No 277
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.73 E-value=0.11 Score=49.44 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~ 42 (752)
..++|+|..|||||||++.|+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999644
No 278
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.72 E-value=0.2 Score=47.53 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=22.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
.++|.++|..|+||||++..|....|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999976555
No 279
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.67 E-value=0.11 Score=51.62 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=16.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHH
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLV 40 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll 40 (752)
-..++|+|+.|||||||+..|.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999996
No 280
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=89.56 E-value=0.18 Score=48.62 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~ 43 (752)
|-|.|+|+.|+|||||+++|+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 558999999999999999998663
No 281
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=89.53 E-value=0.18 Score=48.82 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVA 41 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~ 41 (752)
.+|+|+|..||||||++..|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4699999999999999999865
No 282
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.38 E-value=0.19 Score=49.92 Aligned_cols=25 Identities=36% Similarity=0.280 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIA 47 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~ 47 (752)
..++|+|+.|||||||+..| +|.+.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l---~Gl~~ 55 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYIL---GLLDA 55 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHH---TTSSC
T ss_pred CEEEEECCCCCCHHHHHHHH---hcCCC
Confidence 46899999999999999988 45543
No 283
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.31 E-value=0.18 Score=50.48 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=21.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCc
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIA 47 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~ 47 (752)
-..++|+|+.|||||||+..| +|.+.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l---~Gl~~ 56 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNII---GCLDK 56 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHH---TTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHH---hcCCC
Confidence 357899999999999999988 45443
No 284
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.24 E-value=0.12 Score=49.69 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
.+.|+|.|..||||||++..|....|
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999976655
No 285
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.20 E-value=0.24 Score=49.73 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=23.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGI 45 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~ 45 (752)
..-..|||+|+.|||||||+..|....|.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 34467999999999999999999765553
No 286
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=89.19 E-value=0.23 Score=48.91 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g 44 (752)
.+|+|+|+.||||||++..|....|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999998865544
No 287
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=89.02 E-value=0.2 Score=48.63 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=22.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
.-+.|+++|..|||||||++.|....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45789999999999999999997665
No 288
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=88.90 E-value=0.22 Score=46.83 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVA 41 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~ 41 (752)
+.|.+.|..||||||++..|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999965
No 289
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=88.85 E-value=0.27 Score=49.53 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=23.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
.+...|+|.|.++|||||++..|-...|
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457899999999999999999876656
No 290
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=88.80 E-value=0.27 Score=51.46 Aligned_cols=27 Identities=30% Similarity=0.174 Sum_probs=22.7
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
...-..|||+|+.|||||||+..|...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 355678999999999999999998543
No 291
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=88.78 E-value=0.37 Score=48.29 Aligned_cols=29 Identities=14% Similarity=0.036 Sum_probs=24.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGI 45 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~ 45 (752)
.+..+|+|.|.+||||||++..|....|.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~ 55 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCY 55 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45678999999999999999999766553
No 292
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=88.75 E-value=0.24 Score=51.97 Aligned_cols=28 Identities=25% Similarity=0.167 Sum_probs=23.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
.+...|||+|+.|||||||+..|....+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4456899999999999999999865543
No 293
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=88.73 E-value=0.22 Score=47.22 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=21.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
.-++++++|+.|+|||||+.++...
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998644
No 294
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.60 E-value=0.28 Score=51.07 Aligned_cols=28 Identities=25% Similarity=0.235 Sum_probs=23.3
Q ss_pred ccCCeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 15 ~~~~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
....-..++|+|+.|+|||||+..|+..
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 3455678999999999999999999643
No 295
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.58 E-value=0.22 Score=53.19 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIA 47 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~ 47 (752)
-.++|+|+.|||||||+..| +|.+.
T Consensus 31 e~~~llGpsGsGKSTLLr~i---aGl~~ 55 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCL---AGFEQ 55 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHH---HTSSC
T ss_pred CEEEEECCCCchHHHHHHHH---hcCCC
Confidence 46899999999999999988 45443
No 296
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=88.57 E-value=0.27 Score=47.31 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=21.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcC
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g 44 (752)
+|+|.|..||||||++..|....|
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999976555
No 297
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.43 E-value=0.25 Score=49.67 Aligned_cols=22 Identities=14% Similarity=0.225 Sum_probs=20.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHH
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSL 39 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~l 39 (752)
+. ..++|+|+.|||||||+..|
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l 44 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELI 44 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHH
T ss_pred CC-EEEEEECCCCCCHHHHHHHH
Confidence 45 78999999999999999998
No 298
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.40 E-value=0.22 Score=48.92 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~ 42 (752)
-.++|+|+.|||||||+..|...
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998543
No 299
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.35 E-value=0.35 Score=45.87 Aligned_cols=26 Identities=19% Similarity=0.228 Sum_probs=22.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
-.+|+++|..||||||++..|....|
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999975555
No 300
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=88.34 E-value=0.27 Score=46.77 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~ 43 (752)
+.|+|.|..|+||||++..|....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999996544
No 301
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.34 E-value=0.29 Score=47.77 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCC
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGI 45 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~ 45 (752)
+|+|.|.+||||||++..|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999766553
No 302
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=88.31 E-value=0.29 Score=47.81 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=21.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCC
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGI 45 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~ 45 (752)
+|+|.|.+||||||++..|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999766553
No 303
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=88.31 E-value=0.35 Score=46.03 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=22.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
..+.|.+.|..||||||++..|....|
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999976554
No 304
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=88.28 E-value=0.32 Score=46.35 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=21.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
+..+|+++|..|+||||++..|-..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999988665
No 305
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=88.20 E-value=0.32 Score=46.31 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=22.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
.+.|++.|..||||||++..|....|
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999976655
No 306
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=88.20 E-value=0.46 Score=49.16 Aligned_cols=27 Identities=11% Similarity=-0.065 Sum_probs=22.6
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
..+...|+|+|.+|||||||+..|...
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999988543
No 307
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=88.16 E-value=0.24 Score=49.34 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCChHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSL 39 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~l 39 (752)
..++|+|+.|||||||+..|
T Consensus 35 e~~~i~G~nGsGKSTLl~~l 54 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMI 54 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 308
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=88.15 E-value=0.31 Score=46.09 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=23.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
+.++|.|.|..|+||||++..|....|
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999965544
No 309
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.13 E-value=0.27 Score=47.41 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHH
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~ 42 (752)
.++|+|+.|+|||||+..|...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4899999999999999998654
No 310
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.08 E-value=0.24 Score=50.26 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=18.7
Q ss_pred eEEEEEeCCCCChHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSL 39 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~l 39 (752)
-.++|+|+.|||||||+..|
T Consensus 34 e~~~liG~nGsGKSTLlk~l 53 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVI 53 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 311
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.05 E-value=0.4 Score=48.73 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=21.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHH
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVA 41 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~ 41 (752)
..-..++|+|+.|||||||+..|+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHH
Confidence 4456899999999999999999864
No 312
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.05 E-value=0.25 Score=49.55 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCChHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSL 39 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~l 39 (752)
..++|+|+.|||||||+..|
T Consensus 32 e~~~i~G~nGsGKSTLl~~l 51 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSAL 51 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 313
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=88.01 E-value=0.25 Score=47.97 Aligned_cols=25 Identities=24% Similarity=0.109 Sum_probs=21.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
+-+.|+|.|..||||||++..|-..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999644
No 314
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=87.97 E-value=0.26 Score=49.77 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLV 40 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll 40 (752)
..++|+|+.|||||||+..|.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~ 50 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILA 50 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999984
No 315
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=87.91 E-value=0.25 Score=50.34 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIA 47 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~ 47 (752)
..++|+|+.|||||||+..| +|.+.
T Consensus 33 e~~~liG~nGsGKSTLlk~l---~Gl~~ 57 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCI---NFLEK 57 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHH---TTSSC
T ss_pred CEEEEECCCCCCHHHHHHHH---hcCCC
Confidence 46899999999999999988 45443
No 316
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=87.88 E-value=0.32 Score=45.72 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g 44 (752)
+.|.++|..||||||++..|....+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999976543
No 317
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=87.83 E-value=0.29 Score=46.10 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g 44 (752)
++|+|+|..||||||++..|....|
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3799999999999999999966554
No 318
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=87.80 E-value=0.43 Score=45.27 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=22.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
.+.|++.|..||||||++..|....|
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999976555
No 319
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=87.78 E-value=0.085 Score=55.91 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=44.7
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecch------------hHH-------HHHHH---hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------GVC-------MYASK---FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~------------Gv~-------~~~~~---~~~p~~~~inkld 154 (752)
+..+.+.||.|+..|-.-.....+.++++|+|+|.++ -.. ..+.. .++|+++|.||.|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 6789999999999988877778889999999999972 111 22221 3577888889888
No 320
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.70 E-value=0.27 Score=49.39 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIA 47 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~ 47 (752)
..++|+|+.|||||||+..| +|.+.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l---~Gl~~ 57 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAI---AGLVR 57 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHH---TTSSC
T ss_pred CEEEEECCCCCCHHHHHHHH---hCCCC
Confidence 46899999999999999988 45543
No 321
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=87.69 E-value=0.26 Score=50.58 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=18.5
Q ss_pred eEEEEEeCCCCChHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSL 39 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~l 39 (752)
-.++|+|+.|||||||+..|
T Consensus 35 e~~~iiGpnGsGKSTLl~~l 54 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNF 54 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 322
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=87.65 E-value=0.25 Score=48.66 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIA 47 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~ 47 (752)
..++|+|+.|||||||+..| +|.+.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l---~Gl~~ 60 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTI---STYLK 60 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHH---TTSSC
T ss_pred CEEEEECCCCCCHHHHHHHH---hcCCC
Confidence 46899999999999999998 45543
No 323
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=87.58 E-value=0.34 Score=45.17 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=22.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
...||+|.|..||||||++..|-...|
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356999999999999999998865555
No 324
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=87.58 E-value=0.34 Score=45.83 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcC
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g 44 (752)
..+|+|+.|+|||||+++|.+..+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 568999999999999999977654
No 325
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.55 E-value=0.27 Score=49.55 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIA 47 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~ 47 (752)
..++|+|+.|||||||+..| +|.+.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l---~Gl~~ 60 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLI---QRFYI 60 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHH---TTSSC
T ss_pred CEEEEECCCCCCHHHHHHHH---hcCCC
Confidence 46899999999999999998 45543
No 326
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=87.53 E-value=0.35 Score=48.85 Aligned_cols=28 Identities=21% Similarity=0.181 Sum_probs=23.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcCC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGI 45 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g~ 45 (752)
.-.+|+|+|+.|||||||+..|....|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3458999999999999999999765554
No 327
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=87.50 E-value=0.34 Score=46.97 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=21.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHH
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVA 41 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~ 41 (752)
.+...|+|+|..|||||||+..|..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999998865
No 328
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=87.44 E-value=0.092 Score=56.96 Aligned_cols=58 Identities=9% Similarity=0.031 Sum_probs=45.1
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecch------------hHH-------HHHHH---hCCCHHHHHHHhh
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE------------GVC-------MYASK---FGVDESKMMERLW 154 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~------------Gv~-------~~~~~---~~~p~~~~inkld 154 (752)
+..+.+.||.|+..|..-.....+.+|++|+|+|.++ -.. ..+.. .++|+++|.||.|
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence 5789999999999998877778889999999999987 111 11111 2577888889988
No 329
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.43 E-value=0.32 Score=50.97 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=23.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
+++..++|+|..|||||||++.|+..
T Consensus 2 ~~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 2 NPIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CCEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred CcccEEEEEecCCCCHHHHHHHHHhh
Confidence 35889999999999999999999754
No 330
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=87.40 E-value=0.28 Score=50.00 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIA 47 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~ 47 (752)
..++|+|+.|||||||+..| +|.+.
T Consensus 51 ei~~liG~NGsGKSTLlk~l---~Gl~~ 75 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCL---NLLED 75 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHH---TTSSC
T ss_pred CEEEEEcCCCCcHHHHHHHH---HcCCC
Confidence 46899999999999999988 45443
No 331
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.38 E-value=0.28 Score=49.87 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIA 47 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~ 47 (752)
..++|+|+.|||||||+..| +|.+.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l---~Gl~~ 71 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLL---YRFYD 71 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHH---TTSSC
T ss_pred CEEEEECCCCCCHHHHHHHH---hccCC
Confidence 47899999999999999998 45554
No 332
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=87.36 E-value=0.24 Score=55.65 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=20.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHH
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLV 40 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll 40 (752)
.-.+++|+|+.|||||||+.+|+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHG
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999994
No 333
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.25 E-value=0.31 Score=48.57 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=20.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHH
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLV 40 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll 40 (752)
.-..++|+|+.|||||||+..|+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 34579999999999999999886
No 334
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.15 E-value=0.3 Score=49.61 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCChHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSL 39 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~l 39 (752)
-.++|+|+.|||||||+..|
T Consensus 42 ei~~l~G~NGsGKSTLlk~l 61 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRII 61 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 335
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=87.10 E-value=0.59 Score=48.22 Aligned_cols=27 Identities=11% Similarity=0.206 Sum_probs=23.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
.+.+.|.++|.+|||||||+..|....
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999997654
No 336
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=87.09 E-value=0.44 Score=47.02 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=26.4
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcCCC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGII 46 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g~i 46 (752)
..+.|.|.|+|++||||+|.+..|...-|..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~ 56 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFN 56 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence 3567889999999999999999998777753
No 337
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=87.06 E-value=0.55 Score=45.33 Aligned_cols=27 Identities=26% Similarity=0.117 Sum_probs=22.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
..-..|+|+|..|||||||+..|....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 446789999999999999999885443
No 338
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.00 E-value=0.31 Score=49.27 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCcc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ 48 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~ 48 (752)
..++|+|+.|||||||+..| +|.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l---~Gl~~p 52 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARM---AGMTSG 52 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHH---TTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHH---hCCCCC
Confidence 46899999999999999988 555544
No 339
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=86.99 E-value=0.47 Score=43.73 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=21.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
.-.+++++|+.|+|||||+..+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 5578999999999999999999654
No 340
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=86.95 E-value=0.31 Score=51.90 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=19.4
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLV 40 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll 40 (752)
..++++|+.|+|||||++.|+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHh
Confidence 478999999999999999996
No 341
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=86.86 E-value=0.33 Score=49.59 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLV 40 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll 40 (752)
-.++|+|+.|||||||+..|.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~ 67 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLA 67 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999983
No 342
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=86.85 E-value=0.31 Score=49.69 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCChHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSL 39 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~l 39 (752)
..++|+|+.|||||||+..|
T Consensus 34 e~~~liG~nGsGKSTLl~~i 53 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIV 53 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 47899999999999999998
No 343
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=86.77 E-value=0.42 Score=51.62 Aligned_cols=45 Identities=13% Similarity=0.364 Sum_probs=29.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCcc-----ccCCchhHhHhcce
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR-----MTDTRADEAERGIT 69 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~~-----~~D~~~~E~eRgiT 69 (752)
-.++|+|+.|||||||+..| +|.+. ..|+.. +.+..+.+..|.|.
T Consensus 48 e~~~llGpsGsGKSTLLr~i---aGl~~--~~G~I~i~G~~i~~~~~~~~rr~ig 97 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAF---LRLLN--TEGEIQIDGVSWDSITLEQWRKAFG 97 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHH---HTCSE--EEEEEEESSCBTTSSCHHHHHHTEE
T ss_pred CEEEEECCCCChHHHHHHHH---hCCCC--CCeEEEECCEECCcCChHHHhCCEE
Confidence 46899999999999999988 45544 245432 33334444455554
No 344
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=86.76 E-value=0.46 Score=50.68 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~ 42 (752)
-+++|+|+.|||||||+.+|+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 38999999999999999999643
No 345
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=86.74 E-value=0.43 Score=49.74 Aligned_cols=27 Identities=30% Similarity=0.175 Sum_probs=22.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
..-..|||+|+.|||||||+..|....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 445689999999999999999996543
No 346
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=86.66 E-value=0.33 Score=45.80 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=18.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
...|.+.|..||||||++..|-...|
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46799999999999999999865544
No 347
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=86.63 E-value=0.32 Score=46.13 Aligned_cols=25 Identities=12% Similarity=0.072 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g 44 (752)
+.|+|.|..||||||++..|....|
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999965443
No 348
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=86.56 E-value=0.33 Score=49.67 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIA 47 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~ 47 (752)
..++|+|+.|||||||+..| +|.+.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l---~Gl~~ 70 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALL---QNLYQ 70 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHH---TTSSC
T ss_pred CEEEEECCCCCCHHHHHHHH---hcCCC
Confidence 46899999999999999998 45443
No 349
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=86.55 E-value=0.47 Score=45.70 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=23.9
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
.....+|+|.|..|+||||++..|....|
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34456899999999999999999976555
No 350
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=86.51 E-value=0.37 Score=47.23 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=26.3
Q ss_pred HHHHHHhhc-ccCCeeEEEEEeCCCCChHHHHHHHHH
Q 004467 6 AEGLRRIMD-FKHNIRNMSVIAHVDHGKSTLTDSLVA 41 (752)
Q Consensus 6 ~~~~~~~~~-~~~~iRni~iighvd~GKTTL~~~ll~ 41 (752)
...+..++. -...-..++|+|+.|+|||||+..|..
T Consensus 11 ~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 11 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp CHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred ChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345555553 223446799999999999999999964
No 351
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=86.47 E-value=0.34 Score=49.88 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=18.5
Q ss_pred eEEEEEeCCCCChHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSL 39 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~l 39 (752)
-.++|+|+.|||||||+..|
T Consensus 48 e~~~liG~NGsGKSTLlk~l 67 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNIL 67 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 46899999999999999988
No 352
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=86.38 E-value=0.44 Score=46.04 Aligned_cols=26 Identities=15% Similarity=-0.074 Sum_probs=22.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
-+.|+|.|..||||||++..|....+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 36799999999999999999976544
No 353
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=86.35 E-value=0.82 Score=46.18 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=29.2
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecch
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~ 133 (752)
..|.+.+||||+..+ ..+..++..+|.+|+++.+..
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~ 178 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEK 178 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCT
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCCh
Confidence 357899999998653 456778889999999998864
No 354
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=86.29 E-value=0.45 Score=46.63 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=23.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
+..+|+++|..||||||++..|....|
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999976655
No 355
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=86.23 E-value=0.35 Score=48.97 Aligned_cols=25 Identities=40% Similarity=0.477 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIA 47 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~ 47 (752)
..++|+|+.|||||||++.| +|.+.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l---~Gl~~ 56 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLL---LGIHR 56 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHH---TTSSC
T ss_pred CEEEEECCCCCCHHHHHHHH---hCCCC
Confidence 46899999999999999998 45443
No 356
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=86.20 E-value=0.33 Score=51.89 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHH
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLV 40 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll 40 (752)
.-.+++|+|+.|||||||++.|+
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~ 196 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALM 196 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHH
Confidence 34589999999999999999995
No 357
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=86.17 E-value=0.38 Score=45.58 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g 44 (752)
.+|+|+|.+||||||++..|-...|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3599999999999999999966555
No 358
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=86.06 E-value=0.41 Score=46.06 Aligned_cols=24 Identities=13% Similarity=0.029 Sum_probs=21.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHH
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~ 42 (752)
-+.|+|.|..||||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999998654
No 359
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=85.94 E-value=0.47 Score=45.07 Aligned_cols=26 Identities=15% Similarity=0.103 Sum_probs=22.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
.+-.+|+++|..|+||||++..|...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34578999999999999999998544
No 360
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=85.92 E-value=0.41 Score=44.67 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g 44 (752)
++|+|.|..||||||++..|-...|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999966555
No 361
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=85.89 E-value=0.49 Score=43.94 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=21.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcC
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g 44 (752)
+|+|.|..||||||++..|-...|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999966544
No 362
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=85.82 E-value=0.4 Score=45.58 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=19.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHH
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~ 42 (752)
.|++.|..||||||++..|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998654
No 363
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=85.82 E-value=0.49 Score=47.76 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g 44 (752)
+.|+|+|..|||||||+..|....+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999976655
No 364
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=85.81 E-value=0.43 Score=43.97 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHc
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~ 43 (752)
..+|+|+.|+|||||+++|.+..
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999997644
No 365
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=85.70 E-value=0.25 Score=48.09 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHH
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~ 42 (752)
.|+|.|..||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999654
No 366
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=85.65 E-value=0.49 Score=48.65 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=22.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
.+.+.|+|.|.+||||||++..|- ..|
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~lg 99 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NLG 99 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HCC
Confidence 346789999999999999999886 444
No 367
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=85.64 E-value=0.46 Score=46.04 Aligned_cols=25 Identities=28% Similarity=0.153 Sum_probs=21.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
+-+.|+|.|..||||||+++.|...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999644
No 368
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=85.62 E-value=0.48 Score=46.36 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=20.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHH
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVA 41 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~ 41 (752)
...|+|.|..||||||++..|-.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998854
No 369
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=85.45 E-value=0.54 Score=45.87 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=21.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcC
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g 44 (752)
+|+|.|..||||||++..|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999976555
No 370
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=85.43 E-value=0.5 Score=46.39 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=22.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
..+|.|+|..||||||++..|....|
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999976655
No 371
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=85.34 E-value=0.31 Score=51.42 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHH
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLV 40 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll 40 (752)
-.+++|+|+.|||||||++.|+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIM 192 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGG
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3589999999999999999984
No 372
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=85.28 E-value=0.44 Score=49.29 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIA 47 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~ 47 (752)
..++|+|+.|||||||+..| +|.+.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l---~Gl~~ 89 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMI---MGELE 89 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHH---TTSSC
T ss_pred CEEEEECCCCCcHHHHHHHH---hcCCC
Confidence 46899999999999999998 45443
No 373
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=85.10 E-value=0.56 Score=45.27 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=23.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
....+|++.|.++|||||++..|-...|
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3467899999999999999998865535
No 374
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=85.04 E-value=0.83 Score=42.72 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=22.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
...+++.+.|..|+|||||+.++...
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999654
No 375
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=84.87 E-value=0.5 Score=44.57 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=20.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHH
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~ 42 (752)
-..|++.|..||||||++..|-..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999988544
No 376
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=84.86 E-value=0.54 Score=45.98 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=22.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCC
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGII 46 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i 46 (752)
+|.|+|++||||+|.+..|...-|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~ 27 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFV 27 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCe
Confidence 57899999999999999998777754
No 377
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=84.85 E-value=0.45 Score=48.44 Aligned_cols=24 Identities=21% Similarity=0.520 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGII 46 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i 46 (752)
-.++|+|+.|||||||+..| +|.+
T Consensus 31 e~~~i~G~NGsGKSTLlk~l---~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAI---SGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHH---TTSS
T ss_pred EEEEEECCCCCCHHHHHHHH---hCCC
Confidence 36899999999999999998 4554
No 378
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=84.79 E-value=1.5 Score=37.11 Aligned_cols=65 Identities=22% Similarity=0.282 Sum_probs=48.6
Q ss_pred EEEEeecCCCCceeEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEe
Q 004467 289 VSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 364 (752)
Q Consensus 289 V~Kv~~~~~~g~~v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~ 364 (752)
|-.+|..+..|. +|=++|.+|.++++..++++..+ ..++.-++..|.. ...+|.++.+|.=|+|.
T Consensus 11 Vr~vF~isk~g~-IAGc~V~~G~i~r~~~vRv~Rd~------~vI~eG~i~SLkr----~KddV~EV~~G~ECGi~ 75 (99)
T 1d1n_A 11 VRQTFKVSKVGT-IAGCYVTDGKITRDSKVRLIRQG------IVVYEGEIDSLKR----YKDDVREVAQGYECGLT 75 (99)
T ss_dssp ECCCCCCSSSCC-CEEEEECSSBCCSSSEEEEECSS------SEEEEEECSEEEC----SSSCCSCCBTTCEEEEE
T ss_pred EEEEEEcCCceE-EEEEEEEcCEEEcCCeEEEEECC------EEEEEeEEhhhcc----cccccceECCCcEEEEE
Confidence 334444455676 99999999999999999998522 2355567777663 45679999999999985
No 379
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=84.70 E-value=0.5 Score=47.70 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=22.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
-++|+|+|..|+||||++..|....|
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999966555
No 380
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=84.70 E-value=0.51 Score=50.68 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
.-.+++|+|+.|||||||+..|+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3458999999999999999999643
No 381
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=84.66 E-value=0.48 Score=50.61 Aligned_cols=21 Identities=33% Similarity=0.344 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLV 40 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll 40 (752)
..++|+|+.|||||||+..|.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~ 75 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVN 75 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCchHHHHHHHHh
Confidence 468999999999999999883
No 382
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=84.27 E-value=0.89 Score=48.45 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=21.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHH
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~ 42 (752)
-..++++|+.|+|||||+..|...
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhh
Confidence 458999999999999999999654
No 383
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=84.27 E-value=0.59 Score=44.55 Aligned_cols=22 Identities=23% Similarity=0.099 Sum_probs=19.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHH
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~ 42 (752)
.|++.|..||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999654
No 384
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=84.17 E-value=0.67 Score=45.93 Aligned_cols=28 Identities=14% Similarity=0.044 Sum_probs=23.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
.+..+|.++|..|+||||++..|-...|
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4457899999999999999999976655
No 385
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=83.93 E-value=0.65 Score=46.75 Aligned_cols=28 Identities=11% Similarity=0.010 Sum_probs=23.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
.....|.++|.+||||||++..|....+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3457899999999999999999976654
No 386
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=83.72 E-value=0.5 Score=46.87 Aligned_cols=24 Identities=13% Similarity=0.200 Sum_probs=20.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHH
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLV 40 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll 40 (752)
.+-..|+|.|..|||||||+..|.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~ 41 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFE 41 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTG
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999884
No 387
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=83.71 E-value=0.73 Score=45.76 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=23.8
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
..+..+|+|+|..|+||||++..|....|
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34567899999999999999999876555
No 388
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=83.65 E-value=0.64 Score=47.54 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=22.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
.+.++++|+.|+|||||+.+|....+
T Consensus 44 ~~GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 44 PAGVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 45699999999999999999976544
No 389
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=83.50 E-value=0.78 Score=46.41 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHH
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~ 42 (752)
...|.++|..||||||++..|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999654
No 390
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=83.43 E-value=0.96 Score=43.44 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~ 43 (752)
+++.|.|.+|+|||||+.++....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 899999999999999999986543
No 391
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=83.33 E-value=0.37 Score=50.23 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCChHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSL 39 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~l 39 (752)
..++|+|+.|||||||+..|
T Consensus 81 e~vaivG~sGsGKSTLl~ll 100 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLL 100 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHH
Confidence 57899999999999999988
No 392
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=83.27 E-value=0.79 Score=47.62 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=21.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHH
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~ 42 (752)
-..++++|+.|+|||||+..|...
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999654
No 393
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=83.22 E-value=0.65 Score=50.61 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=25.5
Q ss_pred HHHHhhcccCCeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 8 GLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 8 ~~~~~~~~~~~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
.+..++. ..--.++|+|+.|||||||+.+|+...
T Consensus 158 ~L~~l~~--~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 158 NFRRLIK--RPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HHHHHHT--SSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHH--hcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 3455542 334579999999999999999997553
No 394
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=83.22 E-value=0.14 Score=52.91 Aligned_cols=53 Identities=19% Similarity=0.167 Sum_probs=37.3
Q ss_pred EEcCCCCc-ccHHHHHHHHHhhcceEEEEecchhHH---HHHHH--hCCCHHHHHHHhh
Q 004467 102 LIDSPGHV-DFSSEVTAALRITDGALVVVDCIEGVC---MYASK--FGVDESKMMERLW 154 (752)
Q Consensus 102 liDtPGh~-df~~e~~~~l~~~D~avlvvda~~Gv~---~~~~~--~~~p~~~~inkld 154 (752)
+=+-|||. .+..++...+..+|+++.|+||..+.. ....+ .+.|+++++||+|
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~D 61 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKAD 61 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGG
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHHCCCCEEEEEECcc
Confidence 33579997 567789999999999999999998765 12222 3688888889988
No 395
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=83.10 E-value=0.61 Score=49.64 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIA 47 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~ 47 (752)
-.++|+|+.|||||||+..| +|.+.
T Consensus 42 e~~~llGpnGsGKSTLLr~i---aGl~~ 66 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLI---AGLER 66 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHH---HTSSC
T ss_pred CEEEEECCCCCcHHHHHHHH---hCCCC
Confidence 46899999999999999988 45443
No 396
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=83.02 E-value=1 Score=48.32 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=23.5
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
...-+.++|+|++|+|||||+..|....
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4456789999999999999999997543
No 397
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=83.02 E-value=1 Score=44.11 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=22.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
..+++.|.|+.|+|||||+.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999996543
No 398
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=82.94 E-value=0.62 Score=49.67 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIA 47 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~ 47 (752)
-.++|+|+.|||||||+..| +|.+.
T Consensus 30 e~~~llGpnGsGKSTLLr~i---aGl~~ 54 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLML---AGIYK 54 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHH---HTSSC
T ss_pred CEEEEEcCCCchHHHHHHHH---HCCCC
Confidence 46899999999999999988 45443
No 399
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=82.88 E-value=1.8 Score=46.36 Aligned_cols=36 Identities=22% Similarity=0.164 Sum_probs=29.7
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecch
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~ 133 (752)
..|.+.+||||. .+...+..++..||.+++|+.+..
T Consensus 258 ~~yD~VIID~p~--~~~~~~~~~l~~aD~vivv~~~~~ 293 (373)
T 3fkq_A 258 DNYDEIIVDLPF--SLEIEKLKLLSKAWRIIVVNDGSQ 293 (373)
T ss_dssp SCCSEEEEECCC--CCCHHHHHHHTTCSEEEEEECCCH
T ss_pred CCCCEEEEeCCC--CCCHHHHHHHHHCCEEEEEecCCc
Confidence 368899999994 444577888999999999998875
No 400
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=82.73 E-value=0.83 Score=48.20 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=22.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g 44 (752)
+.|+|+|+.++|||||+..|....+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 6899999999999999999976654
No 401
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=82.73 E-value=0.74 Score=46.15 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=21.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
.+++.++|+.|+|||||+.+|....
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999996543
No 402
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=82.71 E-value=0.77 Score=45.78 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=22.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
...|+|.|+.|+||||++..|....|
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999976555
No 403
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=82.69 E-value=1.6 Score=43.61 Aligned_cols=69 Identities=19% Similarity=0.169 Sum_probs=54.6
Q ss_pred EeeEEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhhcCchHHhhhhCCCceeee
Q 004467 635 LEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQ 705 (752)
Q Consensus 635 lEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 705 (752)
----|++.|.+|.++.|++++.|.+ -|.|..++-.++ +.+.+.+.+|-.---.+...|++.|.|+|...
T Consensus 181 ~ra~m~l~v~ip~~~~~~~~~~l~~-~~~v~~ee~~~d-gs~~~v~~i~pg~~~~~~~~v~~~tkG~~~~~ 249 (252)
T 2wbm_A 181 KFEKVRVAIKIPGEMAGSAYGVISN-FGKITNEEWQND-GSWIAVVEIPGGLQDSFYQKLSELTGGNVETR 249 (252)
T ss_dssp EECEEEEEEEECGGGHHHHHHHHHH-HCEEEEEEECTT-SCEEEEEEEEGGGHHHHHHHHHHHTTTCCEEE
T ss_pred eEeeEEEEEEEcHHHHHHHHHHHHh-hCeeeeecccCC-CcEEEEEEECCccHHHHHHHHHHhcCCeEEEE
Confidence 3356899999999999999999954 488877665432 34677789998866678899999999999754
No 404
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=82.68 E-value=0.6 Score=49.85 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=21.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
...++|+|+.|||||||+..|....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999996543
No 405
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=82.68 E-value=0.86 Score=44.46 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=26.1
Q ss_pred HHHHhhcccCCeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 8 GLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 8 ~~~~~~~~~~~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
.++...+...+-+++.+.|++|+||||++.+|....
T Consensus 47 ~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 47 ALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 344444433334579999999999999999996553
No 406
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=82.66 E-value=0.86 Score=44.52 Aligned_cols=37 Identities=8% Similarity=0.087 Sum_probs=26.9
Q ss_pred HHHHHHhhc-ccCCeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 6 AEGLRRIMD-FKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 6 ~~~~~~~~~-~~~~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
...+..++. ....-..++|+|+.|+|||||+..|...
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 345556553 2334468999999999999999998643
No 407
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=82.65 E-value=0.79 Score=45.11 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=21.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcC
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g 44 (752)
+|+|.|..||||||++..|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999976555
No 408
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=82.57 E-value=0.65 Score=49.57 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIA 47 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~ 47 (752)
..++|+|+.|||||||+..| +|.+.
T Consensus 30 e~~~llGpnGsGKSTLLr~i---aGl~~ 54 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTI---AGIYK 54 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHH---HTSSC
T ss_pred CEEEEECCCCchHHHHHHHH---hcCCC
Confidence 46899999999999999988 45443
No 409
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=82.52 E-value=0.78 Score=44.11 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcC
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g 44 (752)
.|+|.|..||||||++..|-...|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999966555
No 410
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=82.33 E-value=0.67 Score=49.67 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIA 47 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~ 47 (752)
..++|+|+.|||||||+..| +|.+.
T Consensus 30 e~~~llGpnGsGKSTLLr~i---aGl~~ 54 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMI---AGLEE 54 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHH---HTSSC
T ss_pred CEEEEECCCCcHHHHHHHHH---HcCCC
Confidence 46899999999999999988 45543
No 411
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=82.14 E-value=0.69 Score=49.57 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIA 47 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~ 47 (752)
..++|+|+.|||||||+..| +|.+.
T Consensus 38 e~~~llGpnGsGKSTLLr~i---aGl~~ 62 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMI---AGLEE 62 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHH---HTSSC
T ss_pred CEEEEECCCCChHHHHHHHH---HcCCC
Confidence 57899999999999999988 45443
No 412
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=82.12 E-value=0.69 Score=49.66 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIA 47 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~ 47 (752)
-.++|+|+.|||||||+..| +|.+.
T Consensus 30 e~~~llGpsGsGKSTLLr~i---aGl~~ 54 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMI---AGLET 54 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHH---HTSSC
T ss_pred CEEEEEcCCCchHHHHHHHH---HcCCC
Confidence 46899999999999999988 45543
No 413
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=81.87 E-value=0.94 Score=48.03 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=22.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
..+.+|+++|..|+||||+...|....
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 457899999999999999999885443
No 414
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=81.57 E-value=0.96 Score=44.21 Aligned_cols=25 Identities=24% Similarity=0.330 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g 44 (752)
.+|+++|..||||||++..|-...|
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999976555
No 415
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=81.56 E-value=0.76 Score=49.14 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=19.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHH
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~ 42 (752)
-++|+|+.|||||||.++|.+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4669999999999999999655
No 416
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=81.31 E-value=0.83 Score=44.44 Aligned_cols=26 Identities=23% Similarity=0.134 Sum_probs=22.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
..-..|+++|..|+||||++..|...
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 44578999999999999999998543
No 417
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=81.30 E-value=1.1 Score=41.89 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=22.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
...+++.|.|..|+|||||+..+...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 44678999999999999999999654
No 418
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=80.97 E-value=0.48 Score=48.99 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=18.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
+...|+|.|.+||||||++..|...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999654
No 419
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=80.89 E-value=0.95 Score=46.11 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=21.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
.+.+.|+|+.|+|||||+.+|....
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCcChHHHHHHHHHHHc
Confidence 3569999999999999999996543
No 420
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=80.86 E-value=1.4 Score=42.67 Aligned_cols=36 Identities=17% Similarity=0.008 Sum_probs=27.8
Q ss_pred HHHHHHhhc-ccCCeeEEEEEeCCCCChHHHHHHHHH
Q 004467 6 AEGLRRIMD-FKHNIRNMSVIAHVDHGKSTLTDSLVA 41 (752)
Q Consensus 6 ~~~~~~~~~-~~~~iRni~iighvd~GKTTL~~~ll~ 41 (752)
...|..++. -...-..++|+|+.|+|||||+..|..
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 445666664 344456789999999999999999976
No 421
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=80.48 E-value=0.82 Score=50.50 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=21.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
.-..++|+|+.|||||||+..|...
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 3456999999999999999998543
No 422
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=80.47 E-value=1.4 Score=42.75 Aligned_cols=35 Identities=11% Similarity=0.082 Sum_probs=25.1
Q ss_pred HHHhhcccCCeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 9 ~~~~~~~~~~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
+...+......+.+.|.|+.|+|||||+..+....
T Consensus 35 l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 35 LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp HHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33333333334579999999999999999997554
No 423
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=80.46 E-value=0.54 Score=49.91 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIA 47 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~ 47 (752)
-.++|+|+.|||||||++.| +|.+.
T Consensus 27 e~~~llGpnGsGKSTLLr~i---aGl~~ 51 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELI---AGFHV 51 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHH---HTSSC
T ss_pred CEEEEECCCCccHHHHHHHH---HcCCC
Confidence 46899999999999999988 45543
No 424
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C
Probab=80.29 E-value=1.9 Score=42.67 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=53.8
Q ss_pred eEEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhhcCchHHhhhhCCCceeeee
Q 004467 637 PVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQC 706 (752)
Q Consensus 637 Pi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 706 (752)
--|++.|.+|.++.|++++.|. .-|.|..++-.+. +.+...+.+|-.---.+...|++.|+|+|....
T Consensus 168 a~m~~~v~vp~~~~~~~~~~l~-~~~~v~~ee~~~d-gs~~~v~~Ippg~~~~~~~~l~~~tkG~~~~~v 235 (240)
T 1t95_A 168 EEMEIAIKIPPEHTGRAISALY-NFGGVTREEWQRD-GSWICVMRIPSGMYGDLMDLLGKVAKGEALTKV 235 (240)
T ss_dssp CEEEEEEEECGGGHHHHHHHHH-HHCCEEEEEECTT-SCEEEEEEEEGGGHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEEEEcHHHHHHHHHHHH-hhCeeeeecccCC-CcEEEEEEECCccHHHHHHHHHHhcCCeEEEEE
Confidence 4588999999999999999994 4578877765432 356677899987666778999999999997654
No 425
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=80.21 E-value=0.11 Score=54.70 Aligned_cols=36 Identities=8% Similarity=0.137 Sum_probs=30.9
Q ss_pred ceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecc
Q 004467 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCI 132 (752)
Q Consensus 97 ~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~ 132 (752)
+..+.+.||.|+..|-.-.....+.++++|+|+|.+
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls 201 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS 201 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGG
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECc
Confidence 688999999999888776666778899999999765
No 426
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=79.62 E-value=1.4 Score=44.90 Aligned_cols=27 Identities=11% Similarity=0.226 Sum_probs=23.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
...+++.+.|++|+|||||+.++....
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456889999999999999999996543
No 427
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=79.38 E-value=1.1 Score=44.86 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=21.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
.+++.+.|++|+|||||+.+|....
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 5689999999999999999996544
No 428
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=79.21 E-value=1.5 Score=43.54 Aligned_cols=28 Identities=11% Similarity=0.032 Sum_probs=23.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
.+-..|+|.|..||||||+++.|....+
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4567899999999999999999966543
No 429
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=79.21 E-value=1 Score=47.34 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=22.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
...+++++|++|+|||||+..|....+
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 346799999999999999999976654
No 430
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=79.11 E-value=5.1 Score=41.76 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
..++|.+.|++|+|||+|+.++....
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 35899999999999999999996554
No 431
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=79.10 E-value=1.6 Score=44.91 Aligned_cols=34 Identities=15% Similarity=0.003 Sum_probs=25.2
Q ss_pred HHHhhcccCCeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 9 ~~~~~~~~~~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
|..+.-....-..++|+|+.|+|||||+..|...
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4444433344567999999999999999988543
No 432
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=78.97 E-value=1.1 Score=51.22 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=19.1
Q ss_pred eeEEEEEeCCCCChHHHHHHH
Q 004467 19 IRNMSVIAHVDHGKSTLTDSL 39 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~l 39 (752)
-..++|+|+.|||||||+..|
T Consensus 381 G~~~~ivG~sGsGKSTll~~l 401 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLL 401 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHH
Confidence 357899999999999999988
No 433
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=78.91 E-value=1.5 Score=45.36 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=23.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
...++|.+.|++|+|||||+.+|....
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 446789999999999999999996554
No 434
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=78.87 E-value=1.5 Score=45.52 Aligned_cols=28 Identities=14% Similarity=0.126 Sum_probs=23.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
...+.|+|+|+.++|||||+..|....+
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 3456789999999999999999976654
No 435
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=78.86 E-value=1.1 Score=51.28 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIA 47 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~ 47 (752)
..++|+|+.|||||||++.| .|.+.
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l---~g~~~ 395 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLL---LRLYD 395 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHH---TTSSC
T ss_pred CEEEEECCCCCCHHHHHHHH---hcCcC
Confidence 47899999999999999998 45443
No 436
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=78.47 E-value=0.6 Score=49.71 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=21.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCCCc
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIA 47 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~i~ 47 (752)
-..++|+|+.|||||||+..| +|.+.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~i---aGl~~ 56 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRII---AGLDV 56 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHH---HTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHH---hCCCC
Confidence 357899999999999999988 45443
No 437
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=78.43 E-value=1.1 Score=43.37 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g 44 (752)
...+|+|+.|+||||++++|.+..+
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4568999999999999999976554
No 438
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=78.32 E-value=1.1 Score=49.74 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~ 42 (752)
..++|+|+.|||||||+..|...
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 68999999999999999998643
No 439
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=77.96 E-value=3.4 Score=42.62 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=22.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
..+++.|.|..|+|||||+.++....
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999996543
No 440
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=77.77 E-value=0.98 Score=51.46 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=18.8
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLV 40 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll 40 (752)
..++|+|+.|||||||+..|+
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~ 388 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIP 388 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTT
T ss_pred CEEEEECCCCChHHHHHHHHh
Confidence 468999999999999999883
No 441
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=77.63 E-value=1.2 Score=45.80 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~ 42 (752)
+.|.+.|..||||||++..|...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999653
No 442
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=77.34 E-value=1.4 Score=46.68 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=20.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHH
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~ 42 (752)
=-.++|+|+.|+|||||+..|...
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999654
No 443
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=77.17 E-value=1.2 Score=46.93 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~ 43 (752)
...+|+|+.|+|||||++++.+..
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 345899999999999999986543
No 444
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=77.08 E-value=1.4 Score=43.45 Aligned_cols=37 Identities=11% Similarity=0.213 Sum_probs=27.5
Q ss_pred HHHHHHhhc-ccCCeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 6 AEGLRRIMD-FKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 6 ~~~~~~~~~-~~~~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
...|..++. -...-..++|+|+.|+|||||+..|...
T Consensus 10 ~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 10 SKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp CHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred ChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 345666663 2334468999999999999999999754
No 445
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=77.07 E-value=1.6 Score=45.67 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=22.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g 44 (752)
++|+|+|..++|||||+..|....+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999976654
No 446
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=76.88 E-value=0.61 Score=47.17 Aligned_cols=59 Identities=19% Similarity=0.005 Sum_probs=36.6
Q ss_pred CceEEEEEcCCCCcccHHHHHHHHHhhcceEEEEecchh----HH---HHHHHhCCCHH-HHHHHhh
Q 004467 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG----VC---MYASKFGVDES-KMMERLW 154 (752)
Q Consensus 96 ~~~~inliDtPGh~df~~e~~~~l~~~D~avlvvda~~G----v~---~~~~~~~~p~~-~~inkld 154 (752)
+.|.+.|||||+..........++..+|.+|+|+..... +. .++++.+++.+ +++|+.+
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~ 193 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSY 193 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCC
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCc
Confidence 468899999999765432223344579999999987653 22 33444556544 4455543
No 447
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=76.44 E-value=0.91 Score=45.89 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=20.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHH
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLV 40 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll 40 (752)
++.+.|+|.|..|+||||+++.|-
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999999884
No 448
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=76.09 E-value=1.6 Score=43.35 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
.+.|+|.|..|+||||+++.|....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3679999999999999999996554
No 449
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=75.95 E-value=1.5 Score=44.56 Aligned_cols=22 Identities=27% Similarity=0.226 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVA 41 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~ 41 (752)
+.++|+|+.|+|||||+..|+.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999999865
No 450
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=75.56 E-value=1.3 Score=50.54 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=18.8
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLV 40 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll 40 (752)
..++|+|+.|||||||+..|+
T Consensus 370 e~~~ivG~sGsGKSTll~~l~ 390 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIP 390 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999883
No 451
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=75.52 E-value=2 Score=44.74 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=26.6
Q ss_pred HHHhhcccC-CeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 9 LRRIMDFKH-NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 9 ~~~~~~~~~-~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
+..+...+. ..+++.|.|++|+|||||+.++....
T Consensus 26 ~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 26 VKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp HHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 444454443 56789999999999999999996543
No 452
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=75.42 E-value=1.4 Score=50.27 Aligned_cols=20 Identities=20% Similarity=0.499 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCChHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSL 39 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~l 39 (752)
..++|+|+.|||||||++.|
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l 389 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLI 389 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 453
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=75.26 E-value=1.4 Score=50.33 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=19.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHH
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLV 40 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll 40 (752)
-..++|+|+.|||||||++.|.
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~ 390 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFT 390 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999984
No 454
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=75.25 E-value=1.4 Score=49.80 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIA 47 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~ 47 (752)
..++++|+.|||||||+..| +|.+.
T Consensus 48 e~~~LvG~NGaGKSTLlk~l---~Gl~~ 72 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKIL---AGQLI 72 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHH---HTSSC
T ss_pred CEEEEECCCCCCHHHHHHHH---hCCCC
Confidence 57999999999999999998 45443
No 455
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=74.95 E-value=2.2 Score=44.97 Aligned_cols=26 Identities=12% Similarity=0.244 Sum_probs=22.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
...+++.|.|+.|+|||||+..+...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 44679999999999999999998654
No 456
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=74.91 E-value=1.8 Score=48.93 Aligned_cols=26 Identities=27% Similarity=0.172 Sum_probs=22.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
+-.+|+++|..|||||||+..|....
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 34689999999999999999986543
No 457
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=74.63 E-value=2.5 Score=40.43 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=21.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
..+++.+.|..|+|||||+..+...
T Consensus 37 ~~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 37 NIPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4456999999999999999999654
No 458
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=74.55 E-value=2.2 Score=40.41 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~ 42 (752)
+-|.|.|+.|+|||||+-.|+..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 56889999999999999999753
No 459
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=73.94 E-value=1.6 Score=49.19 Aligned_cols=31 Identities=23% Similarity=0.439 Sum_probs=23.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDV 54 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~ 54 (752)
-.++|+|+.|||||||+..| +|.+.. ..|++
T Consensus 313 e~~~i~G~NGsGKSTLlk~l---~Gl~~p-~~G~i 343 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKML---AGVEEP-TEGKI 343 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHH---HTSSCC-SBCCC
T ss_pred CEEEEECCCCCCHHHHHHHH---hCCCCC-CCeEE
Confidence 36899999999999999998 454433 24643
No 460
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=73.88 E-value=1.5 Score=45.87 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcC
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g 44 (752)
..+|+|..|+|||||+++|.+..|
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~llg 49 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWVFG 49 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTSC
T ss_pred cEEEECCCCCcHHHHHHHHHHHhC
Confidence 678999999999999999976654
No 461
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=73.87 E-value=1.8 Score=48.87 Aligned_cols=28 Identities=32% Similarity=0.376 Sum_probs=22.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcCCCc
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIA 47 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g~i~ 47 (752)
+.=..+|++|+.|||||||+..| +|.+.
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL---~Gl~~ 50 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKIL---AGEII 50 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHH---TTSSC
T ss_pred CCCCEEEEECCCCCcHHHHHHHH---hcCCC
Confidence 34467999999999999999998 45543
No 462
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=73.74 E-value=1.9 Score=47.17 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=23.9
Q ss_pred HHHhhcccCCeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 9 ~~~~~~~~~~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
|..++. ..+=-.++|+|+.|+|||||++.|...
T Consensus 148 ld~vl~-i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 148 INALLT-VGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp HHHHSC-CBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EeeeEE-ecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 444422 233446999999999999999988544
No 463
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=73.66 E-value=1.6 Score=49.24 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=20.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCc
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGIIA 47 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~i~ 47 (752)
.++|+|+.|||||||+..| +|.+.
T Consensus 296 i~~i~G~nGsGKSTLl~~l---~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARIL---VGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHH---TTSSC
T ss_pred EEEEECCCCCCHHHHHHHH---hCCCC
Confidence 5899999999999999999 45443
No 464
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=73.64 E-value=1.9 Score=41.80 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g 44 (752)
.+|+|.|..|+||||++..|....|
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4699999999999999998865545
No 465
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein mutation, phosphoprotein, ribosome biogenesis; NMR {Homo sapiens} PDB: 2l9n_A
Probab=73.46 E-value=0.83 Score=45.71 Aligned_cols=68 Identities=9% Similarity=-0.038 Sum_probs=56.5
Q ss_pred eeEEEEEEEecCcccccHHHHhhhhccccccccccCCCCcEEEEEEecchhhcCchHHhhhhCCCceeeee
Q 004467 636 EPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQC 706 (752)
Q Consensus 636 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 706 (752)
-.-|++.|++|.++.|++++.|.+-.|.|.+++-.+ + +.+.+.+|-.---.+.+.|++.|.|+|...+
T Consensus 171 ra~m~l~v~vp~~~~~~~~~~l~~~~~~v~~ee~~~--~-~~~v~~I~pg~~~~~~~~v~~~tkG~~~~ev 238 (252)
T 2kdo_A 171 RAHMRLRFILPVNEGKKLKEKLKPLIKVIESEDYGQ--Q-LEIVCLIDPGCFREIDELIKKETKGKGSLEV 238 (252)
T ss_dssp EECCCEEEECBHHHHHHHTTTHHHHTCEEEEECCSS--B-CCEEECCCGGGHHHHHHHHHHHTTTTSEEEE
T ss_pred eeeEEEEEEEcHHHHHHHHHHHHHhhCcceeeeccC--C-eEEEEEECCcchHHHHHHHHHhcCCCEEEEE
Confidence 346788999999999999999999889988776543 3 6778899988777889999999999997544
No 466
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=73.23 E-value=2.1 Score=41.51 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~ 42 (752)
+-|.|+|+.++|||||+-.|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999999643
No 467
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=73.22 E-value=2.2 Score=42.53 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=22.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
..+++.+.|++|+|||||+.++....
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999996544
No 468
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=72.98 E-value=2.2 Score=41.95 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=24.5
Q ss_pred HHHHhhc-ccCCeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 8 GLRRIMD-FKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 8 ~~~~~~~-~~~~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
.|..++. -...-..+.|+|+.|+|||||+-.++..
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3444443 1233457899999999999998888643
No 469
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=72.94 E-value=1.8 Score=49.61 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=19.1
Q ss_pred eeEEEEEeCCCCChHHHHHHH
Q 004467 19 IRNMSVIAHVDHGKSTLTDSL 39 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~l 39 (752)
=..++|+|+.|+|||||+..|
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL 123 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKIL 123 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHH
Confidence 347999999999999999988
No 470
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=72.86 E-value=2.3 Score=42.12 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCC
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGI 45 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~ 45 (752)
-.+|++|.+||||||++..|....|.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~ 34 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGI 34 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCC
Confidence 45899999999999999999776664
No 471
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=72.76 E-value=1.7 Score=47.31 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=22.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
..+.|.++|..||||||++.+|....|
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999965444
No 472
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=72.69 E-value=8 Score=33.90 Aligned_cols=53 Identities=13% Similarity=0.227 Sum_probs=41.8
Q ss_pred eEEEEEEeeeecCCCEEEEccCCCCCCCcccceeeeeeeEEEEecCceeeeccccCCCEEEEe
Q 004467 302 FAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 364 (752)
Q Consensus 302 v~~~RV~SGtL~~Gd~v~i~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~V~ea~AGdIvai~ 364 (752)
+|=++|.+|+++++..++++..+ ..++.-++..|. +...+|.++.+|.=|+|.
T Consensus 30 IAGC~V~~G~i~r~~~vRviRdg------~vI~eG~i~SLk----rfKdDVkEV~~G~ECGi~ 82 (120)
T 2crv_A 30 VADCRVQKGQLERHKKFKLIRNG------QVIWKGSLTSLK----HHKDDISVIKTGMDCGLS 82 (120)
T ss_dssp EEEEEEEESCEETTSCEEEEETT------EEEEEECCSEEE----SSSSCCSEECTTCEEEEE
T ss_pred EeEEEEEcCEEEcCCeEEEEECC------EEEEEeEehhhc----ccccccceecCCCEEEEE
Confidence 89999999999999999998522 234455666666 345679999999999985
No 473
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=72.59 E-value=7.6 Score=42.41 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.6
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
..++|.+.|++|+|||+|+.++....
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45899999999999999999996554
No 474
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=72.48 E-value=0.4 Score=47.65 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=18.9
Q ss_pred EEEEeCCCCChHHHHHHHHHHc
Q 004467 22 MSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 22 i~iighvd~GKTTL~~~ll~~~ 43 (752)
++|+|+.|||||||+++|....
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 4789999999999999996543
No 475
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=72.48 E-value=2.2 Score=43.68 Aligned_cols=26 Identities=12% Similarity=0.286 Sum_probs=22.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
..+++.+.|++|+|||||+.++....
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 35799999999999999999996544
No 476
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=72.44 E-value=2.7 Score=43.24 Aligned_cols=28 Identities=14% Similarity=0.111 Sum_probs=23.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
...+.+.+.|++|+|||+|+.++....|
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4467888999999999999999976654
No 477
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.37 E-value=2.1 Score=44.90 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=21.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHH
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVA 41 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~ 41 (752)
.+..++.|.|+.|+|||||+..|..
T Consensus 34 ~~~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 34 RDLPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp TCCCCEEEECSTTSSHHHHHHTHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3455699999999999999999866
No 478
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=72.23 E-value=1.8 Score=49.59 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIA 47 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~ 47 (752)
..++|+|+.|||||||+..| +|.+.
T Consensus 118 e~~~LiG~NGsGKSTLlkiL---~Gll~ 142 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKIL---AGQLI 142 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHH---TTSSC
T ss_pred CEEEEECCCCChHHHHHHHH---hCCCC
Confidence 57999999999999999988 55543
No 479
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=72.01 E-value=1.9 Score=49.35 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=23.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCCccccCCCc
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDV 54 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~~~g~i~~~~~g~~ 54 (752)
-.++|+|+.|+|||||+..| +|.+.. ..|++
T Consensus 383 ei~~i~G~NGsGKSTLlk~l---~Gl~~p-~~G~I 413 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKML---AGVEEP-TEGKV 413 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHH---HTSSCC-SBSCC
T ss_pred CEEEEECCCCCCHHHHHHHH---hcCCCC-CceEE
Confidence 36899999999999999998 454433 24643
No 480
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=71.86 E-value=2.3 Score=46.40 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=22.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcCC
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAGI 45 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g~ 45 (752)
-...+|+|+.|+|||||+++|.+..+.
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 356799999999999999999876653
No 481
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=71.65 E-value=2 Score=45.66 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=19.3
Q ss_pred EEEEEeCCCCChHHHHHHHHH
Q 004467 21 NMSVIAHVDHGKSTLTDSLVA 41 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~ 41 (752)
..+|+|+.|+|||||+++|.+
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 679999999999999999964
No 482
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=71.47 E-value=0.91 Score=49.18 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=21.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCC
Q 004467 21 NMSVIAHVDHGKSTLTDSLVAAAGI 45 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~ll~~~g~ 45 (752)
.++|+|+.|||||||+++|....+.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~~~ 86 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLLGG 86 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999776653
No 483
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=70.76 E-value=2.9 Score=37.81 Aligned_cols=25 Identities=12% Similarity=-0.028 Sum_probs=21.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHH
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVA 41 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~ 41 (752)
..-.+|.|.|..|+|||+|+.++-.
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999998843
No 484
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=70.66 E-value=2.7 Score=44.44 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=26.2
Q ss_pred HHHHhhc-ccCCeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 8 GLRRIMD-FKHNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 8 ~~~~~~~-~~~~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
.|..++. ....-+.++|+|+.|+|||||+..|....
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444443 22345789999999999999999997653
No 485
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=70.48 E-value=2.1 Score=48.92 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=17.9
Q ss_pred EEEEEeCCCCChHHHHHHH
Q 004467 21 NMSVIAHVDHGKSTLTDSL 39 (752)
Q Consensus 21 ni~iighvd~GKTTL~~~l 39 (752)
.++|+|+.|+|||||+..|
T Consensus 380 iv~iiG~NGsGKSTLlk~l 398 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLL 398 (608)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 4899999999999999988
No 486
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=70.40 E-value=3.6 Score=42.76 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=25.9
Q ss_pred HHHHhhcccCCeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 8 GLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 8 ~~~~~~~~~~~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
.+..+.+ ... +++.|.|..|.|||||+..+....
T Consensus 21 el~~L~~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 21 EIEKLKG-LRA-PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp HHHHHHH-TCS-SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHH-hcC-CcEEEECCCCCCHHHHHHHHHHhc
Confidence 3444444 434 799999999999999999997654
No 487
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=70.25 E-value=3 Score=44.00 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=22.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
...+++.|.|+.|+|||||+..+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 55689999999999999999999644
No 488
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=69.78 E-value=0.26 Score=50.20 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=33.8
Q ss_pred CCCcccH-HHHHHHHHhhcceEEEEecchhHHH---HHHHhCCCHHHHHHHhh
Q 004467 106 PGHVDFS-SEVTAALRITDGALVVVDCIEGVCM---YASKFGVDESKMMERLW 154 (752)
Q Consensus 106 PGh~df~-~e~~~~l~~~D~avlvvda~~Gv~~---~~~~~~~p~~~~inkld 154 (752)
|||.... .++...+..+|.++.|+||..+... ...-.++|.++++||+|
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~ll~k~~iivlNK~D 57 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVDFSRKETIILLNKVD 57 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSCCTTSEEEEEEECGG
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHHhcCCCcEEEEECcc
Confidence 8987655 5789999999999999999987551 00011778888889888
No 489
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=69.53 E-value=5 Score=40.64 Aligned_cols=37 Identities=8% Similarity=0.111 Sum_probs=27.5
Q ss_pred HHHHhhccc-CCeeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 8 GLRRIMDFK-HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 8 ~~~~~~~~~-~~iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
++...++.. .+...|.+.|++|+|||+|+.+|....+
T Consensus 92 ~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 92 VFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp HHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred HHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 345545443 3355799999999999999999977544
No 490
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=69.45 E-value=2.6 Score=47.27 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=20.5
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHH
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLV 40 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll 40 (752)
..-..++|+|+.|||||||+..++
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHH
Confidence 345689999999999999999863
No 491
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=69.08 E-value=2.7 Score=44.51 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=21.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
.+++.|.|+.|+|||||+..+....
T Consensus 44 ~~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 44 YPRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3599999999999999999997554
No 492
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=68.97 E-value=3.1 Score=43.25 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=21.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHH
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~ 42 (752)
-+.|.|.|+.|+|||||+..|+..
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 368999999999999999999764
No 493
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=68.93 E-value=3.1 Score=43.23 Aligned_cols=26 Identities=12% Similarity=0.164 Sum_probs=21.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
.+.|+|+|+.++|||||+..|....+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 35689999999999999999976544
No 494
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=68.91 E-value=3.5 Score=45.16 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=24.6
Q ss_pred HhhcccCCeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 11 RIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 11 ~~~~~~~~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
.+...+....++.|.|++|+|||||+.++...
T Consensus 122 ~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 122 EVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp HHHHSTTSSCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHhCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 33444433678999999999999999998644
No 495
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=68.74 E-value=2.6 Score=44.90 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 004467 20 RNMSVIAHVDHGKSTLTDSLVA 41 (752)
Q Consensus 20 Rni~iighvd~GKTTL~~~ll~ 41 (752)
.-.+|.|..|+|||||+|+|.+
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999976
No 496
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=68.73 E-value=3.6 Score=41.49 Aligned_cols=27 Identities=11% Similarity=0.214 Sum_probs=23.4
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 17 ~~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
...+++.+.|.+|+|||||+.++....
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 457899999999999999999996553
No 497
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=68.66 E-value=3.5 Score=40.31 Aligned_cols=25 Identities=24% Similarity=0.100 Sum_probs=21.2
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHH
Q 004467 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (752)
Q Consensus 18 ~iRni~iighvd~GKTTL~~~ll~~ 42 (752)
+-+.|+|.|..|+||||+++.|...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998543
No 498
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=68.54 E-value=3.5 Score=42.23 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=22.8
Q ss_pred cCCeeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 16 ~~~iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
.....++.+.|++|+|||||+.++....
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999875443
No 499
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=68.44 E-value=2.9 Score=43.98 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=21.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHc
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~ 43 (752)
.+.|+|+|+.++|||||+-.|....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3589999999999999999996443
No 500
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=68.07 E-value=2.7 Score=41.11 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=20.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHHcC
Q 004467 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (752)
Q Consensus 19 iRni~iighvd~GKTTL~~~ll~~~g 44 (752)
.--||+.|-++|||||++..|- ..|
T Consensus 9 ~~~iglTGgigsGKStv~~~l~-~~g 33 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFA-ARG 33 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH-HTT
T ss_pred eeEEEEECCCCCCHHHHHHHHH-HCC
Confidence 4579999999999999998774 355
Done!