Query 004468
Match_columns 751
No_of_seqs 563 out of 3153
Neff 9.0
Searched_HMMs 29240
Date Tue Mar 26 02:05:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004468.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004468hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 1.3E-40 4.4E-45 367.6 34.9 209 41-310 99-327 (410)
2 1got_B GT-beta; complex (GTP-b 100.0 2.4E-39 8.1E-44 348.1 38.5 213 40-310 45-257 (340)
3 2ynn_A Coatomer subunit beta'; 100.0 2.7E-39 9.1E-44 341.9 36.4 214 39-310 2-217 (304)
4 3iz6_a 40S ribosomal protein R 100.0 7.7E-40 2.6E-44 357.5 32.8 228 38-311 54-281 (380)
5 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.7E-39 5.8E-44 350.0 34.3 220 38-310 3-225 (345)
6 4ery_A WD repeat-containing pr 100.0 1.2E-38 4.2E-43 337.5 39.3 212 39-310 12-223 (312)
7 1nr0_A Actin interacting prote 100.0 9.6E-39 3.3E-43 371.2 38.5 277 40-334 137-504 (611)
8 3ow8_A WD repeat-containing pr 100.0 7.6E-39 2.6E-43 341.4 34.3 208 42-310 24-237 (321)
9 2pbi_B Guanine nucleotide-bind 100.0 2.3E-38 7.9E-43 342.5 38.1 217 40-310 54-271 (354)
10 4g56_B MGC81050 protein; prote 100.0 3.1E-38 1E-42 341.9 33.4 212 45-310 37-258 (357)
11 4gqb_B Methylosome protein 50; 100.0 2.8E-38 9.7E-43 340.2 32.1 208 47-310 27-246 (344)
12 3frx_A Guanine nucleotide-bind 100.0 1.3E-37 4.3E-42 331.5 35.6 212 38-310 5-227 (319)
13 1nr0_A Actin interacting prote 100.0 1.2E-37 4.2E-42 361.8 38.6 229 28-313 39-273 (611)
14 2hes_X YDR267CP; beta-propelle 100.0 3.2E-37 1.1E-41 330.0 34.0 224 38-310 2-230 (330)
15 1erj_A Transcriptional repress 100.0 4.9E-37 1.7E-41 336.9 33.2 208 48-310 62-287 (393)
16 2xzm_R RACK1; ribosome, transl 100.0 5.1E-36 1.7E-40 322.4 38.4 213 39-310 10-244 (343)
17 2ymu_A WD-40 repeat protein; u 100.0 2E-36 6.7E-41 348.4 37.5 238 27-333 242-479 (577)
18 4aow_A Guanine nucleotide-bind 100.0 8.5E-36 2.9E-40 318.2 36.4 223 29-310 17-246 (340)
19 2ymu_A WD-40 repeat protein; u 100.0 2.3E-35 7.7E-40 339.5 38.5 238 27-333 201-438 (577)
20 3ei3_B DNA damage-binding prot 100.0 5.5E-35 1.9E-39 318.6 33.7 250 6-312 26-284 (383)
21 4e54_B DNA damage-binding prot 100.0 8.9E-35 3.1E-39 323.3 32.1 220 39-312 108-329 (435)
22 3dm0_A Maltose-binding peripla 100.0 3.7E-34 1.3E-38 337.7 37.5 215 40-311 372-593 (694)
23 1vyh_C Platelet-activating fac 100.0 3.6E-34 1.2E-38 315.9 31.4 222 27-310 129-369 (410)
24 3ow8_A WD repeat-containing pr 100.0 5.9E-34 2E-38 303.5 31.7 225 25-310 55-279 (321)
25 2pm9_A Protein WEB1, protein t 100.0 6E-35 2E-39 321.1 24.5 241 50-331 12-272 (416)
26 3zwl_B Eukaryotic translation 100.0 4.1E-33 1.4E-37 300.2 37.6 225 38-311 20-250 (369)
27 3sfz_A APAF-1, apoptotic pepti 100.0 3.8E-34 1.3E-38 359.5 34.0 209 27-251 636-875 (1249)
28 4gqb_B Methylosome protein 50; 100.0 1.9E-33 6.4E-38 302.5 33.1 208 46-310 78-289 (344)
29 3sfz_A APAF-1, apoptotic pepti 100.0 1.8E-33 6.3E-38 353.2 36.9 260 42-342 607-903 (1249)
30 1r5m_A SIR4-interacting protei 100.0 1.8E-33 6E-38 309.3 31.4 237 47-332 42-300 (425)
31 3k26_A Polycomb protein EED; W 100.0 2.6E-33 8.8E-38 301.7 31.2 231 45-311 13-261 (366)
32 1got_B GT-beta; complex (GTP-b 100.0 1.3E-32 4.5E-37 295.4 33.7 223 26-310 75-301 (340)
33 3i2n_A WD repeat-containing pr 100.0 4.5E-33 1.5E-37 299.0 28.8 216 42-310 10-243 (357)
34 1sq9_A Antiviral protein SKI8; 100.0 7.2E-33 2.5E-37 302.7 30.5 231 40-311 6-268 (397)
35 3gre_A Serine/threonine-protei 100.0 1.2E-33 4.2E-38 313.7 24.3 221 37-312 49-294 (437)
36 2j04_B YDR362CP, TAU91; beta p 100.0 9.2E-34 3.1E-38 321.0 23.4 243 42-333 126-409 (524)
37 3dwl_C Actin-related protein 2 100.0 1.3E-33 4.4E-38 306.7 23.7 230 44-311 5-237 (377)
38 3mkq_A Coatomer beta'-subunit; 100.0 1.5E-32 5E-37 329.5 35.0 241 39-337 2-244 (814)
39 3odt_A Protein DOA1; ubiquitin 100.0 3E-32 1E-36 286.8 33.2 209 38-310 6-214 (313)
40 1k8k_C P40, ARP2/3 complex 41 100.0 1.8E-32 6.1E-37 296.3 32.0 224 45-310 3-233 (372)
41 1gxr_A ESG1, transducin-like e 100.0 1.3E-32 4.4E-37 292.7 30.0 227 49-333 8-236 (337)
42 2oaj_A Protein SNI1; WD40 repe 100.0 1.2E-32 4.2E-37 332.5 32.7 232 46-313 13-245 (902)
43 3vl1_A 26S proteasome regulato 100.0 1.6E-31 5.5E-36 294.5 35.5 242 27-310 77-322 (420)
44 4g56_B MGC81050 protein; prote 100.0 4.8E-32 1.6E-36 293.2 30.2 213 41-310 85-301 (357)
45 2ynn_A Coatomer subunit beta'; 100.0 6E-32 2.1E-36 285.5 30.0 251 26-335 33-284 (304)
46 3frx_A Guanine nucleotide-bind 100.0 8.9E-32 3.1E-36 286.3 31.5 223 25-310 37-267 (319)
47 3dw8_B Serine/threonine-protei 100.0 7.3E-32 2.5E-36 299.6 31.9 233 48-310 26-315 (447)
48 3v7d_B Cell division control p 100.0 1.7E-31 6E-36 298.7 35.0 227 42-310 113-341 (464)
49 4a11_B DNA excision repair pro 100.0 2.2E-31 7.6E-36 291.1 34.7 255 13-312 3-278 (408)
50 2pbi_B Guanine nucleotide-bind 100.0 1.1E-31 3.8E-36 290.0 31.2 225 26-310 84-315 (354)
51 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.5E-31 5.2E-36 287.7 32.1 244 25-310 35-283 (345)
52 3bg1_A Protein SEC13 homolog; 100.0 4E-32 1.4E-36 288.6 26.2 218 44-310 7-247 (316)
53 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.7E-31 9.4E-36 295.8 33.6 203 39-312 107-310 (445)
54 1pgu_A Actin interacting prote 100.0 1E-31 3.5E-36 310.7 31.3 136 29-182 143-286 (615)
55 3iz6_a 40S ribosomal protein R 100.0 2.6E-32 8.8E-37 297.9 24.0 232 26-310 86-329 (380)
56 2hes_X YDR267CP; beta-propelle 100.0 2.4E-31 8.1E-36 284.4 29.4 239 26-310 32-280 (330)
57 1pgu_A Actin interacting prote 100.0 4.4E-31 1.5E-35 305.4 33.5 250 26-332 86-349 (615)
58 2oaj_A Protein SNI1; WD40 repe 100.0 3.7E-31 1.3E-35 319.6 33.5 298 26-341 77-508 (902)
59 2pm7_B Protein transport prote 100.0 6.2E-31 2.1E-35 276.7 30.1 169 90-310 6-189 (297)
60 4aez_A CDC20, WD repeat-contai 100.0 4.8E-31 1.7E-35 289.8 30.2 203 46-311 87-294 (401)
61 3f3f_A Nucleoporin SEH1; struc 100.0 2.2E-30 7.6E-35 275.6 32.4 236 43-311 4-250 (351)
62 1erj_A Transcriptional repress 100.0 2.7E-30 9.2E-35 283.2 33.0 217 52-310 125-341 (393)
63 4gga_A P55CDC, cell division c 100.0 3.8E-30 1.3E-34 284.6 34.5 201 52-311 107-311 (420)
64 1yfq_A Cell cycle arrest prote 100.0 1.9E-30 6.5E-35 277.2 31.0 205 43-311 4-226 (342)
65 3mkq_A Coatomer beta'-subunit; 100.0 1.5E-30 5.1E-35 311.9 33.5 251 27-336 34-285 (814)
66 3vl1_A 26S proteasome regulato 100.0 1.3E-31 4.3E-36 295.3 21.7 219 52-311 58-279 (420)
67 4ggc_A P55CDC, cell division c 100.0 6.9E-30 2.4E-34 269.6 34.1 199 53-310 28-230 (318)
68 2xzm_R RACK1; ribosome, transl 100.0 3E-30 1E-34 277.3 31.7 227 25-311 46-286 (343)
69 2pm9_A Protein WEB1, protein t 100.0 1.1E-30 3.6E-35 287.1 27.5 265 25-333 42-317 (416)
70 3jrp_A Fusion protein of prote 100.0 2.8E-30 9.5E-35 279.4 30.3 222 41-311 2-241 (379)
71 2pm7_B Protein transport prote 100.0 2.5E-30 8.7E-35 272.0 28.3 252 43-343 2-276 (297)
72 3bg1_A Protein SEC13 homolog; 100.0 5.1E-31 1.7E-35 280.0 21.3 175 85-310 5-198 (316)
73 4h5i_A Guanine nucleotide-exch 100.0 4.5E-30 1.5E-34 278.6 28.4 207 50-310 14-254 (365)
74 4gga_A P55CDC, cell division c 100.0 2.1E-29 7.1E-34 278.6 34.2 227 26-310 123-353 (420)
75 3mmy_A MRNA export factor; mRN 100.0 9.8E-30 3.4E-34 273.6 30.7 213 36-311 25-248 (368)
76 1p22_A F-BOX/WD-repeat protein 100.0 1.6E-29 5.4E-34 280.9 32.7 200 43-310 126-325 (435)
77 2j04_B YDR362CP, TAU91; beta p 100.0 2.2E-30 7.5E-35 293.3 26.2 228 24-310 179-428 (524)
78 3v7d_B Cell division control p 100.0 9.1E-29 3.1E-33 276.6 35.9 229 26-310 140-381 (464)
79 1gxr_A ESG1, transducin-like e 100.0 1.2E-28 4.1E-33 261.9 30.5 228 45-333 46-277 (337)
80 1r5m_A SIR4-interacting protei 100.0 1.3E-28 4.5E-33 270.3 31.3 225 49-337 107-346 (425)
81 4ery_A WD repeat-containing pr 100.0 2.4E-28 8.2E-33 258.2 30.9 255 26-339 43-297 (312)
82 3dm0_A Maltose-binding peripla 100.0 1.6E-28 5.3E-33 289.6 32.0 227 26-311 403-633 (694)
83 4aez_A CDC20, WD repeat-contai 100.0 3.3E-28 1.1E-32 267.1 31.5 220 27-310 112-336 (401)
84 3dwl_C Actin-related protein 2 100.0 8.3E-29 2.8E-33 268.8 25.4 247 26-310 31-281 (377)
85 4ggc_A P55CDC, cell division c 100.0 9.2E-28 3.1E-32 253.3 32.7 227 26-310 43-273 (318)
86 3jro_A Fusion protein of prote 100.0 6.2E-29 2.1E-33 295.4 26.3 220 43-311 2-239 (753)
87 4e54_B DNA damage-binding prot 100.0 1.5E-28 5E-33 273.1 27.2 189 26-251 140-331 (435)
88 3k26_A Polycomb protein EED; W 100.0 1.3E-28 4.4E-33 264.9 25.8 258 27-311 43-319 (366)
89 1k8k_C P40, ARP2/3 complex 41 100.0 3.5E-28 1.2E-32 262.6 27.8 246 26-310 28-274 (372)
90 4aow_A Guanine nucleotide-bind 100.0 1E-27 3.5E-32 255.5 30.7 225 26-311 59-287 (340)
91 3i2n_A WD repeat-containing pr 100.0 3.1E-28 1.1E-32 261.1 25.8 229 27-311 43-292 (357)
92 3f3f_A Nucleoporin SEH1; struc 100.0 1.3E-27 4.5E-32 254.1 30.4 192 87-310 5-201 (351)
93 3ei3_B DNA damage-binding prot 100.0 7.4E-28 2.5E-32 262.1 28.6 244 26-311 94-340 (383)
94 1sq9_A Antiviral protein SKI8; 100.0 3.4E-28 1.2E-32 265.5 25.5 245 26-311 34-323 (397)
95 2aq5_A Coronin-1A; WD40 repeat 100.0 3.4E-28 1.2E-32 267.0 24.8 212 51-311 35-255 (402)
96 3zwl_B Eukaryotic translation 100.0 3.4E-27 1.2E-31 253.8 31.6 231 26-310 52-290 (369)
97 3gre_A Serine/threonine-protei 100.0 4E-28 1.4E-32 269.2 24.4 226 29-310 12-245 (437)
98 3vu4_A KMHSV2; beta-propeller 100.0 7.5E-27 2.6E-31 252.2 31.0 214 40-310 9-227 (355)
99 4gq1_A NUP37; propeller, trans 100.0 5.5E-28 1.9E-32 264.9 21.2 230 51-311 16-287 (393)
100 4a11_B DNA excision repair pro 100.0 1.2E-27 4.3E-32 261.2 23.9 190 71-312 22-220 (408)
101 2xyi_A Probable histone-bindin 100.0 5.6E-27 1.9E-31 260.0 27.9 219 44-310 122-353 (430)
102 3lrv_A PRE-mRNA-splicing facto 100.0 2.6E-27 8.8E-32 254.3 22.8 202 55-311 41-245 (343)
103 2j04_A TAU60, YPL007P, hypothe 100.0 2.5E-27 8.5E-32 262.7 22.0 201 48-312 13-213 (588)
104 2aq5_A Coronin-1A; WD40 repeat 100.0 1.5E-26 5E-31 254.0 27.2 253 27-336 56-328 (402)
105 3jrp_A Fusion protein of prote 99.9 2.8E-26 9.7E-31 247.8 27.7 240 26-311 31-288 (379)
106 1p22_A F-BOX/WD-repeat protein 99.9 2.8E-26 9.6E-31 254.6 28.3 214 27-310 152-365 (435)
107 2vdu_B TRNA (guanine-N(7)-)-me 99.9 7.3E-26 2.5E-30 252.5 30.8 208 51-312 5-273 (450)
108 2ovr_B FBW7, F-BOX/WD repeat p 99.9 1.3E-25 4.4E-30 249.9 32.5 213 27-312 138-350 (445)
109 4h5i_A Guanine nucleotide-exch 99.9 2E-26 7E-31 249.8 22.9 207 48-310 131-343 (365)
110 4gq1_A NUP37; propeller, trans 99.9 1.6E-26 5.3E-31 253.3 21.0 282 48-342 87-380 (393)
111 3bws_A Protein LP49; two-domai 99.9 2.1E-25 7.2E-30 246.6 29.4 212 38-311 111-335 (433)
112 3dw8_B Serine/threonine-protei 99.9 9.7E-26 3.3E-30 250.1 25.8 259 26-313 48-376 (447)
113 2xyi_A Probable histone-bindin 99.9 3.2E-25 1.1E-29 245.9 27.7 243 27-310 150-410 (430)
114 3odt_A Protein DOA1; ubiquitin 99.9 1.3E-24 4.6E-29 228.2 27.9 240 26-334 37-279 (313)
115 3jro_A Fusion protein of prote 99.9 8E-25 2.7E-29 260.1 25.1 240 26-311 29-286 (753)
116 2vdu_B TRNA (guanine-N(7)-)-me 99.9 4.2E-24 1.4E-28 238.2 27.0 252 43-332 95-365 (450)
117 1l0q_A Surface layer protein; 99.9 1.1E-23 3.7E-28 229.5 29.2 184 63-310 3-189 (391)
118 1yfq_A Cell cycle arrest prote 99.9 3.4E-24 1.2E-28 228.5 23.9 265 26-338 31-309 (342)
119 3mmy_A MRNA export factor; mRN 99.9 1.2E-23 4.2E-28 225.8 28.2 266 26-341 62-335 (368)
120 2w18_A PALB2, fancn, partner a 99.9 3.3E-24 1.1E-28 223.9 22.7 202 52-308 113-355 (356)
121 1l0q_A Surface layer protein; 99.9 7.6E-23 2.6E-27 222.8 32.2 219 26-310 10-233 (391)
122 2w18_A PALB2, fancn, partner a 99.9 1.8E-23 6.3E-28 218.2 25.8 219 38-310 23-269 (356)
123 3lrv_A PRE-mRNA-splicing facto 99.9 8E-24 2.8E-28 227.0 23.1 223 26-312 56-294 (343)
124 3vu4_A KMHSV2; beta-propeller 99.9 8E-23 2.7E-27 220.5 24.1 164 76-311 3-169 (355)
125 2j04_A TAU60, YPL007P, hypothe 99.9 1.6E-22 5.3E-27 224.4 22.6 203 48-309 83-296 (588)
126 1nir_A Nitrite reductase; hemo 99.9 5.5E-21 1.9E-25 217.7 28.5 205 57-312 144-357 (543)
127 3bws_A Protein LP49; two-domai 99.9 1.2E-20 4.1E-25 208.4 24.6 245 28-338 144-417 (433)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.4E-20 8.2E-25 205.6 24.7 220 26-310 91-344 (415)
129 2hqs_A Protein TOLB; TOLB, PAL 99.8 2.6E-19 9E-24 197.3 30.0 237 28-334 159-410 (415)
130 2ecf_A Dipeptidyl peptidase IV 99.8 4.3E-19 1.5E-23 210.3 31.1 222 50-315 36-326 (741)
131 1k32_A Tricorn protease; prote 99.8 5.7E-19 1.9E-23 217.4 29.1 263 42-335 44-392 (1045)
132 2ojh_A Uncharacterized protein 99.8 1E-18 3.5E-23 180.9 23.2 255 22-339 16-289 (297)
133 1nir_A Nitrite reductase; hemo 99.8 6.1E-18 2.1E-22 192.6 29.5 248 28-335 159-434 (543)
134 1k32_A Tricorn protease; prote 99.8 6.1E-18 2.1E-22 208.2 29.6 255 41-340 194-490 (1045)
135 1ri6_A Putative isomerase YBHE 99.8 6.7E-18 2.3E-22 179.3 25.5 196 64-310 7-209 (343)
136 1xfd_A DIP, dipeptidyl aminope 99.8 3.6E-18 1.2E-22 201.8 24.8 248 52-336 18-320 (723)
137 3u4y_A Uncharacterized protein 99.8 3.3E-17 1.1E-21 173.8 27.6 197 57-311 4-208 (331)
138 2ojh_A Uncharacterized protein 99.8 1.9E-17 6.6E-22 171.2 24.8 182 67-310 17-204 (297)
139 2oit_A Nucleoporin 214KDA; NH2 99.8 2.6E-18 8.8E-23 190.3 17.0 219 49-311 35-279 (434)
140 2z3z_A Dipeptidyl aminopeptida 99.8 4.6E-17 1.6E-21 191.8 27.5 201 51-309 82-341 (706)
141 3vgz_A Uncharacterized protein 99.8 1.7E-16 5.9E-21 169.4 29.4 206 49-311 39-263 (353)
142 2oit_A Nucleoporin 214KDA; NH2 99.7 4.5E-17 1.5E-21 180.3 22.2 221 48-310 90-333 (434)
143 3o4h_A Acylamino-acid-releasin 99.7 1.3E-16 4.4E-21 183.7 25.9 195 50-311 21-228 (582)
144 1pby_B Quinohemoprotein amine 99.7 1.1E-16 3.9E-21 169.3 21.2 146 63-250 2-166 (337)
145 1ri6_A Putative isomerase YBHE 99.7 6.4E-16 2.2E-20 164.0 22.8 267 27-340 14-295 (343)
146 3pe7_A Oligogalacturonate lyas 99.7 1.3E-15 4.6E-20 165.1 23.9 212 40-311 20-274 (388)
147 2z3z_A Dipeptidyl aminopeptida 99.7 7.2E-16 2.5E-20 181.6 23.3 216 41-311 18-294 (706)
148 3u4y_A Uncharacterized protein 99.7 1.3E-15 4.5E-20 161.3 23.1 253 26-339 18-290 (331)
149 3vgz_A Uncharacterized protein 99.7 3E-15 1E-19 159.8 25.4 241 39-339 78-331 (353)
150 1pby_B Quinohemoprotein amine 99.7 1.2E-15 3.9E-20 161.5 21.4 243 27-313 10-313 (337)
151 1z68_A Fibroblast activation p 99.7 2E-15 6.8E-20 178.2 24.0 220 55-312 20-293 (719)
152 3hfq_A Uncharacterized protein 99.6 8.4E-15 2.9E-19 156.5 23.0 247 47-339 36-303 (347)
153 3scy_A Hypothetical bacterial 99.6 4.4E-14 1.5E-18 151.8 28.3 212 62-310 13-242 (361)
154 3hfq_A Uncharacterized protein 99.6 9.7E-15 3.3E-19 156.0 22.4 239 28-309 63-316 (347)
155 1xfd_A DIP, dipeptidyl aminope 99.6 2.4E-15 8.2E-20 177.5 19.0 276 27-340 36-378 (723)
156 2ecf_A Dipeptidyl peptidase IV 99.6 1.9E-15 6.4E-20 179.0 17.7 230 52-339 110-397 (741)
157 1jmx_B Amine dehydrogenase; ox 99.6 2.1E-14 7.1E-19 152.7 20.4 245 27-312 20-327 (349)
158 1jmx_B Amine dehydrogenase; ox 99.6 5.3E-14 1.8E-18 149.6 20.1 241 55-338 4-311 (349)
159 3scy_A Hypothetical bacterial 99.6 6.8E-13 2.3E-17 142.5 28.2 270 28-339 27-323 (361)
160 3c5m_A Oligogalacturonate lyas 99.5 6.1E-14 2.1E-18 152.1 16.5 211 41-311 21-274 (396)
161 2oiz_A Aromatic amine dehydrog 99.5 1.3E-12 4.3E-17 140.9 24.2 266 27-334 30-360 (361)
162 3azo_A Aminopeptidase; POP fam 99.5 1.7E-12 5.7E-17 151.5 24.0 207 45-310 18-274 (662)
163 3fvz_A Peptidyl-glycine alpha- 99.5 4.6E-12 1.6E-16 134.5 24.4 238 50-333 23-303 (329)
164 1jof_A Carboxy-CIS,CIS-muconat 99.5 1.3E-12 4.5E-17 140.8 20.3 246 49-339 38-327 (365)
165 4a5s_A Dipeptidyl peptidase 4 99.5 8.2E-13 2.8E-17 156.4 19.7 114 51-182 17-144 (740)
166 1z68_A Fibroblast activation p 99.4 6E-13 2.1E-17 156.9 15.3 259 27-312 35-348 (719)
167 3o4h_A Acylamino-acid-releasin 99.4 8.6E-13 2.9E-17 151.6 15.8 219 27-308 43-274 (582)
168 3pe7_A Oligogalacturonate lyas 99.4 1.1E-11 3.7E-16 134.1 23.3 248 37-340 67-369 (388)
169 4a5s_A Dipeptidyl peptidase 4 99.4 3.9E-12 1.3E-16 150.6 18.2 265 27-314 35-357 (740)
170 2dg1_A DRP35, lactonase; beta 99.4 1E-10 3.5E-15 123.7 26.9 242 41-338 35-296 (333)
171 1q7f_A NHL, brain tumor CG1071 99.4 5.9E-11 2E-15 122.8 23.6 202 48-310 74-280 (286)
172 1q7f_A NHL, brain tumor CG1071 99.3 2E-10 6.7E-15 118.8 25.8 227 47-334 26-263 (286)
173 1jof_A Carboxy-CIS,CIS-muconat 99.3 1.2E-11 4.2E-16 133.1 17.1 215 52-311 84-342 (365)
174 3fvz_A Peptidyl-glycine alpha- 99.3 2.9E-10 9.9E-15 120.5 26.8 208 48-310 88-322 (329)
175 3c5m_A Oligogalacturonate lyas 99.3 2.4E-11 8E-16 131.5 16.2 224 53-340 83-369 (396)
176 2xdw_A Prolyl endopeptidase; a 99.3 1.7E-10 5.8E-15 135.8 23.4 236 48-337 122-395 (710)
177 3e5z_A Putative gluconolactona 99.3 3.7E-10 1.3E-14 117.5 23.2 233 40-338 17-273 (296)
178 2oiz_A Aromatic amine dehydrog 99.2 6.5E-10 2.2E-14 119.5 22.7 191 61-310 14-230 (361)
179 3azo_A Aminopeptidase; POP fam 99.2 1.2E-10 4E-15 135.8 18.1 219 41-310 58-325 (662)
180 1rwi_B Serine/threonine-protei 99.2 2.5E-09 8.7E-14 109.1 24.1 220 52-334 25-246 (270)
181 2gop_A Trilobed protease; beta 99.2 5.3E-10 1.8E-14 118.8 19.6 205 51-331 59-311 (347)
182 2bkl_A Prolyl endopeptidase; m 99.2 2.1E-10 7.2E-15 134.7 17.1 232 48-337 118-378 (695)
183 1rwi_B Serine/threonine-protei 99.1 4.7E-09 1.6E-13 107.1 22.5 201 49-311 65-265 (270)
184 1xip_A Nucleoporin NUP159; bet 99.1 2.3E-10 8E-15 122.8 13.1 181 52-297 39-231 (388)
185 3no2_A Uncharacterized protein 99.1 2.5E-09 8.4E-14 110.3 19.3 192 60-312 3-197 (276)
186 3no2_A Uncharacterized protein 99.1 1E-08 3.5E-13 105.7 23.0 231 26-318 13-259 (276)
187 2z2n_A Virginiamycin B lyase; 99.1 5.2E-08 1.8E-12 100.5 28.1 204 45-312 9-214 (299)
188 3e5z_A Putative gluconolactona 99.1 9.2E-09 3.2E-13 106.8 22.3 204 43-310 61-286 (296)
189 2dg1_A DRP35, lactonase; beta 99.1 1.8E-08 6.1E-13 106.4 24.7 216 47-310 83-316 (333)
190 3dsm_A Uncharacterized protein 99.1 6.2E-09 2.1E-13 110.2 20.7 223 51-339 44-284 (328)
191 2mad_H Methylamine dehydrogena 99.1 3.7E-08 1.3E-12 106.2 27.1 235 38-315 55-355 (373)
192 3dsm_A Uncharacterized protein 99.0 2.4E-08 8.4E-13 105.6 24.3 229 38-330 72-320 (328)
193 1qks_A Cytochrome CD1 nitrite 99.0 4.1E-08 1.4E-12 111.5 26.4 216 39-311 186-422 (567)
194 2xdw_A Prolyl endopeptidase; a 99.0 2E-08 6.9E-13 118.0 24.0 207 53-312 173-416 (710)
195 1pjx_A Dfpase, DIISOPROPYLFLUO 99.0 4.4E-08 1.5E-12 102.1 24.0 233 47-336 14-282 (314)
196 3sjl_D Methylamine dehydrogena 99.0 1.1E-07 3.7E-12 101.7 26.4 254 37-332 66-384 (386)
197 3hrp_A Uncharacterized protein 99.0 1.1E-07 3.9E-12 103.7 26.0 216 51-311 131-355 (409)
198 2gop_A Trilobed protease; beta 99.0 2.6E-08 9E-13 105.6 20.1 181 53-309 106-330 (347)
199 2z2n_A Virginiamycin B lyase; 98.9 3E-07 1E-11 94.7 27.0 201 48-309 54-254 (299)
200 1qks_A Cytochrome CD1 nitrite 98.9 7.7E-08 2.6E-12 109.2 23.9 205 60-312 165-375 (567)
201 2bkl_A Prolyl endopeptidase; m 98.9 1.8E-08 6.3E-13 118.1 18.9 200 54-312 171-399 (695)
202 3iuj_A Prolyl endopeptidase; h 98.9 1.6E-08 5.4E-13 118.6 18.3 208 47-311 125-360 (693)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 98.9 1.1E-07 3.7E-12 99.2 21.9 206 48-311 68-300 (314)
204 3g4e_A Regucalcin; six bladed 98.9 6.4E-07 2.2E-11 93.1 26.6 238 44-338 6-258 (297)
205 2qc5_A Streptogramin B lactona 98.9 9.7E-07 3.3E-11 90.9 27.6 202 47-309 58-259 (300)
206 2qc5_A Streptogramin B lactona 98.9 8.5E-07 2.9E-11 91.3 27.1 202 46-308 15-216 (300)
207 3c75_H MADH, methylamine dehyd 98.9 2.6E-07 8.9E-12 100.5 23.6 240 37-316 106-408 (426)
208 1yr2_A Prolyl oligopeptidase; 98.8 1.2E-07 4.2E-12 111.9 22.1 234 48-338 160-423 (741)
209 3g4e_A Regucalcin; six bladed 98.8 5.4E-07 1.9E-11 93.6 22.8 195 49-299 52-261 (297)
210 2qe8_A Uncharacterized protein 98.7 5.5E-07 1.9E-11 95.7 21.2 263 38-332 7-301 (343)
211 2ghs_A AGR_C_1268P; regucalcin 98.7 2.5E-06 8.4E-11 90.0 25.9 224 51-336 49-286 (326)
212 2hz6_A Endoplasmic reticulum t 98.7 3.8E-09 1.3E-13 113.8 3.9 182 61-312 8-194 (369)
213 1xip_A Nucleoporin NUP159; bet 98.7 1.4E-07 4.7E-12 101.3 15.4 145 48-233 86-230 (388)
214 1mda_H Methylamine dehydrogena 98.7 2.8E-07 9.7E-12 98.5 17.8 249 37-330 53-365 (368)
215 3dr2_A Exported gluconolactona 98.7 7E-07 2.4E-11 93.1 20.6 229 41-337 35-292 (305)
216 2ghs_A AGR_C_1268P; regucalcin 98.6 5.9E-06 2E-10 87.0 23.5 193 50-300 89-292 (326)
217 3hrp_A Uncharacterized protein 98.6 5.5E-06 1.9E-10 90.3 23.5 219 56-309 176-409 (409)
218 1yr2_A Prolyl oligopeptidase; 98.6 1E-06 3.5E-11 104.0 18.8 200 54-312 212-443 (741)
219 2mad_H Methylamine dehydrogena 98.6 2.7E-05 9.4E-10 83.5 28.2 247 57-334 27-330 (373)
220 2iwa_A Glutamine cyclotransfer 98.5 1.4E-05 4.9E-10 80.8 21.6 225 39-310 8-237 (266)
221 3sjl_D Methylamine dehydrogena 98.4 4.5E-06 1.5E-10 89.2 17.5 251 56-335 38-344 (386)
222 2qe8_A Uncharacterized protein 98.4 5.7E-06 1.9E-10 87.8 18.2 222 47-306 63-317 (343)
223 3dr2_A Exported gluconolactona 98.4 7.4E-06 2.5E-10 85.2 17.7 199 44-307 79-303 (305)
224 1npe_A Nidogen, entactin; glyc 98.3 0.00011 3.7E-09 74.6 24.7 221 51-332 36-261 (267)
225 3iuj_A Prolyl endopeptidase; h 98.3 2.2E-05 7.5E-10 91.8 20.3 199 54-312 178-407 (693)
226 3nol_A Glutamine cyclotransfer 98.3 4.6E-05 1.6E-09 76.2 18.8 213 38-300 29-245 (262)
227 2ece_A 462AA long hypothetical 98.2 5.8E-05 2E-09 81.3 20.0 250 17-298 95-399 (462)
228 2ece_A 462AA long hypothetical 98.2 0.00011 3.7E-09 79.2 21.4 212 60-311 93-353 (462)
229 3c75_H MADH, methylamine dehyd 98.2 2.9E-05 9.9E-10 84.3 16.5 106 60-181 82-211 (426)
230 3mbr_X Glutamine cyclotransfer 98.1 0.00054 1.9E-08 67.8 22.1 211 40-299 9-223 (243)
231 3qqz_A Putative uncharacterize 98.1 0.00079 2.7E-08 67.5 23.6 226 44-309 20-252 (255)
232 4gco_A Protein STI-1; structur 98.0 3.9E-05 1.3E-09 68.3 12.0 109 359-477 9-117 (126)
233 3nok_A Glutaminyl cyclase; bet 98.0 0.00022 7.5E-09 71.3 18.3 211 39-299 42-254 (268)
234 1fwx_A Nitrous oxide reductase 98.0 8.3E-05 2.8E-09 82.9 15.1 241 38-312 120-433 (595)
235 3v64_C Agrin; beta propeller, 97.9 0.0076 2.6E-07 63.6 29.4 208 51-317 73-282 (349)
236 2p4o_A Hypothetical protein; p 97.9 0.0023 7.8E-08 66.2 24.8 248 38-339 20-275 (306)
237 2hz6_A Endoplasmic reticulum t 97.9 2.3E-06 7.8E-11 91.9 0.9 166 39-251 28-196 (369)
238 1npe_A Nidogen, entactin; glyc 97.9 0.0017 5.8E-08 65.6 22.3 190 63-310 2-198 (267)
239 3v65_B Low-density lipoprotein 97.8 0.0052 1.8E-07 66.0 26.7 209 51-318 116-326 (386)
240 1mda_H Methylamine dehydrogena 97.8 0.00041 1.4E-08 73.9 17.3 242 64-339 34-331 (368)
241 1kb0_A Quinohemoprotein alcoho 97.8 0.00033 1.1E-08 81.3 17.8 72 54-127 246-347 (677)
242 3rkv_A Putative peptidylprolyl 97.8 0.00013 4.4E-09 67.7 10.7 125 360-488 8-145 (162)
243 1kb0_A Quinohemoprotein alcoho 97.7 0.00054 1.9E-08 79.5 18.0 100 71-183 189-350 (677)
244 2hr2_A Hypothetical protein; a 97.7 3.3E-05 1.1E-09 71.2 6.1 123 362-488 10-149 (159)
245 1ijq_A LDL receptor, low-densi 97.7 0.013 4.4E-07 60.9 26.9 211 50-316 29-244 (316)
246 3v64_C Agrin; beta propeller, 97.7 0.016 5.4E-07 61.2 27.5 200 51-311 34-235 (349)
247 1yiq_A Quinohemoprotein alcoho 97.7 0.00051 1.8E-08 79.9 16.8 100 71-183 182-342 (689)
248 1yiq_A Quinohemoprotein alcoho 97.7 0.0014 4.6E-08 76.3 19.8 171 62-252 121-343 (689)
249 3v65_B Low-density lipoprotein 97.6 0.013 4.6E-07 62.7 24.4 197 54-311 80-278 (386)
250 1fwx_A Nitrous oxide reductase 97.5 0.00021 7.2E-09 79.7 9.6 224 61-310 100-361 (595)
251 3p5b_L Low density lipoprotein 97.5 0.056 1.9E-06 58.1 28.7 213 49-317 110-327 (400)
252 2iwa_A Glutamine cyclotransfer 97.5 0.0036 1.2E-07 63.1 17.6 196 82-336 9-220 (266)
253 3sov_A LRP-6, low-density lipo 97.5 0.029 9.9E-07 58.3 25.1 207 52-316 36-244 (318)
254 3upv_A Heat shock protein STI1 97.4 0.00084 2.9E-08 58.9 10.8 100 362-471 3-102 (126)
255 3nok_A Glutaminyl cyclase; bet 97.4 0.011 3.7E-07 59.1 19.8 171 84-315 45-215 (268)
256 3sz7_A HSC70 cochaperone (SGT) 97.4 0.002 6.8E-08 59.6 13.9 124 359-492 7-132 (164)
257 2fp8_A Strictosidine synthase; 97.4 0.0075 2.6E-07 62.7 19.8 199 51-309 19-268 (322)
258 2fp8_A Strictosidine synthase; 97.4 0.011 3.8E-07 61.4 21.0 201 51-310 80-313 (322)
259 2xe4_A Oligopeptidase B; hydro 97.4 0.0057 1.9E-07 71.9 20.3 120 48-180 170-305 (751)
260 3q7m_A Lipoprotein YFGL, BAMB; 97.4 0.02 6.8E-07 60.7 22.8 106 61-182 52-165 (376)
261 3nol_A Glutamine cyclotransfer 97.3 0.016 5.4E-07 57.8 19.3 173 84-316 33-207 (262)
262 3hxj_A Pyrrolo-quinoline quino 97.3 0.0022 7.5E-08 66.5 13.8 194 45-310 131-324 (330)
263 1ijq_A LDL receptor, low-densi 97.3 0.068 2.3E-06 55.3 25.0 183 72-310 10-195 (316)
264 3m0c_C LDL receptor, low-densi 97.3 0.082 2.8E-06 61.9 28.1 226 49-332 422-655 (791)
265 3hxj_A Pyrrolo-quinoline quino 97.1 0.0056 1.9E-07 63.4 14.9 176 62-308 107-282 (330)
266 3q7m_A Lipoprotein YFGL, BAMB; 97.1 0.0076 2.6E-07 64.0 16.1 182 62-307 188-375 (376)
267 3p5b_L Low density lipoprotein 97.1 0.11 3.9E-06 55.7 25.3 193 64-312 85-279 (400)
268 3amr_A 3-phytase; beta-propell 97.1 0.083 2.8E-06 55.0 22.8 203 61-310 39-263 (355)
269 3gyz_A Chaperone protein IPGC; 97.1 0.0065 2.2E-07 55.6 13.1 110 355-474 28-137 (151)
270 2p4o_A Hypothetical protein; p 97.1 0.048 1.6E-06 56.1 21.0 201 50-300 71-278 (306)
271 1k3i_A Galactose oxidase precu 97.0 0.0095 3.2E-07 68.8 16.8 115 55-181 190-325 (656)
272 1kv9_A Type II quinohemoprotei 97.0 0.012 4.2E-07 68.0 17.4 71 55-127 234-334 (668)
273 2vgx_A Chaperone SYCD; alterna 97.0 0.0076 2.6E-07 54.8 12.6 110 358-477 16-125 (148)
274 1n7d_A LDL receptor, low-densi 96.9 0.0025 8.6E-08 74.1 11.0 205 51-312 406-616 (699)
275 3sov_A LRP-6, low-density lipo 96.9 0.098 3.3E-06 54.2 22.2 185 71-311 12-198 (318)
276 1kt0_A FKBP51, 51 kDa FK506-bi 96.9 0.0044 1.5E-07 68.2 11.9 120 361-484 266-394 (457)
277 3m0c_C LDL receptor, low-densi 96.8 0.16 5.6E-06 59.3 25.3 187 71-312 403-591 (791)
278 2fbn_A 70 kDa peptidylprolyl i 96.8 0.014 4.7E-07 55.6 13.4 126 359-488 34-169 (198)
279 1k3i_A Galactose oxidase precu 96.8 0.028 9.6E-07 64.8 18.3 96 30-127 221-324 (656)
280 4a2l_A BT_4663, two-component 96.8 0.36 1.2E-05 56.7 28.3 209 50-312 214-438 (795)
281 4gcn_A Protein STI-1; structur 96.8 0.0056 1.9E-07 54.0 9.6 101 363-473 8-115 (127)
282 1ihg_A Cyclophilin 40; ppiase 96.8 0.008 2.7E-07 64.1 12.2 123 362-488 222-354 (370)
283 4hw6_A Hypothetical protein, I 96.7 0.12 4E-06 56.2 21.4 213 52-308 140-372 (433)
284 2xcb_A PCRH, regulatory protei 96.7 0.017 5.7E-07 51.8 12.3 110 358-477 13-122 (142)
285 1kv9_A Type II quinohemoprotei 96.7 0.046 1.6E-06 63.1 19.0 173 62-252 117-338 (668)
286 4a0p_A LRP6, LRP-6, low-densit 96.7 0.7 2.4E-05 52.6 28.6 207 51-318 37-245 (628)
287 2xe4_A Oligopeptidase B; hydro 96.5 0.18 6.1E-06 59.0 22.4 115 54-179 224-354 (751)
288 3mbr_X Glutamine cyclotransfer 96.5 0.089 3E-06 51.9 16.5 143 62-234 75-222 (243)
289 3s94_A LRP-6, low-density lipo 96.4 0.29 1E-05 55.7 23.1 207 50-315 39-248 (619)
290 4a0p_A LRP6, LRP-6, low-densit 96.4 0.74 2.5E-05 52.4 26.3 186 70-313 13-200 (628)
291 4a2l_A BT_4663, two-component 96.4 1.1 3.7E-05 52.6 28.5 207 50-311 262-481 (795)
292 1p5q_A FKBP52, FK506-binding p 96.4 0.019 6.6E-07 60.1 11.9 115 360-478 144-267 (336)
293 2if4_A ATFKBP42; FKBP-like, al 96.4 0.006 2.1E-07 64.1 7.9 114 360-477 176-300 (338)
294 1flg_A Protein (quinoprotein e 96.3 0.21 7.3E-06 56.4 20.8 53 72-127 291-356 (582)
295 1hxi_A PEX5, peroxisome target 96.3 0.019 6.4E-07 50.1 9.4 98 367-474 21-118 (121)
296 2ad6_A Methanol dehydrogenase 96.2 0.24 8.2E-06 55.9 20.9 25 290-314 474-498 (571)
297 3q49_B STIP1 homology and U bo 96.1 0.05 1.7E-06 47.7 11.4 102 362-473 8-109 (137)
298 2dba_A Smooth muscle cell asso 96.1 0.051 1.8E-06 48.1 11.6 112 359-477 24-135 (148)
299 1elw_A TPR1-domain of HOP; HOP 96.0 0.093 3.2E-06 43.9 12.7 105 363-477 4-108 (118)
300 2c2l_A CHIP, carboxy terminus 96.0 0.021 7.2E-07 58.1 9.9 102 363-474 4-105 (281)
301 4hw6_A Hypothetical protein, I 96.0 0.51 1.7E-05 51.1 21.5 238 45-309 176-432 (433)
302 2p9w_A MAL S 1 allergenic prot 95.9 0.46 1.6E-05 48.9 19.1 168 46-247 8-215 (334)
303 2lni_A Stress-induced-phosphop 95.9 0.12 4E-06 44.6 13.1 108 358-475 11-118 (133)
304 2ad6_A Methanol dehydrogenase 95.9 0.17 5.8E-06 57.1 17.6 69 56-127 240-336 (571)
305 3tc9_A Hypothetical hydrolase; 95.9 0.62 2.1E-05 50.4 21.1 118 49-179 177-301 (430)
306 3tc9_A Hypothetical hydrolase; 95.8 0.14 4.8E-06 55.5 15.8 156 52-246 138-300 (430)
307 2xbg_A YCF48-like protein; pho 95.8 1.1 3.9E-05 46.2 22.0 199 49-308 120-320 (327)
308 2p9w_A MAL S 1 allergenic prot 95.7 0.21 7E-06 51.5 15.5 178 93-310 12-215 (334)
309 1flg_A Protein (quinoprotein e 95.6 0.38 1.3E-05 54.3 18.7 25 290-314 496-520 (582)
310 3kya_A Putative phosphatase; s 95.5 1.1 3.8E-05 49.0 21.2 175 52-246 140-340 (496)
311 2ism_A Putative oxidoreductase 95.4 1.9 6.4E-05 45.1 22.2 107 51-167 31-153 (352)
312 1n7d_A LDL receptor, low-densi 95.4 0.063 2.2E-06 62.2 11.5 163 53-253 455-620 (699)
313 3v9f_A Two-component system se 95.3 2 6.9E-05 50.2 24.5 202 50-310 406-611 (781)
314 2xev_A YBGF; tetratricopeptide 95.3 0.19 6.4E-06 43.3 12.0 103 368-477 7-112 (129)
315 1w6s_A Methanol dehydrogenase 95.3 0.43 1.5E-05 54.0 17.7 69 56-127 246-343 (599)
316 3s94_A LRP-6, low-density lipo 95.3 2.6 8.9E-05 47.8 24.4 202 51-312 349-553 (619)
317 4gyw_A UDP-N-acetylglucosamine 95.2 0.097 3.3E-06 60.8 12.4 87 380-475 59-145 (723)
318 2xzh_A Clathrin heavy chain 1; 95.1 3.4 0.00012 42.3 25.7 232 57-336 73-316 (365)
319 3urz_A Uncharacterized protein 94.9 0.12 4E-06 49.6 10.2 104 364-477 5-124 (208)
320 2vyi_A SGTA protein; chaperone 94.8 0.35 1.2E-05 41.0 12.3 106 361-476 10-115 (131)
321 3qqz_A Putative uncharacterize 94.8 3.5 0.00012 40.8 21.6 167 51-245 70-251 (255)
322 4ga2_A E3 SUMO-protein ligase 94.8 0.12 4.1E-06 46.6 9.5 100 367-476 35-135 (150)
323 2h6f_A Protein farnesyltransfe 94.7 0.27 9.3E-06 52.3 13.3 107 360-475 94-200 (382)
324 2h6f_A Protein farnesyltransfe 94.7 0.13 4.4E-06 54.8 10.7 108 360-476 128-235 (382)
325 1w6s_A Methanol dehydrogenase 94.7 1.6 5.4E-05 49.3 20.2 106 62-181 62-193 (599)
326 1a17_A Serine/threonine protei 94.6 0.49 1.7E-05 42.4 13.4 106 362-477 12-117 (166)
327 3v9f_A Two-component system se 94.6 5.5 0.00019 46.4 25.8 201 50-312 257-480 (781)
328 1zu2_A Mitochondrial import re 94.5 0.099 3.4E-06 47.8 7.9 98 380-483 18-133 (158)
329 4gyw_A UDP-N-acetylglucosamine 94.5 0.2 6.9E-06 58.1 12.5 108 359-476 5-112 (723)
330 3pbp_A Nucleoporin NUP82; beta 94.4 0.44 1.5E-05 50.6 13.6 123 52-176 67-209 (452)
331 2pl2_A Hypothetical conserved 94.3 0.26 8.7E-06 47.5 11.2 99 367-475 9-118 (217)
332 3a9g_A Putative uncharacterize 94.3 5 0.00017 41.8 22.0 112 50-168 28-154 (354)
333 1wao_1 Serine/threonine protei 94.1 0.18 6.3E-06 55.4 10.7 97 375-481 18-114 (477)
334 4i17_A Hypothetical protein; T 94.0 0.52 1.8E-05 45.3 12.7 104 364-477 8-112 (228)
335 3sre_A PON1, serum paraoxonase 94.0 3.7 0.00013 42.8 19.8 202 53-309 52-297 (355)
336 1bpo_A Protein (clathrin); cla 94.0 7.7 0.00026 41.3 26.1 234 56-337 71-316 (494)
337 2l6j_A TPR repeat-containing p 93.9 0.059 2E-06 45.1 4.9 83 367-459 8-96 (111)
338 1elr_A TPR2A-domain of HOP; HO 93.9 0.44 1.5E-05 40.5 10.7 100 364-473 5-111 (131)
339 2xn4_A Kelch-like protein 2; s 93.8 2.2 7.6E-05 43.0 17.7 64 61-127 61-134 (302)
340 3sre_A PON1, serum paraoxonase 93.8 1.9 6.4E-05 45.1 17.1 29 282-310 223-252 (355)
341 2kck_A TPR repeat; tetratricop 93.8 0.26 9E-06 40.6 8.8 95 369-473 12-109 (112)
342 3ii7_A Kelch-like protein 7; p 93.6 6 0.00021 39.8 20.7 64 61-127 55-128 (306)
343 2vpj_A Kelch-like protein 12; 93.6 3.2 0.00011 41.7 18.4 147 61-249 62-233 (301)
344 3kya_A Putative phosphatase; s 93.4 1.3 4.4E-05 48.5 15.6 177 95-310 140-341 (496)
345 2e2e_A Formate-dependent nitri 93.2 0.8 2.7E-05 41.9 12.1 108 360-476 41-150 (177)
346 2xbg_A YCF48-like protein; pho 93.1 7.6 0.00026 39.8 20.6 158 48-245 160-320 (327)
347 3pbp_A Nucleoporin NUP82; beta 93.1 4.6 0.00016 42.9 18.5 168 107-306 32-208 (452)
348 1na0_A Designed protein CTPR3; 92.6 1.9 6.4E-05 35.8 12.7 102 365-476 11-112 (125)
349 3k9i_A BH0479 protein; putativ 92.6 0.15 5E-06 43.6 5.4 91 380-476 6-96 (117)
350 1tl2_A L10, protein (tachylect 92.5 5.6 0.00019 38.3 16.6 139 62-240 4-156 (236)
351 3vtx_A MAMA; tetratricopeptide 92.3 0.71 2.4E-05 42.5 10.3 48 425-472 125-172 (184)
352 4asc_A Kelch repeat and BTB do 92.3 9.5 0.00033 38.5 19.9 68 57-127 41-127 (315)
353 3ieg_A DNAJ homolog subfamily 92.3 1.3 4.5E-05 45.2 13.4 113 370-488 241-353 (359)
354 3vtx_A MAMA; tetratricopeptide 92.2 1.2 4.2E-05 40.8 11.9 54 423-476 89-142 (184)
355 2y4t_A DNAJ homolog subfamily 91.8 0.77 2.6E-05 49.1 11.2 110 356-475 19-128 (450)
356 2gw1_A Mitochondrial precursor 91.5 1.2 4.1E-05 48.4 12.6 103 362-475 5-107 (514)
357 2pl2_A Hypothetical conserved 91.2 1.7 5.8E-05 41.6 12.0 106 359-471 35-148 (217)
358 2kat_A Uncharacterized protein 91.1 0.42 1.4E-05 40.3 6.6 82 383-473 4-85 (115)
359 1zgk_A Kelch-like ECH-associat 90.9 6.6 0.00023 39.6 16.8 147 61-249 70-242 (308)
360 3uq3_A Heat shock protein STI1 90.9 1.1 3.9E-05 43.2 10.5 100 362-471 138-237 (258)
361 4ga2_A E3 SUMO-protein ligase 90.8 0.56 1.9E-05 42.1 7.5 89 380-477 13-101 (150)
362 1hh8_A P67PHOX, NCF-2, neutrop 90.5 1.8 6.2E-05 40.6 11.3 96 369-474 43-154 (213)
363 1xi4_A Clathrin heavy chain; a 90.4 9.3 0.00032 46.9 19.2 232 58-336 73-315 (1630)
364 2vsy_A XCC0866; transferase, g 89.8 1.7 5.9E-05 48.5 12.1 104 363-476 23-126 (568)
365 2y4t_A DNAJ homolog subfamily 89.7 2.6 8.9E-05 44.8 13.1 111 370-486 264-374 (450)
366 1hh8_A P67PHOX, NCF-2, neutrop 89.7 0.97 3.3E-05 42.6 8.6 99 364-475 7-105 (213)
367 2woz_A Kelch repeat and BTB do 89.5 19 0.00065 36.3 19.9 67 58-127 53-137 (318)
368 2pzi_A Probable serine/threoni 89.5 0.78 2.7E-05 52.9 9.0 46 429-474 522-567 (681)
369 3qou_A Protein YBBN; thioredox 89.2 2.7 9.1E-05 42.3 11.9 108 360-474 114-252 (287)
370 1cru_A Protein (soluble quinop 89.2 17 0.0006 39.1 19.1 115 50-169 26-164 (454)
371 4i17_A Hypothetical protein; T 89.2 2.4 8.4E-05 40.4 11.2 115 360-478 73-217 (228)
372 1xnf_A Lipoprotein NLPI; TPR, 89.1 2 7E-05 41.9 10.8 104 362-475 42-145 (275)
373 2gw1_A Mitochondrial precursor 89.0 2.6 8.8E-05 45.7 12.5 111 367-478 376-486 (514)
374 2vpj_A Kelch-like protein 12; 88.7 7.9 0.00027 38.7 15.3 106 61-180 112-232 (301)
375 2kc7_A BFR218_protein; tetratr 88.6 1.1 3.6E-05 36.4 7.0 55 422-476 15-70 (99)
376 2xn4_A Kelch-like protein 2; s 88.5 8.9 0.0003 38.4 15.5 106 61-180 108-230 (302)
377 3ei3_A DNA damage-binding prot 88.5 30 0.001 42.1 22.3 145 62-247 844-999 (1158)
378 3ieg_A DNAJ homolog subfamily 88.4 2.2 7.4E-05 43.4 10.9 99 364-472 4-102 (359)
379 3fp2_A TPR repeat-containing p 88.4 1.1 3.8E-05 49.1 9.1 102 362-474 24-125 (537)
380 1hxi_A PEX5, peroxisome target 88.3 0.99 3.4E-05 38.7 6.9 66 409-477 22-87 (121)
381 1na3_A Designed protein CTPR2; 88.3 1.2 4E-05 35.1 6.9 66 408-476 13-78 (91)
382 3qky_A Outer membrane assembly 88.2 2.9 9.9E-05 40.9 11.3 111 360-477 12-133 (261)
383 2l6j_A TPR repeat-containing p 88.2 1.3 4.4E-05 36.4 7.4 64 408-474 8-71 (111)
384 4asc_A Kelch repeat and BTB do 88.1 23 0.00079 35.5 19.7 60 64-127 7-77 (315)
385 3qky_A Outer membrane assembly 88.0 6.2 0.00021 38.4 13.6 110 363-476 52-183 (261)
386 3ii7_A Kelch-like protein 7; p 88.0 11 0.00037 37.8 15.7 148 61-248 101-273 (306)
387 3urz_A Uncharacterized protein 87.8 2.4 8E-05 40.2 9.9 76 369-454 60-135 (208)
388 2yhc_A BAMD, UPF0169 lipoprote 87.6 4.9 0.00017 38.4 12.2 106 365-477 6-132 (225)
389 4abn_A Tetratricopeptide repea 87.6 2 6.9E-05 46.8 10.4 95 377-478 193-295 (474)
390 2yhc_A BAMD, UPF0169 lipoprote 87.5 7.5 0.00026 37.0 13.5 108 365-476 43-182 (225)
391 3gyz_A Chaperone protein IPGC; 87.1 0.97 3.3E-05 40.8 6.3 68 406-476 38-105 (151)
392 3bee_A Putative YFRE protein; 87.1 1.9 6.6E-05 35.2 7.5 49 425-473 27-75 (93)
393 4abn_A Tetratricopeptide repea 86.9 3.3 0.00011 45.1 11.7 106 361-477 100-215 (474)
394 2pzi_A Probable serine/threoni 86.7 1.3 4.5E-05 50.9 8.6 106 360-476 430-535 (681)
395 3amr_A 3-phytase; beta-propell 86.6 26 0.00088 36.2 17.2 180 40-246 59-262 (355)
396 4gco_A Protein STI-1; structur 86.6 1.2 4.2E-05 38.5 6.4 68 406-476 15-82 (126)
397 1w3b_A UDP-N-acetylglucosamine 86.4 5.2 0.00018 41.6 12.6 49 425-473 323-371 (388)
398 2r5s_A Uncharacterized protein 86.0 3.1 0.00011 37.9 9.4 50 426-475 93-142 (176)
399 1fch_A Peroxisomal targeting s 85.8 3.7 0.00013 42.1 11.0 100 367-476 68-167 (368)
400 3ma5_A Tetratricopeptide repea 85.7 0.56 1.9E-05 38.6 3.6 63 407-472 10-72 (100)
401 3hym_B Cell division cycle pro 85.6 6.6 0.00022 39.2 12.5 109 364-476 194-305 (330)
402 3das_A Putative oxidoreductase 85.4 18 0.00063 37.4 15.7 78 92-179 30-116 (347)
403 1fch_A Peroxisomal targeting s 84.8 5 0.00017 41.1 11.3 98 367-474 221-318 (368)
404 4eqf_A PEX5-related protein; a 84.7 2.5 8.4E-05 43.7 8.9 98 366-473 68-165 (365)
405 3as5_A MAMA; tetratricopeptide 84.7 10 0.00035 33.7 12.3 101 365-475 44-144 (186)
406 1w3b_A UDP-N-acetylglucosamine 84.7 6.3 0.00022 40.9 12.2 86 380-474 253-338 (388)
407 3u4t_A TPR repeat-containing p 84.6 6.1 0.00021 38.4 11.4 104 366-476 40-143 (272)
408 4eqf_A PEX5-related protein; a 84.3 2.4 8.1E-05 43.8 8.5 96 368-473 218-313 (365)
409 1cru_A Protein (soluble quinop 83.9 50 0.0017 35.4 20.2 66 93-168 26-100 (454)
410 2q7f_A YRRB protein; TPR, prot 83.7 4.3 0.00015 38.6 9.6 100 366-475 94-193 (243)
411 3das_A Putative oxidoreductase 83.3 45 0.0015 34.4 25.8 125 43-168 24-159 (347)
412 2woz_A Kelch repeat and BTB do 82.9 32 0.0011 34.5 16.4 59 64-127 18-88 (318)
413 2q7f_A YRRB protein; TPR, prot 82.8 13 0.00046 35.0 12.8 104 363-476 57-160 (243)
414 2zwa_A Leucine carboxyl methyl 82.7 28 0.00096 39.8 17.4 158 60-249 396-579 (695)
415 1zgk_A Kelch-like ECH-associat 82.7 23 0.00079 35.5 15.1 106 61-180 121-241 (308)
416 2be1_A Serine/threonine-protei 82.4 14 0.00048 38.1 13.2 111 63-183 11-134 (339)
417 3upv_A Heat shock protein STI1 82.2 2.5 8.5E-05 35.9 6.4 67 407-476 7-73 (126)
418 2uvk_A YJHT; unknown function, 82.1 15 0.00051 37.7 13.7 53 61-116 65-128 (357)
419 3ei3_A DNA damage-binding prot 82.1 72 0.0025 38.8 21.3 77 50-126 553-636 (1158)
420 3uq3_A Heat shock protein STI1 81.7 3.8 0.00013 39.2 8.4 101 362-473 4-111 (258)
421 3fp2_A TPR repeat-containing p 81.5 7.4 0.00025 42.3 11.6 108 370-478 385-499 (537)
422 3cv0_A Peroxisome targeting si 81.3 7.1 0.00024 38.9 10.6 101 366-476 24-124 (327)
423 3hym_B Cell division cycle pro 81.2 11 0.00037 37.6 12.0 101 365-475 24-125 (330)
424 2ho1_A Type 4 fimbrial biogene 81.1 15 0.00051 35.0 12.5 105 364-476 106-210 (252)
425 2g8s_A Glucose/sorbosone dehyd 80.9 34 0.0012 35.3 15.9 79 94-179 18-107 (353)
426 2vq2_A PILW, putative fimbrial 80.9 14 0.00049 34.1 12.0 96 364-469 9-105 (225)
427 4gcn_A Protein STI-1; structur 80.5 1.9 6.4E-05 37.2 5.0 52 422-473 23-74 (127)
428 3u4t_A TPR repeat-containing p 80.3 18 0.00061 34.9 13.0 101 366-477 6-110 (272)
429 2fo7_A Synthetic consensus TPR 80.3 11 0.00039 31.1 10.2 86 380-474 17-102 (136)
430 2ism_A Putative oxidoreductase 80.2 56 0.0019 33.5 19.6 63 50-114 74-153 (352)
431 3cv0_A Peroxisome targeting si 80.2 6.7 0.00023 39.1 9.9 99 365-473 174-272 (327)
432 3a9g_A Putative uncharacterize 80.1 57 0.002 33.5 20.5 111 50-166 72-215 (354)
433 1na3_A Designed protein CTPR2; 79.8 9.2 0.00032 29.5 8.8 81 365-455 11-91 (91)
434 1kt0_A FKBP51, 51 kDa FK506-bi 79.8 6.5 0.00022 42.5 10.1 85 368-462 322-406 (457)
435 2kat_A Uncharacterized protein 79.6 4.8 0.00017 33.4 7.3 51 426-476 4-54 (115)
436 2vgx_A Chaperone SYCD; alterna 79.5 3.2 0.00011 36.8 6.4 67 407-476 24-90 (148)
437 3mkr_A Coatomer subunit epsilo 79.5 7.5 0.00026 39.0 9.9 89 380-477 182-271 (291)
438 2fo7_A Synthetic consensus TPR 79.2 17 0.00058 29.9 10.9 84 380-472 51-134 (136)
439 2xcb_A PCRH, regulatory protei 79.1 3.5 0.00012 36.0 6.5 66 408-476 22-87 (142)
440 2ho1_A Type 4 fimbrial biogene 79.1 19 0.00065 34.2 12.5 48 426-473 124-173 (252)
441 3sz7_A HSC70 cochaperone (SGT) 78.7 3.4 0.00012 37.1 6.4 68 406-476 13-80 (164)
442 3as5_A MAMA; tetratricopeptide 78.3 8 0.00027 34.5 9.0 97 367-473 80-176 (186)
443 1p5q_A FKBP52, FK506-binding p 78.0 7.6 0.00026 39.9 9.6 87 365-461 198-284 (336)
444 3k9i_A BH0479 protein; putativ 77.6 1.9 6.4E-05 36.4 4.0 55 423-477 6-63 (117)
445 2wg3_C Hedgehog-interacting pr 77.5 16 0.00054 39.5 12.2 119 51-170 14-160 (463)
446 2vsy_A XCC0866; transferase, g 77.1 10 0.00034 42.1 11.0 104 361-474 55-161 (568)
447 2kck_A TPR repeat; tetratricop 77.0 5.1 0.00018 32.3 6.6 64 407-473 9-72 (112)
448 2vq2_A PILW, putative fimbrial 77.0 31 0.0011 31.6 13.1 98 369-475 48-147 (225)
449 2g8s_A Glucose/sorbosone dehyd 76.3 73 0.0025 32.7 25.6 112 51-168 18-149 (353)
450 2hr2_A Hypothetical protein; a 75.9 1.9 6.4E-05 39.3 3.6 55 421-475 25-98 (159)
451 1a17_A Serine/threonine protei 75.6 8.8 0.0003 33.7 8.3 94 364-467 48-143 (166)
452 2xpi_A Anaphase-promoting comp 75.2 12 0.0004 41.4 10.9 103 370-476 482-585 (597)
453 1qqe_A Vesicular transport pro 74.5 11 0.00039 37.4 9.6 96 377-476 132-234 (292)
454 2xev_A YBGF; tetratricopeptide 74.2 6.5 0.00022 33.0 6.7 53 423-475 18-73 (129)
455 3q49_B STIP1 homology and U bo 72.8 6.5 0.00022 33.4 6.4 68 406-476 11-78 (137)
456 1wao_1 Serine/threonine protei 71.8 6.2 0.00021 43.0 7.3 94 362-465 39-134 (477)
457 1xnf_A Lipoprotein NLPI; TPR, 71.7 17 0.00059 34.9 10.1 92 380-476 21-112 (275)
458 1elw_A TPR1-domain of HOP; HOP 70.2 9.8 0.00033 30.8 6.7 54 422-475 19-72 (118)
459 1ihg_A Cyclophilin 40; ppiase 69.4 12 0.00043 39.0 8.8 83 369-461 279-361 (370)
460 2e2e_A Formate-dependent nitri 68.9 11 0.00036 34.0 7.2 88 380-476 26-116 (177)
461 3mkr_A Coatomer subunit epsilo 67.7 25 0.00086 35.0 10.4 100 368-477 135-236 (291)
462 2lni_A Stress-induced-phosphop 67.4 10 0.00034 31.7 6.4 68 406-476 18-85 (133)
463 1qqe_A Vesicular transport pro 66.7 9.6 0.00033 38.0 7.0 105 368-475 82-192 (292)
464 3dra_A Protein farnesyltransfe 66.3 38 0.0013 34.2 11.3 109 360-475 29-144 (306)
465 1tl2_A L10, protein (tachylect 66.2 16 0.00055 35.1 7.8 52 632-687 92-162 (236)
466 2kc7_A BFR218_protein; tetratr 65.6 24 0.00082 27.8 8.1 67 369-445 6-73 (99)
467 2uvk_A YJHT; unknown function, 65.3 95 0.0033 31.4 14.6 49 72-124 168-224 (357)
468 2ifu_A Gamma-SNAP; membrane fu 64.7 8.6 0.00029 38.7 6.2 97 371-472 84-186 (307)
469 1dce_A Protein (RAB geranylger 63.6 17 0.00058 40.5 8.8 89 380-475 89-178 (567)
470 2v5f_A Prolyl 4-hydroxylase su 63.6 45 0.0016 27.0 9.5 79 367-482 9-87 (104)
471 2dba_A Smooth muscle cell asso 62.6 17 0.00059 30.9 7.1 54 422-475 43-99 (148)
472 1zu2_A Mitochondrial import re 62.4 10 0.00036 34.3 5.5 50 426-475 21-80 (158)
473 2vyi_A SGTA protein; chaperone 62.0 17 0.00058 29.9 6.8 54 422-475 27-80 (131)
474 2ond_A Cleavage stimulation fa 61.5 35 0.0012 34.0 10.1 89 381-475 33-133 (308)
475 3q7a_A Farnesyltransferase alp 61.5 59 0.002 33.5 11.7 109 359-475 49-159 (349)
476 2r5s_A Uncharacterized protein 61.1 2.9 9.8E-05 38.2 1.5 51 422-472 21-71 (176)
477 3ma5_A Tetratricopeptide repea 61.0 12 0.00039 30.3 5.2 41 436-476 2-42 (100)
478 2zwa_A Leucine carboxyl methyl 60.8 89 0.003 35.6 14.4 114 61-181 451-579 (695)
479 2ff4_A Probable regulatory pro 58.4 22 0.00076 37.4 8.1 107 359-469 111-233 (388)
480 1dce_A Protein (RAB geranylger 58.3 32 0.0011 38.2 9.8 95 375-475 40-143 (567)
481 3dra_A Protein farnesyltransfe 58.2 23 0.00079 35.9 7.9 91 379-475 84-180 (306)
482 1na0_A Designed protein CTPR3; 58.1 22 0.00076 28.8 6.8 54 422-475 24-77 (125)
483 2xpi_A Anaphase-promoting comp 57.7 81 0.0028 34.4 13.2 92 374-475 384-475 (597)
484 4gq2_M Nucleoporin NUP120; bet 56.4 36 0.0012 40.5 10.4 37 52-88 237-273 (950)
485 4g1t_A Interferon-induced prot 56.3 43 0.0015 35.4 10.3 103 366-475 250-368 (472)
486 3qou_A Protein YBBN; thioredox 53.7 8.8 0.0003 38.3 3.8 62 409-473 122-183 (287)
487 2if4_A ATFKBP42; FKBP-like, al 52.1 23 0.00077 36.3 6.8 76 369-454 236-311 (338)
488 2c2l_A CHIP, carboxy terminus 51.8 26 0.00088 34.6 7.0 66 408-476 8-73 (281)
489 3edt_B KLC 2, kinesin light ch 51.4 25 0.00086 33.7 6.8 107 360-470 40-156 (283)
490 2fbn_A 70 kDa peptidylprolyl i 50.4 39 0.0013 30.8 7.7 53 423-475 54-122 (198)
491 3rkv_A Putative peptidylprolyl 50.0 14 0.00048 32.7 4.3 53 423-475 27-97 (162)
492 3ro3_A PINS homolog, G-protein 48.1 33 0.0011 29.2 6.4 102 365-470 11-118 (164)
493 1pc2_A Mitochondria fission pr 48.1 31 0.0011 30.8 6.0 67 411-477 39-107 (152)
494 1elr_A TPR2A-domain of HOP; HO 47.5 12 0.00041 30.9 3.2 52 422-473 19-70 (131)
495 4a1s_A PINS, partner of inscut 47.0 32 0.0011 35.6 7.2 105 360-470 45-155 (411)
496 2xzh_A Clathrin heavy chain 1; 47.0 2.5E+02 0.0086 28.7 21.9 171 50-251 106-294 (365)
497 3q15_A PSP28, response regulat 46.9 39 0.0013 34.7 7.8 103 367-473 186-293 (378)
498 3ro2_A PINS homolog, G-protein 46.8 23 0.0008 34.8 5.8 104 363-472 5-114 (338)
499 3ulq_A Response regulator aspa 46.5 45 0.0015 34.3 8.2 100 368-471 189-294 (383)
500 3gw4_A Uncharacterized protein 46.2 56 0.0019 29.4 8.1 104 363-470 26-136 (203)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-40 Score=367.61 Aligned_cols=209 Identities=18% Similarity=0.306 Sum_probs=179.9
Q ss_pred cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEE
Q 004468 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (751)
Q Consensus 41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~ 120 (751)
.....|.+|.+.|++++|+|++++||||+.|++|+|||+.+++.+..+ .+|.+.|.+++|+|+ +.+|++|+.|++|+
T Consensus 99 ~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l-~~h~~~V~~v~~~~~--~~~l~sgs~D~~i~ 175 (410)
T 1vyh_C 99 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDHS--GKLLASCSADMTIK 175 (410)
T ss_dssp SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECTT--SSEEEEEETTSCCC
T ss_pred CceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEE-eccCCcEEEEEEcCC--CCEEEEEeCCCeEE
Confidence 346789999999999999999999999999999999999999998888 899999999999998 79999999999999
Q ss_pred EEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEec
Q 004468 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (751)
Q Consensus 121 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (751)
|||+... +++..+.+|...|.+++|+| ++.+|++|+.|++|++||++++... .
T Consensus 176 iwd~~~~----------~~~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~-----------~----- 228 (410)
T 1vyh_C 176 LWDFQGF----------ECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCV-----------K----- 228 (410)
T ss_dssp EEETTSS----------CEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEE-----------E-----
T ss_pred EEeCCCC----------ceeEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEE-----------E-----
Confidence 9999864 55788899999999999999 6789999999999999999887521 1
Q ss_pred ccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcccc
Q 004468 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (751)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (751)
...+|...|.++.++| ++.+|++|+.|+.|++||+++.+.... + .+|..
T Consensus 229 ---------~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~-------------~-------~~h~~- 277 (410)
T 1vyh_C 229 ---------TFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAE-------------L-------REHRH- 277 (410)
T ss_dssp ---------EEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEE-------------E-------CCCSS-
T ss_pred ---------EEeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeE-------------e-------cCCCc-
Confidence 1123667899999999 589999999999999999987643222 1 23433
Q ss_pred ceEEEEEcCC--------------------CCEEEEEeCCCcEEEEECCC
Q 004468 281 HLTHVTFSPN--------------------GEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 281 ~vt~v~fspd--------------------g~~Ll~~s~d~~I~lwdl~~ 310 (751)
.|++++|+|+ |.+|++++.|+.|++||+.+
T Consensus 278 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~ 327 (410)
T 1vyh_C 278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 327 (410)
T ss_dssp CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence 5999999996 66899999999999998766
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.4e-39 Score=348.06 Aligned_cols=213 Identities=23% Similarity=0.354 Sum_probs=182.0
Q ss_pred ccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004468 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (751)
Q Consensus 40 ~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V 119 (751)
++..++|++|.+.|++++|+|+|++||||+.||+|+|||+.++..+..+ ..|...|.+++|+|+ +++|++|+.|+.|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~l~s~~~d~~v 121 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI-PLRSSWVMTCAYAPS--GNYVACGGLDNIC 121 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECSSSCEEEEEECTT--SSEEEEEETTCEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe-ecCCccEEEEEECCC--CCEEEEEeCCCeE
Confidence 4567899999999999999999999999999999999999999999888 789999999999999 8999999999999
Q ss_pred EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (751)
Q Consensus 120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (751)
++|++....+. ......+.+|.+.|.++.|++ ++ .+++++.|++|++||+++++..
T Consensus 122 ~iw~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~~---------------- 177 (340)
T 1got_B 122 SIYNLKTREGN------VRVSRELAGHTGYLSCCRFLD-DN-QIVTSSGDTTCALWDIETGQQT---------------- 177 (340)
T ss_dssp EEEETTTCSBS------CEEEEEEECCSSCEEEEEEEE-TT-EEEEEETTSCEEEEETTTTEEE----------------
T ss_pred EEEECccCCCc------ceeEEEecCCCccEEEEEECC-CC-cEEEEECCCcEEEEECCCCcEE----------------
Confidence 99999864321 134567889999999999998 43 5889999999999999876521
Q ss_pred cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc
Q 004468 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (751)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (751)
.....|...|.+++|+| ++.+|++|+.|+.|++||+++...... + .+|..
T Consensus 178 ---------~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~-------------~-------~~h~~ 227 (340)
T 1got_B 178 ---------TTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT-------------F-------TGHES 227 (340)
T ss_dssp ---------EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEE-------------E-------CCCSS
T ss_pred ---------EEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEE-------------E-------cCCcC
Confidence 11234677899999999 478999999999999999987653322 2 23444
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 280 ~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
.|++++|+|+|++|++++.|+.|+|||+.+
T Consensus 228 -~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~ 257 (340)
T 1got_B 228 -DINAICFFPNGNAFATGSDDATCRLFDLRA 257 (340)
T ss_dssp -CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred -CEEEEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence 599999999999999999999999999877
No 3
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.7e-39 Score=341.94 Aligned_cols=214 Identities=14% Similarity=0.261 Sum_probs=183.3
Q ss_pred cccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCc
Q 004468 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (751)
Q Consensus 39 ~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~ 118 (751)
++++.++|++|.+.|++|+|+|+|++||+|+.||+|+|||+.++..+..+ .+|...|.+++|+|+ +++|++|+.|++
T Consensus 2 ~l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~s~s~d~~ 78 (304)
T 2ynn_A 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI-QVTETPVRAGKFIAR--KNWIIVGSDDFR 78 (304)
T ss_dssp CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEGG--GTEEEEEETTSE
T ss_pred cceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe-eccCCcEEEEEEeCC--CCEEEEECCCCE
Confidence 46778899999999999999999999999999999999999999999888 789999999999999 799999999999
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004468 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (751)
Q Consensus 119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (751)
|+|||+.++ +++..+.+|...|.+++|+| ++.+|++|+.||+|++||++++..+
T Consensus 79 i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~--------------- 132 (304)
T 2ynn_A 79 IRVFNYNTG----------EKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWAL--------------- 132 (304)
T ss_dssp EEEEETTTC----------CEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEE---------------
T ss_pred EEEEECCCC----------cEEEEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcch---------------
Confidence 999999865 55788999999999999999 6689999999999999999875321
Q ss_pred ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcc
Q 004468 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (751)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 278 (751)
.....+|...|.+++|+|.++.+|++|+.|+.|++||++...+...+. .++.
T Consensus 133 ---------~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~-------------------~~~~ 184 (304)
T 2ynn_A 133 ---------EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-------------------TGQE 184 (304)
T ss_dssp ---------EEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE-------------------CCCT
T ss_pred ---------hhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceec-------------------cCCc
Confidence 111234677899999999778999999999999999998654322110 1122
Q ss_pred ccceEEEEEcC--CCCEEEEEeCCCcEEEEECCC
Q 004468 279 SLHLTHVTFSP--NGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 279 ~~~vt~v~fsp--dg~~Ll~~s~d~~I~lwdl~~ 310 (751)
..+..+.|+| ++.+|++++.|+.|+|||+.+
T Consensus 185 -~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~ 217 (304)
T 2ynn_A 185 -RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217 (304)
T ss_dssp -TCEEEEEECCSTTCCEEEEEETTSEEEEEETTT
T ss_pred -CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC
Confidence 2588899987 788999999999999999876
No 4
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=7.7e-40 Score=357.53 Aligned_cols=228 Identities=24% Similarity=0.383 Sum_probs=188.9
Q ss_pred ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004468 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (751)
Q Consensus 38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg 117 (751)
..+.+.++|+||.+.|++++|+|+|++||||+.|++|+|||+.+++.+..+ .+|...|.+++|+|+ +++|++|+.|+
T Consensus 54 ~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~-~~h~~~v~~~~~s~~--g~~las~~~d~ 130 (380)
T 3iz6_a 54 TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI-KLHCPWVMECAFAPN--GQSVACGGLDS 130 (380)
T ss_dssp CCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE-ECCCTTCCCCEECTT--SSEEEECCSSS
T ss_pred ceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEE-ecCCCCEEEEEECCC--CCEEEEeeCCC
Confidence 355678899999999999999999999999999999999999999999988 799999999999999 89999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004468 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (751)
Q Consensus 118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l 197 (751)
.|+|||+...... .........+.+|.+.|.++.|.|+++..|++|+.|++|++||+++++.. . .
T Consensus 131 ~v~iw~~~~~~~~---~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~-----------~-~ 195 (380)
T 3iz6_a 131 ACSIFNLSSQADR---DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI-----------S-I 195 (380)
T ss_dssp CCEEEECCCCSSC---CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEE-----------E-E
T ss_pred cEEEEECCCCccc---cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEE-----------E-E
Confidence 9999999753211 11123456788999999999999977778999999999999999987532 0 0
Q ss_pred EecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCc
Q 004468 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (751)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 277 (751)
+. .....+|...|.+++|+|.++.+|++|+.|+.|++||++.... ++..+ .+|
T Consensus 196 ~~--------~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~------------~~~~~-------~~h 248 (380)
T 3iz6_a 196 FG--------SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR------------AVRTY-------HGH 248 (380)
T ss_dssp EC--------CCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC------------CCEEE-------CCC
T ss_pred ee--------cccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc------------ceEEE-------CCc
Confidence 10 1122347788999999987789999999999999999984321 11222 345
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468 278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 278 ~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
.. .|++++|+|+|++|++++.|++|+|||+.++
T Consensus 249 ~~-~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~ 281 (380)
T 3iz6_a 249 EG-DINSVKFFPDGQRFGTGSDDGTCRLFDMRTG 281 (380)
T ss_dssp SS-CCCEEEECTTSSEEEEECSSSCEEEEETTTT
T ss_pred CC-CeEEEEEecCCCeEEEEcCCCeEEEEECCCC
Confidence 44 5999999999999999999999999999884
No 5
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.7e-39 Score=349.97 Aligned_cols=220 Identities=17% Similarity=0.246 Sum_probs=180.1
Q ss_pred ccccccEEeccCCC-cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEE--EEecccCCcceEEEEEecCCCCcEEEEEE
Q 004468 38 RRLSQERELEGHQG-CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL--HSIETGHSANVFCTKFVPETSDELVVSGA 114 (751)
Q Consensus 38 ~~~~~~~~L~gH~~-~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~--~~l~~~h~~~V~~v~fsp~s~~~~l~sgs 114 (751)
..+.++++|.+|.+ .|++|+|+|+|++||+|+.|++|+|||+.++... ..+..+|...|.+++|+|+ +++|++|+
T Consensus 3 ~~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--g~~l~s~s 80 (345)
T 3fm0_A 3 DSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC--GNYLASAS 80 (345)
T ss_dssp -CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT--SSEEEEEE
T ss_pred ccEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC--CCEEEEEE
Confidence 35677889999998 9999999999999999999999999999877643 3344689999999999999 89999999
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004468 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (751)
Q Consensus 115 ~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~ 194 (751)
.|++|+|||+..... +++..+.+|...|.+++|+| ++.+|++|+.|++|++||++.+...
T Consensus 81 ~D~~v~iw~~~~~~~--------~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~----------- 140 (345)
T 3fm0_A 81 FDATTCIWKKNQDDF--------ECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEY----------- 140 (345)
T ss_dssp TTSCEEEEEECCC-E--------EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCE-----------
T ss_pred CCCcEEEEEccCCCe--------EEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCe-----------
Confidence 999999999975421 34678899999999999999 6789999999999999999875421
Q ss_pred eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004468 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (751)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (751)
.. +.....|...|.+++|+|+ +.+|++|+.|+.|++||.+..... +...+
T Consensus 141 ~~-----------~~~~~~h~~~v~~~~~~p~-~~~l~s~s~d~~i~~w~~~~~~~~-----------~~~~~------- 190 (345)
T 3fm0_A 141 EC-----------VSVLNSHTQDVKHVVWHPS-QELLASASYDDTVKLYREEEDDWV-----------CCATL------- 190 (345)
T ss_dssp EE-----------EEEECCCCSCEEEEEECSS-SSCEEEEETTSCEEEEEEETTEEE-----------EEEEE-------
T ss_pred EE-----------EEEecCcCCCeEEEEECCC-CCEEEEEeCCCcEEEEEecCCCEE-----------EEEEe-------
Confidence 00 1112346778999999995 789999999999999998754311 11111
Q ss_pred CCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 275 ~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
.+|.. .|++++|+|+|++|++++.|+.|+|||+..
T Consensus 191 ~~h~~-~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~ 225 (345)
T 3fm0_A 191 EGHES-TVWSLAFDPSGQRLASCSDDRTVRIWRQYL 225 (345)
T ss_dssp CCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred cCCCC-ceEEEEECCCCCEEEEEeCCCeEEEecccc
Confidence 34544 699999999999999999999999999644
No 6
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.2e-38 Score=337.45 Aligned_cols=212 Identities=20% Similarity=0.331 Sum_probs=183.5
Q ss_pred cccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCc
Q 004468 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (751)
Q Consensus 39 ~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~ 118 (751)
...+..+|.+|.+.|++++|+|+|++||+|+.|+.|+||++.+++....+ .+|...|.+++|+|+ +++|++|+.|+.
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~s~~~d~~ 88 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSD--SNLLVSASDDKT 88 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSE
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh-ccCCCceEEEEEcCC--CCEEEEECCCCE
Confidence 45677889999999999999999999999999999999999999988888 899999999999999 899999999999
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004468 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (751)
Q Consensus 119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (751)
|++||+... +++..+.+|...|.+++|+| ++.+|++|+.||+|++||+++++..
T Consensus 89 i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~--------------- 142 (312)
T 4ery_A 89 LKIWDVSSG----------KCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCL--------------- 142 (312)
T ss_dssp EEEEETTTC----------CEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEE---------------
T ss_pred EEEEECCCC----------cEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEE---------------
Confidence 999999864 55788899999999999999 6789999999999999999876521
Q ss_pred ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcc
Q 004468 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (751)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 278 (751)
.....|...|.+++|+| ++.+|++|+.|+.|++||+++.+.+..+. .+.
T Consensus 143 ----------~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--------------------~~~ 191 (312)
T 4ery_A 143 ----------KTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLI--------------------DDD 191 (312)
T ss_dssp ----------EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEEC--------------------CSS
T ss_pred ----------EEecCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEEe--------------------ccC
Confidence 11123567899999999 47899999999999999998765432210 111
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 279 ~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
...++.++|+|++++|++++.|+.|++||+.+
T Consensus 192 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 223 (312)
T 4ery_A 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223 (312)
T ss_dssp CCCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred CCceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 22589999999999999999999999999877
No 7
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9.6e-39 Score=371.20 Aligned_cols=277 Identities=15% Similarity=0.141 Sum_probs=201.5
Q ss_pred ccccEEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCc
Q 004468 40 LSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (751)
Q Consensus 40 ~~~~~~L~gH~~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~ 118 (751)
.+...+|.+|.+.|++++|+|++. +||||+.|++|+|||..+++++..+ .+|...|.+++|+|+ +++|+||+.|++
T Consensus 137 ~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l-~~H~~~V~~v~fspd--g~~las~s~D~~ 213 (611)
T 1nr0_A 137 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF-GEHTKFVHSVRYNPD--GSLFASTGGDGT 213 (611)
T ss_dssp CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSC
T ss_pred CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee-ccccCceEEEEECCC--CCEEEEEECCCc
Confidence 345678999999999999999987 6999999999999999999888888 899999999999999 899999999999
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeec-------ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCC--
Q 004468 119 VRLFNLSRFSGRGLDDNAITPSALYQ-------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS-- 189 (751)
Q Consensus 119 V~vwd~~~~~~~~~~~~~~~~~~~~~-------~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~-- 189 (751)
|+|||+..+ +++..+. +|.+.|.+++|+| ++.+|++++.|++|++||+++++........
T Consensus 214 i~lwd~~~g----------~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~ 282 (611)
T 1nr0_A 214 IVLYNGVDG----------TKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTR 282 (611)
T ss_dssp EEEEETTTC----------CEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred EEEEECCCC----------cEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCC
Confidence 999999864 3344442 7999999999999 6789999999999999999986533111000
Q ss_pred ------------------CCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 004468 190 ------------------HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (751)
Q Consensus 190 ------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~ 251 (751)
..+....+|+...+.. .....+|...|++++|+| ++.+|++++.|+.|++||+.+....
T Consensus 283 ~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~--~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~ 359 (611)
T 1nr0_A 283 IEDQQLGIIWTKQALVSISANGFINFVNPELGSI--DQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISN 359 (611)
T ss_dssp GGGCEEEEEECSSCEEEEETTCCEEEEETTTTEE--EEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEE
T ss_pred ccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCc--ceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCcee
Confidence 0111223444443322 223346888999999999 5899999999999999999876533
Q ss_pred cccCCCCC---------CCC---------ccc--------------------------cccccc----------------
Q 004468 252 TSCQKRMS---------PPP---------CVN--------------------------YFCPMH---------------- 271 (751)
Q Consensus 252 ~~~~~~~~---------~~~---------~~~--------------------------~~~~~~---------------- 271 (751)
..+..... +.. .++ .+.+..
T Consensus 360 ~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~ 439 (611)
T 1nr0_A 360 RVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH 439 (611)
T ss_dssp ECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEET
T ss_pred eecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeC
Confidence 22110000 000 000 000000
Q ss_pred --cccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcc-eeeeecCCCceeEEeCCCCC
Q 004468 272 --LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR-AMRYTVGDASKIMSFTPTLN 334 (751)
Q Consensus 272 --~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~-~~~~~~~~~~~~~~~sp~~~ 334 (751)
+....+ ...+++++|+|||++|++++.|+.|+|||+.++... .....+...+..++|+|+..
T Consensus 440 ~~~~~~~~-~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~ 504 (611)
T 1nr0_A 440 GKLTEVPI-SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA 504 (611)
T ss_dssp TEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS
T ss_pred Cceeeeec-CCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCC
Confidence 000001 235889999999999999999999999999875321 12245666778888888654
No 8
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.6e-39 Score=341.36 Aligned_cols=208 Identities=18% Similarity=0.295 Sum_probs=173.3
Q ss_pred ccEEeccCCCcEEEEEECCC----CCEEEEEeCCCcEEEEeCCCCeE--EEEecccCCcceEEEEEecCCCCcEEEEEEC
Q 004468 42 QERELEGHQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (751)
Q Consensus 42 ~~~~L~gH~~~V~~l~~s~d----g~~LaSgs~Dg~I~IWd~~~~~~--~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~ 115 (751)
+.+.+++|.+.|++|+|+|+ +.+||||+.|++|+||++..+.. ...+ .+|...|.+++|+|+ +.++++|+.
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l-~gh~~~v~~~~~~~~--~~~l~s~s~ 100 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL-EGHQLGVVSVDISHT--LPIAASSSL 100 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECSS--SSEEEEEET
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeee-ccCCCCEEEEEECCC--CCEEEEEeC
Confidence 34677899999999999984 67999999999999999877654 3345 899999999999999 799999999
Q ss_pred CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccce
Q 004468 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (751)
Q Consensus 116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~ 195 (751)
|++|++||+..+ +++..+..|...+.+++|+| ++.+|++++.||+|++||+++++..
T Consensus 101 D~~i~lWd~~~~----------~~~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~------------ 157 (321)
T 3ow8_A 101 DAHIRLWDLENG----------KQIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKE------------ 157 (321)
T ss_dssp TSEEEEEETTTT----------EEEEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEE------------
T ss_pred CCcEEEEECCCC----------CEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCcee------------
Confidence 999999999864 45778888999999999999 6789999999999999999876521
Q ss_pred EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccC
Q 004468 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (751)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (751)
.. ...+...|.+++|+| ++++|++|+.|+.|++||+++.+.+..+ .
T Consensus 158 --~~-----------~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~~--------------------~ 203 (321)
T 3ow8_A 158 --YS-----------LDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTL--------------------E 203 (321)
T ss_dssp --EE-----------EECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEE--------------------C
T ss_pred --EE-----------ecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEE--------------------c
Confidence 00 112445799999999 5899999999999999999876543222 2
Q ss_pred CccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 276 g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
+|.. .|++++|+|++++|++++.|+.|+|||+.+
T Consensus 204 ~h~~-~v~~l~~spd~~~l~s~s~dg~i~iwd~~~ 237 (321)
T 3ow8_A 204 GHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQH 237 (321)
T ss_dssp CCSS-CCCEEEECTTSCEEEEECTTSCEEEEETTT
T ss_pred ccCC-ceeEEEEcCCCCEEEEEcCCCeEEEEECCC
Confidence 3433 599999999999999999999999999876
No 9
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.3e-38 Score=342.45 Aligned_cols=217 Identities=19% Similarity=0.287 Sum_probs=182.8
Q ss_pred ccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004468 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (751)
Q Consensus 40 ~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V 119 (751)
++..++|+||.+.|++++|+|++++||||+.|++|+|||..+++....+ ..|...|.+++|+|+ +.+|++|+.|+.|
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~~~~~~v~~~~~sp~--g~~lasg~~d~~i 130 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV-TMPCTWVMACAYAPS--GCAIACGGLDNKC 130 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSSCCCEEEECTT--SSEEEEESTTSEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEE-ecCCCCEEEEEECCC--CCEEEEeeCCCCE
Confidence 3567899999999999999999999999999999999999999888888 789999999999999 8999999999999
Q ss_pred EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (751)
Q Consensus 120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (751)
++|++....... .......+.+|...|.+++|+| ++..|++++.||+|++||+++++..
T Consensus 131 ~v~~~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~---------------- 189 (354)
T 2pbi_B 131 SVYPLTFDKNEN----MAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQLL---------------- 189 (354)
T ss_dssp EEEECCCCTTCC----SGGGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEE----------------
T ss_pred EEEEEecccccc----ccccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEE----------------
Confidence 999997532111 1134567788999999999999 6688999999999999999887521
Q ss_pred cccCceecccCCCCCccceEEEEEeCC-CCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcc
Q 004468 200 LRCGAKRSLADPPKQTLSLKSCDISST-RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (751)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 278 (751)
....+|...|.+++|+|. ++.+|++|+.|+.|++||+++.+.+.. + .+|.
T Consensus 190 ---------~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~-------------~-------~~h~ 240 (354)
T 2pbi_B 190 ---------QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA-------------F-------ETHE 240 (354)
T ss_dssp ---------EEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEE-------------E-------CCCS
T ss_pred ---------EEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEE-------------e-------cCCC
Confidence 111236678999999885 358999999999999999997653322 2 2344
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 279 ~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
. .|++++|+|++.+|++++.|+.|++||+..
T Consensus 241 ~-~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~ 271 (354)
T 2pbi_B 241 S-DVNSVRYYPSGDAFASGSDDATCRLYDLRA 271 (354)
T ss_dssp S-CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred C-CeEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 4 599999999999999999999999999877
No 10
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.1e-38 Score=341.90 Aligned_cols=212 Identities=17% Similarity=0.178 Sum_probs=159.3
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeC------CCcEEEEeCCCCeEEEEe---cccCCcceEEEEEecCCCCcEEEEEEC
Q 004468 45 ELEGHQGCVNAISWNSKGSLLISGSD------DTHINVWSYSSRKLLHSI---ETGHSANVFCTKFVPETSDELVVSGAG 115 (751)
Q Consensus 45 ~L~gH~~~V~~l~~s~dg~~LaSgs~------Dg~I~IWd~~~~~~~~~l---~~~h~~~V~~v~fsp~s~~~~l~sgs~ 115 (751)
...+|.+.|++|+|+|||++|||||. |+.|++|+..++.....+ ..+|...|.+++|+|+ + .+++++.
T Consensus 37 ~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d--~-~~l~~s~ 113 (357)
T 4g56_B 37 APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSE--K-GILVASD 113 (357)
T ss_dssp ---CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETT--T-EEEEEET
T ss_pred CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCC--C-CEEEEEC
Confidence 34679999999999999999999997 778999998776543322 1478999999999998 4 5667889
Q ss_pred CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccce
Q 004468 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (751)
Q Consensus 116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~ 195 (751)
|++|+|||+.++.... .......+|...|++++|+| ++.+|++|+.||+|++||+++++..
T Consensus 114 dg~v~lWd~~~~~~~~------~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~------------ 174 (357)
T 4g56_B 114 SGAVELWEILEKESLL------VNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVL------------ 174 (357)
T ss_dssp TSCEEEC--------C------CCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEE------------
T ss_pred CCEEEEeeccccceeE------EEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEE------------
Confidence 9999999998653221 12234568999999999999 6789999999999999999886521
Q ss_pred EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccC
Q 004468 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (751)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (751)
.....|...|++++|+|++..++++++.|+.|++||+++.++...+.. .
T Consensus 175 -------------~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~------------------~ 223 (357)
T 4g56_B 175 -------------KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF------------------C 223 (357)
T ss_dssp -------------EEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC------------------T
T ss_pred -------------EEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee------------------c
Confidence 112346778999999997667899999999999999998764432210 1
Q ss_pred CccccceEEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 004468 276 GRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 276 g~~~~~vt~v~fspdg-~~Ll~~s~d~~I~lwdl~~ 310 (751)
.+ ...+++++|+|++ .+|++++.|+.|+|||+.+
T Consensus 224 ~~-~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~ 258 (357)
T 4g56_B 224 AS-DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN 258 (357)
T ss_dssp TC-CSCEEEEEECTTSTTEEEEEESSSCEEEEESSC
T ss_pred cc-cccccchhhhhcccceEEEeecccceeEEECCC
Confidence 12 2259999999985 5788899999999999876
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.8e-38 Score=340.17 Aligned_cols=208 Identities=17% Similarity=0.168 Sum_probs=159.4
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC-----------eEEEEecccCCcceEEEEEecCCCCcEEEEEEC
Q 004468 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-----------KLLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (751)
Q Consensus 47 ~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~-----------~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~ 115 (751)
..|...|.+++|+|||++|++++ |+++++||.... ...... ..|...|.+++|+|+ ..|++|+.
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~d---~~l~~~s~ 101 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAG-VQTEAGVADLTWVGE---RGILVASD 101 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEE-EEESSCEEEEEEETT---TEEEEEET
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeee-eccCCCEEEEEEeCC---CeEEEEEC
Confidence 45778899999999999999988 678888873210 011111 246678999999998 47889999
Q ss_pred CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccce
Q 004468 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (751)
Q Consensus 116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~ 195 (751)
||+|+|||+.++.... .....+.+|.+.|++++|+| ++++|++|+.||+|++||+++++..
T Consensus 102 dg~v~lWd~~~~~~~~------~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~------------ 162 (344)
T 4gqb_B 102 SGAVELWELDENETLI------VSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVL------------ 162 (344)
T ss_dssp TSEEEEEEECTTSSCE------EEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEE------------
T ss_pred CCEEEEEeccCCCcee------EeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEE------------
Confidence 9999999998653211 11233558999999999999 6789999999999999999886521
Q ss_pred EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccC
Q 004468 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (751)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (751)
....+|...|++++|+|++..+|++|+.|+.|++||+++.+....+.. .
T Consensus 163 -------------~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~------------------~ 211 (344)
T 4gqb_B 163 -------------SSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC------------------S 211 (344)
T ss_dssp -------------EEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--------------------
T ss_pred -------------EEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec------------------c
Confidence 122347789999999997767999999999999999998765433210 1
Q ss_pred CccccceEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q 004468 276 GRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 276 g~~~~~vt~v~fspd-g~~Ll~~s~d~~I~lwdl~~ 310 (751)
.....+++++|+|+ +++|++|+.|+.|+|||+.+
T Consensus 212 -~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~ 246 (344)
T 4gqb_B 212 -APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS 246 (344)
T ss_dssp ---CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC
T ss_pred -eeeccceeeeecCCCCcceEEeccCCcEEEEECCC
Confidence 11224899999995 56788899999999999876
No 12
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.3e-37 Score=331.50 Aligned_cols=212 Identities=19% Similarity=0.303 Sum_probs=177.8
Q ss_pred ccccccEEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCC-----CeEEEEecccCCcceEEEEEecCCCCcEEE
Q 004468 38 RRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSS-----RKLLHSIETGHSANVFCTKFVPETSDELVV 111 (751)
Q Consensus 38 ~~~~~~~~L~gH~~~V~~l~~s~dg-~~LaSgs~Dg~I~IWd~~~-----~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~ 111 (751)
+.+.+..+|+||.+.|++|+|+|++ ++|+||+.|++|+||++.. +..+..+ .+|...|.+++|+|+ +.+|+
T Consensus 5 ~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~d--g~~l~ 81 (319)
T 3frx_A 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTAD--GAYAL 81 (319)
T ss_dssp EEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEE-ECCSSCEEEEEECTT--SSEEE
T ss_pred eEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEE-eCCcccEEEEEECCC--CCEEE
Confidence 3466778999999999999999965 8999999999999999853 3345666 799999999999999 89999
Q ss_pred EEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCC
Q 004468 112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 191 (751)
Q Consensus 112 sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~ 191 (751)
+|+.|++|+|||+.++ +++..+.+|...|.+++|+| ++.+|++|+.||+|++||++...
T Consensus 82 s~s~D~~v~~wd~~~~----------~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~~~---------- 140 (319)
T 3frx_A 82 SASWDKTLRLWDVATG----------ETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQC---------- 140 (319)
T ss_dssp EEETTSEEEEEETTTT----------EEEEEEECCSSCEEEEEECT-TSCEEEEEETTSCEEEEETTSCE----------
T ss_pred EEeCCCEEEEEECCCC----------CeeEEEccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCe----------
Confidence 9999999999999865 55788999999999999999 67899999999999999986431
Q ss_pred ccceEEEecccCceecccCCCCCccceEEEEEeCC-----CCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccc
Q 004468 192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST-----RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (751)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~-----~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~ 266 (751)
+....+|...|.++.|+|. ++.+|++++.|+.|++||++..+....
T Consensus 141 ----------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~------------- 191 (319)
T 3frx_A 141 ----------------LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD------------- 191 (319)
T ss_dssp ----------------EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEE-------------
T ss_pred ----------------EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhee-------------
Confidence 1112236678999999984 245899999999999999986542211
Q ss_pred ccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
+ .+|.. .|++++|+|+|++|++++.|+.|+|||+.+
T Consensus 192 ~-------~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~ 227 (319)
T 3frx_A 192 F-------IGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAA 227 (319)
T ss_dssp E-------CCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred e-------cCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 1 23444 699999999999999999999999999877
No 13
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.2e-37 Score=361.85 Aligned_cols=229 Identities=16% Similarity=0.158 Sum_probs=183.7
Q ss_pred cccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC--eEEEEecccCCcceEEEEEecCC
Q 004468 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPET 105 (751)
Q Consensus 28 ~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~--~~~~~l~~~h~~~V~~v~fsp~s 105 (751)
+.+.+|+. ...+...+|.+|.+.|++++|+|+|++||||+.|++|+|||+.++ .....+ .+|.+.|.+++|+|+
T Consensus 39 ~~v~l~~~--~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~-~~~~~~v~~v~fs~d- 114 (611)
T 1nr0_A 39 TSVYTVPV--GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI-PVFSGPVKDISWDSE- 114 (611)
T ss_dssp TEEEEEET--TCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE-ECSSSCEEEEEECTT-
T ss_pred CEEEEecC--CCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEee-cccCCceEEEEECCC-
Confidence 45566653 355678899999999999999999999999999999999998654 344455 789999999999999
Q ss_pred CCcEEEEEECC----CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCC
Q 004468 106 SDELVVSGAGD----AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (751)
Q Consensus 106 ~~~~l~sgs~D----g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~ 181 (751)
+++|++++.+ +.|++||.. .+...+.+|...|.+++|+|+++..|++|+.|++|++||..+.+
T Consensus 115 -g~~l~~~~~~~~~~~~v~~wd~~------------~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~ 181 (611)
T 1nr0_A 115 -SKRIAAVGEGRERFGHVFLFDTG------------TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK 181 (611)
T ss_dssp -SCEEEEEECCSSCSEEEEETTTC------------CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE
T ss_pred -CCEEEEEECCCCceeEEEEeeCC------------CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe
Confidence 7899988865 478888854 33667889999999999999666679999999999999976543
Q ss_pred CCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCC
Q 004468 182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 261 (751)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~ 261 (751)
. +....+|...|.+++|+| ++.+|++|+.|++|++||+.+++.+..+.
T Consensus 182 ~-------------------------~~~l~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g~~~~~~~------ 229 (611)
T 1nr0_A 182 F-------------------------KSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFE------ 229 (611)
T ss_dssp E-------------------------EEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECB------
T ss_pred E-------------------------eeeeccccCceEEEEECC-CCCEEEEEECCCcEEEEECCCCcEeeeec------
Confidence 1 111234778999999999 48999999999999999998765433221
Q ss_pred CccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc
Q 004468 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG 313 (751)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~ 313 (751)
...+...+|.. .|++++|+|+|++|++++.|++|+|||+.++..
T Consensus 230 -------~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~ 273 (611)
T 1nr0_A 230 -------DDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKV 273 (611)
T ss_dssp -------CTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred -------cccccccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Confidence 00111124554 699999999999999999999999999998643
No 14
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-37 Score=330.04 Aligned_cols=224 Identities=15% Similarity=0.193 Sum_probs=170.6
Q ss_pred ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC--eEEEEeccc-CCcceEEEEEecCCCCcEEEEEE
Q 004468 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETG-HSANVFCTKFVPETSDELVVSGA 114 (751)
Q Consensus 38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~--~~~~~l~~~-h~~~V~~v~fsp~s~~~~l~sgs 114 (751)
..++++++|++|.+.|++++|+++ +||+|+.|++|+|||+..+ ..+..+..+ |...|.+++|+|+ +++|++|+
T Consensus 2 ~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~--~~~las~s 77 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH--TSLLAAGS 77 (330)
T ss_dssp -CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT--SSEEEEEE
T ss_pred cccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC--CCEEEEEe
Confidence 356678899999999999999987 9999999999999999865 445555234 9999999999999 79999999
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004468 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (751)
Q Consensus 115 ~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~ 194 (751)
.|++|+|||+...... ....+++..+.+|...|.+++|+| ++.+|++|+.|++|++||++..... ..+
T Consensus 78 ~D~~v~iw~~~~~~~~---~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~-------~~~- 145 (330)
T 2hes_X 78 FDSTVSIWAKEESADR---TFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEE-------YEC- 145 (330)
T ss_dssp TTSCEEEEEC----------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCC-------CEE-
T ss_pred CCCcEEEEEcccCcCc---cccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCC-------eEE-
Confidence 9999999999642110 001245677899999999999999 6789999999999999999643210 000
Q ss_pred eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004468 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (751)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (751)
+.....|...|.+++|+|+ +.+|++|+.|++|++||.+.... .++..+
T Consensus 146 -------------~~~~~~h~~~v~~v~~~p~-~~~l~s~s~D~~i~iW~~~~~~~-----------~~~~~~------- 193 (330)
T 2hes_X 146 -------------ISVLQEHSQDVKHVIWHPS-EALLASSSYDDTVRIWKDYDDDW-----------ECVAVL------- 193 (330)
T ss_dssp -------------EEEECCCSSCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEE-----------EEEEEE-------
T ss_pred -------------EEEeccCCCceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCe-----------eEEEEc-------
Confidence 1112346778999999994 78999999999999999865310 112222
Q ss_pred CCccccceEEEEEcCC--CCEEEEEeCCCcEEEEECCC
Q 004468 275 HGRSSLHLTHVTFSPN--GEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 275 ~g~~~~~vt~v~fspd--g~~Ll~~s~d~~I~lwdl~~ 310 (751)
.+|.. .|++++|+|+ +.+|++++.|++|+|||+..
T Consensus 194 ~~h~~-~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 194 NGHEG-TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp CCCSS-CEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred cCCCC-cEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence 34544 6999999999 77899999999999999765
No 15
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.9e-37 Score=336.87 Aligned_cols=208 Identities=19% Similarity=0.302 Sum_probs=168.8
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCC------------------cceEEEEEecCCCCcE
Q 004468 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS------------------ANVFCTKFVPETSDEL 109 (751)
Q Consensus 48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~------------------~~V~~v~fsp~s~~~~ 109 (751)
+|.+.|++++|+|+|++||+|+ |++++||++.+++.+..+ ..|. ..|.+++|+|+ +++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d--g~~ 137 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARL-SDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD--GKF 137 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEE-CC-----------------CCCCBEEEEEECTT--SSE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEe-cCccccccccccccccccCCCceeEEEEEECCC--CCE
Confidence 6999999999999999999987 689999999999888777 4443 24999999999 899
Q ss_pred EEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCC
Q 004468 110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS 189 (751)
Q Consensus 110 l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~ 189 (751)
|++|+.|++|+|||+... +.+..+.+|...|.+++|+| ++.+|++++.|++|++||+++++..
T Consensus 138 l~s~~~d~~i~iwd~~~~----------~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~------ 200 (393)
T 1erj_A 138 LATGAEDRLIRIWDIENR----------KIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCS------ 200 (393)
T ss_dssp EEEEETTSCEEEEETTTT----------EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE------
T ss_pred EEEEcCCCeEEEEECCCC----------cEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCeeE------
Confidence 999999999999999864 45778899999999999999 6689999999999999999886521
Q ss_pred CCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccc
Q 004468 190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP 269 (751)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (751)
.. +. +...+.+++|+|.++.+|++|+.|+.|++||+++...+..+..
T Consensus 201 -----~~-~~--------------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~------------- 247 (393)
T 1erj_A 201 -----LT-LS--------------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS------------- 247 (393)
T ss_dssp -----EE-EE--------------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------------
T ss_pred -----EE-EE--------------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecc-------------
Confidence 01 10 2346899999997789999999999999999987654332211
Q ss_pred cccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 270 ~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
......+|.. .|++++|+|+|++|++++.|+.|+|||+.+
T Consensus 248 ~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 248 ENESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp -----CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cccCCCCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 0011123444 699999999999999999999999999877
No 16
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.1e-36 Score=322.39 Aligned_cols=213 Identities=20% Similarity=0.283 Sum_probs=175.1
Q ss_pred cccccEEeccCCCcEEEEEE-----CC-CCCEEEEEeCCCcEEEEeCCCC-------eEEEEecccCCcceEEEEEecCC
Q 004468 39 RLSQERELEGHQGCVNAISW-----NS-KGSLLISGSDDTHINVWSYSSR-------KLLHSIETGHSANVFCTKFVPET 105 (751)
Q Consensus 39 ~~~~~~~L~gH~~~V~~l~~-----s~-dg~~LaSgs~Dg~I~IWd~~~~-------~~~~~l~~~h~~~V~~v~fsp~s 105 (751)
.+.+..+|+||++.|++|+| ++ ++++||||+.|++|+|||+.+. .....+ .+|...|.+++|+|+
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l-~~h~~~V~~~~~~~~- 87 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL-TGHNHFVSDLALSQE- 87 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEE-CCCSSCEEEEEECSS-
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchh-ccCCCceEEEEECCC-
Confidence 45667899999999999999 76 9999999999999999998643 345556 899999999999999
Q ss_pred CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004468 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (751)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~ 185 (751)
+.+|++|+.|++|+|||+.++ +++..+.+|...|.+++|+| ++.+|++++.|++|++||++....
T Consensus 88 -~~~l~s~s~D~~v~lwd~~~~----------~~~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~--- 152 (343)
T 2xzm_R 88 -NCFAISSSWDKTLRLWDLRTG----------TTYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECK--- 152 (343)
T ss_dssp -TTEEEEEETTSEEEEEETTSS----------CEEEEEECCCSCEEEEEECS-STTEEEEEETTSCEEEEESSSCEE---
T ss_pred -CCEEEEEcCCCcEEEEECCCC----------cEEEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCce---
Confidence 799999999999999999864 45788899999999999999 678999999999999999874210
Q ss_pred CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC---------CcEEEEEeCCCeEEEEeCCCCCCccccCC
Q 004468 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR---------PHLLLVGGSDAFARLYDRRMLPPLTSCQK 256 (751)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~---------~~~l~sgs~D~~IriwD~~~~~~~~~~~~ 256 (751)
........|...|.+++|+|.. +.+|++++.|+.|++||... ..
T Consensus 153 --------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~------ 205 (343)
T 2xzm_R 153 --------------------FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QI------ 205 (343)
T ss_dssp --------------------EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EE------
T ss_pred --------------------eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-ce------
Confidence 0111223467789999999963 26899999999999999432 11
Q ss_pred CCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
...+ .+|.. .|++++|+|+|++|++++.|+.|+|||+..
T Consensus 206 -------~~~~-------~~h~~-~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 206 -------RYTF-------KAHES-NVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp -------EEEE-------ECCSS-CEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred -------eEEE-------cCccc-cceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 1111 23443 599999999999999999999999999854
No 17
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2e-36 Score=348.41 Aligned_cols=238 Identities=21% Similarity=0.341 Sum_probs=192.3
Q ss_pred ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004468 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~ 106 (751)
+..+++|+. ..+++..+.+|...|++++|+|+|++|++++.|+.|++||.. ++.+..+ .+|...|.+++|+|+
T Consensus 242 d~~i~~w~~---~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~-~~h~~~v~~~~~~~~-- 314 (577)
T 2ymu_A 242 DKTVKLWNR---NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTL-TGHSSSVWGVAFSPD-- 314 (577)
T ss_dssp TSCEEEECT---TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEE-CCCSSCEEEEEECTT--
T ss_pred CCEEEEEeC---CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEE-ecCCCCeEEEEECCC--
Confidence 456777763 346778899999999999999999999999999999999964 6677777 899999999999999
Q ss_pred CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004468 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (751)
Q Consensus 107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~ 186 (751)
+.+|++++.|++|++||+.. ..+..+.+|...|.+++|+| ++.+|++++.||+|++||... +.
T Consensus 315 ~~~l~t~~~d~~i~~w~~~~-----------~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~~~-~~---- 377 (577)
T 2ymu_A 315 GQTIASASDDKTVKLWNRNG-----------QHLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNG-QL---- 377 (577)
T ss_dssp SSEEEEEETTSCEEEEETTS-----------CEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTC-CE----
T ss_pred CCEEEEEeCCCeEEEEeCCC-----------CeeEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcCCC-CE----
Confidence 89999999999999999874 34677889999999999999 678999999999999999532 21
Q ss_pred CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccc
Q 004468 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (751)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~ 266 (751)
+.....|...|++++|+| ++++|++++.|+.|++||.. .+. +..
T Consensus 378 ---------------------~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~~-~~~-------------~~~ 421 (577)
T 2ymu_A 378 ---------------------LQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRN-GQL-------------LQT 421 (577)
T ss_dssp ---------------------EEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECTT-CCE-------------EEE
T ss_pred ---------------------EEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCC-CCE-------------EEE
Confidence 011123567899999999 57999999999999999953 221 111
Q ss_pred ccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCC
Q 004468 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (751)
Q Consensus 267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~ 333 (751)
+ .+|.. .|++++|+||+++|++++.|+.|++||+.. ........+...+..++|+|+.
T Consensus 422 ~-------~~~~~-~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~~~~~~~~~~~v~~~~~spd~ 479 (577)
T 2ymu_A 422 L-------TGHSS-SVWGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDG 479 (577)
T ss_dssp E-------ECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTS-CEEEEEECCSSCEEEEEECTTS
T ss_pred e-------cCCCC-CeEEEEECCCCCEEEEEcCCCEEEEEECCC-CEEEEEcCCCCCEEEEEEcCCC
Confidence 1 23433 599999999999999999999999999754 4444455566666777777754
No 18
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=8.5e-36 Score=318.21 Aligned_cols=223 Identities=21% Similarity=0.306 Sum_probs=177.9
Q ss_pred ccccchhhhccccccEEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCe-----EEEEecccCCcceEEEEEe
Q 004468 29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRK-----LLHSIETGHSANVFCTKFV 102 (751)
Q Consensus 29 ~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~d-g~~LaSgs~Dg~I~IWd~~~~~-----~~~~l~~~h~~~V~~v~fs 102 (751)
.+.+.....+++.+..+|+||++.|++|+|+|+ +++|||||.|++|+|||+.+.. +...+ .+|...|.+++|+
T Consensus 17 ~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l-~~h~~~V~~~~~s 95 (340)
T 4aow_A 17 NLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL-RGHSHFVSDVVIS 95 (340)
T ss_dssp ---------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEE-CCCSSCEEEEEEC
T ss_pred cEEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEE-eCCCCCEEEEEEC
Confidence 345556677888888999999999999999997 6899999999999999987543 45556 8999999999999
Q ss_pred cCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004468 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (751)
Q Consensus 103 p~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~ 182 (751)
|+ +++|++|+.|+.|++|+.... ........+...+..+.+++ .+.+|++++.|+.+++||+.....
T Consensus 96 ~d--g~~l~s~~~d~~i~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~ 162 (340)
T 4aow_A 96 SD--GQFALSGSWDGTLRLWDLTTG----------TTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCK 162 (340)
T ss_dssp TT--SSEEEEEETTSEEEEEETTTT----------EEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEE
T ss_pred CC--CCEEEEEcccccceEEeeccc----------ceeeeecCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCce
Confidence 99 899999999999999999864 34566677888899999998 667889999999999999876431
Q ss_pred CCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC-CcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCC
Q 004468 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 261 (751)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~ 261 (751)
. ......+...+..++|+++. ..++++++.|+.|++||+++.+.+..+
T Consensus 163 ~------------------------~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~------- 211 (340)
T 4aow_A 163 Y------------------------TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH------- 211 (340)
T ss_dssp E------------------------EECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEE-------
T ss_pred E------------------------EEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEe-------
Confidence 1 11223366788999998854 357889999999999999876533221
Q ss_pred CccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
.+|.. .|++++|+|+|++|++++.|+.|+|||+.+
T Consensus 212 -------------~~h~~-~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~ 246 (340)
T 4aow_A 212 -------------IGHTG-YLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246 (340)
T ss_dssp -------------CCCSS-CEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred -------------cCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEEecc
Confidence 23444 699999999999999999999999999877
No 19
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.3e-35 Score=339.52 Aligned_cols=238 Identities=21% Similarity=0.323 Sum_probs=191.6
Q ss_pred ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004468 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~ 106 (751)
+..+++|+. ..++.+.+.+|.+.|.+++|+|+|++|++|+.|+.|++||. +++.+..+ .+|...|.+++|+|+
T Consensus 201 d~~v~~w~~---~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~-~~~~~~v~~v~~~~d-- 273 (577)
T 2ymu_A 201 DKTVKLWNR---NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-TGHSSSVNGVAFRPD-- 273 (577)
T ss_dssp TSEEEEECT---TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEE-CCCSSCEEEEEECTT--
T ss_pred CCEEEEEeC---CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEE-ecCCCCEEEEEEcCC--
Confidence 456666652 45677889999999999999999999999999999999996 46677777 899999999999999
Q ss_pred CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004468 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (751)
Q Consensus 107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~ 186 (751)
+++|++++.|+.|++||... +.+..+.+|...|.+++|+| ++.+|++++.||+|++||+....
T Consensus 274 ~~~l~~~~~d~~i~~w~~~~-----------~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~~~----- 336 (577)
T 2ymu_A 274 GQTIASASDDKTVKLWNRNG-----------QLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQH----- 336 (577)
T ss_dssp SSEEEEEETTSCEEEEETTS-----------CEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSCE-----
T ss_pred CCEEEEEeCCCEEEEEeCCC-----------cEEEEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCe-----
Confidence 89999999999999999763 45778899999999999999 67899999999999999976532
Q ss_pred CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccc
Q 004468 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (751)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~ 266 (751)
+.....+...|.+++|+| ++.+|++|+.|+.|++||.. .+. +..
T Consensus 337 ---------------------~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~~-~~~-------------~~~ 380 (577)
T 2ymu_A 337 ---------------------LQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRN-GQL-------------LQT 380 (577)
T ss_dssp ---------------------EEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT-CCE-------------EEE
T ss_pred ---------------------eEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcCC-CCE-------------EEE
Confidence 111123567899999999 47999999999999999954 221 111
Q ss_pred ccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCC
Q 004468 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (751)
Q Consensus 267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~ 333 (751)
+ .+|.. .|++++|+|+|++|++++.|+.|++||... ........+...+..++|+|+.
T Consensus 381 ~-------~~~~~-~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-~~~~~~~~~~~~v~~~~~s~d~ 438 (577)
T 2ymu_A 381 L-------TGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDD 438 (577)
T ss_dssp E-------ECCSS-CEEEEEECTTSSCEEEEETTSEEEEECTTC-CEEEEEECCSSCEEEEEECTTS
T ss_pred e-------cCCCC-CeEEEEECCCCCEEEEEeCCCEEEEEeCCC-CEEEEecCCCCCeEEEEECCCC
Confidence 1 22333 599999999999999999999999999654 4344444455556666666643
No 20
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.5e-35 Score=318.58 Aligned_cols=250 Identities=12% Similarity=0.177 Sum_probs=191.5
Q ss_pred CCCchHHHHHhhhccCcCcc--cccccc-cchhhhccccccEEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCC
Q 004468 6 FHDGSIYDMLDTRHTDTRPD--VNHSLQ-MHSSLVRRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSS 81 (751)
Q Consensus 6 ~~~~~~~~~l~~r~~~~~~~--~~~~l~-~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg-~~LaSgs~Dg~I~IWd~~~ 81 (751)
-...++..++..+.+..... +...++ ........+++.+.+.+|.+.|++++|+|+| ++||+|+.|+.|+|||+.+
T Consensus 26 ~~~~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 105 (383)
T 3ei3_B 26 VGQTSILHYIYKSSLGQSIHAQLRQCLQEPFIRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDV 105 (383)
T ss_dssp -CCCSHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTS
T ss_pred cCCcceEEEeecchhccccccchhhhhhccccccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCC
Confidence 34566777777777765431 111111 1122345677888999999999999999999 9999999999999999998
Q ss_pred CeEEEEec-ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceee---cccCCceeEEEEec
Q 004468 82 RKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY---QCHTRRVKKLAVEV 157 (751)
Q Consensus 82 ~~~~~~l~-~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~---~~h~~~V~~l~~sp 157 (751)
++....+. .+|...|.+++|+|+. +.+|++++.|+.|++||+... .+..+ ..|...|.+++|+|
T Consensus 106 ~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~-----------~~~~~~~~~~~~~~v~~~~~~~ 173 (383)
T 3ei3_B 106 QNKTSFIQGMGPGDAITGMKFNQFN-TNQLFVSSIRGATTLRDFSGS-----------VIQVFAKTDSWDYWYCCVDVSV 173 (383)
T ss_dssp TTCEEEECCCSTTCBEEEEEEETTE-EEEEEEEETTTEEEEEETTSC-----------EEEEEECCCCSSCCEEEEEEET
T ss_pred cccceeeecCCcCCceeEEEeCCCC-CCEEEEEeCCCEEEEEECCCC-----------ceEEEeccCCCCCCeEEEEECC
Confidence 87776663 3799999999999942 689999999999999999842 23444 34558899999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC
Q 004468 158 GNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD 237 (751)
Q Consensus 158 ~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D 237 (751)
++.+|++++.||+|++||++... + .....|...|.+++|+|++..+|++|+.|
T Consensus 174 -~~~~l~~~~~d~~i~i~d~~~~~---------------~-----------~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 226 (383)
T 3ei3_B 174 -SRQMLATGDSTGRLLLLGLDGHE---------------I-----------FKEKLHKAKVTHAEFNPRCDWLMATSSVD 226 (383)
T ss_dssp -TTTEEEEEETTSEEEEEETTSCE---------------E-----------EEEECSSSCEEEEEECSSCTTEEEEEETT
T ss_pred -CCCEEEEECCCCCEEEEECCCCE---------------E-----------EEeccCCCcEEEEEECCCCCCEEEEEeCC
Confidence 67899999999999999984221 1 11123667899999999654499999999
Q ss_pred CeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCC
Q 004468 238 AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 238 ~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fsp-dg~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
+.|++||+++.+... .++..+ +|.. .|++++|+| +|++|++++.|+.|+|||+.++.
T Consensus 227 ~~i~iwd~~~~~~~~---------~~~~~~--------~~~~-~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 227 ATVKLWDLRNIKDKN---------SYIAEM--------PHEK-PVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS 284 (383)
T ss_dssp SEEEEEEGGGCCSTT---------CEEEEE--------ECSS-CEEEEEECTTTSCEEEEEESSSEEEEEETTBTT
T ss_pred CEEEEEeCCCCCccc---------ceEEEe--------cCCC-ceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc
Confidence 999999998754211 111111 1323 599999999 99999999999999999998853
No 21
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=8.9e-35 Score=323.33 Aligned_cols=220 Identities=13% Similarity=0.168 Sum_probs=174.0
Q ss_pred cccccEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEe-cccCCcceEEEEEecCCCCcEEEEEECC
Q 004468 39 RLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGAGD 116 (751)
Q Consensus 39 ~~~~~~~L~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~~~~l-~~~h~~~V~~v~fsp~s~~~~l~sgs~D 116 (751)
..+....+.+|...|+||+|+| ++++||+|+.||+|+|||+.++.....+ ..+|.+.|++|+|+|.. +.+|+||+.|
T Consensus 108 ~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~-~~~l~s~s~D 186 (435)
T 4e54_B 108 SYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLN-TNQFYASSME 186 (435)
T ss_dssp TTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSC-TTEEEEECSS
T ss_pred ceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCC-CCEEEEEeCC
Confidence 4455677889999999999999 5779999999999999999876543322 26899999999999953 7899999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004468 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (751)
Q Consensus 117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~ 196 (751)
++|+|||+..... ........+...+.+++|+| ++.+|++|+.||+|++||++...
T Consensus 187 ~~v~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~--------------- 242 (435)
T 4e54_B 187 GTTRLQDFKGNIL--------RVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGKE--------------- 242 (435)
T ss_dssp SCEEEEETTSCEE--------EEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSSCB---------------
T ss_pred CEEEEeeccCCce--------eEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCcce---------------
Confidence 9999999975310 11222233455688999999 67899999999999999987542
Q ss_pred EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004468 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (751)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (751)
+.....|...|++++|+|++..+|++|+.|+.|+|||+++.+....+. ...+
T Consensus 243 -----------~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~-----------------~~~~ 294 (435)
T 4e54_B 243 -----------LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL-----------------YSLP 294 (435)
T ss_dssp -----------CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCS-----------------BCCB
T ss_pred -----------eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEE-----------------Eeee
Confidence 122234678899999999877799999999999999998765432210 1123
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 277 ~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
|.. .|++++|+|+|++|++++.|+.|+|||+.++.
T Consensus 295 h~~-~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 295 HRH-PVNAACFSPDGARLLTTDQKSEIRVYSASQWD 329 (435)
T ss_dssp CSS-CEEECCBCTTSSEEEEEESSSCEEEEESSSSS
T ss_pred ccc-cccceeECCCCCeeEEEcCCCEEEEEECCCCc
Confidence 444 69999999999999999999999999998853
No 22
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.7e-34 Score=337.73 Aligned_cols=215 Identities=19% Similarity=0.255 Sum_probs=177.6
Q ss_pred ccccEEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCC-----eEEEEecccCCcceEEEEEecCCCCcEEEEE
Q 004468 40 LSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSR-----KLLHSIETGHSANVFCTKFVPETSDELVVSG 113 (751)
Q Consensus 40 ~~~~~~L~gH~~~V~~l~~s~dg-~~LaSgs~Dg~I~IWd~~~~-----~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sg 113 (751)
+++...|++|++.|++|+|+|++ ++|+|||.|++|+||++.+. .....+ .+|...|.+++|+|+ +++|+||
T Consensus 372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~--g~~l~sg 448 (694)
T 3dm0_A 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL-TGHSHFVEDVVLSSD--GQFALSG 448 (694)
T ss_dssp SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEE-ECCSSCEEEEEECTT--SSEEEEE
T ss_pred cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccccccee-cCCCCcEEEEEECCC--CCEEEEE
Confidence 45567899999999999999864 79999999999999998753 344556 799999999999999 8999999
Q ss_pred ECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCcc
Q 004468 114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (751)
Q Consensus 114 s~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~ 193 (751)
+.|++|+|||+.++ ..+..+.+|...|.+++|+| ++.+|+||+.|++|++||+.....
T Consensus 449 s~Dg~v~vwd~~~~----------~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~----------- 506 (694)
T 3dm0_A 449 SWDGELRLWDLAAG----------VSTRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECK----------- 506 (694)
T ss_dssp ETTSEEEEEETTTT----------EEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEE-----------
T ss_pred eCCCcEEEEECCCC----------cceeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcc-----------
Confidence 99999999999864 45778899999999999999 668899999999999999764321
Q ss_pred ceEEEecccCceecccCCCCCccceEEEEEeCCC-CcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccc
Q 004468 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 272 (751)
Q Consensus 194 ~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (751)
..+ ......|...|.+++|+|+. ..+|++|+.|+.|++||+++.+....+
T Consensus 507 -~~~----------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~------------------ 557 (694)
T 3dm0_A 507 -YTI----------SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL------------------ 557 (694)
T ss_dssp -EEE----------CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEE------------------
T ss_pred -eee----------ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEE------------------
Confidence 000 11123477789999999963 258999999999999999875432221
Q ss_pred ccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468 273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 273 ~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
.+|.. .|++++|+|+|++|++++.|+.|+|||+.++
T Consensus 558 --~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~ 593 (694)
T 3dm0_A 558 --AGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLAEG 593 (694)
T ss_dssp --CCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETTTT
T ss_pred --cCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 34544 5999999999999999999999999998873
No 23
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.6e-34 Score=315.94 Aligned_cols=222 Identities=20% Similarity=0.325 Sum_probs=190.5
Q ss_pred ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004468 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~ 106 (751)
+..+++|+. .+.++.++|++|.+.|++++|+|+|++||+|+.|++|+|||+.+++++..+ .+|...|.+++|+|+
T Consensus 129 Dg~i~vwd~--~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~-~~h~~~V~~v~~~p~-- 203 (410)
T 1vyh_C 129 DATIKVWDY--ETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM-HGHDHNVSSVSIMPN-- 203 (410)
T ss_dssp SSCEEEEET--TTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECC-CCCSSCEEEEEECSS--
T ss_pred CCeEEEEEC--CCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE-cCCCCCEEEEEEeCC--
Confidence 567777763 455678899999999999999999999999999999999999999999888 899999999999999
Q ss_pred CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004468 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (751)
Q Consensus 107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~ 186 (751)
+.+|++|+.|++|++||+.++ .++..+.+|...|.+++|+| ++.+|++|+.||+|++||++++...
T Consensus 204 ~~~l~s~s~D~~i~~wd~~~~----------~~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~--- 269 (410)
T 1vyh_C 204 GDHIVSASRDKTIKMWEVQTG----------YCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECK--- 269 (410)
T ss_dssp SSEEEEEETTSEEEEEETTTC----------CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEE---
T ss_pred CCEEEEEeCCCeEEEEECCCC----------cEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcee---
Confidence 799999999999999999864 55788999999999999999 6789999999999999999876521
Q ss_pred CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC-------------------CcEEEEEeCCCeEEEEeCCC
Q 004468 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-------------------PHLLLVGGSDAFARLYDRRM 247 (751)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-------------------~~~l~sgs~D~~IriwD~~~ 247 (751)
.....|...|.+++|+|+. +.+|++|+.|+.|++||+++
T Consensus 270 ----------------------~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~ 327 (410)
T 1vyh_C 270 ----------------------AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 327 (410)
T ss_dssp ----------------------EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred ----------------------eEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence 1112366789999999852 56899999999999999987
Q ss_pred CCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
+..+.. + .+|.. .|++++|+|+|++|++++.|+.|++||+.+
T Consensus 328 ~~~~~~-------------~-------~~h~~-~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~ 369 (410)
T 1vyh_C 328 GMCLMT-------------L-------VGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKN 369 (410)
T ss_dssp TEEEEE-------------E-------ECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTT
T ss_pred CceEEE-------------E-------ECCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 653322 2 23444 699999999999999999999999999765
No 24
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.9e-34 Score=303.48 Aligned_cols=225 Identities=20% Similarity=0.320 Sum_probs=194.6
Q ss_pred ccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecC
Q 004468 25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (751)
Q Consensus 25 ~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~ 104 (751)
..+..+++|+....+..+...|.||...|.+++|++++.+|+||+.|++|+|||+.+++.+..+ ..|...+.+++|+|+
T Consensus 55 s~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~-~~~~~~~~~~~~spd 133 (321)
T 3ow8_A 55 SLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSI-DAGPVDAWTLAFSPD 133 (321)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCTTCCCCEEECTT
T ss_pred cCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEE-eCCCccEEEEEECCC
Confidence 3577888888766666777889999999999999999999999999999999999999999888 788999999999999
Q ss_pred CCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 004468 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 184 (751)
Q Consensus 105 s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~ 184 (751)
+++|++|+.|+.|++||+... +....+..|...|.+++|+| ++.+|++|+.||+|++||+++++..
T Consensus 134 --g~~l~~g~~dg~v~i~~~~~~----------~~~~~~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~- 199 (321)
T 3ow8_A 134 --SQYLATGTHVGKVNIFGVESG----------KKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLL- 199 (321)
T ss_dssp --SSEEEEECTTSEEEEEETTTC----------SEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEE-
T ss_pred --CCEEEEEcCCCcEEEEEcCCC----------ceeEEecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEE-
Confidence 899999999999999999864 44677888999999999999 6789999999999999999876521
Q ss_pred CCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004468 185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (751)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~ 264 (751)
.....|...|++++|+| ++.+|++|+.|+.|++||++..+....+
T Consensus 200 ------------------------~~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~~~~~---------- 244 (321)
T 3ow8_A 200 ------------------------HTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTL---------- 244 (321)
T ss_dssp ------------------------EEECCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCCEEEEE----------
T ss_pred ------------------------EEEcccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcceeEEE----------
Confidence 11223667899999999 4789999999999999999876533221
Q ss_pred ccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 265 ~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
.+|.. .|++++|+|+|++|++++.|+.|+|||+.+
T Consensus 245 ----------~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~ 279 (321)
T 3ow8_A 245 ----------SGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGT 279 (321)
T ss_dssp ----------CCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ----------cCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Confidence 33444 599999999999999999999999999876
No 25
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-35 Score=321.09 Aligned_cols=241 Identities=15% Similarity=0.252 Sum_probs=180.4
Q ss_pred CCcEEEEEECCCCC-EEEEE----------eCCCcEEEEeCCCCe---EEEEecccCCcceEEEEEecCCCCcEEEEEEC
Q 004468 50 QGCVNAISWNSKGS-LLISG----------SDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (751)
Q Consensus 50 ~~~V~~l~~s~dg~-~LaSg----------s~Dg~I~IWd~~~~~---~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~ 115 (751)
...|.+++|+|+|+ +||+| +.|+.|+|||+.++. .+.. ..|...|.+++|+|+ +.+|++|+.
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~--~~~~~~v~~~~~s~~--~~~l~~~~~ 87 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS--LQVDSKFNDLDWSHN--NKIIAGALD 87 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC--CCCSSCEEEEEECSS--SSCEEEEES
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE--EecCCceEEEEECCC--CCeEEEEcc
Confidence 35788999999997 99999 899999999998775 3333 368999999999999 799999999
Q ss_pred CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccce
Q 004468 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (751)
Q Consensus 116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~ 195 (751)
|+.|++||+...... ...+..+.+|...|.+++|+|+++.+|++++.||+|++||+++........
T Consensus 88 dg~v~vw~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-------- 153 (416)
T 2pm9_A 88 NGSLELYSTNEANNA------INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY-------- 153 (416)
T ss_dssp SSCEEEECCSSTTSC------CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC--------
T ss_pred CCeEEEeeccccccc------ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc--------
Confidence 999999999862111 135778889999999999999658899999999999999999875210000
Q ss_pred EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccC
Q 004468 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (751)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (751)
....+.....|...|.+++|+|+++.+|++++.|+.|++||+++.+.+..+.. +....
T Consensus 154 --------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--------------~~~~~ 211 (416)
T 2pm9_A 154 --------TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSY--------------TSPNS 211 (416)
T ss_dssp --------CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECC--------------CCCSS
T ss_pred --------cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEec--------------ccccc
Confidence 00001122346778999999997679999999999999999988654332211 00001
Q ss_pred CccccceEEEEEcCCC-CEEEEEeCCC---cEEEEECCCCCcceeee--ecCCCceeEEeCC
Q 004468 276 GRSSLHLTHVTFSPNG-EEVLLSYSGE---HVYLMDVNHAGGRAMRY--TVGDASKIMSFTP 331 (751)
Q Consensus 276 g~~~~~vt~v~fspdg-~~Ll~~s~d~---~I~lwdl~~~~~~~~~~--~~~~~~~~~~~sp 331 (751)
+|. ..|++++|+|++ .+|++++.|+ .|++||+.++......+ .+...+..++|+|
T Consensus 212 ~~~-~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~ 272 (416)
T 2pm9_A 212 GIK-QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCH 272 (416)
T ss_dssp CCC-CCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECS
T ss_pred ccC-CceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCC
Confidence 122 269999999998 5888999998 99999999864332222 3445555566655
No 26
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-33 Score=300.17 Aligned_cols=225 Identities=17% Similarity=0.270 Sum_probs=179.8
Q ss_pred ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004468 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (751)
Q Consensus 38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg 117 (751)
........|.+|.+.|++++|+|+|++||+|+.||.|+|||+.+++.+..+ .+|...|.+++|+|+ +++|++++.|+
T Consensus 20 G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~s~~~dg 96 (369)
T 3zwl_B 20 GSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL-DGHTGTIWSIDVDCF--TKYCVTGSADY 96 (369)
T ss_dssp CCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTT
T ss_pred ccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhh-hhcCCcEEEEEEcCC--CCEEEEEeCCC
Confidence 344455779999999999999999999999999999999999999999988 899999999999998 79999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC-----CcEEEEecCCCCCCCCCCCCCCc
Q 004468 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGSSCPPAGSSHQE 192 (751)
Q Consensus 118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D-----g~I~iwDlr~~~~~~~~~~~~~~ 192 (751)
.|++||+..+ +.+..+. |...|.+++|+| ++.+|++++.+ |.|++||++..........
T Consensus 97 ~i~iwd~~~~----------~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~---- 160 (369)
T 3zwl_B 97 SIKLWDVSNG----------QCVATWK-SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTK---- 160 (369)
T ss_dssp EEEEEETTTC----------CEEEEEE-CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEE----
T ss_pred eEEEEECCCC----------cEEEEee-cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecc----
Confidence 9999999864 4455665 899999999999 67899999998 9999999988764321110
Q ss_pred cceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC-CCCccccCCCCCCCCccccccccc
Q 004468 193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMH 271 (751)
Q Consensus 193 ~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 271 (751)
........+. .......+.+++|+| ++.+|++++.|+.|++||+++ ...+.. +
T Consensus 161 -------~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------------~---- 214 (369)
T 3zwl_B 161 -------VSEEPIHKII-THEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDS-------------I---- 214 (369)
T ss_dssp -------ECSSCSEEEE-CCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEE-------------E----
T ss_pred -------cccceeeecc-CCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEE-------------E----
Confidence 0000000010 111223899999999 578999999999999999987 322211 1
Q ss_pred cccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468 272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 272 ~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
.+|.. .|++++|+|++++|++++.|+.|++||+.++
T Consensus 215 ---~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 215 ---DLHEK-SISDMQFSPDLTYFITSSRDTNSFLVDVSTL 250 (369)
T ss_dssp ---ECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred ---ecCCC-ceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence 12323 5999999999999999999999999998873
No 27
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.8e-34 Score=359.49 Aligned_cols=209 Identities=21% Similarity=0.331 Sum_probs=167.1
Q ss_pred ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004468 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~ 106 (751)
+..+++|+. .+.+.+.++.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++.+..+ .+|...|.+++|+|+.+
T Consensus 636 d~~i~vw~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~ 712 (1249)
T 3sfz_A 636 DKTLQVFKA--ETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSN 712 (1249)
T ss_dssp TSCEEEEET--TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSS
T ss_pred CCeEEEEEC--CCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEE-cCCCCcEEEEEEecCCC
Confidence 456666653 455678899999999999999999999999999999999999999999998 79999999999999754
Q ss_pred CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004468 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (751)
Q Consensus 107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~ 186 (751)
+.++++|+.|+.|++||+.++ .++..+.+|...|++++|+| ++.+|++++.||+|++||++++......
T Consensus 713 ~~~l~sg~~d~~v~vwd~~~~----------~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 781 (1249)
T 3sfz_A 713 HLLLATGSNDFFLKLWDLNQK----------ECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSI 781 (1249)
T ss_dssp CCEEEEEETTSCEEEEETTSS----------SEEEEECCCSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEEEEE
T ss_pred ceEEEEEeCCCeEEEEECCCc----------chhheecCCCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCccccee
Confidence 779999999999999999864 55788899999999999999 6789999999999999999876421000
Q ss_pred ------------------------CCCC-------CccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe
Q 004468 187 ------------------------GSSH-------QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG 235 (751)
Q Consensus 187 ------------------------~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs 235 (751)
.... ......+|+...+..... ....+...|.+++|+| ++.++++++
T Consensus 782 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~-~~~~~~~~v~~~~~sp-~~~~l~~~~ 859 (1249)
T 3sfz_A 782 NVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE-IHTGHHSTIQYCDFSP-YDHLAVIAL 859 (1249)
T ss_dssp ECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEE-EECSSSSCCCEEEECS-STTEEEEEC
T ss_pred cccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeE-EcCCCCCceEEEEEcC-CCCEEEEEe
Confidence 0000 011233455544433211 1235678899999999 479999999
Q ss_pred CCCeEEEEeCCCCCCc
Q 004468 236 SDAFARLYDRRMLPPL 251 (751)
Q Consensus 236 ~D~~IriwD~~~~~~~ 251 (751)
.|+.|++||+.+...+
T Consensus 860 ~dg~v~vwd~~~~~~~ 875 (1249)
T 3sfz_A 860 SQYCVELWNIDSRLKV 875 (1249)
T ss_dssp SSSCEEEEETTTTEEE
T ss_pred CCCeEEEEEcCCCcee
Confidence 9999999999876543
No 28
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=302.51 Aligned_cols=208 Identities=17% Similarity=0.214 Sum_probs=171.1
Q ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe---cccCCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004468 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI---ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (751)
Q Consensus 46 L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l---~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw 122 (751)
...|...|++++|+|++ .|++|+.||+|+|||+.+++.+..+ ..+|.+.|++|+|+|+ +++|++|+.|++|+||
T Consensus 78 ~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd--g~~l~sgs~d~~i~iw 154 (344)
T 4gqb_B 78 GVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS--GTQAVSGSKDICIKVW 154 (344)
T ss_dssp EEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT--SSEEEEEETTSCEEEE
T ss_pred eeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC--CCEEEEEeCCCeEEEE
Confidence 34467889999999985 6889999999999999988654332 2589999999999999 8999999999999999
Q ss_pred ECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004468 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (751)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~ 202 (751)
|+.++ +++..+.+|...|++++|+|++..+|++|+.||+|++||+++++....
T Consensus 155 d~~~~----------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~----------------- 207 (344)
T 4gqb_B 155 DLAQQ----------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ----------------- 207 (344)
T ss_dssp ETTTT----------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE-----------------
T ss_pred ECCCC----------cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeee-----------------
Confidence 99864 568899999999999999997778999999999999999998763210
Q ss_pred CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccce
Q 004468 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (751)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v 282 (751)
.....+...+.+++|+|.++++|++|+.|+.|+|||+++.+.+..+ .+|.. .|
T Consensus 208 ------~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~--------------------~~h~~-~v 260 (344)
T 4gqb_B 208 ------IGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS--------------------AVHSQ-CV 260 (344)
T ss_dssp ------CC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE--------------------ECCSS-CE
T ss_pred ------eecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE--------------------cCCCC-CE
Confidence 0111244568999999988899999999999999999987654332 34444 59
Q ss_pred EEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 004468 283 THVTFSPNG-EEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 283 t~v~fspdg-~~Ll~~s~d~~I~lwdl~~ 310 (751)
++++|+|+| ++|++++.|++|+|||+.+
T Consensus 261 ~~v~fsp~g~~~lasgs~D~~i~vwd~~~ 289 (344)
T 4gqb_B 261 TGLVFSPHSVPFLASLSEDCSLAVLDSSL 289 (344)
T ss_dssp EEEEECSSSSCCEEEEETTSCEEEECTTC
T ss_pred EEEEEccCCCeEEEEEeCCCeEEEEECCC
Confidence 999999998 5788999999999999766
No 29
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.8e-33 Score=353.22 Aligned_cols=260 Identities=18% Similarity=0.208 Sum_probs=207.4
Q ss_pred ccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEE
Q 004468 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (751)
Q Consensus 42 ~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~v 121 (751)
....+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++.+..+ .+|.+.|.+++|+|+ +++|++|+.|++|+|
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~-~~h~~~v~~~~~s~~--~~~l~s~~~d~~v~v 683 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSD--DSYIATCSADKKVKI 683 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSEEEE
T ss_pred ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEe-ccCCCCEEEEEEecC--CCEEEEEeCCCeEEE
Confidence 44578899999999999999999999999999999999999999999 799999999999999 899999999999999
Q ss_pred EECCCCCCCCCCCCCCCCceeecccCCceeEEEEecC-CCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEec
Q 004468 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (751)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (751)
||+.++ +++..+.+|...|.+++|+|+ +..++++|+.||+|++||+++++..
T Consensus 684 wd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~----------------- 736 (1249)
T 3sfz_A 684 WDSATG----------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR----------------- 736 (1249)
T ss_dssp EETTTC----------CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEE-----------------
T ss_pred EECCCC----------ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchh-----------------
Confidence 999865 568889999999999999985 3458999999999999999886521
Q ss_pred ccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCC-------------CCCccccc
Q 004468 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS-------------PPPCVNYF 267 (751)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~-------------~~~~~~~~ 267 (751)
....+|...|++++|+| ++.++++++.|+.|++||+++......+..... ...++. +
T Consensus 737 --------~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~ 806 (1249)
T 3sfz_A 737 --------NTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS-W 806 (1249)
T ss_dssp --------EEECCCSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCC-B
T ss_pred --------heecCCCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEE-E
Confidence 11224678899999999 578999999999999999987653322211000 000000 0
Q ss_pred ccc-----------------------ccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCc
Q 004468 268 CPM-----------------------HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDAS 324 (751)
Q Consensus 268 ~~~-----------------------~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~ 324 (751)
.+. .....+|.. .|++++|+|+++++++++.|+.|++||+.++........+...+
T Consensus 807 s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v 885 (1249)
T 3sfz_A 807 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHS-TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWV 885 (1249)
T ss_dssp CTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSS-CCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCC-ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccce
Confidence 000 000013333 69999999999999999999999999999976666666777888
Q ss_pred eeEEeCCCCCCcccCCCc
Q 004468 325 KIMSFTPTLNGLELQPPI 342 (751)
Q Consensus 325 ~~~~~sp~~~~~~~~~~~ 342 (751)
..++|+|+...+.....+
T Consensus 886 ~~v~~spdg~~l~s~s~d 903 (1249)
T 3sfz_A 886 HGVMFSPDGSSFLTASDD 903 (1249)
T ss_dssp EEEEECTTSSEEEEEETT
T ss_pred EEEEECCCCCEEEEEeCC
Confidence 999999987766554433
No 30
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-33 Score=309.27 Aligned_cols=237 Identities=11% Similarity=0.161 Sum_probs=172.9
Q ss_pred ccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeC----CCCe------EEEEecc---------cCCcceEEEEEecCCC
Q 004468 47 EGHQGCVNAISWNSKGS-LLISGSDDTHINVWSY----SSRK------LLHSIET---------GHSANVFCTKFVPETS 106 (751)
Q Consensus 47 ~gH~~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~----~~~~------~~~~l~~---------~h~~~V~~v~fsp~s~ 106 (751)
..|.+.|++++|+|+|+ +||+|+.|+.|+||++ .+++ ....+.. +|.+.|.+++|+|+
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-- 119 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD-- 119 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT--
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC--
Confidence 44669999999999999 9999999999999999 8877 3444411 26889999999998
Q ss_pred CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004468 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (751)
Q Consensus 107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~ 186 (751)
+++|++|+.|+.|++||... ..+..+..|...|.+++|+| ++.+|++++.||.|++||+++++....
T Consensus 120 ~~~l~~~~~dg~i~i~~~~~-----------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~- 186 (425)
T 1r5m_A 120 GNSIVTGVENGELRLWNKTG-----------ALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQH- 186 (425)
T ss_dssp SSEEEEEETTSCEEEEETTS-----------CEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEEE-
T ss_pred CCEEEEEeCCCeEEEEeCCC-----------CeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEE-
Confidence 89999999999999999432 45788889999999999999 678999999999999999987653210
Q ss_pred CCCCCccceEEEecccCce--ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004468 187 GSSHQECRNILLDLRCGAK--RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (751)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~ 264 (751)
+....... ............+.+++|+|+ ..+++++.|+.|++||+++.+.+..+
T Consensus 187 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~i~~~d~~~~~~~~~~---------- 243 (425)
T 1r5m_A 187 -----------FELKETGGSSINAENHSGDGSLGVDVEWVDD--DKFVIPGPKGAIFVYQITEKTPTGKL---------- 243 (425)
T ss_dssp -----------ECCC---------------CCCBSCCEEEET--TEEEEECGGGCEEEEETTCSSCSEEE----------
T ss_pred -----------eeccccCccceeeccccCCcceeeEEEEcCC--CEEEEEcCCCeEEEEEcCCCceeeee----------
Confidence 00000000 000000111223888999984 57999999999999999876543222
Q ss_pred ccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCC
Q 004468 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (751)
Q Consensus 265 ~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~ 332 (751)
.+|.. .|++++|+|++++|++++.|+.|++||+.++........+...+..++|+|+
T Consensus 244 ----------~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 300 (425)
T 1r5m_A 244 ----------IGHHG-PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGD 300 (425)
T ss_dssp ----------CCCSS-CEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETT
T ss_pred ----------ccCCC-ceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCC
Confidence 12333 5999999999999999999999999999986544444444555555555553
No 31
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.6e-33 Score=301.71 Aligned_cols=231 Identities=12% Similarity=0.175 Sum_probs=171.7
Q ss_pred EeccCCCcEEEEEECCC----CCEEEEEeCCCcEEEEeCCCCeEEEEec----ccCCcceEEEEEecCCC--CcEEEEEE
Q 004468 45 ELEGHQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKLLHSIE----TGHSANVFCTKFVPETS--DELVVSGA 114 (751)
Q Consensus 45 ~L~gH~~~V~~l~~s~d----g~~LaSgs~Dg~I~IWd~~~~~~~~~l~----~~h~~~V~~v~fsp~s~--~~~l~sgs 114 (751)
.+.+|.+.|++++|+|+ ..++++++.++.|+|||+.+++.+..+. ..|...|.+++|+|+.. +.+|++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 44599999999999984 4456666667799999999877665552 13668899999999843 46999999
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004468 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (751)
Q Consensus 115 ~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~ 194 (751)
.|+.|++||+.+. +++..+.+|...|.+++|+|+++.+|++++.||+|++||+++++..
T Consensus 93 ~dg~i~v~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----------- 151 (366)
T 3k26_A 93 SRGIIRIINPITM----------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV----------- 151 (366)
T ss_dssp TTCEEEEECTTTC----------CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEE-----------
T ss_pred CCCEEEEEEchhc----------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEE-----------
Confidence 9999999999864 5578888999999999999977789999999999999999876521
Q ss_pred eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCC--------CCCCCcccc
Q 004468 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR--------MSPPPCVNY 266 (751)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~--------~~~~~~~~~ 266 (751)
. .+.....+...|.+++|+| ++.+|++++.|+.|++||+++.+....+... ..+......
T Consensus 152 ---~--------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (366)
T 3k26_A 152 ---A--------IFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI 219 (366)
T ss_dssp ---E--------EECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred ---E--------EecccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence 0 1111234678899999999 5789999999999999999876533222110 000000000
Q ss_pred ccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
..+......+|.. .|++++|+ +++|++++.|+.|++||+.+.
T Consensus 220 ~~~~~~~~~~~~~-~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~ 261 (366)
T 3k26_A 220 HFPDFSTRDIHRN-YVDCVRWL--GDLILSKSCENAIVCWKPGKM 261 (366)
T ss_dssp CCCSEEECSSCSS-CCCEEEEE--TTEEEEECSSSEEEEEEESST
T ss_pred ccCccccccCCcc-eEEEEEEc--CCEEEEEecCCEEEEEeCCCc
Confidence 0000011122433 69999999 789999999999999998773
No 32
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.3e-32 Score=295.44 Aligned_cols=223 Identities=18% Similarity=0.316 Sum_probs=184.6
Q ss_pred cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC----eEEEEecccCCcceEEEEE
Q 004468 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKF 101 (751)
Q Consensus 26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~----~~~~~l~~~h~~~V~~v~f 101 (751)
.+..+++|+. .+.+....+..|...|.+++|+|+|++||+|+.|+.|+||++.++ .....+ .+|.+.|.++.|
T Consensus 75 ~Dg~v~iWd~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~-~~h~~~v~~~~~ 151 (340)
T 1got_B 75 QDGKLIIWDS--YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSREL-AGHTGYLSCCRF 151 (340)
T ss_dssp TTTEEEEEET--TTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEE-ECCSSCEEEEEE
T ss_pred CCCcEEEEEC--CCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEe-cCCCccEEEEEE
Confidence 3567777763 345677889999999999999999999999999999999999765 344455 799999999999
Q ss_pred ecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCC
Q 004468 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (751)
Q Consensus 102 sp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~ 181 (751)
+|+ ..|++++.|++|++||+.++ +++..+.+|...|.+++|+| ++.+|++|+.||+|++||++++.
T Consensus 152 ~~~---~~l~s~s~d~~i~~wd~~~~----------~~~~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~ 217 (340)
T 1got_B 152 LDD---NQIVTSSGDTTCALWDIETG----------QQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGM 217 (340)
T ss_dssp EET---TEEEEEETTSCEEEEETTTT----------EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCS
T ss_pred CCC---CcEEEEECCCcEEEEECCCC----------cEEEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCe
Confidence 988 35999999999999999864 55788899999999999999 67899999999999999998865
Q ss_pred CCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCC
Q 004468 182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 261 (751)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~ 261 (751)
.. .....|...|++++|+| ++.+|++|+.|+.|++||+++.+.+..+.
T Consensus 218 ~~-------------------------~~~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~------ 265 (340)
T 1got_B 218 CR-------------------------QTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYS------ 265 (340)
T ss_dssp EE-------------------------EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC------
T ss_pred eE-------------------------EEEcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEc------
Confidence 21 11223677899999999 47999999999999999998764332211
Q ss_pred CccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
+ ..+ ...|++++|+|+|++|++++.|+.|++||+.+
T Consensus 266 ---------~---~~~-~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~ 301 (340)
T 1got_B 266 ---------H---DNI-ICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301 (340)
T ss_dssp ---------C---TTC-CSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred ---------c---CCc-ccceEEEEECCCCCEEEEECCCCeEEEEEccc
Confidence 0 011 12599999999999999999999999999766
No 33
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.5e-33 Score=298.98 Aligned_cols=216 Identities=13% Similarity=0.147 Sum_probs=168.1
Q ss_pred ccEEeccCCCcEEEEEECCCCCE-EEEEeC---CCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC-CCcEEEEEECC
Q 004468 42 QERELEGHQGCVNAISWNSKGSL-LISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET-SDELVVSGAGD 116 (751)
Q Consensus 42 ~~~~L~gH~~~V~~l~~s~dg~~-LaSgs~---Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s-~~~~l~sgs~D 116 (751)
..+.+++|.+.|++++|+|++.. +++|+. |+.|+|||+.+++.......+|...|.+++|+|+. ++.+|++|+.|
T Consensus 10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 34567899999999999999964 456665 99999999998887665545899999999999982 14899999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEE------ecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCC
Q 004468 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV------EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH 190 (751)
Q Consensus 117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~------sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~ 190 (751)
+.|++||+.... .++..+.+|...|.+++| +| ++.+|++++.||+|++||++++....
T Consensus 90 g~i~iwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~------ 153 (357)
T 3i2n_A 90 GNLHIWNLEAPE---------MPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPV------ 153 (357)
T ss_dssp SCEEEECTTSCS---------SCSEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCS------
T ss_pred CeEEEEeCCCCC---------ccEEEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcc------
Confidence 999999998642 257888999999999966 56 66899999999999999999875221
Q ss_pred CccceEEEecccCceecccCCCCCccceEEEE----EeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccc
Q 004468 191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCD----ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (751)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~----~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~ 266 (751)
..+.... ......+.+++ |+| ++.+|++++.|+.|++||+++.+....
T Consensus 154 -----~~~~~~~---------~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~------------- 205 (357)
T 3i2n_A 154 -----ANMEPVQ---------GENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWE------------- 205 (357)
T ss_dssp -----EEECCCT---------TSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEE-------------
T ss_pred -----eeccccC---------CCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeee-------------
Confidence 0110000 01234678888 677 579999999999999999987542111
Q ss_pred ccccccccCCccccceEEEEEcC---CCCEEEEEeCCCcEEEEECCC
Q 004468 267 FCPMHLSEHGRSSLHLTHVTFSP---NGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 267 ~~~~~~~~~g~~~~~vt~v~fsp---dg~~Ll~~s~d~~I~lwdl~~ 310 (751)
..|.. .|++++|+| ++.+|++++.|+.|++||+.+
T Consensus 206 --------~~~~~-~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 243 (357)
T 3i2n_A 206 --------TNIKN-GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT 243 (357)
T ss_dssp --------EECSS-CEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred --------cCCCC-ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence 11222 599999999 999999999999999999876
No 34
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=7.2e-33 Score=302.66 Aligned_cols=231 Identities=16% Similarity=0.152 Sum_probs=174.6
Q ss_pred ccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe------EEEEecccCCcceEEEEEecC--CCC---c
Q 004468 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK------LLHSIETGHSANVFCTKFVPE--TSD---E 108 (751)
Q Consensus 40 ~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~------~~~~l~~~h~~~V~~v~fsp~--s~~---~ 108 (751)
+...+.|.+|.+.|++|+|+| ++||+|+.||+|+|||+.++. .+..+ .+|...|.+++|+|+ .++ .
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~g~~~~ 82 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQAIERDAFELC 82 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEEEEETTTEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEE-ecCCCcEEEEEEecccccCCcccc
Confidence 355678899999999999998 899999999999999999877 67777 699999999999997 126 7
Q ss_pred EEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeeccc-----CCceeEEEEe----cCCCCE-EEEEeCCCcEEEEecC
Q 004468 109 LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH-----TRRVKKLAVE----VGNPHV-VWSASEDGTLRQHDFR 178 (751)
Q Consensus 109 ~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h-----~~~V~~l~~s----p~~~~~-l~s~s~Dg~I~iwDlr 178 (751)
+|++++.|+.|++||+....... ...+..+..| ...|.+++|+ | ++.+ |++++.||.|++||++
T Consensus 83 ~l~s~~~dg~i~iw~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~ 156 (397)
T 1sq9_A 83 LVATTSFSGDLLFYRITREDETK-----KVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFH 156 (397)
T ss_dssp EEEEEETTSCEEEEEEEECTTTC-----CEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEE
T ss_pred EEEEEcCCCCEEEEEccCCcccc-----cccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCC
Confidence 99999999999999998642100 0116677788 5999999999 8 5677 9999999999999999
Q ss_pred C------CCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCcc
Q 004468 179 Q------GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT 252 (751)
Q Consensus 179 ~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~ 252 (751)
+ ++..... ....+.. .+.....+...|.+++|+|+ + +|++++.|+.|++||+++.+.+.
T Consensus 157 ~~~~~~~~~~~~~~------~~~~~~~-------~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~ 221 (397)
T 1sq9_A 157 PFADESNSLTLNWS------PTLELQG-------TVESPMTPSQFATSVDISER-G-LIATGFNNGTVQISELSTLRPLY 221 (397)
T ss_dssp SSSSHHHHTTTCCC------CEEEEEE-------EECCSSSSCCCCCEEEECTT-S-EEEEECTTSEEEEEETTTTEEEE
T ss_pred ccccccccceeecc------Ccceeee-------eeccccCCCCCceEEEECCC-c-eEEEEeCCCcEEEEECCCCceeE
Confidence 8 4432100 0001100 01111335678999999995 6 99999999999999998765433
Q ss_pred ccCCCCCCCCccccccccccccCCc--cccceEEEEEcCCCCEEEEEeCC---CcEEEEECCCC
Q 004468 253 SCQKRMSPPPCVNYFCPMHLSEHGR--SSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNHA 311 (751)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~vt~v~fspdg~~Ll~~s~d---~~I~lwdl~~~ 311 (751)
.+.. . .+| ....|++++|+|++++|++++.| +.|++||+.++
T Consensus 222 ~~~~-------------~----~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~ 268 (397)
T 1sq9_A 222 NFES-------------Q----HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG 268 (397)
T ss_dssp EEEC-------------C----C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred EEec-------------c----ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 2210 0 012 02259999999999999999999 99999999874
No 35
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=313.69 Aligned_cols=221 Identities=15% Similarity=0.245 Sum_probs=167.6
Q ss_pred hccccccEEe-ccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCC---CeEEE-EecccCCcceEEEEEecCCCCcEE
Q 004468 37 VRRLSQEREL-EGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSS---RKLLH-SIETGHSANVFCTKFVPETSDELV 110 (751)
Q Consensus 37 i~~~~~~~~L-~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~---~~~~~-~l~~~h~~~V~~v~fsp~s~~~~l 110 (751)
..+.+++.+| ++|.+.|++|+|+| ++++||||+.||+|+|||+.+ +.... .+..+|...|.+++|+|+ +.+|
T Consensus 49 ~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l 126 (437)
T 3gre_A 49 NLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPN--FDAF 126 (437)
T ss_dssp GCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTT--SSEE
T ss_pred cccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCC--CCEE
Confidence 3556778888 99999999999999 999999999999999999876 43211 221269999999999998 7999
Q ss_pred EEEECCCcEEEEECCCC-CCCCCCCCCCCCceeecc------------cCCceeEEE--EecCCCCEEEEEeCCCcEEEE
Q 004468 111 VSGAGDAEVRLFNLSRF-SGRGLDDNAITPSALYQC------------HTRRVKKLA--VEVGNPHVVWSASEDGTLRQH 175 (751)
Q Consensus 111 ~sgs~Dg~V~vwd~~~~-~~~~~~~~~~~~~~~~~~------------h~~~V~~l~--~sp~~~~~l~s~s~Dg~I~iw 175 (751)
++|+.|++|++||+... .+ +.+..+.. +...+.++. +++ ++.+|++++.||+|++|
T Consensus 127 ~s~s~dg~i~vwd~~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iw 197 (437)
T 3gre_A 127 AVSSKDGQIIVLKVNHYQQE--------SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIF 197 (437)
T ss_dssp EEEETTSEEEEEEEEEEEET--------TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEE
T ss_pred EEEeCCCEEEEEEeccccCC--------ceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEE
Confidence 99999999999999521 11 11222221 455666666 445 56899999999999999
Q ss_pred ecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccC
Q 004468 176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ 255 (751)
Q Consensus 176 Dlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~ 255 (751)
|+++++.. ..+ ..+.|...|++++|+|+ +.+|++|+.|+.|++||+++.+.+..+
T Consensus 198 d~~~~~~~-----------~~~------------~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~- 252 (437)
T 3gre_A 198 DIRTLERL-----------QII------------ENSPRHGAVSSICIDEE-CCVLILGTTRGIIDIWDIRFNVLIRSW- 252 (437)
T ss_dssp ETTTCCEE-----------EEE------------ECCGGGCCEEEEEECTT-SCEEEEEETTSCEEEEETTTTEEEEEE-
T ss_pred eCCCCeee-----------EEE------------ccCCCCCceEEEEECCC-CCEEEEEcCCCeEEEEEcCCccEEEEE-
Confidence 99886521 111 11115678999999995 899999999999999999976543221
Q ss_pred CCCCCCCccccccccccccCCccccceEEEEEc----CCCCEEEEEeCCCcEEEEECCCCC
Q 004468 256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS----PNGEEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fs----pdg~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
. .+|.. .|++++|+ |++.+|++++.|+.|+|||+.++.
T Consensus 253 ------------~------~~~~~-~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 294 (437)
T 3gre_A 253 ------------S------FGDHA-PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH 294 (437)
T ss_dssp ------------B------CTTCE-EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTE
T ss_pred ------------e------cCCCC-ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCc
Confidence 1 12222 59999555 568899999999999999998854
No 36
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-34 Score=321.05 Aligned_cols=243 Identities=10% Similarity=0.059 Sum_probs=177.2
Q ss_pred ccEEeccCCCcEEEEEECCCC---------CEEEE-------------------EeCCCcEEEEeCCCCeEE----EEec
Q 004468 42 QERELEGHQGCVNAISWNSKG---------SLLIS-------------------GSDDTHINVWSYSSRKLL----HSIE 89 (751)
Q Consensus 42 ~~~~L~gH~~~V~~l~~s~dg---------~~LaS-------------------gs~Dg~I~IWd~~~~~~~----~~l~ 89 (751)
...++. +.+.|++|+|+|++ ++||+ |+.|++|+|||+.+++.. ..+
T Consensus 126 ~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l- 203 (524)
T 2j04_B 126 RGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTI- 203 (524)
T ss_dssp CEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEE-
T ss_pred ceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEE-
Confidence 334444 67899999999986 56666 557899999998776532 334
Q ss_pred ccCCcceEEEEEecC----CCCcEEEEEECCCcEEEEECCCCCCCCC-CCCCCCCceeecccCCceeEEEEecCCCCEEE
Q 004468 90 TGHSANVFCTKFVPE----TSDELVVSGAGDAEVRLFNLSRFSGRGL-DDNAITPSALYQCHTRRVKKLAVEVGNPHVVW 164 (751)
Q Consensus 90 ~~h~~~V~~v~fsp~----s~~~~l~sgs~Dg~V~vwd~~~~~~~~~-~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~ 164 (751)
.+|.+.|.+|+|+|+ .++.+||+|+.|++|+|||+........ ......+...+.+|...|++++|++ + ..|+
T Consensus 204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~la 281 (524)
T 2j04_B 204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TTVV 281 (524)
T ss_dssp EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SEEE
T ss_pred EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-CeEE
Confidence 578899999999996 1257999999999999999985421100 0000134567889999999999998 3 4899
Q ss_pred EEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEE--EEeCCCC-cEEEEEeCCCeEE
Q 004468 165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC--DISSTRP-HLLLVGGSDAFAR 241 (751)
Q Consensus 165 s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i--~~sp~~~-~~l~sgs~D~~Ir 241 (751)
+|+.||+|++||++++... ......|...|+++ .|+| ++ .+|++|+.|++|+
T Consensus 282 sgs~DgtV~lWD~~~~~~~------------------------~~~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvk 336 (524)
T 2j04_B 282 CGFKNGFVAEFDLTDPEVP------------------------SFYDQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFY 336 (524)
T ss_dssp EEETTSEEEEEETTBCSSC------------------------SEEEECSSSCEEEEEEECCT-TSCCEEEEEETTSEEE
T ss_pred EEeCCCEEEEEECCCCCCc------------------------eEEeecccccEEEEEEEcCC-CCCeEEEEeccCCeEE
Confidence 9999999999999875321 00112367789999 5667 45 8999999999999
Q ss_pred EEeCCCCCCccccCCCCCCCCccccccccccccCCccc-cceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeec
Q 004468 242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS-LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV 320 (751)
Q Consensus 242 iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~ 320 (751)
|||+++.+.... + .+|.. ..|.+++|+|+++.|++++.|++|+|||+.++........+
T Consensus 337 lWD~~~~~~~~~-------------~-------~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH 396 (524)
T 2j04_B 337 IFNPKDIATTKT-------------T-------VSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSR 396 (524)
T ss_dssp EECGGGHHHHCE-------------E-------EEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEEC
T ss_pred EEECCCCCcccc-------------c-------ccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecC
Confidence 999987542211 1 11211 13788999999999999999999999999997665666677
Q ss_pred CCCceeEEeCCCC
Q 004468 321 GDASKIMSFTPTL 333 (751)
Q Consensus 321 ~~~~~~~~~sp~~ 333 (751)
...+..++|+|+.
T Consensus 397 ~~~V~sva~Sp~g 409 (524)
T 2j04_B 397 ETTITAIGVSRLH 409 (524)
T ss_dssp SSCEEEEECCSSC
T ss_pred CCceEEEEeCCCC
Confidence 7788888888854
No 37
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-33 Score=306.70 Aligned_cols=230 Identities=12% Similarity=0.092 Sum_probs=168.5
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC--eEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEE
Q 004468 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (751)
Q Consensus 44 ~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~--~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~v 121 (751)
..++.|.+.|++++|+|+|++||+|+.|+.|+|||+.++ +.+..+ .+|...|.+++|+|+ +++|++|+.|++|+|
T Consensus 5 ~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~s~~--~~~l~s~s~d~~v~v 81 (377)
T 3dwl_C 5 QVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF-SDHDKIVTCVDWAPK--SNRIVTCSQDRNAYV 81 (377)
T ss_dssp EEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB-CCCSSCEEEEEECTT--TCCEEEEETTSSEEE
T ss_pred eeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE-ecCCceEEEEEEeCC--CCEEEEEeCCCeEEE
Confidence 345567889999999999999999999999999999988 666677 799999999999999 799999999999999
Q ss_pred EECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecc
Q 004468 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (751)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~ 201 (751)
||+..... ..+...+.+|...|.+++|+| ++.+|++++.|++|++||+++++... +
T Consensus 82 wd~~~~~~-------~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~--------~-------- 137 (377)
T 3dwl_C 82 YEKRPDGT-------WKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWW--------V-------- 137 (377)
T ss_dssp C------C-------CCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CC--------C--------
T ss_pred EEcCCCCc-------eeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccce--------e--------
Confidence 99986420 135677888999999999999 67889999999999999998875210 0
Q ss_pred cCceecccCCCC-CccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcccc
Q 004468 202 CGAKRSLADPPK-QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (751)
Q Consensus 202 ~~~~~~~~~~~~-~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (751)
+..... |...|++++|+| ++.+|++++.|+.|++||++........... .............. .+|..
T Consensus 138 ------~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~- 206 (377)
T 3dwl_C 138 ------SKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEAS-VWGSRLPFNTVCAE--YPSGG- 206 (377)
T ss_dssp ------CEEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSC-SSCSCCCEEEEEEC--CCCSS-
T ss_pred ------eeEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCcccc-ccccccchhhhhhc--ccCCc-
Confidence 001112 667899999999 5799999999999999999754321110000 00000000000001 13433
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468 281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 281 ~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
.|++++|+|+|++|++++.|+.|+|||+.++
T Consensus 207 ~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 207 WVHAVGFSPSGNALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp SEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred eEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 6999999999999999999999999998873
No 38
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.5e-32 Score=329.45 Aligned_cols=241 Identities=15% Similarity=0.221 Sum_probs=202.6
Q ss_pred cccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCc
Q 004468 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (751)
Q Consensus 39 ~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~ 118 (751)
+++..+.|.+|.+.|++++|+|+|++||+|+.||.|+|||+.+++.+..+ .+|.+.|.+++|+|+ +++|++|+.|+.
T Consensus 2 ~l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~l~~~~~dg~ 78 (814)
T 3mkq_A 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI-QVTETPVRAGKFIAR--KNWIIVGSDDFR 78 (814)
T ss_dssp CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEGG--GTEEEEEETTSE
T ss_pred CcccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEE-ecCCCcEEEEEEeCC--CCEEEEEeCCCe
Confidence 46678899999999999999999999999999999999999999999998 799999999999999 899999999999
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004468 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (751)
Q Consensus 119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (751)
|+|||+.++ +.+..+.+|...|++++|+| ++.+|++++.||+|++||++++..+
T Consensus 79 i~vw~~~~~----------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~--------------- 132 (814)
T 3mkq_A 79 IRVFNYNTG----------EKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWAL--------------- 132 (814)
T ss_dssp EEEEETTTC----------CEEEEEECCSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEE---------------
T ss_pred EEEEECCCC----------cEEEEEecCCCCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceE---------------
Confidence 999999864 55788899999999999999 6688999999999999999875311
Q ss_pred ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcc
Q 004468 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (751)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 278 (751)
......|...|.+++|+|.++.+|++++.|+.|++||++.......+ ..+.
T Consensus 133 ---------~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~--------------------~~~~ 183 (814)
T 3mkq_A 133 ---------EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL--------------------TTGQ 183 (814)
T ss_dssp ---------EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEE--------------------ECCC
T ss_pred ---------EEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEE--------------------ecCC
Confidence 01112356789999999965789999999999999999865533221 1122
Q ss_pred ccceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcc
Q 004468 279 SLHLTHVTFSP--NGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLE 337 (751)
Q Consensus 279 ~~~vt~v~fsp--dg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~ 337 (751)
...++.++|+| ++.+|++++.|+.|++||+.++........+...+..++|+|+...+.
T Consensus 184 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 244 (814)
T 3mkq_A 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244 (814)
T ss_dssp TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 22589999999 999999999999999999998765555555677788899999766443
No 39
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-32 Score=286.83 Aligned_cols=209 Identities=20% Similarity=0.237 Sum_probs=171.8
Q ss_pred ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004468 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (751)
Q Consensus 38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg 117 (751)
...++.++|.+|.+.|++++| +++++||+|+.||.|+|||+.++.....+ ..|...|.+++|+|+ +.+|++|+.|+
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~~~~~dg 81 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVV-YTGQGFLNSVCYDSE--KELLLFGGKDT 81 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEE-EECSSCEEEEEEETT--TTEEEEEETTS
T ss_pred ccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEe-ecCCccEEEEEECCC--CCEEEEecCCC
Confidence 355788999999999999999 99999999999999999999988888887 789999999999999 89999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004468 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (751)
Q Consensus 118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l 197 (751)
.|++|++..... .+++..+.+|...|.+++|. +.+|++++.||+|++|| ... .+
T Consensus 82 ~i~~~~~~~~~~-------~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~--------------~~ 135 (313)
T 3odt_A 82 MINGVPLFATSG-------EDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGS--------------LV 135 (313)
T ss_dssp CEEEEETTCCTT-------SCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTE--------------EE
T ss_pred eEEEEEeeecCC-------CCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCc--------------EE
Confidence 999999986432 24577888999999999994 46899999999999999 221 01
Q ss_pred EecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCc
Q 004468 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (751)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 277 (751)
.....+...+.++.|+|.++.++++++.|+.|++||.... ...+ ...
T Consensus 136 -----------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---------------~~~~-------~~~ 182 (313)
T 3odt_A 136 -----------YNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV---------------IKTF-------SGI 182 (313)
T ss_dssp -----------EEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE---------------EEEE-------CSS
T ss_pred -----------EecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCce---------------EEEE-------ecc
Confidence 1111256789999999866899999999999999994421 1111 111
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 278 ~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
....|++++|+|++. |++++.|+.|++||+.+
T Consensus 183 ~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~ 214 (313)
T 3odt_A 183 HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT 214 (313)
T ss_dssp CSSCEEEEEEEETTE-EEEEETTSEEEEEETTT
T ss_pred CcccEEEEEEcCCCe-EEEccCCCeEEEEECCc
Confidence 222599999999999 99999999999999876
No 40
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.8e-32 Score=296.32 Aligned_cols=224 Identities=15% Similarity=0.162 Sum_probs=174.4
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe--EEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004468 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (751)
Q Consensus 45 ~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~--~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw 122 (751)
.+..|.+.|++++|+|+|++||+|+.|+.|+|||+.+++ .+..+ .+|...|.+++|+|+ +++|++++.|+.|++|
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAPD--SNRIVTCGTDRNAYVW 79 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEETT--TTEEEEEETTSCEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeee-cCCCCcccEEEEeCC--CCEEEEEcCCCeEEEE
Confidence 355699999999999999999999999999999999887 77777 799999999999998 8999999999999999
Q ss_pred ECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004468 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (751)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~ 202 (751)
|+..... .....+..|...|.+++|+| ++.+|++++.||.|++||++..... ....
T Consensus 80 d~~~~~~--------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~-----------~~~~---- 135 (372)
T 1k8k_C 80 TLKGRTW--------KPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDW-----------WVCK---- 135 (372)
T ss_dssp EEETTEE--------EEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTE-----------EEEE----
T ss_pred ECCCCee--------eeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcc-----------eeee----
Confidence 9975321 22344567999999999999 6789999999999999999876521 0000
Q ss_pred CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccC-----CCCCCCCccccccccccccCCc
Q 004468 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ-----KRMSPPPCVNYFCPMHLSEHGR 277 (751)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~ 277 (751)
.....|...|.+++|+| ++.+|++++.|+.|++||++......... .......++..+ .+|
T Consensus 136 ------~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 201 (372)
T 1k8k_C 136 ------HIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES-------SSS 201 (372)
T ss_dssp ------EECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC-------CCC
T ss_pred ------eeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec-------CCC
Confidence 11123567899999999 57899999999999999986432111000 000011112211 133
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 278 ~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
.. .|++++|+|++++|++++.|+.|++||+.+
T Consensus 202 ~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 233 (372)
T 1k8k_C 202 CG-WVHGVCFSANGSRVAWVSHDSTVCLADADK 233 (372)
T ss_dssp SS-CEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred CC-eEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 33 699999999999999999999999999876
No 41
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.3e-32 Score=292.69 Aligned_cols=227 Identities=11% Similarity=0.101 Sum_probs=175.8
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCC
Q 004468 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (751)
Q Consensus 49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~ 128 (751)
|.+.|.+++|+|+|++|+++..++.+.+|........... .+|...|.+++|+|+ +++|++++ |+.|++||+....
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~~~~-dg~i~iw~~~~~~ 83 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINT-LNHGEVVCAVTISNP--TRHVYTGG-KGCVKVWDISHPG 83 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEE-ECCSSCCCEEEECSS--SSEEEEEC-BSEEEEEETTSTT
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCcccccee-ccCCCceEEEEEecC--CcEEEEcC-CCeEEEEECCCCC
Confidence 5678999999999999999988888888876655555444 489999999999999 79999998 9999999998643
Q ss_pred CCCCCCCCCCCceeec--ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCcee
Q 004468 129 GRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (751)
Q Consensus 129 ~~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (751)
.. ..+..+. .|...|.+++|+| ++.+|++++.||.|++||+++++.. ..
T Consensus 84 ~~-------~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~------------~~--------- 134 (337)
T 1gxr_A 84 NK-------SPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPR------------IK--------- 134 (337)
T ss_dssp CC-------SCSEEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC--E------------EE---------
T ss_pred ce-------eeeecccccCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCcc------------ee---------
Confidence 21 2334443 7999999999999 6789999999999999999876411 11
Q ss_pred cccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEE
Q 004468 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (751)
Q Consensus 207 ~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~ 286 (751)
.....+...|.+++|+| ++.+|++++.|+.|++||+++.+.+..+ .+|.. .|++++
T Consensus 135 --~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~--------------------~~~~~-~i~~~~ 190 (337)
T 1gxr_A 135 --AELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQF--------------------QGHTD-GASCID 190 (337)
T ss_dssp --EEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEE--------------------CCCSS-CEEEEE
T ss_pred --eecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeee--------------------ecccC-ceEEEE
Confidence 11122566799999999 5789999999999999999876533221 12333 599999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCC
Q 004468 287 FSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (751)
Q Consensus 287 fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~ 333 (751)
|+|++++|++++.|+.|++||+.++. ....+.....+..++|+|+.
T Consensus 191 ~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~v~~~~~s~~~ 236 (337)
T 1gxr_A 191 ISNDGTKLWTGGLDNTVRSWDLREGR-QLQQHDFTSQIFSLGYCPTG 236 (337)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTE-EEEEEECSSCEEEEEECTTS
T ss_pred ECCCCCEEEEEecCCcEEEEECCCCc-eEeeecCCCceEEEEECCCC
Confidence 99999999999999999999999854 33333445556666666653
No 42
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=332.48 Aligned_cols=232 Identities=10% Similarity=0.065 Sum_probs=175.2
Q ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECC
Q 004468 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (751)
Q Consensus 46 L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~ 125 (751)
..||.+.|++|+|+|+|++||+|+.||+|+||+..+.+....+ .|...|.+++|+|. ++|++++.|++|+|||+.
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~--~~~~~V~~l~fspg---~~L~S~s~D~~v~lWd~~ 87 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL--EDRSAIKEMRFVKG---IYLVVINAKDTVYVLSLY 87 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC--SSCCCEEEEEEETT---TEEEEEETTCEEEEEETT
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc--CCCCCEEEEEEcCC---CEEEEEECcCeEEEEECC
Confidence 4589999999999999999999999999999999887766554 58899999999993 599999999999999998
Q ss_pred CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004468 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (751)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (751)
++ +++..+. |...|++++|+| ++.+|++|+.||+|++||++++... .+.. ...
T Consensus 88 ~~----------~~~~~~~-~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~-------------~~~i--~~~ 140 (902)
T 2oaj_A 88 SQ----------KVLTTVF-VPGKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLS-------------SFKL--DNL 140 (902)
T ss_dssp TC----------SEEEEEE-CSSCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEE-------------EEEE--CCH
T ss_pred CC----------cEEEEEc-CCCCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccc-------------ccee--ccc
Confidence 64 3456664 778999999999 6789999999999999999876411 0000 000
Q ss_pred ecc-cCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEE
Q 004468 206 RSL-ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (751)
Q Consensus 206 ~~~-~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~ 284 (751)
... .....|...|++++|+|+++.++++|+.|+.| +||+++.+.+..+.....+..... .... ....+|. ..|++
T Consensus 141 ~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~-~~~~-~~~~~h~-~~V~~ 216 (902)
T 2oaj_A 141 QKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGG-DFSE-KTNEKRT-PKVIQ 216 (902)
T ss_dssp HHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCS-TTCC-CTTSCBC-CCEEE
T ss_pred cccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCc-cccc-ccccccC-CCeEE
Confidence 000 22345778999999999767899999999999 999998765443321100000000 0000 0011222 36999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCCc
Q 004468 285 VTFSPNGEEVLLSYSGEHVYLMDVNHAGG 313 (751)
Q Consensus 285 v~fspdg~~Ll~~s~d~~I~lwdl~~~~~ 313 (751)
++|+|+|++|++++.|+.|+|||+.+++.
T Consensus 217 v~fspdg~~lasgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 217 SLYHPNSLHIITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp EEECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCcE
Confidence 99999999999999999999999998653
No 43
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.6e-31 Score=294.47 Aligned_cols=242 Identities=13% Similarity=0.120 Sum_probs=181.1
Q ss_pred ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004468 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~ 106 (751)
+..+++|+. .+.+....+.+| ..+....|++++++||+|+.|+.|+|||+.+++....+ .+|.+.|.+++|+|+
T Consensus 77 d~~v~i~d~--~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~-- 150 (420)
T 3vl1_A 77 DGHDFLFNT--IIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID-QAHVSEITKLKFFPS-- 150 (420)
T ss_dssp TTEEEEEEC--CSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET-TSSSSCEEEEEECTT--
T ss_pred CCcEEEEEe--cccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec-ccccCccEEEEECCC--
Confidence 455666653 333344556666 45556678999999999999999999999988887776 799999999999999
Q ss_pred CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004468 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (751)
Q Consensus 107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~ 186 (751)
+++|++|+.|++|++||+..+ +.+..+.+|...|.+++|+| ++.+|++++.||+|++||+++++.....
T Consensus 151 ~~~l~s~s~d~~i~iwd~~~~----------~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 219 (420)
T 3vl1_A 151 GEALISSSQDMQLKIWSVKDG----------SNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTF 219 (420)
T ss_dssp SSEEEEEETTSEEEEEETTTC----------CCCEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CCEEEEEeCCCeEEEEeCCCC----------cCceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEe
Confidence 799999999999999999864 45788899999999999999 6789999999999999999987643211
Q ss_pred CCC--CCc-cceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCc
Q 004468 187 GSS--HQE-CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (751)
Q Consensus 187 ~~~--~~~-~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~ 263 (751)
... +.. ...+.+....... ....+...+.+++|+| ++.+|++|+.|+.|++||+++.+....+.
T Consensus 220 ~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------- 286 (420)
T 3vl1_A 220 NRKENPHDGVNSIALFVGTDRQ----LHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKEQTIQLP-------- 286 (420)
T ss_dssp CBTTBTTCCEEEEEEEECCCSS----CGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTTCCEEEEEC--------
T ss_pred ecCCCCCCCccEEEEecCCcce----eeecccCcccceEEcC-CCCEEEEEcCCCeEEEEECCCCceeEEcc--------
Confidence 110 000 0001110000000 0011335677788889 57999999999999999998765332210
Q ss_pred cccccccccccCCccccceEEEEEcCCCC-EEEEEeCCCcEEEEECCC
Q 004468 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~vt~v~fspdg~-~Ll~~s~d~~I~lwdl~~ 310 (751)
.+|.. .|++++|+|+++ +|++++.|+.|++||+.+
T Consensus 287 -----------~~~~~-~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 322 (420)
T 3vl1_A 287 -----------SKFTC-SCNSLTVDGNNANYIYAGYENGMLAQWDLRS 322 (420)
T ss_dssp -----------CTTSS-CEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred -----------cccCC-CceeEEEeCCCCCEEEEEeCCCeEEEEEcCC
Confidence 12222 599999999999 999999999999999887
No 44
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.8e-32 Score=293.21 Aligned_cols=213 Identities=17% Similarity=0.206 Sum_probs=168.8
Q ss_pred cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe---cccCCcceEEEEEecCCCCcEEEEEECCC
Q 004468 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI---ETGHSANVFCTKFVPETSDELVVSGAGDA 117 (751)
Q Consensus 41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l---~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg 117 (751)
.......+|.+.|++|+|+|+++ +++++.||+|+|||+.+++.+... ..+|.+.|.+++|+|+ +++|++|+.|+
T Consensus 85 ~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spd--g~~l~sgs~dg 161 (357)
T 4g56_B 85 SLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD--GTQAVSGGKDF 161 (357)
T ss_dssp GGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSS--SSEEEEEETTS
T ss_pred eEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCC--CCEEEEEeCCC
Confidence 34455678999999999999986 556788999999999887654322 2489999999999999 89999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004468 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (751)
Q Consensus 118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l 197 (751)
+|+|||+.++ +++..+.+|...|++++|+|++..+|++++.||+|++||+++++....
T Consensus 162 ~v~iwd~~~~----------~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~------------ 219 (357)
T 4g56_B 162 SVKVWDLSQK----------AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR------------ 219 (357)
T ss_dssp CEEEEETTTT----------EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB------------
T ss_pred eEEEEECCCC----------cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee------------
Confidence 9999999864 557889999999999999997767899999999999999998764311
Q ss_pred EecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCc
Q 004468 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (751)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 277 (751)
.....+...+++++|+|+++.+|++|+.|+.|++||+++.+.+..+ .+|
T Consensus 220 -----------~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~--------------------~~~ 268 (357)
T 4g56_B 220 -----------IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS--------------------AVH 268 (357)
T ss_dssp -----------CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE--------------------CCC
T ss_pred -----------eeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE--------------------ecc
Confidence 1122345678999999987889999999999999999876543222 234
Q ss_pred cccceEEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 004468 278 SSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 278 ~~~~vt~v~fspdg-~~Ll~~s~d~~I~lwdl~~ 310 (751)
.. .|++++|+|++ ++|++++.|+.|+|||+++
T Consensus 269 ~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~ 301 (357)
T 4g56_B 269 SQ-NITGLAYSYHSSPFLASISEDCTVAVLDADF 301 (357)
T ss_dssp SS-CEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred ce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence 33 59999999998 5788999999999999766
No 45
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6e-32 Score=285.47 Aligned_cols=251 Identities=16% Similarity=0.204 Sum_probs=208.6
Q ss_pred cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004468 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (751)
Q Consensus 26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s 105 (751)
.+..+++|+. .+...++.+.+|...|++++|+|++++|++|+.|++|+|||+.+++.+..+ .+|.+.|.+++|+|+
T Consensus 33 ~dg~v~lWd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~- 108 (304)
T 2ynn_A 33 YSGRVELWNY--ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPT- 108 (304)
T ss_dssp TTSEEEEEET--TTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSS-
T ss_pred CCCcEEEEEC--CCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEE-eCCCCcEEEEEEcCC-
Confidence 5678888874 455678899999999999999999999999999999999999999999988 899999999999999
Q ss_pred CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004468 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (751)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~ 185 (751)
+.+|++|+.|++|++||+.... .....+.+|...|.+++|+|.++.+|++|+.||+|++||++.....
T Consensus 109 -~~~l~sgs~D~~v~lWd~~~~~---------~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~-- 176 (304)
T 2ynn_A 109 -KPYVLSGSDDLTVKLWNWENNW---------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN-- 176 (304)
T ss_dssp -SSEEEEEETTSCEEEEEGGGTT---------EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS--
T ss_pred -CCEEEEECCCCeEEEEECCCCc---------chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc--
Confidence 7999999999999999998531 3356788999999999999977889999999999999999876532
Q ss_pred CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCC-CCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004468 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST-RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (751)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~ 264 (751)
..+ ...+...+..++|+|. ++.+|++|+.|+.|++||+++.+.+..
T Consensus 177 ---------~~~-------------~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~----------- 223 (304)
T 2ynn_A 177 ---------FTL-------------TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT----------- 223 (304)
T ss_dssp ---------EEE-------------ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEE-----------
T ss_pred ---------cee-------------ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcccee-----------
Confidence 011 1124456888899873 467999999999999999987653322
Q ss_pred ccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCC
Q 004468 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 335 (751)
Q Consensus 265 ~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~ 335 (751)
+ .+|.. .|++++|+|++++|++++.|+.|+|||+.+.+.......+...+..++++|....
T Consensus 224 --~-------~~h~~-~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (304)
T 2ynn_A 224 --L-------EGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK 284 (304)
T ss_dssp --E-------ECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGG
T ss_pred --e-------CCCCC-CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCc
Confidence 2 34544 5999999999999999999999999999997655555555666778888887654
No 46
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=8.9e-32 Score=286.26 Aligned_cols=223 Identities=16% Similarity=0.235 Sum_probs=185.3
Q ss_pred ccccccccchhhhcc---ccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEE
Q 004468 25 DVNHSLQMHSSLVRR---LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101 (751)
Q Consensus 25 ~~~~~l~~~~~~i~~---~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~f 101 (751)
..+..+++|+..... ..++++|++|...|++++|+|+|++|+||+.|++|+|||+.+++.+..+ .+|...|.+++|
T Consensus 37 s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~-~~h~~~v~~~~~ 115 (319)
T 3frx_A 37 SRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF-VGHKSDVMSVDI 115 (319)
T ss_dssp ETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEE
T ss_pred cCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEE-ccCCCcEEEEEE
Confidence 346778888653222 3457889999999999999999999999999999999999999999988 899999999999
Q ss_pred ecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecC-----CCCEEEEEeCCCcEEEEe
Q 004468 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-----NPHVVWSASEDGTLRQHD 176 (751)
Q Consensus 102 sp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-----~~~~l~s~s~Dg~I~iwD 176 (751)
+|+ +.+|++|+.|++|+|||+.. .++..+.+|...|.+++|.|. ++.+|++++.|++|++||
T Consensus 116 ~~~--~~~l~s~s~D~~i~vwd~~~-----------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd 182 (319)
T 3frx_A 116 DKK--ASMIISGSRDKTIKVWTIKG-----------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182 (319)
T ss_dssp CTT--SCEEEEEETTSCEEEEETTS-----------CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEE
T ss_pred cCC--CCEEEEEeCCCeEEEEECCC-----------CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEE
Confidence 999 79999999999999999973 457788899999999999984 334899999999999999
Q ss_pred cCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCC
Q 004468 177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK 256 (751)
Q Consensus 177 lr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~ 256 (751)
+++.+.. ....+|...|++++|+| ++.+|++|+.|+.|+|||+++.+.+..+
T Consensus 183 ~~~~~~~-------------------------~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~~~~~~~~-- 234 (319)
T 3frx_A 183 LNQFQIE-------------------------ADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTL-- 234 (319)
T ss_dssp TTTTEEE-------------------------EEECCCCSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEE--
T ss_pred CCcchhh-------------------------eeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEe--
Confidence 9875411 11224678899999999 5899999999999999999876533221
Q ss_pred CCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
..+ ..|.+++|+|++.+|++++. +.+++|++..
T Consensus 235 ------------------~~~--~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~ 267 (319)
T 3frx_A 235 ------------------SAQ--DEVFSLAFSPNRYWLAAATA-TGIKVFSLDP 267 (319)
T ss_dssp ------------------ECC--SCEEEEEECSSSSEEEEEET-TEEEEEEETT
T ss_pred ------------------cCC--CcEEEEEEcCCCCEEEEEcC-CCcEEEEeCc
Confidence 111 15999999999999888775 4699999876
No 47
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=7.3e-32 Score=299.56 Aligned_cols=233 Identities=15% Similarity=0.272 Sum_probs=166.6
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-----------EEEEecccCC------------cceEEEEEecC
Q 004468 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-----------LLHSIETGHS------------ANVFCTKFVPE 104 (751)
Q Consensus 48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~-----------~~~~l~~~h~------------~~V~~v~fsp~ 104 (751)
.|.+.|++|+|+|+|++||+|+.||.|+|||+.++. ....+ .+|. ..|.+++|+|+
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF-QSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE-ECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc-ccccccccccccccccCceEEEEEcCC
Confidence 478999999999999999999999999999998776 46666 7898 88999999999
Q ss_pred CCCcEEEEEECCCcEEEEECCCCCCCC-----------------CCCCCC------------CCcee-ecccCCceeEEE
Q 004468 105 TSDELVVSGAGDAEVRLFNLSRFSGRG-----------------LDDNAI------------TPSAL-YQCHTRRVKKLA 154 (751)
Q Consensus 105 s~~~~l~sgs~Dg~V~vwd~~~~~~~~-----------------~~~~~~------------~~~~~-~~~h~~~V~~l~ 154 (751)
.+..+|++++.|++|++||+....... ...... .+... ..+|...|.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 322799999999999999997521100 000000 00112 468999999999
Q ss_pred EecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEE
Q 004468 155 VEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG 234 (751)
Q Consensus 155 ~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sg 234 (751)
|+| ++.+|++| .||+|++||++....+ ..++.... .....|...|++++|+|+++.+|++|
T Consensus 185 ~~~-~~~~l~s~-~d~~i~iwd~~~~~~~-----------~~~~~~~~------~~~~~~~~~v~~~~~~p~~~~~l~s~ 245 (447)
T 3dw8_B 185 INS-DYETYLSA-DDLRINLWHLEITDRS-----------FNIVDIKP------ANMEELTEVITAAEFHPNSCNTFVYS 245 (447)
T ss_dssp ECT-TSSEEEEE-CSSEEEEEETTEEEEE-----------EEEEECCC------SSGGGCCCCEEEEEECSSCTTEEEEE
T ss_pred EcC-CCCEEEEe-CCCeEEEEECCCCCce-----------eeeeeccc------ccccccCcceEEEEECCCCCcEEEEE
Confidence 999 67899898 8999999999853211 11111110 11234677899999999644899999
Q ss_pred eCCCeEEEEeCCCCCC----ccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 235 GSDAFARLYDRRMLPP----LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 235 s~D~~IriwD~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
+.|+.|++||+++.+. +..+.....+ .....+ .+|. ..|++++|+|+|++|++++. +.|+|||+.+
T Consensus 246 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~-~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~ 315 (447)
T 3dw8_B 246 SSKGTIRLCDMRASALCDRHSKLFEEPEDP-SNRSFF-------SEII-SSISDVKFSHSGRYMMTRDY-LSVKVWDLNM 315 (447)
T ss_dssp ETTSCEEEEETTTCSSSCTTCEEECCC------CCHH-------HHHT-TCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred eCCCeEEEEECcCCccccceeeEeccCCCc-cccccc-------cccC-ceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence 9999999999998764 2221110000 000000 0111 25999999999999999999 9999999986
No 48
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.7e-31 Score=298.71 Aligned_cols=227 Identities=19% Similarity=0.349 Sum_probs=174.5
Q ss_pred ccEEeccCCCcE-EEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEE
Q 004468 42 QERELEGHQGCV-NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (751)
Q Consensus 42 ~~~~L~gH~~~V-~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~ 120 (751)
...+|.+|.+.| .++.| ++++|++|+.||+|+|||+.+++.+..+ .+|.+.|.+++|+|+ + +|++|+.|++|+
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~-~~h~~~V~~l~~~~~--~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAHG--G-ILVSGSTDRTVR 186 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECST--T-EEEEEETTSCEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEE-eCCCcCEEEEEEcCC--C-EEEEEeCCCCEE
Confidence 456899999885 66666 5789999999999999999999999999 799999999999988 4 999999999999
Q ss_pred EEECCCCCCCCCCCCCCCCceeecccCCceeEEEEec-CCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV-GNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (751)
Q Consensus 121 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (751)
+||+.++ +++..+.+|...|.+++|++ .++.+|++|+.||+|++||+++............ . .....
T Consensus 187 vwd~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-~-~~~~~ 254 (464)
T 3v7d_B 187 VWDIKKG----------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-Y-PLVFH 254 (464)
T ss_dssp EEETTTT----------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC-S-SEEES
T ss_pred EEECCCC----------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC-c-ceEee
Confidence 9999864 55788999999999999996 2568999999999999999998764422111110 0 11111
Q ss_pred cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc
Q 004468 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (751)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (751)
...+....+....+|...+.++. + ++.++++|+.|+.|++||+++.+.+..+ .+|..
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~--------------------~~~~~ 311 (464)
T 3v7d_B 255 TPEENPYFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNTLIVWDVAQMKCLYIL--------------------SGHTD 311 (464)
T ss_dssp CGGGCTTEEEEECCCSSCEEEEE--E-ETTEEEEEETTSCEEEEETTTTEEEEEE--------------------CCCSS
T ss_pred ccCCCeEEEEEccCccceEEEEc--C-CCCEEEEEeCCCeEEEEECCCCcEEEEe--------------------cCCCC
Confidence 11111111222344666777764 4 3679999999999999999876543222 23433
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 280 ~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
.|++++|+|++++|++++.|+.|++||+.+
T Consensus 312 -~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 341 (464)
T 3v7d_B 312 -RIYSTIYDHERKRCISASMDTTIRIWDLEN 341 (464)
T ss_dssp -CEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred -CEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 599999999999999999999999999876
No 49
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.2e-31 Score=291.05 Aligned_cols=255 Identities=13% Similarity=0.190 Sum_probs=188.7
Q ss_pred HHHhhhccCcCcc-----cccccccchhhhccccccEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEE
Q 004468 13 DMLDTRHTDTRPD-----VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLH 86 (751)
Q Consensus 13 ~~l~~r~~~~~~~-----~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~~~ 86 (751)
.+|..|..+.... .+..++++.. ...+....+.+|.+.|++++|+| ++++||+|+.||.|+|||+.++....
T Consensus 3 ~~l~~r~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 80 (408)
T 4a11_B 3 GFLSARQTGLEDPLRLRRAESTRRVLGL--ELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQS 80 (408)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHTE--EECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSS
T ss_pred ccccccccCccCccceeeccCcceeecc--ccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence 4555665554321 2334445443 44456788899999999999999 99999999999999999998776544
Q ss_pred Eec------------ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEE
Q 004468 87 SIE------------TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLA 154 (751)
Q Consensus 87 ~l~------------~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 154 (751)
.+. .+|...|.+++|+|+. +.+|++++.|+.|++||+... +.+..+. +...+.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~----------~~~~~~~-~~~~~~~~~ 148 (408)
T 4a11_B 81 YYTCKAVCSIGRDHPDVHRYSVETVQWYPHD-TGMFTSSSFDKTLKVWDTNTL----------QTADVFN-FEETVYSHH 148 (408)
T ss_dssp CEEECEEEEECTTCTTCCSSCEEEEEECTTC-TTCEEEEETTSEEEEEETTTT----------EEEEEEE-CSSCEEEEE
T ss_pred eEeccccccccccccccCCCcEEEEEEccCC-CcEEEEEeCCCeEEEeeCCCC----------ccceecc-CCCceeeeE
Confidence 431 2599999999999953 689999999999999999864 3344444 788899999
Q ss_pred EecCC--CCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEE
Q 004468 155 VEVGN--PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL 232 (751)
Q Consensus 155 ~sp~~--~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~ 232 (751)
|+|.+ +.++++++.||.|++||+++++.. .....|...|.+++|+|++..+++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-------------------------~~~~~~~~~v~~~~~~~~~~~ll~ 203 (408)
T 4a11_B 149 MSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS-------------------------HILQGHRQEILAVSWSPRYDYILA 203 (408)
T ss_dssp ECSSCSSCCEEEEEESSSSEEEEESSSSCCC-------------------------EEECCCCSCEEEEEECSSCTTEEE
T ss_pred eecCCCCCcEEEEEcCCCeEEEEeCCCccee-------------------------eeecCCCCcEEEEEECCCCCcEEE
Confidence 99853 348999999999999999886532 111236678999999997555799
Q ss_pred EEeCCCeEEEEeCCCCCC-ccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468 233 VGGSDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 233 sgs~D~~IriwD~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
+|+.|+.|++||+++... +..+....... .........+|.. .|++++|+|+|++|++++.|+.|++||+.++
T Consensus 204 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 277 (408)
T 4a11_B 204 TASADSRVKLWDVRRASGCLITLDQHNGKK-----SQAVESANTAHNG-KVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277 (408)
T ss_dssp EEETTSCEEEEETTCSSCCSEECCTTTTCS-----CCCTTTSSCSCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred EEcCCCcEEEEECCCCCccccccccccccc-----ceeeccccccccC-ceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Confidence 999999999999987652 22211100000 0000001123333 6999999999999999999999999999985
Q ss_pred C
Q 004468 312 G 312 (751)
Q Consensus 312 ~ 312 (751)
.
T Consensus 278 ~ 278 (408)
T 4a11_B 278 E 278 (408)
T ss_dssp C
T ss_pred c
Confidence 4
No 50
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.1e-31 Score=289.95 Aligned_cols=225 Identities=17% Similarity=0.214 Sum_probs=184.6
Q ss_pred cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC------eEEEEecccCCcceEEE
Q 004468 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR------KLLHSIETGHSANVFCT 99 (751)
Q Consensus 26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~------~~~~~l~~~h~~~V~~v 99 (751)
.+..+++|+.. +.+..+.+..|...|.+++|+|+|++||+|+.|+.++||++... .....+ .+|.+.|.++
T Consensus 84 ~Dg~v~vWd~~--~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~-~~h~~~v~~~ 160 (354)
T 2pbi_B 84 QDGKVIVWDSF--TTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSV-AMHTNYLSAC 160 (354)
T ss_dssp TTSEEEEEETT--TCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEE-EECSSCEEEE
T ss_pred CCCeEEEEECC--CCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceee-eccCCcEEEE
Confidence 45677787643 44567788899999999999999999999999999999998643 233445 6899999999
Q ss_pred EEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecC-CCCEEEEEeCCCcEEEEecC
Q 004468 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASEDGTLRQHDFR 178 (751)
Q Consensus 100 ~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~~l~s~s~Dg~I~iwDlr 178 (751)
+|+|+ +..|++|+.|++|++||+.++ +++..+.+|...|.+++|+|. ++.+|++|+.||+|++||++
T Consensus 161 ~~~~~--~~~l~t~s~D~~v~lwd~~~~----------~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~ 228 (354)
T 2pbi_B 161 SFTNS--DMQILTASGDGTCALWDVESG----------QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR 228 (354)
T ss_dssp EECSS--SSEEEEEETTSEEEEEETTTC----------CEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETT
T ss_pred EEeCC--CCEEEEEeCCCcEEEEeCCCC----------eEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 99999 789999999999999999864 557889999999999999884 35799999999999999999
Q ss_pred CCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCC
Q 004468 179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM 258 (751)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~ 258 (751)
+++.. .....|...|++++|+|+ +.+|++|+.|++|++||++....+..+.
T Consensus 229 ~~~~~-------------------------~~~~~h~~~v~~v~~~p~-~~~l~s~s~D~~v~lwd~~~~~~~~~~~--- 279 (354)
T 2pbi_B 229 SGQCV-------------------------QAFETHESDVNSVRYYPS-GDAFASGSDDATCRLYDLRADREVAIYS--- 279 (354)
T ss_dssp TCCEE-------------------------EEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEEC---
T ss_pred CCcEE-------------------------EEecCCCCCeEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcEEEEEc---
Confidence 87521 112236778999999995 7899999999999999998754322110
Q ss_pred CCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
. . .....+++++|+|+|++|++++.|+.|+|||+.+
T Consensus 280 ----------~-----~-~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~ 315 (354)
T 2pbi_B 280 ----------K-----E-SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLK 315 (354)
T ss_dssp ----------C-----T-TCCSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ----------C-----C-CcccceeEEEEeCCCCEEEEEECCCcEEEEECCC
Confidence 0 0 1112589999999999999999999999999866
No 51
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-31 Score=287.74 Aligned_cols=244 Identities=15% Similarity=0.207 Sum_probs=186.8
Q ss_pred ccccccccchhhhccccccE-EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC--eEEEEecccCCcceEEEEE
Q 004468 25 DVNHSLQMHSSLVRRLSQER-ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCTKF 101 (751)
Q Consensus 25 ~~~~~l~~~~~~i~~~~~~~-~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~--~~~~~l~~~h~~~V~~v~f 101 (751)
..+..+++|+....+..... .+.+|.+.|++|+|+|+|++||+|+.|++|+||++..+ +.+..+ .+|...|.+++|
T Consensus 35 ~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~-~~h~~~v~~v~~ 113 (345)
T 3fm0_A 35 GGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTL-EGHENEVKSVAW 113 (345)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEE-CCCSSCEEEEEE
T ss_pred cCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEc-cCCCCCceEEEE
Confidence 35678888875544433333 34799999999999999999999999999999998766 356666 899999999999
Q ss_pred ecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCC
Q 004468 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (751)
Q Consensus 102 sp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~ 181 (751)
+|+ +++|++|+.|++|++||+..... ..++..+.+|...|.+++|+| ++.+|++++.|++|++||++.+.
T Consensus 114 sp~--~~~l~s~s~D~~v~iwd~~~~~~-------~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~ 183 (345)
T 3fm0_A 114 APS--GNLLATCSRDKSVWVWEVDEEDE-------YECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDD 183 (345)
T ss_dssp CTT--SSEEEEEETTSCEEEEEECTTSC-------EEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTE
T ss_pred eCC--CCEEEEEECCCeEEEEECCCCCC-------eEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCC
Confidence 999 89999999999999999985421 134667889999999999999 66899999999999999987653
Q ss_pred CCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCC--C
Q 004468 182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM--S 259 (751)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~--~ 259 (751)
.. .+....+|...|++++|+|+ +.+|++|+.|++|+|||.............. .
T Consensus 184 ~~-----------------------~~~~~~~h~~~v~~l~~sp~-g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~ 239 (345)
T 3fm0_A 184 WV-----------------------CCATLEGHESTVWSLAFDPS-GQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDP 239 (345)
T ss_dssp EE-----------------------EEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEEEECTTCTTCCCCC---C
T ss_pred EE-----------------------EEEEecCCCCceEEEEECCC-CCEEEEEeCCCeEEEeccccCCCCccceeeccCC
Confidence 10 01122347788999999994 7999999999999999975432211110000 0
Q ss_pred CCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
...|+..+ .+.....|++++|+|++..|++++.|+.|++|++..
T Consensus 240 ~~~~~~~~-------~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~ 283 (345)
T 3fm0_A 240 SWKCICTL-------SGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDP 283 (345)
T ss_dssp EEEEEEEE-------CSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECT
T ss_pred ccceeEEe-------cCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCC
Confidence 00111111 121223699999999999999999999999999766
No 52
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4e-32 Score=288.57 Aligned_cols=218 Identities=12% Similarity=0.176 Sum_probs=167.3
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe--EEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEE
Q 004468 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (751)
Q Consensus 44 ~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~--~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~v 121 (751)
..+.+|.+.|++++|+|+|++||||+.|++|+|||+.++. .+..+ .+|.+.|.+++|+|..++++|+||+.|++|+|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEE-ECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEE-cCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 3578999999999999999999999999999999998764 45566 79999999999986422689999999999999
Q ss_pred EECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCC-CCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEec
Q 004468 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (751)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (751)
||+..+.. .++..+.+|...|++++|+|++ +.+|++|+.||+|++||++.....
T Consensus 86 Wd~~~~~~--------~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~----------------- 140 (316)
T 3bg1_A 86 WREENGTW--------EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW----------------- 140 (316)
T ss_dssp ECCSSSCC--------CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE-----------------
T ss_pred EECCCCcc--------eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc-----------------
Confidence 99985321 3456788999999999999953 679999999999999999875311
Q ss_pred ccCceecccCCCCCccceEEEEEeCCC----------------CcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004468 201 RCGAKRSLADPPKQTLSLKSCDISSTR----------------PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (751)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~----------------~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~ 264 (751)
........|...|.+++|+|+. +.+|++|+.|+.|++||++...... +.
T Consensus 141 -----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~----------~~ 205 (316)
T 3bg1_A 141 -----EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWK----------EE 205 (316)
T ss_dssp -----EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEE----------EE
T ss_pred -----ceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccc----------ee
Confidence 0011223466678888888852 3689999999999999986432100 11
Q ss_pred ccccccccccCCccccceEEEEEcCCC----CEEEEEeCCCcEEEEECCC
Q 004468 265 NYFCPMHLSEHGRSSLHLTHVTFSPNG----EEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 265 ~~~~~~~~~~~g~~~~~vt~v~fspdg----~~Ll~~s~d~~I~lwdl~~ 310 (751)
..+ .+|.. .|++++|+|++ ++|++++.|++|+|||+.+
T Consensus 206 ~~l-------~~h~~-~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 206 QKL-------EAHSD-WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ECC-------BCCSS-CEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred eec-------ccCCC-ceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 111 34554 69999999987 8899999999999999876
No 53
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.7e-31 Score=295.79 Aligned_cols=203 Identities=23% Similarity=0.386 Sum_probs=168.5
Q ss_pred cccccEEeccCCCcE-EEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004468 39 RLSQERELEGHQGCV-NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (751)
Q Consensus 39 ~~~~~~~L~gH~~~V-~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg 117 (751)
+.+..+.|.+|.+.| .++. ++|++|++|+.||+|+|||+.+++.+..+ .+|.+.|.+++|+ +.+|++|+.|+
T Consensus 107 ~~~~~~~l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~----~~~l~s~~~dg 179 (445)
T 2ovr_B 107 ELKSPKVLKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMR----DNIIISGSTDR 179 (445)
T ss_dssp CCCCCEEEECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEE----TTEEEEEETTS
T ss_pred CcceeEEecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCCCcEEEEE-cCCCCCEEEEEec----CCEEEEEeCCC
Confidence 345678899999975 5554 46899999999999999999999999988 7999999999997 35999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004468 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (751)
Q Consensus 118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l 197 (751)
+|++||+.++ +++..+.+|...|.+++|++ ..+++|+.||+|++||+++++.. .
T Consensus 180 ~i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~-----------~-- 233 (445)
T 2ovr_B 180 TLKVWNAETG----------ECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCL-----------H-- 233 (445)
T ss_dssp CEEEEETTTT----------EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEE-----------E--
T ss_pred eEEEEECCcC----------cEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEE-----------E--
Confidence 9999999864 55788899999999999964 67999999999999999876521 1
Q ss_pred EecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCc
Q 004468 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (751)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 277 (751)
....|...|.+++| ++.++++|+.|+.|++||+++.+.+..+ .+|
T Consensus 234 ------------~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------------------~~~ 278 (445)
T 2ovr_B 234 ------------VLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTL--------------------QGH 278 (445)
T ss_dssp ------------EEECCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEEEE--------------------CCC
T ss_pred ------------EEcCCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeEEe--------------------cCC
Confidence 11236678999999 3578999999999999999876533222 233
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468 278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 278 ~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
.. .|+++.| ++.+|++++.|+.|++||+.++.
T Consensus 279 ~~-~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~ 310 (445)
T 2ovr_B 279 TN-RVYSLQF--DGIHVVSGSLDTSIRVWDVETGN 310 (445)
T ss_dssp SS-CEEEEEE--CSSEEEEEETTSCEEEEETTTCC
T ss_pred CC-ceEEEEE--CCCEEEEEeCCCeEEEEECCCCC
Confidence 33 5999999 89999999999999999999864
No 54
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1e-31 Score=310.71 Aligned_cols=136 Identities=16% Similarity=0.141 Sum_probs=120.2
Q ss_pred ccccchhhhccccccEEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCc---ceEEEEEecC
Q 004468 29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSA---NVFCTKFVPE 104 (751)
Q Consensus 29 ~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~---~V~~v~fsp~ 104 (751)
.+.+|+ ..+....+.+|.+.|++++|+|+++ +|++|+.|+.|+|||+.+++.+..+ .+|.. .|.+++|+|+
T Consensus 143 ~v~~~d----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~ 217 (615)
T 1pgu_A 143 VFISWD----SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD-RTHHKQGSFVRDVEFSPD 217 (615)
T ss_dssp EEEETT----TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE-CSSSCTTCCEEEEEECST
T ss_pred EEEEEE----CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeee-cccCCCCceEEEEEECCC
Confidence 455555 3457788999999999999999998 8999999999999999999999988 78999 9999999998
Q ss_pred CCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceee-c---ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 004468 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY-Q---CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (751)
Q Consensus 105 s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~---~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~ 180 (751)
. +++|++++.|+.|++||+..+ +++..+ . .|...|.+++|+ ++.+|++++.||+|++||++++
T Consensus 218 ~-~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~ 284 (615)
T 1pgu_A 218 S-GEFVITVGSDRKISCFDGKSG----------EFLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTS 284 (615)
T ss_dssp T-CCEEEEEETTCCEEEEETTTC----------CEEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTT
T ss_pred C-CCEEEEEeCCCeEEEEECCCC----------CEeEEecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCC
Confidence 4 589999999999999999864 446666 5 899999999999 6689999999999999999987
Q ss_pred CC
Q 004468 181 SS 182 (751)
Q Consensus 181 ~~ 182 (751)
+.
T Consensus 285 ~~ 286 (615)
T 1pgu_A 285 KC 286 (615)
T ss_dssp EE
T ss_pred cE
Confidence 54
No 55
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.6e-32 Score=297.91 Aligned_cols=232 Identities=20% Similarity=0.292 Sum_probs=185.4
Q ss_pred cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-------EEEEecccCCcceEE
Q 004468 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-------LLHSIETGHSANVFC 98 (751)
Q Consensus 26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~-------~~~~l~~~h~~~V~~ 98 (751)
.+..+++|+. .+.+..+++.+|...|.+++|+|+|++||+|+.|+.|+|||+.+.. ....+ .+|.+.|.+
T Consensus 86 ~D~~v~iWd~--~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~-~gh~~~v~~ 162 (380)
T 3iz6_a 86 QDGRLIVWNA--LTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVL-TGHKGYASS 162 (380)
T ss_dssp TTSEEEEEET--TTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBC-CCCSSCCCC
T ss_pred CCCeEEEEEC--CCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeec-cCCCcceEE
Confidence 4677888874 3456788999999999999999999999999999999999986432 22334 799999999
Q ss_pred EEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceee-----cccCCceeEEEEecCCCCEEEEEeCCCcEE
Q 004468 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY-----QCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173 (751)
Q Consensus 99 v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~-----~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~ 173 (751)
+.|+|+. +..|++|+.|++|++||+.++ +++..+ .+|...|.+++|++.++.+|++|+.||+|+
T Consensus 163 ~~~~~~~-~~~l~s~s~D~~i~~wd~~~~----------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~ 231 (380)
T 3iz6_a 163 CQYVPDQ-ETRLITGSGDQTCVLWDVTTG----------QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVR 231 (380)
T ss_dssp CBCCSSS-SSCEEEECTTSCEEEECTTTC----------CEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEE
T ss_pred EEEecCC-CCEEEEECCCCcEEEEEcCCC----------cEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEE
Confidence 9999985 578999999999999999865 334444 679999999999887889999999999999
Q ss_pred EEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccc
Q 004468 174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253 (751)
Q Consensus 174 iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~ 253 (751)
+||++....+ +....+|...|++++|+| ++.+|++|+.|++|++||++++..+..
T Consensus 232 ~wd~~~~~~~------------------------~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~~~ 286 (380)
T 3iz6_a 232 LWDLRITSRA------------------------VRTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQLQV 286 (380)
T ss_dssp EEETTTTCCC------------------------CEEECCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEEEEE
T ss_pred EEECCCCCcc------------------------eEEECCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcEEEE
Confidence 9999854321 112234778899999999 479999999999999999998764433
Q ss_pred cCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
+... ......+ ...|++++|+|+|++|++|+.|+.|++||+..
T Consensus 287 ~~~~-------------~~~~~~~-~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~ 329 (380)
T 3iz6_a 287 YNRE-------------PDRNDNE-LPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL 329 (380)
T ss_dssp ECCC-------------CSSSCCS-SCSCSEEEECSSSSEEEEECTTSCEEEEETTT
T ss_pred eccc-------------ccccccc-cCceEEEEECCCCCEEEEEECCCCEEEEECCC
Confidence 2111 0000011 12489999999999999999999999999876
No 56
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-31 Score=284.42 Aligned_cols=239 Identities=18% Similarity=0.207 Sum_probs=178.1
Q ss_pred cccccccchhhhccccccEEe-cc-CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC-------CeEEEEecccCCcce
Q 004468 26 VNHSLQMHSSLVRRLSQEREL-EG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-------RKLLHSIETGHSANV 96 (751)
Q Consensus 26 ~~~~l~~~~~~i~~~~~~~~L-~g-H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~-------~~~~~~l~~~h~~~V 96 (751)
.+..+++|+......++..++ .+ |.+.|++|+|+|++++||+|+.|++|+|||+.. ...+..+ .+|...|
T Consensus 32 ~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~h~~~V 110 (330)
T 2hes_X 32 TDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII-EGHENEV 110 (330)
T ss_dssp SSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEE-C----CE
T ss_pred CCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEE-cCCCCcE
Confidence 467788887654445566677 45 999999999999999999999999999999842 3455666 7999999
Q ss_pred EEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEe
Q 004468 97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD 176 (751)
Q Consensus 97 ~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwD 176 (751)
.+++|+|+ +++|++|+.|++|+|||+...... .+++..+.+|...|.+++|+| ++.+|++|+.|++|++||
T Consensus 111 ~~v~~sp~--g~~las~s~D~~v~iwd~~~~~~~------~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~ 181 (330)
T 2hes_X 111 KGVAWSND--GYYLATCSRDKSVWIWETDESGEE------YECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWK 181 (330)
T ss_dssp EEEEECTT--SCEEEEEETTSCEEEEECCTTCCC------CEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEE
T ss_pred EEEEECCC--CCEEEEEeCCCEEEEEeccCCCCC------eEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEE
Confidence 99999999 899999999999999999532111 145678899999999999999 678999999999999999
Q ss_pred cCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC-CcEEEEEeCCCeEEEEeCCCCCCccccC
Q 004468 177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQ 255 (751)
Q Consensus 177 lr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~sgs~D~~IriwD~~~~~~~~~~~ 255 (751)
++++.. . .+....+|...|.+++|+|+. +.+|++|+.|++|++||++........
T Consensus 182 ~~~~~~---------~--------------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~- 237 (330)
T 2hes_X 182 DYDDDW---------E--------------CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQ- 237 (330)
T ss_dssp EETTEE---------E--------------EEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCE-
T ss_pred CCCCCe---------e--------------EEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccc-
Confidence 876420 0 112223477889999999953 468999999999999998754211000
Q ss_pred CCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
...+...+ ...|.. .|++++|++++ +|++++.|+.|+|||+.+
T Consensus 238 ----~~~~~~~~------~~~h~~-~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~ 280 (330)
T 2hes_X 238 ----EWVCEAIL------PDVHKR-QVYNVAWGFNG-LIASVGADGVLAVYEEVD 280 (330)
T ss_dssp ----EEEEEEEC------CSCCSS-CEEEEEECTTS-CEEEEETTSCEEEEEEET
T ss_pred ----eeEEeeec------cccccc-ceEEEEEcCCC-EEEEEeCCCEEEEEEcCC
Confidence 00011111 011333 69999999765 799999999999999654
No 57
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.4e-31 Score=305.43 Aligned_cols=250 Identities=13% Similarity=0.131 Sum_probs=197.5
Q ss_pred cccccccchhhhc------cccccEEeccCCCcEEEEEECCCCCEEEEEeCC----CcEEEEeCCCCeEEEEecccCCcc
Q 004468 26 VNHSLQMHSSLVR------RLSQERELEGHQGCVNAISWNSKGSLLISGSDD----THINVWSYSSRKLLHSIETGHSAN 95 (751)
Q Consensus 26 ~~~~l~~~~~~i~------~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~D----g~I~IWd~~~~~~~~~l~~~h~~~ 95 (751)
.+..+++|+.... ..++.+.+.+|.+.|.+++|+|+|++|++++.| +.|.+|| .++.+..+ .+|...
T Consensus 86 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~-~~~~~~ 162 (615)
T 1pgu_A 86 ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEV-SGHSQR 162 (615)
T ss_dssp TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEEC-CSCSSC
T ss_pred CCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceee-ecCCcc
Confidence 3667888876544 557788999999999999999999999999988 6888888 56677777 799999
Q ss_pred eEEEEEecCCCCc-EEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCC---ceeEEEEecCCCCEEEEEeCCCc
Q 004468 96 VFCTKFVPETSDE-LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR---RVKKLAVEVGNPHVVWSASEDGT 171 (751)
Q Consensus 96 V~~v~fsp~s~~~-~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~sp~~~~~l~s~s~Dg~ 171 (751)
|.+++|+|+ +. +|++++.|+.|++||+... +++..+.+|.. .|.+++|+|+++.+|++++.||.
T Consensus 163 v~~~~~~~~--~~~~l~~~~~d~~v~vwd~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 230 (615)
T 1pgu_A 163 INACHLKQS--RPMRSMTVGDDGSVVFYQGPPF----------KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK 230 (615)
T ss_dssp EEEEEECSS--SSCEEEEEETTTEEEEEETTTB----------EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC
T ss_pred EEEEEECCC--CCcEEEEEeCCCcEEEEeCCCc----------ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe
Confidence 999999999 55 8999999999999998864 55778889999 99999999943789999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 004468 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (751)
Q Consensus 172 I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~ 251 (751)
|++||+++++.. ..+. .....|...|.+++|+ ++.+|++++.|+.|++||+++.+.+
T Consensus 231 i~vwd~~~~~~~--------------~~~~-------~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~ 287 (615)
T 1pgu_A 231 ISCFDGKSGEFL--------------KYIE-------DDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTSKCV 287 (615)
T ss_dssp EEEEETTTCCEE--------------EECC-------BTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEEECCCCCEe--------------EEec-------ccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEE
Confidence 999999886522 1100 0001367789999999 5799999999999999999876543
Q ss_pred cccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCC
Q 004468 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (751)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp 331 (751)
..+... . ......+.++.|+ ++++|++++.|+.|++||+.++........+...+..++| |
T Consensus 288 ~~~~~~--------------~---~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~ 348 (615)
T 1pgu_A 288 QKWTLD--------------K---QQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-N 348 (615)
T ss_dssp EEEECC--------------T---TCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-T
T ss_pred EEEcCC--------------C---CcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-c
Confidence 332110 0 0111247888886 9999999999999999999986555555556666777777 6
Q ss_pred C
Q 004468 332 T 332 (751)
Q Consensus 332 ~ 332 (751)
+
T Consensus 349 ~ 349 (615)
T 1pgu_A 349 P 349 (615)
T ss_dssp T
T ss_pred C
Confidence 5
No 58
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-31 Score=319.57 Aligned_cols=298 Identities=10% Similarity=0.020 Sum_probs=193.6
Q ss_pred cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE----------EecccCCcc
Q 004468 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH----------SIETGHSAN 95 (751)
Q Consensus 26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~----------~l~~~h~~~ 95 (751)
.+..+++|+.. +.++++++. |.+.|++++|+|++++|++|+.||+|+|||+.+++... ....+|.+.
T Consensus 77 ~D~~v~lWd~~--~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~ 153 (902)
T 2oaj_A 77 AKDTVYVLSLY--SQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSP 153 (902)
T ss_dssp TTCEEEEEETT--TCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCC
T ss_pred CcCeEEEEECC--CCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCC
Confidence 46778888743 445667775 77899999999999999999999999999999887541 112679999
Q ss_pred eEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecc------------------cCCceeEEEEec
Q 004468 96 VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC------------------HTRRVKKLAVEV 157 (751)
Q Consensus 96 V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~------------------h~~~V~~l~~sp 157 (751)
|.+++|+|+. +.+|++|+.|+.| |||+... +++..+.. |...|.+++|+|
T Consensus 154 V~sl~~sp~~-~~~l~~g~~dg~v-lWd~~~~----------~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp 221 (902)
T 2oaj_A 154 IVSIQWNPRD-IGTVLISYEYVTL-TYSLVEN----------EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP 221 (902)
T ss_dssp CCEEEEETTE-EEEEEEECSSCEE-EEETTTT----------EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred eEEEEEccCC-CCEEEEEeCCCcE-EEECCCC----------ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence 9999999973 4789999999999 9999864 23444443 468899999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCCCC--CC--C-C------------CC-ccceEEEecc----------cC------
Q 004468 158 GNPHVVWSASEDGTLRQHDFRQGSSCPP--AG--S-S------------HQ-ECRNILLDLR----------CG------ 203 (751)
Q Consensus 158 ~~~~~l~s~s~Dg~I~iwDlr~~~~~~~--~~--~-~------------~~-~~~~~l~~~~----------~~------ 203 (751)
++.+|++|+.||+|++||+++++.... .. . . +. ....+.|... .+
T Consensus 222 -dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~ 300 (902)
T 2oaj_A 222 -NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRG 300 (902)
T ss_dssp -TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTS
T ss_pred -CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCC
Confidence 678999999999999999998764321 00 0 0 01 1111222100 00
Q ss_pred ---ceecccC---------------------------CCCCccceEEEEEeC---------CCCcEEEEEeCCCeEEEEe
Q 004468 204 ---AKRSLAD---------------------------PPKQTLSLKSCDISS---------TRPHLLLVGGSDAFARLYD 244 (751)
Q Consensus 204 ---~~~~~~~---------------------------~~~~~~~v~~i~~sp---------~~~~~l~sgs~D~~IriwD 244 (751)
....+.. ...+...|.++.+.+ .++..+++++.|+.|++||
T Consensus 301 ~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~ 380 (902)
T 2oaj_A 301 DNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETML 380 (902)
T ss_dssp SCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEE
T ss_pred CCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEE
Confidence 0000000 001234566666654 1345788888899999999
Q ss_pred CCCCCCccc-------cCCCCCCCCcccccc---------------ccccccCCccccceEEEEEcCCCCEEEEEeCCCc
Q 004468 245 RRMLPPLTS-------CQKRMSPPPCVNYFC---------------PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEH 302 (751)
Q Consensus 245 ~~~~~~~~~-------~~~~~~~~~~~~~~~---------------~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~ 302 (751)
+.++..... +.....+..++. +. .......||.. .+.+++|+|+|++|++++.|++
T Consensus 381 ~~~g~~~~~~~~~~~~l~~~~~~v~~~~-~s~~~~~~w~~~~~~~~~~~~~l~G~~~-~v~sv~~spdg~~laSgs~Dgt 458 (902)
T 2oaj_A 381 YPSGIFTDKASLFPQNLSWLRPLATTSM-AASVPNKLWLGALSAAQNKDYLLKGGVR-TKRQKLPAEYGTAFITGHSNGS 458 (902)
T ss_dssp TTTCCEECCGGGSCGGGTTBTTBEEEEE-EEEEEHHHHHHHHHTTBCCCCSCCCSBC-CCCCCCCCSEEEEEEEEETTSE
T ss_pred CCCCCcccccccCCCcccccCCCeeEEE-EEEcCHHHHHHHHhcccCCCCcccCCcC-CCCcccccccCcEEEEecCCCc
Confidence 865532211 000000000000 00 00001133443 4677889999999999999999
Q ss_pred EEEEECCCCCcce--eee---------ecCCCceeEEeCCCCCCcccCCC
Q 004468 303 VYLMDVNHAGGRA--MRY---------TVGDASKIMSFTPTLNGLELQPP 341 (751)
Q Consensus 303 I~lwdl~~~~~~~--~~~---------~~~~~~~~~~~sp~~~~~~~~~~ 341 (751)
|++||+.++.... ... .+...+..++|+|+...++....
T Consensus 459 VrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~ 508 (902)
T 2oaj_A 459 VRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIE 508 (902)
T ss_dssp EEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEec
Confidence 9999999864221 111 34567888999998776655543
No 59
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6.2e-31 Score=276.74 Aligned_cols=169 Identities=12% Similarity=0.115 Sum_probs=134.8
Q ss_pred ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecC-CCCEEEEEeC
Q 004468 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASE 168 (751)
Q Consensus 90 ~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~~l~s~s~ 168 (751)
.+|.+.|.+++|+|+ +++|+||+.|++|+|||+..... +++.++.+|.+.|.+++|+|. ++.+|+||+.
T Consensus 6 ~~h~~~V~~~~~s~~--g~~las~s~D~~v~iw~~~~~~~--------~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~ 75 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYY--GKRMATCSSDKTIKIFEVEGETH--------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 75 (297)
T ss_dssp CSCSSCEEEEEECTT--SSEEEEEETTSCEEEEEBCSSCB--------CCCEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred cCCcCceEEEEECCC--CCEEEEEeCCCEEEEEecCCCCc--------EEEEEEccccCCeEEEEecCCCcCCEEEEEcC
Confidence 799999999999999 89999999999999999974322 457889999999999999863 4789999999
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC-CcEEEEEeCCCeEEEEeCCC
Q 004468 169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRM 247 (751)
Q Consensus 169 Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~sgs~D~~IriwD~~~ 247 (751)
||+|++||++++.... +.....|...|.+++|+|+. +.+|++|+.|+.|++||++.
T Consensus 76 D~~v~iWd~~~~~~~~-----------------------~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~ 132 (297)
T 2pm7_B 76 DGKVMIWKEENGRWSQ-----------------------IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKE 132 (297)
T ss_dssp TTEEEEEEBSSSCBCC-----------------------CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCS
T ss_pred CCEEEEEEcCCCceEE-----------------------EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecC
Confidence 9999999998754110 11112366789999999952 68999999999999999986
Q ss_pred CCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCC-------------CCEEEEEeCCCcEEEEECCC
Q 004468 248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-------------GEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspd-------------g~~Ll~~s~d~~I~lwdl~~ 310 (751)
..... ...+ .+|.. .|++++|+|+ +++|++++.|+.|+|||+.+
T Consensus 133 ~~~~~-----------~~~~-------~~h~~-~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~ 189 (297)
T 2pm7_B 133 NGTTS-----------PIII-------DAHAI-GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189 (297)
T ss_dssp SSCBC-----------CEEE-------ECCSS-CEEEEEECCCC------------CCEEEEEETTSCEEEEEEET
T ss_pred CCcee-----------eeee-------ecccC-ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC
Confidence 42110 0001 23443 5999999997 57999999999999999766
No 60
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.8e-31 Score=289.79 Aligned_cols=203 Identities=19% Similarity=0.285 Sum_probs=163.1
Q ss_pred eccCCCc--EEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEE
Q 004468 46 LEGHQGC--VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (751)
Q Consensus 46 L~gH~~~--V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd 123 (751)
..+|.+. ++++.|++ ..|++++.|+.|+|||+.+++....+...|...|.+++|+|+ +.+|++|+.||.|++||
T Consensus 87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iwd 162 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHD--GSFLSVGLGNGLVDIYD 162 (401)
T ss_dssp CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTT--SSEEEEEETTSCEEEEE
T ss_pred CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCC--CCEEEEECCCCeEEEEE
Confidence 3477765 55567764 568889999999999999999888875669999999999998 89999999999999999
Q ss_pred CCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccC
Q 004468 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (751)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (751)
+... +.+..+.+|...|.+++|+ +++|++++.||.|++||++.....
T Consensus 163 ~~~~----------~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~-------------------- 209 (401)
T 4aez_A 163 VESQ----------TKLRTMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQ-------------------- 209 (401)
T ss_dssp TTTC----------CEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCE--------------------
T ss_pred CcCC----------eEEEEecCCCCceEEEEEC---CCEEEEEcCCCCEEEEecccCcce--------------------
Confidence 9864 5578888999999999995 369999999999999999854311
Q ss_pred ceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceE
Q 004468 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (751)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt 283 (751)
+.....|...|.+++|+| ++.+|++|+.|+.|++||+++.+.+..+ .+|.. .|+
T Consensus 210 ----~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~--------------------~~~~~-~v~ 263 (401)
T 4aez_A 210 ----IGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTK--------------------TNHNA-AVK 263 (401)
T ss_dssp ----EEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEE--------------------CCCSS-CCC
T ss_pred ----eeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEe--------------------cCCcc-eEE
Confidence 111123677899999999 5899999999999999999875533221 12333 599
Q ss_pred EEEEcCCCCEEEEE-e--CCCcEEEEECCCC
Q 004468 284 HVTFSPNGEEVLLS-Y--SGEHVYLMDVNHA 311 (751)
Q Consensus 284 ~v~fspdg~~Ll~~-s--~d~~I~lwdl~~~ 311 (751)
+++|+|++..+++. + .|+.|++||+.++
T Consensus 264 ~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~ 294 (401)
T 4aez_A 264 AVAWCPWQSNLLATGGGTMDKQIHFWNAATG 294 (401)
T ss_dssp EEEECTTSTTEEEEECCTTTCEEEEEETTTC
T ss_pred EEEECCCCCCEEEEecCCCCCEEEEEECCCC
Confidence 99999988655554 3 5999999998773
No 61
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=2.2e-30 Score=275.57 Aligned_cols=236 Identities=13% Similarity=0.127 Sum_probs=180.3
Q ss_pred cEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC----eEEEEecccCCcceEEEEEecCCCCcEEEEEECCCc
Q 004468 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (751)
Q Consensus 43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~----~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~ 118 (751)
.+.+.+|++.|++|+|+|+|++||+|+.||.|+|||+.++ +.+..+ .+|...|.+++|+|..++.+|++|+.|+.
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSW-RAHDSSIVAIDWASPEYGRIIASASYDKT 82 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEE-ECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceeccee-ccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence 4567899999999999999999999999999999999866 455566 78999999999999422789999999999
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCC-CCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004468 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (751)
Q Consensus 119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l 197 (751)
|++||+........ ....+++..+..|...|.+++|+|+. +.+|++++.||+|++||+++++....... ....
T Consensus 83 v~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----~~~~ 156 (351)
T 3f3f_A 83 VKLWEEDPDQEECS-GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTL-----TSEM 156 (351)
T ss_dssp EEEEEECTTSCTTS-SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEE-----EEEE
T ss_pred EEEEecCCCccccc-ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccc-----cccc
Confidence 99999986532110 11113467788999999999999942 78999999999999999998774421110 0000
Q ss_pred EecccCceecccCCCCCccceEEEEEeCC--CCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccC
Q 004468 198 LDLRCGAKRSLADPPKQTLSLKSCDISST--RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (751)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~--~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (751)
. ........+...+.+++|+|+ ++.++++++.|+.+.+|+....+.. ....+ .
T Consensus 157 ~-------~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~-------~ 211 (351)
T 3f3f_A 157 K-------VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH-----------VAAKL-------P 211 (351)
T ss_dssp E-------SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE-----------EEEEC-------C
T ss_pred c-------ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee-----------eeeec-------C
Confidence 0 001112246678999999995 4789999999999988887654321 01111 2
Q ss_pred CccccceEEEEEcCCC----CEEEEEeCCCcEEEEECCCC
Q 004468 276 GRSSLHLTHVTFSPNG----EEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 276 g~~~~~vt~v~fspdg----~~Ll~~s~d~~I~lwdl~~~ 311 (751)
+|.. .|++++|+|++ ++|++++.|+.|++||+..+
T Consensus 212 ~h~~-~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 212 GHKS-LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp CCCS-CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred CCCc-ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence 3443 69999999998 89999999999999999874
No 62
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.98 E-value=2.7e-30 Score=283.24 Aligned_cols=217 Identities=20% Similarity=0.335 Sum_probs=167.5
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCC
Q 004468 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 131 (751)
Q Consensus 52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~ 131 (751)
.|++++|+|+|++||+|+.|++|+|||+.+++.+..+ .+|...|.+++|+|+ +.+|++|+.|++|++||+.++
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~p~--~~~l~s~s~d~~v~iwd~~~~---- 197 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL-QGHEQDIYSLDYFPS--GDKLVSGSGDRTVRIWDLRTG---- 197 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTT----
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE-ccCCCCEEEEEEcCC--CCEEEEecCCCcEEEEECCCC----
Confidence 4999999999999999999999999999999998888 899999999999999 799999999999999999864
Q ss_pred CCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCC
Q 004468 132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 211 (751)
Q Consensus 132 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 211 (751)
++...+. +...|.+++|+|.++.+|++|+.||+|++||++++.... .+ .. .....
T Consensus 198 ------~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~-----------~~---~~----~~~~~ 252 (393)
T 1erj_A 198 ------QCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE-----------RL---DS----ENESG 252 (393)
T ss_dssp ------EEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEE-----------EE---C----------
T ss_pred ------eeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE-----------ee---cc----cccCC
Confidence 3344443 677899999999778999999999999999998865220 00 00 00112
Q ss_pred CCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCC
Q 004468 212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG 291 (751)
Q Consensus 212 ~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg 291 (751)
.+|...|.+++|+| ++.+|++|+.|+.|++||+++......... .....|...+ .+|.. .|++++|+|++
T Consensus 253 ~~h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~-~~~~~~~~~~-------~~h~~-~v~~~~~~~~~ 322 (393)
T 1erj_A 253 TGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKT-PNSGTCEVTY-------IGHKD-FVLSVATTQND 322 (393)
T ss_dssp CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC----------------CEEEEE-------ECCSS-CEEEEEECGGG
T ss_pred CCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCCcccccC-CCCCcceEEE-------ecccC-cEEEEEECCCC
Confidence 34778899999999 479999999999999999987543221100 0011122222 34554 59999999999
Q ss_pred CEEEEEeCCCcEEEEECCC
Q 004468 292 EEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 292 ~~Ll~~s~d~~I~lwdl~~ 310 (751)
.+|++++.|+.|++||+.+
T Consensus 323 ~~l~sgs~D~~v~iwd~~~ 341 (393)
T 1erj_A 323 EYILSGSKDRGVLFWDKKS 341 (393)
T ss_dssp CEEEEEETTSEEEEEETTT
T ss_pred CEEEEEeCCCeEEEEECCC
Confidence 9999999999999999876
No 63
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.98 E-value=3.8e-30 Score=284.55 Aligned_cols=201 Identities=19% Similarity=0.301 Sum_probs=158.3
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCC
Q 004468 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (751)
Q Consensus 52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~-~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~ 130 (751)
.++.|+||++ ++||+|. |++|+|||+.+++++..+. .+|...|++|+|+|+ |++|++|+.|++|+|||+.++
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspd--g~~lasgs~Dg~v~iWd~~~~--- 179 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE--GNYLAVGTSSAEVQLWDVQQQ--- 179 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT--SSEEEEEETTSCEEEEETTTT---
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCC--CCEEEEEECCCeEEEEEcCCC---
Confidence 3678999975 5788775 8999999999998877652 468889999999999 899999999999999999864
Q ss_pred CCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccC
Q 004468 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 210 (751)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 210 (751)
+++..+.+|...|.+++++ +.+|++|+.|+++++||.+..... +..
T Consensus 180 -------~~~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~------------------------~~~ 225 (420)
T 4gga_A 180 -------KRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHH------------------------VAT 225 (420)
T ss_dssp -------EEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCE------------------------EEE
T ss_pred -------cEEEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeeccccee------------------------eEE
Confidence 5688899999999998885 479999999999999998875421 111
Q ss_pred CCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCC
Q 004468 211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN 290 (751)
Q Consensus 211 ~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspd 290 (751)
...|...+..+.++|. +.++++++.|+.|++||....+..... +..+ ..|.. .|.+++|+|+
T Consensus 226 ~~~h~~~~~~~~~~~~-g~~l~s~~~D~~v~i~~~~~~~~~~~~---------~~~~-------~~~~~-~V~~~~~~p~ 287 (420)
T 4gga_A 226 LSGHSQEVCGLRWAPD-GRHLASGGNDNLVNVWPSAPGEGGWVP---------LQTF-------TQHQG-AVKAVAWCPW 287 (420)
T ss_dssp EECCSSCEEEEEECTT-SSEEEEEETTSCEEEEESSCCSSCSCC---------SEEE-------CCCSS-CEEEEEECTT
T ss_pred ecccccceeeeeecCC-CCeeeeeeccccceEEeecccccccee---------eeee-------cccCC-ceeeeeeCCC
Confidence 2236678999999994 799999999999999999876432110 1111 12333 5999999997
Q ss_pred CCEE-EEE--eCCCcEEEEECCCC
Q 004468 291 GEEV-LLS--YSGEHVYLMDVNHA 311 (751)
Q Consensus 291 g~~L-l~~--s~d~~I~lwdl~~~ 311 (751)
+..+ +++ +.|++|+|||+.++
T Consensus 288 ~~~~la~~~gs~D~~I~iwd~~t~ 311 (420)
T 4gga_A 288 QSNVLATGGGTSDRHIRIWNVCSG 311 (420)
T ss_dssp CTTEEEEEECTTTCEEEEEETTTT
T ss_pred cccEEEEEeecCCCEEEEEeCCcc
Confidence 7644 443 35899999998873
No 64
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.98 E-value=1.9e-30 Score=277.15 Aligned_cols=205 Identities=15% Similarity=0.151 Sum_probs=167.8
Q ss_pred cEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe---EEEEecccCCcceEEEEEecCCCCc-EEEEEECCCc
Q 004468 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAE 118 (751)
Q Consensus 43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~---~~~~l~~~h~~~V~~v~fsp~s~~~-~l~sgs~Dg~ 118 (751)
.....+|.+.|++++|+|++++|++|+.|+.|+||++.++. ....+ .+|...|.+++|+|+ +. +|++|+.|+.
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~~l~~~~~dg~ 80 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFIDN--TDLQIYVGTVQGE 80 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEES--SSEEEEEEETTSC
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECCC--CCcEEEEEcCCCe
Confidence 44457899999999999999999999999999999998776 33444 589999999999999 79 9999999999
Q ss_pred EEEEEC-CCCCCCCCCCCCCCCceeecc--cCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC---------CCCCCCC
Q 004468 119 VRLFNL-SRFSGRGLDDNAITPSALYQC--HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ---------GSSCPPA 186 (751)
Q Consensus 119 V~vwd~-~~~~~~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~---------~~~~~~~ 186 (751)
|++||+ ... ....+.+ |...|.+++|+| +.+|++++.||+|++||+++ .+..
T Consensus 81 i~~wd~~~~~-----------~~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--- 144 (342)
T 1yfq_A 81 ILKVDLIGSP-----------SFQALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS--- 144 (342)
T ss_dssp EEEECSSSSS-----------SEEECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCS---
T ss_pred EEEEEeccCC-----------ceEeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCee---
Confidence 999999 753 2467788 999999999999 57899999999999999986 3311
Q ss_pred CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC-CCCccccCCCCCCCCccc
Q 004468 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVN 265 (751)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~-~~~~~~~~~~~~~~~~~~ 265 (751)
.... +...|.+++|+|+ . +++++.|+.|++||+++ ......
T Consensus 145 ----------------------~~~~-~~~~v~~~~~~~~-~--l~~~~~d~~i~i~d~~~~~~~~~~------------ 186 (342)
T 1yfq_A 145 ----------------------NNTK-VKNKIFTMDTNSS-R--LIVGMNNSQVQWFRLPLCEDDNGT------------ 186 (342)
T ss_dssp ----------------------SSSS-SCCCEEEEEECSS-E--EEEEESTTEEEEEESSCCTTCCCE------------
T ss_pred ----------------------eEEe-eCCceEEEEecCC-c--EEEEeCCCeEEEEECCccccccce------------
Confidence 1111 5678999999984 2 99999999999999987 432100
Q ss_pred cccccccccCCccccceEEEEEcC-CCCEEEEEeCCCcEEEEECCCC
Q 004468 266 YFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 266 ~~~~~~~~~~g~~~~~vt~v~fsp-dg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
.. ...+. ..|++++|+| ++++|++++.|+.|+||++...
T Consensus 187 ~~------~~~~~-~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 187 IE------ESGLK-YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp EE------ECSCS-SCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred ee------ecCCC-CceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 00 01122 2599999999 9999999999999999998873
No 65
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.98 E-value=1.5e-30 Score=311.94 Aligned_cols=251 Identities=16% Similarity=0.195 Sum_probs=208.3
Q ss_pred ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004468 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~ 106 (751)
+..+++|+. .+.+.+.++.+|.+.|++++|+|+|++||+|+.||.|+|||+.+++.+..+ .+|.+.|.+++|+|+
T Consensus 34 ~g~v~iwd~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~v~~~~~s~~-- 108 (814)
T 3mkq_A 34 SGRVEIWNY--ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPT-- 108 (814)
T ss_dssp TSEEEEEET--TTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSS--
T ss_pred CCEEEEEEC--CCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCEEEEEEeCC--
Confidence 566777763 456678899999999999999999999999999999999999999999988 899999999999999
Q ss_pred CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004468 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (751)
Q Consensus 107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~ 186 (751)
+.+|++|+.|++|++||+.... .....+.+|...|.+++|+|.++..|++++.||+|++||++++...
T Consensus 109 ~~~l~~~~~dg~i~vw~~~~~~---------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~--- 176 (814)
T 3mkq_A 109 KPYVLSGSDDLTVKLWNWENNW---------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN--- 176 (814)
T ss_dssp SSEEEEEETTSEEEEEEGGGTS---------EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS---
T ss_pred CCEEEEEcCCCEEEEEECCCCc---------eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce---
Confidence 7999999999999999998531 3467788999999999999966789999999999999999876532
Q ss_pred CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCC-CCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccc
Q 004468 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST-RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (751)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~ 265 (751)
..+. ..+...+.+++|+|. ++.+|++|+.|+.|++||+++.+.+..+
T Consensus 177 --------~~~~-------------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----------- 224 (814)
T 3mkq_A 177 --------FTLT-------------TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL----------- 224 (814)
T ss_dssp --------EEEE-------------CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE-----------
T ss_pred --------eEEe-------------cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE-----------
Confidence 1110 113367889999982 3689999999999999999875433221
Q ss_pred cccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCc
Q 004468 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL 336 (751)
Q Consensus 266 ~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 336 (751)
.+|.. .|++++|+|+|++|++++.|+.|++||+.++........+...+..++|+|+...+
T Consensus 225 ---------~~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 285 (814)
T 3mkq_A 225 ---------EGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKN 285 (814)
T ss_dssp ---------ECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGG
T ss_pred ---------cCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCce
Confidence 22333 59999999999999999999999999999976666566666788889999987643
No 66
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.98 E-value=1.3e-31 Score=295.29 Aligned_cols=219 Identities=14% Similarity=0.130 Sum_probs=165.7
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCC
Q 004468 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 131 (751)
Q Consensus 52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~ 131 (751)
.+++++|+|+|++|++|+.|+.|++||+.+++....+ ..| ..+....|+|+ +++|++|+.|+.|+|||+...
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~-~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~---- 129 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKML-KRA-DYTAVDTAKLQ--MRRFILGTTEGDIKVLDSNFN---- 129 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTS-CSC-CEEEEEEECSS--SCEEEEEETTSCEEEECTTSC----
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEE-ecC-CceEEEEEecC--CCEEEEEECCCCEEEEeCCCc----
Confidence 3458999999999999999999999999887766555 455 44555567888 799999999999999999854
Q ss_pred CCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCC
Q 004468 132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 211 (751)
Q Consensus 132 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 211 (751)
.+...+.+|...|++++|+| ++.+|++|+.||+|++||+++++.. .. .
T Consensus 130 ------~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~-----------~~--------------~ 177 (420)
T 3vl1_A 130 ------LQREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNP-----------RT--------------L 177 (420)
T ss_dssp ------EEEEETTSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCCC-----------EE--------------E
T ss_pred ------ceeeecccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcCc-----------eE--------------E
Confidence 44667789999999999999 6789999999999999999987532 11 1
Q ss_pred CCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccc--cccc-ccCCccccceEEEEEc
Q 004468 212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC--PMHL-SEHGRSSLHLTHVTFS 288 (751)
Q Consensus 212 ~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~g~~~~~vt~v~fs 288 (751)
..|...|.+++|+|+ +.+|++++.|+.|++||+++.+.+..+.........+.... +... .........+++++|+
T Consensus 178 ~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s 256 (420)
T 3vl1_A 178 IGHRATVTDIAIIDR-GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG 256 (420)
T ss_dssp ECCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS
T ss_pred cCCCCcEEEEEEcCC-CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc
Confidence 236788999999994 78999999999999999998776554432211111111000 0000 0000011247778889
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC
Q 004468 289 PNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 289 pdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
|+|++|++++.|+.|++||+.++
T Consensus 257 ~~~~~l~~~~~dg~i~i~d~~~~ 279 (420)
T 3vl1_A 257 TYGKYVIAGHVSGVITVHNVFSK 279 (420)
T ss_dssp CTTEEEEEEETTSCEEEEETTTC
T ss_pred CCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999999999999998773
No 67
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.98 E-value=6.9e-30 Score=269.64 Aligned_cols=199 Identities=19% Similarity=0.275 Sum_probs=155.9
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCC
Q 004468 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 131 (751)
Q Consensus 53 V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~-~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~ 131 (751)
+++|+||+++ +||+|. |++|+|||+.+++++..+. .+|...|.+++|+|+ +++|++|+.|++|+|||+.++
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~--~~~l~sgs~Dg~v~iw~~~~~---- 99 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE--GNYLAVGTSSAEVQLWDVQQQ---- 99 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT--SSEEEEEETTSEEEEEETTTT----
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCC--CCEEEEEECCCcEEEeecCCc----
Confidence 5789999886 777764 8999999999999887762 468889999999999 899999999999999999975
Q ss_pred CCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCC
Q 004468 132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 211 (751)
Q Consensus 132 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 211 (751)
+++..+.+|...+.++.+. +.++++++.++.+++|+....... +...
T Consensus 100 ------~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~------------------------~~~~ 146 (318)
T 4ggc_A 100 ------KRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHH------------------------VATL 146 (318)
T ss_dssp ------EEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCE------------------------EEEE
T ss_pred ------eeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCcee------------------------EEEE
Confidence 5678899999998877664 478999999999999998775421 1112
Q ss_pred CCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCC
Q 004468 212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG 291 (751)
Q Consensus 212 ~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg 291 (751)
..|...+..+.+++. +.++++++.|+.|++||+++.+...... .. ...+. ..|..++++|++
T Consensus 147 ~~~~~~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------~~-------~~~~~-~~v~~~~~~~~~ 208 (318)
T 4ggc_A 147 SGHSQEVCGLRWAPD-GRHLASGGNDNLVNVWPSAPGEGGWVPL---------QT-------FTQHQ-GAVKAVAWCPWQ 208 (318)
T ss_dssp ECCSSCEEEEEECTT-SSEEEEEETTSCEEEEESSCBTTBSCCS---------EE-------ECCCC-SCEEEEEECTTS
T ss_pred cCccCceEEEEEcCC-CCEEEEEecCcceeEEECCCCcccccce---------ee-------ecccC-CceEEEEecCCC
Confidence 236678899999994 7899999999999999998765322110 00 01122 259999999987
Q ss_pred CEEE---EEeCCCcEEEEECCC
Q 004468 292 EEVL---LSYSGEHVYLMDVNH 310 (751)
Q Consensus 292 ~~Ll---~~s~d~~I~lwdl~~ 310 (751)
..++ +++.++.|++||...
T Consensus 209 ~~~~~~~~~~~~~~i~lwd~~~ 230 (318)
T 4ggc_A 209 SNVLATGGGTSDRHIRIWNVCS 230 (318)
T ss_dssp TTEEEEEECTTTCEEEEEETTT
T ss_pred CcEEEEEecCCCCEEEEEeccc
Confidence 6544 445689999999776
No 68
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.98 E-value=3e-30 Score=277.29 Aligned_cols=227 Identities=17% Similarity=0.234 Sum_probs=177.6
Q ss_pred ccccccccchhhhc-----cccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEE
Q 004468 25 DVNHSLQMHSSLVR-----RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT 99 (751)
Q Consensus 25 ~~~~~l~~~~~~i~-----~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v 99 (751)
..+..+++|+.... ...+...|.+|.+.|++++|+|++.+|+||+.|++|+|||+.+++.+..+ .+|...|.++
T Consensus 46 s~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~v 124 (343)
T 2xzm_R 46 SRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRF-VGHQSEVYSV 124 (343)
T ss_dssp ETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEE-ECCCSCEEEE
T ss_pred cCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEE-cCCCCcEEEE
Confidence 34678888875432 23456789999999999999999999999999999999999999999888 8999999999
Q ss_pred EEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCC---------CCEEEEEeCCC
Q 004468 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN---------PHVVWSASEDG 170 (751)
Q Consensus 100 ~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~---------~~~l~s~s~Dg 170 (751)
+|+|+ +++|++|+.|++|++||+..... ........|...|.+++|+|.. +.+|++++.||
T Consensus 125 ~~sp~--~~~l~s~~~d~~i~~wd~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 194 (343)
T 2xzm_R 125 AFSPD--NRQILSAGAEREIKLWNILGECK--------FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG 194 (343)
T ss_dssp EECSS--TTEEEEEETTSCEEEEESSSCEE--------EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTS
T ss_pred EECCC--CCEEEEEcCCCEEEEEeccCCce--------eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCC
Confidence 99999 89999999999999999973210 0112234799999999999954 26899999999
Q ss_pred cEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC
Q 004468 171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 250 (751)
Q Consensus 171 ~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~ 250 (751)
+|++||..... .. ....|...|.+++|+| ++.+|++|+.|+.|++||++....
T Consensus 195 ~i~iwd~~~~~---------------~~-----------~~~~h~~~v~~~~~s~-~g~~l~sgs~dg~v~iwd~~~~~~ 247 (343)
T 2xzm_R 195 RLKVWNTNFQI---------------RY-----------TFKAHESNVNHLSISP-NGKYIATGGKDKKLLIWDILNLTY 247 (343)
T ss_dssp EEEEEETTTEE---------------EE-----------EEECCSSCEEEEEECT-TSSEEEEEETTCEEEEEESSCCSS
T ss_pred EEEEEcCCCce---------------eE-----------EEcCccccceEEEECC-CCCEEEEEcCCCeEEEEECCCCcc
Confidence 99999943210 10 1123667899999999 589999999999999999954321
Q ss_pred ccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468 251 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
. ...+ . + ...|++++|+|++.+|+ ++.|+.|++||+.+.
T Consensus 248 ~------------~~~~------~--~-~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 248 P------------QREF------D--A-GSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQ 286 (343)
T ss_dssp C------------SEEE------E--C-SSCEEEEEECSSSCEEE-EEESSCEEEEESSSC
T ss_pred c------------ceee------c--C-CCcEEEEEECCCCCEEE-EECCCCEEEEEeCCC
Confidence 1 1111 0 1 11499999999998765 456888999999873
No 69
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-30 Score=287.12 Aligned_cols=265 Identities=15% Similarity=0.215 Sum_probs=203.3
Q ss_pred ccccccccchhhhccc-cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC----CeEEEEecccCCcceEEE
Q 004468 25 DVNHSLQMHSSLVRRL-SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS----RKLLHSIETGHSANVFCT 99 (751)
Q Consensus 25 ~~~~~l~~~~~~i~~~-~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~----~~~~~~l~~~h~~~V~~v 99 (751)
..+..+++|+...... +++..+ .|.+.|++++|+|++++||+|+.||.|+|||+.+ .+.+..+ .+|...|.++
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~-~~h~~~v~~~ 119 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARF-SNHSSSVKTV 119 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEEC-CCSSSCCCEE
T ss_pred CCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhc-cCCccceEEE
Confidence 3466788887544332 244444 5999999999999999999999999999999987 3466667 7999999999
Q ss_pred EEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 004468 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (751)
Q Consensus 100 ~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~ 179 (751)
+|+|+. +.+|++|+.|+.|++||+........ ......+..+..|...|.+++|+|+++.+|++++.||.|++||+++
T Consensus 120 ~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 197 (416)
T 2pm9_A 120 KFNAKQ-DNVLASGGNNGEIFIWDMNKCTESPS-NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA 197 (416)
T ss_dssp EECSSS-TTBEEEECSSSCEEBCBTTTTSSCTT-TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT
T ss_pred EEcCCC-CCEEEEEcCCCeEEEEECCCCccccc-cccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC
Confidence 999984 68999999999999999986531100 0000112345679999999999996589999999999999999988
Q ss_pred CCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC---eEEEEeCCCCC-CccccC
Q 004468 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLP-PLTSCQ 255 (751)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~---~IriwD~~~~~-~~~~~~ 255 (751)
++.. ..+... ....++...|.+++|+|++..++++++.|+ .|++||+++.. ++..
T Consensus 198 ~~~~--------------~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~-- 256 (416)
T 2pm9_A 198 KKEV--------------IHLSYT-----SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQT-- 256 (416)
T ss_dssp TEEE--------------EEECCC-----CCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBC--
T ss_pred CCcc--------------eEEecc-----ccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEE--
Confidence 6521 110000 001123678999999997668999999999 99999999753 2211
Q ss_pred CCCCCCCccccccccccccC-CccccceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCC
Q 004468 256 KRMSPPPCVNYFCPMHLSEH-GRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (751)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~-g~~~~~vt~v~fsp-dg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~ 333 (751)
+ . +|.. .|++++|+| ++++|++++.|+.|++||+.++........+...+..++|+|+.
T Consensus 257 -----------~-------~~~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~ 317 (416)
T 2pm9_A 257 -----------L-------NQGHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEA 317 (416)
T ss_dssp -----------C-------CSCCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTC
T ss_pred -----------e-------ecCccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCC
Confidence 1 1 3433 599999999 99999999999999999999977666666677788889999976
No 70
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.8e-30 Score=279.36 Aligned_cols=222 Identities=15% Similarity=0.237 Sum_probs=179.2
Q ss_pred cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC--CCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCc
Q 004468 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (751)
Q Consensus 41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~--~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~ 118 (751)
+++.+|++|.+.|++++|+|+|++||+|+.||.|+|||+. +++.+..+ .+|...|.+++|+|+.++.+|++|+.|+.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 4567899999999999999999999999999999999997 55666777 79999999999987644689999999999
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCC-CCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004468 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (751)
Q Consensus 119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l 197 (751)
|+|||+..+.. ..+..+..|...|.+++|+|++ +.+|++++.||+|++||++...... ..
T Consensus 81 v~iwd~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~----------~~- 141 (379)
T 3jrp_A 81 VLIWKEENGRW--------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS----------PI- 141 (379)
T ss_dssp EEEEEEETTEE--------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCC----------EE-
T ss_pred EEEEEcCCCce--------eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCcee----------eE-
Confidence 99999986421 2567788899999999999942 7899999999999999998864220 00
Q ss_pred EecccCceecccCCCCCccceEEEEEeCC------------CCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccc
Q 004468 198 LDLRCGAKRSLADPPKQTLSLKSCDISST------------RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (751)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~------------~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~ 265 (751)
....+...|.+++|+|. ++.+|++|+.|+.|++||++....... +..
T Consensus 142 ------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---------~~~ 200 (379)
T 3jrp_A 142 ------------IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV---------LES 200 (379)
T ss_dssp ------------EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEE---------EEE
T ss_pred ------------EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCccee---------eEE
Confidence 11235678999999995 478999999999999999986542211 011
Q ss_pred cccccccccCCccccceEEEEEcCC---CCEEEEEeCCCcEEEEECCCC
Q 004468 266 YFCPMHLSEHGRSSLHLTHVTFSPN---GEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 266 ~~~~~~~~~~g~~~~~vt~v~fspd---g~~Ll~~s~d~~I~lwdl~~~ 311 (751)
.+ .+|.. .|++++|+|+ +++|++++.|+.|+|||+.++
T Consensus 201 ~~-------~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 201 TL-------EGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp EE-------CCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred EE-------ecccC-cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 11 23443 6999999999 899999999999999998873
No 71
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=2.5e-30 Score=272.02 Aligned_cols=252 Identities=15% Similarity=0.208 Sum_probs=194.0
Q ss_pred cEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC--CeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEE
Q 004468 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (751)
Q Consensus 43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~--~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~ 120 (751)
+..+.+|.+.|++++|+|+|++||||+.|++|+|||+.. .+.+.++ .+|.+.|.+++|+|...+++|+||+.|++|+
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 456889999999999999999999999999999999874 3566777 8999999999998642268999999999999
Q ss_pred EEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCC-CCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (751)
Q Consensus 121 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (751)
|||+..+.. ..+..+.+|...|.+++|+|+. +.+|++++.||+|++||++...... ...
T Consensus 81 iWd~~~~~~--------~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~----------~~~-- 140 (297)
T 2pm7_B 81 IWKEENGRW--------SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS----------PII-- 140 (297)
T ss_dssp EEEBSSSCB--------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC----------CEE--
T ss_pred EEEcCCCce--------EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee----------eee--
Confidence 999985421 3466788899999999999942 6899999999999999998753110 001
Q ss_pred cccCceecccCCCCCccceEEEEEeCCC------------CcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccc
Q 004468 200 LRCGAKRSLADPPKQTLSLKSCDISSTR------------PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF 267 (751)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~------------~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~ 267 (751)
...|...|.+++|+|.. +.+|++|+.|+.|+|||+++...... +...+
T Consensus 141 -----------~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~---------~~~~l 200 (297)
T 2pm7_B 141 -----------IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV---------LESTL 200 (297)
T ss_dssp -----------EECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEE---------EEEEE
T ss_pred -----------eecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEE---------EEEEe
Confidence 12366789999999952 46999999999999999986532110 01111
Q ss_pred cccccccCCccccceEEEEEcCCC---CEEEEEeCCCcEEEEECCCCCcc--eee---eecCCCceeEEeCCCCCCcccC
Q 004468 268 CPMHLSEHGRSSLHLTHVTFSPNG---EEVLLSYSGEHVYLMDVNHAGGR--AMR---YTVGDASKIMSFTPTLNGLELQ 339 (751)
Q Consensus 268 ~~~~~~~~g~~~~~vt~v~fspdg---~~Ll~~s~d~~I~lwdl~~~~~~--~~~---~~~~~~~~~~~~sp~~~~~~~~ 339 (751)
.+|.. .|++++|+|++ .+|++++.|+.|+|||+.+.... ... ..+...+..++|+|+.+.++..
T Consensus 201 -------~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~ 272 (297)
T 2pm7_B 201 -------EGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS 272 (297)
T ss_dssp -------CCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred -------cCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEE
Confidence 34554 69999999995 89999999999999999874321 111 2334567788999988776655
Q ss_pred CCcc
Q 004468 340 PPIH 343 (751)
Q Consensus 340 ~~~~ 343 (751)
..+.
T Consensus 273 ~~D~ 276 (297)
T 2pm7_B 273 GGDN 276 (297)
T ss_dssp ETTS
T ss_pred cCCC
Confidence 4433
No 72
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=5.1e-31 Score=280.02 Aligned_cols=175 Identities=13% Similarity=0.073 Sum_probs=126.2
Q ss_pred EEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecC-CCCEE
Q 004468 85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVV 163 (751)
Q Consensus 85 ~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~~l 163 (751)
+..+..+|.+.|.+++|+|+ +++|+||+.|++|+|||+..+.. .++..+.+|...|.+++|+|. ++.+|
T Consensus 5 ~~~~~~~H~~~V~~v~~s~~--g~~lasgs~D~~v~lwd~~~~~~--------~~~~~l~gH~~~V~~v~~~~~~~~~~l 74 (316)
T 3bg1_A 5 INTVDTSHEDMIHDAQMDYY--GTRLATCSSDRSVKIFDVRNGGQ--------ILIADLRGHEGPVWQVAWAHPMYGNIL 74 (316)
T ss_dssp ---------CCEEEEEECGG--GCEEEEEETTTEEEEEEEETTEE--------EEEEEEECCSSCEEEEEECCGGGSSCE
T ss_pred eeeecccccCeEEEeeEcCC--CCEEEEEeCCCeEEEEEecCCCc--------EEEEEEcCCCccEEEEEeCCCCCCCEE
Confidence 33444799999999999999 89999999999999999975321 236778999999999999853 46899
Q ss_pred EEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC-CcEEEEEeCCCeEEE
Q 004468 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARL 242 (751)
Q Consensus 164 ~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~sgs~D~~Iri 242 (751)
+||+.|++|++||++++... . +.....|...|++++|+|++ +.+|++|+.|+.|++
T Consensus 75 ~s~s~D~~v~iWd~~~~~~~------------~-----------~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~l 131 (316)
T 3bg1_A 75 ASCSYDRKVIIWREENGTWE------------K-----------SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL 131 (316)
T ss_dssp EEEETTSCEEEECCSSSCCC------------E-----------EEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEE
T ss_pred EEEECCCEEEEEECCCCcce------------E-----------EEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEE
Confidence 99999999999999875311 0 11123467789999999963 689999999999999
Q ss_pred EeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCC-----------------CCEEEEEeCCCcEEE
Q 004468 243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-----------------GEEVLLSYSGEHVYL 305 (751)
Q Consensus 243 wD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspd-----------------g~~Ll~~s~d~~I~l 305 (751)
||++....... ...+ .+|.. .|++++|+|+ +++|++++.|+.|+|
T Consensus 132 wd~~~~~~~~~----------~~~~-------~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~l 193 (316)
T 3bg1_A 132 LTYTGEGQWEV----------KKIN-------NAHTI-GCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKL 193 (316)
T ss_dssp EEECSSSCEEE----------CCBT-------TSSSS-CBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCE
T ss_pred EecCCCCCcce----------eeee-------ccccC-CcceEEEccccCCccccccccccCccccceEEEecCCCeEEE
Confidence 99986421100 0000 23433 5888999997 357777778888888
Q ss_pred EECCC
Q 004468 306 MDVNH 310 (751)
Q Consensus 306 wdl~~ 310 (751)
||+..
T Consensus 194 Wd~~~ 198 (316)
T 3bg1_A 194 WKEEE 198 (316)
T ss_dssp EEECT
T ss_pred EEeCC
Confidence 87643
No 73
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=4.5e-30 Score=278.62 Aligned_cols=207 Identities=9% Similarity=0.078 Sum_probs=138.4
Q ss_pred CCcEEEEEECCCCCEEEEEeCCC-------cEEEEeCCCCeE----------EEEecccCCcceEEEEEecCCCCcEEEE
Q 004468 50 QGCVNAISWNSKGSLLISGSDDT-------HINVWSYSSRKL----------LHSIETGHSANVFCTKFVPETSDELVVS 112 (751)
Q Consensus 50 ~~~V~~l~~s~dg~~LaSgs~Dg-------~I~IWd~~~~~~----------~~~l~~~h~~~V~~v~fsp~s~~~~l~s 112 (751)
.-+|++++|+|||++||+||.|. .|+||++..... ...+ .+|...|.++++.+ ..+++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l-~~~~~~v~s~~~~~----~~~~~ 88 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFAL-EDNDDSPTAIDASK----GIILV 88 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEEC-CTTSCCCCEEEEET----TEEEE
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEc-cCCCCceEEEEeCC----CEEEE
Confidence 45899999999999999998654 499999865421 1233 67888999988764 35555
Q ss_pred E-----------ECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEE--EEeCCCcEEEEecCC
Q 004468 113 G-----------AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW--SASEDGTLRQHDFRQ 179 (751)
Q Consensus 113 g-----------s~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~--s~s~Dg~I~iwDlr~ 179 (751)
| +.|+.+++|++....+.... ...........+...|+.++|+| ++++++ +++.|++|++||+++
T Consensus 89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~ 166 (365)
T 4h5i_A 89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEF-LTSVDFDASTNADDYTKLVYISR-EGTVAAIASSKVPAIMRIIDPSD 166 (365)
T ss_dssp ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEE-EEEECSSCCCCTTCCEEEEEECT-TSSCEEEEESCSSCEEEEEETTT
T ss_pred EECCCccEEEEecCCCcEEEEEecCCCceEEE-eeeeceeecCCcccCEEEEEEcC-CCCEEEEEECCCCCEEEEeECCC
Confidence 5 45788999998754321100 00000111234556799999999 556654 455799999999988
Q ss_pred CCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCC
Q 004468 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS 259 (751)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~ 259 (751)
++.. ..+ .+...|++++|+| ++.++++++.| .+++|+..+...+...
T Consensus 167 ~~~~--------------~~~------------~~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~~~~~----- 213 (365)
T 4h5i_A 167 LTEK--------------FEI------------ETRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSCIARK----- 213 (365)
T ss_dssp TEEE--------------EEE------------ECSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCEEEEE-----
T ss_pred CcEE--------------EEe------------CCCCceEEEEEcc-CCceEEeccce-eEEEEEeccCcceeee-----
Confidence 6521 111 1445799999999 57899998855 4666666554322110
Q ss_pred CCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCC----cEEEEECCC
Q 004468 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE----HVYLMDVNH 310 (751)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~----~I~lwdl~~ 310 (751)
...+|.. .|++++|+|+|++|++++.|+ .+++|++..
T Consensus 214 -------------~~~~~~~-~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~ 254 (365)
T 4h5i_A 214 -------------TDFDKNW-SLSKINFIADDTVLIAASLKKGKGIVLTKISIKS 254 (365)
T ss_dssp -------------CCCCTTE-EEEEEEEEETTEEEEEEEESSSCCEEEEEEEEET
T ss_pred -------------ecCCCCC-CEEEEEEcCCCCEEEEEecCCcceeEEeeccccc
Confidence 0122333 599999999999999998876 566676544
No 74
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=2.1e-29 Score=278.63 Aligned_cols=227 Identities=16% Similarity=0.245 Sum_probs=184.7
Q ss_pred cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004468 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (751)
Q Consensus 26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s 105 (751)
+++.+++|+....+......+.+|.+.|++|+|+|+|++||+|+.||+|+|||+.+++.+..+ .+|...|.++.|.
T Consensus 123 ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~-~~h~~~v~~~s~~--- 198 (420)
T 4gga_A 123 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWN--- 198 (420)
T ss_dssp ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEE---
T ss_pred eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE-eCCCCceEEEeeC---
Confidence 467888888655444444556688899999999999999999999999999999999999998 8999999999886
Q ss_pred CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004468 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (751)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~ 185 (751)
+.+|++|+.|+.+++||..... ..+..+.+|...+..+.|+| ++.++++++.|+.|++||++.++....
T Consensus 199 -~~~l~sgs~d~~i~~~d~~~~~---------~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~ 267 (420)
T 4gga_A 199 -SYILSSGSRSGHIHHHDVRVAE---------HHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWV 267 (420)
T ss_dssp -TTEEEEEETTSEEEEEETTSSS---------CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSC
T ss_pred -CCEEEEEeCCCceeEeeecccc---------eeeEEecccccceeeeeecC-CCCeeeeeeccccceEEeeccccccce
Confidence 4689999999999999998642 44678899999999999999 678999999999999999988753210
Q ss_pred CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEE--eCCCeEEEEeCCCCCCccccCCCCCCCCc
Q 004468 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG--GSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (751)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sg--s~D~~IriwD~~~~~~~~~~~~~~~~~~~ 263 (751)
.+.....+...|.+++|+|.++.+++++ +.|+.|++||+++++....+
T Consensus 268 ---------------------~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~--------- 317 (420)
T 4gga_A 268 ---------------------PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV--------- 317 (420)
T ss_dssp ---------------------CSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE---------
T ss_pred ---------------------eeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee---------
Confidence 0112233667899999999888888775 47999999999886543221
Q ss_pred cccccccccccCCccccceEEEEEcCCCCEEEEEe--CCCcEEEEECCC
Q 004468 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLMDVNH 310 (751)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s--~d~~I~lwdl~~ 310 (751)
..+. .+.++.|+|++++|++++ .|+.|+|||+.+
T Consensus 318 -----------~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~ 353 (420)
T 4gga_A 318 -----------DAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPT 353 (420)
T ss_dssp -----------ECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred -----------cccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCC
Confidence 1122 489999999999999876 589999999766
No 75
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=9.8e-30 Score=273.61 Aligned_cols=213 Identities=15% Similarity=0.176 Sum_probs=166.2
Q ss_pred hhccccccEEeccCCCcEEEEEECCC---CCEEEEEeCCCcEEEEeCCC-CeEE-EEecccCCcceEEEEEecCCCCcEE
Q 004468 36 LVRRLSQERELEGHQGCVNAISWNSK---GSLLISGSDDTHINVWSYSS-RKLL-HSIETGHSANVFCTKFVPETSDELV 110 (751)
Q Consensus 36 ~i~~~~~~~~L~gH~~~V~~l~~s~d---g~~LaSgs~Dg~I~IWd~~~-~~~~-~~l~~~h~~~V~~v~fsp~s~~~~l 110 (751)
....++.++.+.+|.+.|++|+|+|+ |++||+|+.||.|+|||+.+ +..+ ..+ .+|...|.+++|+|+ +++|
T Consensus 25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l 101 (368)
T 3mmy_A 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQ-QMHTGPVLDVCWSDD--GSKV 101 (368)
T ss_dssp SSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEE-EECSSCEEEEEECTT--SSEE
T ss_pred CCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEe-ccccCCEEEEEECcC--CCEE
Confidence 34566788899999999999999999 69999999999999999987 5555 445 799999999999998 8999
Q ss_pred EEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEE--ecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCC
Q 004468 111 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV--EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS 188 (751)
Q Consensus 111 ~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~--sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~ 188 (751)
++|+.|+.|++||+... + ...+..|...|.+++| +| ++.+|++++.||+|++||+++++..
T Consensus 102 ~s~~~dg~v~iwd~~~~----------~-~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~----- 164 (368)
T 3mmy_A 102 FTASCDKTAKMWDLSSN----------Q-AIQIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPM----- 164 (368)
T ss_dssp EEEETTSEEEEEETTTT----------E-EEEEEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCS-----
T ss_pred EEEcCCCcEEEEEcCCC----------C-ceeeccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEE-----
Confidence 99999999999999864 2 3346679999999999 77 6688999999999999999987632
Q ss_pred CCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccc
Q 004468 189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC 268 (751)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~ 268 (751)
..+ . ....+.++.+.+ ..+++++.|+.+++||++....... ...
T Consensus 165 ------~~~-~--------------~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~------------~~~ 208 (368)
T 3mmy_A 165 ------MVL-Q--------------LPERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFR------------RIE 208 (368)
T ss_dssp ------EEE-E--------------CSSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEE------------ECC
T ss_pred ------EEE-e--------------cCCCceEEEecC---CeeEEEeCCCcEEEEEeccccchhh------------hcc
Confidence 111 0 112466666665 4888999999999999986432111 000
Q ss_pred ccccccCCccccceEEEEEcCCCCE----EEEEeCCCcEEEEECCCC
Q 004468 269 PMHLSEHGRSSLHLTHVTFSPNGEE----VLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 269 ~~~~~~~g~~~~~vt~v~fspdg~~----Ll~~s~d~~I~lwdl~~~ 311 (751)
......+..+.+.+++.. +++++.|+.|++||+...
T Consensus 209 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~ 248 (368)
T 3mmy_A 209 -------SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP 248 (368)
T ss_dssp -------CSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS
T ss_pred -------ccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC
Confidence 001113566666665554 999999999999999873
No 76
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.6e-29 Score=280.87 Aligned_cols=200 Identities=14% Similarity=0.292 Sum_probs=165.3
Q ss_pred cEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004468 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (751)
Q Consensus 43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw 122 (751)
.....+|...|.|++| ++++|++|+.||+|+|||+.+++.+..+ .+|.+.|.+++| + +.+|++|+.||+|++|
T Consensus 126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~--~--~~~l~sg~~dg~i~vw 198 (435)
T 1p22_A 126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCLQY--D--ERVIITGSSDSTVRVW 198 (435)
T ss_dssp EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEE-CCCSSCEEEEEC--C--SSEEEEEETTSCEEEE
T ss_pred EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEE-cCCCCcEEEEEE--C--CCEEEEEcCCCeEEEE
Confidence 3344567788999988 7999999999999999999999999888 899999999999 4 6899999999999999
Q ss_pred ECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004468 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (751)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~ 202 (751)
|+.++ +.+..+.+|...|.+++|++ .++++|+.||+|++||++++... ..
T Consensus 199 d~~~~----------~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~-----------~~------ 248 (435)
T 1p22_A 199 DVNTG----------EMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDI-----------TL------ 248 (435)
T ss_dssp ESSSC----------CEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCC-----------EE------
T ss_pred ECCCC----------cEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCc-----------ee------
Confidence 99865 55788899999999999964 58999999999999999886532 00
Q ss_pred CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccce
Q 004468 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (751)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v 282 (751)
.....+|...|.+++|+ +.++++|+.|+.|++||+++.+.+..+ .+|.. .|
T Consensus 249 -----~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~--------------------~~~~~-~v 299 (435)
T 1p22_A 249 -----RRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTL--------------------NGHKR-GI 299 (435)
T ss_dssp -----EEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTTCCEEEEE--------------------ECCSS-CE
T ss_pred -----eeEecCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCcCcEEEEE--------------------cCCCC-cE
Confidence 01122366789999993 579999999999999999986543322 22333 58
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 283 THVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 283 t~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
+++.| ++++|++++.|+.|++||+.+
T Consensus 300 ~~~~~--~~~~l~~g~~dg~i~iwd~~~ 325 (435)
T 1p22_A 300 ACLQY--RDRLVVSGSSDNTIRLWDIEC 325 (435)
T ss_dssp EEEEE--ETTEEEEEETTSCEEEEETTT
T ss_pred EEEEe--CCCEEEEEeCCCeEEEEECCC
Confidence 89988 578999999999999999877
No 77
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.2e-30 Score=293.34 Aligned_cols=228 Identities=14% Similarity=0.104 Sum_probs=176.8
Q ss_pred cccccccccchhhhccccc--cEEeccCCCcEEEEEECCC------CCEEEEEeCCCcEEEEeCCCCeE-----------
Q 004468 24 PDVNHSLQMHSSLVRRLSQ--ERELEGHQGCVNAISWNSK------GSLLISGSDDTHINVWSYSSRKL----------- 84 (751)
Q Consensus 24 ~~~~~~l~~~~~~i~~~~~--~~~L~gH~~~V~~l~~s~d------g~~LaSgs~Dg~I~IWd~~~~~~----------- 84 (751)
...+..+++|+....++.. ..++.+|.+.|++|+|+|+ +.+||||+.||+|+|||+.++..
T Consensus 179 ~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p 258 (524)
T 2j04_B 179 EKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKP 258 (524)
T ss_dssp ---CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSC
T ss_pred CCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCc
Confidence 4567788899854433322 3567889999999999996 57999999999999999976532
Q ss_pred EEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEE--EEecCCC-C
Q 004468 85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKL--AVEVGNP-H 161 (751)
Q Consensus 85 ~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l--~~sp~~~-~ 161 (751)
...+ .+|...|.+++|+|+ ..|++|+.||+|++||+..+. .+...+.+|...|.+| +|+| ++ +
T Consensus 259 ~~~l-~~h~~~v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~---------~~~~~~~~H~~~V~sv~~~~s~-~g~~ 324 (524)
T 2j04_B 259 SLTL-SLADSLITTFDFLSP---TTVVCGFKNGFVAEFDLTDPE---------VPSFYDQVHDSYILSVSTAYSD-FEDT 324 (524)
T ss_dssp SEEE-CCTTTCEEEEEESSS---SEEEEEETTSEEEEEETTBCS---------SCSEEEECSSSCEEEEEEECCT-TSCC
T ss_pred eEEE-EcCCCCEEEEEecCC---CeEEEEeCCCEEEEEECCCCC---------CceEEeecccccEEEEEEEcCC-CCCe
Confidence 1245 789999999999986 489999999999999998541 3456788999999999 4566 55 8
Q ss_pred EEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEE
Q 004468 162 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR 241 (751)
Q Consensus 162 ~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~Ir 241 (751)
+|+|||.||+|++||+++++.. ..+.... ....|.+++|+|+ +..+++++.|++|+
T Consensus 325 ~laS~S~D~tvklWD~~~~~~~-----------~~~~~~~------------~~~~v~~v~fsp~-~~~l~s~~~d~tv~ 380 (524)
T 2j04_B 325 VVSTVAVDGYFYIFNPKDIATT-----------KTTVSRF------------RGSNLVPVVYCPQ-IYSYIYSDGASSLR 380 (524)
T ss_dssp EEEEEETTSEEEEECGGGHHHH-----------CEEEEEC------------SCCSCCCEEEETT-TTEEEEECSSSEEE
T ss_pred EEEEeccCCeEEEEECCCCCcc-----------ccccccc------------ccCcccceEeCCC-cCeEEEeCCCCcEE
Confidence 9999999999999999876421 1111000 1124788999995 77899999999999
Q ss_pred EEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 242 iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
+||++....+.. + .+|.. .|++|+|+|+|++|++|+.|++|+|||+..
T Consensus 381 lwd~~~~~~~~~-------------l-------~gH~~-~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 381 AVPSRAAFAVHP-------------L-------VSRET-TITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EEETTCTTCCEE-------------E-------EECSS-CEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred EEECccccccee-------------e-------ecCCC-ceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 999987643221 1 23544 699999999999999999999999999765
No 78
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=9.1e-29 Score=276.63 Aligned_cols=229 Identities=19% Similarity=0.229 Sum_probs=183.5
Q ss_pred cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004468 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (751)
Q Consensus 26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s 105 (751)
.+..+++|+ +.+.+++.++.+|.+.|++++|++++ +|++|+.||+|+|||+.+++.+..+ .+|...|.+++|+|..
T Consensus 140 ~dg~i~vwd--~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~ 215 (464)
T 3v7d_B 140 DDKMIRVYD--SINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYK 215 (464)
T ss_dssp TTSCEEEEE--TTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEEESS
T ss_pred CCCcEEEEE--CCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEE-CCCCCccEEEEEecCC
Confidence 356677776 35567889999999999999999988 9999999999999999999999888 7999999999999754
Q ss_pred CCcEEEEEECCCcEEEEECCCCCCCCCCC-------------CCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcE
Q 004468 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDD-------------NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL 172 (751)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~-------------~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I 172 (751)
++.+|++|+.|++|++||+.......... .....+..+.+|...|.++. + ++.++++++.||+|
T Consensus 216 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~i 292 (464)
T 3v7d_B 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNTL 292 (464)
T ss_dssp SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E-ETTEEEEEETTSCE
T ss_pred CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--C-CCCEEEEEeCCCeE
Confidence 47899999999999999998643211000 00012556788999998874 4 56899999999999
Q ss_pred EEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCcc
Q 004468 173 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT 252 (751)
Q Consensus 173 ~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~ 252 (751)
++||+++++.. .....|...|.+++|+| ++.++++|+.|+.|++||+++++.+.
T Consensus 293 ~vwd~~~~~~~-------------------------~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~ 346 (464)
T 3v7d_B 293 IVWDVAQMKCL-------------------------YILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMY 346 (464)
T ss_dssp EEEETTTTEEE-------------------------EEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEEECCCCcEE-------------------------EEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEE
Confidence 99999876421 11233677899999999 47899999999999999998765433
Q ss_pred ccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
.+ .+|.. .|++++|+ +++|++++.|+.|++||+.+
T Consensus 347 ~~--------------------~~h~~-~v~~~~~~--~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 347 TL--------------------QGHTA-LVGLLRLS--DKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp EE--------------------CCCSS-CEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred EE--------------------eCCCC-cEEEEEEc--CCEEEEEeCCCcEEEEECCC
Confidence 22 23444 59999997 58999999999999999887
No 79
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.97 E-value=1.2e-28 Score=261.90 Aligned_cols=228 Identities=17% Similarity=0.223 Sum_probs=181.3
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEec----ccCCcceEEEEEecCCCCcEEEEEECCCcEE
Q 004468 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE----TGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (751)
Q Consensus 45 ~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~----~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~ 120 (751)
.+.+|.+.|++++|+|++++|++++ ||.|+|||+.++.....+. .+|...|.+++|+|+ +++|++++.|+.|+
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~ 122 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD--GCTLIVGGEASTLS 122 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT--SSEEEEEESSSEEE
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCC--CCEEEEEcCCCcEE
Confidence 3347999999999999999999999 9999999998765332221 279999999999998 79999999999999
Q ss_pred EEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEec
Q 004468 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (751)
Q Consensus 121 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (751)
+||+..... .....+..|...|.+++|+| ++.+|++++.||.|++||+++++..
T Consensus 123 ~~d~~~~~~--------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~----------------- 176 (337)
T 1gxr_A 123 IWDLAAPTP--------RIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLV----------------- 176 (337)
T ss_dssp EEECCCC----------EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEE-----------------
T ss_pred EEECCCCCc--------ceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCcee-----------------
Confidence 999986421 24667888999999999999 6789999999999999999876421
Q ss_pred ccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcccc
Q 004468 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (751)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (751)
.....|...+.+++|+| ++.+|++++.|+.|++||+++.+.+..+ .+ ..
T Consensus 177 --------~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~---------------------~~-~~ 225 (337)
T 1gxr_A 177 --------RQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQH---------------------DF-TS 225 (337)
T ss_dssp --------EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEE---------------------EC-SS
T ss_pred --------eeeecccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeee---------------------cC-CC
Confidence 11123567899999999 4789999999999999999876533221 01 12
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCC
Q 004468 281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (751)
Q Consensus 281 ~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~ 333 (751)
.+++++|+|++++|++++.++.|++||+.+.. ......+...+..++|+|+.
T Consensus 226 ~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~ 277 (337)
T 1gxr_A 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-KYQLHLHESCVLSLKFAYCG 277 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSSC-EEEECCCSSCEEEEEECTTS
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCC-eEEEcCCccceeEEEECCCC
Confidence 59999999999999999999999999999854 23334445556666666643
No 80
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-28 Score=270.30 Aligned_cols=225 Identities=12% Similarity=0.168 Sum_probs=183.8
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCC
Q 004468 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (751)
Q Consensus 49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~ 128 (751)
|.+.|++++|+|+|++||+|+.||.|+||| .++..+..+ .+|...|.+++|+|+ +++|++++.|+.|++||+..+
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~- 181 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVL-NFHRAPIVSVKWNKD--GTHIISMDVENVTILWNVISG- 181 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEE-CCCCSCEEEEEECTT--SSEEEEEETTCCEEEEETTTT-
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeec-cCCCccEEEEEECCC--CCEEEEEecCCeEEEEECCCC-
Confidence 788999999999999999999999999999 667788888 799999999999999 799999999999999999864
Q ss_pred CCCCCCCCCCCceeecccCCc---------------eeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCcc
Q 004468 129 GRGLDDNAITPSALYQCHTRR---------------VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (751)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~---------------V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~ 193 (751)
+.+..+..|... |.+++|+| + ..+++++.||.|++||+++++..
T Consensus 182 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~g~i~~~d~~~~~~~---------- 240 (425)
T 1r5m_A 182 ---------TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-D-DKFVIPGPKGAIFVYQITEKTPT---------- 240 (425)
T ss_dssp ---------EEEEEECCC---------------CCCBSCCEEEE-T-TEEEEECGGGCEEEEETTCSSCS----------
T ss_pred ---------cEEEEeeccccCccceeeccccCCcceeeEEEEcC-C-CEEEEEcCCCeEEEEEcCCCcee----------
Confidence 446666667666 99999998 4 46889999999999999986532
Q ss_pred ceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccc
Q 004468 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (751)
Q Consensus 194 ~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (751)
.....+...|.+++|+|+ +.+|++++.|+.|++||+++.+.+..+
T Consensus 241 ---------------~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~------------------- 285 (425)
T 1r5m_A 241 ---------------GKLIGHHGPISVLEFNDT-NKLLLSASDDGTLRIWHGGNGNSQNCF------------------- 285 (425)
T ss_dssp ---------------EEECCCSSCEEEEEEETT-TTEEEEEETTSCEEEECSSSBSCSEEE-------------------
T ss_pred ---------------eeeccCCCceEEEEECCC-CCEEEEEcCCCEEEEEECCCCccceEe-------------------
Confidence 111235678999999995 789999999999999999876543322
Q ss_pred cCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcc
Q 004468 274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLE 337 (751)
Q Consensus 274 ~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~ 337 (751)
.+|.. .|++++|+|++ +|++++.|+.|++||+.++........+...+..++|+|+.+.+.
T Consensus 286 -~~~~~-~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 346 (425)
T 1r5m_A 286 -YGHSQ-SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYA 346 (425)
T ss_dssp -CCCSS-CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEE
T ss_pred -cCCCc-cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEE
Confidence 12333 59999999999 999999999999999998765555556677888889998765443
No 81
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=2.4e-28 Score=258.24 Aligned_cols=255 Identities=22% Similarity=0.312 Sum_probs=205.8
Q ss_pred cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004468 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (751)
Q Consensus 26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s 105 (751)
.+..+++|+.. ..+....+.+|...|++++|+|++++|++|+.|+.|+|||+.+++.+..+ .+|...|.+++|+|+
T Consensus 43 ~dg~i~iw~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~- 118 (312)
T 4ery_A 43 ADKLIKIWGAY--DGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ- 118 (312)
T ss_dssp TTSCEEEEETT--TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSS-
T ss_pred CCCeEEEEeCC--CcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEE-cCCCCCEEEEEEcCC-
Confidence 45677787643 45567889999999999999999999999999999999999999999888 899999999999999
Q ss_pred CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004468 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (751)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~ 185 (751)
+.+|++|+.|+.|++||+... +++..+..|...|.+++|+| ++.+|++++.||.|++||+++++..
T Consensus 119 -~~~l~s~~~d~~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~-- 184 (312)
T 4ery_A 119 -SNLIVSGSFDESVRIWDVKTG----------KCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCL-- 184 (312)
T ss_dssp -SSEEEEEETTSCEEEEETTTC----------CEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEE--
T ss_pred -CCEEEEEeCCCcEEEEECCCC----------EEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcee--
Confidence 799999999999999999864 45778889999999999999 6789999999999999999886521
Q ss_pred CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccc
Q 004468 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (751)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~ 265 (751)
..+ ...+...+.+++|+|+ +.+|++++.|+.|++||+++.+.+..+..
T Consensus 185 ---------~~~-------------~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--------- 232 (312)
T 4ery_A 185 ---------KTL-------------IDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSKGKCLKTYTG--------- 232 (312)
T ss_dssp ---------EEE-------------CCSSCCCEEEEEECTT-SSEEEEEETTTEEEEEETTTTEEEEEECS---------
T ss_pred ---------eEE-------------eccCCCceEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEEEe---------
Confidence 000 1123457889999994 78999999999999999987654332210
Q ss_pred cccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccC
Q 004468 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ 339 (751)
Q Consensus 266 ~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~ 339 (751)
+. .....+......+++.+|++++.|+.|++||+.++........+...+..++|+|..+.+...
T Consensus 233 -----~~----~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 297 (312)
T 4ery_A 233 -----HK----NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 297 (312)
T ss_dssp -----SC----CSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred -----cC----CceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEE
Confidence 00 011113333344688999999999999999999977666666677788889999987765543
No 82
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=1.6e-28 Score=289.62 Aligned_cols=227 Identities=20% Similarity=0.237 Sum_probs=181.6
Q ss_pred cccccccchhhhcc---ccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEe
Q 004468 26 VNHSLQMHSSLVRR---LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102 (751)
Q Consensus 26 ~~~~l~~~~~~i~~---~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fs 102 (751)
.+..+++|+..... ....+.|.+|.+.|++++|+|+|++|+||+.|++|+|||+.++..+..+ .+|...|.+++|+
T Consensus 403 ~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~-~~h~~~v~~~~~s 481 (694)
T 3dm0_A 403 RDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRF-VGHTKDVLSVAFS 481 (694)
T ss_dssp TTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEC
T ss_pred CCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEE-eCCCCCEEEEEEe
Confidence 46778888643221 2345789999999999999999999999999999999999999999888 8999999999999
Q ss_pred cCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCC-CCEEEEEeCCCcEEEEecCCCC
Q 004468 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGS 181 (751)
Q Consensus 103 p~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~~l~s~s~Dg~I~iwDlr~~~ 181 (751)
|+ +.+|+||+.|++|+|||+...... .......+|...|.+++|+|+. ..+|++++.||+|++||+++.+
T Consensus 482 ~~--~~~l~s~s~D~~i~iwd~~~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~ 552 (694)
T 3dm0_A 482 LD--NRQIVSASRDRTIKLWNTLGECKY-------TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552 (694)
T ss_dssp TT--SSCEEEEETTSCEEEECTTSCEEE-------EECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC
T ss_pred CC--CCEEEEEeCCCEEEEEECCCCcce-------eeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc
Confidence 99 799999999999999998642100 0112235799999999999954 2589999999999999998764
Q ss_pred CCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCC
Q 004468 182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 261 (751)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~ 261 (751)
.. .....|...|++++|+| ++.+|++|+.|+.|+|||+++.+.+..+
T Consensus 553 ~~-------------------------~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~~~~~------- 599 (694)
T 3dm0_A 553 LR-------------------------STLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSL------- 599 (694)
T ss_dssp EE-------------------------EEECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTEEEECC-------
T ss_pred EE-------------------------EEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEe-------
Confidence 21 11234678899999999 5799999999999999999876543221
Q ss_pred CccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
..+ ..|++++|+|++.+|++++ ++.|+|||+.++
T Consensus 600 -------------~~~--~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~ 633 (694)
T 3dm0_A 600 -------------EAN--SVIHALCFSPNRYWLCAAT-EHGIKIWDLESK 633 (694)
T ss_dssp -------------BCS--SCEEEEEECSSSSEEEEEE-TTEEEEEETTTT
T ss_pred -------------cCC--CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCC
Confidence 111 2499999999998776654 567999999884
No 83
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=3.3e-28 Score=267.14 Aligned_cols=220 Identities=16% Similarity=0.264 Sum_probs=180.9
Q ss_pred ccccccchhhhccccccEEecc-CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004468 27 NHSLQMHSSLVRRLSQERELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~g-H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s 105 (751)
+..+++|+... .+....+.. |.+.|++++|+|+|++||+|+.||.|+|||+.+++.+..+ .+|...|.+++|.
T Consensus 112 d~~v~lw~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~--- 185 (401)
T 4aez_A 112 ERNVYVWNADS--GSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM-AGHQARVGCLSWN--- 185 (401)
T ss_dssp TTEEEEEETTT--CCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEEE---
T ss_pred CCeEEEeeCCC--CcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEe-cCCCCceEEEEEC---
Confidence 45677776433 334455554 8999999999999999999999999999999999999988 7999999999994
Q ss_pred CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004468 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (751)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~ 185 (751)
+.+|++|+.|+.|++||+.... ..+..+.+|...|.+++|+| ++.+|++|+.||+|++||++++...
T Consensus 186 -~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~-- 252 (401)
T 4aez_A 186 -RHVLSSGSRSGAIHHHDVRIAN---------HQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPK-- 252 (401)
T ss_dssp -TTEEEEEETTSEEEEEETTSSS---------CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEE--
T ss_pred -CCEEEEEcCCCCEEEEecccCc---------ceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCcc--
Confidence 4699999999999999998532 45778889999999999999 7789999999999999999886421
Q ss_pred CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe--CCCeEEEEeCCCCCCccccCCCCCCCCc
Q 004468 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--SDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (751)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs--~D~~IriwD~~~~~~~~~~~~~~~~~~~ 263 (751)
.....+...|.+++|+|++..++++|+ .|+.|++||+++.+.+..+.
T Consensus 253 -----------------------~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-------- 301 (401)
T 4aez_A 253 -----------------------FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-------- 301 (401)
T ss_dssp -----------------------EEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE--------
T ss_pred -----------------------EEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe--------
Confidence 111236678999999998778888876 79999999999765433221
Q ss_pred cccccccccccCCccccceEEEEEcCCCCEEEEEe--CCCcEEEEECCC
Q 004468 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLMDVNH 310 (751)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s--~d~~I~lwdl~~ 310 (751)
+ ...|++++|+|++++|++++ .|+.|++||+.+
T Consensus 302 -------------~-~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 302 -------------A-GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp -------------C-SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred -------------C-CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence 1 12599999999999999954 799999999766
No 84
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=8.3e-29 Score=268.75 Aligned_cols=247 Identities=11% Similarity=0.086 Sum_probs=178.4
Q ss_pred cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe---EEEEecccCCcceEEEEEe
Q 004468 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFV 102 (751)
Q Consensus 26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~---~~~~l~~~h~~~V~~v~fs 102 (751)
.+..+++|+......++.++|.+|.+.|++++|+|+|++||+|+.|++|+|||+.++. ....+ .+|...|.+++|+
T Consensus 31 ~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~ 109 (377)
T 3dwl_C 31 ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL-LRLNRAATFVRWS 109 (377)
T ss_dssp SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEEC-CCCSSCEEEEECC
T ss_pred CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe-cccCCceEEEEEC
Confidence 4677888886655447888999999999999999999999999999999999998876 45555 7899999999999
Q ss_pred cCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecc-cCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCC
Q 004468 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (751)
Q Consensus 103 p~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~ 181 (751)
|+ +++|++|+.|+.|++||+..... ......+.. |...|.+++|+| ++.+|++++.||+|++||++...
T Consensus 110 ~~--~~~l~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~ 179 (377)
T 3dwl_C 110 PN--EDKFAVGSGARVISVCYFEQEND-------WWVSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRD 179 (377)
T ss_dssp TT--SSCCEEEESSSCEEECCC------------CCCCEEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSS
T ss_pred CC--CCEEEEEecCCeEEEEEECCccc-------ceeeeEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecc
Confidence 98 79999999999999999986421 123667777 999999999999 67899999999999999997654
Q ss_pred CCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCC
Q 004468 182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 261 (751)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~ 261 (751)
........... ........+... .|...|++++|+|+ +.+|++++.|+.|++||+++.+....
T Consensus 180 ~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~v~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~~~-------- 242 (377)
T 3dwl_C 180 VDAKPEASVWG-------SRLPFNTVCAEY-PSGGWVHAVGFSPS-GNALAYAGHDSSVTIAYPSAPEQPPR-------- 242 (377)
T ss_dssp CC-CCCSCSSC-------SCCCEEEEEECC-CCSSSEEEEEECTT-SSCEEEEETTTEEC-CEECSTTSCEE--------
T ss_pred cCCCccccccc-------cccchhhhhhcc-cCCceEEEEEECCC-CCEEEEEeCCCcEEEEECCCCCCcce--------
Confidence 22111000000 000001112222 57788999999994 78999999999999999997653100
Q ss_pred CccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
++..+ .+|.. .|++++|+|+|++|++++.++.+ +|+...
T Consensus 243 -~~~~~-------~~~~~-~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 243 -ALITV-------KLSQL-PLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp -ECCCE-------ECSSS-CEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred -eeEee-------cCCCC-ceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 01111 23333 59999999999998888655555 777664
No 85
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=9.2e-28 Score=253.29 Aligned_cols=227 Identities=16% Similarity=0.230 Sum_probs=179.3
Q ss_pred cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004468 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (751)
Q Consensus 26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s 105 (751)
.++++++|+....+......+.+|...|++|+|+|+|++||||+.||+|+|||+.+++.+..+ .+|...+.++.+.
T Consensus 43 ~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~-~~h~~~~~~~~~~--- 118 (318)
T 4ggc_A 43 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWN--- 118 (318)
T ss_dssp ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEE---
T ss_pred eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe-cCccceEEEeecC---
Confidence 478899998554443333445678899999999999999999999999999999999999998 8999988887665
Q ss_pred CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004468 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (751)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~ 185 (751)
+.++++|+.++.+++|+..... ..+..+.+|...+..+.+.+ ++.+|++++.||+|++||+++++....
T Consensus 119 -~~~l~s~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~ 187 (318)
T 4ggc_A 119 -SYILSSGSRSGHIHHHDVRVAE---------HHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWV 187 (318)
T ss_dssp -TTEEEEEETTSEEEEEETTSSS---------CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTBSC
T ss_pred -CCEEEEEecCCceEeeecCCCc---------eeEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCccccc
Confidence 4689999999999999998642 44677889999999999999 678999999999999999998753211
Q ss_pred CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEE--EEeCCCeEEEEeCCCCCCccccCCCCCCCCc
Q 004468 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL--VGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (751)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~--sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~ 263 (751)
. ......+...|.++.++|.++..+. +++.++.|++||.+........
T Consensus 188 ~---------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~--------- 237 (318)
T 4ggc_A 188 P---------------------LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV--------- 237 (318)
T ss_dssp C---------------------SEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE---------
T ss_pred c---------------------eeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc---------
Confidence 0 1111225567899999997766654 5667899999999875432111
Q ss_pred cccccccccccCCccccceEEEEEcCCCCEEEEEe--CCCcEEEEECCC
Q 004468 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLMDVNH 310 (751)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s--~d~~I~lwdl~~ 310 (751)
.+ ...+..+.|+|+++++++++ .|+.|+|||+.+
T Consensus 238 ------------~~-~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~ 273 (318)
T 4ggc_A 238 ------------DA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT 273 (318)
T ss_dssp ------------EC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred ------------cc-eeeeeeeeecccccceEEEEEcCCCEEEEEECCC
Confidence 11 12489999999999988765 589999999876
No 86
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.2e-29 Score=295.43 Aligned_cols=220 Identities=15% Similarity=0.250 Sum_probs=175.5
Q ss_pred cEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC--CCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEE
Q 004468 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (751)
Q Consensus 43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~--~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~ 120 (751)
+..+.||.+.|++++|+|+|++||+|+.||+|+|||+. +++.+..+ .+|.+.|.+++|+|+.++++|++|+.||+|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 46789999999999999999999999999999999987 55667777 8999999999999875568999999999999
Q ss_pred EEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCC-CCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (751)
Q Consensus 121 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (751)
+||+..+.. ..+..+.+|...|++++|+|+. +.+|++|+.||+|++||++++..... .
T Consensus 81 vwd~~~~~~--------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~----------~--- 139 (753)
T 3jro_A 81 IWKEENGRW--------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP----------I--- 139 (753)
T ss_dssp EEEEETTEE--------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC----------E---
T ss_pred EEECCCCcc--------cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce----------e---
Confidence 999986421 2567788999999999999942 78999999999999999998742210 0
Q ss_pred cccCceecccCCCCCccceEEEEEeCC------------CCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccc
Q 004468 200 LRCGAKRSLADPPKQTLSLKSCDISST------------RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF 267 (751)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~------------~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~ 267 (751)
....+...|.+++|+|. ++.++++|+.|+.|++||+++...... +...+
T Consensus 140 ----------~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~---------~~~~~ 200 (753)
T 3jro_A 140 ----------IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV---------LESTL 200 (753)
T ss_dssp ----------EEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEE---------EEEEE
T ss_pred ----------EeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccce---------eeeee
Confidence 11235678999999995 478999999999999999987542211 11111
Q ss_pred cccccccCCccccceEEEEEcCC---CCEEEEEeCCCcEEEEECCCC
Q 004468 268 CPMHLSEHGRSSLHLTHVTFSPN---GEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 268 ~~~~~~~~g~~~~~vt~v~fspd---g~~Ll~~s~d~~I~lwdl~~~ 311 (751)
.+|.. .|++++|+|+ +++|++++.|+.|++||+.++
T Consensus 201 -------~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 201 -------EGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp -------CCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred -------cCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence 23444 6999999999 899999999999999998873
No 87
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=1.5e-28 Score=273.14 Aligned_cols=189 Identities=14% Similarity=0.127 Sum_probs=155.7
Q ss_pred cccccccchhhhccccccEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeccc--CCcceEEEEEe
Q 004468 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCTKFV 102 (751)
Q Consensus 26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~--h~~~V~~v~fs 102 (751)
.+..+++|+...........+.+|.+.|++|+|+| ++++|+|||.||+|+|||+.++...... .. +...+.+++|+
T Consensus 140 ~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~ 218 (435)
T 4e54_B 140 KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFA-SSDTINIWFCSLDVS 218 (435)
T ss_dssp TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEE-CCSSCSCCCCCEEEE
T ss_pred CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEe-ccCCCCccEEEEEEC
Confidence 46778888766666666777889999999999998 7899999999999999999865443332 33 34567899999
Q ss_pred cCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004468 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (751)
Q Consensus 103 p~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~ 182 (751)
|+ +.+|++|+.|+.|++||+.. +.+..+.+|...|.+++|+|++..+|++|+.|++|++||+++.+.
T Consensus 219 ~~--~~~l~~g~~dg~i~~wd~~~-----------~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~ 285 (435)
T 4e54_B 219 AS--SRMVVTGDNVGNVILLNMDG-----------KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG 285 (435)
T ss_dssp TT--TTEEEEECSSSBEEEEESSS-----------CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS
T ss_pred CC--CCEEEEEeCCCcEeeeccCc-----------ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccc
Confidence 99 89999999999999999974 346778899999999999997778999999999999999998653
Q ss_pred CCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 004468 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (751)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~ 251 (751)
... +.....|...|++++|+| ++.+|++|+.|+.|+|||+++....
T Consensus 286 ~~~----------------------~~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 286 KAS----------------------FLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQWDCP 331 (435)
T ss_dssp SSC----------------------CSBCCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESSSSSSE
T ss_pred cce----------------------EEEeeeccccccceeECC-CCCeeEEEcCCCEEEEEECCCCccc
Confidence 211 112234678899999999 5799999999999999999986543
No 88
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.96 E-value=1.3e-28 Score=264.90 Aligned_cols=258 Identities=13% Similarity=0.124 Sum_probs=183.0
Q ss_pred ccccccchhhhccccccEEecc-----CCCcEEEEEECCC----CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceE
Q 004468 27 NHSLQMHSSLVRRLSQERELEG-----HQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF 97 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~g-----H~~~V~~l~~s~d----g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~ 97 (751)
+..+++|+.. +.+.+..+.. |.+.|++++|+|+ |++|++|+.||.|+|||+.+++.+..+ .+|...|.
T Consensus 43 ~~~v~vw~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~ 119 (366)
T 3k26_A 43 SNRVTLYECH--SQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHY-VGHGNAIN 119 (366)
T ss_dssp TTEEEEEEEC--GGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEE-ESCCSCEE
T ss_pred CCEEEEEEcC--CCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeee-cCCCCcEE
Confidence 3456777643 2233444443 6688999999998 679999999999999999999999888 79999999
Q ss_pred EEEEec-CCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceee---cccCCceeEEEEecCCCCEEEEEeCCCcEE
Q 004468 98 CTKFVP-ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY---QCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173 (751)
Q Consensus 98 ~v~fsp-~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~---~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~ 173 (751)
+++|+| + +.+|++|+.|+.|++||+..+ +.+..+ ..|...|.+++|+| ++.+|++++.||.|+
T Consensus 120 ~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 186 (366)
T 3k26_A 120 ELKFHPRD--PNLLLSVSKDHALRLWNIQTD----------TLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLK 186 (366)
T ss_dssp EEEECSSC--TTEEEEEETTSCEEEEETTTT----------EEEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred EEEECCCC--CCEEEEEeCCCeEEEEEeecC----------eEEEEecccccccCceeEEEECC-CCCEEEEecCCCCEE
Confidence 999999 6 799999999999999999864 345555 68999999999999 678999999999999
Q ss_pred EEecCCCCCCCCCCC---CCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC
Q 004468 174 QHDFRQGSSCPPAGS---SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 250 (751)
Q Consensus 174 iwDlr~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~ 250 (751)
+||+++++....... .........................+...|.+++|+ +.+|++++.|+.|++||+++...
T Consensus 187 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~ 263 (366)
T 3k26_A 187 LWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMED 263 (366)
T ss_dssp EEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTC
T ss_pred EEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccc
Confidence 999987642200000 000000000000000000111223377889999998 46999999999999999987653
Q ss_pred ccccC-CCCCCCCccccccccccccCCccccceEEEEEcCC--CCEEEEEeCCCcEEEEECCCC
Q 004468 251 LTSCQ-KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN--GEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 251 ~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspd--g~~Ll~~s~d~~I~lwdl~~~ 311 (751)
..... ........+..+ .+|.. .|++++|+|+ |++|++++.|+.|++||+.++
T Consensus 264 ~~~~~~~~~~~~~~~~~~-------~~~~~-~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 264 DIDKIKPSESNVTILGRF-------DYSQC-DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp CGGGCCTTCCCEEEEEEE-------ECSSC-CSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred cccccccCCcchheeccc-------cccCC-cEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 21111 000000111111 22333 5889999999 999999999999999998873
No 89
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.96 E-value=3.5e-28 Score=262.59 Aligned_cols=246 Identities=13% Similarity=0.134 Sum_probs=187.5
Q ss_pred cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-cccCCcceEEEEEecC
Q 004468 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPE 104 (751)
Q Consensus 26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l-~~~h~~~V~~v~fsp~ 104 (751)
.+..+++|+....++++...+.+|.+.|++++|+|++++|++|+.|+.|+|||+.+++....+ ...|...|.+++|+|+
T Consensus 28 ~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 107 (372)
T 1k8k_C 28 NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN 107 (372)
T ss_dssp SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT
T ss_pred CCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCC
Confidence 467788887655555688999999999999999999999999999999999999888754433 2679999999999999
Q ss_pred CCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 004468 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 184 (751)
Q Consensus 105 s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~ 184 (751)
+++|++|+.|+.|++||+....... ........|...|.+++|+| ++.+|++++.||.|++||++......
T Consensus 108 --~~~l~~~~~d~~v~i~d~~~~~~~~------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~ 178 (372)
T 1k8k_C 108 --EKKFAVGSGSRVISICYFEQENDWW------VCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEE 178 (372)
T ss_dssp --SSEEEEEETTSSEEEEEEETTTTEE------EEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSC
T ss_pred --CCEEEEEeCCCEEEEEEecCCCcce------eeeeeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccc
Confidence 7999999999999999998642100 01233467899999999999 67899999999999999987543211
Q ss_pred CCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004468 185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (751)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~ 264 (751)
..... .+.........+.....|...|.+++|+|+ +.+|++++.|+.|++||+++.+.+..+
T Consensus 179 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~---------- 240 (372)
T 1k8k_C 179 RPAPT-------PWGSKMPFGELMFESSSSCGWVHGVCFSAN-GSRVAWVSHDSTVCLADADKKMAVATL---------- 240 (372)
T ss_dssp CCCCB-------TTBSCCCTTCEEEECCCCSSCEEEEEECSS-SSEEEEEETTTEEEEEEGGGTTEEEEE----------
T ss_pred ccccc-------ccccccchhhheEecCCCCCeEEEEEECCC-CCEEEEEeCCCEEEEEECCCCceeEEE----------
Confidence 00000 000000001112223346778999999994 789999999999999999876543322
Q ss_pred ccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 265 ~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
.+|.. .|++++|+|++++|+++ .|+.|++|++.+
T Consensus 241 ----------~~~~~-~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 241 ----------ASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp ----------ECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred ----------ccCCC-CeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 12322 59999999999988877 999999999987
No 90
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.96 E-value=1e-27 Score=255.48 Aligned_cols=225 Identities=20% Similarity=0.298 Sum_probs=182.6
Q ss_pred cccccccchhhhc---cccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEe
Q 004468 26 VNHSLQMHSSLVR---RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102 (751)
Q Consensus 26 ~~~~l~~~~~~i~---~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fs 102 (751)
.+..+++|+.... ...+.++|++|.+.|++++|+|+|++|++|+.|+.|++|+.......... ..+...+..+.++
T Consensus 59 ~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 137 (340)
T 4aow_A 59 RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF-VGHTKDVLSVAFS 137 (340)
T ss_dssp TTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEC
T ss_pred CCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeee-cCCCCceeEEEEe
Confidence 4678888874322 23467889999999999999999999999999999999999988887777 6788899999999
Q ss_pred cCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCC-CEEEEEeCCCcEEEEecCCCC
Q 004468 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP-HVVWSASEDGTLRQHDFRQGS 181 (751)
Q Consensus 103 p~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~~l~s~s~Dg~I~iwDlr~~~ 181 (751)
|. +.+|++|+.|+.+++||+.... .......+|...|..++|+++.. .++++++.|++|++||+++++
T Consensus 138 ~~--~~~l~s~s~d~~~~~~d~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~ 206 (340)
T 4aow_A 138 SD--NRQIVSGSRDKTIKLWNTLGVC---------KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK 206 (340)
T ss_dssp TT--SSCEEEEETTSCEEEECTTSCE---------EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE
T ss_pred ec--CccceeecCCCeEEEEEeCCCc---------eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc
Confidence 99 7899999999999999987531 23455678999999999998543 478899999999999998765
Q ss_pred CCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCC
Q 004468 182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 261 (751)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~ 261 (751)
.. .....|...|++++|+| ++.+|++|+.|+.|++||+++.+.+..+
T Consensus 207 ~~-------------------------~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~------- 253 (340)
T 4aow_A 207 LK-------------------------TNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTL------- 253 (340)
T ss_dssp EE-------------------------EEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEE-------
T ss_pred ee-------------------------eEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeee-------
Confidence 21 11223677899999999 4799999999999999999876543221
Q ss_pred CccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
.++. .|+.+.|+|++. +++++.|+.|+|||+.+.
T Consensus 254 -------------~~~~--~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~ 287 (340)
T 4aow_A 254 -------------DGGD--IINALCFSPNRY-WLCAATGPSIKIWDLEGK 287 (340)
T ss_dssp -------------ECSS--CEEEEEECSSSS-EEEEEETTEEEEEETTTT
T ss_pred -------------cCCc--eEEeeecCCCCc-eeeccCCCEEEEEECCCC
Confidence 1121 499999999876 556677999999998873
No 91
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.96 E-value=3.1e-28 Score=261.12 Aligned_cols=229 Identities=14% Similarity=0.174 Sum_probs=177.8
Q ss_pred ccccccchhhhccccccEEeccCCCcEEEEEECCC---CCEEEEEeCCCcEEEEeCCCCe-EEEEecccCCcceEEEEE-
Q 004468 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK---GSLLISGSDDTHINVWSYSSRK-LLHSIETGHSANVFCTKF- 101 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~d---g~~LaSgs~Dg~I~IWd~~~~~-~~~~l~~~h~~~V~~v~f- 101 (751)
+..+++|+....+...... .+|.+.|++++|+|+ |++|++|+.||.|+|||+.+++ .+..+ .+|...|.+++|
T Consensus 43 d~~v~iw~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~ 120 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLRE-IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSV-KGHKEIINAIDGI 120 (357)
T ss_dssp CEEEEEEEECSSSEEEEEE-EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEE-CCCSSCEEEEEEE
T ss_pred CcEEEEEeCCCCcccceee-ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEE-EecccceEEEeec
Confidence 5678888755444333333 379999999999998 7999999999999999999887 77777 799999999976
Q ss_pred -----ecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCC----ceeEEE----EecCCCCEEEEEeC
Q 004468 102 -----VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR----RVKKLA----VEVGNPHVVWSASE 168 (751)
Q Consensus 102 -----sp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~----~V~~l~----~sp~~~~~l~s~s~ 168 (751)
+|+ +++|++|+.|+.|++||+.... .++..+..|.+ .|.+++ |+| ++.+|++++.
T Consensus 121 ~~~~~s~~--~~~l~~~~~d~~i~vwd~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~ 188 (357)
T 3i2n_A 121 GGLGIGEG--APEIVTGSRDGTVKVWDPRQKD---------DPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYD 188 (357)
T ss_dssp SGGGCC-C--CCEEEEEETTSCEEEECTTSCS---------SCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEET
T ss_pred cccccCCC--ccEEEEEeCCCeEEEEeCCCCC---------CcceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEcc
Confidence 456 7899999999999999998642 24566655554 899998 567 6789999999
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCC--CCcEEEEEeCCCeEEEEeCC
Q 004468 169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST--RPHLLLVGGSDAFARLYDRR 246 (751)
Q Consensus 169 Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~--~~~~l~sgs~D~~IriwD~~ 246 (751)
||.|++||+++++.. .. ..+...|.+++|+|. ++.+|++|+.|+.|++||++
T Consensus 189 d~~i~i~d~~~~~~~------------~~--------------~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 242 (357)
T 3i2n_A 189 NGDIKLFDLRNMALR------------WE--------------TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMR 242 (357)
T ss_dssp TSEEEEEETTTTEEE------------EE--------------EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEE
T ss_pred CCeEEEEECccCcee------------ee--------------cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc
Confidence 999999999886521 00 114567999999993 37899999999999999998
Q ss_pred CCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCC-EEEEEeCCCcEEEEECCCC
Q 004468 247 MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~-~Ll~~s~d~~I~lwdl~~~ 311 (751)
+.+....+. ... ..+|.. .|++++|+|+++ +|++++.|+.|++||+..+
T Consensus 243 ~~~~~~~~~-------------~~~--~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 243 TQHPTKGFA-------------SVS--EKAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp EEETTTEEE-------------EEE--EECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred CCCccccee-------------eec--cCCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence 755432210 000 013433 699999999999 8999999999999998873
No 92
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=1.3e-27 Score=254.12 Aligned_cols=192 Identities=16% Similarity=0.150 Sum_probs=140.9
Q ss_pred EecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecC-CCCEEEE
Q 004468 87 SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWS 165 (751)
Q Consensus 87 ~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~~l~s 165 (751)
.+..+|.+.|++++|+|+ +.+|++|+.|+.|+|||+...... .+....+.+|...|.+++|+|. ++.+|++
T Consensus 5 ~~~~gH~~~v~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s 76 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFY--GRHVATCSSDQHIKVFKLDKDTSN------WELSDSWRAHDSSIVAIDWASPEYGRIIAS 76 (351)
T ss_dssp CEECCCSSCEEEEEECSS--SSEEEEEETTSEEEEEEECSSSCC------EEEEEEEECCSSCEEEEEECCGGGCSEEEE
T ss_pred ccCcccccceeEEEEcCC--CCEEEEeeCCCeEEEEECCCCCCc------ceecceeccCCCcEEEEEEcCCCCCCEEEE
Confidence 344799999999999998 899999999999999999864321 1346677899999999999985 4789999
Q ss_pred EeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC-CcEEEEEeCCCeEEEEe
Q 004468 166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYD 244 (751)
Q Consensus 166 ~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~sgs~D~~IriwD 244 (751)
++.||+|++||++++...... . ....+.....|...|.+++|+|+. +.+|++++.|+.|++||
T Consensus 77 ~~~dg~v~vwd~~~~~~~~~~-----~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd 140 (351)
T 3f3f_A 77 ASYDKTVKLWEEDPDQEECSG-----R-----------RWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYD 140 (351)
T ss_dssp EETTSCEEEEEECTTSCTTSS-----C-----------SEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEE
T ss_pred EcCCCeEEEEecCCCcccccc-----c-----------CcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEec
Confidence 999999999999987532100 0 001112223467889999999942 78999999999999999
Q ss_pred CCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCC---CCEEEEEeCCCcEEEEECCC
Q 004468 245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN---GEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspd---g~~Ll~~s~d~~I~lwdl~~ 310 (751)
+++.+.+..+... ...........++.. .+++++|+|+ +.+|++++.++.+.+|+...
T Consensus 141 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~ 201 (351)
T 3f3f_A 141 ALEPSDLRSWTLT-------SEMKVLSIPPANHLQ-SDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD 201 (351)
T ss_dssp CSSTTCTTCCEEE-------EEEESCSCCCSSCSC-CCEEEEECCCSSSCCEEEEEETTEEEEEEECTT
T ss_pred CCChHHhcccccc-------ccccccccccCCccc-ceeEEEeccCCCCCcEEEEecCCCcEEEEccCC
Confidence 9987755433210 000011111122333 5999999997 99999999999997776544
No 93
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.96 E-value=7.4e-28 Score=262.13 Aligned_cols=244 Identities=11% Similarity=0.107 Sum_probs=179.7
Q ss_pred cccccccchhhhccccccEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEec--ccCCcceEEEEEe
Q 004468 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIE--TGHSANVFCTKFV 102 (751)
Q Consensus 26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~--~~h~~~V~~v~fs 102 (751)
.+..+++|+....+......+.+|.+.|++++|+| ++++|++|+.|+.|+|||+.+ ..+..+. .+|...|.+++|+
T Consensus 94 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~ 172 (383)
T 3ei3_B 94 KGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVS 172 (383)
T ss_dssp BTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEE
T ss_pred CCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEEC
Confidence 35678888765545444444558999999999999 789999999999999999985 4444442 2345889999999
Q ss_pred cCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004468 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (751)
Q Consensus 103 p~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~ 182 (751)
|+ +.+|++|+.|+.|++||+.. +++..+.+|...|.+++|+|++..+|++++.|++|++||+++.+.
T Consensus 173 ~~--~~~l~~~~~d~~i~i~d~~~-----------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 239 (383)
T 3ei3_B 173 VS--RQMLATGDSTGRLLLLGLDG-----------HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD 239 (383)
T ss_dssp TT--TTEEEEEETTSEEEEEETTS-----------CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS
T ss_pred CC--CCEEEEECCCCCEEEEECCC-----------CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc
Confidence 99 79999999999999999952 557888999999999999995544999999999999999998542
Q ss_pred CCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCC
Q 004468 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (751)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~ 262 (751)
.. .+...+ .+...|++++|+|.++.+|++++.|+.|++||+++.+....+........
T Consensus 240 ~~-------~~~~~~---------------~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 297 (383)
T 3ei3_B 240 KN-------SYIAEM---------------PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF 297 (383)
T ss_dssp TT-------CEEEEE---------------ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred cc-------ceEEEe---------------cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence 10 000111 25678999999994478999999999999999998775443321100000
Q ss_pred ccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
. ...+... .-+....+..++|+|+|++ +++.|+.|+|||+.++
T Consensus 298 ~--~~~~~~~--~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~ 340 (383)
T 3ei3_B 298 Q--HLTPIKA--TWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG 340 (383)
T ss_dssp T--TSCCCCC--EECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC
T ss_pred c--cccceEE--eccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC
Confidence 0 0000000 0011224667888888877 7778999999998773
No 94
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.96 E-value=3.4e-28 Score=265.49 Aligned_cols=245 Identities=11% Similarity=0.117 Sum_probs=183.8
Q ss_pred cccccccchhhhcc----ccccEEeccCCCcEEEEEECCC----C---CEEEEEeCCCcEEEEeCCCCeE-----EEEec
Q 004468 26 VNHSLQMHSSLVRR----LSQERELEGHQGCVNAISWNSK----G---SLLISGSDDTHINVWSYSSRKL-----LHSIE 89 (751)
Q Consensus 26 ~~~~l~~~~~~i~~----~~~~~~L~gH~~~V~~l~~s~d----g---~~LaSgs~Dg~I~IWd~~~~~~-----~~~l~ 89 (751)
.+..+++|+..... ..+...+.+|...|++++|+|+ | ++|++|+.|+.|+|||+.+++. +..+
T Consensus 34 ~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~- 112 (397)
T 1sq9_A 34 GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL- 112 (397)
T ss_dssp TTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE-
T ss_pred CCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceee-
Confidence 46677888765444 4578899999999999999999 9 9999999999999999987775 6677
Q ss_pred ccC-----CcceEEEEEe----cCCCCcE-EEEEECCCcEEEEECCC------CCCCCCCCCCCCCceee-------ccc
Q 004468 90 TGH-----SANVFCTKFV----PETSDEL-VVSGAGDAEVRLFNLSR------FSGRGLDDNAITPSALY-------QCH 146 (751)
Q Consensus 90 ~~h-----~~~V~~v~fs----p~s~~~~-l~sgs~Dg~V~vwd~~~------~~~~~~~~~~~~~~~~~-------~~h 146 (751)
.+| ...|.+++|+ |+ +.+ |++|+.|+.|++||+.. ..... ..+...+ ..|
T Consensus 113 ~~~~~~~~~~~v~~~~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 185 (397)
T 1sq9_A 113 DLLDSDMKKHSFWALKWGASNDRL--LSHRLVATDVKGTTYIWKFHPFADESNSLTLN-----WSPTLELQGTVESPMTP 185 (397)
T ss_dssp CCSCTTGGGSCEEEEEEECCC------CEEEEEEETTSCEEEEEEESSSSHHHHTTTC-----CCCEEEEEEEECCSSSS
T ss_pred cccccccCCCcEEEEEEeeccCCC--CceEEEEEeCCCcEEEEeCCccccccccceee-----ccCcceeeeeeccccCC
Confidence 678 5999999999 88 788 99999999999999986 31110 1112255 458
Q ss_pred CCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCC---ccceEEEEE
Q 004468 147 TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ---TLSLKSCDI 223 (751)
Q Consensus 147 ~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~v~~i~~ 223 (751)
...|.+++|+| ++ +|++++.||.|++||+++++.. .. +.....| ...|.+++|
T Consensus 186 ~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~--------------~~--------~~~~~~h~~~~~~i~~i~~ 241 (397)
T 1sq9_A 186 SQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPL--------------YN--------FESQHSMINNSNSIRSVKF 241 (397)
T ss_dssp CCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEE--------------EE--------EECCC---CCCCCEEEEEE
T ss_pred CCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCcee--------------EE--------EeccccccccCCccceEEE
Confidence 99999999999 55 9999999999999999876421 11 1111124 678999999
Q ss_pred eCCCCcEEEEEeCC---CeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCC
Q 004468 224 SSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300 (751)
Q Consensus 224 sp~~~~~l~sgs~D---~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d 300 (751)
+|+ +.+|++++.| +.|++||+++.+.+..+.....+... ......|.. .|++++|+|++++|++++.|
T Consensus 242 ~~~-~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d 312 (397)
T 1sq9_A 242 SPQ-GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQA-------SLGEFAHSS-WVMSLSFNDSGETLCSAGWD 312 (397)
T ss_dssp CSS-TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---------------CCBSBSS-CEEEEEECSSSSEEEEEETT
T ss_pred CCC-CCEEEEEecCCCCceEEEEECCCCcccceeccCcccccc-------cccccccCC-cEEEEEECCCCCEEEEEeCC
Confidence 995 7999999999 99999999987655443211000000 000001333 69999999999999999999
Q ss_pred CcEEEEECCCC
Q 004468 301 EHVYLMDVNHA 311 (751)
Q Consensus 301 ~~I~lwdl~~~ 311 (751)
+.|+|||+.++
T Consensus 313 g~i~iwd~~~~ 323 (397)
T 1sq9_A 313 GKLRFWDVKTK 323 (397)
T ss_dssp SEEEEEETTTT
T ss_pred CeEEEEEcCCC
Confidence 99999999884
No 95
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=3.4e-28 Score=266.99 Aligned_cols=212 Identities=21% Similarity=0.218 Sum_probs=164.8
Q ss_pred CcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeE----EEEecccCCcceEEEEEec-CCCCcEEEEEECCCcEEEEEC
Q 004468 51 GCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKL----LHSIETGHSANVFCTKFVP-ETSDELVVSGAGDAEVRLFNL 124 (751)
Q Consensus 51 ~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~----~~~l~~~h~~~V~~v~fsp-~s~~~~l~sgs~Dg~V~vwd~ 124 (751)
...+.++++|+.. ++++|+.||.|+||++..... +..+ .+|.+.|.+++|+| + +.+|++|+.|++|+|||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~p~~--~~~l~s~s~dg~v~vw~~ 111 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLV-CGHTAPVLDIAWCPHN--DNVIASGSEDCTVMVWEI 111 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCB-CCCSSCEEEEEECTTC--TTEEEEEETTSEEEEEEC
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceE-ecCCCCEEEEEeCCCC--CCEEEEEeCCCeEEEEEc
Confidence 3455789999875 445689999999999865432 2334 78999999999999 6 799999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004468 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (751)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (751)
....... ....++..+.+|...|.+++|+|++.++|++++.||+|++||+++++.. ..+
T Consensus 112 ~~~~~~~---~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~--------------~~~---- 170 (402)
T 2aq5_A 112 PDGGLVL---PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAV--------------LTL---- 170 (402)
T ss_dssp CTTCCSS---CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEE--------------EEE----
T ss_pred cCCCCcc---ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCcc--------------EEE----
Confidence 8642110 0114577889999999999999965589999999999999999876521 100
Q ss_pred eecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEE
Q 004468 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (751)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~ 284 (751)
....|...|.+++|+| ++.+|++++.|+.|++||+++.+.+..+ . .+|....+.+
T Consensus 171 -----~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------------~------~~~~~~~~~~ 225 (402)
T 2aq5_A 171 -----GPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEK-------------D------RPHEGTRPVH 225 (402)
T ss_dssp -----CTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEE-------------E------CSSCSSSCCE
T ss_pred -----ecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeee-------------c------cCCCCCcceE
Confidence 0123677899999999 5789999999999999999876533221 0 1233334889
Q ss_pred EEEcCCCCEEEEE---eCCCcEEEEECCCC
Q 004468 285 VTFSPNGEEVLLS---YSGEHVYLMDVNHA 311 (751)
Q Consensus 285 v~fspdg~~Ll~~---s~d~~I~lwdl~~~ 311 (751)
+.|+|++++|+++ +.|+.|++||+.+.
T Consensus 226 ~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 226 AVFVSEGKILTTGFSRMSERQVALWDTKHL 255 (402)
T ss_dssp EEECSTTEEEEEEECTTCCEEEEEEETTBC
T ss_pred EEEcCCCcEEEEeccCCCCceEEEEcCccc
Confidence 9999999999999 78999999998873
No 96
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.4e-27 Score=253.77 Aligned_cols=231 Identities=15% Similarity=0.184 Sum_probs=178.3
Q ss_pred cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004468 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (751)
Q Consensus 26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s 105 (751)
.+..+++|+ +.+.+.+.++.+|.+.|++++|+|++++|++++.|+.|+|||+.+++.+..+ . |...|.+++|+|+
T Consensus 52 ~dg~i~vwd--~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~-~~~~v~~~~~~~~- 126 (369)
T 3zwl_B 52 KDSSASVWY--SLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW-K-SPVPVKRVEFSPC- 126 (369)
T ss_dssp SSSCEEEEE--TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-E-CSSCEEEEEECTT-
T ss_pred CCCEEEEEe--CCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe-e-cCCCeEEEEEccC-
Confidence 356777776 3456788999999999999999999999999999999999999999998888 3 8899999999999
Q ss_pred CCcEEEEEECC-----CcEEEEECCCCCCCCC-CCCCCCCceeecccCC--ceeEEEEecCCCCEEEEEeCCCcEEEEec
Q 004468 106 SDELVVSGAGD-----AEVRLFNLSRFSGRGL-DDNAITPSALYQCHTR--RVKKLAVEVGNPHVVWSASEDGTLRQHDF 177 (751)
Q Consensus 106 ~~~~l~sgs~D-----g~V~vwd~~~~~~~~~-~~~~~~~~~~~~~h~~--~V~~l~~sp~~~~~l~s~s~Dg~I~iwDl 177 (751)
+.+|++++.+ +.|++||+........ ......++..+..|.. .|.+++|+| ++.+|++++.||.|++||+
T Consensus 127 -~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~ 204 (369)
T 3zwl_B 127 -GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKYIIAGHKDGKISKYDV 204 (369)
T ss_dssp -SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEET
T ss_pred -CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEEC
Confidence 8999999999 9999999986432110 0011134556667777 999999999 6789999999999999999
Q ss_pred CCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCC
Q 004468 178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR 257 (751)
Q Consensus 178 r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~ 257 (751)
++.... + .....+...|.+++|+| ++.+|++++.|+.|++||+++.+.+..+.
T Consensus 205 ~~~~~~-------------~-----------~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-- 257 (369)
T 3zwl_B 205 SNNYEY-------------V-----------DSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVSTLQVLKKYE-- 257 (369)
T ss_dssp TTTTEE-------------E-----------EEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE--
T ss_pred CCCcEe-------------E-----------EEEecCCCceeEEEECC-CCCEEEEecCCceEEEEECCCCceeeeec--
Confidence 874211 1 11112567899999999 57999999999999999998865433221
Q ss_pred CCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
+ ...++.++|+|++++|++++.++.+.+|....
T Consensus 258 -------------------~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 290 (369)
T 3zwl_B 258 -------------------T-DCPLNTAVITPLKEFIILGGGQEAKDVTTTSA 290 (369)
T ss_dssp -------------------C-SSCEEEEEECSSSSEEEEEECCC---------
T ss_pred -------------------C-CCCceeEEecCCCceEEEeecCCCceEEEEec
Confidence 1 12589999999999999999887766665433
No 97
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4e-28 Score=269.17 Aligned_cols=226 Identities=14% Similarity=0.202 Sum_probs=158.8
Q ss_pred ccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEec-CCCC
Q 004468 29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP-ETSD 107 (751)
Q Consensus 29 ~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp-~s~~ 107 (751)
.+.....++++++..-.+.... .|+|+++.+++++ +|+. +++.+..+..+|.+.|++++|+| + +
T Consensus 12 ~~~~~~~~l~~~~~~p~~~~~~------~f~~~~~~~~~~~------~w~~-~g~~~~~~~~~h~~~V~~~~~s~~~--~ 76 (437)
T 3gre_A 12 DVESIEKFLSTFKILPPLRDYK------EFGPIQEIVRSPN------MGNL-RGKLIATLMENEPNSITSSAVSPGE--T 76 (437)
T ss_dssp --CCCGGGTTCC-CCCCGGGCG------GGCCCCCCCCCCC------GGGC-CCCEEEEECTTTTSCEEEEEEECSS--S
T ss_pred ChhHHHHHhccCCCCCChhchh------hcCCccccccccc------cccc-cceEEeeeccCCCCceEEEEECCCC--C
Confidence 3444445555555544444332 4889999888876 4884 57788888678999999999999 7 7
Q ss_pred cEEEEEECCCcEEEEECCCCC-CCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC---CCCCC
Q 004468 108 ELVVSGAGDAEVRLFNLSRFS-GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR---QGSSC 183 (751)
Q Consensus 108 ~~l~sgs~Dg~V~vwd~~~~~-~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr---~~~~~ 183 (751)
.+|++|+.|++|+|||+.... +.. ..+...+ .|...|++++|+| ++.+|++|+.||+|++||+. .++..
T Consensus 77 ~~l~s~s~dg~v~vwd~~~~~~~~~-----~~~~~~~-~h~~~v~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 149 (437)
T 3gre_A 77 PYLITGSDQGVIKIWNLKEIIVGEV-----YSSSLTY-DCSSTVTQITMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEV 149 (437)
T ss_dssp CEEEEEETTSEEEEEEHHHHHTTCC-----CSCSEEE-ECSSCEEEEEECT-TSSEEEEEETTSEEEEEEEEEEEETTEE
T ss_pred CEEEEecCCceEEEeECcccccCcc-----cceeeec-cCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEEeccccCCcee
Confidence 999999999999999997511 100 1223333 5999999999999 77899999999999999996 33211
Q ss_pred CCCCCCCCccceEEEecccCceecccCCCC-CccceEEEE--EeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCC
Q 004468 184 PPAGSSHQECRNILLDLRCGAKRSLADPPK-QTLSLKSCD--ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (751)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~v~~i~--~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~ 260 (751)
..+. ......+...+. +...+.++. ++| ++.+|++|+.|+.|++||+++.+.+..+..
T Consensus 150 -----------~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---- 210 (437)
T 3gre_A 150 -----------KFLN---CECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLERLQIIEN---- 210 (437)
T ss_dssp -----------EEEE---EEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCEEEEEEC----
T ss_pred -----------eccc---cceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEcc----
Confidence 0000 001111111110 345567776 556 478999999999999999998764332210
Q ss_pred CCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
..|.. .|++++|+|++++|++++.|+.|++||+.+
T Consensus 211 --------------~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 245 (437)
T 3gre_A 211 --------------SPRHG-AVSSICIDEECCVLILGTTRGIIDIWDIRF 245 (437)
T ss_dssp --------------CGGGC-CEEEEEECTTSCEEEEEETTSCEEEEETTT
T ss_pred --------------CCCCC-ceEEEEECCCCCEEEEEcCCCeEEEEEcCC
Confidence 01223 699999999999999999999999999887
No 98
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=7.5e-27 Score=252.19 Aligned_cols=214 Identities=9% Similarity=0.048 Sum_probs=141.0
Q ss_pred ccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEE-EEEECCCc
Q 004468 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAE 118 (751)
Q Consensus 40 ~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l-~sgs~Dg~ 118 (751)
.+++.++++|.+.|++++|+|||++||+|+.|+ ++||++.++..+... +...+..++|.+. ++.+ ++++.|++
T Consensus 9 ~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~d~~ 82 (355)
T 3vu4_A 9 RNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ---EMRHLSKVRMLHR--TNYVAFVTGVKEV 82 (355)
T ss_dssp ----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE---ECSCCCEEEECTT--SSEEEEECSSTTE
T ss_pred cCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee---ecCCeEEEEEcCC--CCEEEEEECCccE
Confidence 345667789999999999999999999998875 789999887766554 2235888999988 4555 67888999
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCC-CCCCCCCCCCCccceEE
Q 004468 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG-SSCPPAGSSHQECRNIL 197 (751)
Q Consensus 119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~-~~~~~~~~~~~~~~~~l 197 (751)
|+|||+.++ +++..+. |...|.+++|++ + .++.+ .|+.|++||+.+. +....
T Consensus 83 v~iWd~~~~----------~~~~~~~-~~~~v~~v~~~~-~--~~~~~-~~~~i~i~d~~~~~~~~~~------------ 135 (355)
T 3vu4_A 83 VHIWDDVKK----------QDVSRIK-VDAPVKDLFLSR-E--FIVVS-YGDVISVFKFGNPWKRITD------------ 135 (355)
T ss_dssp EEEEETTTT----------EEEEEEE-CSSCEEEEEECS-S--EEEEE-ETTEEEEEESSTTCCBSSC------------
T ss_pred EEEEECCCC----------cEEEEEE-CCCceEEEEEcC-C--EEEEE-EcCEEEEEECCCCceeeEE------------
Confidence 999999864 4456665 677999999987 3 34343 4789999999887 32210
Q ss_pred EecccCceecccCCCCCccceEEEEEeCCCCcEEEE--EeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccC
Q 004468 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV--GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (751)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~s--gs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (751)
. ......+++++ .++++ |+.||.|++||+++............ .....|......
T Consensus 136 -------------~---~~~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~----~~~~~p~~~~~~ 192 (355)
T 3vu4_A 136 -------------D---IRFGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQ----QKAILGKGVLIK 192 (355)
T ss_dssp -------------C---EEEEEEEEEET---TEEEEEESSCTTCEEEEECCC----------------------CCEEEC
T ss_pred -------------e---ccCCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCcccccccccc----ccccCcccEEEE
Confidence 0 00334556776 45555 68999999999987542211100000 000001000113
Q ss_pred CccccceEEEEEcCCCCEEEEEeCCCc-EEEEECCC
Q 004468 276 GRSSLHLTHVTFSPNGEEVLLSYSGEH-VYLMDVNH 310 (751)
Q Consensus 276 g~~~~~vt~v~fspdg~~Ll~~s~d~~-I~lwdl~~ 310 (751)
+|.. .|++++|+|+|++|++++.|++ |+|||+.+
T Consensus 193 ~h~~-~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~ 227 (355)
T 3vu4_A 193 AHTN-PIKMVRLNRKSDMVATCSQDGTIIRVFKTED 227 (355)
T ss_dssp CCSS-CEEEEEECTTSSEEEEEETTCSEEEEEETTT
T ss_pred ccCC-ceEEEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 4554 6999999999999999999998 99999887
No 99
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=5.5e-28 Score=264.88 Aligned_cols=230 Identities=15% Similarity=0.116 Sum_probs=144.3
Q ss_pred CcEEEEEEC---CCCCEEEEEeCCCcEEEEeCCCC-------eEEEE-ecccCCcceEEEEEecCC--------------
Q 004468 51 GCVNAISWN---SKGSLLISGSDDTHINVWSYSSR-------KLLHS-IETGHSANVFCTKFVPET-------------- 105 (751)
Q Consensus 51 ~~V~~l~~s---~dg~~LaSgs~Dg~I~IWd~~~~-------~~~~~-l~~~h~~~V~~v~fsp~s-------------- 105 (751)
....++.|. +++..|++++.|+.|.+|+.... ..... ....|...+..+.|.+..
T Consensus 16 ~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (393)
T 4gq1_A 16 VRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVN 95 (393)
T ss_dssp CCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC---------
T ss_pred CCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCccee
Confidence 345667774 34444455556788999975311 11111 111344445555544321
Q ss_pred ----CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEec-------CCCCEEEEEeCCCcEEE
Q 004468 106 ----SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV-------GNPHVVWSASEDGTLRQ 174 (751)
Q Consensus 106 ----~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-------~~~~~l~s~s~Dg~I~i 174 (751)
.+.+|++|+.|++|+|||+..+.... ..++..+.+|.+.|++++|+| .++++|+|||.|++|++
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~-----~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~ 170 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIIT-----QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLII 170 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEE-----EEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEE
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccce-----eeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEE
Confidence 14689999999999999998642111 023456789999999999987 25689999999999999
Q ss_pred EecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCcccc
Q 004468 175 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC 254 (751)
Q Consensus 175 wDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~ 254 (751)
||++++..+ ..+. .+...|.+++|+|+++.+|++|+.|++|++||+++.+.....
T Consensus 171 Wd~~~~~~~-----------~~~~--------------~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~ 225 (393)
T 4gq1_A 171 WRLTDEGPI-----------LAGY--------------PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEEN 225 (393)
T ss_dssp EEEETTEEE-----------EEEE--------------ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-----
T ss_pred EECCCCcee-----------eeec--------------CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccc
Confidence 999876421 1111 255689999999976679999999999999999987644332
Q ss_pred CCCCCC--CCccccc-cc--cccccCCccccceEEEEEc-CCCCEEEEEeCCCcEEEEECCCC
Q 004468 255 QKRMSP--PPCVNYF-CP--MHLSEHGRSSLHLTHVTFS-PNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 255 ~~~~~~--~~~~~~~-~~--~~~~~~g~~~~~vt~v~fs-pdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
...... ..+.... .+ ......+|.. .+.++.|+ |+|+.|++++.|+.+++||+..+
T Consensus 226 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~ 287 (393)
T 4gq1_A 226 SQTELVKNPWLLTLNTLPLVNTCHSSGIAS-SLANVRWIGSDGSGILAMCKSGAWLRWNLFAN 287 (393)
T ss_dssp -----CSCCCSEEEESGGGC------CCSS-SCSEEEEETTTTCEEEEECTTSEEEEEEC---
T ss_pred cccCCcccceEEecccccceeeeecccccc-cceeeeeecCCCCEEEEEeCCCCEEEEECccC
Confidence 111100 0000000 00 0011123444 58889887 79999999999999999998873
No 100
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=1.2e-27 Score=261.21 Aligned_cols=190 Identities=18% Similarity=0.175 Sum_probs=145.1
Q ss_pred CCcEEEEeCCCCeEEEEecccCCcceEEEEEec-CCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCC-----ceeec
Q 004468 71 DTHINVWSYSSRKLLHSIETGHSANVFCTKFVP-ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP-----SALYQ 144 (751)
Q Consensus 71 Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp-~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~-----~~~~~ 144 (751)
++.++||++..++....+ .+|.+.|++++|+| + +++|++|+.||.|+|||+........ ..... .....
T Consensus 22 ~~~~~v~~~~~~~~~~~~-~~h~~~v~~~~~s~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~ 96 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVE-RIHGGGINTLDIEPVE--GRYMLSGGSDGVIVLYDLENSSRQSY--YTCKAVCSIGRDHPD 96 (408)
T ss_dssp HHHHHHHTEEECTTEEEC-CCCSSCEEEEEECTTT--CCEEEEEETTSCEEEEECCCCSSSSC--EEECEEEEECTTCTT
T ss_pred cCcceeeccccCcceeee-eccCCcEEEEEEecCC--CCEEEEEcCCCeEEEEECCCCcccce--Eeccccccccccccc
Confidence 456788888777666666 78999999999999 7 79999999999999999996532110 00000 00113
Q ss_pred ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEe
Q 004468 145 CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS 224 (751)
Q Consensus 145 ~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~s 224 (751)
+|...|.+++|+|+++.+|++++.||.|++||+++++.. ..+. +...+.++.++
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------------~~~~--------------~~~~~~~~~~~ 150 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA------------DVFN--------------FEETVYSHHMS 150 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE------------EEEE--------------CSSCEEEEEEC
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc------------eecc--------------CCCceeeeEee
Confidence 599999999999977789999999999999999886521 1110 34568888898
Q ss_pred CCC--CcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCE-EEEEeCCC
Q 004468 225 STR--PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEE-VLLSYSGE 301 (751)
Q Consensus 225 p~~--~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~-Ll~~s~d~ 301 (751)
|.. +.++++++.|+.|++||+++.+.+..+ .+|.. .|++++|+|++++ |++++.|+
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~--------------------~~~~~-~v~~~~~~~~~~~ll~~~~~dg 209 (408)
T 4a11_B 151 PVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL--------------------QGHRQ-EILAVSWSPRYDYILATASADS 209 (408)
T ss_dssp SSCSSCCEEEEEESSSSEEEEESSSSCCCEEE--------------------CCCCS-CEEEEEECSSCTTEEEEEETTS
T ss_pred cCCCCCcEEEEEcCCCeEEEEeCCCcceeeee--------------------cCCCC-cEEEEEECCCCCcEEEEEcCCC
Confidence 853 349999999999999999876543322 22333 5999999999995 88999999
Q ss_pred cEEEEECCCCC
Q 004468 302 HVYLMDVNHAG 312 (751)
Q Consensus 302 ~I~lwdl~~~~ 312 (751)
.|++||+.+..
T Consensus 210 ~i~i~d~~~~~ 220 (408)
T 4a11_B 210 RVKLWDVRRAS 220 (408)
T ss_dssp CEEEEETTCSS
T ss_pred cEEEEECCCCC
Confidence 99999998854
No 101
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=5.6e-27 Score=260.01 Aligned_cols=219 Identities=17% Similarity=0.264 Sum_probs=174.1
Q ss_pred EEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCC----------CeEEEEecccCCcceEEEEEecCCCCc-EEE
Q 004468 44 RELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSS----------RKLLHSIETGHSANVFCTKFVPETSDE-LVV 111 (751)
Q Consensus 44 ~~L~gH~~~V~~l~~s~d-g~~LaSgs~Dg~I~IWd~~~----------~~~~~~l~~~h~~~V~~v~fsp~s~~~-~l~ 111 (751)
..+.+|.+.|++++|+|+ +.+||+|+.||.|+|||+.+ ...+..+ .+|...|++++|+|+ +. +|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~--~~~~l~ 198 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPN--LNGYLL 198 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTT--STTEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCC--CCCeEE
Confidence 455689999999999997 78999999999999999976 5666677 799999999999999 55 999
Q ss_pred EEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCC
Q 004468 112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 191 (751)
Q Consensus 112 sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~ 191 (751)
+|+.||.|+|||+....... ....+...+.+|...|.+++|+|.++.+|++++.||.|++||+++.....
T Consensus 199 s~~~dg~i~vwd~~~~~~~~---~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~------- 268 (430)
T 2xyi_A 199 SASDDHTICLWDINATPKEH---RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK------- 268 (430)
T ss_dssp EECTTSCEEEEETTSCCBGG---GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS-------
T ss_pred EEeCCCeEEEEeCCCCCCCC---ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc-------
Confidence 99999999999998632110 00123566778999999999999888999999999999999999864110
Q ss_pred ccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccc
Q 004468 192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271 (751)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (751)
. +.....|...|++++|+|++..+|++|+.|+.|++||+++... ++..+
T Consensus 269 -~--------------~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~------------~~~~~---- 317 (430)
T 2xyi_A 269 -P--------------SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL------------KLHSF---- 317 (430)
T ss_dssp -C--------------SEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS------------CSEEE----
T ss_pred -c--------------eeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC------------CeEEe----
Confidence 0 0011135678999999997666899999999999999997431 11111
Q ss_pred cccCCccccceEEEEEcCCCC-EEEEEeCCCcEEEEECCC
Q 004468 272 LSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 272 ~~~~g~~~~~vt~v~fspdg~-~Ll~~s~d~~I~lwdl~~ 310 (751)
.+|.. .|++++|+|+++ .|++++.|+.|+|||+..
T Consensus 318 ---~~h~~-~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 318 ---ESHKD-EIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp ---ECCSS-CEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred ---ecCCC-CEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 22333 699999999996 588899999999999877
No 102
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.6e-27 Score=254.29 Aligned_cols=202 Identities=14% Similarity=0.116 Sum_probs=151.0
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCC
Q 004468 55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 134 (751)
Q Consensus 55 ~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~ 134 (751)
...+.+++.+||+|+.||+|+|||+.+++.+..+. ...|.++.|+|. +++|+.|++|++|+...... ..+.
T Consensus 41 ~~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~~~~-~~~~ 111 (343)
T 3lrv_A 41 NKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHPA-----IISRGPCNRLLLLYPGNQIT-ILDS 111 (343)
T ss_dssp CSSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCCS-----EEEECSTTEEEEEETTTEEE-EEET
T ss_pred hhhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCCc-----eEEecCCCeEEEEEccCceE-Eeec
Confidence 34456688999999999999999999999888873 567888888876 99999999999998763100 0000
Q ss_pred CCCCCceee-cccCCceeEEEEec-CCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCC
Q 004468 135 NAITPSALY-QCHTRRVKKLAVEV-GNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP 212 (751)
Q Consensus 135 ~~~~~~~~~-~~h~~~V~~l~~sp-~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 212 (751)
...+.+..+ ..|...|.+++|+| .++.+|++++.||+|++||+++++.. .+. ..
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~------------~~~------------~~ 167 (343)
T 3lrv_A 112 KTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQY------------IVH------------SA 167 (343)
T ss_dssp TTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEE------------EEE------------CC
T ss_pred CCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEE------------EEE------------ec
Confidence 001213333 36778999999999 13478999999999999999986521 000 11
Q ss_pred CCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCc-cccCCCCCCCCccccccccccccCCccccceEEEEEcCCC
Q 004468 213 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL-TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG 291 (751)
Q Consensus 213 ~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg 291 (751)
.+...+++++|+| ++.+|++|+.|+.|++||+++.+.. ..+. .+|.. +|++++|+|+|
T Consensus 168 ~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~-------------------~~h~~-~v~~l~fs~~g 226 (343)
T 3lrv_A 168 KSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFP-------------------VDEEA-KIKEVKFADNG 226 (343)
T ss_dssp CSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECC-------------------CCTTS-CEEEEEECTTS
T ss_pred CCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEe-------------------ccCCC-CEEEEEEeCCC
Confidence 1345699999999 5899999999999999999987543 2110 11433 69999999999
Q ss_pred CEEEEEeCCCcEEEEECCCC
Q 004468 292 EEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 292 ~~Ll~~s~d~~I~lwdl~~~ 311 (751)
.+|++++ ++.|+|||+.+.
T Consensus 227 ~~l~s~~-~~~v~iwd~~~~ 245 (343)
T 3lrv_A 227 YWMVVEC-DQTVVCFDLRKD 245 (343)
T ss_dssp SEEEEEE-SSBEEEEETTSS
T ss_pred CEEEEEe-CCeEEEEEcCCC
Confidence 9999999 559999999873
No 103
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.5e-27 Score=262.67 Aligned_cols=201 Identities=15% Similarity=0.165 Sum_probs=144.4
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCC
Q 004468 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (751)
Q Consensus 48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~ 127 (751)
.-...|.+|+|+|||+++||+|.|++|+ |...+ ..+ .+|...|++|+|+|+ | .++.+.+|+...
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~---~~l-~gh~~~v~~V~FsPd--g-------~~~~~~~~~~~~- 76 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA---KDI-NCNSKNLFHVKEFPL--E-------FENKLDFELAQQ- 76 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC---SCC-SSBGGGTEEEEEECC--C-------CCCTTTTSCCCS-
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccc---cee-cCCCccEEEEEECCC--C-------CcceEEEEeCCC-
Confidence 4457899999999999999999999999 75544 344 699999999999999 5 456555555432
Q ss_pred CCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceec
Q 004468 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (751)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (751)
..+..+ .|...|.+++|+| ++..|++++.||+|++||... .+..+. +
T Consensus 77 ----------~~~~~~-~~~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~----------------~l~~l~-~---- 123 (588)
T 2j04_A 77 ----------NGLLNS-QPVCYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK----------------MLTNLD-S---- 123 (588)
T ss_dssp ----------SCSSTT-SCSCCEEEEEECS-SSSCEEEEETTSCEEEEETTE----------------EEEECC-C----
T ss_pred ----------ceEeec-CCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCc----------------eeeecc-C----
Confidence 112222 4688999999999 778999999999999999432 111110 0
Q ss_pred ccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEE
Q 004468 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (751)
Q Consensus 208 ~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~f 287 (751)
..+.....|.+++||| ++++|++|+.||+|+|||+......... -..+..+ .....+|.. +|.+++|
T Consensus 124 --~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~------~i~l~ti---~~~~~gh~~-~V~sVaw 190 (588)
T 2j04_A 124 --KGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSIRKNSENTPE------FYFESSI---RLSDAGSKD-WVTHIVW 190 (588)
T ss_dssp --SSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEECCCCTTTCCC------CEEEEEE---ECSCTTCCC-CEEEEEE
T ss_pred --CCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEECCCCcccccc------ceeeeee---ecccccccc-cEEEEEE
Confidence 0000123689999999 5899999999999999999875310000 0001111 011133444 7999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCC
Q 004468 288 SPNGEEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 288 spdg~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
+||| |++++.|+.|++||+.+..
T Consensus 191 SPdg--Laass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 191 YEDV--LVAALSNNSVFSMTVSASS 213 (588)
T ss_dssp ETTE--EEEEETTCCEEEECCCSSS
T ss_pred cCCc--EEEEeCCCeEEEEECCCCc
Confidence 9999 8899999999999998854
No 104
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.95 E-value=1.5e-26 Score=253.97 Aligned_cols=253 Identities=15% Similarity=0.221 Sum_probs=195.4
Q ss_pred ccccccchhhh-cc-ccccEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCC-------eEEEEecccCCcce
Q 004468 27 NHSLQMHSSLV-RR-LSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSR-------KLLHSIETGHSANV 96 (751)
Q Consensus 27 ~~~l~~~~~~i-~~-~~~~~~L~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~-------~~~~~l~~~h~~~V 96 (751)
+..+.+|+... .+ .+....+.+|.+.|++++|+| ++++||+|+.||+|+|||+.++ ..+..+ .+|...|
T Consensus 56 ~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~-~~h~~~v 134 (402)
T 2aq5_A 56 GGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL-EGHTKRV 134 (402)
T ss_dssp SCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE-ECCSSCE
T ss_pred CCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEe-cCCCCeE
Confidence 45666766421 12 245667899999999999999 9999999999999999999887 456667 7999999
Q ss_pred EEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceee--cccCCceeEEEEecCCCCEEEEEeCCCcEEE
Q 004468 97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQ 174 (751)
Q Consensus 97 ~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~i 174 (751)
.+++|+|+. ..+|++|+.|+.|+|||+..+ +++..+ .+|...|.+++|+| ++.+|++++.||+|++
T Consensus 135 ~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i 202 (402)
T 2aq5_A 135 GIVAWHPTA-QNVLLSAGCDNVILVWDVGTG----------AAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRV 202 (402)
T ss_dssp EEEEECSSB-TTEEEEEETTSCEEEEETTTT----------EEEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEE
T ss_pred EEEEECcCC-CCEEEEEcCCCEEEEEECCCC----------CccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEE
Confidence 999999993 269999999999999999864 456777 78999999999999 6788999999999999
Q ss_pred EecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCcc-ceEEEEEeCCCCcEEEEE---eCCCeEEEEeCCCCCC
Q 004468 175 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL-SLKSCDISSTRPHLLLVG---GSDAFARLYDRRMLPP 250 (751)
Q Consensus 175 wDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~v~~i~~sp~~~~~l~sg---s~D~~IriwD~~~~~~ 250 (751)
||+++++.. ..+. ..|.. .+.++.|+|+ +.+|++| +.|+.|++||+++...
T Consensus 203 wd~~~~~~~--------------~~~~----------~~~~~~~~~~~~~~~~-~~~l~~g~~~~~d~~i~iwd~~~~~~ 257 (402)
T 2aq5_A 203 IEPRKGTVV--------------AEKD----------RPHEGTRPVHAVFVSE-GKILTTGFSRMSERQVALWDTKHLEE 257 (402)
T ss_dssp EETTTTEEE--------------EEEE----------CSSCSSSCCEEEECST-TEEEEEEECTTCCEEEEEEETTBCSS
T ss_pred EeCCCCcee--------------eeec----------cCCCCCcceEEEEcCC-CcEEEEeccCCCCceEEEEcCccccC
Confidence 999986521 1100 11222 4789999994 7899998 7999999999987643
Q ss_pred ccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCc-ceee--eecCCCcee
Q 004468 251 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGG-RAMR--YTVGDASKI 326 (751)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s-~d~~I~lwdl~~~~~-~~~~--~~~~~~~~~ 326 (751)
.. ... ...+.. .+.+++|+|++++|++++ .|+.|++||+.++.. .... +.+...+..
T Consensus 258 ~~------------~~~------~~~~~~-~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~ 318 (402)
T 2aq5_A 258 PL------------SLQ------ELDTSS-GVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRG 318 (402)
T ss_dssp CS------------EEE------ECCCCS-SCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSE
T ss_pred Cc------------eEE------eccCCC-ceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccc
Confidence 11 000 011222 489999999999997554 699999999998663 2222 234578889
Q ss_pred EEeCCCCCCc
Q 004468 327 MSFTPTLNGL 336 (751)
Q Consensus 327 ~~~sp~~~~~ 336 (751)
++|+|+...+
T Consensus 319 ~~~sp~~~~~ 328 (402)
T 2aq5_A 319 MGYMPKRGLE 328 (402)
T ss_dssp EEECCGGGSC
T ss_pred eEEecccccc
Confidence 9999976544
No 105
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.8e-26 Score=247.78 Aligned_cols=240 Identities=16% Similarity=0.206 Sum_probs=193.3
Q ss_pred cccccccchhhhccccccEEeccCCCcEEEEEECCC--CCEEEEEeCCCcEEEEeCCCCe--EEEEecccCCcceEEEEE
Q 004468 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK--GSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKF 101 (751)
Q Consensus 26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~d--g~~LaSgs~Dg~I~IWd~~~~~--~~~~l~~~h~~~V~~v~f 101 (751)
.+..+++|+....+.++...+.+|.+.|++++|+++ +++|++|+.||.|+|||+.+++ .+..+ .+|...|.+++|
T Consensus 31 ~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~ 109 (379)
T 3jrp_A 31 SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQW 109 (379)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEE
T ss_pred CCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeee-cCCCcceEEEEe
Confidence 467788888766677888999999999999999987 9999999999999999999887 56666 789999999999
Q ss_pred ecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecC------------CCCEEEEEeCC
Q 004468 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG------------NPHVVWSASED 169 (751)
Q Consensus 102 sp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~------------~~~~l~s~s~D 169 (751)
+|+..+.+|++++.|+.|++||+..... .....+..|...|.+++|+|. ++.+|++++.|
T Consensus 110 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 181 (379)
T 3jrp_A 110 APHEYGPLLLVASSDGKVSVVEFKENGT--------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD 181 (379)
T ss_dssp CCGGGCSEEEEEETTSEEEEEECCTTSC--------CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETT
T ss_pred CCCCCCCEEEEecCCCcEEEEecCCCCc--------eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCC
Confidence 9984358999999999999999986422 235567789999999999995 57899999999
Q ss_pred CcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC--CcEEEEEeCCCeEEEEeCCC
Q 004468 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--PHLLLVGGSDAFARLYDRRM 247 (751)
Q Consensus 170 g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~~l~sgs~D~~IriwD~~~ 247 (751)
|.|++||++++... ..+ +.....|...|.+++|+|++ +.+|++++.|+.|++||++.
T Consensus 182 g~i~i~d~~~~~~~-----------~~~----------~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 182 NLVKIWKYNSDAQT-----------YVL----------ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp SCEEEEEEETTTTE-----------EEE----------EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred CeEEEEEecCCCcc-----------eee----------EEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 99999999876421 000 11223467789999999954 79999999999999999987
Q ss_pred CCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468 248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
....... .. .....|.. .|++++|+|+|++|++++.|+.|++||+...
T Consensus 241 ~~~~~~~-----------~~----~~~~~~~~-~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 241 EQGPWKK-----------TL----LKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp TTSCCEE-----------EE----SSSSCCSS-CEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCcccee-----------ee----eccccCCC-cEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 5421100 00 00012323 5999999999999999999999999999864
No 106
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=2.8e-26 Score=254.60 Aligned_cols=214 Identities=18% Similarity=0.319 Sum_probs=176.1
Q ss_pred ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004468 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~ 106 (751)
+..+++|+ ..+.++..++.+|.+.|++++| ++++|++|+.||+|+|||+.+++.+..+ .+|...|.+++|++
T Consensus 152 dg~i~iwd--~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~--- 223 (435)
T 1p22_A 152 DNTIKIWD--KNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTL-IHHCEAVLHLRFNN--- 223 (435)
T ss_dssp SSCEEEEE--SSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEE-CCCCSCEEEEECCT---
T ss_pred CCeEEEEe--CCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEE-cCCCCcEEEEEEcC---
Confidence 45667775 3566788899999999999999 7899999999999999999999999998 79999999999964
Q ss_pred CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004468 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (751)
Q Consensus 107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~ 186 (751)
.+|++|+.|+.|++||+...... .....+.+|...|.+++| ++.+|++|+.||+|++||+++++..
T Consensus 224 -~~l~s~s~dg~i~vwd~~~~~~~-------~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~--- 289 (435)
T 1p22_A 224 -GMMVTCSKDRSIAVWDMASPTDI-------TLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFV--- 289 (435)
T ss_dssp -TEEEEEETTSCEEEEECSSSSCC-------EEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTTCCEE---
T ss_pred -CEEEEeeCCCcEEEEeCCCCCCc-------eeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCcCcEE---
Confidence 58999999999999999864211 223678899999999999 4578999999999999999886521
Q ss_pred CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccc
Q 004468 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (751)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~ 266 (751)
.....|...|.+++++ +.++++|+.|+.|++||+++++.+..+
T Consensus 290 ----------------------~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~------------ 332 (435)
T 1p22_A 290 ----------------------RTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVL------------ 332 (435)
T ss_dssp ----------------------EEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEE------------
T ss_pred ----------------------EEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEEEEE------------
Confidence 1112356778999995 469999999999999999986543322
Q ss_pred ccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
.+|.. .|++++| ++.+|++++.||.|++||+.+
T Consensus 333 --------~~h~~-~v~~~~~--~~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 333 --------EGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp --------CCCSS-CEEEEEC--CSSEEEEEETTSCEEEEEHHH
T ss_pred --------eCCcC-cEEEEEe--cCCEEEEEeCCCcEEEEECCC
Confidence 23433 5999998 789999999999999999765
No 107
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.3e-26 Score=252.50 Aligned_cols=208 Identities=10% Similarity=0.139 Sum_probs=161.8
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe---EEEEec--------------------------------------
Q 004468 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIE-------------------------------------- 89 (751)
Q Consensus 51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~---~~~~l~-------------------------------------- 89 (751)
.+|++++|+++|++|+++ .++.|++||+.+++ .+..+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578899999999977666 56799999998887 554442
Q ss_pred ---------------ccCCcceEEEEEecCCCCcEE-EEEECCCcEEEEECCCCCCCCCCCCCCCCceeec--ccCCcee
Q 004468 90 ---------------TGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRVK 151 (751)
Q Consensus 90 ---------------~~h~~~V~~v~fsp~s~~~~l-~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~V~ 151 (751)
.+|.+.|.+++|+|+ +++| ++|+.|+.|+|||+....+ .++..+. .|...|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~~l~~~~~~dg~v~iwd~~~~~~--------~~~~~~~~~~~~~~v~ 153 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSD--ESRLIACADSDKSLLVFDVDKTSK--------NVLKLRKRFCFSKRPN 153 (450)
T ss_dssp ----------------CCCCCEEEEEECTT--SSEEEEEEGGGTEEEEEEECSSSS--------SCEEEEEEEECSSCEE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCC--CCEEEEEECCCCeEEEEECcCCCC--------ceeeeeecccCCCCce
Confidence 134457999999999 7885 8999999999999982112 3456665 5778999
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCC--CCc
Q 004468 152 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST--RPH 229 (751)
Q Consensus 152 ~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~--~~~ 229 (751)
+++|+| ++.+|++|+.||.|++|++.++..... .+.....|...|++++|+|+ .+.
T Consensus 154 ~~~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~---------------------~~~~~~~h~~~v~~~~~sp~~~~~~ 211 (450)
T 2vdu_B 154 AISIAE-DDTTVIIADKFGDVYSIDINSIPEEKF---------------------TQEPILGHVSMLTDVHLIKDSDGHQ 211 (450)
T ss_dssp EEEECT-TSSEEEEEETTSEEEEEETTSCCCSSC---------------------CCCCSEECSSCEEEEEEEECTTSCE
T ss_pred EEEEcC-CCCEEEEEeCCCcEEEEecCCcccccc---------------------cceeeecccCceEEEEEcCCCCCCc
Confidence 999999 678999999999999999987653210 01112236678999999994 168
Q ss_pred EEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004468 230 LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (751)
Q Consensus 230 ~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~ 309 (751)
+|++|+.|+.|++||+++.+.+.. +. .+|.. .|++++|+ +|++|++++.|+.|+|||+.
T Consensus 212 ~l~s~~~d~~i~vwd~~~~~~~~~-------------~~------~~h~~-~v~~~~~s-d~~~l~s~~~d~~v~vwd~~ 270 (450)
T 2vdu_B 212 FIITSDRDEHIKISHYPQCFIVDK-------------WL------FGHKH-FVSSICCG-KDYLLLSAGGDDKIFAWDWK 270 (450)
T ss_dssp EEEEEETTSCEEEEEESCTTCEEE-------------EC------CCCSS-CEEEEEEC-STTEEEEEESSSEEEEEETT
T ss_pred EEEEEcCCCcEEEEECCCCceeee-------------ee------cCCCC-ceEEEEEC-CCCEEEEEeCCCeEEEEECC
Confidence 999999999999999987653321 11 23443 59999999 99999999999999999999
Q ss_pred CCC
Q 004468 310 HAG 312 (751)
Q Consensus 310 ~~~ 312 (751)
++.
T Consensus 271 ~~~ 273 (450)
T 2vdu_B 271 TGK 273 (450)
T ss_dssp TCC
T ss_pred CCc
Confidence 854
No 108
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.95 E-value=1.3e-25 Score=249.91 Aligned_cols=213 Identities=20% Similarity=0.284 Sum_probs=175.5
Q ss_pred ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004468 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~ 106 (751)
+..+++|+. .+.+++.++.+|.+.|++++|+ +++|++|+.||+|+|||+.+++.+..+ .+|...|.++.|.
T Consensus 138 dg~i~vwd~--~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~---- 208 (445)
T 2ovr_B 138 DNTLKVWSA--VTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTL-YGHTSTVRCMHLH---- 208 (445)
T ss_dssp TSCEEEEET--TTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEE----
T ss_pred CCcEEEEEC--CCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEE-CCCCCcEEEEEec----
Confidence 456666653 4567888999999999999997 679999999999999999999999998 7999999999996
Q ss_pred CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004468 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (751)
Q Consensus 107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~ 186 (751)
+..|++|+.|++|++||+..+ +++..+.+|...|.+++| ++.+|++|+.||+|++||+++++..
T Consensus 209 ~~~l~s~s~dg~i~~wd~~~~----------~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~--- 272 (445)
T 2ovr_B 209 EKRVVSGSRDATLRVWDIETG----------QCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCL--- 272 (445)
T ss_dssp TTEEEEEETTSEEEEEESSSC----------CEEEEEECCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEE---
T ss_pred CCEEEEEeCCCEEEEEECCCC----------cEEEEEcCCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEe---
Confidence 357999999999999999864 557888999999999999 4578899999999999999876421
Q ss_pred CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccc
Q 004468 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (751)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~ 266 (751)
.....|...|.+++| ++.++++|+.|+.|++||+++.+.+..+
T Consensus 273 ----------------------~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~------------ 315 (445)
T 2ovr_B 273 ----------------------HTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTL------------ 315 (445)
T ss_dssp ----------------------EEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEE------------
T ss_pred ----------------------EEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEE------------
Confidence 111236678999999 3679999999999999999987643322
Q ss_pred ccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
.+|.. .+.++.+ ++++|++++.|+.|++||+.++.
T Consensus 316 --------~~~~~-~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~ 350 (445)
T 2ovr_B 316 --------TGHQS-LTSGMEL--KDNILVSGNADSTVKIWDIKTGQ 350 (445)
T ss_dssp --------CCCCS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCC
T ss_pred --------cCCcc-cEEEEEE--eCCEEEEEeCCCeEEEEECCCCc
Confidence 22333 4777666 57799999999999999998854
No 109
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.94 E-value=2e-26 Score=249.75 Aligned_cols=207 Identities=14% Similarity=0.140 Sum_probs=162.3
Q ss_pred cCCCcEEEEEECCCCCEEEEE--eCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECC
Q 004468 48 GHQGCVNAISWNSKGSLLISG--SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (751)
Q Consensus 48 gH~~~V~~l~~s~dg~~LaSg--s~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~ 125 (751)
.+...|.+++|||||++||+| +.|++|+|||+.+++++..+ .|.+.|.+|+|+|+ +++|++++.| .+++|+..
T Consensus 131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~--~~~~~V~~v~fspd--g~~l~s~s~~-~~~~~~~~ 205 (365)
T 4h5i_A 131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI--ETRGEVKDLHFSTD--GKVVAYITGS-SLEVISTV 205 (365)
T ss_dssp CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE--ECSSCCCEEEECTT--SSEEEEECSS-CEEEEETT
T ss_pred CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe--CCCCceEEEEEccC--CceEEeccce-eEEEEEec
Confidence 355679999999999998755 47999999999999998887 47888999999999 8999999855 55666665
Q ss_pred CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC----cEEEEecCCCCCCCCCCCCCCccceEEEecc
Q 004468 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG----TLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (751)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg----~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~ 201 (751)
.+.. ........|...|.+++|+| ++.++++++.|+ ++++||+...... ..
T Consensus 206 ~~~~--------~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~-------------~~--- 260 (365)
T 4h5i_A 206 TGSC--------IARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTS-------------VL--- 260 (365)
T ss_dssp TCCE--------EEEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEE-------------EE---
T ss_pred cCcc--------eeeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceec-------------ce---
Confidence 4321 12234567999999999999 668888999887 6888988765311 00
Q ss_pred cCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccc
Q 004468 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 281 (751)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (751)
.......+...|++++|+| ++++|++|+.|+.|+|||+++++++.. +. .+|.. .
T Consensus 261 -----~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~-------------~~------~gH~~-~ 314 (365)
T 4h5i_A 261 -----RSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKI-------------FK------QAHSF-A 314 (365)
T ss_dssp -----EEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEE-------------ET------TSSSS-C
T ss_pred -----eeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEE-------------ec------CcccC-C
Confidence 0111223667899999999 589999999999999999998754322 11 34555 6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 282 vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
|++|+|||||++|++++.|++|+|||+..
T Consensus 315 V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 315 ITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 99999999999999999999999999975
No 110
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=1.6e-26 Score=253.31 Aligned_cols=282 Identities=11% Similarity=0.019 Sum_probs=175.6
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEE----ecccCCcceEEEEEecCC------CCcEEEEEECCC
Q 004468 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS----IETGHSANVFCTKFVPET------SDELVVSGAGDA 117 (751)
Q Consensus 48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~----l~~~h~~~V~~v~fsp~s------~~~~l~sgs~Dg 117 (751)
.|.+.+....+++++.+||+|+.|++|+|||..++..... ...+|.+.|++|+|+|.. ++++||||+.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 3444444455555677899999999999999988765332 237999999999999821 178999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004468 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (751)
Q Consensus 118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l 197 (751)
+|+|||+... .++..+..|...|.+++|+|+++.+|++++.||+|++||+++++................
T Consensus 167 tv~~Wd~~~~----------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~ 236 (393)
T 4gq1_A 167 TLIIWRLTDE----------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWL 236 (393)
T ss_dssp EEEEEEEETT----------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCS
T ss_pred eEEEEECCCC----------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceE
Confidence 9999999754 446677789999999999997777999999999999999998865432211111111111
Q ss_pred EecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCc
Q 004468 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (751)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 277 (751)
+...............+...+.++.|++.++..|++++.|+.|++||+...+....+.........+ .+.+...... .
T Consensus 237 ~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~-~ 314 (393)
T 4gq1_A 237 LTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPK-NLLPNVQGIS-L 314 (393)
T ss_dssp EEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEEC-S
T ss_pred EecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccE-EEcccccccc-c
Confidence 1111111111222345677899999986578999999999999999998776544332211111111 1111100000 1
Q ss_pred cccceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCCCc
Q 004468 278 SSLHLTHVTFSP--NGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPI 342 (751)
Q Consensus 278 ~~~~vt~v~fsp--dg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~ 342 (751)
....+. +.|+| ++.++++|+.|+.|+|||+.++........+...+..++|+|+.+.++.....
T Consensus 315 ~~~~~~-~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~ 380 (393)
T 4gq1_A 315 FPSLLG-ACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEG 380 (393)
T ss_dssp SCCSSC-CEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESS
T ss_pred cCccee-EEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 111233 34444 34456667789999999999988777777888899999999999888766433
No 111
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=2.1e-25 Score=246.65 Aligned_cols=212 Identities=12% Similarity=0.053 Sum_probs=164.1
Q ss_pred ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEec----ccCCcceEEEEEecCCCCcEEEEE
Q 004468 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE----TGHSANVFCTKFVPETSDELVVSG 113 (751)
Q Consensus 38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~----~~h~~~V~~v~fsp~s~~~~l~sg 113 (751)
.+++.+..+..+. .+.+++|+|++.++++++.|+.|++||+.+++.+..+. .+|.+.|.+++|+|+ +.+++++
T Consensus 111 ~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~s~ 187 (433)
T 3bws_A 111 ITHRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH--NELWVSQ 187 (433)
T ss_dssp CSEEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG--TEEEEEE
T ss_pred CcceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC--CEEEEEE
Confidence 3445666676654 45699999988888999999999999999988876331 478999999999998 7999999
Q ss_pred ECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCcc
Q 004468 114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (751)
Q Consensus 114 s~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~ 193 (751)
+.|+.|++||+... +.+..+..|...+.+++|+|++..++++++.|+.|++||+++++..
T Consensus 188 ~~d~~v~~~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~---------- 247 (433)
T 3bws_A 188 MQANAVHVFDLKTL----------AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEI---------- 247 (433)
T ss_dssp GGGTEEEEEETTTC----------CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEE----------
T ss_pred CCCCEEEEEECCCc----------eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEE----------
Confidence 99999999999864 4567777899999999999965555567778999999999876421
Q ss_pred ceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe--------CCCeEEEEeCCCCCCccccCCCCCCCCccc
Q 004468 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--------SDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (751)
Q Consensus 194 ~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs--------~D~~IriwD~~~~~~~~~~~~~~~~~~~~~ 265 (751)
... . ....+.+++|+|+ +.++++++ .|+.|++||+++.+.+...
T Consensus 248 ----~~~-----------~-~~~~~~~~~~~~~-g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~----------- 299 (433)
T 3bws_A 248 ----RKT-----------D-KIGLPRGLLLSKD-GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI----------- 299 (433)
T ss_dssp ----EEC-----------C-CCSEEEEEEECTT-SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-----------
T ss_pred ----EEe-----------c-CCCCceEEEEcCC-CCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-----------
Confidence 110 0 1234889999995 67888777 5889999999875432111
Q ss_pred cccccccccCCccccceEEEEEcCCCCEEE-EEeCCCcEEEEECCCC
Q 004468 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVL-LSYSGEHVYLMDVNHA 311 (751)
Q Consensus 266 ~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll-~~s~d~~I~lwdl~~~ 311 (751)
.+.. .+.+++|+|+|++|+ +++.++.|++||+.++
T Consensus 300 ----------~~~~-~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~ 335 (433)
T 3bws_A 300 ----------GPPG-NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK 335 (433)
T ss_dssp ----------EEEE-CEEEEEECSSTTEEEEEETTTTEEEEEETTTT
T ss_pred ----------cCCC-CcceEEECCCCCEEEEEecCCCEEEEEECCCC
Confidence 1112 488999999998665 5578999999999874
No 112
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.94 E-value=9.7e-26 Score=250.15 Aligned_cols=259 Identities=13% Similarity=0.166 Sum_probs=180.2
Q ss_pred cccccccchhhhcc---------ccccEEeccCC------------CcEEEEEECCCC--CEEEEEeCCCcEEEEeCCCC
Q 004468 26 VNHSLQMHSSLVRR---------LSQERELEGHQ------------GCVNAISWNSKG--SLLISGSDDTHINVWSYSSR 82 (751)
Q Consensus 26 ~~~~l~~~~~~i~~---------~~~~~~L~gH~------------~~V~~l~~s~dg--~~LaSgs~Dg~I~IWd~~~~ 82 (751)
.+..+++|+....+ .++..++.+|. +.|++|+|+|++ .+|++|+.|++|+|||+.++
T Consensus 48 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~ 127 (447)
T 3dw8_B 48 KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISER 127 (447)
T ss_dssp TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEE
T ss_pred CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccc
Confidence 45677777643222 33678899998 889999999998 89999999999999998764
Q ss_pred eEE---------------------------------------EEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEE
Q 004468 83 KLL---------------------------------------HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (751)
Q Consensus 83 ~~~---------------------------------------~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd 123 (751)
... ..+..+|...|.+++|+|+ +++|++| .|+.|+|||
T Consensus 128 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd 204 (447)
T 3dw8_B 128 DKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSD--YETYLSA-DDLRINLWH 204 (447)
T ss_dssp EEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTT--SSEEEEE-CSSEEEEEE
T ss_pred cCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCC--CCEEEEe-CCCeEEEEE
Confidence 432 1333689999999999998 8999998 799999999
Q ss_pred CCCCCCCCCCCCCCCCce-------eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004468 124 LSRFSGRGLDDNAITPSA-------LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (751)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~-------~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~ 196 (751)
+.... ..+. .+.+|...|.+++|+|+++.+|++|+.||+|++||+++++.+... ..
T Consensus 205 ~~~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--------~~ 267 (447)
T 3dw8_B 205 LEITD---------RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH--------SK 267 (447)
T ss_dssp TTEEE---------EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT--------CE
T ss_pred CCCCC---------ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce--------ee
Confidence 98421 1122 467899999999999955589999999999999999987642100 00
Q ss_pred EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC-CCCccccCCCCCCCCccccccccccccC
Q 004468 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (751)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (751)
.+...... ........+...|.+++|+| ++.+|++++. +.|++||+++ .+++..+.........+... . .
T Consensus 268 ~~~~~~~~-~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~---~---~ 338 (447)
T 3dw8_B 268 LFEEPEDP-SNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSL---Y---E 338 (447)
T ss_dssp EECCC------CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHH---H---H
T ss_pred EeccCCCc-cccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccc---c---c
Confidence 11000000 00000011224899999999 5899999999 9999999987 55443332110000000000 0 0
Q ss_pred CccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc
Q 004468 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG 313 (751)
Q Consensus 276 g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~ 313 (751)
...-..+..++|+|+|++|++++.|+.|+|||+.++..
T Consensus 339 ~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 339 NDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp TSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred ccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 00001244599999999999999999999999998653
No 113
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.94 E-value=3.2e-25 Score=245.90 Aligned_cols=243 Identities=19% Similarity=0.240 Sum_probs=187.5
Q ss_pred ccccccchhhh--------ccccccEEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeE-------EEEecc
Q 004468 27 NHSLQMHSSLV--------RRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKL-------LHSIET 90 (751)
Q Consensus 27 ~~~l~~~~~~i--------~~~~~~~~L~gH~~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~-------~~~l~~ 90 (751)
+..+++|+... ...++...+.+|.+.|++|+|+|++. +|++|+.||+|+||++..+.. ...+ .
T Consensus 150 dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~ 228 (430)
T 2xyi_A 150 SSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF-T 228 (430)
T ss_dssp SSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEE-C
T ss_pred CCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceee-c
Confidence 45677776543 23678899999999999999999998 999999999999999987322 3344 6
Q ss_pred cCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004468 91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG 170 (751)
Q Consensus 91 ~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg 170 (751)
+|...|.+++|+|.. +.+|++++.|+.|++||+..... ..++..+..|...|++++|+|++..+|++|+.||
T Consensus 229 ~h~~~v~~v~~~p~~-~~~l~s~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg 300 (430)
T 2xyi_A 229 GHTAVVEDVAWHLLH-ESLFGSVADDQKLMIWDTRNNNT-------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK 300 (430)
T ss_dssp CCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCSCS-------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred CCCCCEeeeEEeCCC-CCEEEEEeCCCeEEEEECCCCCC-------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCC
Confidence 899999999999954 78999999999999999986421 1456778899999999999997767899999999
Q ss_pred cEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC
Q 004468 171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 250 (751)
Q Consensus 171 ~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~ 250 (751)
+|++||++..... +.....|...|++++|+|++..+|++++.|+.|+|||++....
T Consensus 301 ~v~vwd~~~~~~~------------------------~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~ 356 (430)
T 2xyi_A 301 TVALWDLRNLKLK------------------------LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356 (430)
T ss_dssp EEEEEETTCTTSC------------------------SEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred eEEEEeCCCCCCC------------------------eEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence 9999999985421 1111236678999999997667899999999999999987432
Q ss_pred ccccCC-CCCCCCccccccccccccCCccccceEEEEEcCCCC-EEEEEeCCCcEEEEECCC
Q 004468 251 LTSCQK-RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 251 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~-~Ll~~s~d~~I~lwdl~~ 310 (751)
...... ...++..+..+ .+|.. .|++++|+|+++ +|++++.|+.|+||++..
T Consensus 357 ~~~~~~~~~~~~~~~~~~-------~~h~~-~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 357 EQSTEDAEDGPPELLFIH-------GGHTA-KISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CCCHHHHHHCCTTEEEEC-------CCCSS-CEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred ccCccccccCCcceEEEc-------CCCCC-CceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 110000 00011111111 23443 599999999999 888999999999999987
No 114
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.3e-24 Score=228.19 Aligned_cols=240 Identities=18% Similarity=0.192 Sum_probs=196.5
Q ss_pred cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC---eEEEEecccCCcceEEEEEe
Q 004468 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR---KLLHSIETGHSANVFCTKFV 102 (751)
Q Consensus 26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~---~~~~~l~~~h~~~V~~v~fs 102 (751)
.+..+++|+. ...+....+.+|.+.|++++|+|++++|++|+.|+.|++|++... +.+..+ .+|...|.+++|.
T Consensus 37 ~dg~v~vw~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~ 113 (313)
T 3odt_A 37 RDGTVRLWSK--DDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTL-IGHQGNVCSLSFQ 113 (313)
T ss_dssp TTSEEEEEEE--SSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEE-CCCSSCEEEEEEE
T ss_pred cCCcEEEEEC--CCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccch-hhcccCEEEEEec
Confidence 4667888875 556678889999999999999999999999999999999998654 556666 7899999999993
Q ss_pred cCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004468 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (751)
Q Consensus 103 p~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~ 182 (751)
+.+|++++.|+.|++||.. ..+..+..|...|.+++|.|.++.+|++++.||.|++||.....
T Consensus 114 ----~~~l~~~~~d~~i~~~d~~------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~- 176 (313)
T 3odt_A 114 ----DGVVISGSWDKTAKVWKEG------------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVI- 176 (313)
T ss_dssp ----TTEEEEEETTSEEEEEETT------------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEE-
T ss_pred ----CCEEEEEeCCCCEEEEcCC------------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceE-
Confidence 5799999999999999932 55788889999999999998777899999999999999943211
Q ss_pred CCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCC
Q 004468 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (751)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~ 262 (751)
. .....+...+.+++|+|+ +. +++++.|+.|++||+++.+.+..+
T Consensus 177 ---------------~----------~~~~~~~~~i~~~~~~~~-~~-~~~~~~dg~i~i~d~~~~~~~~~~-------- 221 (313)
T 3odt_A 177 ---------------K----------TFSGIHNDVVRHLAVVDD-GH-FISCSNDGLIKLVDMHTGDVLRTY-------- 221 (313)
T ss_dssp ---------------E----------EECSSCSSCEEEEEEEET-TE-EEEEETTSEEEEEETTTCCEEEEE--------
T ss_pred ---------------E----------EEeccCcccEEEEEEcCC-Ce-EEEccCCCeEEEEECCchhhhhhh--------
Confidence 0 001115678999999995 45 999999999999999876543322
Q ss_pred ccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCC
Q 004468 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334 (751)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~ 334 (751)
.+|.. .|++++|+|++ .|++++.|+.|++||+.++........+...+..++|+|+..
T Consensus 222 ------------~~~~~-~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~ 279 (313)
T 3odt_A 222 ------------EGHES-FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD 279 (313)
T ss_dssp ------------ECCSS-CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred ------------hcCCc-eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC
Confidence 22333 59999999999 689999999999999999876666666777888999999876
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=8e-25 Score=260.05 Aligned_cols=240 Identities=16% Similarity=0.197 Sum_probs=193.2
Q ss_pred cccccccchhhhccccccEEeccCCCcEEEEEECCC--CCEEEEEeCCCcEEEEeCCCCe--EEEEecccCCcceEEEEE
Q 004468 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK--GSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKF 101 (751)
Q Consensus 26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~d--g~~LaSgs~Dg~I~IWd~~~~~--~~~~l~~~h~~~V~~v~f 101 (751)
.+..+++|+..-.+.++..++.+|.+.|++++|+|+ +++|++|+.||+|+|||+.+++ .+..+ .+|...|.+++|
T Consensus 29 ~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~-~~h~~~V~~v~~ 107 (753)
T 3jro_A 29 SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQW 107 (753)
T ss_dssp TTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEE
T ss_pred CCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccc-cCCCCCeEEEEE
Confidence 467888888665677888999999999999999988 9999999999999999999886 56666 789999999999
Q ss_pred ecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecC------------CCCEEEEEeCC
Q 004468 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG------------NPHVVWSASED 169 (751)
Q Consensus 102 sp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~------------~~~~l~s~s~D 169 (751)
+|+..+.+|++|+.||.|++||+..... .....+.+|...|.+++|+|. ++.+|++|+.|
T Consensus 108 sp~~~~~~l~sgs~dg~I~vwdl~~~~~--------~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d 179 (753)
T 3jro_A 108 APHEYGPLLLVASSDGKVSVVEFKENGT--------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD 179 (753)
T ss_dssp CCGGGCSEEEEEETTSEEEEEECCSSSC--------CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETT
T ss_pred CCCCCCCEEEEEeCCCcEEEEEeecCCC--------cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECC
Confidence 9984358999999999999999986432 235567889999999999995 47889999999
Q ss_pred CcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC--CcEEEEEeCCCeEEEEeCCC
Q 004468 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--PHLLLVGGSDAFARLYDRRM 247 (751)
Q Consensus 170 g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~~l~sgs~D~~IriwD~~~ 247 (751)
|+|++||++++... .. .+.....|...|++++|+|++ +.+|++|+.|+.|++||+++
T Consensus 180 g~I~iwd~~~~~~~-----------~~----------~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 180 NLVKIWKYNSDAQT-----------YV----------LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp SCEEEEEEETTTTE-----------EE----------EEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred CeEEEEeccCCccc-----------ce----------eeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 99999999886421 00 011223467889999999964 79999999999999999987
Q ss_pred CCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468 248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
....... .. ....+|.. .|++++|+|+|++|++++.||.|++||+..+
T Consensus 239 ~~~~~~~-----------~~----~~~~~~~~-~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 239 EQGPWKK-----------TL----LKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp SSSCCBC-----------CB----SSSSCCSS-CCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCccee-----------EE----eccCCCCC-ceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 5421100 00 00012333 5999999999999999999999999999853
No 116
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.2e-24 Score=238.22 Aligned_cols=252 Identities=12% Similarity=0.090 Sum_probs=184.6
Q ss_pred cEEeccCCCcEEEEEECCCCCEE-EEEeCCCcEEEEeCC--CCeEEEEecc-cCCcceEEEEEecCCCCcEEEEEECCCc
Q 004468 43 ERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYS--SRKLLHSIET-GHSANVFCTKFVPETSDELVVSGAGDAE 118 (751)
Q Consensus 43 ~~~L~gH~~~V~~l~~s~dg~~L-aSgs~Dg~I~IWd~~--~~~~~~~l~~-~h~~~V~~v~fsp~s~~~~l~sgs~Dg~ 118 (751)
...+.+|.+.|++++|+|+|++| |+|+.||.|+|||+. ++..+..+.. .|...|.+++|+|+ +.+|++|+.|+.
T Consensus 95 ~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~~g~ 172 (450)
T 2vdu_B 95 GLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED--DTTVIIADKFGD 172 (450)
T ss_dssp -----CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT--SSEEEEEETTSE
T ss_pred CCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC--CCEEEEEeCCCc
Confidence 34556889999999999999996 899999999999998 7877777621 67799999999999 899999999999
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecC--CCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004468 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG--NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (751)
Q Consensus 119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~--~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~ 196 (751)
|++|++....... .+...+.+|...|.+++|+|+ ++.+|++|+.|++|++||+++++.. .
T Consensus 173 v~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~-----------~- 234 (450)
T 2vdu_B 173 VYSIDINSIPEEK------FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV-----------D- 234 (450)
T ss_dssp EEEEETTSCCCSS------CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE-----------E-
T ss_pred EEEEecCCccccc------ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee-----------e-
Confidence 9999998643210 134577899999999999994 1689999999999999999876522 0
Q ss_pred EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccc-ccc---
Q 004468 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP-MHL--- 272 (751)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--- 272 (751)
....+|...|.+++|+ ++.+|++|+.|+.|++||+++++.+..+..... +..+.. .+.
T Consensus 235 ------------~~~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 296 (450)
T 2vdu_B 235 ------------KWLFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSL----IKPYLNDQHLAPP 296 (450)
T ss_dssp ------------EECCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTTCCEEEEEECHHH----HGGGCCTTSBC--
T ss_pred ------------eeecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCCCcEeeeecchhh----hhhhhhhcccccc
Confidence 0122367889999999 579999999999999999998875544321100 000000 000
Q ss_pred ----ccCCccccceEEEEEcCCCCEEEEEe-CCCcEEEEEC--CCCC--cceeeeecCCCceeEEeCCC
Q 004468 273 ----SEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDV--NHAG--GRAMRYTVGDASKIMSFTPT 332 (751)
Q Consensus 273 ----~~~g~~~~~vt~v~fspdg~~Ll~~s-~d~~I~lwdl--~~~~--~~~~~~~~~~~~~~~~~sp~ 332 (751)
.........|.+++|+|++++|++++ .++.|+||++ ..+. .....+.....+..++|+|.
T Consensus 297 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~ 365 (450)
T 2vdu_B 297 RFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHND 365 (450)
T ss_dssp --------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETT
T ss_pred cccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCC
Confidence 00001123599999999999999999 8999999999 4432 11222223366778888883
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.92 E-value=1.1e-23 Score=229.55 Aligned_cols=184 Identities=16% Similarity=0.177 Sum_probs=140.6
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEE-EEEECCCcEEEEECCCCCCCCCCCCCCCCce
Q 004468 63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 141 (751)
Q Consensus 63 ~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l-~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~ 141 (751)
.++++++.|+.|++||+.+++.+..+ ..|. .+.+++|+|+ +++| ++++.|+.|++||+.++ +.+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~-~~~~-~~~~~~~s~d--g~~l~~~~~~d~~i~v~d~~~~----------~~~~ 68 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATI-PVGS-NPMGAVISPD--GTKVYVANAHSNDVSIIDTATN----------NVIA 68 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEE-ECSS-SEEEEEECTT--SSEEEEEEGGGTEEEEEETTTT----------EEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEe-ecCC-CcceEEECCC--CCEEEEECCCCCeEEEEECCCC----------eEEE
Confidence 47889999999999999999998888 5554 5899999999 6765 77889999999999864 4455
Q ss_pred eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEE
Q 004468 142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC 221 (751)
Q Consensus 142 ~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i 221 (751)
.+..+. .|.+++|+|++..++++++.|++|++||+.+++.. . .+. ....+.++
T Consensus 69 ~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~-----------~-~~~--------------~~~~~~~~ 121 (391)
T 1l0q_A 69 TVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA-----------G-TVK--------------TGKSPLGL 121 (391)
T ss_dssp EEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-----------E-EEE--------------CSSSEEEE
T ss_pred EEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEE-----------E-EEe--------------CCCCcceE
Confidence 665544 89999999955445567778899999999876521 0 110 12357899
Q ss_pred EEeCCCCcEE-EEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEE-EEeC
Q 004468 222 DISSTRPHLL-LVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVL-LSYS 299 (751)
Q Consensus 222 ~~sp~~~~~l-~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll-~~s~ 299 (751)
+|+|+ ++++ ++++.|+.|++||+++.+.+..+ ..+. .+..++|+|+|++|+ +++.
T Consensus 122 ~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~--------------------~~~~--~~~~~~~~~dg~~l~~~~~~ 178 (391)
T 1l0q_A 122 ALSPD-GKKLYVTNNGDKTVSVINTVTKAVINTV--------------------SVGR--SPKGIAVTPDGTKVYVANFD 178 (391)
T ss_dssp EECTT-SSEEEEEETTTTEEEEEETTTTEEEEEE--------------------ECCS--SEEEEEECTTSSEEEEEETT
T ss_pred EECCC-CCEEEEEeCCCCEEEEEECCCCcEEEEE--------------------ecCC--CcceEEECCCCCEEEEEeCC
Confidence 99996 5555 78888999999999876433221 1111 378999999999884 6667
Q ss_pred CCcEEEEECCC
Q 004468 300 GEHVYLMDVNH 310 (751)
Q Consensus 300 d~~I~lwdl~~ 310 (751)
++.|++||+.+
T Consensus 179 ~~~v~~~d~~~ 189 (391)
T 1l0q_A 179 SMSISVIDTVT 189 (391)
T ss_dssp TTEEEEEETTT
T ss_pred CCEEEEEECCC
Confidence 89999999877
No 118
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.92 E-value=3.4e-24 Score=228.50 Aligned_cols=265 Identities=7% Similarity=-0.001 Sum_probs=188.7
Q ss_pred cccccccchhhhcc-ccccEEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeC-CCCeEEEEeccc--CCcceEEEE
Q 004468 26 VNHSLQMHSSLVRR-LSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSY-SSRKLLHSIETG--HSANVFCTK 100 (751)
Q Consensus 26 ~~~~l~~~~~~i~~-~~~~~~L~gH~~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~-~~~~~~~~l~~~--h~~~V~~v~ 100 (751)
.+..+++|+..... ......+.+|.+.|++++|+|+++ +|++|+.||.|++||+ .+++. ..+ .+ |...|.+++
T Consensus 31 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~-~~~~~~~~v~~l~ 108 (342)
T 1yfq_A 31 WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QAL-TNNEANLGICRIC 108 (342)
T ss_dssp TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EEC-BSCCCCSCEEEEE
T ss_pred CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-Eec-cccCCCCceEEEE
Confidence 45677777754332 123456679999999999999999 9999999999999999 87755 455 67 999999999
Q ss_pred EecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC-
Q 004468 101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ- 179 (751)
Q Consensus 101 fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~- 179 (751)
|+| +.+|++++.|+.|++||+........ ....+++..+. |...|.+++|+| +. +++++.||.|++||+++
T Consensus 109 ~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~-~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~ 180 (342)
T 1yfq_A 109 KYG---DDKLIAASWDGLIEVIDPRNYGDGVI-AVKNLNSNNTK-VKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLC 180 (342)
T ss_dssp EET---TTEEEEEETTSEEEEECHHHHTTBCE-EEEESCSSSSS-SCCCEEEEEECS-SE--EEEEESTTEEEEEESSCC
T ss_pred eCC---CCEEEEEcCCCeEEEEcccccccccc-cccCCeeeEEe-eCCceEEEEecC-Cc--EEEEeCCCeEEEEECCcc
Confidence 999 37999999999999999985100000 00003345555 899999999998 33 88999999999999988
Q ss_pred CCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeC-CCCcEEEEEeCCCeEEEEeCCCC------CCcc
Q 004468 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS-TRPHLLLVGGSDAFARLYDRRML------PPLT 252 (751)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~~l~sgs~D~~IriwD~~~~------~~~~ 252 (751)
+.... .. ....+...+.+++|+| + +.++++++.|+.|++||++.. +...
T Consensus 181 ~~~~~-----------~~------------~~~~~~~~i~~i~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~ 236 (342)
T 1yfq_A 181 EDDNG-----------TI------------EESGLKYQIRDVALLPKE-QEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp TTCCC-----------EE------------EECSCSSCEEEEEECSGG-GCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred ccccc-----------ee------------eecCCCCceeEEEECCCC-CCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence 54210 00 0112456799999999 6 689999999999999999865 2221
Q ss_pred ccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeec-CCCceeEEeCC
Q 004468 253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTP 331 (751)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~-~~~~~~~~~sp 331 (751)
.+..... .....+|. ..|++++|+|++++|++++.|+.|++||+.++........+ ...+..++ |
T Consensus 237 ~~~~~~~-----------~~~~~~~~-~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~ 302 (342)
T 1yfq_A 237 AFRCHRL-----------NLKDTNLA-YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C 302 (342)
T ss_dssp EEECCCC-----------CTTCCSSC-CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E
T ss_pred eeecccc-----------cccccccc-eeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C
Confidence 1110000 00001122 26999999999999999999999999999986544444343 44555555 5
Q ss_pred CCCCccc
Q 004468 332 TLNGLEL 338 (751)
Q Consensus 332 ~~~~~~~ 338 (751)
+...+..
T Consensus 303 ~~~~l~s 309 (342)
T 1yfq_A 303 SDNILCL 309 (342)
T ss_dssp CSSEEEE
T ss_pred CCCeEEE
Confidence 5554433
No 119
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.92 E-value=1.2e-23 Score=225.85 Aligned_cols=266 Identities=14% Similarity=0.155 Sum_probs=193.9
Q ss_pred cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEE--ec
Q 004468 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF--VP 103 (751)
Q Consensus 26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~f--sp 103 (751)
.+..+++|+...........+.+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+.. .+|...|.+++| +|
T Consensus 62 ~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~ 139 (368)
T 3mmy_A 62 WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQI--AQHDAPVKTIHWIKAP 139 (368)
T ss_dssp TTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEEEECS
T ss_pred CCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceee--ccccCceEEEEEEeCC
Confidence 35678888765434455588999999999999999999999999999999999999887764 479999999999 66
Q ss_pred CCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCC
Q 004468 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (751)
Q Consensus 104 ~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~ 183 (751)
+ +.+|++|+.|+.|++||+... +++..+..|. .+.++.+.+ ..+++++.|+.+++||++.....
T Consensus 140 ~--~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~ 203 (368)
T 3mmy_A 140 N--YSCVMTGSWDKTLKFWDTRSS----------NPMMVLQLPE-RCYCADVIY---PMAVVATAERGLIVYQLENQPSE 203 (368)
T ss_dssp S--CEEEEEEETTSEEEEECSSCS----------SCSEEEECSS-CEEEEEEET---TEEEEEEGGGCEEEEECSSSCEE
T ss_pred C--CCEEEEccCCCcEEEEECCCC----------cEEEEEecCC-CceEEEecC---CeeEEEeCCCcEEEEEeccccch
Confidence 6 789999999999999999864 4566776654 566676654 47788999999999999875411
Q ss_pred CCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCC---CCcEEEEEeCCCeEEEEeCCCCCC---ccccCCC
Q 004468 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST---RPHLLLVGGSDAFARLYDRRMLPP---LTSCQKR 257 (751)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~---~~~~l~sgs~D~~IriwD~~~~~~---~~~~~~~ 257 (751)
+.. +... ....+.++.+.+. .+..+++++.|+.|++||++.... +..+...
T Consensus 204 -------------~~~--------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 260 (368)
T 3mmy_A 204 -------------FRR--------IESP--LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCH 260 (368)
T ss_dssp -------------EEE--------CCCS--CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECS
T ss_pred -------------hhh--------cccc--ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeee
Confidence 110 1111 2233445555442 123499999999999999987632 1111000
Q ss_pred CCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcc
Q 004468 258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLE 337 (751)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~ 337 (751)
... .......+| ...|++++|+|++++|++++.|+.|+|||+.++........+...+..++|+|+...+.
T Consensus 261 ~~~--------~~~~~~~~~-~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 331 (368)
T 3mmy_A 261 RSN--------GTNTSAPQD-IYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFA 331 (368)
T ss_dssp EEC------------CCCEE-ECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEE
T ss_pred ecc--------ccccccccc-ccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEE
Confidence 000 000000111 12599999999999999999999999999998766666666778889999999988776
Q ss_pred cCCC
Q 004468 338 LQPP 341 (751)
Q Consensus 338 ~~~~ 341 (751)
....
T Consensus 332 ~~s~ 335 (368)
T 3mmy_A 332 YASS 335 (368)
T ss_dssp EEEC
T ss_pred EEec
Confidence 6543
No 120
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.92 E-value=3.3e-24 Score=223.87 Aligned_cols=202 Identities=12% Similarity=0.063 Sum_probs=143.3
Q ss_pred cEEEEEECCC----CCEEEEEeC--------------------CCcEEEEeC-CCCeEEEEecccCCcceEEEEEec-CC
Q 004468 52 CVNAISWNSK----GSLLISGSD--------------------DTHINVWSY-SSRKLLHSIETGHSANVFCTKFVP-ET 105 (751)
Q Consensus 52 ~V~~l~~s~d----g~~LaSgs~--------------------Dg~I~IWd~-~~~~~~~~l~~~h~~~V~~v~fsp-~s 105 (751)
.|++|+|+|+ ++++++++. |+.|++|++ .+++.+..+ .+|...+..++|+| +.
T Consensus 113 ~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~-~~~~~~v~~l~fs~~~g 191 (356)
T 2w18_A 113 EIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ-FLMPPEETILTFAEVQG 191 (356)
T ss_dssp EEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEE-EECCCSSCEEEEEEEET
T ss_pred ceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeee-ccCCCceeeEEeeccCC
Confidence 5566677778 788887664 888888888 457777776 68888888888888 32
Q ss_pred CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccC---CceeEEEEecCCCCEE------------EEEeCCC
Q 004468 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT---RRVKKLAVEVGNPHVV------------WSASEDG 170 (751)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~---~~V~~l~~sp~~~~~l------------~s~s~Dg 170 (751)
++.+|+||+.|++|+|||+.++ ++++++.+|. ..|.+++|+| ++.++ ++|+.|+
T Consensus 192 ~~~~LaSgS~D~TIkIWDl~TG----------k~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~ 260 (356)
T 2w18_A 192 MQEALLGTTIMNNIVIWNLKTG----------QLLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVF 260 (356)
T ss_dssp STTEEEEEETTSEEEEEETTTC----------CEEEEEECCC---CCCEEEEEEE-TTEEEEEEC------------CCE
T ss_pred CCceEEEecCCCcEEEEECCCC----------cEEEEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCc
Confidence 3689999999999999999975 5578887654 4677889999 55654 6788999
Q ss_pred cEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC
Q 004468 171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 250 (751)
Q Consensus 171 ~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~ 250 (751)
+|++||..+++.. .++ .+..+.+|...+.+..++ +.++++|+.|++|+|||+.+++.
T Consensus 261 tIklWd~~tgk~l-----------~v~---------~~~~p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl~tGk~ 317 (356)
T 2w18_A 261 QLIVINPKTTLSV-----------GVM---------LYCLPPGQAGRFLEGDVK---DHCAAAILTSGTIAIWDLLLGQC 317 (356)
T ss_dssp EEEEEETTTTEEE-----------EEE---------EECCCTTCCCCEEEEEEE---TTEEEEEETTSCEEEEETTTCSE
T ss_pred EEEEEECCCCEEE-----------EEE---------EeeccCCCcceeEccccC---CCEEEEEcCCCcEEEEECCCCcE
Confidence 9999999877522 111 011122333334444444 56899999999999999998764
Q ss_pred ccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004468 251 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (751)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl 308 (751)
+..+ .+|....+..++|+|||++|++|+.|++|+|||+
T Consensus 318 l~tL--------------------~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 318 TALL--------------------PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEE--------------------CCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEe--------------------cCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 4332 2444434567999999999999999999999995
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.92 E-value=7.6e-23 Score=222.83 Aligned_cols=219 Identities=8% Similarity=0.111 Sum_probs=165.0
Q ss_pred cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecC
Q 004468 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (751)
Q Consensus 26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~L-aSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~ 104 (751)
.+..+++|+. .+.++++.+.+|.. +.+++|+|+|++| ++++.|++|++||+.+++.+..+ ..|. .|.+++|+|+
T Consensus 10 ~d~~v~v~d~--~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~-~~~~-~v~~~~~spd 84 (391)
T 1l0q_A 10 ESDNISVIDV--TSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV-PAGS-SPQGVAVSPD 84 (391)
T ss_dssp TTTEEEEEET--TTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE-ECSS-SEEEEEECTT
T ss_pred CCCEEEEEEC--CCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE-ECCC-CccceEECCC
Confidence 3566777764 45567778887754 8999999999976 67779999999999999998888 3343 8999999999
Q ss_pred CCCcEE-EEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCC
Q 004468 105 TSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (751)
Q Consensus 105 s~~~~l-~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~ 183 (751)
+++| ++++.|+.|++||+..+ +.+..+.. ...+.+++|+|++..++++++.|+.|++||+++++..
T Consensus 85 --g~~l~~~~~~~~~v~v~d~~~~----------~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 151 (391)
T 1l0q_A 85 --GKQVYVTNMASSTLSVIDTTSN----------TVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI 151 (391)
T ss_dssp --SSEEEEEETTTTEEEEEETTTT----------EEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred --CCEEEEEECCCCEEEEEECCCC----------eEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 6766 45667799999999864 33455554 4568999999955445578999999999999876521
Q ss_pred CCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCc
Q 004468 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (751)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~ 263 (751)
..+ . ....+.+++|+|++..++++++.|+.|++||+++.+....+.
T Consensus 152 -----------~~~---~------------~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------- 197 (391)
T 1l0q_A 152 -----------NTV---S------------VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-------- 197 (391)
T ss_dssp -----------EEE---E------------CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--------
T ss_pred -----------EEE---e------------cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--------
Confidence 011 0 123468999999643444778889999999998764322110
Q ss_pred cccccccccccCCccccceEEEEEcCCCCEEEEEe---CCCcEEEEECCC
Q 004468 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY---SGEHVYLMDVNH 310 (751)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s---~d~~I~lwdl~~ 310 (751)
+. ..+.+++|+|+|++|++++ .++.|++||+.+
T Consensus 198 -------------~~-~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~ 233 (391)
T 1l0q_A 198 -------------VE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT 233 (391)
T ss_dssp -------------CS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred -------------cC-CCccceEECCCCCEEEEEecCcCCCcEEEEECCC
Confidence 11 1488999999999999888 689999999877
No 122
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.92 E-value=1.8e-23 Score=218.21 Aligned_cols=219 Identities=16% Similarity=0.175 Sum_probs=128.7
Q ss_pred ccccccEEeccCCC-c---EEEEEECCCCC---EEEEEeCCCcEEEEeCCCC---eEEEEecccCCcceEEEEEecCCCC
Q 004468 38 RRLSQERELEGHQG-C---VNAISWNSKGS---LLISGSDDTHINVWSYSSR---KLLHSIETGHSANVFCTKFVPETSD 107 (751)
Q Consensus 38 ~~~~~~~~L~gH~~-~---V~~l~~s~dg~---~LaSgs~Dg~I~IWd~~~~---~~~~~l~~~h~~~V~~v~fsp~s~~ 107 (751)
..++++.+|+.-.+ | |.++.|-.-|- .+++++.+ .|++|++.++ ++++++ ..|..+|..|.|+|+. -
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~lw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~ 99 (356)
T 2w18_A 23 GNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACED-VVSLWKALDAWQWEKLYTW-HFAEVPVLQIVPVPDV-Y 99 (356)
T ss_dssp -CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEESS-EEEEEEESSSSBEEEEEEE-ECCSSCEEEECCCTTC-C
T ss_pred ceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEeccc-eEEEcccCCCccceeeEEE-eccCceeEEEEEcCcc-c
Confidence 45667777776554 3 55677765443 67777765 8999999988 888888 8999999999999986 3
Q ss_pred cEEEEEECCC-cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe--CCCcEEEEecCC-CCCC
Q 004468 108 ELVVSGAGDA-EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQ-GSSC 183 (751)
Q Consensus 108 ~~l~sgs~Dg-~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s--~Dg~I~iwDlr~-~~~~ 183 (751)
+++..+=..= .--|+-+..... +..........+|...|..+ + +++++.+++ .|++|++|++.. ++.
T Consensus 100 ~~~~~~~~~~~~~~v~sla~spd----~~~~~~~l~s~g~~~~v~~l---~-~g~lv~ss~~g~d~~V~~~~~s~dG~~- 170 (356)
T 2w18_A 100 NLVCVALGNLEIREIRALFCSSD----DESEKQVLLKSGNIKAVLGL---T-KRRLVSSSGTLSDQQVEVMTFAEDGGG- 170 (356)
T ss_dssp SCEEEEECSSSEEEEEEECC----------CCEEEEEEEEEEEEEEE---T-TTEEEEEESSSTTCEEEEEEECTTSCE-
T ss_pred ceeeeeeccccccceEEEEECCC----ccccccEEEeCCCeEEEEec---C-CCcEEEecccCCCCcEEEEEECCCCce-
Confidence 3443332211 112222221100 00001122223444444443 3 445554433 477777777744 221
Q ss_pred CCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeC--CCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCC
Q 004468 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS--TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 261 (751)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp--~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~ 261 (751)
+.....|...++.++|+| .++.+|++|+.|++|||||+.+++.+..+.
T Consensus 171 ------------------------~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~------ 220 (356)
T 2w18_A 171 ------------------------KENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMH------ 220 (356)
T ss_dssp ------------------------EEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEE------
T ss_pred ------------------------eeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEc------
Confidence 111112556677778877 346899999999999999999887544331
Q ss_pred CccccccccccccCCccccceEEEEEcCCCCEEEE------------EeCCCcEEEEECCC
Q 004468 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL------------SYSGEHVYLMDVNH 310 (751)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~------------~s~d~~I~lwdl~~ 310 (751)
..+ .+ ...+.+++|+|+|+++++ |+.|++|++||..+
T Consensus 221 -------g~~----~~-v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t 269 (356)
T 2w18_A 221 -------IDD----SY-QASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT 269 (356)
T ss_dssp -------CCC--------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred -------CCC----cc-eeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence 100 01 124888999999998755 44566666666655
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=8e-24 Score=226.98 Aligned_cols=223 Identities=9% Similarity=0.070 Sum_probs=169.3
Q ss_pred cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC---------CCeEEEEecccCCcce
Q 004468 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS---------SRKLLHSIETGHSANV 96 (751)
Q Consensus 26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~---------~~~~~~~l~~~h~~~V 96 (751)
.+..+++|+. .+.+.+.++. .+.|+++.|+|+ |++|+.|++|++|+.. +++.+..+..+|.+.|
T Consensus 56 ~Dg~v~iwd~--~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v 128 (343)
T 3lrv_A 56 EDGALHFTQL--KDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEI 128 (343)
T ss_dssp ETTEEEEEEE--SSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCE
T ss_pred CCCcEEEEEC--CCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCE
Confidence 4566777764 3344555555 567888999998 9999999999999665 5555666656888999
Q ss_pred EEEEEec--CCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceee-cccCCceeEEEEecCCCCEEEEEeCCCcEE
Q 004468 97 FCTKFVP--ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173 (751)
Q Consensus 97 ~~v~fsp--~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~ 173 (751)
.+++|+| + +++|++|+.|++|++||+..+ +++..+ ..|...|.+++|+| ++.+|++|+.||+|+
T Consensus 129 ~~~~~~~~~~--~~~l~s~s~dg~i~~wd~~~~----------~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~ 195 (343)
T 3lrv_A 129 IYMYGHNEVN--TEYFIWADNRGTIGFQSYEDD----------SQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILD 195 (343)
T ss_dssp EEEECCC-----CCEEEEEETTCCEEEEESSSS----------CEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEE
T ss_pred EEEEcCCCCC--CCEEEEEeCCCcEEEEECCCC----------cEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEE
Confidence 9999999 7 899999999999999999864 334444 34566899999999 778999999999999
Q ss_pred EEecCCCCCCCCCCCCCCccceEEEecccCceecccCCC-CCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCcc
Q 004468 174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP-KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT 252 (751)
Q Consensus 174 iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~ 252 (751)
+||+++++... .... .|...|++++|+| ++.+|++++ |+.|++||+++.+.+.
T Consensus 196 iwd~~~~~~~~------------------------~~~~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~~~~~~ 249 (343)
T 3lrv_A 196 VYNLSSPDQAS------------------------SRFPVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRKDVGTL 249 (343)
T ss_dssp EEESSCTTSCC------------------------EECCCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTSSTTCB
T ss_pred EEECCCCCCCc------------------------cEEeccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCCCCcce
Confidence 99999876320 1112 2678999999999 478999999 4599999999876443
Q ss_pred ccCCCCCCCCccccccccccccCCccccce--EEEEEcCCCCEEEEEeC-CCcEEEEECCCCC
Q 004468 253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHL--THVTFSPNGEEVLLSYS-GEHVYLMDVNHAG 312 (751)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v--t~v~fspdg~~Ll~~s~-d~~I~lwdl~~~~ 312 (751)
.+.. +. .|. ..+ .+++|+|+|++|++++. |+.|+||++....
T Consensus 250 ~~~~----------~~-------~~~-~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 250 AYPT----------YT-------IPE-FKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp SSCC----------CB-------C------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred eecc----------cc-------ccc-ccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 2210 00 000 012 46999999999999998 9999999997754
No 124
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.90 E-value=8e-23 Score=220.54 Aligned_cols=164 Identities=10% Similarity=0.094 Sum_probs=103.0
Q ss_pred EEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEE
Q 004468 76 VWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 155 (751)
Q Consensus 76 IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 155 (751)
||++.+...+..+ .+|...|.+++|+|+ +++|++|+.|+ ++|||+... . .....+...+..+++
T Consensus 3 i~s~~~~~~~~~~-~~h~~~V~~v~fs~d--g~~la~g~~~~-~~iw~~~~~----------~--~~~~~~~~~~~~~~~ 66 (355)
T 3vu4_A 3 LGSMITRNPIVPE-NHVSNPVTDYEFNQD--QSCLILSTLKS-FEIYNVHPV----------A--HIMSQEMRHLSKVRM 66 (355)
T ss_dssp -----------------CCCCCEEEECTT--SSEEEEECSSE-EEEEEETTE----------E--EEEEEECSCCCEEEE
T ss_pred cccccccCCcccc-ccCCCceEEEEECCC--CCEEEEEcCCE-EEEEecCCc----------c--eeeeeecCCeEEEEE
Confidence 5677777777666 789999999999999 89999988765 789998753 1 122223335888899
Q ss_pred ecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe
Q 004468 156 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG 235 (751)
Q Consensus 156 sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs 235 (751)
.+....++++++.|++|++||+++++.. ..+. +...|.+++|+++ .++++
T Consensus 67 ~~~~~~~~~~~~~d~~v~iWd~~~~~~~--------------~~~~------------~~~~v~~v~~~~~---~~~~~- 116 (355)
T 3vu4_A 67 LHRTNYVAFVTGVKEVVHIWDDVKKQDV--------------SRIK------------VDAPVKDLFLSRE---FIVVS- 116 (355)
T ss_dssp CTTSSEEEEECSSTTEEEEEETTTTEEE--------------EEEE------------CSSCEEEEEECSS---EEEEE-
T ss_pred cCCCCEEEEEECCccEEEEEECCCCcEE--------------EEEE------------CCCceEEEEEcCC---EEEEE-
Confidence 8855445567888999999999887521 1100 2347899999883 34443
Q ss_pred CCCeEEEEeCCCC-CCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEE--EeCCCcEEEEECCCC
Q 004468 236 SDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL--SYSGEHVYLMDVNHA 311 (751)
Q Consensus 236 ~D~~IriwD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~--~s~d~~I~lwdl~~~ 311 (751)
.|+.|++||+.+. +.+..+. . +...+++++ .++++ |+.+|.|++||+.++
T Consensus 117 ~~~~i~i~d~~~~~~~~~~~~--------------------~----~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~ 169 (355)
T 3vu4_A 117 YGDVISVFKFGNPWKRITDDI--------------------R----FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSS 169 (355)
T ss_dssp ETTEEEEEESSTTCCBSSCCE--------------------E----EEEEEEEET--TEEEEEESSCTTCEEEEECCC-
T ss_pred EcCEEEEEECCCCceeeEEec--------------------c----CCceEEEEc--cEEEEeCCCcCcEEEEEECCCC
Confidence 4789999999876 3332210 0 234566777 66666 467999999999883
No 125
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.6e-22 Score=224.36 Aligned_cols=203 Identities=10% Similarity=0.135 Sum_probs=155.5
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCc-----ceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004468 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA-----NVFCTKFVPETSDELVVSGAGDAEVRLF 122 (751)
Q Consensus 48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~-----~V~~v~fsp~s~~~~l~sgs~Dg~V~vw 122 (751)
+|.+.|.+++|||+|++||+++.||+|+|||... ++..+ . |.. .|.+++|+|+ |++|++|+.||+|+||
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l-~-~~~~~~~~sv~svafSPD--G~~LAsgs~DGtVkIW 156 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNL-D-SKGNLSSRTYHCFEWNPI--ESSIVVGNEDGELQFF 156 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEEC-C-CSSCSTTTCEEEEEECSS--SSCEEEEETTSEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeec-c-CCCccccccEEEEEEcCC--CCEEEEEcCCCEEEEE
Confidence 6688999999999999999999999999999644 55566 4 665 5999999999 8999999999999999
Q ss_pred ECCCCCCCCCCCCCCCCceee----cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004468 123 NLSRFSGRGLDDNAITPSALY----QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (751)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~----~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (751)
|+..+.... ..+-.+.++ .+|...|.+++|+| ++ +++++.|++|++||+.++.... ....+
T Consensus 157 d~~~~~l~~---~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~~~--------~~~tL- 221 (588)
T 2j04_A 157 SIRKNSENT---PEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSHQP--------VSRMI- 221 (588)
T ss_dssp ECCCCTTTC---CCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSSCC--------CEEEE-
T ss_pred ECCCCcccc---ccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCcccc--------ceeee-
Confidence 998642100 000024555 67889999999999 55 7899999999999998765210 00000
Q ss_pred ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcc
Q 004468 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (751)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 278 (751)
.+.|...|.+++|+ +.+|++++ ++.|++||+...+.. .+ ..||.
T Consensus 222 ------------~~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~--------------~~------~~gh~ 265 (588)
T 2j04_A 222 ------------QNASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSIS--------------SL------KTGSL 265 (588)
T ss_dssp ------------ECCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEE--------------EE------ECSCC
T ss_pred ------------cccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEE--------------EE------EcCCC
Confidence 01256789999999 37888887 699999999865421 11 02444
Q ss_pred ccceEEEEE--cCCCCEEEEEeCCCcEEEEECC
Q 004468 279 SLHLTHVTF--SPNGEEVLLSYSGEHVYLMDVN 309 (751)
Q Consensus 279 ~~~vt~v~f--spdg~~Ll~~s~d~~I~lwdl~ 309 (751)
. .|+.++| +||+..|++++.+|+ +||.++
T Consensus 266 ~-~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 266 E-NFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp S-CCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred c-eEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 4 5999999 999999999999999 999874
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.88 E-value=5.5e-21 Score=217.72 Aligned_cols=205 Identities=12% Similarity=0.125 Sum_probs=150.7
Q ss_pred EECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEEC--CCCCCCCCCC
Q 004468 57 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL--SRFSGRGLDD 134 (751)
Q Consensus 57 ~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~--~~~~~~~~~~ 134 (751)
.|+|++.++++++.|++|.+||..+++++.++..+|. +.+++|+|+ +++|++++.|++|++||+ .+.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spd--g~~l~v~~~d~~V~v~D~~~~t~------- 212 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSAS--GRYLLVIGRDARIDMIDLWAKEP------- 212 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTT--SCEEEEEETTSEEEEEETTSSSC-------
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCC--CCEEEEECCCCeEEEEECcCCCC-------
Confidence 3899999999999999999999999999999854555 899999999 899999999999999999 542
Q ss_pred CCCCCceeecccCCceeEEEEec----CCCCEEEEEe-CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceeccc
Q 004468 135 NAITPSALYQCHTRRVKKLAVEV----GNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 209 (751)
Q Consensus 135 ~~~~~~~~~~~h~~~V~~l~~sp----~~~~~l~s~s-~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 209 (751)
+.+..+. +...+..++|+| ++ +++++++ .+++|.+||..+.+.. ..+ ... .. ...
T Consensus 213 ---~~~~~i~-~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~~~-----------~~i-~~~--g~-~~~ 272 (543)
T 1nir_A 213 ---TKVAEIK-IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLEPK-----------QIV-STR--GM-TVD 272 (543)
T ss_dssp ---EEEEEEE-CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCCEE-----------EEE-ECC--EE-CSS
T ss_pred ---cEEEEEe-cCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccccccc-----------eee-ccc--Cc-ccC
Confidence 3456665 455689999999 66 5555555 6899999998876532 111 100 00 000
Q ss_pred CCCCC-ccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEc
Q 004468 210 DPPKQ-TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (751)
Q Consensus 210 ~~~~~-~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fs 288 (751)
....| ...+.++.++|+++.++++...++.|.+||..+.+.+.. ... .+ ...+..++|+
T Consensus 273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~-----------~~i--------~~-~~~~~~~~~s 332 (543)
T 1nir_A 273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV-----------TSI--------GA-APFLHDGGWD 332 (543)
T ss_dssp SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEE-----------EEE--------EC-CSSCCCEEEC
T ss_pred ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCccee-----------EEe--------cc-CcCccCceEC
Confidence 00001 236889999998778888889999999999987543210 000 01 1136789999
Q ss_pred CCCCEEEEEe-CCCcEEEEECCCCC
Q 004468 289 PNGEEVLLSY-SGEHVYLMDVNHAG 312 (751)
Q Consensus 289 pdg~~Ll~~s-~d~~I~lwdl~~~~ 312 (751)
|+|++|++++ .+++|.+||+.+++
T Consensus 333 pdg~~l~va~~~~~~v~v~D~~tg~ 357 (543)
T 1nir_A 333 SSHRYFMTAANNSNKVAVIDSKDRR 357 (543)
T ss_dssp TTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred CCCCEEEEEecCCCeEEEEECCCCe
Confidence 9999887665 58999999999864
No 127
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.86 E-value=1.2e-20 Score=208.40 Aligned_cols=245 Identities=12% Similarity=0.108 Sum_probs=184.4
Q ss_pred cccccchhhhccccccE-----EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEe
Q 004468 28 HSLQMHSSLVRRLSQER-----ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102 (751)
Q Consensus 28 ~~l~~~~~~i~~~~~~~-----~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fs 102 (751)
..+.+|+.. +.+..+ .+.+|.+.|++++|+++|+++++++.|+.|++||+.+++.+..+ ..|...+.+++|+
T Consensus 144 ~~i~~~d~~--~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~ 220 (433)
T 3bws_A 144 EGMDVLDIN--SGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATV-DLTGKWSKILLYD 220 (433)
T ss_dssp SSEEEEETT--TCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEE-ECSSSSEEEEEEE
T ss_pred CeEEEEECC--CCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEE-cCCCCCeeEEEEc
Confidence 445666532 233334 56789999999999999999999999999999999999988888 6899999999999
Q ss_pred cCCCCcEE-EEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe--------CCCcEE
Q 004468 103 PETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--------EDGTLR 173 (751)
Q Consensus 103 p~s~~~~l-~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s--------~Dg~I~ 173 (751)
|+ +.++ ++++.|+.|++||+..+ +.+..+.. ...+.+++|+| ++..+++++ .||.|+
T Consensus 221 ~~--~~~l~~~~~~~~~i~~~d~~~~----------~~~~~~~~-~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~ 286 (433)
T 3bws_A 221 PI--RDLVYCSNWISEDISVIDRKTK----------LEIRKTDK-IGLPRGLLLSK-DGKELYIAQFSASNQESGGGRLG 286 (433)
T ss_dssp TT--TTEEEEEETTTTEEEEEETTTT----------EEEEECCC-CSEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEE
T ss_pred CC--CCEEEEEecCCCcEEEEECCCC----------cEEEEecC-CCCceEEEEcC-CCCEEEEEECCCCccccCCCeEE
Confidence 99 6666 55568999999999864 33455554 44589999999 556777777 589999
Q ss_pred EEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccc
Q 004468 174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253 (751)
Q Consensus 174 iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~ 253 (751)
+||+++++.. .. . .+...+.+++|+|++..++++++.|+.|++||+.+.+.+..
T Consensus 287 ~~d~~~~~~~-----------~~-~--------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~ 340 (433)
T 3bws_A 287 IYSMDKEKLI-----------DT-I--------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS 340 (433)
T ss_dssp EEETTTTEEE-----------EE-E--------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEECCCCcEE-----------ee-c--------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE
Confidence 9999876421 00 0 12346788999996545777889999999999986543221
Q ss_pred cCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC---------------CCcEEEEECCCCCcceeee
Q 004468 254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---------------GEHVYLMDVNHAGGRAMRY 318 (751)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~---------------d~~I~lwdl~~~~~~~~~~ 318 (751)
+. + ...+.+++|+|+|++|++++. ||.|++||+.+++.. ..+
T Consensus 341 ~~---------------------~-~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~-~~~ 397 (433)
T 3bws_A 341 IP---------------------V-FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK-EFW 397 (433)
T ss_dssp EE---------------------C-SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE-EEE
T ss_pred ec---------------------C-CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE-EEe
Confidence 10 1 124889999999999998877 469999999885433 333
Q ss_pred ecCCCceeEEeCCCCCCccc
Q 004468 319 TVGDASKIMSFTPTLNGLEL 338 (751)
Q Consensus 319 ~~~~~~~~~~~sp~~~~~~~ 338 (751)
.....+..++|+|+.+.+..
T Consensus 398 ~~~~~~~~~~~s~dg~~l~~ 417 (433)
T 3bws_A 398 EAGNQPTGLDVSPDNRYLVI 417 (433)
T ss_dssp ECSSSEEEEEECTTSCEEEE
T ss_pred cCCCCCceEEEcCCCCEEEE
Confidence 44566788999998766543
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.86 E-value=2.4e-20 Score=205.58 Aligned_cols=220 Identities=9% Similarity=0.035 Sum_probs=160.9
Q ss_pred cccccccchh--hhccccccEEeccCCCcEEEEEECC--------------CCCEEEEEeCC------CcEEEEeCCCCe
Q 004468 26 VNHSLQMHSS--LVRRLSQERELEGHQGCVNAISWNS--------------KGSLLISGSDD------THINVWSYSSRK 83 (751)
Q Consensus 26 ~~~~l~~~~~--~i~~~~~~~~L~gH~~~V~~l~~s~--------------dg~~LaSgs~D------g~I~IWd~~~~~ 83 (751)
++..+++|+. ...+......|.+|...|..+++++ .+..|+.++.+ +.|++||+.. .
T Consensus 91 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~ 169 (415)
T 2hqs_A 91 YNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-Y 169 (415)
T ss_dssp EEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-C
T ss_pred EEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-C
Confidence 4447788876 4444333467899999988888775 26677777654 7999999974 4
Q ss_pred EEEEecccCCcceEEEEEecCCCCcEEEEEECCC---cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCC
Q 004468 84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA---EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP 160 (751)
Q Consensus 84 ~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg---~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~ 160 (751)
.+..+ .+|...|.+++|+|+ |++|++++.|+ .|++||+.++ + ...+..|...+.+++|+|+ +
T Consensus 170 ~~~~l-~~~~~~v~~~~~Spd--g~~la~~s~~~~~~~i~~~d~~tg----------~-~~~l~~~~~~~~~~~~spd-g 234 (415)
T 2hqs_A 170 NQFVV-HRSPQPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANG----------A-VRQVASFPRHNGAPAFSPD-G 234 (415)
T ss_dssp SCEEE-EEESSCEEEEEECTT--SSEEEEEECTTSSCEEEEEETTTC----------C-EEEEECCSSCEEEEEECTT-S
T ss_pred CCEEE-eCCCCcceeeEEcCC--CCEEEEEEecCCCcEEEEEECCCC----------c-EEEeecCCCcccCEEEcCC-C
Confidence 45666 689999999999999 89999999885 9999999864 2 3456678889999999994 5
Q ss_pred CEEE-EEeCCCc--EEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeC-
Q 004468 161 HVVW-SASEDGT--LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS- 236 (751)
Q Consensus 161 ~~l~-s~s~Dg~--I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~- 236 (751)
+.|+ +++.|+. |++||+++++.. ....+...+.+++|+|+ +++|++++.
T Consensus 235 ~~la~~~~~~g~~~i~~~d~~~~~~~--------------------------~l~~~~~~~~~~~~spd-g~~l~~~s~~ 287 (415)
T 2hqs_A 235 SKLAFALSKTGSLNLYVMDLASGQIR--------------------------QVTDGRSNNTEPTWFPD-SQNLAFTSDQ 287 (415)
T ss_dssp SEEEEEECTTSSCEEEEEETTTCCEE--------------------------ECCCCSSCEEEEEECTT-SSEEEEEECT
T ss_pred CEEEEEEecCCCceEEEEECCCCCEE--------------------------eCcCCCCcccceEECCC-CCEEEEEECC
Confidence 5554 7777765 999999876411 11124457889999995 777877776
Q ss_pred CC--eEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCC---CcEEEEECCC
Q 004468 237 DA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNH 310 (751)
Q Consensus 237 D~--~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d---~~I~lwdl~~ 310 (751)
++ .|++||+.+.+... + ..+ ...+.+++|+|||++|++++.+ ..|++||+.+
T Consensus 288 ~g~~~i~~~d~~~~~~~~--------------l-------~~~-~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~ 344 (415)
T 2hqs_A 288 AGRPQVYKVNINGGAPQR--------------I-------TWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT 344 (415)
T ss_dssp TSSCEEEEEETTSSCCEE--------------C-------CCS-SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred CCCcEEEEEECCCCCEEE--------------E-------ecC-CCcccCeEECCCCCEEEEEECcCCceEEEEEECCC
Confidence 44 67778887654211 0 001 1148899999999999988764 5899999877
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.85 E-value=2.6e-19 Score=197.26 Aligned_cols=237 Identities=11% Similarity=0.089 Sum_probs=179.3
Q ss_pred cccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCC---cEEEEeCCCCeEEEEecccCCcceEEEEEecC
Q 004468 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDT---HINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (751)
Q Consensus 28 ~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg---~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~ 104 (751)
..+.+|+.. ....+.|.+|.+.|.+++|+|+|++||+++.|+ .|++||+.+++.. .+ ..|.+.+.+++|+|+
T Consensus 159 ~~i~i~d~~---g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l-~~~~~~~~~~~~spd 233 (415)
T 2hqs_A 159 YELRVSDYD---GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QV-ASFPRHNGAPAFSPD 233 (415)
T ss_dssp EEEEEEETT---SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EE-ECCSSCEEEEEECTT
T ss_pred ceEEEEcCC---CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Ee-ecCCCcccCEEEcCC
Confidence 567777653 345688899999999999999999999999885 9999999988775 34 578889999999999
Q ss_pred CCCcEEE-EEECCCc--EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeC-CC--cEEEEecC
Q 004468 105 TSDELVV-SGAGDAE--VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-DG--TLRQHDFR 178 (751)
Q Consensus 105 s~~~~l~-sgs~Dg~--V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~-Dg--~I~iwDlr 178 (751)
|++|+ +++.|+. |++||+.++ ....+..|...+.+++|+| +++.|++++. ++ .|.+||+.
T Consensus 234 --g~~la~~~~~~g~~~i~~~d~~~~-----------~~~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~ 299 (415)
T 2hqs_A 234 --GSKLAFALSKTGSLNLYVMDLASG-----------QIRQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNIN 299 (415)
T ss_dssp --SSEEEEEECTTSSCEEEEEETTTC-----------CEEECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETT
T ss_pred --CCEEEEEEecCCCceEEEEECCCC-----------CEEeCcCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECC
Confidence 78777 7776665 999999863 2456777889999999999 5676766665 55 57777877
Q ss_pred CCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC---CeEEEEeCCCCCCccccC
Q 004468 179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQ 255 (751)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D---~~IriwD~~~~~~~~~~~ 255 (751)
+++.. .+ ..+...+.+++|+|+ +++|++++.+ ..|++||+.+.+...
T Consensus 300 ~~~~~-----------------------~l---~~~~~~~~~~~~spd-G~~l~~~~~~~g~~~i~~~d~~~~~~~~--- 349 (415)
T 2hqs_A 300 GGAPQ-----------------------RI---TWEGSQNQDADVSSD-GKFMVMVSSNGGQQHIAKQDLATGGVQV--- 349 (415)
T ss_dssp SSCCE-----------------------EC---CCSSSEEEEEEECTT-SSEEEEEEECSSCEEEEEEETTTCCEEE---
T ss_pred CCCEE-----------------------EE---ecCCCcccCeEECCC-CCEEEEEECcCCceEEEEEECCCCCEEE---
Confidence 65411 00 112346788999995 7888877764 689999998754211
Q ss_pred CCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCC---cEEEEECCCCCcceeeeecCCCceeEEeCCC
Q 004468 256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (751)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~---~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~ 332 (751)
+ ..+. .+.+++|+|||++|++++.++ .|++||+.. +.......+...+..++|+|.
T Consensus 350 -----------l-------~~~~--~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g-~~~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 350 -----------L-------SSTF--LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG-RFKARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp -----------C-------CCSS--SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS-CCEEECCCSSSEEEEEEECCC
T ss_pred -----------e-------cCCC--CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC-CcEEEeeCCCCCCcCCccccc
Confidence 0 1111 488999999999999988876 899999986 444455556677888999997
Q ss_pred CC
Q 004468 333 LN 334 (751)
Q Consensus 333 ~~ 334 (751)
..
T Consensus 409 ~~ 410 (415)
T 2hqs_A 409 LH 410 (415)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 130
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.84 E-value=4.3e-19 Score=210.34 Aligned_cols=222 Identities=9% Similarity=0.017 Sum_probs=151.7
Q ss_pred CCcEEEEEECCCCCEEEEEeC-CC-----cEEEEeCCCCeEEEEecccCC------------------------cceEEE
Q 004468 50 QGCVNAISWNSKGSLLISGSD-DT-----HINVWSYSSRKLLHSIETGHS------------------------ANVFCT 99 (751)
Q Consensus 50 ~~~V~~l~~s~dg~~LaSgs~-Dg-----~I~IWd~~~~~~~~~l~~~h~------------------------~~V~~v 99 (751)
...|++++|||||++||+++. |+ .|.+||+.+++....+ ..+. ..|.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhcccccccccchhhhhhhhhhhccccCccee
Confidence 457999999999999999998 88 8999999998876665 3433 338999
Q ss_pred EEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 004468 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (751)
Q Consensus 100 ~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~ 179 (751)
+|+|+ |++|++++. +.|++||+..+.. .....+..|...+..++|+| +++.|+.++ ++.|++||+.+
T Consensus 115 ~~SpD--g~~l~~~~~-~~i~~~d~~~~~~--------~~~~~l~~~~~~~~~~~~SP-DG~~la~~~-~~~i~~~d~~~ 181 (741)
T 2ecf_A 115 QWSPD--AQRLLFPLG-GELYLYDLKQEGK--------AAVRQLTHGEGFATDAKLSP-KGGFVSFIR-GRNLWVIDLAS 181 (741)
T ss_dssp EECTT--SSEEEEEET-TEEEEEESSSCST--------TSCCBCCCSSSCEEEEEECT-TSSEEEEEE-TTEEEEEETTT
T ss_pred EECCC--CCEEEEEeC-CcEEEEECCCCCc--------ceEEEcccCCcccccccCCC-CCCEEEEEe-CCcEEEEecCC
Confidence 99999 899999886 9999999986410 02445667888899999999 668887777 46999999987
Q ss_pred CCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC---------------------
Q 004468 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA--------------------- 238 (751)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~--------------------- 238 (751)
++.......... .+.... ...+. ......+.+++|+|+ +++|++++.|+
T Consensus 182 g~~~~~~~~~~~---~~~~g~----~~~v~--~~~~~~~~~~~~SpD-g~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~ 251 (741)
T 2ecf_A 182 GRQMQLTADGST---TIGNGI----AEFVA--DEEMDRHTGYWWAPD-DSAIAYARIDESPVPVQKRYEVYADRTDVIEQ 251 (741)
T ss_dssp TEEEECCCCCCS---SEEESC----CCHHH--HHHSCCCCSEEECTT-SSCEEEEEEECTTSCEEEEEEECSSCEEEEEE
T ss_pred CCEEEeccCCcc---ceeccc----cceee--eeccccccceEECCC-CCEEEEEEEcCCCCceEecCCCCCCcccceEe
Confidence 652211000000 000000 00000 000112577999995 78888887665
Q ss_pred ------------eEEEEeCCC-CCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC-----C
Q 004468 239 ------------FARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-----G 300 (751)
Q Consensus 239 ------------~IriwD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-----d 300 (751)
.|++||+.+ .+..... .. ..+.. .+..++| |||++|++++. +
T Consensus 252 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~-------------~~-----~~~~~-~~~~~~~-pDg~~l~~~~~~~~~~~ 311 (741)
T 2ecf_A 252 RYPAAGDANVQVKLGVISPAEQAQTQWID-------------LG-----KEQDI-YLARVNW-RDPQHLSFQRQSRDQKK 311 (741)
T ss_dssp ECCBTTSCCCEEEEEEECSSTTCCCEEEC-------------CC-----SCSSE-EEEEEEE-EETTEEEEEEEETTSSE
T ss_pred ecCCCCCCCCeeEEEEEECCCCCceEEec-------------CC-----CCcce-EEEEEEe-CCCCEEEEEEecccCCe
Confidence 788888876 5422110 00 01222 5899999 99999997764 5
Q ss_pred CcEEEEECCCCCcce
Q 004468 301 EHVYLMDVNHAGGRA 315 (751)
Q Consensus 301 ~~I~lwdl~~~~~~~ 315 (751)
..|++||+.++....
T Consensus 312 ~~i~~~d~~~g~~~~ 326 (741)
T 2ecf_A 312 LDLVEVTLASNQQRV 326 (741)
T ss_dssp EEEEEEETTTCCEEE
T ss_pred EEEEEEECCCCceEE
Confidence 689999999865433
No 131
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.83 E-value=5.7e-19 Score=217.44 Aligned_cols=263 Identities=10% Similarity=-0.002 Sum_probs=168.6
Q ss_pred ccEEeccCCCcEEEEEECCCCCEEEEEeCC------CcEEEEeCCCCeEEEEecccCCcce-------EEEEEecCCCCc
Q 004468 42 QERELEGHQGCVNAISWNSKGSLLISGSDD------THINVWSYSSRKLLHSIETGHSANV-------FCTKFVPETSDE 108 (751)
Q Consensus 42 ~~~~L~gH~~~V~~l~~s~dg~~LaSgs~D------g~I~IWd~~~~~~~~~l~~~h~~~V-------~~v~fsp~s~~~ 108 (751)
..+.|.+|.+.|.+++|||||++||+++.+ ..|.+|++.+++ ...+ ..|...+ .+++|+|+ |+
T Consensus 44 ~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~l-t~~~~~~~~~~~~~~~~~~SpD--g~ 119 (1045)
T 1k32_A 44 STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRI-TYFSGKSTGRRMFTDVAGFDPD--GN 119 (1045)
T ss_dssp CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEEC-CCCCEEEETTEECSEEEEECTT--CC
T ss_pred cEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEc-ccCCCcccccccccccccCCCC--CE
Confidence 456788999999999999999999988654 479999998876 4556 7898888 99999999 67
Q ss_pred EEEEEECC------CcEEEEECCCCCCCCCCCCC---------------------------------------CCCceee
Q 004468 109 LVVSGAGD------AEVRLFNLSRFSGRGLDDNA---------------------------------------ITPSALY 143 (751)
Q Consensus 109 ~l~sgs~D------g~V~vwd~~~~~~~~~~~~~---------------------------------------~~~~~~~ 143 (751)
++++++.+ ..|.+|++..+....+.... ......+
T Consensus 120 ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l 199 (1045)
T 1k32_A 120 LIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI 199 (1045)
T ss_dssp EEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE
T ss_pred EEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEEC
Confidence 77888755 35777777543211110000 0112334
Q ss_pred cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCc---------cc---------eEEEecccCce
Q 004468 144 QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE---------CR---------NILLDLRCGAK 205 (751)
Q Consensus 144 ~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~---------~~---------~~l~~~~~~~~ 205 (751)
.+|...+.++.|++ + .++++++.||++.+|.+............+.. .. ..+++......
T Consensus 200 ~~~~~~v~~~~~s~-d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l 277 (1045)
T 1k32_A 200 VDMSTHVSSPVIVG-H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKI 277 (1045)
T ss_dssp ECCSSCCEEEEEET-T-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCE
T ss_pred cCCCCcccceEEeC-C-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEe
Confidence 67889999999998 4 67778889999999987642211110011111 01 11222211111
Q ss_pred ecccCCC--------CCccceEEEEEe-CCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004468 206 RSLADPP--------KQTLSLKSCDIS-STRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (751)
Q Consensus 206 ~~~~~~~--------~~~~~v~~i~~s-p~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (751)
..+.... .+...+.+++|+ |+ +++|++++ ++.|++|+........ + ..
T Consensus 278 ~~l~~~~~~~~~~~~~~~~~v~~~~~S~pd-G~~la~~~-~~~i~~~~~~~~~~~~--------------~-------~~ 334 (1045)
T 1k32_A 278 EKIEIGDLESPEDRIISIPSKFAEDFSPLD-GDLIAFVS-RGQAFIQDVSGTYVLK--------------V-------PE 334 (1045)
T ss_dssp EECCCCCCCBCCSEEEECGGGGEEEEEECG-GGCEEEEE-TTEEEEECTTSSBEEE--------------C-------SC
T ss_pred eeeccCcccccccccccccccceeeecCCC-CCEEEEEE-cCEEEEEcCCCCceEE--------------c-------cC
Confidence 1110000 022368899999 95 77788777 8899999987543111 0 11
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEE-EEECCCCCcceeeeecCCCceeEEeCCCCCC
Q 004468 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVY-LMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 335 (751)
Q Consensus 277 ~~~~~vt~v~fspdg~~Ll~~s~d~~I~-lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~ 335 (751)
+....+..++|+ ||+.|+.++.+..|+ +||+.++...... .+...+..++|+|+...
T Consensus 335 ~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~ 392 (1045)
T 1k32_A 335 PLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKF 392 (1045)
T ss_dssp CSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSE
T ss_pred CCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEec-CCccceeeeEECCCCCE
Confidence 222248899999 999999999888999 9999875433222 33445566777776543
No 132
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.82 E-value=1e-18 Score=180.93 Aligned_cols=255 Identities=12% Similarity=0.091 Sum_probs=175.3
Q ss_pred cCcccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC-CeEEEEecccC-CcceEEE
Q 004468 22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-RKLLHSIETGH-SANVFCT 99 (751)
Q Consensus 22 ~~~~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~-~~~~~~l~~~h-~~~V~~v 99 (751)
.+...+..+.+|+....+ ...+..|.+.|.+++|+|+|++|++++ ++.|.+||+.+ ++....+ .+| ...|.++
T Consensus 16 ~~~~~~~~i~~~d~~~~~---~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~ 90 (297)
T 2ojh_A 16 PGGSMRSSIEIFNIRTRK---MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVD-TGFATICNNDH 90 (297)
T ss_dssp --CCCCEEEEEEETTTTE---EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECC-CTTCCCBCSCC
T ss_pred CCCCcceeEEEEeCCCCc---eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEec-cccccccccce
Confidence 345667788887754332 335667999999999999999999987 78999999998 7766555 455 4789999
Q ss_pred EEecCCCCcEEEEEE--CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEec
Q 004468 100 KFVPETSDELVVSGA--GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF 177 (751)
Q Consensus 100 ~fsp~s~~~~l~sgs--~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDl 177 (751)
+|+|+ +++|++++ .++.++||.+....+ ....+..+. .+..++|+|++..++++++.|+.+++|++
T Consensus 91 ~~spd--g~~l~~~~~~~~~~~~l~~~~~~~~---------~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~ 158 (297)
T 2ojh_A 91 GISPD--GALYAISDKVEFGKSAIYLLPSTGG---------TPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSM 158 (297)
T ss_dssp EECTT--SSEEEEEECTTTSSCEEEEEETTCC---------CCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred EECCC--CCEEEEEEeCCCCcceEEEEECCCC---------ceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEE
Confidence 99999 89999988 445666766643221 133343333 48899999955445558889999999997
Q ss_pred CCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe-CCCeEEEEeCCC-CCCccccC
Q 004468 178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRM-LPPLTSCQ 255 (751)
Q Consensus 178 r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs-~D~~IriwD~~~-~~~~~~~~ 255 (751)
+..... ......+...+.+++|+|+ +.+|++++ .++.++||++.. ....
T Consensus 159 ~~~~~~------------------------~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~~i~~~~~~~~~~---- 209 (297)
T 2ojh_A 159 DIDSGV------------------------ETRLTHGEGRNDGPDYSPD-GRWIYFNSSRTGQMQIWRVRVDGSSV---- 209 (297)
T ss_dssp ETTTCC------------------------EEECCCSSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTSSCE----
T ss_pred ECCCCc------------------------ceEcccCCCccccceECCC-CCEEEEEecCCCCccEEEECCCCCCc----
Confidence 543210 0011123457899999995 66666555 689999998863 2111
Q ss_pred CCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCC-----------CcEEEEECCCCCcceeee--ecCC
Q 004468 256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-----------EHVYLMDVNHAGGRAMRY--TVGD 322 (751)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d-----------~~I~lwdl~~~~~~~~~~--~~~~ 322 (751)
..+ ..+. ..+..++|+|+|++|++++.+ ..|++||+.++....... .+..
T Consensus 210 ---------~~~-------~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 272 (297)
T 2ojh_A 210 ---------ERI-------TDSA-YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQG 272 (297)
T ss_dssp ---------EEC-------CCCS-EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTT
T ss_pred ---------EEE-------ecCC-cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCc
Confidence 111 1121 248899999999999988875 569999999865443332 4455
Q ss_pred CceeEEeCCCCCCcccC
Q 004468 323 ASKIMSFTPTLNGLELQ 339 (751)
Q Consensus 323 ~~~~~~~sp~~~~~~~~ 339 (751)
.+..++|+|+...+.+.
T Consensus 273 ~~~~~~~spdg~~l~~~ 289 (297)
T 2ojh_A 273 TMNSPNWSPDGDEFAYV 289 (297)
T ss_dssp TSCSCCBCTTSSEEEEE
T ss_pred ccccceECCCCCEEEEE
Confidence 67778888887665443
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.81 E-value=6.1e-18 Score=192.61 Aligned_cols=248 Identities=11% Similarity=0.119 Sum_probs=171.6
Q ss_pred cccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeC--CCCeEEEEecccCCcceEEEEEec--
Q 004468 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY--SSRKLLHSIETGHSANVFCTKFVP-- 103 (751)
Q Consensus 28 ~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~--~~~~~~~~l~~~h~~~V~~v~fsp-- 103 (751)
..+.+++ ..+.+++.++..+.. +..++|+|+|++|++++.|++|.+||+ .+++.+..+ . +...+..++|+|
T Consensus 159 ~~V~v~D--~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i-~-~g~~p~~va~sp~~ 233 (543)
T 1nir_A 159 GQIALVD--GDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI-K-IGIEARSVESSKFK 233 (543)
T ss_dssp TEEEEEE--TTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE-E-CCSEEEEEEECCST
T ss_pred CeEEEEE--CCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE-e-cCCCcceEEeCCCc
Confidence 4555554 345667788884333 999999999999999999999999999 888888888 3 456789999999
Q ss_pred --CCCCcEEEEEE-CCCcEEEEECCCCCCCCCCCCCCCCceeecc----------cC-CceeEEEEecCCCCEEEEEeCC
Q 004468 104 --ETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQC----------HT-RRVKKLAVEVGNPHVVWSASED 169 (751)
Q Consensus 104 --~s~~~~l~sgs-~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~----------h~-~~V~~l~~sp~~~~~l~s~s~D 169 (751)
+ |++|++++ .+++|.|||..+. +++..+.. |. ..|..+.++|+++.++++...+
T Consensus 234 ~~d--g~~l~v~~~~~~~v~v~D~~t~----------~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~ 301 (543)
T 1nir_A 234 GYE--DRYTIAGAYWPPQFAIMDGETL----------EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 301 (543)
T ss_dssp TCT--TTEEEEEEEESSEEEEEETTTC----------CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCC--CCEEEEEEccCCeEEEEecccc----------ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence 8 78888877 5899999998864 44555443 33 3789999999888889999999
Q ss_pred CcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEE-EeCCCeEEEEeCCCC
Q 004468 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDAFARLYDRRML 248 (751)
Q Consensus 170 g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~s-gs~D~~IriwD~~~~ 248 (751)
++|.+||+.+.+.+. ...+. +...+.++.|+|+ ++++++ +..+++|.+||..++
T Consensus 302 g~i~vvd~~~~~~l~----------~~~i~--------------~~~~~~~~~~spd-g~~l~va~~~~~~v~v~D~~tg 356 (543)
T 1nir_A 302 GKVLLVNYKDIDNLT----------VTSIG--------------AAPFLHDGGWDSS-HRYFMTAANNSNKVAVIDSKDR 356 (543)
T ss_dssp TEEEEEECTTSSSCE----------EEEEE--------------CCSSCCCEEECTT-SCEEEEEEGGGTEEEEEETTTT
T ss_pred CeEEEEEecCCCcce----------eEEec--------------cCcCccCceECCC-CCEEEEEecCCCeEEEEECCCC
Confidence 999999998765320 00010 1234667899995 666554 456899999999987
Q ss_pred CCccccCCCCCCCCccccccccccccCCccccceEEEEEcCC-CCEEEEEe-CCCcEEEEECCC-------CCcceeeee
Q 004468 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSY-SGEHVYLMDVNH-------AGGRAMRYT 319 (751)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspd-g~~Ll~~s-~d~~I~lwdl~~-------~~~~~~~~~ 319 (751)
+.+..+... ...|... ...+ ++|+ |..++++. .|++|.|||+.+ .+.......
T Consensus 357 ~l~~~i~~g----------------~~ph~g~-g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~ 418 (543)
T 1nir_A 357 RLSALVDVG----------------KTPHPGR-GANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG 418 (543)
T ss_dssp EEEEEEECS----------------SSBCCTT-CEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC
T ss_pred eEEEeeccC----------------CCCCCCC-Cccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc
Confidence 644332110 0112221 2223 5787 55555554 589999999988 333333333
Q ss_pred cCCCceeEEeCCCCCC
Q 004468 320 VGDASKIMSFTPTLNG 335 (751)
Q Consensus 320 ~~~~~~~~~~sp~~~~ 335 (751)
++.....++++|+.+.
T Consensus 419 ~g~~~~~v~~~pdg~~ 434 (543)
T 1nir_A 419 QGGGSLFIKTHPKSSH 434 (543)
T ss_dssp SCSCCCCEECCTTCCE
T ss_pred CCCCceEEEcCCCCCc
Confidence 4444555667776543
No 134
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.80 E-value=6.1e-18 Score=208.22 Aligned_cols=255 Identities=10% Similarity=0.053 Sum_probs=176.5
Q ss_pred cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC-CeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004468 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (751)
Q Consensus 41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~-~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V 119 (751)
.....|.+|.+.|.++.|+++ .++++++.|+++.||.+.. +.....+ ..|. .+..++|+|+ |+.|+.+ .++.|
T Consensus 194 ~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l-~~~~-~~~~~~~SpD--G~~la~~-~~~~i 267 (1045)
T 1k32_A 194 GAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKH-TSFT-DYYPRHLNTD--GRRILFS-KGGSI 267 (1045)
T ss_dssp TEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEEC-CCCC-SSCEEEEEES--SSCEEEE-ETTEE
T ss_pred CCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEe-cCCC-CcceeeEcCC--CCEEEEE-eCCEE
Confidence 344566899999999999988 7777888899999998653 4344455 4555 4677899999 7888887 48999
Q ss_pred EEEECCCCCCCCCCCCCCCCceeecc-----------cCCceeEEEEe-cCCCCEEEEEeCCCcEEEEecCCCCCCCCCC
Q 004468 120 RLFNLSRFSGRGLDDNAITPSALYQC-----------HTRRVKKLAVE-VGNPHVVWSASEDGTLRQHDFRQGSSCPPAG 187 (751)
Q Consensus 120 ~vwd~~~~~~~~~~~~~~~~~~~~~~-----------h~~~V~~l~~s-p~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~ 187 (751)
++||+... .+..+.. |...|.+++|+ | ++..|++++ ++.|.+|++..+.......
T Consensus 268 ~~~d~~~~-----------~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~~~~~ 334 (1045)
T 1k32_A 268 YIFNPDTE-----------KIEKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVLKVPE 334 (1045)
T ss_dssp EEECTTTC-----------CEEECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEEECSC
T ss_pred EEecCCce-----------EeeeeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceEEccC
Confidence 99998421 1223322 55679999999 9 567676766 7899999988765321110
Q ss_pred CCC--------Cc----------cceE-EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCC
Q 004468 188 SSH--------QE----------CRNI-LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (751)
Q Consensus 188 ~~~--------~~----------~~~~-l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~ 248 (751)
... .+ .... +++...+....+. .+...+..++|+| ++++|++++.++.|++||+.++
T Consensus 335 ~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~l~---~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg 410 (1045)
T 1k32_A 335 PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE---ENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETG 410 (1045)
T ss_dssp CSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC---CCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTC
T ss_pred CCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCceEec---CCccceeeeEECC-CCCEEEEECCCCeEEEEECCCC
Confidence 000 00 0112 3454444333332 4567889999999 5899999999999999999876
Q ss_pred CCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCC----------cEEEEECCCCCcceeee
Q 004468 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE----------HVYLMDVNHAGGRAMRY 318 (751)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~----------~I~lwdl~~~~~~~~~~ 318 (751)
+..... .+|.. .+.+++|||||++|++++.++ .|++||+.++. .....
T Consensus 411 ~~~~~~--------------------~~~~~-~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~ 468 (1045)
T 1k32_A 411 KPTVIE--------------------RSREA-MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAAT 468 (1045)
T ss_dssp CEEEEE--------------------ECSSS-CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECS
T ss_pred ceEEec--------------------cCCCC-CccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEee
Confidence 532111 11222 478899999999999887654 99999999854 33334
Q ss_pred ecCCCceeEEeCCCCCCcccCC
Q 004468 319 TVGDASKIMSFTPTLNGLELQP 340 (751)
Q Consensus 319 ~~~~~~~~~~~sp~~~~~~~~~ 340 (751)
.+......++|+|+...+.+..
T Consensus 469 ~~~~~~~~~~~spdG~~l~~~s 490 (1045)
T 1k32_A 469 TENSHDYAPAFDADSKNLYYLS 490 (1045)
T ss_dssp CSSSBEEEEEECTTSCEEEEEE
T ss_pred CCCcccCCceEcCCCCEEEEEe
Confidence 4455566788999888776543
No 135
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.80 E-value=6.7e-18 Score=179.34 Aligned_cols=196 Identities=14% Similarity=0.172 Sum_probs=128.2
Q ss_pred EEEEEeCCCcEEEEeCC-CC--eEEEEecccCCcceEEEEEecCCCCcEEEEEECC-CcEEEEECCCCCCCCCCCCCCCC
Q 004468 64 LLISGSDDTHINVWSYS-SR--KLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-AEVRLFNLSRFSGRGLDDNAITP 139 (751)
Q Consensus 64 ~LaSgs~Dg~I~IWd~~-~~--~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D-g~V~vwd~~~~~~~~~~~~~~~~ 139 (751)
++++++.|+.|.+|++. ++ +.+..+ .|...+.+++|+|+ +++|++++.+ +.|++|++....+.. ..
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spd--g~~l~~~~~~~~~v~~~~~~~~~~~~------~~ 76 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV--DVPGQVQPMVVSPD--KRYLYVGVRPEFRVLAYRIAPDDGAL------TF 76 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSCCCCEEECTT--SSEEEEEETTTTEEEEEEECTTTCCE------EE
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE--ecCCCCceEEECCC--CCEEEEeecCCCeEEEEEecCCCCce------ee
Confidence 45555889999999985 34 233333 57788999999999 7888888876 999999997322211 22
Q ss_pred ceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceE
Q 004468 140 SALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK 219 (751)
Q Consensus 140 ~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~ 219 (751)
+..+..+. .+..++|+|++..+++++..++.|.+||+..+... ..+... . ....+.
T Consensus 77 ~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~-----------~~~~~~-----------~-~~~~~~ 132 (343)
T 1ri6_A 77 AAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV-----------GVVDVV-----------E-GLDGCH 132 (343)
T ss_dssp EEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE-----------EEEEEE-----------C-CCTTBC
T ss_pred ccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccc-----------cccccc-----------c-CCCCce
Confidence 34444444 78999999944334445556899999999522100 011000 0 123477
Q ss_pred EEEEeCCCCcEEEEEe-CCCeEEEEeCCC-CCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEE
Q 004468 220 SCDISSTRPHLLLVGG-SDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS 297 (751)
Q Consensus 220 ~i~~sp~~~~~l~sgs-~D~~IriwD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~ 297 (751)
+++|+|+ ++++++++ .++.|++||+.. .+.. .. . .... ..+....+..++|+|+|++|+++
T Consensus 133 ~~~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~~-~~----------~---~~~~--~~~~~~~~~~~~~~pdg~~l~~~ 195 (343)
T 1ri6_A 133 SANISPD-NRTLWVPALKQDRICLFTVSDDGHLV-AQ----------D---PAEV--TTVEGAGPRHMVFHPNEQYAYCV 195 (343)
T ss_dssp CCEECTT-SSEEEEEEGGGTEEEEEEECTTSCEE-EE----------E---EEEE--ECSTTCCEEEEEECTTSSEEEEE
T ss_pred EEEECCC-CCEEEEecCCCCEEEEEEecCCCcee-ee----------c---cccc--ccCCCCCcceEEECCCCCEEEEE
Confidence 8899995 66667666 899999999976 3211 00 0 0000 00111247889999999988766
Q ss_pred e-CCCcEEEEECCC
Q 004468 298 Y-SGEHVYLMDVNH 310 (751)
Q Consensus 298 s-~d~~I~lwdl~~ 310 (751)
+ .++.|++||+..
T Consensus 196 ~~~~~~i~~~~~~~ 209 (343)
T 1ri6_A 196 NELNSSVDVWELKD 209 (343)
T ss_dssp ETTTTEEEEEESSC
T ss_pred eCCCCEEEEEEecC
Confidence 5 789999999865
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.79 E-value=3.6e-18 Score=201.76 Aligned_cols=248 Identities=8% Similarity=-0.011 Sum_probs=156.0
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCc---ceEEEEEecCCCCcEEEEEECC---------CcE
Q 004468 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA---NVFCTKFVPETSDELVVSGAGD---------AEV 119 (751)
Q Consensus 52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~---~V~~v~fsp~s~~~~l~sgs~D---------g~V 119 (751)
.+.+++|+|||+++++ +.||+|++||+.+++....+ .+|.. .|.+++|+|+ |++|++++.+ +.|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~-~~~~~~~~~v~~~~~SpD--g~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLI-EGKKIESLRAIRYEISPD--REYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE-CTTTTTTTTCSEEEECTT--SSEEEEEESCCCCSSSCCCSEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEe-ccccccccccceEEECCC--CCEEEEEecCccceeecceeeE
Confidence 4678899999998877 78999999999998877666 56664 4999999999 8999999875 778
Q ss_pred EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (751)
Q Consensus 120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (751)
.+||+.++.. ..+.....|...|..++|+| +++.|+.++. +.|++||+.+++........... .++..
T Consensus 94 ~~~d~~~~~~--------~~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~--~~~~g 161 (723)
T 1xfd_A 94 VLSKIPHGDP--------QSLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEG--VIYNG 161 (723)
T ss_dssp EEEESSSCCC--------EECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCCBTT--TEEEE
T ss_pred EEEECCCCce--------EeccCCccccccccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCC--ceECc
Confidence 8999986421 11233345666789999999 6677777776 79999999876532100000000 00000
Q ss_pred cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC----------------------------------eEEEEeC
Q 004468 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA----------------------------------FARLYDR 245 (751)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~----------------------------------~IriwD~ 245 (751)
.. . .+.. ......+.+++|+|+ +++|++++.|+ .|++||+
T Consensus 162 ~~-~---~v~~-ee~~~~~~~~~~SpD-g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~ 235 (723)
T 1xfd_A 162 LS-D---WLYE-EEILKTHIAHWWSPD-GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL 235 (723)
T ss_dssp EC-C---HHHH-HTTSSSSEEEEECTT-SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES
T ss_pred cc-c---eeEE-EEeccCcceEEECCC-CCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEEC
Confidence 00 0 0000 000113478999995 78888877553 6788887
Q ss_pred CCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC----CCcEEEEECCCCCcceeeeec-
Q 004468 246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----GEHVYLMDVNHAGGRAMRYTV- 320 (751)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~----d~~I~lwdl~~~~~~~~~~~~- 320 (751)
.+.+....+.. +... ..+ ...+..++|||||++|++.+. +..|++||+.++.........
T Consensus 236 ~~~~~~~~l~~------------~~~~--~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~ 300 (723)
T 1xfd_A 236 NGPTHDLEMMP------------PDDP--RMR-EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES 300 (723)
T ss_dssp SSSCCCEECCC------------CCCG--GGS-SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC
T ss_pred CCCceeEEeeC------------CccC--CCc-cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc
Confidence 76542221110 0000 001 225899999999998877653 358999999986543333222
Q ss_pred CCCc----eeEEeCCCCCCc
Q 004468 321 GDAS----KIMSFTPTLNGL 336 (751)
Q Consensus 321 ~~~~----~~~~~sp~~~~~ 336 (751)
.... ..++|+|+.+.+
T Consensus 301 ~~~~~~~~~~~~~spdg~~l 320 (723)
T 1xfd_A 301 EAWLHRQNEEPVFSKDGRKF 320 (723)
T ss_dssp SSCCCCCCCCCEECTTSCSE
T ss_pred CCEEeccCCCceEcCCCCeE
Confidence 1111 245666655443
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.78 E-value=3.3e-17 Score=173.77 Aligned_cols=197 Identities=13% Similarity=0.127 Sum_probs=134.2
Q ss_pred EECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE-CCCcEEEEECCCCCCCCCCC
Q 004468 57 SWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA-GDAEVRLFNLSRFSGRGLDD 134 (751)
Q Consensus 57 ~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs-~Dg~V~vwd~~~~~~~~~~~ 134 (751)
.|.++++ .+++++.++.|.+||..+++.+..+ ..+...+ +++|+|+ ++++++++ .++.|.+||+..+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~-~~~~s~d--g~~l~~~~~~~~~i~~~d~~~~------- 72 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQI-TLGYDFV-DTAITSD--CSNVVVTSDFCQTLVQIETQLE------- 72 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEE-ECCCCEE-EEEECSS--SCEEEEEESTTCEEEEEECSSS-------
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeE-EccCCcc-eEEEcCC--CCEEEEEeCCCCeEEEEECCCC-------
Confidence 4555554 5788889999999999999988887 4556667 9999999 67655554 4899999999864
Q ss_pred CCCCC-ceeecccCCceeEEEEecCCCCEEEEEeCCC---cEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccC
Q 004468 135 NAITP-SALYQCHTRRVKKLAVEVGNPHVVWSASEDG---TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 210 (751)
Q Consensus 135 ~~~~~-~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg---~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 210 (751)
+. ...+..+..++.+++|+| ++++++++..++ .|.+||+.+++.. .. +.
T Consensus 73 ---~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~-----------~~-~~----------- 125 (331)
T 3u4y_A 73 ---PPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFI-----------ST-IP----------- 125 (331)
T ss_dssp ---SCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEE-----------EE-EE-----------
T ss_pred ---ceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeE-----------EE-EE-----------
Confidence 33 555666666666699999 567666555543 8999999876521 00 00
Q ss_pred CCCCccceEEEEEeCCCCcEEEEEeCCCe-EEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcC
Q 004468 211 PPKQTLSLKSCDISSTRPHLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP 289 (751)
Q Consensus 211 ~~~~~~~v~~i~~sp~~~~~l~sgs~D~~-IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fsp 289 (751)
......+++|+|++..+++++..++. |++|++.....+... ....+ .. ...+..++|+|
T Consensus 126 ---~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~-------------~~~~~-~~---~~~~~~~~~sp 185 (331)
T 3u4y_A 126 ---IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDT-------------GQEFI-SG---GTRPFNITFTP 185 (331)
T ss_dssp ---CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEE-------------EEEEE-CS---SSSEEEEEECT
T ss_pred ---CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeec-------------CCccc-cC---CCCccceEECC
Confidence 12245799999964446666667688 999998753221100 00000 01 11378999999
Q ss_pred CCCEEEEEe-CCCcEEEEECCCC
Q 004468 290 NGEEVLLSY-SGEHVYLMDVNHA 311 (751)
Q Consensus 290 dg~~Ll~~s-~d~~I~lwdl~~~ 311 (751)
+|++|++++ .++.|++||+.++
T Consensus 186 dg~~l~v~~~~~~~v~v~d~~~~ 208 (331)
T 3u4y_A 186 DGNFAFVANLIGNSIGILETQNP 208 (331)
T ss_dssp TSSEEEEEETTTTEEEEEECSST
T ss_pred CCCEEEEEeCCCCeEEEEECCCC
Confidence 999776655 5899999998773
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.78 E-value=1.9e-17 Score=171.20 Aligned_cols=182 Identities=12% Similarity=0.116 Sum_probs=126.2
Q ss_pred EEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCC-CCCCCCCCCCCCCceeecc
Q 004468 67 SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR-FSGRGLDDNAITPSALYQC 145 (751)
Q Consensus 67 Sgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~-~~~~~~~~~~~~~~~~~~~ 145 (751)
+++.|++|++||+.+++... + ..|...|.+++|+|+ +++|++++ ++.|++||+.. + ++......
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~-~-~~~~~~v~~~~~spd--g~~l~~~~-~~~i~~~d~~~~~----------~~~~~~~~ 81 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV-V-WQTPELFEAPNWSPD--GKYLLLNS-EGLLYRLSLAGDP----------SPEKVDTG 81 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE-E-EEESSCCEEEEECTT--SSEEEEEE-TTEEEEEESSSCC----------SCEECCCT
T ss_pred CCCcceeEEEEeCCCCceee-e-ccCCcceEeeEECCC--CCEEEEEc-CCeEEEEeCCCCC----------CceEeccc
Confidence 45689999999999887664 3 468999999999999 78999876 78999999986 4 23444444
Q ss_pred c-CCceeEEEEecCCCCEEEEEe--CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEE
Q 004468 146 H-TRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD 222 (751)
Q Consensus 146 h-~~~V~~l~~sp~~~~~l~s~s--~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~ 222 (751)
| ...|.+++|+| ++..|++++ .++.+.+|.+...... ...+. ....+..++
T Consensus 82 ~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~---------------------~~~~~----~~~~~~~~~ 135 (297)
T 2ojh_A 82 FATICNNDHGISP-DGALYAISDKVEFGKSAIYLLPSTGGT---------------------PRLMT----KNLPSYWHG 135 (297)
T ss_dssp TCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETTCCC---------------------CEECC----SSSSEEEEE
T ss_pred cccccccceEECC-CCCEEEEEEeCCCCcceEEEEECCCCc---------------------eEEee----cCCCccceE
Confidence 5 47789999999 667888888 4456666665432110 00010 112378889
Q ss_pred EeCCCCcEEE-EEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC-C
Q 004468 223 ISSTRPHLLL-VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-G 300 (751)
Q Consensus 223 ~sp~~~~~l~-sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d 300 (751)
|+|+ +++|+ ++..|+.++||++...... ...+ ..+. ..+.+++|+|+|++|++++. +
T Consensus 136 ~spd-g~~l~~~~~~~~~~~l~~~~~~~~~------------~~~~-------~~~~-~~~~~~~~s~dg~~l~~~~~~~ 194 (297)
T 2ojh_A 136 WSPD-GKSFTYCGIRDQVFDIYSMDIDSGV------------ETRL-------THGE-GRNDGPDYSPDGRWIYFNSSRT 194 (297)
T ss_dssp ECTT-SSEEEEEEEETTEEEEEEEETTTCC------------EEEC-------CCSS-SCEEEEEECTTSSEEEEEECTT
T ss_pred ECCC-CCEEEEEECCCCceEEEEEECCCCc------------ceEc-------ccCC-CccccceECCCCCEEEEEecCC
Confidence 9996 55555 8889999999996432100 0101 1111 24899999999998887764 8
Q ss_pred CcEEEEECCC
Q 004468 301 EHVYLMDVNH 310 (751)
Q Consensus 301 ~~I~lwdl~~ 310 (751)
+.++||++..
T Consensus 195 ~~~~i~~~~~ 204 (297)
T 2ojh_A 195 GQMQIWRVRV 204 (297)
T ss_dssp SSCEEEEEET
T ss_pred CCccEEEECC
Confidence 8888887653
No 139
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.77 E-value=2.6e-18 Score=190.30 Aligned_cols=219 Identities=11% Similarity=0.070 Sum_probs=153.5
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC----------eEEEE----ecccCCcceEEEEEecCCCCcEEE---
Q 004468 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----------KLLHS----IETGHSANVFCTKFVPETSDELVV--- 111 (751)
Q Consensus 49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~----------~~~~~----l~~~h~~~V~~v~fsp~s~~~~l~--- 111 (751)
+...++.|++++++.+|++|+.|+ |+||+.... ..+.. ....|...|.+++|+|+ +++|+
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spd--g~~lav~~ 111 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCD--NLTLSACM 111 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTT--SCEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCC--CCEEEEEE
Confidence 445789999999999999999998 888874311 01111 01246678999999999 78888
Q ss_pred -EEECCCcEEEEECCCCC-CCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCC
Q 004468 112 -SGAGDAEVRLFNLSRFS-GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS 189 (751)
Q Consensus 112 -sgs~Dg~V~vwd~~~~~-~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~ 189 (751)
+|+.|++|+|||+.... +..........+..+.+|...|.+++|+|+++.+|++++.||+|++||++++...
T Consensus 112 ~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~------ 185 (434)
T 2oit_A 112 MSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV------ 185 (434)
T ss_dssp EETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE------
T ss_pred eccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce------
Confidence 88899999999987531 0000000001245667899999999999976899999999999999999876311
Q ss_pred CCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccc
Q 004468 190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP 269 (751)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (751)
.. ...|...|.+++|+|+ +.+|++|+.|+.|++||.+ ++....+.
T Consensus 186 -------~~------------~~~~~~~v~~v~wspd-g~~lasgs~dg~v~iwd~~-~~~~~~~~-------------- 230 (434)
T 2oit_A 186 -------CA------------TLPSTVAVTSVCWSPK-GKQLAVGKQNGTVVQYLPT-LQEKKVIP-------------- 230 (434)
T ss_dssp -------EE------------EECGGGCEEEEEECTT-SSCEEEEETTSCEEEECTT-CCEEEEEC--------------
T ss_pred -------ee------------ccCCCCceeEEEEcCC-CCEEEEEcCCCcEEEEccC-Cccccccc--------------
Confidence 00 0125678999999995 8999999999999999998 33221111
Q ss_pred cccccCCccccceEEEEEcCCCCEEEEEe-CCC------cEEEEECCCC
Q 004468 270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGE------HVYLMDVNHA 311 (751)
Q Consensus 270 ~~~~~~g~~~~~vt~v~fspdg~~Ll~~s-~d~------~I~lwdl~~~ 311 (751)
.+..........|.+++|++++.++++.+ .+| .+++|++.+.
T Consensus 231 ~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 231 CPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 01100111122599999999998876544 343 3999999874
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.77 E-value=4.6e-17 Score=191.79 Aligned_cols=201 Identities=12% Similarity=-0.018 Sum_probs=137.9
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCC----
Q 004468 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR---- 126 (751)
Q Consensus 51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~---- 126 (751)
..|.+++|+|| +.|+.+. |+.|++||+.+++.... ..+...+.+++|+|+ |++|+++ .|+.|++||+..
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l--~~~~~~~~~~~~Spd--G~~la~~-~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYL--FDTNEETASLDFSPV--GDRVAYV-RNHNLYIARGGKLGEG 154 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEE--ECCTTCCTTCEECTT--SSEEEEE-ETTEEEEEECBCTTSC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEc--cCCcccccCCcCCCC--CCEEEEE-ECCeEEEEecCccccc
Confidence 56999999999 6555554 59999999998876543 356778999999999 8888885 689999999986
Q ss_pred -CCCCCCCCCCCCCceeecccC--------------CceeEEEEecCCCCEEEEEeC-----------------------
Q 004468 127 -FSGRGLDDNAITPSALYQCHT--------------RRVKKLAVEVGNPHVVWSASE----------------------- 168 (751)
Q Consensus 127 -~~~~~~~~~~~~~~~~~~~h~--------------~~V~~l~~sp~~~~~l~s~s~----------------------- 168 (751)
+.. ......+. ..+.+++|+| +++.|++++.
T Consensus 155 ~g~~----------~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~ 223 (706)
T 2z3z_A 155 MSRA----------IAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPL 223 (706)
T ss_dssp CCCC----------EESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEE
T ss_pred CCCc----------EEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEe
Confidence 421 22222222 2358999999 6678878772
Q ss_pred ----------CCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC
Q 004468 169 ----------DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA 238 (751)
Q Consensus 169 ----------Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~ 238 (751)
+..|++||+.+++ ...+.....+...+.+++|+|+ +++|++++.++
T Consensus 224 ~y~~~g~~~~~~~l~~~d~~~~~-----------------------~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~ 279 (706)
T 2z3z_A 224 YYPMAGTPSHHVTVGIYHLATGK-----------------------TVYLQTGEPKEKFLTNLSWSPD-ENILYVAEVNR 279 (706)
T ss_dssp CCCBTTSCCCEEEEEEEETTTTE-----------------------EEECCCCSCTTCEEEEEEECTT-SSEEEEEEECT
T ss_pred eCCCCCCCCCeeEEEEEECCCCc-----------------------eEeeccCCCCceeEeeEEEECC-CCEEEEEEeCC
Confidence 3456666655443 2222222235567899999994 78888887775
Q ss_pred -----eEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcC--CCCEEEEEeCCCcEEEEECC
Q 004468 239 -----FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP--NGEEVLLSYSGEHVYLMDVN 309 (751)
Q Consensus 239 -----~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fsp--dg~~Ll~~s~d~~I~lwdl~ 309 (751)
.|++||+.+++....+ ..... ..... .+..++|+| ||++|+++..++.++||+++
T Consensus 280 ~~~~~~v~~~d~~~g~~~~~~-------------~~~~~--~~~~~-~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 280 AQNECKVNAYDAETGRFVRTL-------------FVETD--KHYVE-PLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp TSCEEEEEEEETTTCCEEEEE-------------EEEEC--SSCCC-CCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred CCCeeEEEEEECCCCceeeEE-------------EEccC--CCeEC-ccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 9999999876321111 00000 00000 245689999 99999988889988888765
No 141
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.77 E-value=1.7e-16 Score=169.41 Aligned_cols=206 Identities=9% Similarity=0.077 Sum_probs=147.0
Q ss_pred CCCcEEEEEECCCCCEEEEEeC-------CCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCc-EEEEEECCCcEE
Q 004468 49 HQGCVNAISWNSKGSLLISGSD-------DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAEVR 120 (751)
Q Consensus 49 H~~~V~~l~~s~dg~~LaSgs~-------Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~-~l~sgs~Dg~V~ 120 (751)
....+..++|+|+|++|++++. ++.|.+||..+++.+..+. ....+..++|+|+ ++ +++++..++.|.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~d--g~~l~v~~~~~~~v~ 114 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--NDLKPFGATINNT--TQTLWFGNTVNSAVT 114 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--ESSCCCSEEEETT--TTEEEEEETTTTEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--cCCCcceEEECCC--CCEEEEEecCCCEEE
Confidence 4567889999999998888874 5689999999999888873 2345889999999 66 555666689999
Q ss_pred EEECCCCCCCCCCCCCCCCceeecccCC---------ceeEEEEecCCCCEEEEE-eCCCcEEEEecCCCCCCCCCCCCC
Q 004468 121 LFNLSRFSGRGLDDNAITPSALYQCHTR---------RVKKLAVEVGNPHVVWSA-SEDGTLRQHDFRQGSSCPPAGSSH 190 (751)
Q Consensus 121 vwd~~~~~~~~~~~~~~~~~~~~~~h~~---------~V~~l~~sp~~~~~l~s~-s~Dg~I~iwDlr~~~~~~~~~~~~ 190 (751)
+||+.++ +.+..+..+.. .+.+++|+|++..+++++ +.++.|.+||+.+++..
T Consensus 115 ~~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~------- 177 (353)
T 3vgz_A 115 AIDAKTG----------EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK------- 177 (353)
T ss_dssp EEETTTC----------CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE-------
T ss_pred EEeCCCC----------eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE-------
Confidence 9999864 33444444332 268899999554455444 35889999999876421
Q ss_pred CccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccc
Q 004468 191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM 270 (751)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (751)
... +.....+.+++|+|+ ++++++++.++.|.+||..+.+....+..
T Consensus 178 -------~~~-----------~~~~~~~~~~~~s~d-g~~l~~~~~~~~i~~~d~~~~~~~~~~~~-------------- 224 (353)
T 3vgz_A 178 -------TAI-----------QNTGKMSTGLALDSE-GKRLYTTNADGELITIDTADNKILSRKKL-------------- 224 (353)
T ss_dssp -------EEE-----------CCCCTTCCCCEEETT-TTEEEEECTTSEEEEEETTTTEEEEEEEC--------------
T ss_pred -------EEe-----------cCCCCccceEEECCC-CCEEEEEcCCCeEEEEECCCCeEEEEEEc--------------
Confidence 110 001224677899995 78888899999999999987654332211
Q ss_pred ccccCCccccceEEEEEcCCCCEEEEEeC-CCcEEEEECCCC
Q 004468 271 HLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHA 311 (751)
Q Consensus 271 ~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~~I~lwdl~~~ 311 (751)
...++.. .+..++|+|+|++|+++.. ++.|++||+.++
T Consensus 225 --~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 225 --LDDGKEH-FFINISLDTARQRAFITDSKAAEVLVVDTRNG 263 (353)
T ss_dssp --CCSSSCC-CEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred --CCCCCCc-ccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 0011112 4788999999998877765 599999998773
No 142
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.75 E-value=4.5e-17 Score=180.28 Aligned_cols=221 Identities=10% Similarity=0.013 Sum_probs=148.1
Q ss_pred cCCCcEEEEEECCCCCEEE----EEeCCCcEEEEeCCCC--------eE---EEEecccCCcceEEEEEecCCCCcEEEE
Q 004468 48 GHQGCVNAISWNSKGSLLI----SGSDDTHINVWSYSSR--------KL---LHSIETGHSANVFCTKFVPETSDELVVS 112 (751)
Q Consensus 48 gH~~~V~~l~~s~dg~~La----Sgs~Dg~I~IWd~~~~--------~~---~~~l~~~h~~~V~~v~fsp~s~~~~l~s 112 (751)
.|.+.|++++|+|+|++|| +|+.|++|+|||+.++ +. +..+ .+|...|.+++|+|+. +.+|++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~~p~~-~~~las 167 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL-KDAGGMVIDMKWNPTV-PSMVAV 167 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECC-CSGGGSEEEEEECSSC-TTEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeecc-CCCCCceEEEEECCCC-CCEEEE
Confidence 3677899999999999999 8899999999998654 21 2333 6899999999999984 689999
Q ss_pred EECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCc
Q 004468 113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE 192 (751)
Q Consensus 113 gs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~ 192 (751)
|+.|++|++||+... ..+....+|...|++++|+| ++++|++|+.||+|++||++ ++..
T Consensus 168 ~s~Dg~v~iwD~~~~----------~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~--------- 226 (434)
T 2oit_A 168 CLADGSIAVLQVTET----------VKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEK--------- 226 (434)
T ss_dssp EETTSCEEEEEESSS----------EEEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEE---------
T ss_pred EECCCeEEEEEcCCC----------cceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-Cccc---------
Confidence 999999999999864 22445567899999999999 57899999999999999998 3211
Q ss_pred cceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEE-EeCCC------eEEEEeCCCCCCccccCCCCCCCCccc
Q 004468 193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDA------FARLYDRRMLPPLTSCQKRMSPPPCVN 265 (751)
Q Consensus 193 ~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~s-gs~D~------~IriwD~~~~~~~~~~~~~~~~~~~~~ 265 (751)
..+... ......|...|.+++|+++ ..++++ +..|| .+++|++++.+.... ....
T Consensus 227 ---~~~~~~------~~~~~~~~~~v~~v~w~~~-~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~--------~~~~ 288 (434)
T 2oit_A 227 ---KVIPCP------PFYESDHPVRVLDVLWIGT-YVFAIVYAAADGTLETSPDVVMALLPKKEEKHP--------EIFV 288 (434)
T ss_dssp ---EEECCC------TTCCTTSCEEEEEEEEEET-TEEEEEEEETTCCSSSCCEEEEEECCCTTTCCC--------CEEE
T ss_pred ---ccccCC------cccCCCCceeEEEEEEecC-ceEEEEEccCCCccCCCCceEEEEeccCCCCCC--------cceE
Confidence 000000 0011124568999999994 455443 44443 389999986532110 0111
Q ss_pred cccccccccCCccccceEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q 004468 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH 310 (751)
Q Consensus 266 ~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~~I~lwdl~~ 310 (751)
.+........+... +...+.+-++.++|++++. ...|.|+....
T Consensus 289 ~~~~~~~~~~~~r~-~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~ 333 (434)
T 2oit_A 289 NFMEPCYGSCTERQ-HHYYLSYIEEWDLVLAASAASTEVSILARQS 333 (434)
T ss_dssp ECCCSSCCCCSSSC-CCEEEEEEGGGTEEEEEETTCSBCEEEEECT
T ss_pred ecccCCCCCCCCcC-cceeeehhccCCEEEEecCCCCceeEEEecC
Confidence 11111010001111 1224445578888777665 56677776443
No 143
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.74 E-value=1.3e-16 Score=183.70 Aligned_cols=195 Identities=10% Similarity=0.031 Sum_probs=135.7
Q ss_pred CCcEEEEEECCCCCEEEEEeC-CCcEEEEeCCCCeEEEEecccCC-cceEEEEEecCCCCcEEEEEEC---CCcEEEEEC
Q 004468 50 QGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHS-ANVFCTKFVPETSDELVVSGAG---DAEVRLFNL 124 (751)
Q Consensus 50 ~~~V~~l~~s~dg~~LaSgs~-Dg~I~IWd~~~~~~~~~l~~~h~-~~V~~v~fsp~s~~~~l~sgs~---Dg~V~vwd~ 124 (751)
...|++++|+|||++||+++. ||++.||++.++.. ..+ +.|. ..|.+++|+|+ +++++++. +...+||.+
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~l-t~~~~~~~~~~~~spd---~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKL-NREPINSVLDPHYGVG---RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EEC-CSSCCSEECEECTTCS---EEEEEEECSTTSCCEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-Eee-ecccccccccccCCCC---eEEEEeccCCCCcceEEEEE
Confidence 457999999999999999987 99999999866554 445 4454 68999999987 67777775 566677766
Q ss_pred CC--CCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004468 125 SR--FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (751)
Q Consensus 125 ~~--~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~ 202 (751)
.. .. ... .+..+ ..+...+|+|++..++++.+.++.+.+||+.+++.. .+..
T Consensus 96 ~~~~~g---------~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~------------~l~~--- 149 (582)
T 3o4h_A 96 NTSRPG---------EEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR------------ELAR--- 149 (582)
T ss_dssp ETTSTT---------CCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE------------EEEE---
T ss_pred eccCCC---------ccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE------------Eeec---
Confidence 53 11 111 22222 223466888865555445555555569999876421 1111
Q ss_pred CceecccCCCCCccceEEEEEeCCCCcEEEEEeCC----CeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcc
Q 004468 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (751)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D----~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 278 (751)
+.. .+++|+| ++++|++++.| ..|++||+.+++... + .++.
T Consensus 150 -----------~~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~~~--------------l-------~~~~ 194 (582)
T 3o4h_A 150 -----------LPG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGLRV--------------F-------DSGE 194 (582)
T ss_dssp -----------ESS--CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCCEE--------------E-------CCSS
T ss_pred -----------CCC--ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCceE--------------e-------ecCC
Confidence 011 6889999 58999988877 789999988764321 1 1122
Q ss_pred ccceEEEEEcCCCCEEEEEeCCC--cEEEEECCCC
Q 004468 279 SLHLTHVTFSPNGEEVLLSYSGE--HVYLMDVNHA 311 (751)
Q Consensus 279 ~~~vt~v~fspdg~~Ll~~s~d~--~I~lwdl~~~ 311 (751)
. .+..++|||||++|+++..++ .|++||+.++
T Consensus 195 ~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~ 228 (582)
T 3o4h_A 195 G-SFSSASISPGMKVTAGLETAREARLVTVDPRDG 228 (582)
T ss_dssp C-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTC
T ss_pred C-ccccceECCCCCEEEEccCCCeeEEEEEcCCCC
Confidence 2 479999999999999887888 8999999874
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.73 E-value=1.1e-16 Score=169.33 Aligned_cols=146 Identities=6% Similarity=-0.037 Sum_probs=105.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEecccCCc-ceEEEEEecCCCCcE-EEEEECCCcEEEEECCCCCCCCCCCCCCCCc
Q 004468 63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSA-NVFCTKFVPETSDEL-VVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (751)
Q Consensus 63 ~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~-~V~~v~fsp~s~~~~-l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~ 140 (751)
++|++++.++.|.+||+.+++.+..+..++.. .+..++|+|+ ++. +++++.++.|.+||+.++ +.+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~l~v~~~~~~~v~~~d~~~~----------~~~ 69 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPG--GRIAYATVNKSESLVKIDLVTG----------ETL 69 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTT--SSEEEEEETTTTEEEEEETTTC----------CEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCC--CCEEEEEeCCCCeEEEEECCCC----------CeE
Confidence 47999999999999999999988887434433 4889999999 655 566677899999999864 223
Q ss_pred eeecc-----cCCceeEEEEecCCCCEEEEEe------------CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccC
Q 004468 141 ALYQC-----HTRRVKKLAVEVGNPHVVWSAS------------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (751)
Q Consensus 141 ~~~~~-----h~~~V~~l~~sp~~~~~l~s~s------------~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (751)
..+.. |...+..++|+| ++..+++++ .++.|.+||+.+++.. ....
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~--------------~~~~-- 132 (337)
T 1pby_B 70 GRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR--------------KAFE-- 132 (337)
T ss_dssp EEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE--------------EEEE--
T ss_pred eeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEE--------------EEEe--
Confidence 33332 123678899999 556666665 5799999999775421 1000
Q ss_pred ceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC
Q 004468 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 250 (751)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~ 250 (751)
....+.+++|+|+ +++|+++ ++.|++||+.+.+.
T Consensus 133 ----------~~~~~~~~~~s~d-g~~l~~~--~~~i~~~d~~~~~~ 166 (337)
T 1pby_B 133 ----------APRQITMLAWARD-GSKLYGL--GRDLHVMDPEAGTL 166 (337)
T ss_dssp ----------CCSSCCCEEECTT-SSCEEEE--SSSEEEEETTTTEE
T ss_pred ----------CCCCcceeEECCC-CCEEEEe--CCeEEEEECCCCcE
Confidence 1123667889995 6766666 68899999987653
No 145
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.71 E-value=6.4e-16 Score=163.98 Aligned_cols=267 Identities=7% Similarity=0.056 Sum_probs=165.8
Q ss_pred ccccccchhh-hccccccEEeccCCCcEEEEEECCCCCEEEEEeCC-CcEEEEeCC--CCe--EEEEecccCCcceEEEE
Q 004468 27 NHSLQMHSSL-VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDD-THINVWSYS--SRK--LLHSIETGHSANVFCTK 100 (751)
Q Consensus 27 ~~~l~~~~~~-i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~D-g~I~IWd~~--~~~--~~~~l~~~h~~~V~~v~ 100 (751)
+..+.+|+.. ..+++....+ .|...+.+++|+|+|++|++++.+ +.|.+|++. ++. .+..+ ..+ ..+.+++
T Consensus 14 ~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~ 90 (343)
T 1ri6_A 14 SQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES-ALP-GSLTHIS 90 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE-ECS-SCCSEEE
T ss_pred CCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccc-ccC-CCCcEEE
Confidence 4566666542 2233334443 477889999999999999988886 999999987 554 33444 333 3889999
Q ss_pred EecCCCCcEEEEEE-CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe-CCCcEEEEecC
Q 004468 101 FVPETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFR 178 (751)
Q Consensus 101 fsp~s~~~~l~sgs-~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~Dg~I~iwDlr 178 (751)
|+|+ +++|++++ .++.|.+||+..+. . ...+..+.. ...+.+++|+| ++..+++++ .++.|++||+.
T Consensus 91 ~s~d--g~~l~~~~~~~~~i~~~d~~~~~--~-----~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~ 159 (343)
T 1ri6_A 91 TDHQ--GQFVFVGSYNAGNVSVTRLEDGL--P-----VGVVDVVEG-LDGCHSANISP-DNRTLWVPALKQDRICLFTVS 159 (343)
T ss_dssp ECTT--SSEEEEEETTTTEEEEEEEETTE--E-----EEEEEEECC-CTTBCCCEECT-TSSEEEEEEGGGTEEEEEEEC
T ss_pred EcCC--CCEEEEEecCCCeEEEEECCCCc--c-----ccccccccC-CCCceEEEECC-CCCEEEEecCCCCEEEEEEec
Confidence 9999 77776555 48899999995210 0 023344443 34588999999 455555555 89999999998
Q ss_pred C-CCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEE-EEEeCCCeEEEEeCCCCCCccccCC
Q 004468 179 Q-GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRMLPPLTSCQK 256 (751)
Q Consensus 179 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~sgs~D~~IriwD~~~~~~~~~~~~ 256 (751)
+ ++. ..+... .... .....+..++|+|+ ++++ +++..++.|++||+........
T Consensus 160 ~~~~~------------~~~~~~------~~~~--~~~~~~~~~~~~pd-g~~l~~~~~~~~~i~~~~~~~~~g~~~--- 215 (343)
T 1ri6_A 160 DDGHL------------VAQDPA------EVTT--VEGAGPRHMVFHPN-EQYAYCVNELNSSVDVWELKDPHGNIE--- 215 (343)
T ss_dssp TTSCE------------EEEEEE------EEEC--STTCCEEEEEECTT-SSEEEEEETTTTEEEEEESSCTTSCCE---
T ss_pred CCCce------------eeeccc------cccc--CCCCCcceEEECCC-CCEEEEEeCCCCEEEEEEecCCCCcEE---
Confidence 6 321 000000 0000 01235778999996 5655 5555899999999964211000
Q ss_pred CCCCCCccccccccccccCCc-cccceEEEEEcCCCCEEEEEe-CCCcEEEEECCC--CCcce-eeeecCCCceeEEeCC
Q 004468 257 RMSPPPCVNYFCPMHLSEHGR-SSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNH--AGGRA-MRYTVGDASKIMSFTP 331 (751)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~-~~~~vt~v~fspdg~~Ll~~s-~d~~I~lwdl~~--~~~~~-~~~~~~~~~~~~~~sp 331 (751)
....... . ..++ ....+..++|+|+|++|+++. .++.|++||+.. +.... ........+..++|+|
T Consensus 216 ------~~~~~~~--~-~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~ 286 (343)
T 1ri6_A 216 ------CVQTLDM--M-PENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDH 286 (343)
T ss_dssp ------EEEEEEC--S-CTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECT
T ss_pred ------EEeeccc--c-CccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECC
Confidence 0000000 0 0010 012477899999999888655 689999999983 22122 1223334477889999
Q ss_pred CCCCcccCC
Q 004468 332 TLNGLELQP 340 (751)
Q Consensus 332 ~~~~~~~~~ 340 (751)
+.+.+....
T Consensus 287 dg~~l~~~~ 295 (343)
T 1ri6_A 287 SGKYLIAAG 295 (343)
T ss_dssp TSSEEEEEC
T ss_pred CCCEEEEec
Confidence 877655543
No 146
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.69 E-value=1.3e-15 Score=165.12 Aligned_cols=212 Identities=14% Similarity=0.118 Sum_probs=142.6
Q ss_pred ccccEEeccCCCcEEE-----EEECCCCCEEEEEeC-CCc--EEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEE
Q 004468 40 LSQERELEGHQGCVNA-----ISWNSKGSLLISGSD-DTH--INVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV 111 (751)
Q Consensus 40 ~~~~~~L~gH~~~V~~-----l~~s~dg~~LaSgs~-Dg~--I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~ 111 (751)
......|..|.+.+.. .+|+|||++||.++. ++. |.+||+.+++..... .++...+..+.|+|+ ++.|+
T Consensus 20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt-~~~~~~~~~~~~spd--g~~l~ 96 (388)
T 3pe7_A 20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT-EGRGDNTFGGFLSPD--DDALF 96 (388)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC-CSSCBCSSSCEECTT--SSEEE
T ss_pred CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee-eCCCCCccceEEcCC--CCEEE
Confidence 4556778888877776 899999999999987 674 888899888776555 667767777899999 89999
Q ss_pred EEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEE--ecCCCCEEEEE----------------------e
Q 004468 112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV--EVGNPHVVWSA----------------------S 167 (751)
Q Consensus 112 sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~--sp~~~~~l~s~----------------------s 167 (751)
.++.++.|++||+.++ +....+..+...+....| +| ++.+++.. +
T Consensus 97 ~~~~~~~l~~~d~~~g----------~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 97 YVKDGRNLMRVDLATL----------EENVVYQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp EEETTTEEEEEETTTC----------CEEEEEECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred EEeCCCeEEEEECCCC----------cceeeeechhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccC
Confidence 9999999999999865 223444555555544444 67 55666532 2
Q ss_pred CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC------CeEE
Q 004468 168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD------AFAR 241 (751)
Q Consensus 168 ~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D------~~Ir 241 (751)
.+..|.+||+.+++. ..+.. +...+..+.|+|.++..|+....+ ..|.
T Consensus 166 ~~~~l~~~d~~~g~~------------~~l~~--------------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~ 219 (388)
T 3pe7_A 166 PCCRLMRVDLKTGES------------TVILQ--------------ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMW 219 (388)
T ss_dssp CCEEEEEEETTTCCE------------EEEEE--------------ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEE
T ss_pred CcceEEEEECCCCce------------EEeec--------------CCccccccEECCCCCCEEEEEEecCCCCCcceEE
Confidence 345677788776541 11111 234578899999336777666653 3777
Q ss_pred EEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC-CC----cEEEEECCCC
Q 004468 242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE----HVYLMDVNHA 311 (751)
Q Consensus 242 iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~----~I~lwdl~~~ 311 (751)
++|....... .+. .......+..++|+|||+.|+..+. ++ .|++||+.++
T Consensus 220 ~~d~~~~~~~--------------~l~------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 220 LINEDGTNMR--------------KVK------THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp EEETTSCCCE--------------ESC------CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred EEeCCCCceE--------------Eee------eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence 8887643211 010 0111113778899999998765443 22 3999999885
No 147
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.69 E-value=7.2e-16 Score=181.56 Aligned_cols=216 Identities=11% Similarity=0.026 Sum_probs=133.6
Q ss_pred cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEE-EEecccCC-----------------cceEEEEEe
Q 004468 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL-HSIETGHS-----------------ANVFCTKFV 102 (751)
Q Consensus 41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~-~~l~~~h~-----------------~~V~~v~fs 102 (751)
+....|..+ .++.+.|. |+.+++++.|+ | +||+.+++.+ ..+ ..|. ..|.+++|+
T Consensus 18 ~~~~~~~~~--~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l-~~~~~~~~~l~~~~~~~~~~~~~v~~~~~s 90 (706)
T 2z3z_A 18 KEFYNFYPE--YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTR-FSAADLNALMPEGCKFQTTDAFPSFRTLDA 90 (706)
T ss_dssp ------------CTTCEEE--TTEEEEEETTE-E-EEEC-------CEE-EEHHHHHTTC-----------CCCEEEEET
T ss_pred ccccccccc--cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEe-echhHhhhhccchhccccccccCceeEEEC
Confidence 333444444 25567888 77788888888 8 9999998873 344 2332 569999999
Q ss_pred cCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC---
Q 004468 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ--- 179 (751)
Q Consensus 103 p~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~--- 179 (751)
|+ +.++++ .|+.|++||+.++ + ...+..+...+.+++|+| +++.|+++ .|+.|++||+.+
T Consensus 91 pd--~~~~~~--~~~~i~~~d~~~~----------~-~~~l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~ 153 (706)
T 2z3z_A 91 GR--GLVVLF--TQGGLVGFDMLAR----------K-VTYLFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGE 153 (706)
T ss_dssp TT--TEEEEE--ETTEEEEEETTTT----------E-EEEEECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTS
T ss_pred CC--CeEEEE--ECCEEEEEECCCC----------c-eEEccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccc
Confidence 98 455555 3599999999863 1 334455777899999999 66777774 689999999987
Q ss_pred --CCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe----------------------
Q 004468 180 --GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG---------------------- 235 (751)
Q Consensus 180 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs---------------------- 235 (751)
++.......... .+..... ....+...+.++.|+|+ +++|++++
T Consensus 154 ~~g~~~~~~~~~~~---~~~~g~~--------~~~ee~~~~~~~~~SpD-g~~la~~~~d~~~~~~~~~~~~~~~~~~~~ 221 (706)
T 2z3z_A 154 GMSRAIAVTIDGTE---TLVYGQA--------VHQREFGIEKGTFWSPK-GSCLAFYRMDQSMVKPTPIVDYHPLEAESK 221 (706)
T ss_dssp CCCCCEESCSCCBT---TEEESSC--------CGGGCTTCCCSEEECTT-SSEEEEEEEECTTSCCEEEEECCSSSCEEE
T ss_pred cCCCcEEeccCCCC---CeEcccc--------hhhhhcCCCceEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCceE
Confidence 543211110000 0111000 00011234678999995 78888887
Q ss_pred -----------CCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCC---
Q 004468 236 -----------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE--- 301 (751)
Q Consensus 236 -----------~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~--- 301 (751)
.+..|++||+.+.+..... . ...+. ..+.+++|+|||++|++++.++
T Consensus 222 ~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~-----------------~-~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~ 282 (706)
T 2z3z_A 222 PLYYPMAGTPSHHVTVGIYHLATGKTVYLQ-----------------T-GEPKE-KFLTNLSWSPDENILYVAEVNRAQN 282 (706)
T ss_dssp EECCCBTTSCCCEEEEEEEETTTTEEEECC-----------------C-CSCTT-CEEEEEEECTTSSEEEEEEECTTSC
T ss_pred EeeCCCCCCCCCeeEEEEEECCCCceEeec-----------------c-CCCCc-eeEeeEEEECCCCEEEEEEeCCCCC
Confidence 4578999999765421110 0 01122 2489999999999999988765
Q ss_pred --cEEEEECCCC
Q 004468 302 --HVYLMDVNHA 311 (751)
Q Consensus 302 --~I~lwdl~~~ 311 (751)
.|++||+.++
T Consensus 283 ~~~v~~~d~~~g 294 (706)
T 2z3z_A 283 ECKVNAYDAETG 294 (706)
T ss_dssp EEEEEEEETTTC
T ss_pred eeEEEEEECCCC
Confidence 8999998874
No 148
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.69 E-value=1.3e-15 Score=161.31 Aligned_cols=253 Identities=9% Similarity=0.051 Sum_probs=169.6
Q ss_pred cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeC-CCcEEEEeCCCCeE-EEEecccCCcceEEEEEec
Q 004468 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKL-LHSIETGHSANVFCTKFVP 103 (751)
Q Consensus 26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~-Dg~I~IWd~~~~~~-~~~l~~~h~~~V~~v~fsp 103 (751)
.+..+.+++. .+.+.+..+..+...+ +++|+|+|++|++++. ++.|.+||+.+++. ...+ ..+...+.+++|+|
T Consensus 18 ~~~~v~~~d~--~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~s~ 93 (331)
T 3u4y_A 18 HLRRISFFST--DTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI-QEGQSSMADVDITP 93 (331)
T ss_dssp GGTEEEEEET--TTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE-EECSSCCCCEEECT
T ss_pred CCCeEEEEeC--cccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec-ccCCCCccceEECC
Confidence 3456677654 3445566666677777 9999999996666655 89999999998887 6555 56666666699999
Q ss_pred CCCCcEEEEEECCC---cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCc-EEEEecCC
Q 004468 104 ETSDELVVSGAGDA---EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-LRQHDFRQ 179 (751)
Q Consensus 104 ~s~~~~l~sgs~Dg---~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~-I~iwDlr~ 179 (751)
+ +++|+++..++ .|.+||+... +.+..+.. ...+.+++|+|++..++++...++. |.+|++..
T Consensus 94 d--g~~l~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 94 D--DQFAVTVTGLNHPFNMQSYSFLKN----------KFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp T--SSEEEECCCSSSSCEEEEEETTTT----------EEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred C--CCEEEEecCCCCcccEEEEECCCC----------CeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 9 78888555553 8999999864 33444443 4456899999965557777777788 99999985
Q ss_pred CCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCc-EEEEEeCCCeEEEEeCCCCCC---ccccC
Q 004468 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH-LLLVGGSDAFARLYDRRMLPP---LTSCQ 255 (751)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~sgs~D~~IriwD~~~~~~---~~~~~ 255 (751)
.... .+.. .. .+ .....+..++|+|+ ++ +++++..++.|++||+.+.+. +..+.
T Consensus 161 ~g~~--------------~~~~-~~--~~----~~~~~~~~~~~spd-g~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~ 218 (331)
T 3u4y_A 161 DGVL--------------FDTG-QE--FI----SGGTRPFNITFTPD-GNFAFVANLIGNSIGILETQNPENITLLNAVG 218 (331)
T ss_dssp TCCE--------------EEEE-EE--EE----CSSSSEEEEEECTT-SSEEEEEETTTTEEEEEECSSTTSCEEEEEEE
T ss_pred CCcE--------------eecC-Cc--cc----cCCCCccceEECCC-CCEEEEEeCCCCeEEEEECCCCcccceeeecc
Confidence 4311 1110 00 00 11234689999996 55 555566789999999987654 21110
Q ss_pred CCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCcceeeeec------CC---Cce
Q 004468 256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAMRYTV------GD---ASK 325 (751)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s-~d~~I~lwdl~~~~~~~~~~~~------~~---~~~ 325 (751)
. ...+..++|+|||++|+++. .++.|.+||+.++......... .. ...
T Consensus 219 --------------------~--~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (331)
T 3u4y_A 219 --------------------T--NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGAN 276 (331)
T ss_dssp --------------------C--SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCC
T ss_pred --------------------C--CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCccccc
Confidence 0 11367899999999887765 4789999999986532211111 11 113
Q ss_pred eEEeCCCCCCcccC
Q 004468 326 IMSFTPTLNGLELQ 339 (751)
Q Consensus 326 ~~~~sp~~~~~~~~ 339 (751)
.++|+|+...+.+.
T Consensus 277 ~~~~spdg~~l~v~ 290 (331)
T 3u4y_A 277 QMALNKTETKLFIS 290 (331)
T ss_dssp CEEECTTSSEEEEE
T ss_pred ceEECCCCCEEEEe
Confidence 36888887766443
No 149
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.69 E-value=3e-15 Score=159.76 Aligned_cols=241 Identities=9% Similarity=0.056 Sum_probs=168.0
Q ss_pred cccccEEeccCCCcEEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEecccCCc--------ceEEEEEecCCCCcE
Q 004468 39 RLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSA--------NVFCTKFVPETSDEL 109 (751)
Q Consensus 39 ~~~~~~~L~gH~~~V~~l~~s~dg~~L-aSgs~Dg~I~IWd~~~~~~~~~l~~~h~~--------~V~~v~fsp~s~~~~ 109 (751)
+.+.+..+.. ...+..++|+|+|++| +++..++.|.+||..+++.+..+..++.. .+.+++|+|+ +++
T Consensus 78 ~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~ 154 (353)
T 3vgz_A 78 TLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDA--TNT 154 (353)
T ss_dssp TCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETT--TTE
T ss_pred CCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCC--CCE
Confidence 4445555553 3457889999999955 55566899999999999988877433222 2789999999 676
Q ss_pred EEEEE--CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCC
Q 004468 110 VVSGA--GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG 187 (751)
Q Consensus 110 l~sgs--~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~ 187 (751)
+++++ .++.|.+||+.+. +.+..+..+...+..++|+| ++..+++++.++.|.+||+.+++..
T Consensus 155 l~~~~~~~~~~i~~~d~~~~----------~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~---- 219 (353)
T 3vgz_A 155 VYISGIGKESVIWVVDGGNI----------KLKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKIL---- 219 (353)
T ss_dssp EEEEEESSSCEEEEEETTTT----------EEEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEEE----
T ss_pred EEEEecCCCceEEEEcCCCC----------ceEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeEE----
Confidence 66555 4889999999864 34555655666788999999 5677778888999999999876521
Q ss_pred CCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEE-eCCCeEEEEeCCCCCCccccCCCCCCCCcccc
Q 004468 188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG-GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (751)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sg-s~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~ 266 (751)
..... ...++...+..++|+|+ +++++++ ..++.|.+||+.+.+.+..+..
T Consensus 220 ----------~~~~~-------~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---------- 271 (353)
T 3vgz_A 220 ----------SRKKL-------LDDGKEHFFINISLDTA-RQRAFITDSKAAEVLVVDTRNGNILAKVAA---------- 271 (353)
T ss_dssp ----------EEEEC-------CCSSSCCCEEEEEEETT-TTEEEEEESSSSEEEEEETTTCCEEEEEEC----------
T ss_pred ----------EEEEc-------CCCCCCcccceEEECCC-CCEEEEEeCCCCEEEEEECCCCcEEEEEEc----------
Confidence 11100 01113446788999996 5555544 4569999999987664332210
Q ss_pred ccccccccCCccccceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccC
Q 004468 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ 339 (751)
Q Consensus 267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s-~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~ 339 (751)
+. ...++|+|+|++|+++. .++.|.+||+.+++. ...+.....+..++|+|+.+.+.+.
T Consensus 272 ---------~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~v~ 331 (353)
T 3vgz_A 272 ---------PE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV-VKTFDTPTHPNSLALSADGKTLYVS 331 (353)
T ss_dssp ---------SS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEEEECCSEEEEEEECTTSCEEEEE
T ss_pred ---------CC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeE-EEEEecCCCCCeEEEcCCCCEEEEE
Confidence 11 24589999999777666 589999999988543 3334445567788999987755444
No 150
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.69 E-value=1.2e-15 Score=161.55 Aligned_cols=243 Identities=11% Similarity=0.121 Sum_probs=162.2
Q ss_pred ccccccchhhhccccccEEecc-CCC-cEEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEecccC----CcceEEE
Q 004468 27 NHSLQMHSSLVRRLSQERELEG-HQG-CVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGH----SANVFCT 99 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~g-H~~-~V~~l~~s~dg~~L-aSgs~Dg~I~IWd~~~~~~~~~l~~~h----~~~V~~v 99 (751)
+..+.+++. .+.+.+..+.. +.. .+..++|+|+|++| ++++.++.|.+||+.+++.+..+..++ ...+.++
T Consensus 10 ~~~v~~~d~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (337)
T 1pby_B 10 PDKLVVIDT--EKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGA 87 (337)
T ss_dssp TTEEEEEET--TTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCE
T ss_pred CCeEEEEEC--CCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccce
Confidence 345555543 33455555552 222 48899999999765 566678999999999998887774333 2368899
Q ss_pred EEecCCCCcEEEEEE------------CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe
Q 004468 100 KFVPETSDELVVSGA------------GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS 167 (751)
Q Consensus 100 ~fsp~s~~~~l~sgs------------~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s 167 (751)
+|+|+ +++|++++ .++.|.+||+.+. +.+..+.. ...+..++|+|+ ++.|+++
T Consensus 88 ~~s~d--g~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~-~~~~~~~~~s~d-g~~l~~~- 152 (337)
T 1pby_B 88 ALSPD--GKTLAIYESPVRLELTHFEVQPTRVALYDAETL----------SRRKAFEA-PRQITMLAWARD-GSKLYGL- 152 (337)
T ss_dssp EECTT--SSEEEEEEEEEEECSSCEEECCCEEEEEETTTT----------EEEEEEEC-CSSCCCEEECTT-SSCEEEE-
T ss_pred EECCC--CCEEEEEecccccccccccccCceEEEEECCCC----------cEEEEEeC-CCCcceeEECCC-CCEEEEe-
Confidence 99999 78888776 5799999999853 23444443 456788999994 4555555
Q ss_pred CCCcEEEEecCCCCCCCCCCCCC--------Cc----------c------------------------ceEEEecccCce
Q 004468 168 EDGTLRQHDFRQGSSCPPAGSSH--------QE----------C------------------------RNILLDLRCGAK 205 (751)
Q Consensus 168 ~Dg~I~iwDlr~~~~~~~~~~~~--------~~----------~------------------------~~~l~~~~~~~~ 205 (751)
++.|.+||+.+++......... .+ . ...++++..+..
T Consensus 153 -~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 231 (337)
T 1pby_B 153 -GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM 231 (337)
T ss_dssp -SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred -CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence 6899999998765321000000 00 0 123455544433
Q ss_pred ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEE
Q 004468 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (751)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v 285 (751)
. ......+...+.+++|+|+ +++++++ ++.|++||+.+.+.+..+. .+ ..+.++
T Consensus 232 ~-~~~~~~~~~~~~~~~~s~d-g~~l~~~--~~~v~~~d~~~~~~~~~~~-------------------~~---~~~~~~ 285 (337)
T 1pby_B 232 A-MREVRIMDVFYFSTAVNPA-KTRAFGA--YNVLESFDLEKNASIKRVP-------------------LP---HSYYSV 285 (337)
T ss_dssp E-EEEEEECSSCEEEEEECTT-SSEEEEE--ESEEEEEETTTTEEEEEEE-------------------CS---SCCCEE
T ss_pred e-EeecCCCCCceeeEEECCC-CCEEEEe--CCeEEEEECCCCcCcceec-------------------CC---CceeeE
Confidence 2 1111123345678999995 6777777 7999999998765332210 00 136789
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCCc
Q 004468 286 TFSPNGEEVLLSYSGEHVYLMDVNHAGG 313 (751)
Q Consensus 286 ~fspdg~~Ll~~s~d~~I~lwdl~~~~~ 313 (751)
+|+|+|++|++++.++.|++||+.+++.
T Consensus 286 ~~s~dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 286 NVSTDGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp EECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred EECCCCCEEEEEcCCCcEEEEECcCCcE
Confidence 9999999999998999999999998653
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.68 E-value=2e-15 Score=178.20 Aligned_cols=220 Identities=10% Similarity=0.055 Sum_probs=135.9
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCc---ceEEEEEecCCCCcEEEEEEC---------CCcEEEE
Q 004468 55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA---NVFCTKFVPETSDELVVSGAG---------DAEVRLF 122 (751)
Q Consensus 55 ~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~---~V~~v~fsp~s~~~~l~sgs~---------Dg~V~vw 122 (751)
.++|+|+|+++++ +.|++|++||+.+++....+ .+|.. .|.+++|+|+ |++|++++. |+.|++|
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~SpD--g~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTIL-SNRTMKSVNASNYGLSPD--RQFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEE-CHHHHHTTTCSEEEECTT--SSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEE-ccccccccceeeEEECCC--CCeEEEEecCceeEEeecceEEEEE
Confidence 6799999965555 46999999999998877666 45543 4999999999 899998876 7899999
Q ss_pred ECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004468 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (751)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~ 202 (751)
|+.++.... ...+ ...+..++|+| +++.|+.+. |+.|++||+.+++.......+.. ..+++
T Consensus 96 d~~~g~~~~--------~~~l---~~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~---~~v~~--- 156 (719)
T 1z68_A 96 DLSNGEFVR--------GNEL---PRPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE---NKIFN--- 156 (719)
T ss_dssp ETTTTEECC--------SSCC---CSSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBT---TTEEE---
T ss_pred ECCCCcccc--------ceec---CcccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc---CCeEc---
Confidence 998642100 0112 24688999999 567777765 78999999988753211100000 00000
Q ss_pred CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC----------------------------------eEEEEeCCCC
Q 004468 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA----------------------------------FARLYDRRML 248 (751)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~----------------------------------~IriwD~~~~ 248 (751)
|....+... .......+++|+|+ +++|++++.|. .|++||+.+.
T Consensus 157 g~~~~v~~e-e~~~~~~~~~wSPD-G~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~ 234 (719)
T 1z68_A 157 GIPDWVYEE-EMLATKYALWWSPN-GKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP 234 (719)
T ss_dssp SSCCHHHHH-HTTCSSCCEEECTT-SSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH
T ss_pred ccccceeee-ecccCcccEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC
Confidence 000000000 00011258999994 78888887652 7788888754
Q ss_pred CCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCC----CcEEEEE----CCCCC
Q 004468 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG----EHVYLMD----VNHAG 312 (751)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d----~~I~lwd----l~~~~ 312 (751)
+..... +...+..+ .++.. .+..++||||++.+++.... ..|++|| +.++.
T Consensus 235 ~~~~~~----------~~~~~~~~--~~~~~-~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~ 293 (719)
T 1z68_A 235 AYVGPQ----------EVPVPAMI--ASSDY-YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD 293 (719)
T ss_dssp HHHCCE----------ECCCCHHH--HTSCE-EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE
T ss_pred Ccccee----------EccCCccC--CCCcc-eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc
Confidence 321000 00000001 12222 48999999998776664433 2488999 76643
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.65 E-value=8.4e-15 Score=156.50 Aligned_cols=247 Identities=11% Similarity=0.075 Sum_probs=156.3
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeC---CCcEEEEeCCCCe--EEEEecccCCcceEEEEEecCCCCcEEEEEE-CCCcEE
Q 004468 47 EGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGA-GDAEVR 120 (751)
Q Consensus 47 ~gH~~~V~~l~~s~dg~~LaSgs~---Dg~I~IWd~~~~~--~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs-~Dg~V~ 120 (751)
..+...+..++|+|+|+ |++++. ++.|.+|++.++. .+..+ ..+...+..++|+|+ +++|++++ .++.|.
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~~~~~p~~~a~spd--g~~l~~~~~~~~~v~ 111 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV-VAPGTPPAYVAVDEA--RQLVYSANYHKGTAE 111 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE-EEESCCCSEEEEETT--TTEEEEEETTTTEEE
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee-ecCCCCCEEEEECCC--CCEEEEEeCCCCEEE
Confidence 44567788999999999 554443 6899999997665 33343 457788999999999 78888777 789999
Q ss_pred EEECCCCCCCCCCCCCCCCceeecc---------cCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC-CCCCCCCCCCC
Q 004468 121 LFNLSRFSGRGLDDNAITPSALYQC---------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ-GSSCPPAGSSH 190 (751)
Q Consensus 121 vwd~~~~~~~~~~~~~~~~~~~~~~---------h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~-~~~~~~~~~~~ 190 (751)
+|++... +.. ..+..+.. +...+.+++|+|++ +++++...++.|++||+.. ++.
T Consensus 112 v~~~~~~-g~~------~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~~~v~~~~~~~~g~~-------- 175 (347)
T 3hfq_A 112 VMKIAAD-GAL------TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGSDKVYVYNVSDAGQL-------- 175 (347)
T ss_dssp EEEECTT-SCE------EEEEEEECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTTTEEEEEEECTTSCE--------
T ss_pred EEEeCCC-CCe------eecceeecCCCCCCccccCCCceEEEECCCC-cEEEEeCCCCEEEEEEECCCCcE--------
Confidence 9999631 110 11222211 22358899999954 5887888899999999983 220
Q ss_pred CccceEEEecccCceecccCCCCCccceEEEEEeCCCCc-EEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccc
Q 004468 191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH-LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP 269 (751)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (751)
..+... ... ....+..++|+|+ ++ +++++..++.|++|++........ .+.....
T Consensus 176 ----~~~~~~--------~~~--~g~~p~~~~~spd-g~~l~v~~~~~~~v~v~~~~~~~g~~~---------~~~~~~~ 231 (347)
T 3hfq_A 176 ----SEQSVL--------TME--AGFGPRHLVFSPD-GQYAFLAGELSSQIASLKYDTQTGAFT---------QLGIVKT 231 (347)
T ss_dssp ----EEEEEE--------ECC--TTCCEEEEEECTT-SSEEEEEETTTTEEEEEEEETTTTEEE---------EEEEEES
T ss_pred ----EEeeeE--------EcC--CCCCCceEEECCC-CCEEEEEeCCCCEEEEEEecCCCCceE---------Eeeeeee
Confidence 001000 000 1124667999996 56 555567789999999874210000 0000000
Q ss_pred cccccCCccccceEEEEEcCCCCEEEE-EeCCCcEEEEECCCCCccee---eeecCCCceeEEeCCCCCCcccC
Q 004468 270 MHLSEHGRSSLHLTHVTFSPNGEEVLL-SYSGEHVYLMDVNHAGGRAM---RYTVGDASKIMSFTPTLNGLELQ 339 (751)
Q Consensus 270 ~~~~~~g~~~~~vt~v~fspdg~~Ll~-~s~d~~I~lwdl~~~~~~~~---~~~~~~~~~~~~~sp~~~~~~~~ 339 (751)
..........+..++|+|||++|++ +..++.|.+|++...+.... ....+..+..++|+|+.+.+...
T Consensus 232 --~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~ 303 (347)
T 3hfq_A 232 --IPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVV 303 (347)
T ss_dssp --SCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEE
T ss_pred --cCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEE
Confidence 0000000124889999999998855 45689999999974321111 12224467789999988766544
No 153
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.65 E-value=4.4e-14 Score=151.81 Aligned_cols=212 Identities=13% Similarity=0.111 Sum_probs=127.4
Q ss_pred CCEEEEEe----CCCcEEEEeC--CCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC----CcEEEEECCCCCCCC
Q 004468 62 GSLLISGS----DDTHINVWSY--SSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD----AEVRLFNLSRFSGRG 131 (751)
Q Consensus 62 g~~LaSgs----~Dg~I~IWd~--~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D----g~V~vwd~~~~~~~~ 131 (751)
..++..|+ .++.|.+|.+ .+++....... +...+..++|+|+ +++|++++.+ +.|.+|++....+..
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spd--g~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSAD--GKFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTT--SSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCC--CCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 34555553 4678999965 45654433322 7788899999999 8889988876 799999987532211
Q ss_pred CCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCC
Q 004468 132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 211 (751)
Q Consensus 132 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 211 (751)
..+.....+...+..+++ ++..++++...+++|.+|++......... ...+.....+. ...
T Consensus 90 ------~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~-------~~~~~~~g~~~----~~~ 150 (361)
T 3scy_A 90 ------HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPA-------SDVIEFKGSGP----DKE 150 (361)
T ss_dssp ------EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSC-------SEEEECCCCCS----CTT
T ss_pred ------EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCccc-------ceeEEccCCCC----Ccc
Confidence 223344445566777777 34444544457899999999764322110 00110000000 000
Q ss_pred CCCccceEEEEEeCCCCcEE-EEEeCCCeEEEEeCCCCCC------ccccCCCCCCCCccccccccccccCCccccceEE
Q 004468 212 PKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRMLPP------LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (751)
Q Consensus 212 ~~~~~~v~~i~~sp~~~~~l-~sgs~D~~IriwD~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~ 284 (751)
......+.+++|+|+ ++++ +++..++.|++|++..... +.... ..... .. .....+..
T Consensus 151 ~~~~~~~~~~~~spd-g~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~-------~~~~~---~~----~~~~~~~~ 215 (361)
T 3scy_A 151 RQTMPHLHCVRITPD-GKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG-------TPEAF---KV----APGSGPRH 215 (361)
T ss_dssp TCSSCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE-------EEEEE---EC----CTTCCEEE
T ss_pred ccCCCcceEEEECCC-CCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc-------cccce---ec----CCCCCCeE
Confidence 112345788999995 6655 4455689999999875331 10000 00000 00 11124788
Q ss_pred EEEcCCCCEEEEEe-CCCcEEEEECCC
Q 004468 285 VTFSPNGEEVLLSY-SGEHVYLMDVNH 310 (751)
Q Consensus 285 v~fspdg~~Ll~~s-~d~~I~lwdl~~ 310 (751)
++|+|||++|+++. .++.|++||+.+
T Consensus 216 ~~~spdg~~l~v~~~~~~~v~v~~~~~ 242 (361)
T 3scy_A 216 LIFNSDGKFAYLINEIGGTVIAFRYAD 242 (361)
T ss_dssp EEECTTSSEEEEEETTTCEEEEEEEET
T ss_pred EEEcCCCCEEEEEcCCCCeEEEEEecC
Confidence 99999999888777 589999999875
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.64 E-value=9.7e-15 Score=156.01 Aligned_cols=239 Identities=10% Similarity=0.117 Sum_probs=151.4
Q ss_pred cccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEe-CCCcEEEEeCC-CC--eEEEEecc-c-------CCcc
Q 004468 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGS-DDTHINVWSYS-SR--KLLHSIET-G-------HSAN 95 (751)
Q Consensus 28 ~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs-~Dg~I~IWd~~-~~--~~~~~l~~-~-------h~~~ 95 (751)
..+.+|+....+++.+..+..|...+..++|+|+|++|++++ .++.|.+|++. ++ ..+..+.. + +...
T Consensus 63 ~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~ 142 (347)
T 3hfq_A 63 GGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSH 142 (347)
T ss_dssp EEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCC
T ss_pred ceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCC
Confidence 445555543344556666677888999999999999998888 78999999985 33 33333311 1 2235
Q ss_pred eEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeeccc-CCceeEEEEecCCCCEEEEEeCCCcEEE
Q 004468 96 VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH-TRRVKKLAVEVGNPHVVWSASEDGTLRQ 174 (751)
Q Consensus 96 V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~l~s~s~Dg~I~i 174 (751)
+.+++|+|+ ++++++...++.|++|++... +.. .....+..+ ...+..++|+|++..+++++..++.|.+
T Consensus 143 ~~~~~~spd--g~l~v~~~~~~~v~~~~~~~~-g~~------~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v 213 (347)
T 3hfq_A 143 IHYTDLTPD--NRLAVIDLGSDKVYVYNVSDA-GQL------SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIAS 213 (347)
T ss_dssp EEEEEECTT--SCEEEEETTTTEEEEEEECTT-SCE------EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred ceEEEECCC--CcEEEEeCCCCEEEEEEECCC-CcE------EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEE
Confidence 889999999 677777778899999999831 111 112222222 3367889999954336666778899999
Q ss_pred EecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEE-EEEeCCCeEEEEeCCCCCCccc
Q 004468 175 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRMLPPLTS 253 (751)
Q Consensus 175 wDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~sgs~D~~IriwD~~~~~~~~~ 253 (751)
|++...... ...+..... ..........+..++|+|+ +++| ++...++.|.+||+.......
T Consensus 214 ~~~~~~~g~----------~~~~~~~~~-----~~~~~~~~~~~~~i~~spd-G~~l~v~~~~~~~v~v~~~~~~g~~~- 276 (347)
T 3hfq_A 214 LKYDTQTGA----------FTQLGIVKT-----IPADYTAHNGAAAIRLSHD-GHFLYVSNRGYNTLAVFAVTADGHLT- 276 (347)
T ss_dssp EEEETTTTE----------EEEEEEEES-----SCTTCCSCCEEEEEEECTT-SCEEEEEEETTTEEEEEEECGGGCEE-
T ss_pred EEecCCCCc----------eEEeeeeee-----cCCCCCCCCcceeEEECCC-CCEEEEEeCCCCEEEEEEECCCCcEE-
Confidence 998752100 001110000 0000011245889999996 6655 666779999999986311100
Q ss_pred cCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC-CCcEEEEECC
Q 004468 254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVN 309 (751)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~~I~lwdl~ 309 (751)
.+..+ + .+ ...+..++|+|||++|+++.. ++.|.+|+++
T Consensus 277 ---------~~~~~-~------~~-~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 277 ---------LIQQI-S------TE-GDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp ---------EEEEE-E------CS-SSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ---------EeEEE-e------cC-CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 01111 0 01 113678999999999988876 5899999554
No 155
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.64 E-value=2.4e-15 Score=177.48 Aligned_cols=276 Identities=8% Similarity=0.025 Sum_probs=168.4
Q ss_pred ccccccchhhhccccccEEeccCCC---cEEEEEECCCCCEEEEEeCC---------CcEEEEeCCCCeEEEEe--cccC
Q 004468 27 NHSLQMHSSLVRRLSQERELEGHQG---CVNAISWNSKGSLLISGSDD---------THINVWSYSSRKLLHSI--ETGH 92 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~gH~~---~V~~l~~s~dg~~LaSgs~D---------g~I~IWd~~~~~~~~~l--~~~h 92 (751)
+..+.+|+. .+.+....+.+|.. .|.+++|||||++||+++.+ +.|.|||+.+++. ..+ ..+|
T Consensus 36 dg~i~~~d~--~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~ 112 (723)
T 1xfd_A 36 KGTVRLWNV--ETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVS 112 (723)
T ss_dssp SSCEEEBCG--GGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCC
T ss_pred CCCEEEEEC--CCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccc
Confidence 445666654 34455667777765 49999999999999999875 7788999998865 233 1345
Q ss_pred CcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCC------------------ceeEEE
Q 004468 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR------------------RVKKLA 154 (751)
Q Consensus 93 ~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~------------------~V~~l~ 154 (751)
...+.+++|+|+ |+.|+.++. +.|++||+..+. .......+.. .+.+++
T Consensus 113 ~~~~~~~~~SPd--G~~la~~~~-~~i~~~~~~~g~----------~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~ 179 (723)
T 1xfd_A 113 NAKLQYAGWGPK--GQQLIFIFE-NNIYYCAHVGKQ----------AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW 179 (723)
T ss_dssp SCCCSBCCBCSS--TTCEEEEET-TEEEEESSSSSC----------CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred cccccccEECCC--CCEEEEEEC-CeEEEEECCCCc----------eEEEecCCCCCceECcccceeEEEEeccCcceEE
Confidence 556999999999 899998886 799999998642 2333333332 237899
Q ss_pred EecCCCCEEEEEeCC-CcEEEEecCCCCCCC----------CCCCCCCccceEEEecccCce-ecccCC---CCCccceE
Q 004468 155 VEVGNPHVVWSASED-GTLRQHDFRQGSSCP----------PAGSSHQECRNILLDLRCGAK-RSLADP---PKQTLSLK 219 (751)
Q Consensus 155 ~sp~~~~~l~s~s~D-g~I~iwDlr~~~~~~----------~~~~~~~~~~~~l~~~~~~~~-~~~~~~---~~~~~~v~ 219 (751)
|+| +++.|++++.| +.+.+|++....... ..+.........++++..+.. ..+... ..+...+.
T Consensus 180 ~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~ 258 (723)
T 1xfd_A 180 WSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYIT 258 (723)
T ss_dssp ECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEE
T ss_pred ECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeE
Confidence 999 56777777654 456666654221100 000001112344555555442 222111 01256789
Q ss_pred EEEEeCCCCcEEEEEeC----CCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccce----EEEEEcCCC
Q 004468 220 SCDISSTRPHLLLVGGS----DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL----THVTFSPNG 291 (751)
Q Consensus 220 ~i~~sp~~~~~l~sgs~----D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v----t~v~fspdg 291 (751)
+++|+|+ +++|++.+. +..|++||+.+++....+. . +....+ ..++|+|||
T Consensus 259 ~~~~SpD-g~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~-------------~-------~~~~~~~~~~~~~~~spdg 317 (723)
T 1xfd_A 259 MVKWATS-TKVAVTWLNRAQNVSILTLCDATTGVCTKKHE-------------D-------ESEAWLHRQNEEPVFSKDG 317 (723)
T ss_dssp EEEESSS-SEEEEEEEETTSCEEEEEEEETTTCCEEEEEE-------------E-------ECSSCCCCCCCCCEECTTS
T ss_pred EEEEeCC-CeEEEEEEcCCCCeEEEEEEeCCCCcceEEEE-------------e-------ccCCEEeccCCCceEcCCC
Confidence 9999995 677766653 3689999998765321110 0 000012 367999999
Q ss_pred CEEEEE--eCCC------cEEEEEC-CCCCc--ceeeee-cCCCceeEEeCCCCCCcccCC
Q 004468 292 EEVLLS--YSGE------HVYLMDV-NHAGG--RAMRYT-VGDASKIMSFTPTLNGLELQP 340 (751)
Q Consensus 292 ~~Ll~~--s~d~------~I~lwdl-~~~~~--~~~~~~-~~~~~~~~~~sp~~~~~~~~~ 340 (751)
+.|+.. ..++ .|++||+ .++.. ...... .......++|+|+.+.+.+..
T Consensus 318 ~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~ 378 (723)
T 1xfd_A 318 RKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLS 378 (723)
T ss_dssp CSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEE
T ss_pred CeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEE
Confidence 987754 4566 5777883 44320 222221 122233468999988776543
No 156
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.64 E-value=1.9e-15 Score=178.97 Aligned_cols=230 Identities=10% Similarity=0.004 Sum_probs=152.7
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe--EEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004468 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (751)
Q Consensus 52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~--~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~ 129 (751)
.|.+++|||||++|++++. +.|.+||+.++. .+..+ ..|...+.+++|+|+ |++|+.++ ++.|++||+..+.
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l-~~~~~~~~~~~~SPD--G~~la~~~-~~~i~~~d~~~g~- 183 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQL-THGEGFATDAKLSPK--GGFVSFIR-GRNLWVIDLASGR- 183 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBC-CCSSSCEEEEEECTT--SSEEEEEE-TTEEEEEETTTTE-
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEc-ccCCcccccccCCCC--CCEEEEEe-CCcEEEEecCCCC-
Confidence 3889999999999999987 899999998872 34455 678889999999999 89999887 4699999998642
Q ss_pred CCCCCCCCCCceeecccCC----------------ceeEEEEecCCCCEEEEEeCCC-----------------------
Q 004468 130 RGLDDNAITPSALYQCHTR----------------RVKKLAVEVGNPHVVWSASEDG----------------------- 170 (751)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~----------------~V~~l~~sp~~~~~l~s~s~Dg----------------------- 170 (751)
.......+.. .+..++|+| +++.|++++.|+
T Consensus 184 ---------~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~ 253 (741)
T 2ecf_A 184 ---------QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRY 253 (741)
T ss_dssp ---------EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred ---------EEEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence 1222222222 257899999 567777776665
Q ss_pred ----------cEEEEecCC-CCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeC---
Q 004468 171 ----------TLRQHDFRQ-GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS--- 236 (751)
Q Consensus 171 ----------~I~iwDlr~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~--- 236 (751)
.|++||+.+ ++ ...+.....+...+..++| |+ +++|++++.
T Consensus 254 ~~~g~~~~~~~l~~~d~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~-pD-g~~l~~~~~~~~ 308 (741)
T 2ecf_A 254 PAAGDANVQVKLGVISPAEQAQ-----------------------TQWIDLGKEQDIYLARVNW-RD-PQHLSFQRQSRD 308 (741)
T ss_dssp CBTTSCCCEEEEEEECSSTTCC-----------------------CEEECCCSCSSEEEEEEEE-EE-TTEEEEEEEETT
T ss_pred CCCCCCCCeeEEEEEECCCCCc-----------------------eEEecCCCCcceEEEEEEe-CC-CCEEEEEEeccc
Confidence 555566554 43 2112212235678899999 95 677776653
Q ss_pred --CCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcc
Q 004468 237 --DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR 314 (751)
Q Consensus 237 --D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~ 314 (751)
+..|++||+.+++....+. .+.. +... .+..++|+|||+++++++.++.++||.++..+..
T Consensus 309 ~~~~~i~~~d~~~g~~~~~~~--------------~~~~--~~~~-~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~~ 371 (741)
T 2ecf_A 309 QKKLDLVEVTLASNQQRVLAH--------------ETSP--TWVP-LHNSLRFLDDGSILWSSERTGFQHLYRIDSKGKA 371 (741)
T ss_dssp SSEEEEEEEETTTCCEEEEEE--------------EECS--SCCC-CCSCCEECTTSCEEEEECTTSSCEEEEECSSSCE
T ss_pred CCeEEEEEEECCCCceEEEEE--------------cCCC--CcCC-cCCceEECCCCeEEEEecCCCccEEEEEcCCCCe
Confidence 6789999998765322110 0000 0000 2457899999998888888988888876632222
Q ss_pred eeeeecCCCceeE-EeCCCCCCcccC
Q 004468 315 AMRYTVGDASKIM-SFTPTLNGLELQ 339 (751)
Q Consensus 315 ~~~~~~~~~~~~~-~~sp~~~~~~~~ 339 (751)
.....+...+..+ .|+|+.+.+.+.
T Consensus 372 ~~l~~~~~~v~~~~~~s~dg~~l~~~ 397 (741)
T 2ecf_A 372 AALTHGNWSVDELLAVDEKAGLAYFR 397 (741)
T ss_dssp EESCCSSSCEEEEEEEETTTTEEEEE
T ss_pred eeeeecceEEEeEeEEeCCCCEEEEE
Confidence 2222233333343 589988766544
No 157
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.61 E-value=2.1e-14 Score=152.74 Aligned_cols=245 Identities=10% Similarity=0.060 Sum_probs=157.8
Q ss_pred ccccccchhhhccccccEEeccCC-CcEEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEecccC-----CcceEEE
Q 004468 27 NHSLQMHSSLVRRLSQERELEGHQ-GCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGH-----SANVFCT 99 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~gH~-~~V~~l~~s~dg~~L-aSgs~Dg~I~IWd~~~~~~~~~l~~~h-----~~~V~~v 99 (751)
+..+.+++. .+.+.++++..+. ..+..++|+|+|+++ +++..++.|.+||+.+++.+..+..++ ...+.++
T Consensus 20 ~~~v~~~d~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~ 97 (349)
T 1jmx_B 20 PNNLHVVDV--ASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSF 97 (349)
T ss_dssp TTEEEEEET--TTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCE
T ss_pred CCeEEEEEC--CCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccce
Confidence 456666653 3445566666443 257899999999865 556678999999999998887774333 3448899
Q ss_pred EEecCCCCcEEEEEECC------------CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe
Q 004468 100 KFVPETSDELVVSGAGD------------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS 167 (751)
Q Consensus 100 ~fsp~s~~~~l~sgs~D------------g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s 167 (751)
+|+|+ +++|++++.+ +.|.+||+.++... +.+..+. +...+.+++|+|+ ++++ .++
T Consensus 98 ~~spd--g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-------~~~~~~~-~~~~~~~~~~s~d-g~l~-~~~ 165 (349)
T 1jmx_B 98 AISPD--GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA-------KPVRTFP-MPRQVYLMRAADD-GSLY-VAG 165 (349)
T ss_dssp EECTT--SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB-------CCSEEEE-CCSSCCCEEECTT-SCEE-EES
T ss_pred EECCC--CCEEEEEcccccccccccccCCCeEEEEECCCcccc-------ceeeecc-CCCcccceeECCC-CcEE-Ecc
Confidence 99999 7888888765 89999999853211 2233443 3346889999994 4554 444
Q ss_pred CCCcEEEEecCCCCCCCCCCCCC-----------------Ccc---------------------------ceEEEecccC
Q 004468 168 EDGTLRQHDFRQGSSCPPAGSSH-----------------QEC---------------------------RNILLDLRCG 203 (751)
Q Consensus 168 ~Dg~I~iwDlr~~~~~~~~~~~~-----------------~~~---------------------------~~~l~~~~~~ 203 (751)
. .|.+||+.+++......... ... ..+.++...+
T Consensus 166 ~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
T 1jmx_B 166 P--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG 243 (349)
T ss_dssp S--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC
T ss_pred C--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCC
Confidence 3 49999998876432111000 000 0000122222
Q ss_pred ceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceE
Q 004468 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (751)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt 283 (751)
....+.. ......+.+++|+|.++++++++ ++.|.+||+.+.+.+..+. .++ .+.
T Consensus 244 ~~~~~~~-~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-------------------~~~---~~~ 298 (349)
T 1jmx_B 244 KTHTQEF-ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN-------------------LDH---TYY 298 (349)
T ss_dssp CEEEEEE-EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE-------------------CSS---CCC
T ss_pred cEEeccc-ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc-------------------CCC---Ccc
Confidence 2111111 11223567889999336777777 8899999998765332210 011 267
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468 284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 284 ~v~fspdg~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
+++|+|+|++|++++.++.|++||+.+++
T Consensus 299 ~~~~s~dg~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 299 CVAFDKKGDKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp EEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred ceEECCCCCEEEEecCCCeEEEEeccccc
Confidence 89999999999998889999999998854
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.58 E-value=5.3e-14 Score=149.56 Aligned_cols=241 Identities=11% Similarity=0.045 Sum_probs=156.3
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcE-EEEEECCCcEEEEECCCCCCCCCC
Q 004468 55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDEL-VVSGAGDAEVRLFNLSRFSGRGLD 133 (751)
Q Consensus 55 ~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~-l~sgs~Dg~V~vwd~~~~~~~~~~ 133 (751)
.+++++++.++++++.+++|.+||+.+++.+..+..+....+..++|+|+ +++ ++++..++.|.+||+.++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~~~v~~~~~~~i~~~d~~t~------ 75 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPD--NRTAYVLNNHYGDIYGIDLDTC------ 75 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTT--SSEEEEEETTTTEEEEEETTTT------
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCC--CCEEEEEeCCCCcEEEEeCCCC------
Confidence 45688899999999999999999999999888874333336889999999 665 456667899999999864
Q ss_pred CCCCCCceeeccc------CCceeEEEEecCCCCEEEEEeCC------------CcEEEEecCCCCCCCCCCCCCCccce
Q 004468 134 DNAITPSALYQCH------TRRVKKLAVEVGNPHVVWSASED------------GTLRQHDFRQGSSCPPAGSSHQECRN 195 (751)
Q Consensus 134 ~~~~~~~~~~~~h------~~~V~~l~~sp~~~~~l~s~s~D------------g~I~iwDlr~~~~~~~~~~~~~~~~~ 195 (751)
+.+..+..+ ...+..++|+| +++.+++++.+ +.|.+||+.+++..... .
T Consensus 76 ----~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--------~ 142 (349)
T 1jmx_B 76 ----KNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV--------R 142 (349)
T ss_dssp ----EEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS--------E
T ss_pred ----cEEEEEEcccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCcccccee--------e
Confidence 223333322 23378899999 56777777755 89999999875421000 0
Q ss_pred EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCC-CC-----Cccc----
Q 004468 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS-PP-----PCVN---- 265 (751)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~-~~-----~~~~---- 265 (751)
. .. +...+.+++|+|+ ++ +++++. .|++||+.+++.+..+..... .+ ....
T Consensus 143 ~-~~--------------~~~~~~~~~~s~d-g~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (349)
T 1jmx_B 143 T-FP--------------MPRQVYLMRAADD-GS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPH 203 (349)
T ss_dssp E-EE--------------CCSSCCCEEECTT-SC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCC
T ss_pred e-cc--------------CCCcccceeECCC-Cc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecC
Confidence 0 00 1224778899996 56 555544 499999988775543322110 00 0000
Q ss_pred -----cc-cccccc----------------------cC-C--------ccccceEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 004468 266 -----YF-CPMHLS----------------------EH-G--------RSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMD 307 (751)
Q Consensus 266 -----~~-~~~~~~----------------------~~-g--------~~~~~vt~v~fsp-dg~~Ll~~s~d~~I~lwd 307 (751)
.+ .|.... .. + .....+..++|+| +|++|+++ ++.|++||
T Consensus 204 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d 281 (349)
T 1jmx_B 204 QSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYD 281 (349)
T ss_dssp CCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEE
T ss_pred CCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEE
Confidence 00 000000 00 0 0011367889999 99999988 88999999
Q ss_pred CCCCCcceeeeecCCCceeEEeCCCCCCccc
Q 004468 308 VNHAGGRAMRYTVGDASKIMSFTPTLNGLEL 338 (751)
Q Consensus 308 l~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~ 338 (751)
+.+++. ......+..+..++|+|+.+.+..
T Consensus 282 ~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~ 311 (349)
T 1jmx_B 282 LKQRKL-IKAANLDHTYYCVAFDKKGDKLYL 311 (349)
T ss_dssp TTTTEE-EEEEECSSCCCEEEECSSSSCEEE
T ss_pred CccCeE-EEEEcCCCCccceEECCCCCEEEE
Confidence 998543 233334556778999998776655
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.57 E-value=6.8e-13 Score=142.49 Aligned_cols=270 Identities=8% Similarity=0.039 Sum_probs=160.6
Q ss_pred cccccchhhh--ccccccEEeccCCCcEEEEEECCCCCEEEEEeCC----CcEEEEeCCC--CeE--EEEecccCCcceE
Q 004468 28 HSLQMHSSLV--RRLSQERELEGHQGCVNAISWNSKGSLLISGSDD----THINVWSYSS--RKL--LHSIETGHSANVF 97 (751)
Q Consensus 28 ~~l~~~~~~i--~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~D----g~I~IWd~~~--~~~--~~~l~~~h~~~V~ 97 (751)
..+.++.... .+++.+..+ |...+..++|+|+|++|++++.+ +.|.+|++.. +.. +..+ ..+.....
T Consensus 27 ~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~-~~~~~~p~ 103 (361)
T 3scy_A 27 KGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ-KTMGADPC 103 (361)
T ss_dssp CEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE-ECSSSCEE
T ss_pred CCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe-ccCCCCcE
Confidence 3455554332 333444444 77888899999999999999886 7999998764 433 3333 33556677
Q ss_pred EEEEecCCCCcEEEEEE-CCCcEEEEECCCCCCCCCCCCCCCCcee----------ecccCCceeEEEEecCCCCEEEEE
Q 004468 98 CTKFVPETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSAL----------YQCHTRRVKKLAVEVGNPHVVWSA 166 (751)
Q Consensus 98 ~v~fsp~s~~~~l~sgs-~Dg~V~vwd~~~~~~~~~~~~~~~~~~~----------~~~h~~~V~~l~~sp~~~~~l~s~ 166 (751)
.+++ + +++|++++ .++.|.+|++... +... ..... ...+...+.+++|+|++..+++++
T Consensus 104 ~~~~--d--g~~l~~~~~~~~~v~~~~~~~~-g~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 173 (361)
T 3scy_A 104 YLTT--N--GKNIVTANYSGGSITVFPIGQD-GALL-----PASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADD 173 (361)
T ss_dssp EEEE--C--SSEEEEEETTTTEEEEEEBCTT-SCBC-----SCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEE
T ss_pred EEEE--C--CCEEEEEECCCCEEEEEEeCCC-CcCc-----ccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEe
Confidence 7777 5 56666655 6889999999752 1110 00110 111234468899999543455666
Q ss_pred eCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe-CCCeEEEEeC
Q 004468 167 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDR 245 (751)
Q Consensus 167 s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs-~D~~IriwD~ 245 (751)
..++.|++|++....................... .....+..++|+|+ ++++++++ .++.|++||+
T Consensus 174 ~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~------------~~~~~~~~~~~spd-g~~l~v~~~~~~~v~v~~~ 240 (361)
T 3scy_A 174 LGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV------------APGSGPRHLIFNSD-GKFAYLINEIGGTVIAFRY 240 (361)
T ss_dssp TTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC------------CTTCCEEEEEECTT-SSEEEEEETTTCEEEEEEE
T ss_pred CCCCEEEEEEEcCCCCcccccceeecccccceec------------CCCCCCeEEEEcCC-CCEEEEEcCCCCeEEEEEe
Confidence 6689999999876431000000000000001100 01234678999995 67666666 7899999998
Q ss_pred CCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCC--CcEEEEECC--CCCccee-eeec
Q 004468 246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG--EHVYLMDVN--HAGGRAM-RYTV 320 (751)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d--~~I~lwdl~--~~~~~~~-~~~~ 320 (751)
.+++... +... ... ..+.. .+..++|+|||++|+++..+ +.|.+|++. ++..... ....
T Consensus 241 ~~g~~~~-----------~~~~---~~~-~~~~~-~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~ 304 (361)
T 3scy_A 241 ADGMLDE-----------IQTV---AAD-TVNAQ-GSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT 304 (361)
T ss_dssp ETTEEEE-----------EEEE---ESC-SSCCC-CEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC
T ss_pred cCCceEE-----------eEEE---ecC-CCCCC-CcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC
Confidence 7542110 0000 000 00111 36899999999999776654 899999996 3332222 2222
Q ss_pred CCCceeEEeCCCCCCcccC
Q 004468 321 GDASKIMSFTPTLNGLELQ 339 (751)
Q Consensus 321 ~~~~~~~~~sp~~~~~~~~ 339 (751)
+..+..++|+|+.+.+...
T Consensus 305 g~~~~~~~~spdg~~l~~~ 323 (361)
T 3scy_A 305 GIHPRNFIITPNGKYLLVA 323 (361)
T ss_dssp SSCCCEEEECTTSCEEEEE
T ss_pred CCCCceEEECCCCCEEEEE
Confidence 5567789999988766544
No 160
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.54 E-value=6.1e-14 Score=152.07 Aligned_cols=211 Identities=10% Similarity=0.034 Sum_probs=126.9
Q ss_pred cccEEeccCCCc-----EEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEE
Q 004468 41 SQERELEGHQGC-----VNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVS 112 (751)
Q Consensus 41 ~~~~~L~gH~~~-----V~~l~~s~dg~~LaSgs~D---g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~s 112 (751)
+.+..|..+... +..++|+|||++||..+.. ..|.+||+.+++..... .++......+.|+|+ |+.|+.
T Consensus 21 ~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~-~~~~~~~~~~~~spd--g~~l~~ 97 (396)
T 3c5m_A 21 VKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT-EGKGDNTFGGFISTD--ERAFFY 97 (396)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECC-CSSCBCTTTCEECTT--SSEEEE
T ss_pred cceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEee-cCCCCccccceECCC--CCEEEE
Confidence 344555555433 7788999999998877553 46888899887654433 333333445889999 899999
Q ss_pred EECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeE-------------------EEEecCCCCEEEEE-----eC
Q 004468 113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKK-------------------LAVEVGNPHVVWSA-----SE 168 (751)
Q Consensus 113 gs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-------------------l~~sp~~~~~l~s~-----s~ 168 (751)
++.++.|++||+..+. .......+...... +.|+| ++..++.+ ..
T Consensus 98 ~~~~~~l~~~d~~~~~----------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~ 166 (396)
T 3c5m_A 98 VKNELNLMKVDLETLE----------EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNP 166 (396)
T ss_dssp EETTTEEEEEETTTCC----------EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCC
T ss_pred EEcCCcEEEEECCCCC----------cEEEEecccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCC
Confidence 9999999999998642 22233323332111 23444 22332222 34
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC------CeEEE
Q 004468 169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD------AFARL 242 (751)
Q Consensus 169 Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D------~~Iri 242 (751)
+..|.+||+.+++. ..+. .+...+..+.|+|+++..|+..+.+ ..|.+
T Consensus 167 ~~~l~~~d~~~g~~-----------------------~~~~---~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~ 220 (396)
T 3c5m_A 167 TCRLIKVDIETGEL-----------------------EVIH---QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWL 220 (396)
T ss_dssp CEEEEEEETTTCCE-----------------------EEEE---EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEE
T ss_pred cceEEEEECCCCcE-----------------------Eeec---cCCcccccceECCCCCCEEEEEecCCCCCCCceEEE
Confidence 55677777765431 1111 1234578899999445656555543 36888
Q ss_pred EeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCC
Q 004468 243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-----EHVYLMDVNHA 311 (751)
Q Consensus 243 wD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d-----~~I~lwdl~~~ 311 (751)
||+...+... ... ......+..++|+|||++|+..+.+ +.|++||+.++
T Consensus 221 ~d~~~~~~~~--------------l~~------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 221 VNEDGSNVRK--------------IKE------HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp EETTSCCCEE--------------SSC------CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred EECCCCceeE--------------eec------cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence 8876432110 000 0011237889999999988777543 34888887663
No 161
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.51 E-value=1.3e-12 Score=140.86 Aligned_cols=266 Identities=9% Similarity=0.042 Sum_probs=166.8
Q ss_pred ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeccc-----
Q 004468 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETG----- 91 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs----------~Dg~I~IWd~~~~~~~~~l~~~----- 91 (751)
+..+.+++ ..+.+++.++..+..+ .++|+|||++|.+++ .+++|.+||..+++.+..+...
T Consensus 30 d~~v~v~D--~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~ 105 (361)
T 2oiz_A 30 ESRVHVYD--YTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQ 105 (361)
T ss_dssp GCEEEEEE--TTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCC
T ss_pred cCeEEEEE--CCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccc
Confidence 34555554 3455667778777665 899999999999886 3678999999998888877322
Q ss_pred CCcceEEEEEecCCCCcEEEEEEC--CCcEEEEECCCCCCCCCCCCCCCCcee-ecccCCceeEEEEecCCCCEEEEEeC
Q 004468 92 HSANVFCTKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSASE 168 (751)
Q Consensus 92 h~~~V~~v~fsp~s~~~~l~sgs~--Dg~V~vwd~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~l~~sp~~~~~l~s~s~ 168 (751)
+......++|+|+ |++|+++.. +++|.+||+.+. +.+.. +.. .. ...+.+.|+++..+++.+.
T Consensus 106 ~g~~p~~i~~spd--g~~l~v~n~~~~~~v~v~d~~~~----------~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~ 171 (361)
T 2oiz_A 106 GLNYDGLFRQTTD--GKFIVLQNASPATSIGIVDVAKG----------DYVEDVTAA-AG-CWSVIPQPNRPRSFMTICG 171 (361)
T ss_dssp BCCCGGGEEECTT--SSEEEEEEESSSEEEEEEETTTT----------EEEEEEGGG-TT-EEEEEECTTSSSEEEEEET
T ss_pred cCCCcceEEECCC--CCEEEEECCCCCCeEEEEECCCC----------cEEEEEecC-CC-cceeEEcCCCCeeEEEECC
Confidence 2345778999999 888888763 689999999864 23444 332 11 2235677866678888999
Q ss_pred CCcEEEEecCC-CCCC------CCCCCCC--------Cc----------cceEEEecccCceecccC---CC-------C
Q 004468 169 DGTLRQHDFRQ-GSSC------PPAGSSH--------QE----------CRNILLDLRCGAKRSLAD---PP-------K 213 (751)
Q Consensus 169 Dg~I~iwDlr~-~~~~------~~~~~~~--------~~----------~~~~l~~~~~~~~~~~~~---~~-------~ 213 (751)
||.+.+|++.. ++.. ....... .. ....++++..+....+.. .. .
T Consensus 172 dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 251 (361)
T 2oiz_A 172 DGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNW 251 (361)
T ss_dssp TSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTC
T ss_pred CCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccc
Confidence 99999998865 2211 0000000 00 011222222111100000 00 0
Q ss_pred CccceEEEEEeCCCCcEEEEEe----------CCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceE
Q 004468 214 QTLSLKSCDISSTRPHLLLVGG----------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (751)
Q Consensus 214 ~~~~v~~i~~sp~~~~~l~sgs----------~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt 283 (751)
.......++|+|++.+++++.. ..+.|.+||+.+.+.+..+. .+. +.
T Consensus 252 ~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~--------------------~~~---p~ 308 (361)
T 2oiz_A 252 VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP--------------------GRD---AL 308 (361)
T ss_dssp EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE--------------------CTT---CC
T ss_pred ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe--------------------cCC---ee
Confidence 0001112689996444444433 13589999998876443321 111 67
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCC--CcceeeeecCCCceeEEeCCCCC
Q 004468 284 HVTFSPNGEEVLLSYSGEHVYLMDVNHA--GGRAMRYTVGDASKIMSFTPTLN 334 (751)
Q Consensus 284 ~v~fspdg~~Ll~~s~d~~I~lwdl~~~--~~~~~~~~~~~~~~~~~~sp~~~ 334 (751)
+++|+|||++|++++. +.|.+||..++ +........+..+..++++|+..
T Consensus 309 ~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 309 SMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 8999999999998887 99999999997 43333335677788899998753
No 162
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.48 E-value=1.7e-12 Score=151.51 Aligned_cols=207 Identities=10% Similarity=-0.001 Sum_probs=137.4
Q ss_pred EeccCCCcEEEEEECCCCCEEEEE--eCCCcEEEEeCCCCeEEEEecccCCcceE---------EEEEe--cCCCCcE-E
Q 004468 45 ELEGHQGCVNAISWNSKGSLLISG--SDDTHINVWSYSSRKLLHSIETGHSANVF---------CTKFV--PETSDEL-V 110 (751)
Q Consensus 45 ~L~gH~~~V~~l~~s~dg~~LaSg--s~Dg~I~IWd~~~~~~~~~l~~~h~~~V~---------~v~fs--p~s~~~~-l 110 (751)
.+.+|...|..++|++++-++++. +.++...||....+.....+ ..|...|. ...|+ |+ |+. |
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~SPD--g~~~l 94 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESA-LPAPWNVRNRVFEYSGFPWAGVPRPA--GGPLL 94 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEES-SCTTCCBCCCGGGTCCCCEEEECCSS--SSCEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCccee-CCCCccccccccccCCccceeeeecC--CCeEE
Confidence 467899999999999887788887 66889999996545555566 66776766 67676 88 676 6
Q ss_pred EEEEC-CCcEEEEECC--C-CCCCCCCCCCCCCceeecc-----cCCceeEEEEecCCCCEEEEEeCC----------Cc
Q 004468 111 VSGAG-DAEVRLFNLS--R-FSGRGLDDNAITPSALYQC-----HTRRVKKLAVEVGNPHVVWSASED----------GT 171 (751)
Q Consensus 111 ~sgs~-Dg~V~vwd~~--~-~~~~~~~~~~~~~~~~~~~-----h~~~V~~l~~sp~~~~~l~s~s~D----------g~ 171 (751)
+.++. +..|.+|++. . +. ...+.. |...+..++|+| +++.|++++.| ..
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~-----------~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~ 162 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAV-----------PRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRF 162 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCC-----------CEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEE
T ss_pred EEEECCCCeEEEEcCCCCCCCC-----------CEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeE
Confidence 65543 4556666654 1 11 233333 677889999999 66788888776 58
Q ss_pred EEEEecCC------CCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC--------
Q 004468 172 LRQHDFRQ------GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-------- 237 (751)
Q Consensus 172 I~iwDlr~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D-------- 237 (751)
|++||+.+ +... .+. ..+...+..++|+|+ +++|+.++.+
T Consensus 163 i~~~~~~~~~~~~~~~~~-----------------------~l~--~~~~~~~~~~~~SpD-G~~la~~~~~~~~~~~~~ 216 (662)
T 3azo_A 163 LAAVPLDGSAAADRSAVR-----------------------ELS--DDAHRFVTGPRLSPD-GRQAVWLAWDHPRMPWEG 216 (662)
T ss_dssp EEEEETTSTTTTCGGGSE-----------------------ESS--CSCSSEECCCEECTT-SSEEEEEEECTTCCTTTC
T ss_pred EEEEECCCCccccCCcee-----------------------EEE--ecCCCcccCceECCC-CCEEEEEECCCCCCCCCC
Confidence 99999876 3210 011 012245677899995 7888877755
Q ss_pred CeEEEEeCC-CCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCC--cEEEEECCC
Q 004468 238 AFARLYDRR-MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE--HVYLMDVNH 310 (751)
Q Consensus 238 ~~IriwD~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~--~I~lwdl~~ 310 (751)
..|++||+. ++... . ...+. .++ ...+..++|+|||++++++..++ .|++||+.+
T Consensus 217 ~~i~~~d~~~~g~~~-~----------~~~l~------~~~-~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~ 274 (662)
T 3azo_A 217 TELKTARVTEDGRFA-D----------TRTLL------GGP-EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT 274 (662)
T ss_dssp EEEEEEEECTTSCEE-E----------EEEEE------EET-TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTT
T ss_pred cEEEEEEECCCCccc-c----------cEEeC------CCC-CceEcceEECCCCeEEEEECCCCCeEEEEEECCC
Confidence 379999987 34100 0 00110 011 12488999999999777777777 566666544
No 163
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.47 E-value=4.6e-12 Score=134.51 Aligned_cols=238 Identities=14% Similarity=0.085 Sum_probs=162.2
Q ss_pred CCcEEEEEECCCCCEEEEEeCC------------------------CcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004468 50 QGCVNAISWNSKGSLLISGSDD------------------------THINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (751)
Q Consensus 50 ~~~V~~l~~s~dg~~LaSgs~D------------------------g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s 105 (751)
-+.|.+|+++++|+++++.+.+ ++|.+||..+++.+..+..++-.....+++.|+
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~- 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD- 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT-
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC-
Confidence 4679999999999999999887 479999999898887774466678999999998
Q ss_pred CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceee---------cccCCceeEEEEecCCCCEEEEEe-CCCcEEEE
Q 004468 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY---------QCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQH 175 (751)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~---------~~h~~~V~~l~~sp~~~~~l~s~s-~Dg~I~iw 175 (751)
|+++++...++.|++||..... ..+..+ ..+-..+..|+++|+++.++++.+ .++.|++|
T Consensus 102 -g~l~v~d~~~~~v~~~~~~g~~---------~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~ 171 (329)
T 3fvz_A 102 -GNYWVTDVALHQVFKLDPHSKE---------GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQF 171 (329)
T ss_dssp -SCEEEEETTTTEEEEECTTCSS---------CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEE
T ss_pred -CCEEEEECCCCEEEEEeCCCCe---------EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEE
Confidence 7899998889999999986421 123333 345557899999996778888887 69999999
Q ss_pred ecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccC
Q 004468 176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ 255 (751)
Q Consensus 176 Dlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~ 255 (751)
|. .+... ..+-....+. ...+.+......++++|+++.++++...++.|++||..+++.+..+.
T Consensus 172 ~~-~g~~~-----------~~~~~~g~~~----~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~ 235 (329)
T 3fvz_A 172 SP-SGKFV-----------TQWGEESSGS----SPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK 235 (329)
T ss_dssp CT-TSCEE-----------EEECEECCSS----SCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred cC-CCCEE-----------EEeccCCCCC----CCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe
Confidence 94 33211 0000000000 00012334578999999657888888899999999998665433221
Q ss_pred CCCCCCCccccccccccccCCccccceEEEEEcC------CCCEEEEEeCCCcEEEEECCCCCcceeee---ecCCCcee
Q 004468 256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP------NGEEVLLSYSGEHVYLMDVNHAGGRAMRY---TVGDASKI 326 (751)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fsp------dg~~Ll~~s~d~~I~lwdl~~~~~~~~~~---~~~~~~~~ 326 (751)
. .++ ...+..++|+| +|+.+++...+..|++||+.+++.....- .....+..
T Consensus 236 ~------------------~~~-~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ 296 (329)
T 3fvz_A 236 H------------------ASF-GRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHD 296 (329)
T ss_dssp C------------------TTT-TTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEE
T ss_pred c------------------ccc-CCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeE
Confidence 0 011 11477899999 33333333345699999998865433321 22334667
Q ss_pred EEeCCCC
Q 004468 327 MSFTPTL 333 (751)
Q Consensus 327 ~~~sp~~ 333 (751)
++++|+.
T Consensus 297 ia~~~dG 303 (329)
T 3fvz_A 297 IVASEDG 303 (329)
T ss_dssp EEECTTS
T ss_pred EEECCCC
Confidence 7787765
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.47 E-value=1.3e-12 Score=140.83 Aligned_cols=246 Identities=9% Similarity=0.079 Sum_probs=149.6
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC-CCeEEEEecccCCcceEEEEEecCCCCcE--EEEEE-----------
Q 004468 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYS-SRKLLHSIETGHSANVFCTKFVPETSDEL--VVSGA----------- 114 (751)
Q Consensus 49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~-~~~~~~~l~~~h~~~V~~v~fsp~s~~~~--l~sgs----------- 114 (751)
+...+..++|+|+|++|++++.+ .|.+|++. +++..........+.+.+++|+|+ |++ ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTN--TRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSC--CEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCC--CCEEEEEEecCCcceecccee
Confidence 44568899999999999999988 99999987 776654331111133567899999 773 55553
Q ss_pred --CCCcEEEEECCCCCCCCCCCCCCCCceeec----ccCCceeEEEEecCCCCEEEEEe-CCCcEEEEecC-CCCCCCCC
Q 004468 115 --GDAEVRLFNLSRFSGRGLDDNAITPSALYQ----CHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFR-QGSSCPPA 186 (751)
Q Consensus 115 --~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~----~h~~~V~~l~~sp~~~~~l~s~s-~Dg~I~iwDlr-~~~~~~~~ 186 (751)
.++++.+|++... + +....+. .+...+.+++|+| ++++++++. .++.|++||+. +++..
T Consensus 115 ~~~~g~v~v~~~~~~-g--------~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~--- 181 (365)
T 1jof_A 115 YKFAGYGNVFSVSET-G--------KLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVE--- 181 (365)
T ss_dssp SSSCCEEEEEEECTT-C--------CEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEE---
T ss_pred ecCCceEEEEccCCC-C--------cCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEE---
Confidence 6899999999741 1 1122222 2556799999999 556555554 47899999997 44310
Q ss_pred CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe-CCCeEEEEeCCC--CCCccccCCCCCCCCc
Q 004468 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRM--LPPLTSCQKRMSPPPC 263 (751)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs-~D~~IriwD~~~--~~~~~~~~~~~~~~~~ 263 (751)
.+.. +. .+.+...+..++|+|+ ++++++++ .++.|.+|++.. ++...... .
T Consensus 182 ---------~~~~--------~~-~~~~g~~p~~~~~spd-g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~-------~ 235 (365)
T 1jof_A 182 ---------LVGS--------VD-APDPGDHPRWVAMHPT-GNYLYALMEAGNRICEYVIDPATHMPVYTHH-------S 235 (365)
T ss_dssp ---------EEEE--------EE-CSSTTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEE-------E
T ss_pred ---------Eeee--------Ee-cCCCCCCCCEeEECCC-CCEEEEEECCCCeEEEEEEeCCCCcEEEccc-------e
Confidence 0100 00 0011345788999995 67777666 478999998753 32110000 0
Q ss_pred cccccccccccCCccc-----cceEEEE-EcCCCCEEEEEeCC-C-----cEEEEECC-CCCccee--eee-cCCCceeE
Q 004468 264 VNYFCPMHLSEHGRSS-----LHLTHVT-FSPNGEEVLLSYSG-E-----HVYLMDVN-HAGGRAM--RYT-VGDASKIM 327 (751)
Q Consensus 264 ~~~~~~~~~~~~g~~~-----~~vt~v~-fspdg~~Ll~~s~d-~-----~I~lwdl~-~~~~~~~--~~~-~~~~~~~~ 327 (751)
+. ..+... .++.. ..+..++ |+|||++|+++..+ + .|.+|++. ++..... ... ....+..+
T Consensus 236 ~~-~~~~~~--~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~ 312 (365)
T 1jof_A 236 FP-LIPPGI--PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSN 312 (365)
T ss_dssp EE-SSCTTC--CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCC
T ss_pred EE-cCCCCc--CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccc
Confidence 00 000000 11110 1378999 99999998877653 3 89999997 4332221 121 23446677
Q ss_pred EeCC---CCCCcccC
Q 004468 328 SFTP---TLNGLELQ 339 (751)
Q Consensus 328 ~~sp---~~~~~~~~ 339 (751)
+|+| +.+.+...
T Consensus 313 a~sp~~~dg~~l~v~ 327 (365)
T 1jof_A 313 AVSPCPWSDEWMAIT 327 (365)
T ss_dssp CEEECTTCTTEEEEE
T ss_pred eecCCCcCCCEEEEE
Confidence 8888 55555443
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.47 E-value=8.2e-13 Score=156.40 Aligned_cols=114 Identities=9% Similarity=0.038 Sum_probs=89.9
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcc-----eEEEEEecCCCCcEEEEEECC---------
Q 004468 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN-----VFCTKFVPETSDELVVSGAGD--------- 116 (751)
Q Consensus 51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~-----V~~v~fsp~s~~~~l~sgs~D--------- 116 (751)
.....+.|+|||++|+++ |++|++||+.+++....+ .+|... ..++.|+|+ |++|+.++.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Spd--g~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFL-ENSTFDEFGHSINDYSISPD--GQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEE-CTTTTTTCCSCCCEEEECTT--SSEEEEEEEEEECSSSCEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEE-echhhhhhcccccceEECCC--CCEEEEEECCeeeEEEccc
Confidence 345589999999999997 899999999999887666 666543 234788999 8999988876
Q ss_pred CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004468 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (751)
Q Consensus 117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~ 182 (751)
+.+.+||+.++. ...+..|...+...+||| +++.|+.+ .|+.|++||+.++..
T Consensus 92 ~~~~~~d~~~~~-----------~~~l~~~~~~~~~~~~SP-dG~~la~~-~~~~i~~~~~~~~~~ 144 (740)
T 4a5s_A 92 ASYDIYDLNKRQ-----------LITEERIPNNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLPS 144 (740)
T ss_dssp EEEEEEETTTTE-----------ECCSSCCCTTEEEEEECS-STTCEEEE-ETTEEEEESSTTSCC
T ss_pred eEEEEEECCCCc-----------EEEcccCCCcceeeEECC-CCCEEEEE-ECCeEEEEECCCCce
Confidence 556799999642 334566788899999999 56777676 468999999987763
No 166
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.43 E-value=6e-13 Score=156.93 Aligned_cols=259 Identities=10% Similarity=0.021 Sum_probs=146.3
Q ss_pred ccccccchhhhccccccEEeccCCC---cEEEEEECCCCCEEEEEeC---------CCcEEEEeCCCCeEEEEecccCCc
Q 004468 27 NHSLQMHSSLVRRLSQERELEGHQG---CVNAISWNSKGSLLISGSD---------DTHINVWSYSSRKLLHSIETGHSA 94 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~gH~~---~V~~l~~s~dg~~LaSgs~---------Dg~I~IWd~~~~~~~~~l~~~h~~ 94 (751)
+..+.+|+. ...+....+.+|.. .|.+++|||||++||+++. |+.|+|||+.+++.+... ....
T Consensus 35 d~~i~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~--~l~~ 110 (719)
T 1z68_A 35 DNNIVLYNI--ETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN--ELPR 110 (719)
T ss_dssp TSCEEEEES--SSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS--CCCS
T ss_pred CCCEEEEEc--CCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce--ecCc
Confidence 344555542 33445555665544 4899999999999999887 789999999988763211 1125
Q ss_pred ceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCce---------eEEEEecCCCCEEEE
Q 004468 95 NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV---------KKLAVEVGNPHVVWS 165 (751)
Q Consensus 95 ~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V---------~~l~~sp~~~~~l~s 165 (751)
.+.+++|+|+ |+.|+.++ |+.|++||+..+....+.. .......+.+|...| .+++|+| +++.|++
T Consensus 111 ~~~~~~~SPD--G~~la~~~-~~~i~~~~~~~g~~~~l~~-~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~ 185 (719)
T 1z68_A 111 PIQYLCWSPV--GSKLAYVY-QNNIYLKQRPGDPPFQITF-NGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAY 185 (719)
T ss_dssp SBCCEEECSS--TTCEEEEE-TTEEEEESSTTSCCEECCC-CCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEE
T ss_pred ccccceECCC--CCEEEEEE-CCeEEEEeCCCCCcEEEec-CCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEE
Confidence 6899999999 88898886 7899999998643211100 000111223333332 5899999 6688888
Q ss_pred EeCC-CcEEEEecCCCCCC----------CCCCCCCCccceEEEecccCcee---cccC---CCCCccceEEEEEeCCCC
Q 004468 166 ASED-GTLRQHDFRQGSSC----------PPAGSSHQECRNILLDLRCGAKR---SLAD---PPKQTLSLKSCDISSTRP 228 (751)
Q Consensus 166 ~s~D-g~I~iwDlr~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~---~~~~---~~~~~~~v~~i~~sp~~~ 228 (751)
++.| +.+.+|.+...... +..+.........++++..+... .+.. ...+...+.+++|+|+ +
T Consensus 186 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD-~ 264 (719)
T 1z68_A 186 AEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTD-E 264 (719)
T ss_dssp EEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSS-S
T ss_pred EEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCC-C
Confidence 7765 33333322110000 00000011112234444433211 1110 1135667899999996 6
Q ss_pred cEEEEEeCC----CeEEEEe----CCCCCCccccCCCCCCCCccccccccccccCCccccceE-----EEEEcCCCCEEE
Q 004468 229 HLLLVGGSD----AFARLYD----RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT-----HVTFSPNGEEVL 295 (751)
Q Consensus 229 ~~l~sgs~D----~~IriwD----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt-----~v~fspdg~~Ll 295 (751)
+++++.... ..|.+|| ..+++..... . .. ..++.. .+. .+.|+|||+.|+
T Consensus 265 ~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~-------------~--~~-~~~~~~-~~~~~~~~~~~~spdg~~l~ 327 (719)
T 1z68_A 265 RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQ-------------E--HI-EESRTG-WAGGFFVSTPVFSYDAISYY 327 (719)
T ss_dssp EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGG-------------E--EE-EECSSS-CSSSSSCCCCEECTTSSCEE
T ss_pred eEEEEEeccccCeEEEEEEcccCCCCCCceEEEE-------------e--cc-cccCCc-eEccccCCccEECCCCCeEE
Confidence 777764432 2488899 6654322111 0 00 001111 233 678999999765
Q ss_pred E--EeCCC--cEEEEECCCCC
Q 004468 296 L--SYSGE--HVYLMDVNHAG 312 (751)
Q Consensus 296 ~--~s~d~--~I~lwdl~~~~ 312 (751)
. +..++ .|++||+.++.
T Consensus 328 ~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 328 KIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp EEEECTTSCEEEEEESSCSTT
T ss_pred EEEEccCCceEEEEEECCCCc
Confidence 4 33444 68888887754
No 167
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.43 E-value=8.6e-13 Score=151.61 Aligned_cols=219 Identities=9% Similarity=0.011 Sum_probs=139.3
Q ss_pred ccccccchhhhccccccEEeccCC-CcEEEEEECCCCCEEEEEeC---CCcEEEEeCCC---CeEEEEecccCCcceEEE
Q 004468 27 NHSLQMHSSLVRRLSQERELEGHQ-GCVNAISWNSKGSLLISGSD---DTHINVWSYSS---RKLLHSIETGHSANVFCT 99 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~gH~-~~V~~l~~s~dg~~LaSgs~---Dg~I~IWd~~~---~~~~~~l~~~h~~~V~~v 99 (751)
+..+++|. +.. ...+.|..|. ..|..+.|+|| +++++++. +....||.+.. +... .+ ..+ ..+...
T Consensus 43 ~g~~~lw~--~~~-g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l-~~~-~~~~~~ 115 (582)
T 3o4h_A 43 EGSVNAYL--YDG-GETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RL-EAV-KPMRIL 115 (582)
T ss_dssp TTEEEEEE--EET-TEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-EC-TTS-CSBEEE
T ss_pred CCceeEEE--EcC-CCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cc-cCC-CCceee
Confidence 45566666 233 3345555665 68999999999 88888775 55566665432 2222 34 222 234467
Q ss_pred EEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC----CcEEEE
Q 004468 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED----GTLRQH 175 (751)
Q Consensus 100 ~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D----g~I~iw 175 (751)
+|+|+.++..+++++.| .+.|||+.++ + ...+..+.. .+++|+| +++.|++++.| +.|++|
T Consensus 116 ~~s~dg~~~~~~s~~~~-~~~l~d~~~g----------~-~~~l~~~~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~ 180 (582)
T 3o4h_A 116 SGVDTGEAVVFTGATED-RVALYALDGG----------G-LRELARLPG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTS 180 (582)
T ss_dssp EEEECSSCEEEEEECSS-CEEEEEEETT----------E-EEEEEEESS--CEEEEEE-ETTEEEEEEEEETTEEEEEEE
T ss_pred eeCCCCCeEEEEecCCC-CceEEEccCC----------c-EEEeecCCC--ceEEECC-CCCEEEEEEEcCCCCeEEEEE
Confidence 88988422345555554 4559999864 2 222323333 7899999 67888888877 789999
Q ss_pred ecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC--eEEEEeCCCCCCccc
Q 004468 176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA--FARLYDRRMLPPLTS 253 (751)
Q Consensus 176 Dlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~--~IriwD~~~~~~~~~ 253 (751)
|+.+++.. .+ ..+...+..++|+|+ +++|+++..++ .|++||+.+.+.. .
T Consensus 181 d~~~g~~~------------~l--------------~~~~~~~~~~~~SpD-G~~l~~~~~~~~~~i~~~d~~~~~~~-~ 232 (582)
T 3o4h_A 181 NLSSGGLR------------VF--------------DSGEGSFSSASISPG-MKVTAGLETAREARLVTVDPRDGSVE-D 232 (582)
T ss_dssp ETTTCCCE------------EE--------------CCSSCEEEEEEECTT-SCEEEEEECSSCEEEEEECTTTCCEE-E
T ss_pred cCCCCCce------------Ee--------------ecCCCccccceECCC-CCEEEEccCCCeeEEEEEcCCCCcEE-E
Confidence 99876521 11 124456789999994 78888888888 8999999876532 1
Q ss_pred cCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004468 254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (751)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl 308 (751)
+... ...+... .........|+|||..+++++.++.++||++
T Consensus 233 ~~~~---~~~~~~~----------~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 233 LELP---SKDFSSY----------RPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp CCCS---CSHHHHH----------CCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred ccCC---CcChhhh----------hhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 1000 0000000 0001234449999988888889999999999
No 168
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.42 E-value=1.1e-11 Score=134.12 Aligned_cols=248 Identities=9% Similarity=-0.019 Sum_probs=152.8
Q ss_pred hccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEE--ecCCCCcEEEEE-
Q 004468 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF--VPETSDELVVSG- 113 (751)
Q Consensus 37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~f--sp~s~~~~l~sg- 113 (751)
....+......+|...+..+.|+|||+.|+.++.++.|.+||+.+++....+ ..+...+....| +|+ +.+++..
T Consensus 67 ~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~d--g~~l~~~~ 143 (388)
T 3pe7_A 67 LNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVY-QVPAEWVGYGTWVANSD--CTKLVGIE 143 (388)
T ss_dssp TTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTT--SSEEEEEE
T ss_pred CCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeee-echhhcccccceeECCC--CCeecccc
Confidence 3444555556667666667889999999999999999999999988776555 455555555554 676 7777643
Q ss_pred ---------------------ECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC---
Q 004468 114 ---------------------AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED--- 169 (751)
Q Consensus 114 ---------------------s~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D--- 169 (751)
..+..|.+||+.++. ...+..+...+..++|+|.++..|+.++.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-----------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~ 212 (388)
T 3pe7_A 144 IRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE-----------STVILQENQWLGHPIYRPYDDSTVAFCHEGPHD 212 (388)
T ss_dssp EEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC-----------EEEEEEESSCEEEEEEETTEEEEEEEEECSCTT
T ss_pred ccCcccccccccchhhhhhccCCcceEEEEECCCCc-----------eEEeecCCccccccEECCCCCCEEEEEEecCCC
Confidence 244679999998642 345556777899999999334556555543
Q ss_pred ---CcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEE-EEeCCC----eEE
Q 004468 170 ---GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL-VGGSDA----FAR 241 (751)
Q Consensus 170 ---g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~-sgs~D~----~Ir 241 (751)
..|.++|+...... .+.. ......+....|+|+ ++.|+ ++..++ .|+
T Consensus 213 ~~~~~l~~~d~~~~~~~-----------------------~l~~-~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~l~ 267 (388)
T 3pe7_A 213 LVDARMWLINEDGTNMR-----------------------KVKT-HAEGESCTHEFWVPD-GSALVYVSYLKGSPDRFIY 267 (388)
T ss_dssp TSSCSEEEEETTSCCCE-----------------------ESCC-CCTTEEEEEEEECTT-SSCEEEEEEETTCCCEEEE
T ss_pred CCcceEEEEeCCCCceE-----------------------Eeee-CCCCcccccceECCC-CCEEEEEecCCCCCcceEE
Confidence 36777776554311 0111 001135678899996 55454 343322 399
Q ss_pred EEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEE---------eCCCcEEEEECCCCC
Q 004468 242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS---------YSGEHVYLMDVNHAG 312 (751)
Q Consensus 242 iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~---------s~d~~I~lwdl~~~~ 312 (751)
+||+.+++... +..+ +.. .+.......+.|+|||+.|+.. ..+..|++||+.++.
T Consensus 268 ~~d~~~g~~~~-----------l~~~-~~~----~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 268 SADPETLENRQ-----------LTSM-PAC----SHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp EECTTTCCEEE-----------EEEE-CCE----EEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred EEecCCCceEE-----------EEcC-CCc----eeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence 99998765211 0000 000 0000001123799999988864 446799999999854
Q ss_pred cceeeeecCC-----------CceeEEeCCCCCCcccCC
Q 004468 313 GRAMRYTVGD-----------ASKIMSFTPTLNGLELQP 340 (751)
Q Consensus 313 ~~~~~~~~~~-----------~~~~~~~sp~~~~~~~~~ 340 (751)
. .....+.. ....++|+|+.+.+.+..
T Consensus 332 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s 369 (388)
T 3pe7_A 332 Q-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTS 369 (388)
T ss_dssp E-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred e-EEeccccCcccccccccccCCCCccCCCCCCEEEEEe
Confidence 3 33333333 356678899887776653
No 169
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.39 E-value=3.9e-12 Score=150.57 Aligned_cols=265 Identities=11% Similarity=0.090 Sum_probs=159.1
Q ss_pred ccccccchhhhccccccEEeccCCCc-----EEEEEECCCCCEEEEEeCC---------CcEEEEeCCCCeEEEEecccC
Q 004468 27 NHSLQMHSSLVRRLSQERELEGHQGC-----VNAISWNSKGSLLISGSDD---------THINVWSYSSRKLLHSIETGH 92 (751)
Q Consensus 27 ~~~l~~~~~~i~~~~~~~~L~gH~~~-----V~~l~~s~dg~~LaSgs~D---------g~I~IWd~~~~~~~~~l~~~h 92 (751)
+..+.+|+ +.+.+....+.+|... .+.+.|||||++||.++.+ +.+.|||+.+++.. .+ ..|
T Consensus 35 ~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l-~~~ 110 (740)
T 4a5s_A 35 ENNILVFN--AEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TE-ERI 110 (740)
T ss_dssp TTEEEEEE--TTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CS-SCC
T ss_pred CCcEEEEE--CCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-Ec-ccC
Confidence 34555555 3344456667777643 3458899999999999887 55679999988764 34 678
Q ss_pred CcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCc---------eeEEEEecCCCCEE
Q 004468 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR---------VKKLAVEVGNPHVV 163 (751)
Q Consensus 93 ~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~---------V~~l~~sp~~~~~l 163 (751)
.+.+..++|||+ |+.||.++ |+.|++|++..+....+.. .......+.++.+. ...+.||| +++.|
T Consensus 111 ~~~~~~~~~SPd--G~~la~~~-~~~i~~~~~~~~~~~~lt~-~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~l 185 (740)
T 4a5s_A 111 PNNTQWVTWSPV--GHKLAYVW-NNDIYVKIEPNLPSYRITW-TGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFL 185 (740)
T ss_dssp CTTEEEEEECSS--TTCEEEEE-TTEEEEESSTTSCCEECCS-CCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEE
T ss_pred CCcceeeEECCC--CCEEEEEE-CCeEEEEECCCCceEEEcC-CCCccceecCcccccccchhcCCCcceEECC-CCCEE
Confidence 889999999999 88888874 7899999998643221100 00111123333322 24589999 66777
Q ss_pred EEEeCCCc-EEEEecCCCCCC------------CCCCCCCCccceEEEeccc---C---ceecccCCC---CCccceEEE
Q 004468 164 WSASEDGT-LRQHDFRQGSSC------------PPAGSSHQECRNILLDLRC---G---AKRSLADPP---KQTLSLKSC 221 (751)
Q Consensus 164 ~s~s~Dg~-I~iwDlr~~~~~------------~~~~~~~~~~~~~l~~~~~---~---~~~~~~~~~---~~~~~v~~i 221 (751)
+.++.|.+ +.+|++...... +..+.........++++.. + ....+.... .+...+..+
T Consensus 186 a~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 265 (740)
T 4a5s_A 186 AYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDV 265 (740)
T ss_dssp EEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEE
T ss_pred EEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEE
Confidence 77776554 888876432210 0111111222345677766 5 333332211 266779999
Q ss_pred EEeCCCCcEEEEEe----CCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccc-----eEEEEEcCCCC
Q 004468 222 DISSTRPHLLLVGG----SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH-----LTHVTFSPNGE 292 (751)
Q Consensus 222 ~~sp~~~~~l~sgs----~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----vt~v~fspdg~ 292 (751)
+|+|+ +++++... .+..|++||+.+++.... |..... +...++.. . ...++|+|||+
T Consensus 266 ~wspd-g~~~~~~~~r~~~~~~i~~~d~~tg~~~~~---------~~~~~~---l~~~~~~~-~v~~~~~~~p~fspDG~ 331 (740)
T 4a5s_A 266 TWATQ-ERISLQWLRRIQNYSVMDICDYDESSGRWN---------CLVARQ---HIEMSTTG-WVGRFRPSEPHFTLDGN 331 (740)
T ss_dssp EEEET-TEEEEEEEESSTTEEEEEEEEEETTTTEEE---------ECGGGC---EEEECSSS-CSSSSSCCCCEECTTSS
T ss_pred EEeCC-CeEEEEEeCCCCCEEEEEEEECCCCccccc---------eeEEEE---eeeccCCc-eEccCcCCCceEcCCCC
Confidence 99995 67655543 234799999987651000 000000 00001111 1 23578999999
Q ss_pred EEE-EEeC-C--CcEEEEECCCCCcc
Q 004468 293 EVL-LSYS-G--EHVYLMDVNHAGGR 314 (751)
Q Consensus 293 ~Ll-~~s~-d--~~I~lwdl~~~~~~ 314 (751)
.|+ ..+. + .+|++||+.++...
T Consensus 332 ~l~~~~s~~~G~~~l~~~~~~~~~~~ 357 (740)
T 4a5s_A 332 SFYKIISNEEGYRHICYFQIDKKDCT 357 (740)
T ss_dssp EEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred EEEEEEEcCCCceEEEEEECCCCceE
Confidence 877 5554 3 57999999875433
No 170
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.38 E-value=1e-10 Score=123.73 Aligned_cols=242 Identities=10% Similarity=0.065 Sum_probs=157.2
Q ss_pred cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC----
Q 004468 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---- 116 (751)
Q Consensus 41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D---- 116 (751)
+....+.++...+.+++|+++|++++++..++.|.+||..+++..... ..+...+.+++|+|+ +++++++..+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~d--g~l~v~~~~~~~~~ 111 (333)
T 2dg1_A 35 EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-VSHKANPAAIKIHKD--GRLFVCYLGDFKST 111 (333)
T ss_dssp EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECTT--SCEEEEECTTSSSC
T ss_pred ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe-eCCCCCcceEEECCC--CcEEEEeCCCCCCC
Confidence 455677788888999999999998889999999999999887765544 356788999999999 7888877766
Q ss_pred CcEEEEECCCCCCCCCCCCCCCCceeec--ccCCceeEEEEecCCCCEEEEEeC------CCcEEEEecCCCCCCCCCCC
Q 004468 117 AEVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASE------DGTLRQHDFRQGSSCPPAGS 188 (751)
Q Consensus 117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~l~s~s~------Dg~I~iwDlr~~~~~~~~~~ 188 (751)
+.|.+||..... ....+. .+...+..++++| ++.++++... .+.|..+|..+++.
T Consensus 112 ~~i~~~d~~~~~----------~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~------ 174 (333)
T 2dg1_A 112 GGIFAATENGDN----------LQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTV------ 174 (333)
T ss_dssp CEEEEECTTSCS----------CEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCE------
T ss_pred ceEEEEeCCCCE----------EEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEE------
Confidence 689999987532 111121 2456789999999 5677766553 24555555443321
Q ss_pred CCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCc-EEEEEeCCCeEEEEeCCC-CCCccccCCCCCCCCcccc
Q 004468 189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH-LLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNY 266 (751)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~sgs~D~~IriwD~~~-~~~~~~~~~~~~~~~~~~~ 266 (751)
..+.. ....+..++|+|+ ++ ++++...++.|.+||+.. ...+..+.. ..
T Consensus 175 ------~~~~~--------------~~~~~~~i~~~~d-g~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~--------~~ 225 (333)
T 2dg1_A 175 ------TPIIQ--------------NISVANGIALSTD-EKVLWVTETTANRLHRIALEDDGVTIQPFGA--------TI 225 (333)
T ss_dssp ------EEEEE--------------EESSEEEEEECTT-SSEEEEEEGGGTEEEEEEECTTSSSEEEEEE--------EE
T ss_pred ------EEeec--------------CCCcccceEECCC-CCEEEEEeCCCCeEEEEEecCCCcCcccccc--------eE
Confidence 01110 1124678999995 55 445556688999999864 221111000 00
Q ss_pred ccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCC------CceeEEeCCCCCCccc
Q 004468 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD------ASKIMSFTPTLNGLEL 338 (751)
Q Consensus 267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~------~~~~~~~sp~~~~~~~ 338 (751)
+ ... .++ ..+..++++++|+.+++...++.|++||.+. +.......... .+..++|+|+.+.+.+
T Consensus 226 ~--~~~--~~~--~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g-~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v 296 (333)
T 2dg1_A 226 P--YYF--TGH--EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG-YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLII 296 (333)
T ss_dssp E--EEC--CSS--SEEEEEEEBTTCCEEEEEETTTEEEEECTTS-CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEE
T ss_pred E--Eec--CCC--CCCCceEECCCCCEEEEEcCCCEEEEECCCC-CEEEEEEcCCCccccccCcceEEECCCCCEEEE
Confidence 0 000 111 1378899999999888887889999999853 32222222211 4667888877544433
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.37 E-value=5.9e-11 Score=122.77 Aligned_cols=202 Identities=9% Similarity=0.130 Sum_probs=142.7
Q ss_pred cCCCcEEEEEE-CCCCCEEEEEeC-CCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECC
Q 004468 48 GHQGCVNAISW-NSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (751)
Q Consensus 48 gH~~~V~~l~~-s~dg~~LaSgs~-Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~ 125 (751)
+|...+..+++ .++|+++++... ++.|.+|| .+++.+..+...+...+.++++.|+ ++++++...++.|.+||..
T Consensus 74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~~ 150 (286)
T 1q7f_A 74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNK--GRIIVVECKVMRVIIFDQN 150 (286)
T ss_dssp TCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTT--SCEEEEETTTTEEEEECTT
T ss_pred ccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCC--CCEEEEECCCCEEEEEcCC
Confidence 35568999999 578887777754 88999999 5677777774455677999999998 7888888888999999965
Q ss_pred CCCCCCCCCCCCCCceeec--ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccC
Q 004468 126 RFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (751)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (751)
. +.+..+. .+...+..|+++| +++++++...++.|++||..... +..+.
T Consensus 151 g-----------~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~---------------~~~~~-- 201 (286)
T 1q7f_A 151 G-----------NVLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYEGQY---------------LRQIG-- 201 (286)
T ss_dssp S-----------CEEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETTCCE---------------EEEES--
T ss_pred C-----------CEEEEeCCCCccCCcEEEEECC-CCCEEEEECCCCEEEEEcCCCCE---------------EEEEc--
Confidence 2 2233332 3456789999999 56788888889999999974321 11100
Q ss_pred ceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC-eEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccce
Q 004468 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA-FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (751)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~-~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v 282 (751)
..++...+..++++|+ ++++++...++ .|++||.. ++.+.. +.. + .. ...+
T Consensus 202 -------~~g~~~~p~~i~~d~~-G~l~v~~~~~~~~i~~~~~~-g~~~~~-------------~~~-~----~~-~~~~ 253 (286)
T 1q7f_A 202 -------GEGITNYPIGVGINSN-GEILIADNHNNFNLTIFTQD-GQLISA-------------LES-K----VK-HAQC 253 (286)
T ss_dssp -------CTTTSCSEEEEEECTT-CCEEEEECSSSCEEEEECTT-SCEEEE-------------EEE-S----SC-CSCE
T ss_pred -------cCCccCCCcEEEECCC-CCEEEEeCCCCEEEEEECCC-CCEEEE-------------Ecc-c----CC-CCcc
Confidence 0112245788999995 68888887776 99999954 322211 100 0 01 1137
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 283 THVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 283 t~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
.+++++|+|+.+++ +.++.|++|++..
T Consensus 254 ~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 254 FDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred eeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 89999999986666 5799999999866
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.35 E-value=2e-10 Score=118.78 Aligned_cols=227 Identities=7% Similarity=0.082 Sum_probs=152.9
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc-----cCCcceEEEEEe-cCCCCcEEEEEEC-CCcE
Q 004468 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET-----GHSANVFCTKFV-PETSDELVVSGAG-DAEV 119 (751)
Q Consensus 47 ~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~-----~h~~~V~~v~fs-p~s~~~~l~sgs~-Dg~V 119 (751)
.+|-..+.+|+++++|+++++.+.++.|.+||.. ++.+..+.. +|...+.++++. ++ +.++++... ++.|
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~--g~l~v~~~~~~~~i 102 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNS--GDIIVTERSPTHQI 102 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTT--TEEEEEECGGGCEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCC--CeEEEEcCCCCCEE
Confidence 4566789999999999999999999999999987 666655521 345678999995 55 666666643 8999
Q ss_pred EEEECCCCCCCCCCCCCCCCceeec-ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004468 120 RLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (751)
Q Consensus 120 ~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (751)
++||... +.+..+. .+...+..++++| +++++++...++.|.+||..... ...+
T Consensus 103 ~~~d~~g-----------~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~-------------~~~~ 157 (286)
T 1q7f_A 103 QIYNQYG-----------QFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNGNV-------------LHKF 157 (286)
T ss_dssp EEECTTS-----------CEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTTSCE-------------EEEE
T ss_pred EEECCCC-----------cEEEEecCccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCCCCE-------------EEEe
Confidence 9999542 2233332 3446789999999 56788888888999999964321 0011
Q ss_pred ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcc
Q 004468 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (751)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 278 (751)
. ...+...+..++++|+ ++++++...++.|++||... +.+.. +. ..++.
T Consensus 158 ~-----------~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~g-~~~~~-------------~~-----~~g~~ 206 (286)
T 1q7f_A 158 G-----------CSKHLEFPNGVVVNDK-QEIFISDNRAHCVKVFNYEG-QYLRQ-------------IG-----GEGIT 206 (286)
T ss_dssp E-----------CTTTCSSEEEEEECSS-SEEEEEEGGGTEEEEEETTC-CEEEE-------------ES-----CTTTS
T ss_pred C-----------CCCccCCcEEEEECCC-CCEEEEECCCCEEEEEcCCC-CEEEE-------------Ec-----cCCcc
Confidence 0 0012345789999995 67777778899999999742 21111 10 01111
Q ss_pred ccceEEEEEcCCCCEEEEEeCCC-cEEEEECCCCCcceeeeecCC--CceeEEeCCCCC
Q 004468 279 SLHLTHVTFSPNGEEVLLSYSGE-HVYLMDVNHAGGRAMRYTVGD--ASKIMSFTPTLN 334 (751)
Q Consensus 279 ~~~vt~v~fspdg~~Ll~~s~d~-~I~lwdl~~~~~~~~~~~~~~--~~~~~~~sp~~~ 334 (751)
..+..++++++|+.+++...++ .|++||... ........... .+..++++|+.+
T Consensus 207 -~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~i~~~~~g~ 263 (286)
T 1q7f_A 207 -NYPIGVGINSNGEILIADNHNNFNLTIFTQDG-QLISALESKVKHAQCFDVALMDDGS 263 (286)
T ss_dssp -CSEEEEEECTTCCEEEEECSSSCEEEEECTTS-CEEEEEEESSCCSCEEEEEEETTTE
T ss_pred -CCCcEEEECCCCCEEEEeCCCCEEEEEECCCC-CEEEEEcccCCCCcceeEEECCCCc
Confidence 1478999999999888887776 999999654 32222222222 244677777653
No 173
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.34 E-value=1.2e-11 Score=133.13 Aligned_cols=215 Identities=9% Similarity=0.031 Sum_probs=134.4
Q ss_pred cEEEEEECCCCCE--EEEEe-------------CCCcEEEEeCC-CCeEEEEec---ccCCcceEEEEEecCCCCcEEEE
Q 004468 52 CVNAISWNSKGSL--LISGS-------------DDTHINVWSYS-SRKLLHSIE---TGHSANVFCTKFVPETSDELVVS 112 (751)
Q Consensus 52 ~V~~l~~s~dg~~--LaSgs-------------~Dg~I~IWd~~-~~~~~~~l~---~~h~~~V~~v~fsp~s~~~~l~s 112 (751)
.+.+++|+|+|++ +++++ .++++.+|++. +++....+. ..+...+.+++|+|+ |++|++
T Consensus 84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spd--G~~l~~ 161 (365)
T 1jof_A 84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPT--ETYLYS 161 (365)
T ss_dssp SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTT--SSEEEE
T ss_pred CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCC--CCEEEE
Confidence 3567899999994 55653 68999999997 465544331 135678999999999 787776
Q ss_pred EE-CCCcEEEEECC-CCCCCCCCCCCCCCceeec--ccCCceeEEEEecCCCCEEEEEe-CCCcEEEEecCC--CCCCCC
Q 004468 113 GA-GDAEVRLFNLS-RFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQ--GSSCPP 185 (751)
Q Consensus 113 gs-~Dg~V~vwd~~-~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~l~s~s-~Dg~I~iwDlr~--~~~~~~ 185 (751)
+. .++.|++|++. .+. . ..+..+. .|...+..++|+| +++++++++ .+++|.+|++.. ++...
T Consensus 162 ~~~~~~~v~~~~~~~~g~--~------~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~- 231 (365)
T 1jof_A 162 ADLTANKLWTHRKLASGE--V------ELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVY- 231 (365)
T ss_dssp EETTTTEEEEEEECTTSC--E------EEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEE-
T ss_pred EcCCCCEEEEEEECCCCC--E------EEeeeEecCCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEE-
Confidence 65 47899999997 321 1 1122333 2456789999999 556666655 478999998763 22100
Q ss_pred CCCCCCccceEEEecccCceecccCCCCCcc------ceEEEE-EeCCCCcEEEEEeCC-C-----eEEEEeCC-CCCCc
Q 004468 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTL------SLKSCD-ISSTRPHLLLVGGSD-A-----FARLYDRR-MLPPL 251 (751)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~v~~i~-~sp~~~~~l~sgs~D-~-----~IriwD~~-~~~~~ 251 (751)
....+..+..+ ..++.. .+..++ |+|+ +++|+++..+ . .|.+|++. +++..
T Consensus 232 -------~~~~~~~~~~~-------~~g~~~~~~~~~~~~~i~~~spd-G~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~ 296 (365)
T 1jof_A 232 -------THHSFPLIPPG-------IPDRDPETGKGLYRADVCALTFS-GKYMFASSRANKFELQGYIAGFKLRDCGSIE 296 (365)
T ss_dssp -------EEEEEESSCTT-------CCCBCTTTSSBSEEEEEEEECTT-SSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred -------ccceEEcCCCC-------cCCcccccccccccccEEEECCC-CCEEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence 00000000000 001111 578999 9995 6777666543 2 89999986 33211
Q ss_pred cccCCCCCCCCccccccccccccCCccccceEEEEEcC---CCCEEEEEeC-CCcEEEEECCCC
Q 004468 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP---NGEEVLLSYS-GEHVYLMDVNHA 311 (751)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fsp---dg~~Ll~~s~-d~~I~lwdl~~~ 311 (751)
. +....+. + ...+..++|+| ||++|+++.. ++.|.+|+++..
T Consensus 297 ~-----------~~~~~~~------~-~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 297 K-----------QLFLSPT------P-TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp E-----------EEEEEEC------S-SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred E-----------eeeeeec------C-CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 0 0000000 0 01245688999 8999999887 489999999874
No 174
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.33 E-value=2.9e-10 Score=120.51 Aligned_cols=208 Identities=10% Similarity=0.044 Sum_probs=146.3
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-EEEEec--------ccCCcceEEEEEecCCCCcEEEEEE-CCC
Q 004468 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIE--------TGHSANVFCTKFVPETSDELVVSGA-GDA 117 (751)
Q Consensus 48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~-~~~~l~--------~~h~~~V~~v~fsp~s~~~~l~sgs-~Dg 117 (751)
++-..++.|+++++|+++++...++.|++||..... .+..+. .++-.....|+|.|+. +.++++.+ .++
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~-g~lyv~d~~~~~ 166 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPST-GAVFVSDGYCNS 166 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTT-CCEEEEECSSCC
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCC-CeEEEEeCCCCC
Confidence 455689999999999999999999999999986442 444442 2445578999999932 78888886 699
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeec----------ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCC
Q 004468 118 EVRLFNLSRFSGRGLDDNAITPSALYQ----------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG 187 (751)
Q Consensus 118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~----------~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~ 187 (751)
.|++|+... ..+..+. ++-..+..|+++|+++.++++...++.|++||..+++..
T Consensus 167 ~I~~~~~~g-----------~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~---- 231 (329)
T 3fvz_A 167 RIVQFSPSG-----------KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFV---- 231 (329)
T ss_dssp EEEEECTTS-----------CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE----
T ss_pred eEEEEcCCC-----------CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEE----
Confidence 999999542 2233332 233448899999965889999999999999999865421
Q ss_pred CCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe-------CCCeEEEEeCCCCCCccccCCCCCC
Q 004468 188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-------SDAFARLYDRRMLPPLTSCQKRMSP 260 (751)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs-------~D~~IriwD~~~~~~~~~~~~~~~~ 260 (751)
.. ...+.....+..++|+| +..+++.+ .+..|++||..+++.+..+...
T Consensus 232 ----------~~---------~~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~--- 287 (329)
T 3fvz_A 232 ----------RE---------IKHASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV--- 287 (329)
T ss_dssp ----------EE---------ECCTTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS---
T ss_pred ----------EE---------EeccccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC---
Confidence 10 01112334577888888 33443333 3458999999877644332100
Q ss_pred CCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
.++.. .+..|+++|+|..+++...++.|++|++..
T Consensus 288 --------------~~~~~-~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 288 --------------RKHFD-MPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp --------------SSCCS-SEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred --------------CCccC-CeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 11112 488999999998788888899999999875
No 175
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.30 E-value=2.4e-11 Score=131.54 Aligned_cols=224 Identities=7% Similarity=-0.062 Sum_probs=139.1
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEE-------------------EEEecCCCCcEEEEE
Q 004468 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC-------------------TKFVPETSDELVVSG 113 (751)
Q Consensus 53 V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~-------------------v~fsp~s~~~~l~sg 113 (751)
+..+.|+|||++|+.++.++.|.+||+.+++..... ..+...... +.|+|+ ++.++.+
T Consensus 83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spd--g~~~~~~ 159 (396)
T 3c5m_A 83 TFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIY-TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPL--TSWEKFA 159 (396)
T ss_dssp TTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCC--CSHHHHH
T ss_pred cccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEE-ecccccCCCCCEEEeccCCccccccccccccCCC--Ccceeee
Confidence 334789999999999999999999999887765444 334332222 345666 4554433
Q ss_pred -----ECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC------CcEEEEecCCCCC
Q 004468 114 -----AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED------GTLRQHDFRQGSS 182 (751)
Q Consensus 114 -----s~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D------g~I~iwDlr~~~~ 182 (751)
..+..|.+||+..+. ...+..+...+..+.|+|+++..|+..+.+ ..|.+||+..+..
T Consensus 160 ~~~~~~~~~~l~~~d~~~g~-----------~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~ 228 (396)
T 3c5m_A 160 EFYHTNPTCRLIKVDIETGE-----------LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV 228 (396)
T ss_dssp HHHHTCCCEEEEEEETTTCC-----------EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC
T ss_pred eeccCCCcceEEEEECCCCc-----------EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce
Confidence 456789999998632 233335677899999999444555554443 3577787755431
Q ss_pred CCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC-----CeEEEEeCCCCCCccccCCC
Q 004468 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----AFARLYDRRMLPPLTSCQKR 257 (751)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D-----~~IriwD~~~~~~~~~~~~~ 257 (751)
. .+.. ......+..++|+|+ +++|+.++.+ +.|++||+.+++...
T Consensus 229 ~-----------------------~l~~-~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~----- 278 (396)
T 3c5m_A 229 R-----------------------KIKE-HAEGESCTHEFWIPD-GSAMAYVSYFKGQTDRVIYKANPETLENEE----- 278 (396)
T ss_dssp E-----------------------ESSC-CCTTEEEEEEEECTT-SSCEEEEEEETTTCCEEEEEECTTTCCEEE-----
T ss_pred e-----------------------Eeec-cCCCccccceEECCC-CCEEEEEecCCCCccceEEEEECCCCCeEE-----
Confidence 1 0111 001235778999995 5666555443 459999987654211
Q ss_pred CCCCCccccccccccccCCccccceEEEEEcC-CCCEEEEEe----------------CCCcEEEEECCCCCcceeeeec
Q 004468 258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSY----------------SGEHVYLMDVNHAGGRAMRYTV 320 (751)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fsp-dg~~Ll~~s----------------~d~~I~lwdl~~~~~~~~~~~~ 320 (751)
+.. .. ... +.|+| ||++|++++ .+..|++||+.++... .....
T Consensus 279 ------l~~----------~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~ 338 (396)
T 3c5m_A 279 ------VMV----------MP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKH 338 (396)
T ss_dssp ------EEE----------CC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEEC
T ss_pred ------eee----------CC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCC
Confidence 000 00 123 88999 999888765 3478999999886532 22222
Q ss_pred CC-----------CceeEEeCCCCCCcccCC
Q 004468 321 GD-----------ASKIMSFTPTLNGLELQP 340 (751)
Q Consensus 321 ~~-----------~~~~~~~sp~~~~~~~~~ 340 (751)
.. .....+|+|+...+.+..
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s 369 (396)
T 3c5m_A 339 STSWDVLDGDRQITHPHPSFTPNDDGVLFTS 369 (396)
T ss_dssp CCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred CCccccccccccCCCCCceEccCCCeEEEEe
Confidence 22 134567888877665543
No 176
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.28 E-value=1.7e-10 Score=135.82 Aligned_cols=236 Identities=11% Similarity=-0.008 Sum_probs=144.2
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCC-----cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCc----
Q 004468 48 GHQGCVNAISWNSKGSLLISGSDDT-----HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE---- 118 (751)
Q Consensus 48 gH~~~V~~l~~s~dg~~LaSgs~Dg-----~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~---- 118 (751)
+|+..+..++|||||++||.++.++ .|+|||+.+++.+... ..+ ..+.+++|+|+ |+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~-~~~-~~~~~~~wspD--g~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LER-VKFSCMAWTHD--GKGMFYNAYPQQDGKS 197 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEE-ECSCCEEECTT--SSEEEEEECCCCSSCC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc-ccC-cccceEEEEeC--CCEEEEEEECCccccc
Confidence 4555788999999999999776544 8999999999876643 222 23778999999 788988888766
Q ss_pred ------------EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeC-----CCcEEEEecCC--
Q 004468 119 ------------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-----DGTLRQHDFRQ-- 179 (751)
Q Consensus 119 ------------V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~-----Dg~I~iwDlr~-- 179 (751)
|++|++.++.... ..+.....|...+..+.|+| +++.|+.++. +..|++||+.+
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t~~~~~------~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~ 270 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGTDQSED------ILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQES 270 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGC------EEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred cccccccCCCCEEEEEECCCCcccc------eEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccc
Confidence 9999998643210 11222233566688999999 5565555543 56899999876
Q ss_pred ----CCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC----CeEEEEeCCCCCCc
Q 004468 180 ----GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----AFARLYDRRMLPPL 251 (751)
Q Consensus 180 ----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D----~~IriwD~~~~~~~ 251 (751)
+... ...+.. +...+.. .|+|+ +..|+..+.+ ..|.+||+.+....
T Consensus 271 ~~~~~~~~----------~~~l~~--------------~~~~~~~-~~s~d-g~~l~~~s~~~~~~~~l~~~d~~~~~~~ 324 (710)
T 2xdw_A 271 NGITGILK----------WVKLID--------------NFEGEYD-YVTNE-GTVFTFKTNRHSPNYRLINIDFTDPEES 324 (710)
T ss_dssp SSSCSSCC----------CEEEEC--------------SSSSCEE-EEEEE-TTEEEEEECTTCTTCEEEEEETTSCCGG
T ss_pred cccCCccc----------eEEeeC--------------CCCcEEE-EEecc-CCEEEEEECCCCCCCEEEEEeCCCCCcc
Confidence 3210 011111 1112222 47785 4555544443 36999998764310
Q ss_pred cccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCcceeeeecCCCceeEEe
Q 004468 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE--HVYLMDVNHAGGRAMRYTVGDASKIMSF 329 (751)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~--~I~lwdl~~~~~~~~~~~~~~~~~~~~~ 329 (751)
..+.+.+. +....+..++|++++..+++...++ .|++||+.+++.......+...+..+++
T Consensus 325 -----------~~~~l~~~------~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~ 387 (710)
T 2xdw_A 325 -----------KWKVLVPE------HEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSG 387 (710)
T ss_dssp -----------GCEEEECC------CSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEEC
T ss_pred -----------cceeccCC------CCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEec
Confidence 01111111 1111478899998777777777787 4677787665432222222333445667
Q ss_pred CCCCCCcc
Q 004468 330 TPTLNGLE 337 (751)
Q Consensus 330 sp~~~~~~ 337 (751)
+|+.+.+.
T Consensus 388 s~d~~~l~ 395 (710)
T 2xdw_A 388 QKKDTEIF 395 (710)
T ss_dssp CTTCSEEE
T ss_pred CCCCCEEE
Confidence 77655444
No 177
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.28 E-value=3.7e-10 Score=117.47 Aligned_cols=233 Identities=10% Similarity=0.047 Sum_probs=151.4
Q ss_pred ccccEEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCc
Q 004468 40 LSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (751)
Q Consensus 40 ~~~~~~L~gH~~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~ 118 (751)
......+..+.....+++|+|+|+ +++++..++.|.+||..++ ...+ ..+...+.+++|.|+ |.++++...++.
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~l~~~~d--g~l~v~~~~~~~ 91 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPE-MHPSHHQNGHCLNKQ--GHLIACSHGLRR 91 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEE-ESSCSSEEEEEECTT--CCEEEEETTTTE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEE-ECCCCCcceeeECCC--CcEEEEecCCCe
Confidence 344566667778889999999998 8889999999999999877 4455 457788999999998 788888777899
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeec---c-cCCceeEEEEecCCCCEEEEEeC-----------------CCcEEEEec
Q 004468 119 VRLFNLSRFSGRGLDDNAITPSALYQ---C-HTRRVKKLAVEVGNPHVVWSASE-----------------DGTLRQHDF 177 (751)
Q Consensus 119 V~vwd~~~~~~~~~~~~~~~~~~~~~---~-h~~~V~~l~~sp~~~~~l~s~s~-----------------Dg~I~iwDl 177 (751)
|.+||..++. ...... . ....+..++++| +++++++.+. .+.|..+|.
T Consensus 92 i~~~d~~~g~----------~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 160 (296)
T 3e5z_A 92 LERQREPGGE----------WESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP 160 (296)
T ss_dssp EEEECSTTCC----------EEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT
T ss_pred EEEEcCCCCc----------EEEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECC
Confidence 9999996532 111111 1 123567899999 6678877432 234444443
Q ss_pred CCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCC-CCCCccccCC
Q 004468 178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR-MLPPLTSCQK 256 (751)
Q Consensus 178 r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~-~~~~~~~~~~ 256 (751)
. ++. ..+. ........++|+|+ ++.+++.+.++.|++||+. .++....
T Consensus 161 ~-g~~------------~~~~--------------~~~~~~~gi~~s~d-g~~lv~~~~~~~i~~~~~~~~g~~~~~--- 209 (296)
T 3e5z_A 161 D-GTL------------SAPI--------------RDRVKPNGLAFLPS-GNLLVSDTGDNATHRYCLNARGETEYQ--- 209 (296)
T ss_dssp T-SCE------------EEEE--------------CCCSSEEEEEECTT-SCEEEEETTTTEEEEEEECSSSCEEEE---
T ss_pred C-CCE------------EEee--------------cCCCCCccEEECCC-CCEEEEeCCCCeEEEEEECCCCcCcCC---
Confidence 3 210 0010 12335678999995 6667777888999999986 2221000
Q ss_pred CCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEe-CCCCCC
Q 004468 257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSF-TPTLNG 335 (751)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~-sp~~~~ 335 (751)
...+ .. + ...+..++++++|+.+++. ++.|++||... +.......... +..++| .|+.+.
T Consensus 210 -------~~~~-~~------~-~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g-~~~~~~~~~~~-~~~~~f~~~d~~~ 270 (296)
T 3e5z_A 210 -------GVHF-TV------E-PGKTDGLRVDAGGLIWASA--GDGVHVLTPDG-DELGRVLTPQT-TSNLCFGGPEGRT 270 (296)
T ss_dssp -------EEEE-CC------S-SSCCCSEEEBTTSCEEEEE--TTEEEEECTTS-CEEEEEECSSC-CCEEEEESTTSCE
T ss_pred -------CeEe-eC------C-CCCCCeEEECCCCCEEEEc--CCeEEEECCCC-CEEEEEECCCC-ceeEEEECCCCCE
Confidence 0111 00 1 1135679999999866555 88999999873 43333333333 677777 465554
Q ss_pred ccc
Q 004468 336 LEL 338 (751)
Q Consensus 336 ~~~ 338 (751)
+..
T Consensus 271 L~v 273 (296)
T 3e5z_A 271 LYM 273 (296)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 178
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.23 E-value=6.5e-10 Score=119.55 Aligned_cols=191 Identities=9% Similarity=0.065 Sum_probs=122.9
Q ss_pred CCCEEEEEe------CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE----------CCCcEEEEEC
Q 004468 61 KGSLLISGS------DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVRLFNL 124 (751)
Q Consensus 61 dg~~LaSgs------~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs----------~Dg~V~vwd~ 124 (751)
+++++.... .|+.|.+||..+++.+..+ ..+..+ .++|+|+ +++++++. .+++|.+||+
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i-~~g~~p--~i~~spd--g~~lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMV-PTAFNG--HVQVSND--GKKIYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEE-ECCEEE--EEEECTT--SSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEe-cCCCCC--ceEECCC--CCEEEEEEecccccccCCCCCEEEEEEC
Confidence 555555543 4789999999999988888 444444 8999999 78888876 3678999999
Q ss_pred CCCCCCCCCCCCCCCceeecc------cCCceeEEEEecCCCCEEEEEeC--CCcEEEEecCCCCCCCCCCCCCCccceE
Q 004468 125 SRFSGRGLDDNAITPSALYQC------HTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (751)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~------h~~~V~~l~~sp~~~~~l~s~s~--Dg~I~iwDlr~~~~~~~~~~~~~~~~~~ 196 (751)
.+. +.+..+.. +......++|+| ++++|+++.. +++|.+||+.+++..
T Consensus 89 ~t~----------~~~~~i~~~~~~~~~g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~------------- 144 (361)
T 2oiz_A 89 DKL----------TFEKEISLPPKRVQGLNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYV------------- 144 (361)
T ss_dssp TTC----------CEEEEEEECTTBCCBCCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEEE-------------
T ss_pred cCC----------cEEEEEEcCccccccCCCcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcEE-------------
Confidence 854 33444432 234567899999 5566666553 689999999886421
Q ss_pred EEe-cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC-CCCccccCCCCCCCCcccccccccccc
Q 004468 197 LLD-LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (751)
Q Consensus 197 l~~-~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (751)
.. ... .....+.+.|.+...+++.+.|+.+.+|+... ++....... ...+.+
T Consensus 145 -~~~i~~-------------~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~-------~~~~~~----- 198 (361)
T 2oiz_A 145 -EDVTAA-------------AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRS-------KQMFSV----- 198 (361)
T ss_dssp -EEEGGG-------------TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEEC-------CCCSCT-----
T ss_pred -EEEecC-------------CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccc-------cceEcC-----
Confidence 11 100 11122557776667888899999999998864 221100000 000000
Q ss_pred CCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 275 ~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
.. ....+.++|++..++..+.++.|+++|+..
T Consensus 199 --~~--~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~ 230 (361)
T 2oiz_A 199 --KD--DPIFIAPALDKDKAHFVSYYGNVYSADFSG 230 (361)
T ss_dssp --TT--SCBCSCCEECSSEEEEEBTTSEEEEEECSS
T ss_pred --CC--CceEEEecccCCEEEEEeCCCeEEEEEecC
Confidence 00 011234577888888888889999999876
No 179
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.23 E-value=1.2e-10 Score=135.81 Aligned_cols=219 Identities=11% Similarity=0.004 Sum_probs=140.2
Q ss_pred cccEEeccCCCcEE---------EEEEC--CCCCE-EEEEeC-CCcEEEEeCC--CCeEEEEeccc-----CCcceEEEE
Q 004468 41 SQERELEGHQGCVN---------AISWN--SKGSL-LISGSD-DTHINVWSYS--SRKLLHSIETG-----HSANVFCTK 100 (751)
Q Consensus 41 ~~~~~L~gH~~~V~---------~l~~s--~dg~~-LaSgs~-Dg~I~IWd~~--~~~~~~~l~~~-----h~~~V~~v~ 100 (751)
...+.|..|...|. ...|+ |||++ ||.++. +..|.+|++. .......+ .. |...+.+++
T Consensus 58 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l-~~~~~~~~~~~~~~~~ 136 (662)
T 3azo_A 58 GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPL-TPVSAVGGGLRWADPV 136 (662)
T ss_dssp SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEEC-SCCCCSTTCEEEEEEE
T ss_pred CCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEec-cCCccCCCCccccCcE
Confidence 34567777877766 66666 99998 776654 5667777765 20334444 44 678899999
Q ss_pred EecCCCCcEEEEEECC----------CcEEEEECCCCC----CCCCCCCCCCCceeec-ccCCceeEEEEecCCCCEEEE
Q 004468 101 FVPETSDELVVSGAGD----------AEVRLFNLSRFS----GRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWS 165 (751)
Q Consensus 101 fsp~s~~~~l~sgs~D----------g~V~vwd~~~~~----~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~l~s 165 (751)
|+|+ |+.|++++.| ..|++||+.... + . ...+. .+...+..++|+| +++.|+.
T Consensus 137 ~spD--g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--------~-~~~l~~~~~~~~~~~~~Sp-DG~~la~ 204 (662)
T 3azo_A 137 LLPE--RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS--------A-VRELSDDAHRFVTGPRLSP-DGRQAVW 204 (662)
T ss_dssp EETT--TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG--------G-SEESSCSCSSEECCCEECT-TSSEEEE
T ss_pred ECCC--CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC--------c-eeEEEecCCCcccCceECC-CCCEEEE
Confidence 9999 8999988877 589999998510 1 1 23444 5567888899999 6677777
Q ss_pred EeCCC--------cEEEEecC-CCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeC
Q 004468 166 ASEDG--------TLRQHDFR-QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS 236 (751)
Q Consensus 166 ~s~Dg--------~I~iwDlr-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~ 236 (751)
++.++ .|++||+. ++... . ...+.. .+...+..+.|+|+ +++++++..
T Consensus 205 ~~~~~~~~~~~~~~i~~~d~~~~g~~~--------~-~~~l~~-------------~~~~~~~~~~~spd-g~l~~~~~~ 261 (662)
T 3azo_A 205 LAWDHPRMPWEGTELKTARVTEDGRFA--------D-TRTLLG-------------GPEEAIAQAEWAPD-GSLIVATDR 261 (662)
T ss_dssp EEECTTCCTTTCEEEEEEEECTTSCEE--------E-EEEEEE-------------ETTBCEEEEEECTT-SCEEEEECT
T ss_pred EECCCCCCCCCCcEEEEEEECCCCccc--------c-cEEeCC-------------CCCceEcceEECCC-CeEEEEECC
Confidence 66553 79999987 34100 0 011110 12356889999996 568888888
Q ss_pred CC--eEEEEeCCCCCCccccCCCCCCCCccccccccccccC-CccccceEEEEEcCCCCEEEEEeCCCcEEEE--ECCC
Q 004468 237 DA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH-GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLM--DVNH 310 (751)
Q Consensus 237 D~--~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lw--dl~~ 310 (751)
++ .|.+||....+..... +.+.... ..-...+..++|+|++++++++.. +.++|| |+.+
T Consensus 262 ~~~~~l~~~~~~~~~~~~l~--------------~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~ 325 (662)
T 3azo_A 262 TGWWNLHRVDPATGAATQLC--------------RREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPES 325 (662)
T ss_dssp TSSCEEEEECTTTCCEEESS--------------CCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTT
T ss_pred CCCeEEEEEECCCCceeecc--------------cccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCC
Confidence 88 5666665444321111 0000000 000001456899999999999988 999999 5554
No 180
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.20 E-value=2.5e-09 Score=109.07 Aligned_cols=220 Identities=7% Similarity=-0.011 Sum_probs=143.3
Q ss_pred cEEEEEECCCCCEEE-EEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCC
Q 004468 52 CVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (751)
Q Consensus 52 ~V~~l~~s~dg~~La-Sgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~ 130 (751)
...+|+++++|++++ +.+.++.|.+||..+..... +...+...+.++++.|+ +.++++.. ++.|.+||.....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~--g~l~v~~~-~~~i~~~d~~~~~-- 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LPFNGLYQPQGLAVDGA--GTVYVTDF-NNRVVTLAAGSNN-- 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-CCCCSCCSCCCEEECTT--CCEEEEET-TTEEEEECTTCSC--
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-EeeCCcCCcceeEECCC--CCEEEEcC-CCEEEEEeCCCce--
Confidence 778999999999888 55788999999976554332 21344467889999998 67666665 8899999987421
Q ss_pred CCCCCCCCCceeec-ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceeccc
Q 004468 131 GLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 209 (751)
Q Consensus 131 ~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 209 (751)
...+. .....+..+++.+ +++++++...++.|.+||..+.... ..
T Consensus 99 ---------~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~-------------~~----------- 144 (270)
T 1rwi_B 99 ---------QTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQT-------------VL----------- 144 (270)
T ss_dssp ---------CEECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCE-------------EC-----------
T ss_pred ---------EeeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeE-------------ee-----------
Confidence 22222 2235688999999 5678878778899999975543211 00
Q ss_pred CCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcC
Q 004468 210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP 289 (751)
Q Consensus 210 ~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fsp 289 (751)
.......+.+++++|+ ++++++...++.|.+||......... .. ... ..+.++++++
T Consensus 145 -~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~~~~~~~~--------------~~------~~~-~~p~~i~~d~ 201 (270)
T 1rwi_B 145 -PFTGLNDPDGVAVDNS-GNVYVTDTDNNRVVKLEAESNNQVVL--------------PF------TDI-TAPWGIAVDE 201 (270)
T ss_dssp -CCCSCCSCCCEEECTT-CCEEEEEGGGTEEEEECTTTCCEEEC--------------CC------SSC-CSEEEEEECT
T ss_pred -ccccCCCceeEEEeCC-CCEEEEECCCCEEEEEecCCCceEee--------------cc------cCC-CCceEEEECC
Confidence 0011234678899995 67777777788999999875431110 00 010 1478999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCC
Q 004468 290 NGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334 (751)
Q Consensus 290 dg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~ 334 (751)
+|..+++...++.|++||..+.............+..+++.|+.+
T Consensus 202 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~ 246 (270)
T 1rwi_B 202 AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT 246 (270)
T ss_dssp TCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCC
T ss_pred CCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCC
Confidence 997777777789999999876432221111123456677777643
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.19 E-value=5.3e-10 Score=118.83 Aligned_cols=205 Identities=8% Similarity=-0.004 Sum_probs=128.6
Q ss_pred CcEEEEEECCCCCEEEEEeCC---C--cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC---------
Q 004468 51 GCVNAISWNSKGSLLISGSDD---T--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD--------- 116 (751)
Q Consensus 51 ~~V~~l~~s~dg~~LaSgs~D---g--~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D--------- 116 (751)
..+..++|+|||++||.++.+ + .|.+|++.+++..... . +.. +..++|+|+ ++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~-~-~~~-~~~~~wspd--g~~l~~~~~~~~~~~~~~~ 133 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKIL-E-AKN-IRSLEWNED--SRKLLIVGFKRREDEDFIF 133 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEE-E-ESE-EEEEEECTT--SSEEEEEEECCCC------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEE-c-CCC-ccceeECCC--CCEEEEEEccCCCcCCcEE
Confidence 568889999999999988754 2 3888888887665444 2 334 999999999 7888877632
Q ss_pred ------------------CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC-------c
Q 004468 117 ------------------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-------T 171 (751)
Q Consensus 117 ------------------g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg-------~ 171 (751)
..|.+||+..+ +.+..+.. . .+..++|+| ++ +++++..++ .
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~----------~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~ 199 (347)
T 2gop_A 134 EDDVPAWFDDLGFFDGEKTTFWIFDTESE----------EVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKF 199 (347)
T ss_dssp ---CCCC---------CEEEEEEEETTTT----------EEEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCC
T ss_pred EcccceeecCcccccCccceEEEEECCCC----------eEEeeecC-C-CcccccCCC-Ce-EEEEEeccccccccccc
Confidence 56889998754 22233443 3 788999999 55 777776553 3
Q ss_pred EEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC--------CeEEEE
Q 004468 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD--------AFARLY 243 (751)
Q Consensus 172 I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D--------~~Iriw 243 (751)
..+|.+.+++. ..+.. + ..+..+ +|+ +++|+.++.+ ..|.+|
T Consensus 200 ~~l~~~d~~~~------------~~l~~--------------~-~~~~~~--spd-g~~l~~~~~~~~~~~~~~~~l~~~ 249 (347)
T 2gop_A 200 WDIYIWEDGKE------------EKMFE--------------K-VSFYAV--DSD-GERILLYGKPEKKYMSEHNKLYIY 249 (347)
T ss_dssp EEEEEEETTEE------------EEEEE--------------E-ESEEEE--EEC-SSCEEEEECCSSSCCCSSCEEEEE
T ss_pred ccEEEeCCCce------------EEecc--------------C-cceeeE--CCC-CCEEEEEEccccCCccccceEEEE
Confidence 45554432210 11110 1 223333 885 6667666644 468888
Q ss_pred eCCCCCCccccCCCCCCCCccccccccccccCCccccceEE-EEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCC
Q 004468 244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH-VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD 322 (751)
Q Consensus 244 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~-v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~ 322 (751)
| +.+.. ... .++ ...+.. +.|+ || .+++++.++.++|| +.+ +..........
T Consensus 250 d--~~~~~--------------~l~------~~~-~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~-g~~~~~~~~~~ 302 (347)
T 2gop_A 250 D--GKEVM--------------GIL------DEV-DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD-GEIKPIAKGRH 302 (347)
T ss_dssp C--SSCEE--------------ESS------TTC-CSEEEEEEEET-TE-EEEEEEETTEEEEE-EES-SSEEEEECSSS
T ss_pred C--CCceE--------------ecc------ccC-CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcC-CceEEEecCCC
Confidence 8 32211 000 111 124775 8999 88 88888899999999 884 33333333344
Q ss_pred CceeEEeCC
Q 004468 323 ASKIMSFTP 331 (751)
Q Consensus 323 ~~~~~~~sp 331 (751)
.+..++++|
T Consensus 303 ~v~~~~~s~ 311 (347)
T 2gop_A 303 WIMGFDVDE 311 (347)
T ss_dssp EEEEEEESS
T ss_pred eEEeeeeeC
Confidence 555677777
No 182
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.18 E-value=2.1e-10 Score=134.68 Aligned_cols=232 Identities=9% Similarity=-0.019 Sum_probs=137.6
Q ss_pred cCCCcEEEEEECCCCCEEE-----EEeCCCcEEEEeCCCCeEEEEecccCCcce--EEEEEecCCCCcEEEEEECCCc--
Q 004468 48 GHQGCVNAISWNSKGSLLI-----SGSDDTHINVWSYSSRKLLHSIETGHSANV--FCTKFVPETSDELVVSGAGDAE-- 118 (751)
Q Consensus 48 gH~~~V~~l~~s~dg~~La-----Sgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V--~~v~fsp~s~~~~l~sgs~Dg~-- 118 (751)
+|...+..++|||||++|| +|+.+.+|+|||+.+++.+. ..+...+ ..++|+|+ |+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~---~~~~~~~~~~~~~wspD--g~~l~~~~~d~~~~ 192 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK---VDVIEGGKYATPKWTPD--SKGFYYEWLPTDPS 192 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS---SCCBSCCTTCCCEECTT--SSEEEEEECCCCTT
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC---CcccCcccccceEEecC--CCEEEEEEecCCCC
Confidence 5666799999999999999 55667899999999887651 1122222 68999999 899999988876
Q ss_pred -----------EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC----cEEEEecCCCCCC
Q 004468 119 -----------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG----TLRQHDFRQGSSC 183 (751)
Q Consensus 119 -----------V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg----~I~iwDlr~~~~~ 183 (751)
|++|++.++.... ..+.....|...+..+.|+|++ +.|+.++.++ .|.+||..++..
T Consensus 193 ~~~~~~~~~~~v~~~~l~t~~~~~------~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~~- 264 (695)
T 2bkl_A 193 IKVDERPGYTTIRYHTLGTEPSKD------TVVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKDF- 264 (695)
T ss_dssp SCGGGGGGGCEEEEEETTSCGGGC------EEEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSSC-
T ss_pred CccccCCCCCEEEEEECCCCchhc------eEEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCce-
Confidence 9999998653210 1233334466788999999955 5555555444 555555433221
Q ss_pred CCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe---CCCeEEEEeCCCCCCccccCCCCCC
Q 004468 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG---SDAFARLYDRRMLPPLTSCQKRMSP 260 (751)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs---~D~~IriwD~~~~~~~~~~~~~~~~ 260 (751)
..+.. +...+....+ +++ .+++++. .++.|.+||+.+....
T Consensus 265 -----------~~l~~--------------~~~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~~d~~~~~~~--------- 308 (695)
T 2bkl_A 265 -----------RLLVK--------------GVGAKYEVHA-WKD-RFYVLTDEGAPRQRVFEVDPAKPARA--------- 308 (695)
T ss_dssp -----------EEEEE--------------CSSCCEEEEE-ETT-EEEEEECTTCTTCEEEEEBTTBCSGG---------
T ss_pred -----------EEeec--------------CCCceEEEEe-cCC-cEEEEECCCCCCCEEEEEeCCCCCcc---------
Confidence 11111 1122334445 434 4544444 3588999998764310
Q ss_pred CCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CCcceeeeec-CCCceeEEeCCCCCCcc
Q 004468 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH-AGGRAMRYTV-GDASKIMSFTPTLNGLE 337 (751)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~-~~~~~~~~~~-~~~~~~~~~sp~~~~~~ 337 (751)
..+.+.+. +....+..++|+ ++..+++...|+..+||.+.. ++........ ...+..++++|+.+.+.
T Consensus 309 --~~~~l~~~------~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~ 378 (695)
T 2bkl_A 309 --SWKEIVPE------DSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAY 378 (695)
T ss_dssp --GCEEEECC------CSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEE
T ss_pred --CCeEEecC------CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEE
Confidence 00111110 112247888888 667777788888888876552 2222111111 22334455666554444
No 183
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.13 E-value=4.7e-09 Score=107.05 Aligned_cols=201 Identities=7% Similarity=0.022 Sum_probs=140.2
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCC
Q 004468 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (751)
Q Consensus 49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~ 128 (751)
+...+.+|+++++|+++++.. ++.|.+||...... ..+.......+..+++.|+ +.++++...++.|.+|+.....
T Consensus 65 ~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~--g~l~v~~~~~~~i~~~~~~~~~ 140 (270)
T 1rwi_B 65 GLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQ--GAVYVADRGNNRVVKLAAGSKT 140 (270)
T ss_dssp SCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTT--CCEEEEEGGGTEEEEECTTCCS
T ss_pred CcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECCC--CCEEEEECCCCEEEEEECCCce
Confidence 335688999999999777766 88999999876543 3332234467899999998 7888887788999999765321
Q ss_pred CCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecc
Q 004468 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (751)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (751)
...........+..+++++ +++++++...++.|.+||....... ..
T Consensus 141 ----------~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~-------------~~---------- 186 (270)
T 1rwi_B 141 ----------QTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQV-------------VL---------- 186 (270)
T ss_dssp ----------CEECCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTTTCCEE-------------EC----------
T ss_pred ----------eEeeccccCCCceeEEEeC-CCCEEEEECCCCEEEEEecCCCceE-------------ee----------
Confidence 1111222334678899999 5678877777899999998764311 00
Q ss_pred cCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEc
Q 004468 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (751)
Q Consensus 209 ~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fs 288 (751)
.......+.+++++++ +.++++...++.|.+||........ . + ..+. ..+.+++++
T Consensus 187 --~~~~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~~~~~~~--------------~-~-----~~~~-~~p~~i~~~ 242 (270)
T 1rwi_B 187 --PFTDITAPWGIAVDEA-GTVYVTEHNTNQVVKLLAGSTTSTV--------------L-P-----FTGL-NTPLAVAVD 242 (270)
T ss_dssp --CCSSCCSEEEEEECTT-CCEEEEETTTSCEEEECTTCSCCEE--------------C-C-----CCSC-SCEEEEEEC
T ss_pred --cccCCCCceEEEECCC-CCEEEEECCCCcEEEEcCCCCccee--------------e-c-----cCCC-CCceeEEEC
Confidence 0011245788999995 5777777778899999986432110 0 0 0011 148899999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC
Q 004468 289 PNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 289 pdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
++|+.+++...++.|++|++...
T Consensus 243 ~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 243 SDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp TTCCEEEEEGGGTEEEEECCCGG
T ss_pred CCCCEEEEECCCCEEEEEcCCCc
Confidence 99998888888999999998873
No 184
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.13 E-value=2.3e-10 Score=122.82 Aligned_cols=181 Identities=15% Similarity=0.102 Sum_probs=128.5
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe---------EEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004468 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRK---------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (751)
Q Consensus 52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~---------~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw 122 (751)
.++.|++++...+|++|+.| .++||++.... ........+.. |..|+| + +.+|+++ .++.|++|
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d--~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--H--GDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--E--TTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--C--CCEEEEE-cCCcEEEE
Confidence 69999999999999999998 46669865332 11111124566 999999 5 7899988 88999999
Q ss_pred ECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004468 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (751)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~ 202 (751)
|+.... .......|...|.++.+.+. + +++++.||+|.+||+.++... .
T Consensus 112 dv~sl~----------~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~---------------~--- 160 (388)
T 1xip_A 112 DLEELS----------EFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTK---------------Q--- 160 (388)
T ss_dssp ESSSTT----------CEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEE---------------E---
T ss_pred Echhhh----------ccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCccc---------------c---
Confidence 998642 23445567788888887652 2 888999999999999876521 0
Q ss_pred CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC--ccccCCCCCCCCcccccccccccc-CCccc
Q 004468 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP--LTSCQKRMSPPPCVNYFCPMHLSE-HGRSS 279 (751)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~ 279 (751)
....|+|++|+|. + +++|..||.|++|+...... ...+. +|..+.+ .+| .
T Consensus 161 -----------~~~~Vs~v~WSpk-G--~~vg~~dg~i~~~~~~~~~~~~k~~I~------------~Pp~~~~~~~~-~ 213 (388)
T 1xip_A 161 -----------LAQNVTSFDVTNS-Q--LAVLLKDRSFQSFAWRNGEMEKQFEFS------------LPSELEELPVE-E 213 (388)
T ss_dssp -----------EEESEEEEEECSS-E--EEEEETTSCEEEEEEETTEEEEEEEEC------------CCHHHHTSCTT-T
T ss_pred -----------ccCCceEEEEcCC-c--eEEEEcCCcEEEEcCCCccccccceec------------CCcccccccCC-C
Confidence 2347999999995 4 78899999999998865431 11110 1111111 122 2
Q ss_pred cceEEEEEcCCCCEEEEE
Q 004468 280 LHLTHVTFSPNGEEVLLS 297 (751)
Q Consensus 280 ~~vt~v~fspdg~~Ll~~ 297 (751)
..|.+|.|.+++.+|++=
T Consensus 214 ~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 214 YSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp SEEEEEEESSSSEEEEEE
T ss_pred eeEEEEEEecCCeEEEEE
Confidence 469999999999988763
No 185
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.11 E-value=2.5e-09 Score=110.34 Aligned_cols=192 Identities=9% Similarity=0.048 Sum_probs=138.2
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCC-cceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCC
Q 004468 60 SKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS-ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAIT 138 (751)
Q Consensus 60 ~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~-~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~ 138 (751)
..+++|++++.|+.|.+||.++++.+.++ ..+. ..+.++.++|+ |++|+ +.++.|..||. ++ +
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~-~~~~~~~~~~~~~~pd--G~ilv--s~~~~V~~~d~-~G----------~ 66 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEY-PLEKGWECNSVAATKA--GEILF--SYSKGAKMITR-DG----------R 66 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEE-ECCTTCCCCEEEECTT--SCEEE--ECBSEEEEECT-TS----------C
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEe-CCCccCCCcCeEECCC--CCEEE--eCCCCEEEECC-CC----------C
Confidence 34689999999999999999999999999 4444 57899999999 88888 45788999998 43 3
Q ss_pred Cceeeccc-CCceeEEEEecCCCCEEEEEeC-CCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCcc
Q 004468 139 PSALYQCH-TRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL 216 (751)
Q Consensus 139 ~~~~~~~h-~~~V~~l~~sp~~~~~l~s~s~-Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 216 (751)
.+..+..+ ...+.++.+.+ +++++++.+. ++.|..+|. +++ .++....... ...+..
T Consensus 67 ~~W~~~~~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk--------------~l~~~~~~~~-----~~~~~~ 125 (276)
T 3no2_A 67 ELWNIAAPAGCEMQTARILP-DGNALVAWCGHPSTILEVNM-KGE--------------VLSKTEFETG-----IERPHA 125 (276)
T ss_dssp EEEEEECCTTCEEEEEEECT-TSCEEEEEESTTEEEEEECT-TSC--------------EEEEEEECCS-----CSSGGG
T ss_pred EEEEEcCCCCccccccEECC-CCCEEEEecCCCCEEEEEeC-CCC--------------EEEEEeccCC-----CCcccc
Confidence 45566554 34688899999 6788888776 777877775 333 1222111000 001112
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEE
Q 004468 217 SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL 296 (751)
Q Consensus 217 ~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~ 296 (751)
....+++.+ +++++++...++.|..||.. ++.+..+... ..+.++.+.++|+.|++
T Consensus 126 ~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~----------------------~~~~~~~~~~~g~~~v~ 181 (276)
T 3no2_A 126 QFRQINKNK-KGNYLVPLFATSEVREIAPN-GQLLNSVKLS----------------------GTPFSSAFLDNGDCLVA 181 (276)
T ss_dssp SCSCCEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECS----------------------SCCCEEEECTTSCEEEE
T ss_pred cccCceECC-CCCEEEEecCCCEEEEECCC-CCEEEEEECC----------------------CCccceeEcCCCCEEEE
Confidence 344556777 57899999999999999987 7654433210 12456788999999999
Q ss_pred EeCCCcEEEEECCCCC
Q 004468 297 SYSGEHVYLMDVNHAG 312 (751)
Q Consensus 297 ~s~d~~I~lwdl~~~~ 312 (751)
++.++.|+.||..+++
T Consensus 182 ~~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 182 CGDAHCFVQLNLESNR 197 (276)
T ss_dssp CBTTSEEEEECTTTCC
T ss_pred eCCCCeEEEEeCcCCc
Confidence 9888899999999865
No 186
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.09 E-value=1e-08 Score=105.72 Aligned_cols=231 Identities=11% Similarity=0.115 Sum_probs=158.2
Q ss_pred cccccccchhhhccccccEEeccCC-CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecC
Q 004468 26 VNHSLQMHSSLVRRLSQERELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (751)
Q Consensus 26 ~~~~l~~~~~~i~~~~~~~~L~gH~-~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~ 104 (751)
.+..+++++ ..+.+.+.++..|. ..++++.++|+|++|+ +.++.|..||. +++.+..+..++...+.++.+.|+
T Consensus 13 ~~~~v~~~d--~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~d 87 (276)
T 3no2_A 13 GWNKIAIIN--KDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPD 87 (276)
T ss_dssp TCSEEEEEE--TTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTT
T ss_pred CCCEEEEEE--CCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCC
Confidence 345666665 33566677787776 5789999999999999 45778999999 899999885444467999999999
Q ss_pred CCCcEEEEEEC-CCcEEEEECCCCCCCCCCCCCCCCceeec------ccCCceeEEEEecCCCCEEEEEeCCCcEEEEec
Q 004468 105 TSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQ------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF 177 (751)
Q Consensus 105 s~~~~l~sgs~-Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~------~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDl 177 (751)
|++|++.+. ++.|..+|.. + +.+..+. .+......+++.+ +++++++...++.|..||.
T Consensus 88 --G~~lv~~~~~~~~v~~vd~~---G--------k~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~ 153 (276)
T 3no2_A 88 --GNALVAWCGHPSTILEVNMK---G--------EVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAP 153 (276)
T ss_dssp --SCEEEEEESTTEEEEEECTT---S--------CEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECT
T ss_pred --CCEEEEecCCCCEEEEEeCC---C--------CEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEECC
Confidence 899998887 6777766653 2 2222221 2223455667778 6789999999999999998
Q ss_pred CCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCC
Q 004468 178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR 257 (751)
Q Consensus 178 r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~ 257 (751)
. ++ .+|....+ ..+.++.+.+ ++++++++..++.|..+|..+++.+.++...
T Consensus 154 ~-G~--------------~~w~~~~~------------~~~~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~ 205 (276)
T 3no2_A 154 N-GQ--------------LLNSVKLS------------GTPFSSAFLD-NGDCLVACGDAHCFVQLNLESNRIVRRVNAN 205 (276)
T ss_dssp T-SC--------------EEEEEECS------------SCCCEEEECT-TSCEEEECBTTSEEEEECTTTCCEEEEEEGG
T ss_pred C-CC--------------EEEEEECC------------CCccceeEcC-CCCEEEEeCCCCeEEEEeCcCCcEEEEecCC
Confidence 7 64 34433321 1344566777 4788888888889999999988766554211
Q ss_pred CCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCCcceeee
Q 004468 258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG--------EHVYLMDVNHAGGRAMRY 318 (751)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d--------~~I~lwdl~~~~~~~~~~ 318 (751)
.. .+.....++.+...++|+.+++.+.. +..+++++...++....+
T Consensus 206 ~~---------------~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~ 259 (276)
T 3no2_A 206 DI---------------EGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQL 259 (276)
T ss_dssp GS---------------BSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEE
T ss_pred CC---------------CCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEe
Confidence 00 00011137899999999988887532 345777776544444444
No 187
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.08 E-value=5.2e-08 Score=100.48 Aligned_cols=204 Identities=10% Similarity=0.085 Sum_probs=142.4
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEEC
Q 004468 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (751)
Q Consensus 45 ~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~ 124 (751)
.+..+...+.+|+++++|+++++...++.|.+||.. ++........+...+.++++.++ +.++++...++.|..||.
T Consensus 9 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~ 85 (299)
T 2z2n_A 9 NLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSD--GEVWFTENAANKIGRITK 85 (299)
T ss_dssp ECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTT--SCEEEEETTTTEEEEECT
T ss_pred cCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCC--CCEEEeCCCCCeEEEECC
Confidence 345666789999999999988887778999999988 55433222345678999999998 788888777889999997
Q ss_pred CCCCCCCCCCCCCCCceee--cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004468 125 SRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (751)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~ 202 (751)
... ...+ ......+..+++.+ ++.++++...++.|..||. +++.. .+..
T Consensus 86 ~g~------------~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~-------------~~~~-- 136 (299)
T 2z2n_A 86 KGI------------IKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIR-------------EYEL-- 136 (299)
T ss_dssp TSC------------EEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEE-------------EEEC--
T ss_pred CCc------------EEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEE-------------EecC--
Confidence 621 1222 22455788999998 5678777777889999997 43310 1100
Q ss_pred CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccce
Q 004468 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (751)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v 282 (751)
+.....+..+++.++ ++++++...++.|..||. +.+... ...+. . ...+
T Consensus 137 ---------~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~-~g~~~~-------------~~~~~------~-~~~~ 185 (299)
T 2z2n_A 137 ---------PNKGSYPSFITLGSD-NALWFTENQNNAIGRITE-SGDITE-------------FKIPT------P-ASGP 185 (299)
T ss_dssp ---------SSTTCCEEEEEECTT-SCEEEEETTTTEEEEECT-TCCEEE-------------EECSS------T-TCCE
T ss_pred ---------CCCCCCCceEEEcCC-CCEEEEeCCCCEEEEEcC-CCcEEE-------------eeCCC------C-CCcc
Confidence 112345788999995 677777767789999998 443111 00000 1 1137
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468 283 THVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 283 t~v~fspdg~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
..++++++|+.+++...++.|++||. ++.
T Consensus 186 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~ 214 (299)
T 2z2n_A 186 VGITKGNDDALWFVEIIGNKIGRITT-SGE 214 (299)
T ss_dssp EEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred eeEEECCCCCEEEEccCCceEEEECC-CCc
Confidence 89999999997777667889999999 543
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.08 E-value=9.2e-09 Score=106.79 Aligned_cols=204 Identities=10% Similarity=0.054 Sum_probs=134.2
Q ss_pred cEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEec--cc-CCcceEEEEEecCCCCcEEEEEEC----
Q 004468 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE--TG-HSANVFCTKFVPETSDELVVSGAG---- 115 (751)
Q Consensus 43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~--~~-h~~~V~~v~fsp~s~~~~l~sgs~---- 115 (751)
...+..+.+.+.+|+|+++|+++++...++.|.+||..+++...... .+ ....+..+++.|+ |+++++.+.
T Consensus 61 ~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~--G~l~vtd~~~g~~ 138 (296)
T 3e5z_A 61 LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPD--GSLWFSDPTYGID 138 (296)
T ss_dssp EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTT--SCEEEEECSHHHH
T ss_pred eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCC--CCEEEECCccccc
Confidence 45566778889999999999998888888999999998777544331 11 1235678999998 888887431
Q ss_pred -------------CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC-CCC
Q 004468 116 -------------DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR-QGS 181 (751)
Q Consensus 116 -------------Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr-~~~ 181 (751)
.+.|..++.. + .+..+..+...+..++|+| +++++++.+.++.|.+||+. .+.
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~---g---------~~~~~~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~ 205 (296)
T 3e5z_A 139 KPEEGYGGEMELPGRWVFRLAPD---G---------TLSAPIRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGE 205 (296)
T ss_dssp CGGGSSCCCCCSSSCEEEEECTT---S---------CEEEEECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSC
T ss_pred cccccccccccCCCcEEEEECCC---C---------CEEEeecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCc
Confidence 2344444433 1 1344455667788999999 55666888889999999987 222
Q ss_pred CCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCC
Q 004468 182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 261 (751)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~ 261 (751)
.. ....++ .. ....+..++++++ ++++++. ++.|.+||.. ++.+..+
T Consensus 206 ~~--------~~~~~~-~~-------------~~~~p~~i~~d~~-G~l~v~~--~~~v~~~~~~-g~~~~~~------- 252 (296)
T 3e5z_A 206 TE--------YQGVHF-TV-------------EPGKTDGLRVDAG-GLIWASA--GDGVHVLTPD-GDELGRV------- 252 (296)
T ss_dssp EE--------EEEEEE-CC-------------SSSCCCSEEEBTT-SCEEEEE--TTEEEEECTT-SCEEEEE-------
T ss_pred Cc--------CCCeEe-eC-------------CCCCCCeEEECCC-CCEEEEc--CCeEEEECCC-CCEEEEE-------
Confidence 00 000111 10 2234567899995 6655555 8899999986 3322111
Q ss_pred CccccccccccccCCccccceEEEEE-cCCCCEEEEEeCCCcEEEEECCC
Q 004468 262 PCVNYFCPMHLSEHGRSSLHLTHVTF-SPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~vt~v~f-spdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
..+.. +++++| +|+++.|++++.+ .++-++..+
T Consensus 253 -------------~~~~~--~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~ 286 (296)
T 3e5z_A 253 -------------LTPQT--TSNLCFGGPEGRTLYMTVST-EFWSIETNV 286 (296)
T ss_dssp -------------ECSSC--CCEEEEESTTSCEEEEEETT-EEEEEECSC
T ss_pred -------------ECCCC--ceeEEEECCCCCEEEEEcCC-eEEEEEccc
Confidence 01111 678899 6899999998875 566666666
No 189
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.08 E-value=1.8e-08 Score=106.36 Aligned_cols=216 Identities=13% Similarity=0.102 Sum_probs=133.5
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCC----CcEEEEeCCCCeEEEEec-ccCCcceEEEEEecCCCCcEEEEEEC------
Q 004468 47 EGHQGCVNAISWNSKGSLLISGSDD----THINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAG------ 115 (751)
Q Consensus 47 ~gH~~~V~~l~~s~dg~~LaSgs~D----g~I~IWd~~~~~~~~~l~-~~h~~~V~~v~fsp~s~~~~l~sgs~------ 115 (751)
..+...|.+++|+++|++++++..+ +.|.+||..++.....+. ..+...+.++++.|+ +.++++...
T Consensus 83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSK--GGFYFTDFRGYSTNP 160 (333)
T ss_dssp ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTT--SCEEEEECCCBTTBC
T ss_pred eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCC--CCEEEEeccccccCC
Confidence 3567889999999999988888777 689999998776543331 234567999999998 788877654
Q ss_pred CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCC-CCCCCCCCCCCccc
Q 004468 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG-SSCPPAGSSHQECR 194 (751)
Q Consensus 116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~-~~~~~~~~~~~~~~ 194 (751)
.+.|..+|.... .+..+..+...+..++|+|++..++++.+.++.|.+||+.+. ..... -..
T Consensus 161 ~~~l~~~~~~~~-----------~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~------~~~ 223 (333)
T 2dg1_A 161 LGGVYYVSPDFR-----------TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQP------FGA 223 (333)
T ss_dssp CEEEEEECTTSC-----------CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEE------EEE
T ss_pred CceEEEEeCCCC-----------EEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCccc------ccc
Confidence 244555554421 122333344567899999944335666677899999998642 21000 000
Q ss_pred eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004468 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (751)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (751)
..... ...+ ..+..++++++ ++++++...++.|.+||.. .+.+..+. .....
T Consensus 224 ~~~~~-----------~~~~-~~~~~i~~d~~-G~l~v~~~~~~~v~~~d~~-g~~~~~~~--------------~~~~~ 275 (333)
T 2dg1_A 224 TIPYY-----------FTGH-EGPDSCCIDSD-DNLYVAMYGQGRVLVFNKR-GYPIGQIL--------------IPGRD 275 (333)
T ss_dssp EEEEE-----------CCSS-SEEEEEEEBTT-CCEEEEEETTTEEEEECTT-SCEEEEEE--------------CTTGG
T ss_pred eEEEe-----------cCCC-CCCCceEECCC-CCEEEEEcCCCEEEEECCC-CCEEEEEE--------------cCCCc
Confidence 00100 0111 35678999995 6787777788999999984 33221110 00000
Q ss_pred CCccccceEEEEEcCCCCEEEEEeCCC------cEEEEECCC
Q 004468 275 HGRSSLHLTHVTFSPNGEEVLLSYSGE------HVYLMDVNH 310 (751)
Q Consensus 275 ~g~~~~~vt~v~fspdg~~Ll~~s~d~------~I~lwdl~~ 310 (751)
.++.. .+.+++|+||++.|++++.++ .|+.+++..
T Consensus 276 ~g~~~-~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~~ 316 (333)
T 2dg1_A 276 EGHML-RSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFA 316 (333)
T ss_dssp GTCSC-BCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECSS
T ss_pred ccccc-CcceEEECCCCCEEEEEeCccCCCCCceEEEEeccc
Confidence 11111 378899999998887776653 455555443
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.07 E-value=6.2e-09 Score=110.20 Aligned_cols=223 Identities=9% Similarity=0.072 Sum_probs=148.4
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCC
Q 004468 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (751)
Q Consensus 51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~ 130 (751)
.....+.+. +++++++...++.|.+||..+++.+.++ . .......++++|+ +.++++...++.|.+||+.+.
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i-~-~~~~p~~i~~~~~--g~lyv~~~~~~~v~~iD~~t~--- 115 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI-T-GFTSPRYIHFLSD--EKAYVTQIWDYRIFIINPKTY--- 115 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE-E-CCSSEEEEEEEET--TEEEEEEBSCSEEEEEETTTT---
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc-C-CCCCCcEEEEeCC--CeEEEEECCCCeEEEEECCCC---
Confidence 456778874 4667777777899999999999998888 3 3467899999998 666666558999999999864
Q ss_pred CCCCCCCCCceeecccC-----CceeEEEEecCCCCEEEEEe-CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004468 131 GLDDNAITPSALYQCHT-----RRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (751)
Q Consensus 131 ~~~~~~~~~~~~~~~h~-----~~V~~l~~sp~~~~~l~s~s-~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (751)
+....+.... .....+++ . ++.++++.. .+++|.+||+.+++.. .....
T Consensus 116 -------~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~--------------~~i~~-- 170 (328)
T 3dsm_A 116 -------EITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVV--------------DELTI-- 170 (328)
T ss_dssp -------EEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEE--------------EEEEC--
T ss_pred -------eEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEE--------------EEEEc--
Confidence 2233333222 24567777 3 566666654 4899999999886521 11000
Q ss_pred eecccCCCCCccceEEEEEeCCCCcEEEEEeCC----------CeEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004468 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----------AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (751)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D----------~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (751)
......+.++|+ +++++++..+ +.|.+||..+.+....+. +.
T Consensus 171 ----------g~~p~~i~~~~d-G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~----------------~~- 222 (328)
T 3dsm_A 171 ----------GIQPTSLVMDKY-NKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK----------------FK- 222 (328)
T ss_dssp ----------SSCBCCCEECTT-SEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE----------------CC-
T ss_pred ----------CCCccceEEcCC-CCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe----------------cC-
Confidence 112356788884 6766666554 789999998765322110 00
Q ss_pred CCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeec--CCCceeEEeCCCCCCcccC
Q 004468 275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV--GDASKIMSFTPTLNGLELQ 339 (751)
Q Consensus 275 ~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~--~~~~~~~~~sp~~~~~~~~ 339 (751)
.+ .....++|+|++++|+++.. .|++||+.+++.....+.. ...+..++++|+...+...
T Consensus 223 ~g---~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva 284 (328)
T 3dsm_A 223 LG---DWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVA 284 (328)
T ss_dssp TT---CCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEE
T ss_pred CC---CCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEE
Confidence 01 13789999999999988765 9999999886532222211 3566778888865554433
No 191
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.07 E-value=3.7e-08 Score=106.17 Aligned_cols=235 Identities=11% Similarity=0.044 Sum_probs=144.7
Q ss_pred ccccccEEeccCCCcEEEEEECCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeccc------CCcceEEEEE
Q 004468 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETG------HSANVFCTKF 101 (751)
Q Consensus 38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs----------~Dg~I~IWd~~~~~~~~~l~~~------h~~~V~~v~f 101 (751)
.+.+.+.++..-..+ .+.++|||++|..+. .++.|.+||..+.+.+..+..+ +......+.|
T Consensus 55 ~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~ 132 (373)
T 2mad_H 55 GSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNAN 132 (373)
T ss_pred CCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEE
Confidence 345566667654444 999999999988886 3678999999988888776433 1133558999
Q ss_pred ecCCCCcEEEEEEC--CCcEEEEECCCCCCCCCCCCCCCCcee-ecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC
Q 004468 102 VPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (751)
Q Consensus 102 sp~s~~~~l~sgs~--Dg~V~vwd~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr 178 (751)
+|+ |++|+.+.. ++.|.++| .+. +.+.. +.. . .++.+.|.+++.+++.+.||++.++|+
T Consensus 133 spD--G~~l~v~n~~~~~~v~viD-~t~----------~~~~~~i~~-~---~~~~~~~~~~~~~~~~~~dg~~~~vd~- 194 (373)
T 2mad_H 133 TPN--NADLLFFQFAAGPAVGLVV-QGG----------SSDDQLLSS-P---TCYHIHPGAPSTFYLLCAQGGLAKTDH- 194 (373)
T ss_pred CCC--CCEEEEEecCCCCeEEEEE-CCC----------CEEeEEcCC-C---ceEEEEeCCCceEEEEcCCCCEEEEEC-
Confidence 999 788887764 57899999 754 22333 321 1 124556766677888889999999998
Q ss_pred CCCCCCCCC-----CCCC-----------c---------cceEEEecccCceecccCCC----------CCccceEEEEE
Q 004468 179 QGSSCPPAG-----SSHQ-----------E---------CRNILLDLRCGAKRSLADPP----------KQTLSLKSCDI 223 (751)
Q Consensus 179 ~~~~~~~~~-----~~~~-----------~---------~~~~l~~~~~~~~~~~~~~~----------~~~~~v~~i~~ 223 (751)
+++...... .... . ....++++..+....+.... ........+.+
T Consensus 195 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~ 274 (373)
T 2mad_H 195 AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAY 274 (373)
T ss_pred CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEE
Confidence 654331000 0000 0 01112222111100000000 00112334778
Q ss_pred eCCCCcEEEEEeC----------CCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCC-
Q 004468 224 SSTRPHLLLVGGS----------DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE- 292 (751)
Q Consensus 224 sp~~~~~l~sgs~----------D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~- 292 (751)
+|+ +..+.++.. .+.|.++|..+.+.+..+.. +. ...+++|+|||+
T Consensus 275 s~d-~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-------------------g~---~p~~i~~s~Dg~~ 331 (373)
T 2mad_H 275 LKS-SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-------------------GH---DVDAISVAQDGGP 331 (373)
T ss_pred CCC-CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-------------------CC---CcCeEEECCCCCe
Confidence 885 455555432 35899999988765443311 11 367899999999
Q ss_pred EEEEEe-CCCcEEEEECCCCCcce
Q 004468 293 EVLLSY-SGEHVYLMDVNHAGGRA 315 (751)
Q Consensus 293 ~Ll~~s-~d~~I~lwdl~~~~~~~ 315 (751)
.|+++. .++.|.+||+.+.+...
T Consensus 332 ~l~v~~~~~~~V~ViD~~t~~vv~ 355 (373)
T 2mad_H 332 DLYALSAGTEVLHIYDAGAGDQDQ 355 (373)
T ss_pred EEEEEcCCCCeEEEEECCCCCEEe
Confidence 677766 58999999999965443
No 192
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.05 E-value=2.4e-08 Score=105.57 Aligned_cols=229 Identities=10% Similarity=-0.037 Sum_probs=145.9
Q ss_pred ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCC----cceEEEEEecCCCCcEEEEE
Q 004468 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS----ANVFCTKFVPETSDELVVSG 113 (751)
Q Consensus 38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~----~~V~~v~fsp~s~~~~l~sg 113 (751)
.+.+.+.++. .......|+++++|+++++...++.|.+||..+++....+..+.. .....+++ .. +.++++.
T Consensus 72 ~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~--~~lyv~~ 147 (328)
T 3dsm_A 72 NTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YG--KYVYVNC 147 (328)
T ss_dssp TTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ET--TEEEEEE
T ss_pred cccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-EC--CEEEEEc
Confidence 3456666664 346788999999997666665899999999999988877743321 14566777 33 4555555
Q ss_pred E-CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC----------CcEEEEecCCCCC
Q 004468 114 A-GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED----------GTLRQHDFRQGSS 182 (751)
Q Consensus 114 s-~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D----------g~I~iwDlr~~~~ 182 (751)
. .++.|.++|+.+. +.+..+.. ......++++| ++++++++..+ +.|.++|..+++.
T Consensus 148 ~~~~~~v~viD~~t~----------~~~~~i~~-g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v 215 (328)
T 3dsm_A 148 WSYQNRILKIDTETD----------KVVDELTI-GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV 215 (328)
T ss_dssp CTTCCEEEEEETTTT----------EEEEEEEC-SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE
T ss_pred CCCCCEEEEEECCCC----------eEEEEEEc-CCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeE
Confidence 4 4899999999864 22334432 23456788998 56777666554 7899999887641
Q ss_pred CCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCC
Q 004468 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (751)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~ 262 (751)
. ..+.+. .......++|+|+ ++.|.++.. .|.+||..+.+....
T Consensus 216 ~------------~~~~~~------------~g~~p~~la~~~d-~~~lyv~~~--~v~~~d~~t~~~~~~--------- 259 (328)
T 3dsm_A 216 E------------KQFKFK------------LGDWPSEVQLNGT-RDTLYWINN--DIWRMPVEADRVPVR--------- 259 (328)
T ss_dssp E------------EEEECC------------TTCCCEEEEECTT-SCEEEEESS--SEEEEETTCSSCCSS---------
T ss_pred E------------EEEecC------------CCCCceeEEEecC-CCEEEEEcc--EEEEEECCCCceeee---------
Confidence 1 001110 0125788999995 566666554 899999987653210
Q ss_pred ccccccccccccCCccccceEEEEEcCC-CCEEEEE----eCCCcEEEEECCCCCcceeeeecCCCceeEEeC
Q 004468 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLS----YSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT 330 (751)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~vt~v~fspd-g~~Ll~~----s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~s 330 (751)
.+.+. + ......++++|+ +..+++. ..++.|++||.. ++ ....+..+..+..++|.
T Consensus 260 ---~~~~~-----~--~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~-~~~~i~~G~~P~~~~~~ 320 (328)
T 3dsm_A 260 ---PFLEF-----R--DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK-LIDEFYVGIIPGAFCWK 320 (328)
T ss_dssp ---CSBCC-----C--SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC-EEEEEEEEESEEEEEEE
T ss_pred ---eeecC-----C--CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC-EEEEEEeccCcceEEEe
Confidence 00000 0 124789999995 4544555 568999999998 44 33344445555555554
No 193
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.03 E-value=4.1e-08 Score=111.49 Aligned_cols=216 Identities=12% Similarity=0.136 Sum_probs=144.1
Q ss_pred cccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC--CCeEEEEecccCCcceEEEEEe----cCCCCcEEEE
Q 004468 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--SRKLLHSIETGHSANVFCTKFV----PETSDELVVS 112 (751)
Q Consensus 39 ~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~--~~~~~~~l~~~h~~~V~~v~fs----p~s~~~~l~s 112 (751)
+.+.+.++... ..+..+.|+|||++|.+++.|+.|.+||+. +++.+..+..+ .....++|+ |+ |+++++
T Consensus 186 t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G--~~P~~ia~s~~~~pD--Gk~l~v 260 (567)
T 1qks_A 186 TYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG--SEARSIETSKMEGWE--DKYAIA 260 (567)
T ss_dssp TCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC--SEEEEEEECCSTTCT--TTEEEE
T ss_pred CCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC--CCCceeEEccccCCC--CCEEEE
Confidence 34555666533 357799999999999999999999999995 78888887433 346799999 68 777665
Q ss_pred E-ECCCcEEEEECCCCCCCCCCCCCCCCceeecc----------cCC-ceeEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 004468 113 G-AGDAEVRLFNLSRFSGRGLDDNAITPSALYQC----------HTR-RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (751)
Q Consensus 113 g-s~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~----------h~~-~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~ 180 (751)
+ ..+++|.|+|..+. +++..+.. |.. +|..+..+++++.++++..++|.|.++|....
T Consensus 261 ~n~~~~~v~ViD~~t~----------~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~ 330 (567)
T 1qks_A 261 GAYWPPQYVIMDGETL----------EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL 330 (567)
T ss_dssp EEEETTEEEEEETTTC----------CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCS
T ss_pred EEccCCeEEEEECCCC----------cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCC
Confidence 5 45699999998764 33443321 222 68889999877777888888899999998764
Q ss_pred CCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEE-eCCCeEEEEeCCCCCCccccCCCCC
Q 004468 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG-GSDAFARLYDRRMLPPLTSCQKRMS 259 (751)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sg-s~D~~IriwD~~~~~~~~~~~~~~~ 259 (751)
... .+.... .......+.|+|+ +++++++ ..++.|.++|..+.+.+..+...
T Consensus 331 ~~~------------~v~~i~------------~~~~~~d~~~~pd-gr~~~va~~~sn~V~ViD~~t~kl~~~i~vg-- 383 (567)
T 1qks_A 331 NNL------------KTTEIS------------AERFLHDGGLDGS-HRYFITAANARNKLVVIDTKEGKLVAIEDTG-- 383 (567)
T ss_dssp SEE------------EEEEEE------------CCSSEEEEEECTT-SCEEEEEEGGGTEEEEEETTTTEEEEEEECS--
T ss_pred ccc------------eeeeee------------ccccccCceECCC-CCEEEEEeCCCCeEEEEECCCCcEEEEEecc--
Confidence 311 011100 1124567889996 5666555 46789999999987643322110
Q ss_pred CCCccccccccccccCCccccceEEEEEcCCCCEEEEEe--CCCcEEEEECCCC
Q 004468 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLMDVNHA 311 (751)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s--~d~~I~lwdl~~~ 311 (751)
....|....+. + ++|++..+.+.+ .++.|.++|....
T Consensus 384 -------------g~~Phpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~~ 422 (567)
T 1qks_A 384 -------------GQTPHPGRGAN-F-VHPTFGPVWATSHMGDDSVALIGTDPE 422 (567)
T ss_dssp -------------SSSBCCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred -------------CcCCCCcccee-e-ECCCCCcEEEeCCCCCCeEEEecCCCC
Confidence 00112221233 2 688866555443 4689999999873
No 194
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.01 E-value=2e-08 Score=118.02 Aligned_cols=207 Identities=10% Similarity=0.057 Sum_probs=134.0
Q ss_pred EEEEEECCCCCEEEEEeCCCc----------------EEEEeCCCCeE--EEEe-cccCCcceEEEEEecCCCCcEEEEE
Q 004468 53 VNAISWNSKGSLLISGSDDTH----------------INVWSYSSRKL--LHSI-ETGHSANVFCTKFVPETSDELVVSG 113 (751)
Q Consensus 53 V~~l~~s~dg~~LaSgs~Dg~----------------I~IWd~~~~~~--~~~l-~~~h~~~V~~v~fsp~s~~~~l~sg 113 (751)
+..++|+|||+.|+.++.|+. |.+|++.++.. ...+ ...|...+..+.|+|+ |++|+.+
T Consensus 173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpD--g~~l~~~ 250 (710)
T 2xdw_A 173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDD--GRYVLLS 250 (710)
T ss_dssp SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT--SCEEEEE
T ss_pred cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCC--CCEEEEE
Confidence 667999999999999998876 99999987652 1222 1335667889999999 7888776
Q ss_pred EC-----CCcEEEEECCCCC----CCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC---CcEEEEecCCCC
Q 004468 114 AG-----DAEVRLFNLSRFS----GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED---GTLRQHDFRQGS 181 (751)
Q Consensus 114 s~-----Dg~V~vwd~~~~~----~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D---g~I~iwDlr~~~ 181 (751)
+. +..|++||+.... +. .....+..+...+.. .|+|++..+++.+..+ +.|.+||+.++.
T Consensus 251 ~~~~~~~~~~l~~~d~~~~~~~~~~~-------~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 322 (710)
T 2xdw_A 251 IREGCDPVNRLWYCDLQQESNGITGI-------LKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE 322 (710)
T ss_dssp EECSSSSCCEEEEEEGGGSSSSSCSS-------CCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred EEccCCCccEEEEEECcccccccCCc-------cceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 64 6789999997510 10 124556666666655 4788555555454433 368999987653
Q ss_pred CCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCe--EEEEeCCCCCCccccCCCCC
Q 004468 182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF--ARLYDRRMLPPLTSCQKRMS 259 (751)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~--IriwD~~~~~~~~~~~~~~~ 259 (751)
.. .. ..+.. ......+..++|++ ++.++++...|+. |++||+.+++.+..+
T Consensus 323 ~~--------~~-~~l~~------------~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l----- 375 (710)
T 2xdw_A 323 ES--------KW-KVLVP------------EHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATGALLKIF----- 375 (710)
T ss_dssp GG--------GC-EEEEC------------CCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTCCEEEEE-----
T ss_pred cc--------cc-eeccC------------CCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCCCEEEec-----
Confidence 10 00 11111 00113577888986 4678888888885 455666444322111
Q ss_pred CCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC----CCcEEEEECCCCC
Q 004468 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----GEHVYLMDVNHAG 312 (751)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~----d~~I~lwdl~~~~ 312 (751)
..+ ...+..++++|+++.|+.... .+.|++||+.++.
T Consensus 376 ---------------~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 376 ---------------PLE-VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ---------------CCC-SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ---------------CCC-CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 011 124888999999987765433 4799999998865
No 195
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.01 E-value=4.4e-08 Score=102.13 Aligned_cols=233 Identities=9% Similarity=0.075 Sum_probs=143.6
Q ss_pred ccCCCcEEEEEECCCCCEEEE-------EeCCCcEEEEeCCCCeEEEEec---ccCCcceEEEEEecCCCCcEEEEEECC
Q 004468 47 EGHQGCVNAISWNSKGSLLIS-------GSDDTHINVWSYSSRKLLHSIE---TGHSANVFCTKFVPETSDELVVSGAGD 116 (751)
Q Consensus 47 ~gH~~~V~~l~~s~dg~~LaS-------gs~Dg~I~IWd~~~~~~~~~l~---~~h~~~V~~v~fsp~s~~~~l~sgs~D 116 (751)
...-....+++|+++|+++++ +..++.|.+||..+++...... .++...+.++++.|+. +.++++ ...
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-g~l~v~-~~~ 91 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDA-NQLFVA-DMR 91 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSS-SEEEEE-ETT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCC-CcEEEE-ECC
Confidence 444456789999999998888 6778999999988776543321 1355779999999873 344444 444
Q ss_pred CcEEEEECCCCCCCCCCCCCCCCcee-ec----ccCCceeEEEEecCCCCEEEEEeCC---------------CcEEEEe
Q 004468 117 AEVRLFNLSRFSGRGLDDNAITPSAL-YQ----CHTRRVKKLAVEVGNPHVVWSASED---------------GTLRQHD 176 (751)
Q Consensus 117 g~V~vwd~~~~~~~~~~~~~~~~~~~-~~----~h~~~V~~l~~sp~~~~~l~s~s~D---------------g~I~iwD 176 (751)
..|.+||.. +.. ... .. .....+.++++.+ +++++++...+ +.|..||
T Consensus 92 ~~l~~~d~~-g~~----------~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (314)
T 1pjx_A 92 LGLLVVQTD-GTF----------EEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFT 159 (314)
T ss_dssp TEEEEEETT-SCE----------EECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred CCEEEEeCC-CCE----------EEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEEC
Confidence 578899987 321 111 11 1234588999999 56777776655 4566665
Q ss_pred cCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEe----CCCCcE-EEEEeCCCeEEEEeCC-CCCC
Q 004468 177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS----STRPHL-LLVGGSDAFARLYDRR-MLPP 250 (751)
Q Consensus 177 lr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~s----p~~~~~-l~sgs~D~~IriwD~~-~~~~ 250 (751)
.. ++. ..+.. .......++|+ |+ ++. +++...++.|.+||.. ..+.
T Consensus 160 ~~-g~~------------~~~~~--------------~~~~~~~i~~~~~~d~d-g~~l~v~~~~~~~i~~~~~~~~g~~ 211 (314)
T 1pjx_A 160 TD-GQM------------IQVDT--------------AFQFPNGIAVRHMNDGR-PYQLIVAETPTKKLWSYDIKGPAKI 211 (314)
T ss_dssp TT-SCE------------EEEEE--------------EESSEEEEEEEECTTSC-EEEEEEEETTTTEEEEEEEEETTEE
T ss_pred CC-CCE------------EEecc--------------CCCCcceEEEecccCCC-CCEEEEEECCCCeEEEEECCCCCcc
Confidence 43 220 01110 11235778999 85 544 4555578999999975 2210
Q ss_pred ccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeC
Q 004468 251 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT 330 (751)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~s 330 (751)
.. ...+. .+ .++....+..++++++|+.+++...++.|++||..++............+..++++
T Consensus 212 -~~----------~~~~~--~~--~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~ 276 (314)
T 1pjx_A 212 -EN----------KKVWG--HI--PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFK 276 (314)
T ss_dssp -EE----------EEEEE--EC--CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEEC
T ss_pred -cc----------ceEEE--EC--CCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEEC
Confidence 00 00000 00 01110137889999999988888889999999998654333333333556677787
Q ss_pred CCCCCc
Q 004468 331 PTLNGL 336 (751)
Q Consensus 331 p~~~~~ 336 (751)
|+.+.+
T Consensus 277 ~dg~~l 282 (314)
T 1pjx_A 277 PQTKTI 282 (314)
T ss_dssp TTSSEE
T ss_pred CCCCEE
Confidence 776533
No 196
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.99 E-value=1.1e-07 Score=101.68 Aligned_cols=254 Identities=10% Similarity=0.073 Sum_probs=153.3
Q ss_pred hccccccEEeccCCCcEEEEEECCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEecccC------CcceEEEE
Q 004468 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETGH------SANVFCTK 100 (751)
Q Consensus 37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs----------~Dg~I~IWd~~~~~~~~~l~~~h------~~~V~~v~ 100 (751)
..+++.+.++..-..+ . +.++|||++|..++ .++.|.+||..+++.+..+..+. ......+.
T Consensus 66 ~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a 143 (386)
T 3sjl_D 66 GEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTS 143 (386)
T ss_dssp TTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEE
T ss_pred CCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEE
Confidence 4456667777655555 4 99999999887765 36789999999999888874332 22466799
Q ss_pred EecCCCCcEEEEEEC--CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC
Q 004468 101 FVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (751)
Q Consensus 101 fsp~s~~~~l~sgs~--Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr 178 (751)
|+|+ |++++.+.. ++.|.|+|+.+. +.+.++.-. + +..+.|.+.+.|++.+.||++.+.++.
T Consensus 144 ~spD--Gk~lyVan~~~~~~VsVID~~t~----------~vv~tI~v~-g---~~~~~P~g~~~~~~~~~DG~~~~v~~~ 207 (386)
T 3sjl_D 144 LTPD--GKTLLFYQFSPAPAVGVVDLEGK----------AFKRMLDVP-D---CYHIFPTAPDTFFMHCRDGSLAKVAFG 207 (386)
T ss_dssp ECTT--SSEEEEEECSSSCEEEEEETTTT----------EEEEEEECC-S---EEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred EcCC--CCEEEEEEcCCCCeEEEEECCCC----------cEEEEEECC-C---cceeecCCCceeEEECCCCCEEEEECC
Confidence 9999 788877763 689999999974 334444321 1 112235456677788888888888887
Q ss_pred C-CCCC----CCCCCCC------C----ccceEEEecccCceecccCCCC--------------------CccceEEEEE
Q 004468 179 Q-GSSC----PPAGSSH------Q----ECRNILLDLRCGAKRSLADPPK--------------------QTLSLKSCDI 223 (751)
Q Consensus 179 ~-~~~~----~~~~~~~------~----~~~~~l~~~~~~~~~~~~~~~~--------------------~~~~v~~i~~ 223 (751)
. ++.. ....... . .....+|....+....+..... .......+++
T Consensus 208 ~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~ 287 (386)
T 3sjl_D 208 TEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY 287 (386)
T ss_dssp SSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEE
T ss_pred CCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeE
Confidence 6 3320 0110000 0 0011222211121111100000 0112334777
Q ss_pred eCCCCcEEEEEeC----------CCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCC-
Q 004468 224 SSTRPHLLLVGGS----------DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE- 292 (751)
Q Consensus 224 sp~~~~~l~sgs~----------D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~- 292 (751)
+|+. +.+.+... .+.|.++|+.+.+.+..+.. ...+.+|+|++|++
T Consensus 288 ~~~~-~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v----------------------g~~~~~lavs~D~~~ 344 (386)
T 3sjl_D 288 HRAL-DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM----------------------GHEIDSINVSQDEKP 344 (386)
T ss_dssp ETTT-TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----------------------EEEECEEEECSSSSC
T ss_pred CCCC-CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC----------------------CCCcceEEECCCCCe
Confidence 8864 44444332 25799999998775443310 11478999999997
Q ss_pred EEEEE-eCCCcEEEEECCCCCcceeeeecCCCceeEEeCCC
Q 004468 293 EVLLS-YSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (751)
Q Consensus 293 ~Ll~~-s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~ 332 (751)
+|+++ ..++.|.++|..+++ ..........+..+.++++
T Consensus 345 ~ly~tn~~~~~VsViD~~t~k-~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 345 LLYALSTGDKTLYIHDAESGE-ELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp EEEEEETTTTEEEEEETTTCC-EEEEECCCCSSCCEEEECC
T ss_pred EEEEEcCCCCeEEEEECCCCc-EEEEecCCCCCceeEECCc
Confidence 66664 458999999999965 3344444555666666665
No 197
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.96 E-value=1.1e-07 Score=103.73 Aligned_cols=216 Identities=8% Similarity=0.021 Sum_probs=138.8
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC--cEEEEECCCCC
Q 004468 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFS 128 (751)
Q Consensus 51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg--~V~vwd~~~~~ 128 (751)
.....|+|+++|+++++...++.|++||..++...... ... .... ++|+|+ ++.|+++..++ .|.+|+.....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~-~~~-~~~~-ia~~~~--g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH-PGF-KGGK-PAVTKD--KQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE-ETC-CBCB-CEECTT--SSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee-ccC-CCCc-eeEecC--CCcEEEEecCCCceEEEEEcCCCc
Confidence 46889999999998888888899999999887766554 332 2233 999999 78888887766 78888876421
Q ss_pred CCCCCCCCCCCceee----cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004468 129 GRGLDDNAITPSALY----QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (751)
Q Consensus 129 ~~~~~~~~~~~~~~~----~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (751)
....+ ......+.+++++|+++.+++ +..++.|+.||..++.. ..+.....
T Consensus 206 ----------~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~------------~~~~~~~~-- 260 (409)
T 3hrp_A 206 ----------APTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEV------------TLIKQLEL-- 260 (409)
T ss_dssp ----------CEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCE------------EEEEECCC--
T ss_pred ----------eeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCE------------EEEecccc--
Confidence 11222 214566789999996666665 66788999999876531 11110000
Q ss_pred eecccCCCCCccc--eEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccce
Q 004468 205 KRSLADPPKQTLS--LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (751)
Q Consensus 205 ~~~~~~~~~~~~~--v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v 282 (751)
...... ...++|+|+++.++++-..++.|+.|+.... +..+........ +... ...... -...
T Consensus 261 -------~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g----~~dg-~~~~~~-~~~P 325 (409)
T 3hrp_A 261 -------SGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKT----VQDG-LREEAL-FAQP 325 (409)
T ss_dssp -------CSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCS----CBCE-EGGGCB-CSSE
T ss_pred -------cCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCC----cCCC-cccccE-eCCC
Confidence 001111 1289999976777888788899999987532 111100000000 0000 000000 1137
Q ss_pred EEEEEcCCCCEEEEEe-CCCcEEEEECCCC
Q 004468 283 THVTFSPNGEEVLLSY-SGEHVYLMDVNHA 311 (751)
Q Consensus 283 t~v~fspdg~~Ll~~s-~d~~I~lwdl~~~ 311 (751)
..++|+|+|+.+++-+ .++.|+.|++.++
T Consensus 326 ~gia~d~dG~lyvad~~~~~~I~~~~~~~G 355 (409)
T 3hrp_A 326 NGMTVDEDGNFYIVDGFKGYCLRKLDILDG 355 (409)
T ss_dssp EEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred eEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence 8999999999878877 8999999998764
No 198
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.96 E-value=2.6e-08 Score=105.57 Aligned_cols=181 Identities=8% Similarity=0.014 Sum_probs=115.7
Q ss_pred EEEEEECCCCCEEEEEeCC---------------------------CcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004468 53 VNAISWNSKGSLLISGSDD---------------------------THINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (751)
Q Consensus 53 V~~l~~s~dg~~LaSgs~D---------------------------g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s 105 (751)
|..+.|+|||+.|+.++.+ ..|.+||+.+++.+..+ .. . .+..+.|+|+
T Consensus 106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l-~~-~-~~~~~~~spd- 181 (347)
T 2gop_A 106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEF-EK-P-RFSSGIWHRD- 181 (347)
T ss_dssp EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEE-EE-E-TTCEEEEETT-
T ss_pred ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeee-cC-C-CcccccCCCC-
Confidence 9999999999999988742 57999999988774555 33 3 7899999999
Q ss_pred CCcEEEEEECCC-------cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC--------C
Q 004468 106 SDELVVSGAGDA-------EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED--------G 170 (751)
Q Consensus 106 ~~~~l~sgs~Dg-------~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D--------g 170 (751)
+ +++++..+. ...||.+..+ + ...+..+ ..+..+ +| +++.|+.++.+ .
T Consensus 182 -g-~~~~~~~~~~~~~~~~~~~l~~~d~~----------~-~~~l~~~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~ 244 (347)
T 2gop_A 182 -K-IVVNVPHREIIPQYFKFWDIYIWEDG----------K-EEKMFEK-VSFYAV--DS-DGERILLYGKPEKKYMSEHN 244 (347)
T ss_dssp -E-EEEEEECCCSSCCSSCCEEEEEEETT----------E-EEEEEEE-ESEEEE--EE-CSSCEEEEECCSSSCCCSSC
T ss_pred -e-EEEEEecccccccccccccEEEeCCC----------c-eEEeccC-cceeeE--CC-CCCEEEEEEccccCCccccc
Confidence 7 777776652 4455555421 1 2333334 445444 88 55555555543 3
Q ss_pred cEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEE-EEEeCCCCcEEEEEeCCCeEEEEeCCCCC
Q 004468 171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS-CDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (751)
Q Consensus 171 ~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~-i~~sp~~~~~l~sgs~D~~IriwD~~~~~ 249 (751)
.|.+|| +++.. .+ ...+...+.. +.|+ + + ++++++.++.++|| +..++
T Consensus 245 ~l~~~d--~~~~~-----------------------~l--~~~~~~~~~~~~~~s-d-g-~~~~~~~~~~~~l~-~~~g~ 293 (347)
T 2gop_A 245 KLYIYD--GKEVM-----------------------GI--LDEVDRGVGQAKIKD-G-K-VYFTLFEEGSVNLY-IWDGE 293 (347)
T ss_dssp EEEEEC--SSCEE-----------------------ES--STTCCSEEEEEEEET-T-E-EEEEEEETTEEEEE-EESSS
T ss_pred eEEEEC--CCceE-----------------------ec--cccCCcccCCccEEc-C-c-EEEEEecCCcEEEE-EcCCc
Confidence 577777 32210 01 1123445665 8898 4 5 88999999999999 86322
Q ss_pred CccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcE-EEEECC
Q 004468 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHV-YLMDVN 309 (751)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I-~lwdl~ 309 (751)
. .... .+ ...|.+++|+| ..+++++.++.. .||.++
T Consensus 294 ~--------------~~~~-------~~-~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 294 I--------------KPIA-------KG-RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp E--------------EEEE-------CS-SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred e--------------EEEe-------cC-CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 1 0110 01 12489999999 677777766554 666665
No 199
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.94 E-value=3e-07 Score=94.73 Aligned_cols=201 Identities=6% Similarity=-0.008 Sum_probs=137.7
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCC
Q 004468 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (751)
Q Consensus 48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~ 127 (751)
.+...+.+|+++++|.++++...++.|..||.. ++............+.++++.|+ +.++++...++.|.+||.. +
T Consensus 54 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~d~~-g 129 (299)
T 2z2n_A 54 TPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPN--GDIWFTEMNGNRIGRITDD-G 129 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT--SCEEEEETTTTEEEEECTT-C
T ss_pred cccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCC--CCEEEEecCCceEEEECCC-C
Confidence 355789999999999999888878899999986 43322111235567999999998 7888887778899999983 2
Q ss_pred CCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceec
Q 004468 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (751)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (751)
.. .......+...+..+++.+ ++.++++...++.|..||. +++.. .+..
T Consensus 130 ~~---------~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~-------------~~~~------- 178 (299)
T 2z2n_A 130 KI---------REYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDIT-------------EFKI------- 178 (299)
T ss_dssp CE---------EEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEE-------------EEEC-------
T ss_pred CE---------EEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEE-------------EeeC-------
Confidence 10 0112223456789999998 5677777777789999998 54311 0100
Q ss_pred ccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEE
Q 004468 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (751)
Q Consensus 208 ~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~f 287 (751)
+.....+.++++.++ ++++++...++.|.+||. +.+.. .+ ..+ .. ...+.++++
T Consensus 179 ----~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~-~g~~~-~~------------~~~------~~-~~~~~~i~~ 232 (299)
T 2z2n_A 179 ----PTPASGPVGITKGND-DALWFVEIIGNKIGRITT-SGEIT-EF------------KIP------TP-NARPHAITA 232 (299)
T ss_dssp ----SSTTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEE-EE------------ECS------ST-TCCEEEEEE
T ss_pred ----CCCCCcceeEEECCC-CCEEEEccCCceEEEECC-CCcEE-EE------------ECC------CC-CCCceeEEE
Confidence 112345778999995 677777667889999998 44311 00 000 01 114889999
Q ss_pred cCCCCEEEEEeCCCcEEEEECC
Q 004468 288 SPNGEEVLLSYSGEHVYLMDVN 309 (751)
Q Consensus 288 spdg~~Ll~~s~d~~I~lwdl~ 309 (751)
+++|+.+++...++.|.+||..
T Consensus 233 ~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 233 GAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp CSTTCEEEEETTTTEEEEEETT
T ss_pred CCCCCEEEeccCCceEEEECCC
Confidence 9999966666678999999983
No 200
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.93 E-value=7.7e-08 Score=109.19 Aligned_cols=205 Identities=12% Similarity=0.056 Sum_probs=138.6
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCC
Q 004468 60 SKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP 139 (751)
Q Consensus 60 ~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~ 139 (751)
+.+.++++...+++|.++|..+++.+..+..+ ..+..+.|+|+ ++++++++.|+.|.+||+...+. +.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g--~~p~~v~~SpD--Gr~lyv~~~dg~V~viD~~~~t~--------~~ 232 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSAS--GRYLFVIGRDGKVNMIDLWMKEP--------TT 232 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECTT--SCEEEEEETTSEEEEEETTSSSC--------CE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC--CCccceEECCC--CCEEEEEcCCCeEEEEECCCCCC--------cE
Confidence 44567788889999999999999999888433 35779999999 89999999999999999951111 33
Q ss_pred ceeecccCCceeEEEEe----cCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCC-
Q 004468 140 SALYQCHTRRVKKLAVE----VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ- 214 (751)
Q Consensus 140 ~~~~~~h~~~V~~l~~s----p~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~- 214 (751)
+..+... .....++|+ |++..++++.-.+++|.++|..+.+... . +.. +... ......+
T Consensus 233 v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~-----------~-i~~--~~~~-~~~~~~~p 296 (567)
T 1qks_A 233 VAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK-----------I-QST--RGMT-YDEQEYHP 296 (567)
T ss_dssp EEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE-----------E-EEC--CEEC-TTTCCEES
T ss_pred eEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEE-----------E-Eec--cccc-cccccccC
Confidence 4455432 346789999 6554455555667999999987765321 0 110 0000 0000001
Q ss_pred ccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEE
Q 004468 215 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV 294 (751)
Q Consensus 215 ~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~L 294 (751)
...+..+.++++++.+++....+|.|.++|....+.+. +... . . ......+.|+|+|++|
T Consensus 297 ~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~-----------v~~i-----~-~---~~~~~d~~~~pdgr~~ 356 (567)
T 1qks_A 297 EPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK-----------TTEI-----S-A---ERFLHDGGLDGSHRYF 356 (567)
T ss_dssp CCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE-----------EEEE-----E-C---CSSEEEEEECTTSCEE
T ss_pred CCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce-----------eeee-----e-c---cccccCceECCCCCEE
Confidence 12567788888767777777788999999987543111 0000 0 0 1136688999999998
Q ss_pred EEEe-CCCcEEEEECCCCC
Q 004468 295 LLSY-SGEHVYLMDVNHAG 312 (751)
Q Consensus 295 l~~s-~d~~I~lwdl~~~~ 312 (751)
+++. .++.|.++|+.+++
T Consensus 357 ~va~~~sn~V~ViD~~t~k 375 (567)
T 1qks_A 357 ITAANARNKLVVIDTKEGK 375 (567)
T ss_dssp EEEEGGGTEEEEEETTTTE
T ss_pred EEEeCCCCeEEEEECCCCc
Confidence 8766 57899999999864
No 201
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.92 E-value=1.8e-08 Score=118.06 Aligned_cols=200 Identities=11% Similarity=0.054 Sum_probs=131.5
Q ss_pred EEEEECCCCCEEEEEeCCCc-------------EEEEeCCCCe----EEEEecccCCcceEEEEEecCCCCcEEEEEECC
Q 004468 54 NAISWNSKGSLLISGSDDTH-------------INVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (751)
Q Consensus 54 ~~l~~s~dg~~LaSgs~Dg~-------------I~IWd~~~~~----~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D 116 (751)
..++|+|||+.|+.++.|.. |++|++.++. ++... ..|...+.++.|+|+ |++|+.++.+
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~-~~~~~~~~~~~~SpD--G~~l~~~~~~ 247 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER-TGDPTTFLQSDLSRD--GKYLFVYILR 247 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC-CCCTTCEEEEEECTT--SCCEEEEEEE
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec-CCCCEEEEEEEECCC--CCEEEEEEeC
Confidence 67999999999999999877 9999998775 33333 456678999999999 7888777666
Q ss_pred C----cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe---CCCcEEEEecCCCCCCCCCCCC
Q 004468 117 A----EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS---EDGTLRQHDFRQGSSCPPAGSS 189 (751)
Q Consensus 117 g----~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s---~Dg~I~iwDlr~~~~~~~~~~~ 189 (751)
+ .|.+|+... .....+..+...+....+ +++. +++++. .++.|.+||+.++...
T Consensus 248 ~~~~~~l~~~~~~~-----------~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~------ 308 (695)
T 2bkl_A 248 GWSENDVYWKRPGE-----------KDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARA------ 308 (695)
T ss_dssp TTTEEEEEEECTTC-----------SSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGG------
T ss_pred CCCceEEEEEcCCC-----------CceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCcc------
Confidence 5 566665432 124455556666667767 5455 665554 3588999998765310
Q ss_pred CCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC-CCCccccCCCCCCCCcccccc
Q 004468 190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFC 268 (751)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~-~~~~~~~~~~~~~~~~~~~~~ 268 (751)
.. ..++. ......+..++|+ ++.++++...|+..+||.+.. +... +.+
T Consensus 309 --~~-~~l~~------------~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~-------------~~l- 357 (695)
T 2bkl_A 309 --SW-KEIVP------------EDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKPV-------------RTV- 357 (695)
T ss_dssp --GC-EEEEC------------CCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCEE-------------EEC-
T ss_pred --CC-eEEec------------CCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCee-------------EEe-
Confidence 00 11110 0113456778887 467899999999998886642 2111 111
Q ss_pred ccccccCCccccceEEEEEcCCCCEEEEEeC----CCcEEEEECCCCC
Q 004468 269 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----GEHVYLMDVNHAG 312 (751)
Q Consensus 269 ~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~----d~~I~lwdl~~~~ 312 (751)
..+....+..++++|+++.|+.... .+.|++||+.++.
T Consensus 358 ------~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 358 ------QLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp ------CCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred ------cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 0011123677889999987775443 4789999998865
No 202
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.92 E-value=1.6e-08 Score=118.57 Aligned_cols=208 Identities=15% Similarity=0.109 Sum_probs=127.8
Q ss_pred ccCCCcEEEEEECCCCCEEEE-----EeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCc---
Q 004468 47 EGHQGCVNAISWNSKGSLLIS-----GSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE--- 118 (751)
Q Consensus 47 ~gH~~~V~~l~~s~dg~~LaS-----gs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~--- 118 (751)
++|...|..++|||||++||- |+.+.+|+|||+.+++.+..... ......++|+ + ++.|+.++.+..
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~--~~k~~~~~Ws-D--g~~l~y~~~~~~~~~ 199 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK--DVKFSGISWL-G--NEGFFYSSYDKPDGS 199 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE--EEESCCCEEE-T--TTEEEEEESSCCC--
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccC--CceeccEEEe-C--CCEEEEEEecCcccc
Confidence 346667899999999999983 44456799999999886543211 1113578899 8 788888877743
Q ss_pred ----------EEEEECCCCCCCCCCCCCCCCceeecc-cCCceeEEEEecCCCCEEEEEeCC---CcEEEEecCCCCCCC
Q 004468 119 ----------VRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASED---GTLRQHDFRQGSSCP 184 (751)
Q Consensus 119 ----------V~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~D---g~I~iwDlr~~~~~~ 184 (751)
|++|++.+..... .++..... |...+..+.|+|++..++++.+.+ ..|+++|+.++...
T Consensus 200 ~~~~~~~~~~v~~~~lgt~~~~~------~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~- 272 (693)
T 3iuj_A 200 ELSARTDQHKVYFHRLGTAQEDD------RLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP- 272 (693)
T ss_dssp -----CCCCEEEEEETTSCGGGC------EEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC-
T ss_pred cccccCCCcEEEEEECCCCcccc------eEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc-
Confidence 9999998653211 12233333 555678899999554455555433 47899998775311
Q ss_pred CCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC---CeEEEEeCCCCCCccccCCCCCCC
Q 004468 185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPP 261 (751)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D---~~IriwD~~~~~~~~~~~~~~~~~ 261 (751)
...+.. +....... ++++++.+++++..+ +.|..+|+.+....
T Consensus 273 ---------~~~l~~--------------~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~---------- 318 (693)
T 3iuj_A 273 ---------LLTVQG--------------DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA---------- 318 (693)
T ss_dssp ---------CEEEEC--------------SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG----------
T ss_pred ---------eEEEeC--------------CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc----------
Confidence 011110 11122222 556455555555544 67889998764320
Q ss_pred CccccccccccccCCccccceEEEEEcCCCCEEEEEeCCC---cEEEEECCCC
Q 004468 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNHA 311 (751)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~---~I~lwdl~~~ 311 (751)
..+.+.+ +.. .+. .|++++++|+....++ .|++||+.++
T Consensus 319 -~~~~l~~-------~~~-~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 319 -HWRDLIP-------ERQ-QVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp -GCEEEEC-------CCS-SCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred -ccEEEec-------CCC-CEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 0111211 111 133 8999999988877644 7999998864
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.90 E-value=1.1e-07 Score=99.15 Aligned_cols=206 Identities=11% Similarity=0.113 Sum_probs=132.6
Q ss_pred cCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeEEEE-ecc--c-CCcceEEEEEecCCCCcEEEEEECC------
Q 004468 48 GHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHS-IET--G-HSANVFCTKFVPETSDELVVSGAGD------ 116 (751)
Q Consensus 48 gH~~~V~~l~~s~d-g~~LaSgs~Dg~I~IWd~~~~~~~~~-l~~--~-h~~~V~~v~fsp~s~~~~l~sgs~D------ 116 (751)
++...+.++.++++ |+++++... ..|.+||.. ++.... ... + ....+.++++.|+ |.++++...+
T Consensus 68 ~~~~~~~~i~~~~~~g~l~v~~~~-~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~~~~~ 143 (314)
T 1pjx_A 68 GYGGIPAGCQCDRDANQLFVADMR-LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPAD 143 (314)
T ss_dssp TEECCEEEEEECSSSSEEEEEETT-TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSC
T ss_pred CCCCCCceEEEecCCCcEEEEECC-CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCC--CCEEEEecCccccccc
Confidence 36678999999999 776666554 479999988 665433 211 1 2245889999998 7888877655
Q ss_pred ---------CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEe----cCCCCEEEEEeCCCcEEEEecC-CCCC
Q 004468 117 ---------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE----VGNPHVVWSASEDGTLRQHDFR-QGSS 182 (751)
Q Consensus 117 ---------g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s----p~~~~~l~s~s~Dg~I~iwDlr-~~~~ 182 (751)
+.|..||.. + + ...+..+......++|+ |++..++++...++.|.+||+. .++.
T Consensus 144 ~~~~~~~~~~~l~~~~~~-g----------~-~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~ 211 (314)
T 1pjx_A 144 YTRSMQEKFGSIYCFTTD-G----------Q-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI 211 (314)
T ss_dssp CCBTTSSSCEEEEEECTT-S----------C-EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE
T ss_pred ccccccCCCCeEEEECCC-C----------C-EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc
Confidence 456666554 1 1 22223344557889999 8443455666678999999976 2210
Q ss_pred CCCCCCCCCccceEEEecccCceecccCCCCCc-cceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCC
Q 004468 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQT-LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 261 (751)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~ 261 (751)
.....+.. .+.+. ..+..++++++ ++++++...++.|.+||..+++.+..+.
T Consensus 212 ---------~~~~~~~~-----------~~~~~~~~p~~i~~d~~-G~l~v~~~~~~~i~~~d~~~g~~~~~~~------ 264 (314)
T 1pjx_A 212 ---------ENKKVWGH-----------IPGTHEGGADGMDFDED-NNLLVANWGSSHIEVFGPDGGQPKMRIR------ 264 (314)
T ss_dssp ---------EEEEEEEE-----------CCCCSSCEEEEEEEBTT-CCEEEEEETTTEEEEECTTCBSCSEEEE------
T ss_pred ---------ccceEEEE-----------CCCCCCCCCCceEECCC-CCEEEEEcCCCEEEEEcCCCCcEeEEEe------
Confidence 00011111 11122 35678999994 6888887788999999987544322110
Q ss_pred CccccccccccccCCccccceEEEEEcCCCCEEEEEe-CCCcEEEEECCCC
Q 004468 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHA 311 (751)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s-~d~~I~lwdl~~~ 311 (751)
.+. ..+++++|+|+|++|++++ .++.|..|++...
T Consensus 265 --------------~~~-~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 265 --------------CPF-EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp --------------CSS-SCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred --------------CCC-CCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 011 1489999999999666554 5689999998763
No 204
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.87 E-value=6.4e-07 Score=93.06 Aligned_cols=238 Identities=12% Similarity=0.068 Sum_probs=144.9
Q ss_pred EEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004468 44 RELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (751)
Q Consensus 44 ~~L~gH~~~V~~l~~s~d-g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw 122 (751)
..+..+..-..+..|+++ +.++++...++.|..||..++... .+ .....+.++++.|+ ++++++. ++.|.+|
T Consensus 6 ~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~--~~~~~~~~i~~~~d--G~l~v~~--~~~l~~~ 78 (297)
T 3g4e_A 6 CVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV--TMDAPVSSVALRQS--GGYVATI--GTKFCAL 78 (297)
T ss_dssp EEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE--ECSSCEEEEEEBTT--SSEEEEE--TTEEEEE
T ss_pred EEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE--eCCCceEEEEECCC--CCEEEEE--CCeEEEE
Confidence 344555556678999995 557777778899999999877653 33 24567999999999 7765553 5789999
Q ss_pred ECCCCCCCCCCCCCCCCceeec--ccCCceeEEEEecCCCCEEEEEeCC---------CcEEEEecCCCCCCCCCCCCCC
Q 004468 123 NLSRFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASED---------GTLRQHDFRQGSSCPPAGSSHQ 191 (751)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~l~s~s~D---------g~I~iwDlr~~~~~~~~~~~~~ 191 (751)
|..++.. ..+.... .....++.+++.| +++++++...+ ....+|.+......
T Consensus 79 d~~~g~~--------~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-------- 141 (297)
T 3g4e_A 79 NWKEQSA--------VVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-------- 141 (297)
T ss_dssp ETTTTEE--------EEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE--------
T ss_pred ECCCCcE--------EEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCE--------
Confidence 9875321 1111111 1234578899999 56666554322 22344444321100
Q ss_pred ccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCC--CCCCccccCCCCCCCCccccccc
Q 004468 192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR--MLPPLTSCQKRMSPPPCVNYFCP 269 (751)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~--~~~~~~~~~~~~~~~~~~~~~~~ 269 (751)
..+.. .....+.++|+|++..++++.+.++.|.+||+. ++.... .+.+..
T Consensus 142 ---~~~~~--------------~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~-----------~~~~~~ 193 (297)
T 3g4e_A 142 ---KKYFD--------------QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISN-----------RRSVYK 193 (297)
T ss_dssp ---EEEEE--------------EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEE-----------EEEEEE
T ss_pred ---EEEee--------------ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccC-----------cEEEEE
Confidence 01110 123457899999643455666678899999873 332100 000100
Q ss_pred cccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeC-CCCCCccc
Q 004468 270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT-PTLNGLEL 338 (751)
Q Consensus 270 ~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~s-p~~~~~~~ 338 (751)
+. .....+..++++++|+..++...++.|.+||..+++...........+..++|. |+.+.+.+
T Consensus 194 --~~---~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~v 258 (297)
T 3g4e_A 194 --LE---KEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYV 258 (297)
T ss_dssp --CC---GGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEE
T ss_pred --CC---CCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEE
Confidence 00 001247889999999887777788899999998766444444444567778887 66555443
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.87 E-value=9.7e-07 Score=90.88 Aligned_cols=202 Identities=7% Similarity=-0.022 Sum_probs=137.3
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCC
Q 004468 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (751)
Q Consensus 47 ~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~ 126 (751)
..+...+.+|++.++|+++++...++.|.+||.. ++............+.++++.++ +.++++...++.|..+|..
T Consensus 58 ~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~~- 133 (300)
T 2qc5_A 58 PTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLN--GDIWFTQLNGDRIGKLTAD- 133 (300)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECST--TCEEEEETTTTEEEEECTT-
T ss_pred CCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCC--CCEEEEccCCCeEEEECCC-
Confidence 3445689999999999988888778899999988 55432221334567999999988 7888887778899999886
Q ss_pred CCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCcee
Q 004468 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (751)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (751)
+.. ....+......+..+++.+ +++++++...++.|..||. +++.. .+.
T Consensus 134 g~~---------~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~-------------~~~------- 182 (300)
T 2qc5_A 134 GTI---------YEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRITN-TGKLE-------------EYP------- 182 (300)
T ss_dssp SCE---------EEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEE-------------EEE-------
T ss_pred CCE---------EEccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEECC-CCcEE-------------Eee-------
Confidence 211 0111223456788999998 5677767666789999987 43210 011
Q ss_pred cccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEE
Q 004468 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (751)
Q Consensus 207 ~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~ 286 (751)
.+.....+..+++.++ ++++++....+.|.+||. ...... ...+. . ...+.+++
T Consensus 183 ----~~~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~-~g~~~~-------------~~~~~------~-~~~~~~i~ 236 (300)
T 2qc5_A 183 ----LPTNAAAPVGITSGND-GALWFVEIMGNKIGRITT-TGEISE-------------YDIPT------P-NARPHAIT 236 (300)
T ss_dssp ----CSSTTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEEE-------------EECSS------T-TCCEEEEE
T ss_pred ----CCCCCCCcceEEECCC-CCEEEEccCCCEEEEEcC-CCcEEE-------------EECCC------C-CCCceEEE
Confidence 0112345788999994 677777667788999997 322110 00010 1 11478999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECC
Q 004468 287 FSPNGEEVLLSYSGEHVYLMDVN 309 (751)
Q Consensus 287 fspdg~~Ll~~s~d~~I~lwdl~ 309 (751)
++++|+..++...++.|..||..
T Consensus 237 ~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 237 AGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp ECSTTCEEEEETTTTEEEEECTT
T ss_pred ECCCCCEEEeccCCCeEEEECCC
Confidence 99999966666677999999984
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.86 E-value=8.5e-07 Score=91.30 Aligned_cols=202 Identities=10% Similarity=0.053 Sum_probs=138.4
Q ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECC
Q 004468 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (751)
Q Consensus 46 L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~ 125 (751)
+......+.+|.+.++|+++++...++.|.+||.. ++........+...+.++++.++ +.++++...++.|.+||..
T Consensus 15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~v~~~d~~ 91 (300)
T 2qc5_A 15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSL--GDIWFTENGANKIGKLSKK 91 (300)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT--SCEEEEETTTTEEEEECTT
T ss_pred cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCC--CCEEEEecCCCeEEEECCC
Confidence 34456788999999999998888888999999988 55443222334567999999988 7888877778899999987
Q ss_pred CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004468 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (751)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (751)
+.. ....+......+..+++.+ ++.++++...++.|..||.. ++. ..+..
T Consensus 92 -g~~---------~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~-------------~~~~~----- 141 (300)
T 2qc5_A 92 -GGF---------TEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTI-------------YEYDL----- 141 (300)
T ss_dssp -SCE---------EEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCE-------------EEEEC-----
T ss_pred -CCe---------EEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCE-------------EEccC-----
Confidence 211 0112222346788999998 66777777778899999876 331 01110
Q ss_pred ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEE
Q 004468 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (751)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v 285 (751)
+.....+..+++.++ ++++++...++.|..||. ..+... + ..+. . ...+..+
T Consensus 142 ------~~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~-~g~~~~-~------------~~~~------~-~~~~~~i 193 (300)
T 2qc5_A 142 ------PNKGSYPAFITLGSD-NALWFTENQNNSIGRITN-TGKLEE-Y------------PLPT------N-AAAPVGI 193 (300)
T ss_dssp ------SSTTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEEE-E------------ECSS------T-TCCEEEE
T ss_pred ------CCCCCCceeEEECCC-CCEEEEecCCCeEEEECC-CCcEEE-e------------eCCC------C-CCCcceE
Confidence 112345788999995 676666666789999987 332110 0 0000 1 1147899
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEC
Q 004468 286 TFSPNGEEVLLSYSGEHVYLMDV 308 (751)
Q Consensus 286 ~fspdg~~Ll~~s~d~~I~lwdl 308 (751)
+++++|+..++....+.|.+||.
T Consensus 194 ~~d~~g~l~v~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 194 TSGNDGALWFVEIMGNKIGRITT 216 (300)
T ss_dssp EECTTSSEEEEETTTTEEEEECT
T ss_pred EECCCCCEEEEccCCCEEEEEcC
Confidence 99999987777767788999998
No 207
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.86 E-value=2.6e-07 Score=100.49 Aligned_cols=240 Identities=11% Similarity=0.079 Sum_probs=144.0
Q ss_pred hccccccEEeccCCCcEEEEEECCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeccc------CCcceEEEE
Q 004468 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETG------HSANVFCTK 100 (751)
Q Consensus 37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs----------~Dg~I~IWd~~~~~~~~~l~~~------h~~~V~~v~ 100 (751)
..+++.+.++..-..+ .+.++|||++|..+. .++.|.++|..+++.+..+..+ .......+.
T Consensus 106 ~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~ 183 (426)
T 3c75_H 106 GSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNA 183 (426)
T ss_dssp TTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSE
T ss_pred CCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEE
Confidence 4556667777654455 899999999887775 4678999999999988887433 123456789
Q ss_pred EecCCCCcEEEEEEC--CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC
Q 004468 101 FVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (751)
Q Consensus 101 fsp~s~~~~l~sgs~--Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr 178 (751)
|+|+ |++++.+.. ++.|.+.|+.+. +.+..+.-- + +....|++...+++.+.||++.+.++.
T Consensus 184 ~spD--Gk~lyV~n~~~~~~VsVID~~t~----------kvv~~I~v~-g---~~~~~p~g~~~~v~~~~dG~~~~V~~~ 247 (426)
T 3c75_H 184 LTPD--NKNLLFYQFSPAPAVGVVDLEGK----------TFDRMLDVP-D---CYHIFPASPTVFYMNCRDGSLARVDFA 247 (426)
T ss_dssp ECTT--SSEEEEEECSSSCEEEEEETTTT----------EEEEEEECC-S---EEEEEEEETTEEEEEETTSSEEEEECC
T ss_pred EcCC--CCEEEEEecCCCCeEEEEECCCC----------eEEEEEEcC-C---ceeeccCCCcEEEEEcCCCCEEEEECC
Confidence 9999 788887764 588999999864 223333321 1 123344444666677777777777774
Q ss_pred CCCCCC----CCCCC----------CCc----------cceEEEecccCceecccCC-----CC-----CccceEEEEEe
Q 004468 179 QGSSCP----PAGSS----------HQE----------CRNILLDLRCGAKRSLADP-----PK-----QTLSLKSCDIS 224 (751)
Q Consensus 179 ~~~~~~----~~~~~----------~~~----------~~~~l~~~~~~~~~~~~~~-----~~-----~~~~v~~i~~s 224 (751)
+++... ..... ... ....+++...+....+... .. .......++++
T Consensus 248 ~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s 327 (426)
T 3c75_H 248 DGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYH 327 (426)
T ss_dssp TTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEE
T ss_pred CCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEc
Confidence 433210 00000 000 1112222222111100000 00 01112236899
Q ss_pred CCCCcEEEEEe---------CCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCC-EE
Q 004468 225 STRPHLLLVGG---------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EV 294 (751)
Q Consensus 225 p~~~~~l~sgs---------~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~-~L 294 (751)
|++.+++++.. .++.|.++|..+.+.+..+.. ......++|+|||+ +|
T Consensus 328 ~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v----------------------g~~P~gia~spDg~~~l 385 (426)
T 3c75_H 328 RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL----------------------GHEIDSINVSQDAEPLL 385 (426)
T ss_dssp GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----------------------EEEECEEEECCSSSCEE
T ss_pred CCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC----------------------CCCcCeEEEccCCCEEE
Confidence 96444444433 135799999998876544311 01367899999999 88
Q ss_pred EEEe-CCCcEEEEECCCCCccee
Q 004468 295 LLSY-SGEHVYLMDVNHAGGRAM 316 (751)
Q Consensus 295 l~~s-~d~~I~lwdl~~~~~~~~ 316 (751)
++.. .++.|.++|+.+.+....
T Consensus 386 yv~n~~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 386 YALSAGTQTLHIYDAATGEELRS 408 (426)
T ss_dssp EEEETTTTEEEEEETTTCCEEEE
T ss_pred EEEcCCCCeEEEEECCCCCEEEE
Confidence 8877 599999999999764433
No 208
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.84 E-value=1.2e-07 Score=111.91 Aligned_cols=234 Identities=12% Similarity=0.014 Sum_probs=132.2
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCC-----CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCc----
Q 004468 48 GHQGCVNAISWNSKGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE---- 118 (751)
Q Consensus 48 gH~~~V~~l~~s~dg~~LaSgs~D-----g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~---- 118 (751)
+|...+..++|||||++||.++.+ ..|+|||+.+++.+... .+...+..++|+|+ +.|+.++.|+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~--~~~~~~~~~~wspD---~~l~~~~~~~~~~~~ 234 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE--LKWVKFSGLAWLGN---DALLYSRFAEPKEGQ 234 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE--EEEEESCCCEESTT---SEEEEEECCCC----
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc--CCCceeccEEEECC---CEEEEEEecCccccc
Confidence 344578899999999999987654 46999999998875432 12223467899998 45555555543
Q ss_pred ----------EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC-----cEEEEecCCCCCC
Q 004468 119 ----------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-----TLRQHDFRQGSSC 183 (751)
Q Consensus 119 ----------V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg-----~I~iwDlr~~~~~ 183 (751)
|++|++.+..... ..+.....+...+..+.|+| +++.|+..+.++ .|++||+.++...
T Consensus 235 ~~~~~~~~~~v~~~~lgt~~~~~------~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 307 (741)
T 1yr2_A 235 AFQALNYNQTVWLHRLGTPQSAD------QPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIG 307 (741)
T ss_dssp ----CCCCCEEEEEETTSCGGGC------EEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEEC
T ss_pred ccccCCCCCEEEEEECCCCchhC------EEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCc
Confidence 8899987542110 11222233444688999999 556666665443 7899998765200
Q ss_pred CCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeC----CCeEEEEeCCCCCCccccCCCCC
Q 004468 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS----DAFARLYDRRMLPPLTSCQKRMS 259 (751)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~----D~~IriwD~~~~~~~~~~~~~~~ 259 (751)
+...+.. +...+... ++|+ +..|+..+. ++.|.+||+.... .
T Consensus 308 ---------~~~~l~~--------------~~~~~~~~-~~~d-g~~l~~~s~~~~~~~~l~~~d~~~~~--~------- 353 (741)
T 1yr2_A 308 ---------PVTALIP--------------DLKAQWDF-VDGV-GDQLWFVSGDGAPLKKIVRVDLSGST--P------- 353 (741)
T ss_dssp ---------CCEEEEC--------------SSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEECSSSS--C-------
T ss_pred ---------ccEEecC--------------CCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCc--c-------
Confidence 0011111 11112222 3464 566666665 3459999987531 0
Q ss_pred CCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECC-CCCcceeeee-cCCCceeEEeCCCCCCcc
Q 004468 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN-HAGGRAMRYT-VGDASKIMSFTPTLNGLE 337 (751)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~-~~~~~~~~~~-~~~~~~~~~~sp~~~~~~ 337 (751)
..+.+.+. +.. .+..++|+ ++..+++...++..+||.++ +++....... ....+..+.++|+.+.+.
T Consensus 354 ---~~~~l~~~------~~~-~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~ 422 (741)
T 1yr2_A 354 ---RFDTVVPE------SKD-NLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAY 422 (741)
T ss_dssp ---EEEEEECC------CSS-EEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEE
T ss_pred ---ccEEEecC------CCC-eEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEE
Confidence 01111111 111 36677887 55666777778877766554 2232221111 233445667777666555
Q ss_pred c
Q 004468 338 L 338 (751)
Q Consensus 338 ~ 338 (751)
+
T Consensus 423 ~ 423 (741)
T 1yr2_A 423 L 423 (741)
T ss_dssp E
T ss_pred E
Confidence 3
No 209
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.79 E-value=5.4e-07 Score=93.58 Aligned_cols=195 Identities=12% Similarity=0.081 Sum_probs=126.6
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc--c-CCcceEEEEEecCCCCcEEEEEECC---------
Q 004468 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET--G-HSANVFCTKFVPETSDELVVSGAGD--------- 116 (751)
Q Consensus 49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~--~-h~~~V~~v~fsp~s~~~~l~sgs~D--------- 116 (751)
+...|.+++|+++|+++++. +..|.+||..+++....... + ....++++++.|+ |+++++...+
T Consensus 52 ~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~d--G~l~~~~~~~~~~~~~~~~ 127 (297)
T 3g4e_A 52 MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPA--GRYFAGTMAEETAPAVLER 127 (297)
T ss_dssp CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTT--SCEEEEEEECCSBTTBCCT
T ss_pred CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCC--CCEEEecCCcccccccccC
Confidence 45789999999999966654 56899999988765432211 1 2345889999998 7877765332
Q ss_pred CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC--CCCCCCCCCCCCCccc
Q 004468 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR--QGSSCPPAGSSHQECR 194 (751)
Q Consensus 117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr--~~~~~~~~~~~~~~~~ 194 (751)
....||.+... + . +..+..+....+.++|+|++..++++.+.++.|.+||+. ++.. ...
T Consensus 128 ~~~~l~~~d~~-g--------~-~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~---------~~~ 188 (297)
T 3g4e_A 128 HQGALYSLFPD-H--------H-VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQI---------SNR 188 (297)
T ss_dssp TCEEEEEECTT-S--------C-EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCE---------EEE
T ss_pred CCcEEEEEECC-C--------C-EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcc---------cCc
Confidence 33466666532 1 1 222333445678999999655566778888999999974 3321 001
Q ss_pred eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004468 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (751)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (751)
.++..+. ........+++.++ +++.++...++.|.+||..+++.+..+..
T Consensus 189 ~~~~~~~-----------~~~~~p~g~~~d~~-G~lwva~~~~~~v~~~d~~tG~~~~~i~~------------------ 238 (297)
T 3g4e_A 189 RSVYKLE-----------KEEQIPDGMCIDAE-GKLWVACYNGGRVIRLDPVTGKRLQTVKL------------------ 238 (297)
T ss_dssp EEEEECC-----------GGGCEEEEEEEBTT-SCEEEEEETTTEEEEECTTTCCEEEEEEC------------------
T ss_pred EEEEECC-----------CCCCCCCeeEECCC-CCEEEEEcCCCEEEEEcCCCceEEEEEEC------------------
Confidence 1222211 12245678999995 67888777888999999987654332210
Q ss_pred CCccccceEEEEEc-CCCCEEEEEeC
Q 004468 275 HGRSSLHLTHVTFS-PNGEEVLLSYS 299 (751)
Q Consensus 275 ~g~~~~~vt~v~fs-pdg~~Ll~~s~ 299 (751)
+ ...+++++|. |+++.|++++.
T Consensus 239 --p-~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 239 --P-VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp --S-SSBEEEEEEESGGGCEEEEEEB
T ss_pred --C-CCCceEEEEeCCCCCEEEEEcC
Confidence 1 1148999998 89988877765
No 210
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.74 E-value=5.5e-07 Score=95.69 Aligned_cols=263 Identities=13% Similarity=0.095 Sum_probs=147.8
Q ss_pred ccccccEEeccCCCcEEEEEECCCCCEEEEEe--CCCcEEEEeCCCCeEEEEe------cccCCcceEEEEEecCCCCcE
Q 004468 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGS--DDTHINVWSYSSRKLLHSI------ETGHSANVFCTKFVPETSDEL 109 (751)
Q Consensus 38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs--~Dg~I~IWd~~~~~~~~~l------~~~h~~~V~~v~fsp~s~~~~ 109 (751)
..++.++.+. ..+..|+++++|+++++.. .++.++||.+.+++.. .+ ..+|-..+..++|.|+ +++
T Consensus 7 g~~~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~--g~L 80 (343)
T 2qe8_A 7 DRLEVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGN--GIV 80 (343)
T ss_dssp -CCEEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSS--SEE
T ss_pred ceeEEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCC--CcE
Confidence 3455555544 7899999999999999874 2343666665555433 22 1235678999999998 677
Q ss_pred EEEEEC-----CCcEEEEECCCCCCCCCCCCCCCCceeec------ccCCceeEEEEecCCCCEEEEEe---CCCcEEEE
Q 004468 110 VVSGAG-----DAEVRLFNLSRFSGRGLDDNAITPSALYQ------CHTRRVKKLAVEVGNPHVVWSAS---EDGTLRQH 175 (751)
Q Consensus 110 l~sgs~-----Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~------~h~~~V~~l~~sp~~~~~l~s~s---~Dg~I~iw 175 (751)
+++-.. +..|.+||+.++. .+..+. .+...+..++++++++.++++.. .++.|.+|
T Consensus 81 ~v~D~g~~~~~~~~i~~~d~~tg~----------~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~ 150 (343)
T 2qe8_A 81 WMLDNGNQSKSVPKLVAWDTLNNQ----------LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRV 150 (343)
T ss_dssp EEEECHHHHTSCCEEEEEETTTTE----------EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEE
T ss_pred EEEcCCCCcCCCCeEEEEECCCCe----------EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEE
Confidence 666544 5789999998642 122222 23345789999986667777776 78899999
Q ss_pred ecCCCCCCCCCCCC---CCccceEEEecccCceecccCCCC----CccceEEEEEeCCCCcEEEEEeCCC-eEEEEeCCC
Q 004468 176 DFRQGSSCPPAGSS---HQECRNILLDLRCGAKRSLADPPK----QTLSLKSCDISSTRPHLLLVGGSDA-FARLYDRRM 247 (751)
Q Consensus 176 Dlr~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~----~~~~v~~i~~sp~~~~~l~sgs~D~-~IriwD~~~ 247 (751)
|+.+++........ ..+...+..+ +.........+ ....+..|+|+|+ ++.|+++..++ .|..++...
T Consensus 151 d~~~g~~~r~~~~~~~~~~~~~~~~~~---g~~~~~~~~~g~~~~~~~~~~gia~s~d-g~~ly~~~~~~~~l~~~~~~~ 226 (343)
T 2qe8_A 151 DLQTGLAARVLQGYPGIAPEDIDLVID---GVPVQIGQPDGTVIRPHLGVNGIVLDAE-NEWLYLSPMHSTSMYRIKSAD 226 (343)
T ss_dssp ETTTCCEEEECTTCTTTSCCSCCCEET---TEECBEECTTSCEECCCCCEEEEEECTT-SCEEEEEESSCSEEEEEEHHH
T ss_pred ECCCCCEEEEecCCCcccccccceeEC---CEEEEeccCCCceeceecccceeEeccC-CCEEEEEeCCCCeEEEEEHHH
Confidence 99876532111000 0000000000 00000000000 0124688999995 67777776665 555554321
Q ss_pred CCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeec--CCCce
Q 004468 248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV--GDASK 325 (751)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~--~~~~~ 325 (751)
.... .+ ...+.+. .+...++.. ....++++++|+.+++...++.|.+||..++.. ...... ...+.
T Consensus 227 ~~~~-~~-------~~~~~~~--~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~-~~~~~~~~~~~p~ 294 (343)
T 2qe8_A 227 LSNL-QL-------TDAELGS--KIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAY-KLLVTDEKLSWTD 294 (343)
T ss_dssp HTCT-TC-------CHHHHHT--TCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE-EEEEECGGGSCEE
T ss_pred hcCC-CC-------Chhhhhc--ceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCE-EEEEECCceecCC
Confidence 1100 00 0000000 000001111 255789999999988888899999999854432 222221 23456
Q ss_pred eEEeCCC
Q 004468 326 IMSFTPT 332 (751)
Q Consensus 326 ~~~~sp~ 332 (751)
.+++.++
T Consensus 295 ~va~~~~ 301 (343)
T 2qe8_A 295 SFNFGSD 301 (343)
T ss_dssp EEEECTT
T ss_pred eeEECCC
Confidence 7777765
No 211
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.74 E-value=2.5e-06 Score=89.95 Aligned_cols=224 Identities=10% Similarity=-0.010 Sum_probs=132.9
Q ss_pred CcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004468 51 GCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (751)
Q Consensus 51 ~~V~~l~~s~d-g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~ 129 (751)
.-.....|+|+ +.++++...++.|.+||..+++... + .....|.+++|.|+ ++++++. . ..|.+||..++..
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~--~~~~~v~~i~~~~d--g~l~v~~-~-~gl~~~d~~~g~~ 121 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-H--ALPFMGSALAKISD--SKQLIAS-D-DGLFLRDTATGVL 121 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-E--ECSSCEEEEEEEET--TEEEEEE-T-TEEEEEETTTCCE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-E--ECCCcceEEEEeCC--CeEEEEE-C-CCEEEEECCCCcE
Confidence 34568899997 4566777778999999998776432 3 13467999999999 7777754 4 4499999875321
Q ss_pred CCCCCCCCCCceeec--ccCCceeEEEEecCCCCEEEEEeCC------CcEEEEecCCCCCCCCCCCCCCccceEEEecc
Q 004468 130 RGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASED------GTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (751)
Q Consensus 130 ~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~l~s~s~D------g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~ 201 (751)
..+.... .....+..++++| +++++++...+ +.|..+| +++. ..+..
T Consensus 122 --------~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~------------~~~~~-- 176 (326)
T 2ghs_A 122 --------TLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKV------------TKLFA-- 176 (326)
T ss_dssp --------EEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEE------------EEEEE--
T ss_pred --------EEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcE------------EEeeC--
Confidence 1111111 1124688999999 55666554321 3444444 2220 01110
Q ss_pred cCceecccCCCCCccceEEEEEeCCCCcEE-EEEeCCCeEEEEeCC--CC-CCccccCCCCCCCCccccccccccccCCc
Q 004468 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRR--ML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (751)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~sgs~D~~IriwD~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 277 (751)
.......++|+|+ ++.+ ++...++.|.+||+. ++ .... .+.+.. +. ..
T Consensus 177 ------------~~~~~~~i~~s~d-g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~-----------~~~~~~--~~--~~ 228 (326)
T 2ghs_A 177 ------------DISIPNSICFSPD-GTTGYFVDTKVNRLMRVPLDARTGLPTGK-----------AEVFID--ST--GI 228 (326)
T ss_dssp ------------EESSEEEEEECTT-SCEEEEEETTTCEEEEEEBCTTTCCBSSC-----------CEEEEE--CT--TS
T ss_pred ------------CCcccCCeEEcCC-CCEEEEEECCCCEEEEEEcccccCCcccC-----------ceEEEE--CC--CC
Confidence 1123568999996 5544 555567899999986 33 2100 000100 00 01
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeC-CCCCCc
Q 004468 278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT-PTLNGL 336 (751)
Q Consensus 278 ~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~s-p~~~~~ 336 (751)
...+..++++++|++.++...++.|++||.. ++...........+..++|. |+.+.+
T Consensus 229 -~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i~~~~~~~~~~af~g~d~~~L 286 (326)
T 2ghs_A 229 -KGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCPAFIGPDASRL 286 (326)
T ss_dssp -SSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEEEEESTTSCEE
T ss_pred -CCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEEECCCCCcEEEEEecCCCCEE
Confidence 1136789999999877777778899999984 33322222233346677776 655444
No 212
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.73 E-value=3.8e-09 Score=113.82 Aligned_cols=182 Identities=12% Similarity=0.098 Sum_probs=103.0
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCc
Q 004468 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (751)
Q Consensus 61 dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~ 140 (751)
++.+|++++.|+.|..||..+|+.+..+. . +.+.+..+.++ +.++++++.|+.|+.||..+++. +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~-~--~~~~s~p~~~~--g~~~v~~s~dg~l~a~d~~tG~~----------~ 72 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLK-E--DPVLQVPTHVE--EPAFLPDPNDGSLYTLGSKNNEG----------L 72 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEE-C--CCSCCCC-------CCEEECTTTCCEEEC-----CC----------S
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEec-C--CCceecceEcC--CCEEEEeCCCCEEEEEECCCCce----------e
Confidence 57789999999999999999999998883 3 55666666666 67888888999999999986532 2
Q ss_pred eeecccCC-cee-EEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccce
Q 004468 141 ALYQCHTR-RVK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL 218 (751)
Q Consensus 141 ~~~~~h~~-~V~-~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v 218 (751)
..+..+.. .+. +..+.. + ..+++++.|+.|+.||.++++.. |....+ .
T Consensus 73 w~~~~~~~~~~~~sp~~~~-~-~~v~~g~~dg~v~a~D~~tG~~~--------------w~~~~~-----------~--- 122 (369)
T 2hz6_A 73 TKLPFTIPELVQASPCRSS-D-GILYMGKKQDIWYVIDLLTGEKQ--------------QTLSSA-----------F--- 122 (369)
T ss_dssp EECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC----------------------------------------
T ss_pred eeeeccCccccccCceEec-C-CEEEEEeCCCEEEEEECCCCcEE--------------EEecCC-----------C---
Confidence 22222211 110 001111 3 45668888999999999988643 211110 0
Q ss_pred EEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCC---CEEE
Q 004468 219 KSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG---EEVL 295 (751)
Q Consensus 219 ~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg---~~Ll 295 (751)
...++| ++..+++++.|+.|+.||.++++.+..+... .....+++++. ..++
T Consensus 123 -~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-----------------------~~~~~~~~~~~~~~~~v~ 177 (369)
T 2hz6_A 123 -ADSLSP-STSLLYLGRTEYTITMYDTKTRELRWNATYF-----------------------DYAASLPEDDVDYKMSHF 177 (369)
T ss_dssp ------------EEEEEEEEEEECCCSSSSSCCCEEEEE-----------------------EECCBCCCCCTTCCCCEE
T ss_pred -cccccc-cCCEEEEEecCCEEEEEECCCCCEEEeEecc-----------------------cccCccccCCccccceEE
Confidence 123456 4678888999999999999987654332100 01112233332 5677
Q ss_pred EEeCCCcEEEEECCCCC
Q 004468 296 LSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 296 ~~s~d~~I~lwdl~~~~ 312 (751)
+++.++.|+.||..+++
T Consensus 178 ~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 178 VSNGDGLVVTVDSESGD 194 (369)
T ss_dssp EEETSCEEEEECTTTCC
T ss_pred EECCCCEEEEEECCCCc
Confidence 88899999999999865
No 213
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.71 E-value=1.4e-07 Score=101.27 Aligned_cols=145 Identities=16% Similarity=0.164 Sum_probs=103.4
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCC
Q 004468 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (751)
Q Consensus 48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~ 127 (751)
.+.+ |+.|+| ++++|+++ .++.|++||+.+......+ ..|...|.++.+.+. + ++++..||.|.+||+...
T Consensus 86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~-~~~~~~v~~i~~~~p---~-~av~~~dG~L~v~dl~~~ 156 (388)
T 1xip_A 86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTV-TSFEKPVFQLKNVNN---T-LVILNSVNDLSALDLRTK 156 (388)
T ss_dssp ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEE-EECSSCEEEEEECSS---E-EEEEETTSEEEEEETTTC
T ss_pred eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCcc-ceeecceeeEEecCC---C-EEEEECCCCEEEEEccCC
Confidence 4667 999999 99999999 8899999998766554445 567888999988866 2 888899999999999853
Q ss_pred CCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceec
Q 004468 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (751)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (751)
. .. .+...|++++|+| .+ ++.|..||+|++|+........ ...+ ... ..
T Consensus 157 ~----------~~----~~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~~~~~~---------k~~I---~~P--p~ 205 (388)
T 1xip_A 157 S----------TK----QLAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAWRNGEMEK---------QFEF---SLP--SE 205 (388)
T ss_dssp C----------EE----EEEESEEEEEECS-SE--EEEEETTSCEEEEEEETTEEEE---------EEEE---CCC--HH
T ss_pred c----------cc----cccCCceEEEEcC-Cc--eEEEEcCCcEEEEcCCCccccc---------ccee---cCC--cc
Confidence 1 11 2567899999999 44 6789999999999887654100 0000 000 00
Q ss_pred ccCCCCCccceEEEEEeCCCCcEEEE
Q 004468 208 LADPPKQTLSLKSCDISSTRPHLLLV 233 (751)
Q Consensus 208 ~~~~~~~~~~v~~i~~sp~~~~~l~s 233 (751)
+.....+...|.++.|.++ ..++++
T Consensus 206 ~~~~~~~~~~V~sI~wl~~-~~flv~ 230 (388)
T 1xip_A 206 LEELPVEEYSPLSVTILSP-QDFLAV 230 (388)
T ss_dssp HHTSCTTTSEEEEEEESSS-SEEEEE
T ss_pred cccccCCCeeEEEEEEecC-CeEEEE
Confidence 1111124578999999984 566665
No 214
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.71 E-value=2.8e-07 Score=98.46 Aligned_cols=249 Identities=10% Similarity=-0.006 Sum_probs=145.1
Q ss_pred hccccccEEeccCCCcEEEEEECCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEecccC------CcceEEEE
Q 004468 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETGH------SANVFCTK 100 (751)
Q Consensus 37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs----------~Dg~I~IWd~~~~~~~~~l~~~h------~~~V~~v~ 100 (751)
..+.+.+.++..-..+ .+.++|||++|..+. .+++|.+||+.+++.+.++..+. ......++
T Consensus 53 ~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia 130 (368)
T 1mda_H 53 AGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIG 130 (368)
T ss_dssp TTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEE
T ss_pred CCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEE
Confidence 4567778888655555 799999999888886 37889999999999999884320 13466899
Q ss_pred EecCCCCcEEEEEEC--CCcEEE--EECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEe
Q 004468 101 FVPETSDELVVSGAG--DAEVRL--FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD 176 (751)
Q Consensus 101 fsp~s~~~~l~sgs~--Dg~V~v--wd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwD 176 (751)
|+|+ |++++.+.. +..|.+ +|+.+ +..+.- .+. +.+.|++...+++.+.||++.+.|
T Consensus 131 ~SpD--Gk~lyVan~~~~~~v~V~~iD~~t-------------v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd 191 (368)
T 1mda_H 131 NCAS--SACLLFFLFGSSAAAGLSVPGASD-------------DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASD 191 (368)
T ss_dssp ECTT--SSCEEEEECSSSCEEEEEETTTEE-------------EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEE
T ss_pred EcCC--CCEEEEEccCCCCeEEEEEEchhh-------------ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEE
Confidence 9999 788887764 467888 88863 112210 010 123354556677777888888888
Q ss_pred cCC-----CCCCCC----CCCC-----CCc---------cceEEEecccCceecccCCCC----------CccceEEEEE
Q 004468 177 FRQ-----GSSCPP----AGSS-----HQE---------CRNILLDLRCGAKRSLADPPK----------QTLSLKSCDI 223 (751)
Q Consensus 177 lr~-----~~~~~~----~~~~-----~~~---------~~~~l~~~~~~~~~~~~~~~~----------~~~~v~~i~~ 223 (751)
+.+ ++.... ...+ ... .....++...+....+....- .......++|
T Consensus 192 ~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~ 271 (368)
T 1mda_H 192 LAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK 271 (368)
T ss_dssp CCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEE
T ss_pred CccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEE
Confidence 876 322100 0000 000 011122222111000000000 0011122689
Q ss_pred eCCCCcEEEEE-e---C-----CCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCE-
Q 004468 224 SSTRPHLLLVG-G---S-----DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEE- 293 (751)
Q Consensus 224 sp~~~~~l~sg-s---~-----D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~- 293 (751)
+|++ +.++++ . . +..+.++|+.+.+.+..+.. ......++|+|||++
T Consensus 272 s~dg-~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v----------------------g~~p~gi~~s~Dg~~l 328 (368)
T 1mda_H 272 LKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN----------------------GHDSDAIIAAQDGASD 328 (368)
T ss_dssp ETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE----------------------EEEECEEEECCSSSCE
T ss_pred cCCC-CEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC----------------------CCCcceEEECCCCCEE
Confidence 9964 555543 3 2 23566999998775543311 113778999999985
Q ss_pred EEEEe-CCCcEEEEECCCCCcceeeeecCCCceeEEeC
Q 004468 294 VLLSY-SGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT 330 (751)
Q Consensus 294 Ll~~s-~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~s 330 (751)
++++. .++.|.++|+.+.+. ......+..+..+++.
T Consensus 329 ~va~~~~~~~VsVID~~t~kv-v~~I~vg~~P~~i~~~ 365 (368)
T 1mda_H 329 NYANSAGTEVLDIYDAASDQD-QSSVELDKGPESLSVQ 365 (368)
T ss_dssp EEEEETTTTEEEEEESSSCEE-EEECCCCSCCCEEECC
T ss_pred EEEccCCCCeEEEEECCCCcE-EEEEECCCCCCEEEee
Confidence 55555 589999999999542 2333334444444443
No 215
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.71 E-value=7e-07 Score=93.08 Aligned_cols=229 Identities=11% Similarity=0.039 Sum_probs=140.4
Q ss_pred cccEEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004468 41 SQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (751)
Q Consensus 41 ~~~~~L~gH~~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V 119 (751)
..+..|..+........|+++|+ +++++..++.|..|+. ++.. ..+ ..+...+..+++.|+ |+++++...++.|
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~-~~~~~~~~gl~~d~d--G~l~v~~~~~~~v 109 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVL-LDATAFTNGNAVDAQ--QRLVHCEHGRRAI 109 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEE-EESCSCEEEEEECTT--SCEEEEETTTTEE
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEE-eCCCCccceeeECCC--CCEEEEECCCCEE
Confidence 34555666667788999999998 7778888899999998 4443 334 345677999999998 7877766667889
Q ss_pred EEEECCCCCCCCCCCCCCCCceeec----c-cCCceeEEEEecCCCCEEEE----EeC-------------CCcEEEEec
Q 004468 120 RLFNLSRFSGRGLDDNAITPSALYQ----C-HTRRVKKLAVEVGNPHVVWS----ASE-------------DGTLRQHDF 177 (751)
Q Consensus 120 ~vwd~~~~~~~~~~~~~~~~~~~~~----~-h~~~V~~l~~sp~~~~~l~s----~s~-------------Dg~I~iwDl 177 (751)
.+|+.. +. ...+. + ....+..+++.| ++.+++| |.. .+.|..||.
T Consensus 110 ~~~~~~-g~-----------~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~ 176 (305)
T 3dr2_A 110 TRSDAD-GQ-----------AHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP 176 (305)
T ss_dssp EEECTT-SC-----------EEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS
T ss_pred EEECCC-CC-----------EEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcC
Confidence 999875 21 12221 1 123467899998 5677765 322 234555665
Q ss_pred CCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC------CeEEEEeCCCCCCc
Q 004468 178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD------AFARLYDRRMLPPL 251 (751)
Q Consensus 178 r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D------~~IriwD~~~~~~~ 251 (751)
.+++.. .+. .......++|+|+ ++.|+++... +.|++||+.... +
T Consensus 177 ~~g~~~-----------------------~~~----~~~~p~gl~~spd-g~~lyv~~~~~~~~~~~~i~~~~~~~~~-l 227 (305)
T 3dr2_A 177 DGSPLQ-----------------------RMA----DLDHPNGLAFSPD-EQTLYVSQTPEQGHGSVEITAFAWRDGA-L 227 (305)
T ss_dssp SSCCCE-----------------------EEE----EESSEEEEEECTT-SSEEEEEECCC---CCCEEEEEEEETTE-E
T ss_pred CCCcEE-----------------------EEe----cCCCCcceEEcCC-CCEEEEEecCCcCCCCCEEEEEEecCCC-c
Confidence 444310 010 1124567999995 6766666655 789999986432 1
Q ss_pred cccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCC
Q 004468 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (751)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp 331 (751)
.. ...+... . ......++++++|+ |.++..+ .|++|+... + ....+.....+..++|.|
T Consensus 228 ~~----------~~~~~~~---~----~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~~g-~-~~~~~~~~~~~~~~~f~~ 286 (305)
T 3dr2_A 228 HD----------RRHFASV---P----DGLPDGFCVDRGGW-LWSSSGT-GVCVFDSDG-Q-LLGHIPTPGTASNCTFDQ 286 (305)
T ss_dssp EE----------EEEEECC---S----SSCCCSEEECTTSC-EEECCSS-EEEEECTTS-C-EEEEEECSSCCCEEEECT
T ss_pred cC----------CeEEEEC---C----CCCCCeEEECCCCC-EEEecCC-cEEEECCCC-C-EEEEEECCCceeEEEEeC
Confidence 10 0011000 0 11245689999999 4445444 599999854 3 222333333566778886
Q ss_pred CCCCcc
Q 004468 332 TLNGLE 337 (751)
Q Consensus 332 ~~~~~~ 337 (751)
+.+.+.
T Consensus 287 d~~~L~ 292 (305)
T 3dr2_A 287 AQQRLF 292 (305)
T ss_dssp TSCEEE
T ss_pred CCCEEE
Confidence 655443
No 216
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.59 E-value=5.9e-06 Score=87.00 Aligned_cols=193 Identities=11% Similarity=0.093 Sum_probs=118.3
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc--cC-CcceEEEEEecCCCCcEEEEEECC----CcEEEE
Q 004468 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET--GH-SANVFCTKFVPETSDELVVSGAGD----AEVRLF 122 (751)
Q Consensus 50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~--~h-~~~V~~v~fsp~s~~~~l~sgs~D----g~V~vw 122 (751)
...|.++.|+++|+++++. .+ .|.+||..+++....... +. ...+.++++.|+ |+++++...+ ....||
T Consensus 89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~--G~l~v~~~~~~~~~~~~~l~ 164 (326)
T 2ghs_A 89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS--GALWIGTMGRKAETGAGSIY 164 (326)
T ss_dssp SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT--SCEEEEEEETTCCTTCEEEE
T ss_pred CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCC--CCEEEEeCCCcCCCCceEEE
Confidence 4679999999999988765 44 499999987765432211 11 246899999998 7777765432 233444
Q ss_pred ECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC--CC-CCCCCCCCCCCccceEEEe
Q 004468 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR--QG-SSCPPAGSSHQECRNILLD 199 (751)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr--~~-~~~~~~~~~~~~~~~~l~~ 199 (751)
.+..+ + +..+..+......++|+|++..++++.+.++.|.+||+. ++ ... ....+..
T Consensus 165 ~~~~g----------~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~---------~~~~~~~ 224 (326)
T 2ghs_A 165 HVAKG----------K-VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG---------KAEVFID 224 (326)
T ss_dssp EEETT----------E-EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS---------CCEEEEE
T ss_pred EEeCC----------c-EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc---------CceEEEE
Confidence 44321 1 222323344577899999544455666678899999986 33 210 0112221
Q ss_pred cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc
Q 004468 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (751)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (751)
.. ........+.+.++ +++.++...++.|.+||. .++.+..+. .+ .
T Consensus 225 ~~-----------~~~~~p~gi~~d~~-G~lwva~~~~~~v~~~d~-~g~~~~~i~--------------------~~-~ 270 (326)
T 2ghs_A 225 ST-----------GIKGGMDGSVCDAE-GHIWNARWGEGAVDRYDT-DGNHIARYE--------------------VP-G 270 (326)
T ss_dssp CT-----------TSSSEEEEEEECTT-SCEEEEEETTTEEEEECT-TCCEEEEEE--------------------CS-C
T ss_pred CC-----------CCCCCCCeeEECCC-CCEEEEEeCCCEEEEECC-CCCEEEEEE--------------------CC-C
Confidence 11 11234567889985 677777667789999997 333221110 01 1
Q ss_pred cceEEEEEc-CCCCEEEEEeCC
Q 004468 280 LHLTHVTFS-PNGEEVLLSYSG 300 (751)
Q Consensus 280 ~~vt~v~fs-pdg~~Ll~~s~d 300 (751)
..+++++|+ |+++.|++++..
T Consensus 271 ~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 271 KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp SBEEEEEEESTTSCEEEEEEBC
T ss_pred CCcEEEEEecCCCCEEEEEecC
Confidence 148999998 898888766653
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.58 E-value=5.5e-06 Score=90.29 Aligned_cols=219 Identities=8% Similarity=-0.055 Sum_probs=133.1
Q ss_pred EEECCCCCEEEEEeCCC--cEEEEeCCCCeEEEEe---cccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCC
Q 004468 56 ISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSI---ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (751)
Q Consensus 56 l~~s~dg~~LaSgs~Dg--~I~IWd~~~~~~~~~l---~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~ 130 (751)
++|+++++.|+++..++ .|.+|+...+.....+ .......+.+++++|+. +. |+.+..++.|+.||.....
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~-g~-lyv~d~~~~I~~~d~~~~~-- 251 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETE-EW-LYFVDSNKNFGRFNVKTQE-- 251 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTS-SE-EEEECTTCEEEEEETTTCC--
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCC-Ce-EEEEECCCcEEEEECCCCC--
Confidence 99999999999998876 7888887655432222 11245678899999962 44 4447778899999998532
Q ss_pred CCCCCCCCCceee-----cccCCce-e-EEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecc--
Q 004468 131 GLDDNAITPSALY-----QCHTRRV-K-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR-- 201 (751)
Q Consensus 131 ~~~~~~~~~~~~~-----~~h~~~V-~-~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~-- 201 (751)
...+ .++...- . .++|+|+++.++++-...+.|+.||..... ..+....
T Consensus 252 ---------~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~-------------~~~~g~~~~ 309 (409)
T 3hrp_A 252 ---------VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC-------------EWFCGSATQ 309 (409)
T ss_dssp ---------EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE-------------EEEEECTTC
T ss_pred ---------EEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE-------------EEEEeCCCC
Confidence 1111 1222222 3 899999777888888889999999876431 1111110
Q ss_pred cCceecccCCCCCccceEEEEEeCCCCcEEEEEe-CCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcccc
Q 004468 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (751)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs-~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (751)
.+.... ............++++|+ ++++++-. .++.|+.||+..+... .+...... .-+... ..... .-.
T Consensus 310 ~g~~dg-~~~~~~~~~P~gia~d~d-G~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~----~g~~~g-~~~~~-~~~ 380 (409)
T 3hrp_A 310 KTVQDG-LREEALFAQPNGMTVDED-GNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDV----ASQIDG-TPLEA-TFN 380 (409)
T ss_dssp CSCBCE-EGGGCBCSSEEEEEECTT-CCEEEEETTTTCEEEEEETTTTEEE-EEEECTTC----BSCCCB-STTTC-CBS
T ss_pred CCcCCC-cccccEeCCCeEEEEeCC-CCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCC----CCcCCC-Chhce-EeC
Confidence 000000 000001234788999995 67777777 8899999997655321 11100000 000000 00000 011
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004468 281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (751)
Q Consensus 281 ~vt~v~fspdg~~Ll~~s~d~~I~lwdl~ 309 (751)
....++++++|..+++-..++.|+.++++
T Consensus 381 ~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 381 YPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp SEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred CceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 47899999998888888889999988753
No 218
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.57 E-value=1e-06 Score=103.99 Aligned_cols=200 Identities=13% Similarity=0.128 Sum_probs=124.8
Q ss_pred EEEEECCCCCEEEEEeCCCc--------------EEEEeCCCCe----EEEEecccCCcceEEEEEecCCCCcEEEEEEC
Q 004468 54 NAISWNSKGSLLISGSDDTH--------------INVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (751)
Q Consensus 54 ~~l~~s~dg~~LaSgs~Dg~--------------I~IWd~~~~~----~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~ 115 (751)
..++|+|| +.|+.++.|+. |.+|++.++. .+... ..|...+..+.|+|+ |++|+..+.
T Consensus 212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~-~~~~~~~~~~~~SpD--G~~l~~~~~ 287 (741)
T 1yr2_A 212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT-PELPKRGHGASVSSD--GRWVVITSS 287 (741)
T ss_dssp CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECC-TTCTTCEEEEEECTT--SCEEEEEEE
T ss_pred ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEecc-CCCCeEEEEEEECCC--CCEEEEEEE
Confidence 57899999 99998887665 8899987665 22222 334456899999999 888887765
Q ss_pred CC-----cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeC----CCcEEEEecCCCCCCCCC
Q 004468 116 DA-----EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE----DGTLRQHDFRQGSSCPPA 186 (751)
Q Consensus 116 Dg-----~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~----Dg~I~iwDlr~~~~~~~~ 186 (751)
++ .|++||+..+.. ++...+..+...+.... +|++ ..|+..+. ++.|.+||+.++. .
T Consensus 288 ~~~~~~~~l~~~d~~~~~~--------~~~~~l~~~~~~~~~~~-~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~-~--- 353 (741)
T 1yr2_A 288 EGTDPVNTVHVARVTNGKI--------GPVTALIPDLKAQWDFV-DGVG-DQLWFVSGDGAPLKKIVRVDLSGST-P--- 353 (741)
T ss_dssp CTTCSCCEEEEEEEETTEE--------CCCEEEECSSSSCEEEE-EEET-TEEEEEECTTCTTCEEEEEECSSSS-C---
T ss_pred ccCCCcceEEEEECCCCCC--------cccEEecCCCCceEEEE-eccC-CEEEEEECCCCCCCEEEEEeCCCCc-c---
Confidence 44 899999975311 10344445555555553 4744 55555554 3458899987631 0
Q ss_pred CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC-CCCccccCCCCCCCCccc
Q 004468 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVN 265 (751)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~-~~~~~~~~~~~~~~~~~~ 265 (751)
.. ..++ +.+...+..++++ ++.++++...|+..+||.+.. +... +
T Consensus 354 -----~~-~~l~-------------~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~-------------~ 399 (741)
T 1yr2_A 354 -----RF-DTVV-------------PESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPA-------------G 399 (741)
T ss_dssp -----EE-EEEE-------------CCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEE-------------E
T ss_pred -----cc-EEEe-------------cCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCce-------------e
Confidence 00 1111 1122345667777 457888999999888886542 2111 1
Q ss_pred cccccccccCCccccceEEEEEcCCCCEEEEEeC----CCcEEEEECCCCC
Q 004468 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----GEHVYLMDVNHAG 312 (751)
Q Consensus 266 ~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~----d~~I~lwdl~~~~ 312 (751)
.+ .+ +....+..+.++|+++.|+.... .+.|++||+.++.
T Consensus 400 ~l---~~----~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 400 AV---SL----PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EC---BC----SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred ec---cC----CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 11 00 11124888999999987664433 4799999998754
No 219
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.56 E-value=2.7e-05 Score=83.54 Aligned_cols=247 Identities=11% Similarity=-0.036 Sum_probs=138.9
Q ss_pred EECCCCCEEEEEeC--CC---cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE----------CCCcEEE
Q 004468 57 SWNSKGSLLISGSD--DT---HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVRL 121 (751)
Q Consensus 57 ~~s~dg~~LaSgs~--Dg---~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs----------~Dg~V~v 121 (751)
...|+++++.+... .. +|.+||..+++.+..+..+. .+ .++|+|+ +++++.+. .++.|.+
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~-~p--~i~~spD--g~~lyv~n~~~~~~~rg~~~~~v~v 101 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF-LP--NPVAAHS--GSEFALASTSFSRIAKGKRTDYVEV 101 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCC-CC--CeEECCC--CCEEEEEeccccccccCCCCCeEEE
Confidence 34467776666543 22 88999999999988884442 33 9999999 78887765 3688999
Q ss_pred EECCCCCCCCCCCCCCCCceeeccc-------CCceeEEEEecCCCCEEEEEeC--CCcEEEEecCCCCCCCC-CCCCC-
Q 004468 122 FNLSRFSGRGLDDNAITPSALYQCH-------TRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPP-AGSSH- 190 (751)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h-------~~~V~~l~~sp~~~~~l~s~s~--Dg~I~iwDlr~~~~~~~-~~~~~- 190 (751)
||..+. +.+..+... ......++|+| ++++|+.+.. +++|.++| .+++.... .....
T Consensus 102 iD~~t~----------~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~ 169 (373)
T 2mad_H 102 FDPVTF----------LPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC 169 (373)
T ss_pred EECCCC----------cEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce
Confidence 999853 223322211 12345899999 4566655553 57899999 88765433 21110
Q ss_pred ---------------CccceEEEecccCceecccC----CCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 004468 191 ---------------QECRNILLDLRCGAKRSLAD----PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (751)
Q Consensus 191 ---------------~~~~~~l~~~~~~~~~~~~~----~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~ 251 (751)
.+.....++. .+....... ............+.++++.++++. .++.|.+.|+......
T Consensus 170 ~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~ 247 (373)
T 2mad_H 170 YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGAT 247 (373)
T ss_pred EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcce
Confidence 0111122222 222110000 000000112234556544444444 6788999998643211
Q ss_pred --cccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCCcceeeee
Q 004468 252 --TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----------GEHVYLMDVNHAGGRAMRYT 319 (751)
Q Consensus 252 --~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~----------d~~I~lwdl~~~~~~~~~~~ 319 (751)
..+... .......+........++++|++++|++... ++.|.++|+.+.+... ...
T Consensus 248 v~~~~~~~-----------~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~-~i~ 315 (373)
T 2mad_H 248 NKAPIDAL-----------SGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS-QIS 315 (373)
T ss_pred Eeeeeeec-----------CCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE-EEE
Confidence 000000 0000000011112445789999999888654 3589999999854333 335
Q ss_pred cCCCceeEEeCCCCC
Q 004468 320 VGDASKIMSFTPTLN 334 (751)
Q Consensus 320 ~~~~~~~~~~sp~~~ 334 (751)
.+..+..+.|+|+.+
T Consensus 316 ~g~~p~~i~~s~Dg~ 330 (373)
T 2mad_H 316 LGHDVDAISVAQDGG 330 (373)
T ss_pred CCCCcCeEEECCCCC
Confidence 566788899999877
No 220
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.48 E-value=1.4e-05 Score=80.76 Aligned_cols=225 Identities=7% Similarity=-0.032 Sum_probs=137.6
Q ss_pred cccccEEeccCCC--cEEEEEECCCCCEEEEEeC--CCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE
Q 004468 39 RLSQERELEGHQG--CVNAISWNSKGSLLISGSD--DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA 114 (751)
Q Consensus 39 ~~~~~~~L~gH~~--~V~~l~~s~dg~~LaSgs~--Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs 114 (751)
+.+.++++. |.. ....|.|+++|.+.++.+. ++.|.+.|+.+++.+..+..+.......+++.. +.+.++.-
T Consensus 8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g---~~lyv~t~ 83 (266)
T 2iwa_A 8 IVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN---EKLYQVVW 83 (266)
T ss_dssp EEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET---TEEEEEET
T ss_pred CceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC---CEEEEEEe
Confidence 455667774 553 3689999999876666654 679999999999999887433222223444442 35666667
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004468 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (751)
Q Consensus 115 ~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~ 194 (751)
.++.|.++|..+. +.+..+.--... ...+++++..++++- .+++|.++|..+.+...
T Consensus 84 ~~~~v~viD~~t~----------~v~~~i~~g~~~--g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~---------- 140 (266)
T 2iwa_A 84 LKNIGFIYDRRTL----------SNIKNFTHQMKD--GWGLATDGKILYGSD-GTSILYEIDPHTFKLIK---------- 140 (266)
T ss_dssp TCSEEEEEETTTT----------EEEEEEECCSSS--CCEEEECSSSEEEEC-SSSEEEEECTTTCCEEE----------
T ss_pred cCCEEEEEECCCC----------cEEEEEECCCCC--eEEEEECCCEEEEEC-CCCeEEEEECCCCcEEE----------
Confidence 7899999999864 335555321111 234556566666654 68899999998765220
Q ss_pred eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004468 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (751)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (751)
.+... ..+.....++.+.|. ++.+++....++.|.+.|..+++.+..+... ...+.....
T Consensus 141 ~I~Vg----------~~~~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~--------g~~~~~~~~ 200 (266)
T 2iwa_A 141 KHNVK----------YNGHRVIRLNELEYI--NGEVWANIWQTDCIARISAKDGTLLGWILLP--------NLRKKLIDE 200 (266)
T ss_dssp EEECE----------ETTEECCCEEEEEEE--TTEEEEEETTSSEEEEEETTTCCEEEEEECH--------HHHHHHHHT
T ss_pred EEEEC----------CCCcccccceeEEEE--CCEEEEecCCCCeEEEEECCCCcEEEEEECC--------Ccccccccc
Confidence 11100 000011235677777 3566666667889999999998765543211 000000000
Q ss_pred CCccccceEEEEEcCCCCEEEEEe-CCCcEEEEECCC
Q 004468 275 HGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNH 310 (751)
Q Consensus 275 ~g~~~~~vt~v~fspdg~~Ll~~s-~d~~I~lwdl~~ 310 (751)
........+.|+|+|+++.|++++ ..+.|++.++..
T Consensus 201 ~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 201 GFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp TCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred cccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 001112478999999998776655 578999998876
No 221
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.43 E-value=4.5e-06 Score=89.19 Aligned_cols=251 Identities=8% Similarity=0.021 Sum_probs=146.1
Q ss_pred EEECCCCCEEEEEeC-----CCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE----------CCCcEE
Q 004468 56 ISWNSKGSLLISGSD-----DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVR 120 (751)
Q Consensus 56 l~~s~dg~~LaSgs~-----Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs----------~Dg~V~ 120 (751)
....|+++.+..... ++.|.+.|..+++.+..+..+.. + . ++++|+ +++++.+. .++.|.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spD--G~~lyVan~~~~r~~~G~~~~~Vs 112 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADD--GSFIAHASTVFSRIARGERTDYVE 112 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C-E-EEECTT--SSCEEEEEEEEEETTEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C-c-EEECCC--CCEEEEEcccccccccCCCCCEEE
Confidence 345789988777765 67999999999999999955444 3 4 999999 77776654 467899
Q ss_pred EEECCCCCCCCCCCCCCCCceeeccc-------CCceeEEEEecCCCCEEEEEe--CCCcEEEEecCCCCCCCCCCCC--
Q 004468 121 LFNLSRFSGRGLDDNAITPSALYQCH-------TRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQGSSCPPAGSS-- 189 (751)
Q Consensus 121 vwd~~~~~~~~~~~~~~~~~~~~~~h-------~~~V~~l~~sp~~~~~l~s~s--~Dg~I~iwDlr~~~~~~~~~~~-- 189 (751)
+||..+. +.+..+.-. ......++|+|+ ++.++.+. .+++|.++|+.+.+........
T Consensus 113 viD~~t~----------~v~~~I~v~~g~r~~~g~~P~~~a~spD-Gk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~ 181 (386)
T 3sjl_D 113 VFDPVTL----------LPTADIELPDAPRFLVGTYPWMTSLTPD-GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC 181 (386)
T ss_dssp EECTTTC----------CEEEEEEETTCCCCCBSCCGGGEEECTT-SSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE
T ss_pred EEECCCC----------eEEEEEECCCccccccCCCCceEEEcCC-CCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc
Confidence 9999874 334444211 124567999995 55555554 3689999999998754221110
Q ss_pred --------------CCccceEEEeccc-Cceeccc--CCCCCccce-EEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC-
Q 004468 190 --------------HQECRNILLDLRC-GAKRSLA--DPPKQTLSL-KSCDISSTRPHLLLVGGSDAFARLYDRRMLPP- 250 (751)
Q Consensus 190 --------------~~~~~~~l~~~~~-~~~~~~~--~~~~~~~~v-~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~- 250 (751)
..+....++++.. +...... ........+ ....|.+.++++++ .+.++.|.+.|......
T Consensus 182 ~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~ 260 (386)
T 3sjl_D 182 YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAK 260 (386)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCE
T ss_pred ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcce
Confidence 0111223333333 2221100 000001111 12355433555544 55589999999875431
Q ss_pred -ccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCCcceeeee
Q 004468 251 -LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----------GEHVYLMDVNHAGGRAMRYT 319 (751)
Q Consensus 251 -~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~----------d~~I~lwdl~~~~~~~~~~~ 319 (751)
+..+ ..+...... .+-.......++++|+++.|++... .+.|.++|+.+.+. ...+.
T Consensus 261 v~~~~----------~~~~~~~~~-~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv-~~~i~ 328 (386)
T 3sjl_D 261 FLPAV----------EALTEAERA-DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER-LAKFE 328 (386)
T ss_dssp ECCCE----------ESSCHHHHH-TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE-EEEEE
T ss_pred eecce----------ecccccccc-ccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE-EEEEE
Confidence 1110 000000000 0000011334778999999988764 35799999999653 33444
Q ss_pred cCCCceeEEeCCCCCC
Q 004468 320 VGDASKIMSFTPTLNG 335 (751)
Q Consensus 320 ~~~~~~~~~~sp~~~~ 335 (751)
.+..+..+.++|+.+.
T Consensus 329 vg~~~~~lavs~D~~~ 344 (386)
T 3sjl_D 329 MGHEIDSINVSQDEKP 344 (386)
T ss_dssp EEEEECEEEECSSSSC
T ss_pred CCCCcceEEECCCCCe
Confidence 4556778999998763
No 222
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.43 E-value=5.7e-06 Score=87.79 Aligned_cols=222 Identities=9% Similarity=0.004 Sum_probs=127.7
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeC-----CCcEEEEeCCCCeEEEEecc-----cCCcceEEEEEecCCCCcEEEEEE--
Q 004468 47 EGHQGCVNAISWNSKGSLLISGSD-----DTHINVWSYSSRKLLHSIET-----GHSANVFCTKFVPETSDELVVSGA-- 114 (751)
Q Consensus 47 ~gH~~~V~~l~~s~dg~~LaSgs~-----Dg~I~IWd~~~~~~~~~l~~-----~h~~~V~~v~fsp~s~~~~l~sgs-- 114 (751)
.+|-..+..|+|+++|+++++-.. +..|.+||+.+++.+..+.. .+...+..+++.|+. +..+++-.
T Consensus 63 ~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~-g~~yvtd~~~ 141 (343)
T 2qe8_A 63 IITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIH-NFVYISDPAP 141 (343)
T ss_dssp CCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTT-TEEEEEECCS
T ss_pred ccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCC-CEEEEEcCcc
Confidence 356678999999999987776644 57899999999987766632 123457899999863 45566665
Q ss_pred -CCCcEEEEECCCCCCCCCCCC--CCCC---ceeecc--------------cCCceeEEEEecCCCCEEEEEeCCC-cEE
Q 004468 115 -GDAEVRLFNLSRFSGRGLDDN--AITP---SALYQC--------------HTRRVKKLAVEVGNPHVVWSASEDG-TLR 173 (751)
Q Consensus 115 -~Dg~V~vwd~~~~~~~~~~~~--~~~~---~~~~~~--------------h~~~V~~l~~sp~~~~~l~s~s~Dg-~I~ 173 (751)
.++.|.+||+..+........ ...+ .....+ ....+..|+|+| +++.|+.+..++ .|.
T Consensus 142 ~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~~~l~ 220 (343)
T 2qe8_A 142 DDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYLSPMHSTSMY 220 (343)
T ss_dssp GGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT-TSCEEEEEESSCSEEE
T ss_pred CCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEecc-CCCEEEEEeCCCCeEE
Confidence 688999999975421110000 0000 000000 012468899999 556666665555 454
Q ss_pred EEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccc
Q 004468 174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253 (751)
Q Consensus 174 iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~ 253 (751)
.++........ .........+. ..++......++++++ ++++++...++.|.+||...++..
T Consensus 221 ~~~~~~~~~~~---~~~~~~~~~~~------------~~g~~g~pdgia~d~~-G~l~va~~~~~~V~~~d~~~G~~~-- 282 (343)
T 2qe8_A 221 RIKSADLSNLQ---LTDAELGSKIE------------RYSEKPICDGISIDKD-HNIYVGDLAHSAIGVITSADRAYK-- 282 (343)
T ss_dssp EEEHHHHTCTT---CCHHHHHTTCE------------EEEECCSCSCEEECTT-CCEEEEEGGGTEEEEEETTTTEEE--
T ss_pred EEEHHHhcCCC---CChhhhhcceE------------ecccCCCCceEEECCC-CCEEEEccCCCeEEEEECCCCCEE--
Confidence 44432111000 00000000000 0001123456889995 788888889999999998433210
Q ss_pred cCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 004468 254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLM 306 (751)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lw 306 (751)
.... ......+++++|.++|+.+++.+..+.+.+|
T Consensus 283 ------------~~~~------~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 283 ------------LLVT------DEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp ------------EEEE------CGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred ------------EEEE------CCceecCCeeEECCCCcEEEEeCcccccccc
Confidence 0000 0011248999999999877777655544444
No 223
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.39 E-value=7.4e-06 Score=85.22 Aligned_cols=199 Identities=9% Similarity=0.052 Sum_probs=119.9
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEec--ccC-CcceEEEEEecCCCCcEEEE----EEC-
Q 004468 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE--TGH-SANVFCTKFVPETSDELVVS----GAG- 115 (751)
Q Consensus 44 ~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~--~~h-~~~V~~v~fsp~s~~~~l~s----gs~- 115 (751)
..+..+.+.++.++|+++|+++++...++.|.+|+.. ++...... .+. ...+.++++.|+ |.+++| |..
T Consensus 79 ~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~d--G~l~~td~~~g~~~ 155 (305)
T 3dr2_A 79 DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARD--GAIWFTDPPFGLRK 155 (305)
T ss_dssp EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTT--SCEEEECCSGGGSC
T ss_pred EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCC--CCEEEeCcCCCccc
Confidence 4555677889999999999987777677889999986 54322210 111 234778999998 788886 332
Q ss_pred ------------CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC------CcEEEEec
Q 004468 116 ------------DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED------GTLRQHDF 177 (751)
Q Consensus 116 ------------Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D------g~I~iwDl 177 (751)
.+.|..||...+. +..+. .......++|+| +++.|+.+... +.|.+||+
T Consensus 156 ~~~~~~~~~~~~~~~v~~~d~~~g~-----------~~~~~-~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~ 222 (305)
T 3dr2_A 156 PSQGCPADPELAHHSVYRLPPDGSP-----------LQRMA-DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITAFAW 222 (305)
T ss_dssp GGGSCCCCCSSSCEEEEEECSSSCC-----------CEEEE-EESSEEEEEECT-TSSEEEEEECCC---CCCEEEEEEE
T ss_pred cccccccccccCCCeEEEEcCCCCc-----------EEEEe-cCCCCcceEEcC-CCCEEEEEecCCcCCCCCEEEEEEe
Confidence 2456666664321 22222 445668899999 45544444443 78999998
Q ss_pred CCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCC
Q 004468 178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR 257 (751)
Q Consensus 178 r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~ 257 (751)
.... . ....++... .......+++.++ +++ .++..+ .|.+|+.. ++.+..+.
T Consensus 223 ~~~~-l--------~~~~~~~~~-------------~~~~pdgi~~d~~-G~l-wv~~~~-gv~~~~~~-g~~~~~~~-- 274 (305)
T 3dr2_A 223 RDGA-L--------HDRRHFASV-------------PDGLPDGFCVDRG-GWL-WSSSGT-GVCVFDSD-GQLLGHIP-- 274 (305)
T ss_dssp ETTE-E--------EEEEEEECC-------------SSSCCCSEEECTT-SCE-EECCSS-EEEEECTT-SCEEEEEE--
T ss_pred cCCC-c--------cCCeEEEEC-------------CCCCCCeEEECCC-CCE-EEecCC-cEEEECCC-CCEEEEEE--
Confidence 7542 0 001111111 1122446788885 564 444444 49999974 32221110
Q ss_pred CCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004468 258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD 307 (751)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwd 307 (751)
. .. .+++++|+|+++.|++++.+ .++.++
T Consensus 275 --------------~----~~--~~~~~~f~~d~~~L~it~~~-~l~~~~ 303 (305)
T 3dr2_A 275 --------------T----PG--TASNCTFDQAQQRLFITGGP-CLWMLP 303 (305)
T ss_dssp --------------C----SS--CCCEEEECTTSCEEEEEETT-EEEEEE
T ss_pred --------------C----CC--ceeEEEEeCCCCEEEEEcCC-eEEEEE
Confidence 0 11 37789999999999988875 444444
No 224
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.34 E-value=0.00011 Score=74.61 Aligned_cols=221 Identities=7% Similarity=0.018 Sum_probs=131.9
Q ss_pred CcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004468 51 GCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (751)
Q Consensus 51 ~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~ 129 (751)
..+..++|++++. ++++-...+.|.++++........+ .........+++.|+. +.++++-...+.|.++++....
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~-~~~~~~p~~ia~d~~~-~~lyv~d~~~~~I~~~~~~g~~- 112 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-RQDLGSPEGIALDHLG-RTIFWTDSQLDRIEVAKMDGTQ- 112 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-CTTCCCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCS-
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE-ECCCCCccEEEEEecC-CeEEEEECCCCEEEEEEcCCCC-
Confidence 4578999999655 5555556789999998765433333 2333568899999973 4566666677899999987421
Q ss_pred CCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeC--CCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceec
Q 004468 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (751)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~--Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (751)
..............++++|+++.++++... .+.|..+++..... ..+..
T Consensus 113 ---------~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~------------~~~~~-------- 163 (267)
T 1npe_A 113 ---------RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR------------RILAQ-------- 163 (267)
T ss_dssp ---------CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC------------EEEEC--------
T ss_pred ---------EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc------------EEEEE--------
Confidence 111122122457899999966677766654 46888888754220 11110
Q ss_pred ccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEE
Q 004468 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (751)
Q Consensus 208 ~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~f 287 (751)
........++++|+++.++++-...+.|.++|...... ..+.. . . . ....+++
T Consensus 164 -----~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~--------------~~~~~----~-~--~-~P~gi~~ 216 (267)
T 1npe_A 164 -----DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR--------------RKVLE----G-L--Q-YPFAVTS 216 (267)
T ss_dssp -----TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE--------------EEEEE----C-C--C-SEEEEEE
T ss_pred -----CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce--------------EEEec----C-C--C-CceEEEE
Confidence 01235678999996556666666778999999864211 01100 0 0 1 2456665
Q ss_pred cCCCCEEEE-EeCCCcEEEEECCCCCcceeeeecC-CCceeEEeCCC
Q 004468 288 SPNGEEVLL-SYSGEHVYLMDVNHAGGRAMRYTVG-DASKIMSFTPT 332 (751)
Q Consensus 288 spdg~~Ll~-~s~d~~I~lwdl~~~~~~~~~~~~~-~~~~~~~~sp~ 332 (751)
. +..|++ ....+.|+.+|..+++......... ..+..+++.|+
T Consensus 217 d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 217 Y--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp E--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred e--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCc
Confidence 4 445554 4457899999998864333322111 12445555554
No 225
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.29 E-value=2.2e-05 Score=91.76 Aligned_cols=199 Identities=13% Similarity=0.127 Sum_probs=123.5
Q ss_pred EEEEECCCCCEEEEEeCCCc-------------EEEEeCCCCe----EEEEeccc-CCcceEEEEEecCCCCcEEE-EEE
Q 004468 54 NAISWNSKGSLLISGSDDTH-------------INVWSYSSRK----LLHSIETG-HSANVFCTKFVPETSDELVV-SGA 114 (751)
Q Consensus 54 ~~l~~s~dg~~LaSgs~Dg~-------------I~IWd~~~~~----~~~~l~~~-h~~~V~~v~fsp~s~~~~l~-sgs 114 (751)
..++|+ ||+.|+.++.|.. |.+|++.+.. ++... .. |...+.++.|+|+ |++|+ +.+
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~-~~~~~~~~~~~~~SpD--g~~l~~~~~ 253 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA-IPAQHHRYVGATVTED--DRFLLISAA 253 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESC-SGGGCCSEEEEEECTT--SCEEEEEEE
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEec-CCCCCeEEEEEEEcCC--CCEEEEEEc
Confidence 467899 9999999988854 9999987654 23222 33 5556889999999 67665 433
Q ss_pred C---CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC---CcEEEEecCCCCCCCCCCC
Q 004468 115 G---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED---GTLRQHDFRQGSSCPPAGS 188 (751)
Q Consensus 115 ~---Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D---g~I~iwDlr~~~~~~~~~~ 188 (751)
. +..|+++|+..+.+ ....+..+...+... |+++++.+++.+..+ +.|..+|+.++...
T Consensus 254 ~~~~~~~i~~~d~~~~~~---------~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~----- 318 (693)
T 3iuj_A 254 NSTSGNRLYVKDLSQENA---------PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA----- 318 (693)
T ss_dssp SSSSCCEEEEEETTSTTC---------CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-----
T ss_pred cCCCCcEEEEEECCCCCC---------ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-----
Confidence 2 25899999976421 245556666666555 666566676666554 57888888775410
Q ss_pred CCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC--eEEEEeCCCCCCccccCCCCCCCCcccc
Q 004468 189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA--FARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (751)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~--~IriwD~~~~~~~~~~~~~~~~~~~~~~ 266 (751)
.. ..+.. +...+. .|++++..++++...++ .|++||+.... ...+
T Consensus 319 ---~~-~~l~~--------------~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l------------ 365 (693)
T 3iuj_A 319 ---HW-RDLIP--------------ERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREV------------ 365 (693)
T ss_dssp ---GC-EEEEC--------------CCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEE------------
T ss_pred ---cc-EEEec--------------CCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEe------------
Confidence 00 11110 111222 77885434444444554 68888876321 1110
Q ss_pred ccccccccCCccccceEEEEEcCCCCEEEEEeCC----CcEEEEECCCCC
Q 004468 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG----EHVYLMDVNHAG 312 (751)
Q Consensus 267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d----~~I~lwdl~~~~ 312 (751)
.+. . ...+..+.++++++.|+....+ +.|+.||+.++.
T Consensus 366 ----~~p---~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 366 ----ALP---G-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp ----CCS---S-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred ----ecC---C-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 000 1 1136778889999888776655 899999998754
No 226
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.26 E-value=4.6e-05 Score=76.24 Aligned_cols=213 Identities=11% Similarity=0.023 Sum_probs=130.0
Q ss_pred ccccccEEeccCCCc--EEEEEECCCCCEEEEEeCCC--cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEE
Q 004468 38 RRLSQERELEGHQGC--VNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG 113 (751)
Q Consensus 38 ~~~~~~~~L~gH~~~--V~~l~~s~dg~~LaSgs~Dg--~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sg 113 (751)
...+.++++ .|... ...|.|+ ++.++.+.+.+| .|+++|+.+++.+..+..+ ...+.....+.. +.+.+..
T Consensus 29 ~~~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~--~~~FgeGit~~g-~~ly~lt 103 (262)
T 3nol_A 29 YDYQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG--KRYFGEGISDWK-DKIVGLT 103 (262)
T ss_dssp EEEEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC--TTCCEEEEEEET-TEEEEEE
T ss_pred cceEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC--CccceeEEEEeC-CEEEEEE
Confidence 345666777 45543 5789999 788888888876 8999999999999888432 345554444442 3555566
Q ss_pred ECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCcc
Q 004468 114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (751)
Q Consensus 114 s~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~ 193 (751)
-.++.+.++|..+. +.+.++.--. ....+++++..+++|- .++.|.++|..+.+...
T Consensus 104 w~~~~v~v~D~~t~----------~~~~ti~~~~---eG~glt~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~--------- 160 (262)
T 3nol_A 104 WKNGLGFVWNIRNL----------RQVRSFNYDG---EGWGLTHNDQYLIMSD-GTPVLRFLDPESLTPVR--------- 160 (262)
T ss_dssp SSSSEEEEEETTTC----------CEEEEEECSS---CCCCEEECSSCEEECC-SSSEEEEECTTTCSEEE---------
T ss_pred eeCCEEEEEECccC----------cEEEEEECCC---CceEEecCCCEEEEEC-CCCeEEEEcCCCCeEEE---------
Confidence 67899999999875 4455554322 2233345455566554 47889999998865320
Q ss_pred ceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccc
Q 004468 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (751)
Q Consensus 194 ~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (751)
.+ ....+ ......++.+.|. ++++++..-.+..|.+.|.++++.+..+......+.+. .
T Consensus 161 -~I--~V~~~--------g~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~----~---- 219 (262)
T 3nol_A 161 -TI--TVTAH--------GEELPELNELEWV--DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAG----P---- 219 (262)
T ss_dssp -EE--ECEET--------TEECCCEEEEEEE--TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSC----S----
T ss_pred -EE--EeccC--------CccccccceeEEE--CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccc----c----
Confidence 00 00000 0011234556665 46666666578899999999988655443211000000 0
Q ss_pred cCCccccceEEEEEcCCCCEEEEEeCC
Q 004468 274 EHGRSSLHLTHVTFSPNGEEVLLSYSG 300 (751)
Q Consensus 274 ~~g~~~~~vt~v~fspdg~~Ll~~s~d 300 (751)
........+.|+|+|+++.|++.+..
T Consensus 220 -~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 220 -LPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp -CCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred -ccCcCCceEEEEEcCCCCEEEEECCC
Confidence 00111247899999999988888763
No 227
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.22 E-value=5.8e-05 Score=81.32 Aligned_cols=250 Identities=12% Similarity=0.043 Sum_probs=139.9
Q ss_pred hhccCcCcccccccccchhh--hccccccEEec------cC-CCcEEEEEECCCCCEEEEEeCC------CcEEEEeCCC
Q 004468 17 TRHTDTRPDVNHSLQMHSSL--VRRLSQERELE------GH-QGCVNAISWNSKGSLLISGSDD------THINVWSYSS 81 (751)
Q Consensus 17 ~r~~~~~~~~~~~l~~~~~~--i~~~~~~~~L~------gH-~~~V~~l~~s~dg~~LaSgs~D------g~I~IWd~~~ 81 (751)
+|.+....-...++.+.+.. -.+.+++++++ .. ...-..+..+|+| +++++..+ +.|.+.|..+
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T 173 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS 173 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC
Confidence 34443333334555555532 33446666663 11 1245678889999 88887666 7899999999
Q ss_pred CeEEEEeccc-CC-cceEEEEEecCCCCcEEEEEE-------------------CCCcEEEEECCCCCCCCCCCCCCCCc
Q 004468 82 RKLLHSIETG-HS-ANVFCTKFVPETSDELVVSGA-------------------GDAEVRLFNLSRFSGRGLDDNAITPS 140 (751)
Q Consensus 82 ~~~~~~l~~~-h~-~~V~~v~fsp~s~~~~l~sgs-------------------~Dg~V~vwd~~~~~~~~~~~~~~~~~ 140 (751)
++.+.++..+ .. .--..+.|+|+ ++.+++.. .+.+|.+||+.+. +.+
T Consensus 174 ~~v~~~~~~~~~~~~~~Yd~~~~p~--~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~----------k~~ 241 (462)
T 2ece_A 174 FEPLGKWEIDRGDQYLAYDFWWNLP--NEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR----------KRI 241 (462)
T ss_dssp CCEEEECCSBCTTCCCCCCEEEETT--TTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT----------EEE
T ss_pred CeEEEEEccCCCCccccceEEECCC--CCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC----------cEe
Confidence 9999888433 22 22345888999 67888774 4789999999863 334
Q ss_pred eeeccc--CCceeEEEE--ecCCCCEEEEEe-----CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCcee-cccC
Q 004468 141 ALYQCH--TRRVKKLAV--EVGNPHVVWSAS-----EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR-SLAD 210 (751)
Q Consensus 141 ~~~~~h--~~~V~~l~~--sp~~~~~l~s~s-----~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~ 210 (751)
.++..- ......|.| +|++...++++- .+++|.+|....+. .. ...++++...... .+..
T Consensus 242 ~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~---------~~-~~~vIdi~~~~v~~~lp~ 311 (462)
T 2ece_A 242 HSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK---------WN-AEKVIEIPAEPLEGNLPE 311 (462)
T ss_dssp EEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE---------EE-EEEEEEECCEECCSSCCG
T ss_pred eEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc---------ee-EEEEEeCCCccccccccc
Confidence 444431 133456666 886555666666 77899888765422 00 1112222111100 0100
Q ss_pred CCC----CccceEEEEEeCCCCcEEEE-EeCCCeEEEEeCCCCCC---ccccCCCCCCCCccccccccccccCCc-cccc
Q 004468 211 PPK----QTLSLKSCDISSTRPHLLLV-GGSDAFARLYDRRMLPP---LTSCQKRMSPPPCVNYFCPMHLSEHGR-SSLH 281 (751)
Q Consensus 211 ~~~----~~~~v~~i~~sp~~~~~l~s-gs~D~~IriwD~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~ 281 (751)
.+. .......|.++|+ +++|.+ .-..+.|.+||+..... +..+.... .. ..+.+. .|. -...
T Consensus 312 ~~~~f~~~~~~pa~I~lS~D-GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG----~~--~~~~~~--~G~~~~gg 382 (462)
T 2ece_A 312 ILKPFKAVPPLVTDIDISLD-DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGG----IF--HRADHP--AGHKLTGA 382 (462)
T ss_dssp GGGGGTEECCCCCCEEECTT-SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBT----TT--TCBCCT--TSCCCCSC
T ss_pred cccccccCCCceeEEEECCC-CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCC----ee--cccccc--ccccCCCC
Confidence 000 0134678999996 455555 45578999999863321 11111000 00 000000 000 0012
Q ss_pred eEEEEEcCCCCEEEEEe
Q 004468 282 LTHVTFSPNGEEVLLSY 298 (751)
Q Consensus 282 vt~v~fspdg~~Ll~~s 298 (751)
...+.++|||++|+++.
T Consensus 383 Pr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 383 PQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCEEECTTSSEEEEEC
T ss_pred CCEEEEcCCCCEEEEEc
Confidence 46789999999999988
No 228
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.20 E-value=0.00011 Score=79.22 Aligned_cols=212 Identities=14% Similarity=0.131 Sum_probs=119.3
Q ss_pred CCCCEEE-EEeCCCcEEEEeCCCC----eEEEEec-------ccCCcceEEEEEecCCCCcEEEEEECC------CcEEE
Q 004468 60 SKGSLLI-SGSDDTHINVWSYSSR----KLLHSIE-------TGHSANVFCTKFVPETSDELVVSGAGD------AEVRL 121 (751)
Q Consensus 60 ~dg~~La-Sgs~Dg~I~IWd~~~~----~~~~~l~-------~~h~~~V~~v~fsp~s~~~~l~sgs~D------g~V~v 121 (751)
.++++|. +|-.+.+|.|.|+.+. +...++. .+ ...-..+..+|+ | +++++..+ +.|.+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g-~s~Ph~~~~~pd--G-i~Vs~~g~~~g~~~g~v~v 168 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSG-YSRLHTVHCGPD--A-IYISALGNEEGEGPGGILM 168 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHC-EEEEEEEEECSS--C-EEEEEEEETTSCSCCEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccC-CCcccceeECCC--e-EEEEcCCCcCCCCCCeEEE
Confidence 7777665 5567889999998755 5555551 11 123456777888 7 77777766 78999
Q ss_pred EECCCCCCCCCCCCCCCCceeeccc--C-CceeEEEEecCCCCEEEEEe-------------------CCCcEEEEecCC
Q 004468 122 FNLSRFSGRGLDDNAITPSALYQCH--T-RRVKKLAVEVGNPHVVWSAS-------------------EDGTLRQHDFRQ 179 (751)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h--~-~~V~~l~~sp~~~~~l~s~s-------------------~Dg~I~iwDlr~ 179 (751)
.|..+. +.+..+..- . ..-+.+.|+| +.+.+++.. .+.+|.+||+.+
T Consensus 169 lD~~T~----------~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~ 237 (462)
T 2ece_A 169 LDHYSF----------EPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK 237 (462)
T ss_dssp ECTTTC----------CEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT
T ss_pred EECCCC----------eEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC
Confidence 999865 334444321 1 2235688899 556776663 368999999987
Q ss_pred CCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEE--eCCCCcEEEEEe------CCCeEEEEeCCCCCCc
Q 004468 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI--SSTRPHLLLVGG------SDAFARLYDRRMLPPL 251 (751)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~--sp~~~~~l~sgs------~D~~IriwD~~~~~~~ 251 (751)
++.. .-+++. . .......+.| +|+ ++++.+++ .++.|.+|....+. .
T Consensus 238 ~k~~------------~tI~vg----------~-~g~~P~~i~f~~~Pd-g~~aYV~~e~~~~~Lss~V~v~~~d~g~-~ 292 (462)
T 2ece_A 238 RKRI------------HSLTLG----------E-ENRMALELRPLHDPT-KLMGFINMVVSLKDLSSSIWLWFYEDGK-W 292 (462)
T ss_dssp TEEE------------EEEESC----------T-TEEEEEEEEECSSTT-CCEEEEEEEEETTTCCEEEEEEEEETTE-E
T ss_pred CcEe------------eEEecC----------C-CCCccceeEeeECCC-CCEEEEEEeeeccCCCceEEEEEecCCc-e
Confidence 5421 011110 0 1122334444 996 55555544 67788877654321 0
Q ss_pred cccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC-CCcEEEEECCCC
Q 004468 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHA 311 (751)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~~I~lwdl~~~ 311 (751)
...+.-..+...+....+.-....+........|.+||||++|.++.. .+.|.+||+...
T Consensus 293 ~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 293 NAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp EEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred eEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 000000000000000000000000000113678999999999988776 789999999753
No 229
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.17 E-value=2.9e-05 Score=84.32 Aligned_cols=106 Identities=11% Similarity=0.029 Sum_probs=74.4
Q ss_pred CCCCEEEEEeC-C----CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE----------CCCcEEEEEC
Q 004468 60 SKGSLLISGSD-D----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVRLFNL 124 (751)
Q Consensus 60 ~dg~~LaSgs~-D----g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs----------~Dg~V~vwd~ 124 (751)
++++.+..... + +.|.++|..+++.+.++..+. .+ .++++|+ +++|+.+. .++.|.++|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-~P--gia~SpD--gk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-LP--HPVAAED--GSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECTT--SSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-CC--ceEECCC--CCEEEEEeccccccccCCCCCEEEEEEC
Confidence 46665555543 3 699999999999999995554 34 8999999 67666654 4679999999
Q ss_pred CCCCCCCCCCCCCCCceeeccc-------CCceeEEEEecCCCCEEEEEeC--CCcEEEEecCCCC
Q 004468 125 SRFSGRGLDDNAITPSALYQCH-------TRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGS 181 (751)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h-------~~~V~~l~~sp~~~~~l~s~s~--Dg~I~iwDlr~~~ 181 (751)
.+. +.+..+.-- ......++|+|+ +++++.+.. +++|.+.|+.+.+
T Consensus 157 ~t~----------~vv~~I~v~g~~r~~~g~~P~~~~~spD-Gk~lyV~n~~~~~~VsVID~~t~k 211 (426)
T 3c75_H 157 VTF----------LPIADIELPDAPRFLVGTYQWMNALTPD-NKNLLFYQFSPAPAVGVVDLEGKT 211 (426)
T ss_dssp TTC----------CEEEEEEETTCCCCCBSCCGGGSEECTT-SSEEEEEECSSSCEEEEEETTTTE
T ss_pred CCC----------cEEEEEECCCccccccCCCcceEEEcCC-CCEEEEEecCCCCeEEEEECCCCe
Confidence 874 334433211 234567899994 555555553 6889999999876
No 230
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.08 E-value=0.00054 Score=67.84 Aligned_cols=211 Identities=13% Similarity=0.119 Sum_probs=128.2
Q ss_pred ccccEEeccCCC--cEEEEEECCCCCEEEEEeCCC--cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC
Q 004468 40 LSQERELEGHQG--CVNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (751)
Q Consensus 40 ~~~~~~L~gH~~--~V~~l~~s~dg~~LaSgs~Dg--~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~ 115 (751)
.+.++++ .|.. -+..|.|+. +.++.|.+.+| .|+++|+.+++.+..+... ...+.....+.. +.+++..-.
T Consensus 9 ~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~--~~~fgeGi~~~~-~~ly~ltw~ 83 (243)
T 3mbr_X 9 YRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVP--PPYFGAGIVAWR-DRLIQLTWR 83 (243)
T ss_dssp EEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECC--TTCCEEEEEEET-TEEEEEESS
T ss_pred eEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCC--CCcceeEEEEeC-CEEEEEEee
Confidence 4556666 5654 477899986 77788888764 8999999999998887332 233433333332 456666677
Q ss_pred CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccce
Q 004468 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (751)
Q Consensus 116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~ 195 (751)
++.+.++|..+. +.+.++.... .=..++ +++..+++|- .++.|.++|..+.+...
T Consensus 84 ~~~v~v~D~~tl----------~~~~ti~~~~-~Gwglt--~dg~~L~vSd-gs~~l~~iDp~t~~~~~----------- 138 (243)
T 3mbr_X 84 NHEGFVYDLATL----------TPRARFRYPG-EGWALT--SDDSHLYMSD-GTAVIRKLDPDTLQQVG----------- 138 (243)
T ss_dssp SSEEEEEETTTT----------EEEEEEECSS-CCCEEE--ECSSCEEEEC-SSSEEEEECTTTCCEEE-----------
T ss_pred CCEEEEEECCcC----------cEEEEEeCCC-CceEEe--eCCCEEEEEC-CCCeEEEEeCCCCeEEE-----------
Confidence 999999999874 4455554322 223444 5455666665 47899999998865320
Q ss_pred EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccC
Q 004468 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (751)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (751)
-+.... .+.....++.+.+. ++++++..-.+..|.+.|.++++.+..+......+.... . .
T Consensus 139 -~I~V~~--------~g~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~------~--~ 199 (243)
T 3mbr_X 139 -SIKVTA--------GGRPLDNLNELEWV--NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADA------L--T 199 (243)
T ss_dssp -EEECEE--------TTEECCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTS------C--C
T ss_pred -EEEEcc--------CCcccccceeeEEe--CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccccc------c--c
Confidence 011100 00011234556665 456665555788999999999886554432211110000 0 0
Q ss_pred CccccceEEEEEcCCCCEEEEEeC
Q 004468 276 GRSSLHLTHVTFSPNGEEVLLSYS 299 (751)
Q Consensus 276 g~~~~~vt~v~fspdg~~Ll~~s~ 299 (751)
.......+.|+++|+++.|++.+.
T Consensus 200 ~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 200 DSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp CTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCcCCceEEEEEcCCCCEEEEECC
Confidence 011124789999999888887775
No 231
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.07 E-value=0.00079 Score=67.54 Aligned_cols=226 Identities=11% Similarity=0.137 Sum_probs=138.1
Q ss_pred EEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004468 44 RELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (751)
Q Consensus 44 ~~L~gH~~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw 122 (751)
+.|.|-.+.+..|+|+|++. ++|+...++.|...|.. ++.+..+..+-....-.|++.++ +.++++.-.++.+.++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~--g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGD--NQFVISDERDYAIYVI 96 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECST--TEEEEEETTTTEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCC--CEEEEEECCCCcEEEE
Confidence 56778778999999999765 55557788899999988 88887774343456888888887 6777776678889999
Q ss_pred ECCCCCCCCCCCCCCCCceee------cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004468 123 NLSRFSGRGLDDNAITPSALY------QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (751)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~------~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~ 196 (751)
++..... . ..+... ...+...-.|+|.|.+ +.|+++.+.....+|.+.. .. ......+
T Consensus 97 ~v~~~~~-i------~~~~~~~~~~~~~~~N~g~EGLA~d~~~-~~L~va~E~~p~~i~~~~g-~~-------~~~~l~i 160 (255)
T 3qqz_A 97 SLTPNSE-V------KILKKIKIPLQESPTNCGFEGLAYSRQD-HTFWFFKEKNPIEVYKVNG-LL-------SSNELHI 160 (255)
T ss_dssp EECTTCC-E------EEEEEEECCCSSCCCSSCCEEEEEETTT-TEEEEEEESSSEEEEEEES-TT-------CSSCCEE
T ss_pred EcCCCCe-e------eeeeeeccccccccccCCcceEEEeCCC-CEEEEEECcCCceEEEEcc-cc-------cCCceee
Confidence 8875321 0 001111 1234556899999954 4455555554555555541 10 0011122
Q ss_pred EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004468 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (751)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (751)
+.+... ........+.+++++|..+++++.......|.++|... +.+..+... +.... -.
T Consensus 161 ~~~~~~-------~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~-----------~g~~~-l~ 220 (255)
T 3qqz_A 161 SKDKAL-------QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLT-----------KGSRG-LS 220 (255)
T ss_dssp EECHHH-------HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-CEEEEEECS-----------TTGGG-CS
T ss_pred ecchhh-------ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcC-----------CccCC-cc
Confidence 211100 00012235689999998888899988999999999763 332222110 00000 00
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004468 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (751)
Q Consensus 277 ~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~ 309 (751)
+.-...-.|+|.++|+ |++.+..+.+|.|.-.
T Consensus 221 ~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 221 HNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp SCCCSEEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred cccCCCCeeEECCCCC-EEEEcCCceEEEEEec
Confidence 0011367899999998 5555777788888643
No 232
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.04 E-value=3.9e-05 Score=68.28 Aligned_cols=109 Identities=20% Similarity=0.176 Sum_probs=95.0
Q ss_pred CcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCC
Q 004468 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (751)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~ 438 (751)
.|+..+.....++..+..|+ |..|+..|+++|...+.. ...|.+++.++...+ +...|+.++.+++.++|
T Consensus 9 nP~~a~~~~~~G~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p 78 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGD-YPTAMRHYNEAVKRDPEN------AILYSNRAACLTKLM---EFQRALDDCDTCIRLDS 78 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHhhHHHhhc---cHHHHHHHHHHHHHhhh
Confidence 45666777888899999998 999999999999877654 457889999988765 45679999999999999
Q ss_pred CCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468 439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (751)
Q Consensus 439 ~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~ 477 (751)
.+.++++.++.++..++++.+|..+++......|.+...
T Consensus 79 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a 117 (126)
T 4gco_A 79 KFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117 (126)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHH
Confidence 999999999999999999999999999999999987654
No 233
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.03 E-value=0.00022 Score=71.31 Aligned_cols=211 Identities=9% Similarity=0.006 Sum_probs=127.8
Q ss_pred cccccEEeccCCC--cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC
Q 004468 39 RLSQERELEGHQG--CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (751)
Q Consensus 39 ~~~~~~~L~gH~~--~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D 116 (751)
..+.++++ .|.. -...|.|+ ++.+..+.+.+|.|+++|+.+++.+..+ .. ...+.....+.. +.+++..-.+
T Consensus 42 ~~~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~--~~~FgeGit~~g-~~Ly~ltw~~ 115 (268)
T 3nok_A 42 VAHIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL--GNIFAEGLASDG-ERLYQLTWTE 115 (268)
T ss_dssp EEEEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC--TTCCEEEEEECS-SCEEEEESSS
T ss_pred ceEEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC--CCcceeEEEEeC-CEEEEEEccC
Confidence 33566666 3543 35789998 4788889999999999999999988877 33 234443333342 4666667789
Q ss_pred CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004468 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (751)
Q Consensus 117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~ 196 (751)
+.+.+||..+. +.+.++..- ..-..++ +++..++ .+..++.|.++|..+.+... .+
T Consensus 116 ~~v~V~D~~Tl----------~~~~ti~~~-~eGwGLt--~Dg~~L~-vSdGs~~l~~iDp~T~~v~~----------~I 171 (268)
T 3nok_A 116 GLLFTWSGMPP----------QRERTTRYS-GEGWGLC--YWNGKLV-RSDGGTMLTFHEPDGFALVG----------AV 171 (268)
T ss_dssp CEEEEEETTTT----------EEEEEEECS-SCCCCEE--EETTEEE-EECSSSEEEEECTTTCCEEE----------EE
T ss_pred CEEEEEECCcC----------cEEEEEeCC-CceeEEe--cCCCEEE-EECCCCEEEEEcCCCCeEEE----------EE
Confidence 99999999875 445555432 2223444 4344444 44568899999988865320 01
Q ss_pred EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004468 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (751)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (751)
.. ...+.....++.+.|. ++++++..-.+..|.+.|.++++.+..+.... ..+.......
T Consensus 172 --~V--------~~~g~~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~--------L~~~~~~~~~ 231 (268)
T 3nok_A 172 --QV--------KLRGQPVELINELECA--NGVIYANIWHSSDVLEIDPATGTVVGVIDASA--------LTRAVAGQVT 231 (268)
T ss_dssp --EC--------EETTEECCCEEEEEEE--TTEEEEEETTCSEEEEECTTTCBEEEEEECHH--------HHHHHTTTCC
T ss_pred --Ee--------CCCCcccccccccEEe--CCEEEEEECCCCeEEEEeCCCCcEEEEEECCC--------Cccccccccc
Confidence 00 0011112245667776 45666655578899999999987655442110 0000000000
Q ss_pred ccccceEEEEEcCCCCEEEEEeC
Q 004468 277 RSSLHLTHVTFSPNGEEVLLSYS 299 (751)
Q Consensus 277 ~~~~~vt~v~fspdg~~Ll~~s~ 299 (751)
......+.|+|+|+++.|++.+.
T Consensus 232 ~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 232 NPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp CTTCCEEEEEECTTTCCEEEEET
T ss_pred CcCCceEEEEEcCCCCEEEEeCC
Confidence 11124789999999887777664
No 234
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.95 E-value=8.3e-05 Score=82.91 Aligned_cols=241 Identities=7% Similarity=0.008 Sum_probs=138.1
Q ss_pred ccccccEEeccC-CCcEEEEEE-C-CCCCEEEEEe------------------CCCcEEEEeCCCCeEEEEecccCCcce
Q 004468 38 RRLSQERELEGH-QGCVNAISW-N-SKGSLLISGS------------------DDTHINVWSYSSRKLLHSIETGHSANV 96 (751)
Q Consensus 38 ~~~~~~~~L~gH-~~~V~~l~~-s-~dg~~LaSgs------------------~Dg~I~IWd~~~~~~~~~l~~~h~~~V 96 (751)
..+++.+.++-- ...+..+++ + |+++++..++ .++.|.+.|..+.+.+.++..+- +-
T Consensus 120 ~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg--~p 197 (595)
T 1fwx_A 120 DVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG--NL 197 (595)
T ss_dssp TTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS--CC
T ss_pred CCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC--Cc
Confidence 334445533321 235788998 5 8999998885 35679999999999988885432 45
Q ss_pred EEEEEecCCCCcEEEEEECCC--------------------------------------cEEEEECCCCCCCCCCCCCCC
Q 004468 97 FCTKFVPETSDELVVSGAGDA--------------------------------------EVRLFNLSRFSGRGLDDNAIT 138 (751)
Q Consensus 97 ~~v~fsp~s~~~~l~sgs~Dg--------------------------------------~V~vwd~~~~~~~~~~~~~~~ 138 (751)
.-++++|+ |+++++++.+. .|.|.|..+..+ .
T Consensus 198 d~~~~spd--Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~--------~ 267 (595)
T 1fwx_A 198 DNCDADYE--GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEAS--------S 267 (595)
T ss_dssp CCEEECSS--SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGC--------C
T ss_pred cceEECCC--CCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCC--------c
Confidence 67889998 78888777553 244555543100 1
Q ss_pred C-ceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccc
Q 004468 139 P-SALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS 217 (751)
Q Consensus 139 ~-~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 217 (751)
. +..+.. .....++.++|++..+++++..+.+|.++|+.+.+.... ..-.....++.... -...
T Consensus 268 ~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~--~~l~~~~~v~~~v~------------vG~g 332 (595)
T 1fwx_A 268 LFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFY--ENADPRSAVVAEPE------------LGLG 332 (595)
T ss_dssp SSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHH--SCCCGGGGEEECCB------------CCSC
T ss_pred eeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccc--cccCcccceEEEcC------------CCCC
Confidence 1 223322 234567899996666777777899999999986421000 00000001111111 1234
Q ss_pred eEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEE
Q 004468 218 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS 297 (751)
Q Consensus 218 v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~ 297 (751)
...++|+|+ ++..++.-.|+.|.+||+.... ..+.... ....+... +.+.. -||.. .-..++++|||++|++.
T Consensus 333 P~h~aF~~d-G~aY~t~~ldsqV~kwdi~~a~--~~~~g~~-~~~vi~ki-dV~yq-pGh~~-~~~g~t~~~DGk~l~~~ 405 (595)
T 1fwx_A 333 PLHTAFDGR-GNAYTSLFLDSQVVKWNIEDAI--RAYAGEK-VDPIKDKL-DVHYQ-PGHLK-TVMGETLDATNDWLVCL 405 (595)
T ss_dssp EEEEEECTT-SEEEEEETTTTEEEEEEHHHHH--HHHHTCS-CCCEEEEE-ECSSC-EEEEE-ETTTTSTTCCSSEEEEE
T ss_pred cceEEECCC-CeEEEEEecCCcEEEEEhhHhh--hhhcccc-cceeEEEe-ecccc-cccce-eccceEeCCCCCEEEEc
Confidence 678899996 5777788899999999987510 0000000 00011111 11110 01111 01234578999999988
Q ss_pred eC-C-CcE-----------EEEECCCCC
Q 004468 298 YS-G-EHV-----------YLMDVNHAG 312 (751)
Q Consensus 298 s~-d-~~I-----------~lwdl~~~~ 312 (751)
.. . ..+ .|+|+.+++
T Consensus 406 Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 406 SKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp ESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred CCCCccccccCCCCCCCcceEEEcCCCc
Confidence 75 2 344 899996644
No 235
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.93 E-value=0.0076 Score=63.65 Aligned_cols=208 Identities=8% Similarity=0.022 Sum_probs=131.3
Q ss_pred CcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004468 51 GCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (751)
Q Consensus 51 ~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~ 129 (751)
..+..|+|++... ++.+-...+.|..+++........+ .........+++.+.. +.++++-...+.|.+.++....
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~-g~ly~~d~~~~~I~~~~~dG~~- 149 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVH-DKLYWTDSGTSRIEVANLDGAH- 149 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCS-
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE-eCCCCCccEEEEecCC-CeEEEEcCCCCeEEEEcCCCCc-
Confidence 3478999997544 5555567788999998765433333 2233456788998863 5666777778899999987421
Q ss_pred CCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC-CcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecc
Q 004468 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (751)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D-g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (751)
....+...-.....|++.|.++.++++-... +.|..+++...... .+.
T Consensus 150 ---------~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~------------~~~---------- 198 (349)
T 3v64_C 150 ---------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR------------IIA---------- 198 (349)
T ss_dssp ---------CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE------------ESC----------
T ss_pred ---------eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE------------EEE----------
Confidence 1222223345678999999777888887776 88888887653211 000
Q ss_pred cCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEc
Q 004468 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (751)
Q Consensus 209 ~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fs 288 (751)
.......+.++|+|.++.++++-...+.|..+|+..... ..+.... ......+++
T Consensus 199 ---~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~--------------~~~~~~~-------~~~P~giav- 253 (349)
T 3v64_C 199 ---DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR--------------KAVISQG-------LPHPFAITV- 253 (349)
T ss_dssp ---CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------------EEEECSS-------CSSEEEEEE-
T ss_pred ---ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce--------------EEEEeCC-------CCCceEEEE-
Confidence 011235688999987666666666778899999763211 0110000 113567788
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCcceee
Q 004468 289 PNGEEVLLSYSGEHVYLMDVNHAGGRAMR 317 (751)
Q Consensus 289 pdg~~Ll~~s~d~~I~lwdl~~~~~~~~~ 317 (751)
..+..+++-...+.|..++..+++.....
T Consensus 254 ~~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 254 FEDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred ECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 45555666667889999996665544333
No 236
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.92 E-value=0.0023 Score=66.23 Aligned_cols=248 Identities=10% Similarity=0.023 Sum_probs=138.0
Q ss_pred ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004468 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (751)
Q Consensus 38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg 117 (751)
...+.+..+... .....++|+++|+++++-...+.|..||.... ....+ .-...+..+++.|+ ++++++.....
T Consensus 20 ~~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~--~~~~~p~gia~~~d--G~l~vad~~~~ 93 (306)
T 2p4o_A 20 APAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA--TVEGKVSGLAFTSN--GDLVATGWNAD 93 (306)
T ss_dssp CCEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE--ECSSEEEEEEECTT--SCEEEEEECTT
T ss_pred CCceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE--eCCCCceeEEEcCC--CcEEEEeccCC
Confidence 344555566443 56789999999998888878899999998754 33333 12356889999998 77766654433
Q ss_pred --cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccce
Q 004468 118 --EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (751)
Q Consensus 118 --~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~ 195 (751)
.|..+|...+.- ..+..+. .......++..+ ++..+++-..++.|..+|...+.. .
T Consensus 94 ~~~v~~~d~~~g~~--------~~~~~~~-~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~------------~ 151 (306)
T 2p4o_A 94 SIPVVSLVKSDGTV--------ETLLTLP-DAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSG------------S 151 (306)
T ss_dssp SCEEEEEECTTSCE--------EEEEECT-TCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEE------------E
T ss_pred cceEEEEcCCCCeE--------EEEEeCC-CccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcE------------e
Confidence 355566554210 1111111 122234555544 455666655688888888765320 0
Q ss_pred EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC-CCCccccCCCCCCCCcccccccccccc
Q 004468 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (751)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (751)
+.... +... ...........+.+ +|++..++++-...+.|..||+.. ++. .. ...+.. .
T Consensus 152 v~~~~--~~~~-~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~-~~----------~~~~~~--~-- 211 (306)
T 2p4o_A 152 IWLEH--PMLA-RSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP-GE----------PEIFVE--Q-- 211 (306)
T ss_dssp EEEEC--GGGS-CSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB-CC----------CEEEEE--S--
T ss_pred EEEEC--Cccc-cccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC-Cc----------cEEEec--c--
Confidence 00000 0000 00000111233444 775445666666778999999864 211 00 011100 0
Q ss_pred CCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccee-eeec-CCCceeEEeC---CCCCCcccC
Q 004468 275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM-RYTV-GDASKIMSFT---PTLNGLELQ 339 (751)
Q Consensus 275 ~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~-~~~~-~~~~~~~~~s---p~~~~~~~~ 339 (751)
.....++++++|+.+++....+.|.+||... ..... .... ...+..++|. |+.+.+...
T Consensus 212 -----~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G-~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt 275 (306)
T 2p4o_A 212 -----TNIDDFAFDVEGNLYGATHIYNSVVRIAPDR-STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVV 275 (306)
T ss_dssp -----CCCSSEEEBTTCCEEEECBTTCCEEEECTTC-CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred -----CCCCCeEECCCCCEEEEeCCCCeEEEECCCC-CEEEEeecccccCCceEEEEecccCCCCEEEEE
Confidence 1245689999998877777789999999763 32111 1122 2456677887 665555443
No 237
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.88 E-value=2.3e-06 Score=91.95 Aligned_cols=166 Identities=10% Similarity=0.024 Sum_probs=83.9
Q ss_pred cccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC-CCcEEEEEECCC
Q 004468 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET-SDELVVSGAGDA 117 (751)
Q Consensus 39 ~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s-~~~~l~sgs~Dg 117 (751)
+.++..+++. +.+.+..+..++.++++++.|+.|+.||..+|+.+..+ ..+..... ..+|.- .+..|++|+.|+
T Consensus 28 tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~-~~~~~~~~--~~sp~~~~~~~v~~g~~dg 102 (369)
T 2hz6_A 28 TGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKL-PFTIPELV--QASPCRSSDGILYMGKKQD 102 (369)
T ss_dssp TCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEEC-SCCHHHHH--TTCSCC-----CCCCEEEE
T ss_pred CCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeee-eccCcccc--ccCceEecCCEEEEEeCCC
Confidence 4445555554 45556666678888888899999999999988877665 22211110 111210 145788888999
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004468 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (751)
Q Consensus 118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l 197 (751)
.|+.||..++. .+..+..+. ...++| .+..+++++.|+.|+.||.++++..
T Consensus 103 ~v~a~D~~tG~----------~~w~~~~~~----~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~~~-------------- 153 (369)
T 2hz6_A 103 IWYVIDLLTGE----------KQQTLSSAF----ADSLSP-STSLLYLGRTEYTITMYDTKTRELR-------------- 153 (369)
T ss_dssp EEEEECCC-------------------------------------EEEEEEEEEEECCCSSSSSCC--------------
T ss_pred EEEEEECCCCc----------EEEEecCCC----cccccc-cCCEEEEEecCCEEEEEECCCCCEE--------------
Confidence 99999998752 233443332 234566 5567778899999999999988643
Q ss_pred EecccCceecccCCCCCccceEEEEEeCC--CCcEEEEEeCCCeEEEEeCCCCCCc
Q 004468 198 LDLRCGAKRSLADPPKQTLSLKSCDISST--RPHLLLVGGSDAFARLYDRRMLPPL 251 (751)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~--~~~~l~sgs~D~~IriwD~~~~~~~ 251 (751)
|....+ ......+.++ -...+++++.|+.|+.||.++++.+
T Consensus 154 W~~~~~-------------~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 154 WNATYF-------------DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL 196 (369)
T ss_dssp CEEEEE-------------EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred EeEecc-------------cccCccccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence 111000 0011112221 0145777899999999999987643
No 238
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.87 E-value=0.0017 Score=65.60 Aligned_cols=190 Identities=7% Similarity=0.039 Sum_probs=114.9
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEE----EEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCC
Q 004468 63 SLLISGSDDTHINVWSYSSRKLL----HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAIT 138 (751)
Q Consensus 63 ~~LaSgs~Dg~I~IWd~~~~~~~----~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~ 138 (751)
.+|..+.. +.|+.+++...... ..+.......+..++|.|.. +.++++-...+.|.++++....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~-~~ly~~d~~~~~I~~~~~~g~~---------- 69 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVD-KVVYWTDISEPSIGRASLHGGE---------- 69 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTT-TEEEEEETTTTEEEEEESSSCC----------
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCC-CEEEEEECCCCEEEEEecCCCC----------
Confidence 44555443 47888887654321 11111123467899999973 4566666678899999987421
Q ss_pred CceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccce
Q 004468 139 PSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL 218 (751)
Q Consensus 139 ~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v 218 (751)
....+...-.....+++.++++.++++-...+.|.++++..... ..+... .....
T Consensus 70 ~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~------------~~~~~~-------------~~~~P 124 (267)
T 1npe_A 70 PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR------------RVLFDT-------------GLVNP 124 (267)
T ss_dssp CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEECS-------------SCSSE
T ss_pred cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE------------EEEEEC-------------CCCCc
Confidence 12222222346789999986677888888888999999864321 111110 11345
Q ss_pred EEEEEeCCCCcEEEEEeC--CCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEE
Q 004468 219 KSCDISSTRPHLLLVGGS--DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL 296 (751)
Q Consensus 219 ~~i~~sp~~~~~l~sgs~--D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~ 296 (751)
..++++|+++.++++... .+.|..+++.... .. .+... + ......++++|++.+|++
T Consensus 125 ~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~-------------~~~~~-----~--~~~P~gia~d~~~~~lyv 183 (267)
T 1npe_A 125 RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RR-------------ILAQD-----N--LGLPNGLTFDAFSSQLCW 183 (267)
T ss_dssp EEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CE-------------EEECT-----T--CSCEEEEEEETTTTEEEE
T ss_pred cEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cE-------------EEEEC-----C--CCCCcEEEEcCCCCEEEE
Confidence 789999965555555433 4688888875321 10 00000 0 013788999998877665
Q ss_pred Ee-CCCcEEEEECCC
Q 004468 297 SY-SGEHVYLMDVNH 310 (751)
Q Consensus 297 ~s-~d~~I~lwdl~~ 310 (751)
+. ..+.|+++|+..
T Consensus 184 ~d~~~~~I~~~~~~g 198 (267)
T 1npe_A 184 VDAGTHRAECLNPAQ 198 (267)
T ss_dssp EETTTTEEEEEETTE
T ss_pred EECCCCEEEEEecCC
Confidence 55 578999999976
No 239
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.84 E-value=0.0052 Score=65.98 Aligned_cols=209 Identities=8% Similarity=0.024 Sum_probs=131.3
Q ss_pred CcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004468 51 GCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (751)
Q Consensus 51 ~~V~~l~~s~dg-~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~ 129 (751)
..+..|+|++.+ .++.+-...+.|..+++........+ .........+++.+.. +.++++-...+.|.+.++...
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~-g~lY~~d~~~~~I~~~~~dg~-- 191 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVH-DKLYWTDSGTSRIEVANLDGA-- 191 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE-CSSCSCCCCEEEETTT-TEEEEEETTTTEEEECBTTSC--
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE-eCCCCCccEEEEEeCC-CeEEEEcCCCCeEEEEeCCCC--
Confidence 457789999754 45556567788999998765543333 3333456778888764 566667677788888887642
Q ss_pred CCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC-CcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecc
Q 004468 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (751)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D-g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (751)
.....+...-.....|++.|.++.++++-... +.|..+++..... ..+..
T Consensus 192 --------~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~------------~~~~~--------- 242 (386)
T 3v65_B 192 --------HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR------------RIIAD--------- 242 (386)
T ss_dssp --------SCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------------EEEEC---------
T ss_pred --------ceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc------------EEEEE---------
Confidence 11222233345678999999777888887666 7888888765321 11111
Q ss_pred cCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEc
Q 004468 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (751)
Q Consensus 209 ~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fs 288 (751)
......+.|+|+|.+++++++-...+.|..+|+...... .+.... ......+++
T Consensus 243 ----~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~--------------~~~~~~-------~~~P~giav- 296 (386)
T 3v65_B 243 ----THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK--------------AVISQG-------LPHPFAITV- 296 (386)
T ss_dssp ----SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCE--------------EEECSS-------CSSEEEEEE-
T ss_pred ----CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeE--------------EEEECC-------CCCceEEEE-
Confidence 012346789999866666666667788999987632110 110000 113567888
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCcceeee
Q 004468 289 PNGEEVLLSYSGEHVYLMDVNHAGGRAMRY 318 (751)
Q Consensus 289 pdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~ 318 (751)
..+..+++....+.|..+|..++.......
T Consensus 297 ~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 297 FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 445556666778899999966655444433
No 240
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.83 E-value=0.00041 Score=73.90 Aligned_cols=242 Identities=9% Similarity=-0.080 Sum_probs=131.3
Q ss_pred EEEEEeCCC----cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE----------CCCcEEEEECCCCCC
Q 004468 64 LLISGSDDT----HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVRLFNLSRFSG 129 (751)
Q Consensus 64 ~LaSgs~Dg----~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs----------~Dg~V~vwd~~~~~~ 129 (751)
.+++-..++ +|.++|..+++.+.++..+.. + .+.|+|+ +++++.+. .+++|.+||+.+.
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~-P--~i~~spD--g~~lyVan~~~~r~~~G~~~~~VsviD~~T~-- 106 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL-S--LAVAGHS--GSDFALASTSFARSAKGKRTDYVEVFDPVTF-- 106 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT-C--EEEECTT--SSCEEEEEEEETTTTSSSEEEEEEEECTTTC--
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCCCC-C--ceEECCC--CCEEEEEcccccccccCCCCCEEEEEECCCC--
Confidence 444555455 888999999999999966654 4 7999999 67776665 4789999999975
Q ss_pred CCCCCCCCCCceeeccc-------CCceeEEEEecCCCCEEEEEeC--CCcEEE--EecCCCCCCCC-----C-------
Q 004468 130 RGLDDNAITPSALYQCH-------TRRVKKLAVEVGNPHVVWSASE--DGTLRQ--HDFRQGSSCPP-----A------- 186 (751)
Q Consensus 130 ~~~~~~~~~~~~~~~~h-------~~~V~~l~~sp~~~~~l~s~s~--Dg~I~i--wDlr~~~~~~~-----~------- 186 (751)
+.+..+.-+ ......++++|++ ++++.+.. +..|.+ +|+.+-..+.. .
T Consensus 107 --------~vv~~I~v~~~~~~~~g~~P~~ia~SpDG-k~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~ 177 (368)
T 1mda_H 107 --------LPIADIELPDAPRFSVGPRVHIIGNCASS-ACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAAT 177 (368)
T ss_dssp --------CEEEEEEETTSCSCCBSCCTTSEEECTTS-SCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTE
T ss_pred --------CEEEEEECCCccccccCCCcceEEEcCCC-CEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeE
Confidence 445555432 1345689999955 44445443 467888 99865111000 0
Q ss_pred -CCCCCccceEEEeccc-----Cceecc--cCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC--ccccCC
Q 004468 187 -GSSHQECRNILLDLRC-----GAKRSL--ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP--LTSCQK 256 (751)
Q Consensus 187 -~~~~~~~~~~l~~~~~-----~~~~~~--~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~--~~~~~~ 256 (751)
.....+.....+++.. +..... ...+-...+. . .++++.++++ +. +.|.+.|...... +..+..
T Consensus 178 ~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~v-s~-~~V~viD~~~~~~~v~~~~~~ 251 (368)
T 1mda_H 178 HYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWA-VA-SSILQGDIPAAGATMKAAIDG 251 (368)
T ss_dssp EECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEEC-BS-SCCEEEECCSSCCEEECCCCS
T ss_pred EEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEE-cC-CEEEEEECCCCcceEEEEEEe
Confidence 0000111122233332 111000 0000011122 2 5544444444 44 8899999864321 100000
Q ss_pred CCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCCcceeeeecCCCceeE
Q 004468 257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---------GEHVYLMDVNHAGGRAMRYTVGDASKIM 327 (751)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~---------d~~I~lwdl~~~~~~~~~~~~~~~~~~~ 327 (751)
. .......+........++|+|||++|+++.. ++.+.++|+.+.+... .+..+..+..+
T Consensus 252 ~-----------~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~-~i~vg~~p~gi 319 (368)
T 1mda_H 252 N-----------ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG-PISNGHDSDAI 319 (368)
T ss_dssp S-----------CTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE-CCEEEEEECEE
T ss_pred c-----------cccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEE-EEECCCCcceE
Confidence 0 0000000000001122689999999887643 2466799999965333 33334467888
Q ss_pred EeCCCCCCcccC
Q 004468 328 SFTPTLNGLELQ 339 (751)
Q Consensus 328 ~~sp~~~~~~~~ 339 (751)
+|+|+.+.+.+.
T Consensus 320 ~~s~Dg~~l~va 331 (368)
T 1mda_H 320 IAAQDGASDNYA 331 (368)
T ss_dssp EECCSSSCEEEE
T ss_pred EECCCCCEEEEE
Confidence 999987755444
No 241
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.81 E-value=0.00033 Score=81.32 Aligned_cols=72 Identities=4% Similarity=0.099 Sum_probs=53.5
Q ss_pred EEEEECCCCCEEEEEeCCC-------------------cEEEEeCCCCeEEEEecccCC--------cceEEEEEecCCC
Q 004468 54 NAISWNSKGSLLISGSDDT-------------------HINVWSYSSRKLLHSIETGHS--------ANVFCTKFVPETS 106 (751)
Q Consensus 54 ~~l~~s~dg~~LaSgs~Dg-------------------~I~IWd~~~~~~~~~l~~~h~--------~~V~~v~fsp~s~ 106 (751)
..+++++++.+|..++.++ .|..+|..+|+.+..+...+. .....+....+
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~d-- 323 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIA-- 323 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEET--
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccC--
Confidence 3578889888888887664 499999999999888744332 22333344445
Q ss_pred C---cEEEEEECCCcEEEEECCCC
Q 004468 107 D---ELVVSGAGDAEVRLFNLSRF 127 (751)
Q Consensus 107 ~---~~l~sgs~Dg~V~vwd~~~~ 127 (751)
| ..|+.++.+|.|+++|..++
T Consensus 324 G~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 324 GKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp TEEEEEEEECCTTSEEEEEETTTC
T ss_pred CcEeeEEEEECCCCEEEEEECCCC
Confidence 6 68899999999999999875
No 242
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.76 E-value=0.00013 Score=67.68 Aligned_cols=125 Identities=14% Similarity=0.039 Sum_probs=97.8
Q ss_pred cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccC-----CCC-------CchhhhhHhHHHHHhhcccccchhhhHH
Q 004468 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLS-----GIG-------PMLRHECLCIRAALLLKRKWKNDAQMAI 427 (751)
Q Consensus 360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~-----~~~-------~~~~~~~~~~ra~~~~~r~w~~d~y~al 427 (751)
......+...++..+..|. |..|+..|..+|...+. .+. .+....+|.++|.++++.+ +...|+
T Consensus 8 ~~~a~~~~~~G~~~~~~~~-~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~---~~~~A~ 83 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKD-YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG---DLHEAE 83 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHT---CHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC---cHHHHH
Confidence 3456778888899998888 99999999999886221 000 1222458889999998765 456799
Q ss_pred HhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh-hhhHHHHHHHHHH
Q 004468 428 RDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS-VMAEKVENIKKHI 488 (751)
Q Consensus 428 ~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~-~~~~~~~~~~~~~ 488 (751)
.+|..++.++|.+.+++++++.++..+|++.+|..++.......|... .....+..+...+
T Consensus 84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 84 ETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999766 4444444444444
No 243
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.74 E-value=0.00054 Score=79.49 Aligned_cols=100 Identities=12% Similarity=0.053 Sum_probs=65.2
Q ss_pred CCcEEEEeCCCCeEEEEecccCCc-------------------------------ceEEEEEecCCCCcEEEEEECCC--
Q 004468 71 DTHINVWSYSSRKLLHSIETGHSA-------------------------------NVFCTKFVPETSDELVVSGAGDA-- 117 (751)
Q Consensus 71 Dg~I~IWd~~~~~~~~~l~~~h~~-------------------------------~V~~v~fsp~s~~~~l~sgs~Dg-- 117 (751)
++.|..||..+|+.+..+...... ....+++.|+ +.+|+.+..++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~--~~~vy~~~~~~~~ 266 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE--LNTMYVGTGNGSP 266 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT--TTEEEEECCCEES
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC--CCEEEEECCCCcc
Confidence 799999999999998877332111 1135678888 56777776654
Q ss_pred -----------------cEEEEECCCCCCCCCCCCCCCCceeecc--cC-------CceeEEEEecCCC---CEEEEEeC
Q 004468 118 -----------------EVRLFNLSRFSGRGLDDNAITPSALYQC--HT-------RRVKKLAVEVGNP---HVVWSASE 168 (751)
Q Consensus 118 -----------------~V~vwd~~~~~~~~~~~~~~~~~~~~~~--h~-------~~V~~l~~sp~~~---~~l~s~s~ 168 (751)
+|..+|..++. .+-.++. |. ....-+.... ++ ..++.++.
T Consensus 267 w~~~~~~~~~gd~~~~~sv~AlD~~TG~----------~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~ 335 (677)
T 1kb0_A 267 WSHKVRSPKGGDNLYLASIVALDPDTGK----------YKWHYQETPGDNWDYTSTQPMILADIKI-AGKPRKVILHAPK 335 (677)
T ss_dssp SCHHHHSTTCCCCTTTTEEEEECTTTCC----------EEEEEESSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCT
T ss_pred ccCCCCCccCCCCeeeEEEEEEECCCCC----------EEEEEecCCCcccccccCCCcEEEeccc-CCcEeeEEEEECC
Confidence 48888888652 2333221 21 1122223333 44 67889999
Q ss_pred CCcEEEEecCCCCCC
Q 004468 169 DGTLRQHDFRQGSSC 183 (751)
Q Consensus 169 Dg~I~iwDlr~~~~~ 183 (751)
+|.|+++|.++++.+
T Consensus 336 ~G~l~~lD~~tG~~l 350 (677)
T 1kb0_A 336 NGFFFVLDRTNGKFI 350 (677)
T ss_dssp TSEEEEEETTTCCEE
T ss_pred CCEEEEEECCCCCEe
Confidence 999999999998753
No 244
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.74 E-value=3.3e-05 Score=71.24 Aligned_cols=123 Identities=13% Similarity=0.004 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCC-Cc-----hhhhhHhHHHHHhhcccccchhhhHHHhhHHHhc
Q 004468 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIG-PM-----LRHECLCIRAALLLKRKWKNDAQMAIRDCYNARR 435 (751)
Q Consensus 362 ~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~-~~-----~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~ 435 (751)
+...+...++..+..|. |..|+..|..+|...+..+. .. ....+|.||+.++.+.+- .-.|+.++.+|+.
T Consensus 10 ~a~~~~~~G~~l~~~g~-~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr---~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGE-YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS---FDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC---HHHHHHHHHHHHH
Confidence 45567778888888888 99999999999998776321 01 122389999999998764 4568999999999
Q ss_pred C-------CCCCcchH----HHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHHHHH
Q 004468 436 I-------DSSSFRAH----LYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI 488 (751)
Q Consensus 436 ~-------~~~~~~a~----~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 488 (751)
+ +|.+.++| +++..+|..++++.+|+.+++......|+.......+...++.+
T Consensus 86 l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 86 YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 9 99999999 99999999999999999999998888887665444444444444
No 245
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.73 E-value=0.013 Score=60.88 Aligned_cols=211 Identities=7% Similarity=-0.021 Sum_probs=127.5
Q ss_pred CCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCC---CeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECC
Q 004468 50 QGCVNAISWNSKG-SLLISGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (751)
Q Consensus 50 ~~~V~~l~~s~dg-~~LaSgs~Dg~I~IWd~~~---~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~ 125 (751)
-..+..++|++.+ .++.+-...+.|..+++.. +.....+....-.....+++.+.. +.++++-...+.|.+.++.
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~-~~ly~~d~~~~~I~~~~~~ 107 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVADTK 107 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC-CeEEEEECCCCEEEEEeCC
Confidence 3467899999865 4555666678999999875 122222212223456789998763 5666676778899999987
Q ss_pred CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC-CcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004468 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (751)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D-g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (751)
.. .....+...-.....+++.|.++.++++.... +.|..+++.... ..++..
T Consensus 108 g~----------~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~------------~~~~~~----- 160 (316)
T 1ijq_A 108 GV----------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD------------IYSLVT----- 160 (316)
T ss_dssp SS----------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC------------EEEEEC-----
T ss_pred CC----------ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC------------eEEEEE-----
Confidence 42 11112222335678999999777788776554 788888775422 111111
Q ss_pred eecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEE
Q 004468 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (751)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~ 284 (751)
......+.++++|++++++++-...+.|..+|+.... ... +... .........
T Consensus 161 --------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~-------------~~~~-----~~~~~~P~g 213 (316)
T 1ijq_A 161 --------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKT-------------ILED-----EKRLAHPFS 213 (316)
T ss_dssp --------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEE-------------EEEC-----TTTTSSEEE
T ss_pred --------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEE-------------Eeec-----CCccCCcEE
Confidence 0123577899999766666666677899999986321 111 1000 000113567
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCCccee
Q 004468 285 VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM 316 (751)
Q Consensus 285 v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~ 316 (751)
+++. .+..+++....+.|..+|..+++....
T Consensus 214 iav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~ 244 (316)
T 1ijq_A 214 LAVF-EDKVFWTDIINEAIFSANRLTGSDVNL 244 (316)
T ss_dssp EEEE-TTEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred EEEE-CCEEEEEECCCCeEEEEeCCCCcceEE
Confidence 7775 455556666788999999877654333
No 246
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.71 E-value=0.016 Score=61.17 Aligned_cols=200 Identities=9% Similarity=0.033 Sum_probs=124.9
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCC
Q 004468 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (751)
Q Consensus 51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~ 130 (751)
+...|.+..+++.+|++ ....|+..++........+ . ....+..++|.+.. +.++++-...+.|..+++....
T Consensus 34 d~~~C~~~~~~~~ll~~--~~~~I~~i~~~g~~~~~~~-~-~~~~~~~l~~d~~~-~~ly~~D~~~~~I~r~~~~g~~-- 106 (349)
T 3v64_C 34 DRRSCKALGPEPVLLFA--NRIDIRQVLPHRSEYTLLL-N-NLENAIALDFHHRR-ELVFWSDVTLDRILRANLNGSN-- 106 (349)
T ss_dssp TSSCEEESSSCCEEEEE--CBSCEEEECTTSCCEEEEE-C-SCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCS--
T ss_pred CCCcccccccCceeEee--cccceEEEeCCCCeeEEee-c-CCCceEEEEEeccc-cEEEEEeccCCceEEEecCCCC--
Confidence 34456666664444433 3345888888755443333 3 33458899999874 5566666677889999987531
Q ss_pred CCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccC
Q 004468 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 210 (751)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 210 (751)
..............+++.+.++.++++-...+.|.+.++..... .++..
T Consensus 107 --------~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~------------~~l~~----------- 155 (349)
T 3v64_C 107 --------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR------------KVLLW----------- 155 (349)
T ss_dssp --------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEEC-----------
T ss_pred --------ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce------------EEEEe-----------
Confidence 12222222345678999886778888888889999999865421 11111
Q ss_pred CCCCccceEEEEEeCCCCcEEEEEeCC-CeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcC
Q 004468 211 PPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP 289 (751)
Q Consensus 211 ~~~~~~~v~~i~~sp~~~~~l~sgs~D-~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fsp 289 (751)
........+++.|.++.++++-... +.|..+++...... . +.. . .....+.++|+|
T Consensus 156 --~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~-------------~~~-----~--~~~~PnGla~d~ 212 (349)
T 3v64_C 156 --QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-I-------------IAD-----T--HLFWPNGLTIDY 212 (349)
T ss_dssp --TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-E-------------SCC-----S--SCSCEEEEEEET
T ss_pred --CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE-E-------------EEE-----C--CCCCcceEEEeC
Confidence 0123467899999766666666565 78888887632110 0 000 0 011378999999
Q ss_pred CCCEEEEEe-CCCcEEEEECCCC
Q 004468 290 NGEEVLLSY-SGEHVYLMDVNHA 311 (751)
Q Consensus 290 dg~~Ll~~s-~d~~I~lwdl~~~ 311 (751)
++..|+.+- ..+.|+.+|++..
T Consensus 213 ~~~~lY~aD~~~~~I~~~~~dG~ 235 (349)
T 3v64_C 213 AGRRMYWVDAKHHVIERANLDGS 235 (349)
T ss_dssp TTTEEEEEETTTTEEEEEETTSC
T ss_pred CCCEEEEEECCCCEEEEEeCCCC
Confidence 777666554 5788999998763
No 247
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.69 E-value=0.00051 Score=79.86 Aligned_cols=100 Identities=15% Similarity=0.118 Sum_probs=65.9
Q ss_pred CCcEEEEeCCCCeEEEEecccC------------------------------CcceEEEEEecCCCCcEEEEEECCCc--
Q 004468 71 DTHINVWSYSSRKLLHSIETGH------------------------------SANVFCTKFVPETSDELVVSGAGDAE-- 118 (751)
Q Consensus 71 Dg~I~IWd~~~~~~~~~l~~~h------------------------------~~~V~~v~fsp~s~~~~l~sgs~Dg~-- 118 (751)
++.|..||..+|+.+..+.... ......+++.|+ +.+|+.+..++.
T Consensus 182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~--~~~vy~~~~~g~~w 259 (689)
T 1yiq_A 182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPE--LNLLYIGVGNGSLW 259 (689)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETT--TTEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCC--CCEEEEeCCCCCcc
Confidence 7899999999999988763211 111125788888 578888877763
Q ss_pred -----------------EEEEECCCCCCCCCCCCCCCCceeecc--cC-------CceeEEEEecCCCC---EEEEEeCC
Q 004468 119 -----------------VRLFNLSRFSGRGLDDNAITPSALYQC--HT-------RRVKKLAVEVGNPH---VVWSASED 169 (751)
Q Consensus 119 -----------------V~vwd~~~~~~~~~~~~~~~~~~~~~~--h~-------~~V~~l~~sp~~~~---~l~s~s~D 169 (751)
|..+|..++. .+-.++. |. ..+....... ++. .++.++.+
T Consensus 260 ~~~~~~~~~gd~~y~~~v~AlD~~TG~----------~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~~~~~v~~~~~~ 328 (689)
T 1yiq_A 260 DPKWRSQAKGDNLFLSSIVAVNADTGE----------YVWHYQTTPGDAWDYTATQHMILAELPI-DGKPRKVLMQAPKN 328 (689)
T ss_dssp CHHHHHTTCSCCTTTTEEEEEETTTCC----------EEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTT
T ss_pred ccCCCCCCCCCceeeeeEEEEEccCCc----------eeEeeecCCcccccccCCCCcEEEeecc-CCcEEEEEEEECCC
Confidence 9999998752 2333332 21 1111122222 333 78889999
Q ss_pred CcEEEEecCCCCCC
Q 004468 170 GTLRQHDFRQGSSC 183 (751)
Q Consensus 170 g~I~iwDlr~~~~~ 183 (751)
|.++++|.++++.+
T Consensus 329 G~l~~lD~~tG~~l 342 (689)
T 1yiq_A 329 GFFYVIDRATGELL 342 (689)
T ss_dssp SEEEEEETTTCCEE
T ss_pred CeEEEEECCCCCEe
Confidence 99999999998754
No 248
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.66 E-value=0.0014 Score=76.30 Aligned_cols=171 Identities=11% Similarity=0.099 Sum_probs=92.3
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeccc-CCcceEEEEEec---CCCCcEEEEEE-----CCCcEEEEECCCCCCCCC
Q 004468 62 GSLLISGSDDTHINVWSYSSRKLLHSIETG-HSANVFCTKFVP---ETSDELVVSGA-----GDAEVRLFNLSRFSGRGL 132 (751)
Q Consensus 62 g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~-h~~~V~~v~fsp---~s~~~~l~sgs-----~Dg~V~vwd~~~~~~~~~ 132 (751)
+..|+.++.|+.|..+|..+|+.+..+... +......+..+| + +..++..+ .++.|+.||..++...-.
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~--g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 198 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVN--GKVVIGNGGAEFGVRGYVTAYDAETGKEAWR 198 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEEC--CEEEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence 567888999999999999999998877443 222111222222 3 44444332 378999999987532100
Q ss_pred -CCCCCCCce------------ee--------cccCCceeEEEEecCCCCEEEEEeCCCc-------------------E
Q 004468 133 -DDNAITPSA------------LY--------QCHTRRVKKLAVEVGNPHVVWSASEDGT-------------------L 172 (751)
Q Consensus 133 -~~~~~~~~~------------~~--------~~h~~~V~~l~~sp~~~~~l~s~s~Dg~-------------------I 172 (751)
......+.. .. .++......+++.|. ..+++.++.++. |
T Consensus 199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPE-LNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCC-CCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 000000000 00 011111235788884 467777877764 8
Q ss_pred EEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCc---EEEEEeCCCeEEEEeCCCCC
Q 004468 173 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH---LLLVGGSDAFARLYDRRMLP 249 (751)
Q Consensus 173 ~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~---~l~sgs~D~~IriwD~~~~~ 249 (751)
..+|.++++. +|....... ..+... ....+....+.. ++. .++.++.+|.++++|.++++
T Consensus 278 ~AlD~~TG~~--------------~W~~~~~~~-d~wd~~-~~~~~~l~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 278 VAVNADTGEY--------------VWHYQTTPG-DAWDYT-ATQHMILAELPI-DGKPRKVLMQAPKNGFFYVIDRATGE 340 (689)
T ss_dssp EEEETTTCCE--------------EEEEESSTT-CCSCCC-CCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred EEEEccCCce--------------eEeeecCCc-cccccc-CCCCcEEEeecc-CCcEEEEEEEECCCCeEEEEECCCCC
Confidence 8888887752 232221100 000000 011111112222 233 78899999999999999998
Q ss_pred Ccc
Q 004468 250 PLT 252 (751)
Q Consensus 250 ~~~ 252 (751)
.+.
T Consensus 341 ~l~ 343 (689)
T 1yiq_A 341 LLS 343 (689)
T ss_dssp EEE
T ss_pred Eec
Confidence 763
No 249
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.55 E-value=0.013 Score=62.68 Aligned_cols=197 Identities=8% Similarity=0.036 Sum_probs=121.0
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCC
Q 004468 54 NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD 133 (751)
Q Consensus 54 ~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~ 133 (751)
+|.+..+.+ +|+.+ ....|+..++........+ . ....+..++|.+.. +.++++-...+.|..+++....
T Consensus 80 ~C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~-~-~~~~~~gl~~d~~~-~~ly~~D~~~~~I~r~~~~g~~----- 149 (386)
T 3v65_B 80 SCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLL-N-NLENAIALDFHHRR-ELVFWSDVTLDRILRANLNGSN----- 149 (386)
T ss_dssp CEEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEE-C-SCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCC-----
T ss_pred eECCccccc-eeEee-cCccceeeccCCCcEEEEe-c-CCCccEEEEEecCC-CeEEEEeCCCCcEEEEecCCCC-----
Confidence 354555533 33333 3356888888765443333 2 33558899999874 5566666677889999987531
Q ss_pred CCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCC
Q 004468 134 DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK 213 (751)
Q Consensus 134 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 213 (751)
....+.........+++.+.++.++++-...+.|.+.++..... ..+.. .
T Consensus 150 -----~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~------------~~l~~-------------~ 199 (386)
T 3v65_B 150 -----VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR------------KVLLW-------------Q 199 (386)
T ss_dssp -----EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC------------EEEEC-------------S
T ss_pred -----cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce------------EEeec-------------C
Confidence 11222222345577899886778888888888999888764321 11211 0
Q ss_pred CccceEEEEEeCCCCcEEEEEeCC-CeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCC
Q 004468 214 QTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE 292 (751)
Q Consensus 214 ~~~~v~~i~~sp~~~~~l~sgs~D-~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~ 292 (751)
.......+++.|.++.++++-... +.|..+++...... .+... + ....+.|+|+|++.
T Consensus 200 ~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~--------------~~~~~-----~--~~~PnGlavd~~~~ 258 (386)
T 3v65_B 200 SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR--------------IIADT-----H--LFWPNGLTIDYAGR 258 (386)
T ss_dssp SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--------------EEECS-----S--CSCEEEEEEEGGGT
T ss_pred CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE--------------EEEEC-----C--CCCeeeEEEeCCCC
Confidence 123467899999766666665555 78888887532111 00000 0 11368999998777
Q ss_pred EEEEE-eCCCcEEEEECCCC
Q 004468 293 EVLLS-YSGEHVYLMDVNHA 311 (751)
Q Consensus 293 ~Ll~~-s~d~~I~lwdl~~~ 311 (751)
.|+.+ +..+.|+.+|+...
T Consensus 259 ~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 259 RMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp EEEEEETTTTEEEEECTTSC
T ss_pred EEEEEECCCCEEEEEeCCCC
Confidence 66655 45788999998763
No 250
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.52 E-value=0.00021 Score=79.67 Aligned_cols=224 Identities=12% Similarity=0.113 Sum_probs=124.5
Q ss_pred CCCEEEEEeC-CCcEEEEeCCCCeEEEEecccCCcceEEEEE-e-cCCCCcEEEEEE------------------CCCcE
Q 004468 61 KGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKF-V-PETSDELVVSGA------------------GDAEV 119 (751)
Q Consensus 61 dg~~LaSgs~-Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~f-s-p~s~~~~l~sgs------------------~Dg~V 119 (751)
||++|..... +..|.+.|+.+.++...+.......+..+++ . |+ +.+++.++ .++.|
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~--~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPR--SNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSB--CSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCC--CcEEEEecccccccCCCCcccccccccCceE
Confidence 7887766654 5569999999999887543234456888888 4 88 67777764 34578
Q ss_pred EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC---------------CcEEEEecCCCCCCC
Q 004468 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED---------------GTLRQHDFRQGSSCP 184 (751)
Q Consensus 120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D---------------g~I~iwDlr~~~~~~ 184 (751)
.+.|..+. +.+..+.-- +....++++|+ +.++++++.+ ..|.++|........
T Consensus 178 tvID~~t~----------~v~~qI~Vg-g~pd~~~~spd-Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v 245 (595)
T 1fwx_A 178 TAVDADKW----------EVAWQVLVS-GNLDNCDADYE-GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI 245 (595)
T ss_dssp EEEETTTT----------EEEEEEEES-SCCCCEEECSS-SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred EEEECCCC----------eEEEEEEeC-CCccceEECCC-CCEEEEEecCcccCcchhhccccccceEEEeeccceeEec
Confidence 88888853 223333311 13456889995 5555565544 236666654322110
Q ss_pred CCCCCCCccceEEEeccc--CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCC
Q 004468 185 PAGSSHQECRNILLDLRC--GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (751)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~ 262 (751)
..+....-....+++... +... +...+ -.....++.++|++...++++..+.+|.+||+.+.+... .....+..
T Consensus 246 ~~Gk~~~i~~V~VID~~~~~~~~~-~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~--~~~l~~~~ 321 (595)
T 1fwx_A 246 AAGDYQELNGVKVVDGRKEASSLF-TRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF--YENADPRS 321 (595)
T ss_dssp HHTCSEEETTEEEEECSGGGCCSS-EEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH--HSCCCGGG
T ss_pred cCCCeeEECcEEEEeCcccCCcee-EEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc--ccccCccc
Confidence 000000001134455544 2110 00000 112456789999644455556678999999998642110 00000000
Q ss_pred ccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
++... . ..+.....++|+|+|...++...|++|.+||+..
T Consensus 322 ~v~~~----v----~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 322 AVVAE----P----ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp GEEEC----C----BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred ceEEE----c----CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 00000 0 1122478899999994334455699999999887
No 251
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.51 E-value=0.056 Score=58.11 Aligned_cols=213 Identities=7% Similarity=-0.012 Sum_probs=128.1
Q ss_pred CCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCe---EEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEEC
Q 004468 49 HQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (751)
Q Consensus 49 H~~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~---~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~ 124 (751)
.-..+..|+|++.+. ++.+-...+.|..+++.... ....+..........+++.+.. +.++++-...+.|.+.++
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~-~~lY~~d~~~~~I~~~~~ 188 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVADT 188 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTT-TEEEEEETTTTEEEEECT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecC-CceEEEECCCCeEEEEeC
Confidence 345788999998554 55555567888888886421 1222213344567889998853 566667677889999988
Q ss_pred CCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeC-CCcEEEEecCCCCCCCCCCCCCCccceEEEecccC
Q 004468 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (751)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~-Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (751)
... .....+...-.....|++.|.++.++++-.. .+.|...++..... ..+..
T Consensus 189 ~g~----------~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~------------~~~~~---- 242 (400)
T 3p5b_L 189 KGV----------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------YSLVT---- 242 (400)
T ss_dssp TTC----------SEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC------------EEEEC----
T ss_pred CCC----------ceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc------------EEEEE----
Confidence 742 1122222234457899999977778877644 47888888765321 11111
Q ss_pred ceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceE
Q 004468 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (751)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt 283 (751)
......+.|+++|.+++++++=...+.|..+|+..... .. +... .+. .....
T Consensus 243 ---------~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~-------------~~~~----~~~-l~~P~ 294 (400)
T 3p5b_L 243 ---------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KT-------------ILED----EKR-LAHPF 294 (400)
T ss_dssp ---------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EE-------------EEEC----SST-TSSEE
T ss_pred ---------CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EE-------------EEeC----CCC-CCCCE
Confidence 01245788999987666666656678999999864221 11 1000 000 01245
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCCcceee
Q 004468 284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR 317 (751)
Q Consensus 284 ~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~ 317 (751)
.+++. .+..+++....+.|..+|..++......
T Consensus 295 gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 295 SLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp EEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred EEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence 67773 3445556667889999997776544443
No 252
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.50 E-value=0.0036 Score=63.11 Aligned_cols=196 Identities=11% Similarity=0.049 Sum_probs=113.4
Q ss_pred CeEEEEecccCCcceEEEEEecCCCCcEEEEEEC--CCcEEEEECCCCCCCCCCCCCCCCceeecc-cCCceeEEEEecC
Q 004468 82 RKLLHSIETGHSANVFCTKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVG 158 (751)
Q Consensus 82 ~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~--Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~ 158 (751)
.+.+.++..+.......+.|+|+ +.++++.+. ++.|++.|+.++ +.+..+.- .....-.+++.
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~d--g~Lyvstg~~~~s~v~~iD~~tg----------~v~~~i~l~~~~fgeGi~~~-- 74 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAEN--DTLFESTGLYGRSSVRQVALQTG----------KVENIHKMDDSYFGEGLTLL-- 74 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECST--TEEEEEECSTTTCEEEEEETTTC----------CEEEEEECCTTCCEEEEEEE--
T ss_pred ceEEEEEECCCCCCcccEEEeCC--CeEEEECCCCCCCEEEEEECCCC----------CEEEEEecCCCcceEEEEEe--
Confidence 34556663222234679999997 566666553 689999999975 22333321 11122245554
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC
Q 004468 159 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA 238 (751)
Q Consensus 159 ~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~ 238 (751)
+++++++.-.++.+.++|..+.+.. .....+ .+ . ...+++++ ..++++..++
T Consensus 75 g~~lyv~t~~~~~v~viD~~t~~v~--------------~~i~~g-------~~-~-----g~glt~Dg-~~l~vs~gs~ 126 (266)
T 2iwa_A 75 NEKLYQVVWLKNIGFIYDRRTLSNI--------------KNFTHQ-------MK-D-----GWGLATDG-KILYGSDGTS 126 (266)
T ss_dssp TTEEEEEETTCSEEEEEETTTTEEE--------------EEEECC-------SS-S-----CCEEEECS-SSEEEECSSS
T ss_pred CCEEEEEEecCCEEEEEECCCCcEE--------------EEEECC-------CC-C-----eEEEEECC-CEEEEECCCC
Confidence 4566767777899999999876522 111100 00 1 12355544 4444555789
Q ss_pred eEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeee
Q 004468 239 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY 318 (751)
Q Consensus 239 ~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~ 318 (751)
.|.++|..+.+.+..+.... .+..-..++.+.|. +|...+....++.|.+.|..+++......
T Consensus 127 ~l~viD~~t~~v~~~I~Vg~----------------~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~ 189 (266)
T 2iwa_A 127 ILYEIDPHTFKLIKKHNVKY----------------NGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWIL 189 (266)
T ss_dssp EEEEECTTTCCEEEEEECEE----------------TTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEE
T ss_pred eEEEEECCCCcEEEEEEECC----------------CCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEE
Confidence 99999998876554432110 01111126778888 77544444468999999999976444333
Q ss_pred ecC-------------CCceeEEeCCCCCCc
Q 004468 319 TVG-------------DASKIMSFTPTLNGL 336 (751)
Q Consensus 319 ~~~-------------~~~~~~~~sp~~~~~ 336 (751)
..+ .....++|+|+.+.+
T Consensus 190 ~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~l 220 (266)
T 2iwa_A 190 LPNLRKKLIDEGFRDIDVLNGIAWDQENKRI 220 (266)
T ss_dssp CHHHHHHHHHTTCTTCCCEEEEEEETTTTEE
T ss_pred CCCcccccccccccccCceEEEEEcCCCCEE
Confidence 211 245677787776544
No 253
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.48 E-value=0.029 Score=58.29 Aligned_cols=207 Identities=9% Similarity=0.046 Sum_probs=127.6
Q ss_pred cEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCC
Q 004468 52 CVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (751)
Q Consensus 52 ~V~~l~~s~d-g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~ 130 (751)
.+.+|+|.+. +.+..+-...+.|..+++..+.....+....-.....+++.+.. +.++++-...+.|.++++....
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~-g~ly~~d~~~~~I~~~~~dG~~-- 112 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG-EKLYWTDSETNRIEVSNLDGSL-- 112 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCS--
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC-CeEEEEECCCCEEEEEECCCCc--
Confidence 5668999985 55666666778899999876532211212223456788888763 5666776677899999987421
Q ss_pred CCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe-CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceeccc
Q 004468 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 209 (751)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 209 (751)
........-.....|++.|.++.++++-. ..+.|...++..... ..+..
T Consensus 113 --------~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~------------~~~~~---------- 162 (318)
T 3sov_A 113 --------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR------------FIIIN---------- 162 (318)
T ss_dssp --------CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC------------EEEEC----------
T ss_pred --------EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe------------EEEEE----------
Confidence 11122234456789999987777777763 357888888764321 11111
Q ss_pred CCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcC
Q 004468 210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP 289 (751)
Q Consensus 210 ~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fsp 289 (751)
......+.++|+|++++++++=+..+.|..+|+.... .. .+... . ......+++..
T Consensus 163 ---~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~-------------~~~~~------~-~~~P~glav~~ 218 (318)
T 3sov_A 163 ---SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQ-------------AVVKG------S-LPHPFALTLFE 218 (318)
T ss_dssp ---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE-------------EEECS------C-CSCEEEEEEET
T ss_pred ---CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eE-------------EEecC------C-CCCceEEEEeC
Confidence 0123467899999766666666677899999986321 11 11100 0 11356777753
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCccee
Q 004468 290 NGEEVLLSYSGEHVYLMDVNHAGGRAM 316 (751)
Q Consensus 290 dg~~Ll~~s~d~~I~lwdl~~~~~~~~ 316 (751)
+..+.+-...+.|..++..+++....
T Consensus 219 -~~lywtd~~~~~V~~~~~~~G~~~~~ 244 (318)
T 3sov_A 219 -DILYWTDWSTHSILACNKYTGEGLRE 244 (318)
T ss_dssp -TEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred -CEEEEEecCCCeEEEEECCCCCceEE
Confidence 34455666688999999977654433
No 254
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.00084 Score=58.93 Aligned_cols=100 Identities=23% Similarity=0.165 Sum_probs=85.4
Q ss_pred hhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCc
Q 004468 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF 441 (751)
Q Consensus 362 ~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~ 441 (751)
....+...+...+..|. |..|+..|.+++...+.. ...+.+++.++...+ +.-.|+.++.+++.++|.+.
T Consensus 3 ~a~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~ 72 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSD-WPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLM---SFPEAIADCNKAIEKDPNFV 72 (126)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCcH
Confidence 34556677778888888 999999999999877654 457888998888764 45678999999999999999
Q ss_pred chHHHHHHHHHHhcchHHHHHHHHHhcccC
Q 004468 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLD 471 (751)
Q Consensus 442 ~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~ 471 (751)
.+++.++.++..++++.+|..++.......
T Consensus 73 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 73 RAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999888877
No 255
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.43 E-value=0.011 Score=59.07 Aligned_cols=171 Identities=9% Similarity=0.004 Sum_probs=102.7
Q ss_pred EEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEE
Q 004468 84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163 (751)
Q Consensus 84 ~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l 163 (751)
.+.++...-..-...+.|.. +.++++.+.++.|+++|+.++ +.+..+ -..........+.+.+++
T Consensus 45 Vv~~~phd~~~ftqGL~~~~---~~Ly~stG~~g~v~~iD~~Tg----------kv~~~~--l~~~~FgeGit~~g~~Ly 109 (268)
T 3nok_A 45 IIREYPHATNAFTQGLVFHQ---GHFFESTGHQGTLRQLSLESA----------QPVWME--RLGNIFAEGLASDGERLY 109 (268)
T ss_dssp EEEEEECCTTCCEEEEEEET---TEEEEEETTTTEEEECCSSCS----------SCSEEE--ECTTCCEEEEEECSSCEE
T ss_pred EEEEEcCCCccccceEEEEC---CEEEEEcCCCCEEEEEECCCC----------cEEeEE--CCCCcceeEEEEeCCEEE
Confidence 44445222233346888873 578888899999999999975 223333 122333333334456777
Q ss_pred EEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEE
Q 004468 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY 243 (751)
Q Consensus 164 ~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~Iriw 243 (751)
+..-.++.+.+||..+.+.. -. +.. +.. -..++ ++ +..|+++..++.|.++
T Consensus 110 ~ltw~~~~v~V~D~~Tl~~~--------------~t--------i~~-~~e---GwGLt--~D-g~~L~vSdGs~~l~~i 160 (268)
T 3nok_A 110 QLTWTEGLLFTWSGMPPQRE--------------RT--------TRY-SGE---GWGLC--YW-NGKLVRSDGGTMLTFH 160 (268)
T ss_dssp EEESSSCEEEEEETTTTEEE--------------EE--------EEC-SSC---CCCEE--EE-TTEEEEECSSSEEEEE
T ss_pred EEEccCCEEEEEECCcCcEE--------------EE--------EeC-CCc---eeEEe--cC-CCEEEEECCCCEEEEE
Confidence 77778999999999887532 10 000 001 12233 43 4566666679999999
Q ss_pred eCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcce
Q 004468 244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA 315 (751)
Q Consensus 244 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~ 315 (751)
|..+.+.+..+.... .+..-..++.+.|. +|+..+....++.|.+.|..+++...
T Consensus 161 Dp~T~~v~~~I~V~~----------------~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~ 215 (268)
T 3nok_A 161 EPDGFALVGAVQVKL----------------RGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVG 215 (268)
T ss_dssp CTTTCCEEEEEECEE----------------TTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEE
T ss_pred cCCCCeEEEEEEeCC----------------CCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEE
Confidence 999887655432110 11111135667777 77544444468899999999976443
No 256
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.43 E-value=0.002 Score=59.56 Aligned_cols=124 Identities=17% Similarity=0.087 Sum_probs=101.3
Q ss_pred CcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCC
Q 004468 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (751)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~ 438 (751)
.......+...+...+..+. |..|+..|..++...+.. ...+.+++.+++..+ +.-.|+..+.+++.++|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p 76 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKE-YSKAIDLYTQALSIAPAN------PIYLSNRAAAYSASG---QHEKAAEDAELATVVDP 76 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCT
T ss_pred hhhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCcC------HHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCC
Confidence 34456667778888888888 999999999999877654 457788888887754 45678999999999999
Q ss_pred CCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh--hhHHHHHHHHHHHHHH
Q 004468 439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV--MAEKVENIKKHIAAAE 492 (751)
Q Consensus 439 ~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~ 492 (751)
.+..+++.++.++..++++.+|..++.......|.... ....+..+...+....
T Consensus 77 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~ 132 (164)
T 3sz7_A 77 KYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEAN 132 (164)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988898766 5566666666665543
No 257
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.42 E-value=0.0075 Score=62.67 Aligned_cols=199 Identities=9% Similarity=0.041 Sum_probs=113.4
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccc------------------CCcceEEEEEecCCCCcEEEE
Q 004468 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG------------------HSANVFCTKFVPETSDELVVS 112 (751)
Q Consensus 51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~------------------h~~~V~~v~fsp~s~~~~l~s 112 (751)
....+++|.++|++|.++..++.|..|+..++......... ....+..+++.++. +.+++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~-g~l~v- 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN-NQLYI- 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT-TEEEE-
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCC-CcEEE-
Confidence 34568899999998888889999999998765433211000 11357899999831 55444
Q ss_pred EECCCcEEEEECCCCCCCCCCCCCCCCceeec----c-cCCceeEEEEecCCCCEEEEEeC-----------------CC
Q 004468 113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ----C-HTRRVKKLAVEVGNPHVVWSASE-----------------DG 170 (751)
Q Consensus 113 gs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~----~-h~~~V~~l~~sp~~~~~l~s~s~-----------------Dg 170 (751)
+...+.|..+|...+. +..+. + .......+++.+.+++++++-.. ++
T Consensus 97 ~d~~~~i~~~d~~~g~-----------~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g 165 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGH-----------ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTG 165 (322)
T ss_dssp EETTTEEEEECTTCEE-----------CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred EECCCCEEEEeCCCCE-----------EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCc
Confidence 4444558888876321 11111 1 11346778887723355555322 24
Q ss_pred cEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEE-EEeCCCeEEEEeCCCCC
Q 004468 171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL-VGGSDAFARLYDRRMLP 249 (751)
Q Consensus 171 ~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~-sgs~D~~IriwD~~~~~ 249 (751)
.|..||..+++. ..+.. .......++|+|+ ++.|. +-...+.|.+|++....
T Consensus 166 ~v~~~d~~~~~~------------~~~~~--------------~~~~p~gia~~~d-g~~lyv~d~~~~~I~~~~~~~~~ 218 (322)
T 2fp8_A 166 RLIKYDPSTKET------------TLLLK--------------ELHVPGGAEVSAD-SSFVLVAEFLSHQIVKYWLEGPK 218 (322)
T ss_dssp EEEEEETTTTEE------------EEEEE--------------EESCCCEEEECTT-SSEEEEEEGGGTEEEEEESSSTT
T ss_pred eEEEEeCCCCEE------------EEecc--------------CCccCcceEECCC-CCEEEEEeCCCCeEEEEECCCCc
Confidence 566666544321 00100 1123457899995 56444 44567899999987421
Q ss_pred CccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC----------CCcEEEEECC
Q 004468 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----------GEHVYLMDVN 309 (751)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~----------d~~I~lwdl~ 309 (751)
. . ....+. .. .. ...++++++|++.++... .+.|..+|..
T Consensus 219 ~-~----------~~~~~~--~~------~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 219 K-G----------TAEVLV--KI------PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF 268 (322)
T ss_dssp T-T----------CEEEEE--EC------SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred C-C----------ccceEE--eC------CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC
Confidence 1 0 011111 00 11 567899999987666554 4567788764
No 258
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.42 E-value=0.011 Score=61.38 Aligned_cols=201 Identities=11% Similarity=0.070 Sum_probs=113.0
Q ss_pred CcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEec---cc-CCcceEEEEEec-CCCCcEEEEEEC---------
Q 004468 51 GCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIE---TG-HSANVFCTKFVP-ETSDELVVSGAG--------- 115 (751)
Q Consensus 51 ~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~---~~-h~~~V~~v~fsp-~s~~~~l~sgs~--------- 115 (751)
+.+..|++.+ +|+++++ ...+.|.++|..++.. ..+. .+ .......+++.| + |.++++-..
T Consensus 80 ~~p~gi~~~~~~g~l~v~-d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~--G~l~v~d~~~~~~~~~~~ 155 (322)
T 2fp8_A 80 GRTYDISYNLQNNQLYIV-DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRT--GIVYFTDVSTLYDDRGVQ 155 (322)
T ss_dssp CCEEEEEEETTTTEEEEE-ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTT--CCEEEEESCSSCCTTCHH
T ss_pred CCCceEEEcCCCCcEEEE-ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCC--CEEEEECCcccccccccc
Confidence 3578999997 6665554 4445588888775532 2221 11 123478899999 7 777776432
Q ss_pred --------CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCC
Q 004468 116 --------DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG 187 (751)
Q Consensus 116 --------Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~ 187 (751)
++.|..||..... +..+...-.....|+|+|++..++++-...+.|..||+......
T Consensus 156 ~~~~~~~~~g~v~~~d~~~~~-----------~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~---- 220 (322)
T 2fp8_A 156 QIMDTSDKTGRLIKYDPSTKE-----------TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG---- 220 (322)
T ss_dssp HHHHHTCCCEEEEEEETTTTE-----------EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT----
T ss_pred eehcccCCCceEEEEeCCCCE-----------EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC----
Confidence 3668888876421 22222222345679999944345666677789999998753210
Q ss_pred CCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeC----------CCeEEEEeCCCCCCccccCCC
Q 004468 188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS----------DAFARLYDRRMLPPLTSCQKR 257 (751)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~----------D~~IriwD~~~~~~~~~~~~~ 257 (751)
....+.+ .+ . ...+++.++ +++.++... .+.|..+|.. ++.+..+..
T Consensus 221 -----~~~~~~~-----------~~---g-P~gi~~d~~-G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~- 277 (322)
T 2fp8_A 221 -----TAEVLVK-----------IP---N-PGNIKRNAD-GHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPL- 277 (322)
T ss_dssp -----CEEEEEE-----------CS---S-EEEEEECTT-SCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEEC-
T ss_pred -----ccceEEe-----------CC---C-CCCeEECCC-CCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEEC-
Confidence 0111111 11 1 567889985 565555443 4667888764 332221110
Q ss_pred CCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
+ .+.....++.+++ .+++.++++...+.|..+++..
T Consensus 278 -----------~-----~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 278 -----------P-----PPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp -----------C-----TTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred -----------C-----CCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 0 0100113566666 4565555555688999999876
No 259
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.39 E-value=0.0057 Score=71.87 Aligned_cols=120 Identities=13% Similarity=0.091 Sum_probs=72.1
Q ss_pred cCCC-cEEEEEEC-CCCCEEEEEeC-C----CcEEEEeCCCC-eEEEEecccCCcceEEEEEecCCCCcEEEEEECC---
Q 004468 48 GHQG-CVNAISWN-SKGSLLISGSD-D----THINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGD--- 116 (751)
Q Consensus 48 gH~~-~V~~l~~s-~dg~~LaSgs~-D----g~I~IWd~~~~-~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D--- 116 (751)
+|.- .+...+|| |||++||-+.. + .+|+++|+.++ +.+... -......+.|+|+ ++.|+....|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~---~~~~~~~~~WspD--g~~l~y~~~d~~~ 244 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK---VSGTNGEIVWGPD--HTSLFYVTKDETL 244 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC---EEEECSCCEECSS--TTEEEEEEECTTC
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc---ccCceeeEEEecC--CCEEEEEEECCCC
Confidence 3443 67889999 99998885432 2 35999999988 632211 0122457899999 6666665555
Q ss_pred --CcEEEEECCCCCCCCCCCCCCCCceeec-ccCCceeEEEEecCCCCEEEEEeC--CCcEEEEecCCC
Q 004468 117 --AEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQG 180 (751)
Q Consensus 117 --g~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~l~s~s~--Dg~I~iwDlr~~ 180 (751)
..|.++++.+... +....+. .+......+.|+|++..++++... ...|.++|+.++
T Consensus 245 ~~~~v~~~~lgt~~~--------~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 245 RENKVWRHVMGKLQS--------EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp CEEEEEEEETTSCGG--------GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred CCCEEEEEECCCCch--------hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 3577888765321 1122222 223445678999954434444432 235677777664
No 260
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.37 E-value=0.02 Score=60.74 Aligned_cols=106 Identities=13% Similarity=0.108 Sum_probs=67.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEecccC--------CcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCC
Q 004468 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGH--------SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL 132 (751)
Q Consensus 61 dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h--------~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~ 132 (751)
.+..|..++.++.|..+|..+++.+..+.... ...+.+.-. .. +..|+.++.++.|..+|..++.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~v~v~~~~g~l~a~d~~tG~---- 124 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVT-VS--GGHVYIGSEKAQVYALNTSDGT---- 124 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEE-EE--TTEEEEEETTSEEEEEETTTCC----
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCce-Ee--CCEEEEEcCCCEEEEEECCCCC----
Confidence 35678888889999999999999887763321 122322222 22 4678888899999999998652
Q ss_pred CCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004468 133 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (751)
Q Consensus 133 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~ 182 (751)
.+................ + ..++.++.++.|..+|.++++.
T Consensus 125 ------~~W~~~~~~~~~~~p~~~--~-~~v~v~~~~g~l~~~d~~tG~~ 165 (376)
T 3q7m_A 125 ------VAWQTKVAGEALSRPVVS--D-GLVLIHTSNGQLQALNEADGAV 165 (376)
T ss_dssp ------EEEEEECSSCCCSCCEEE--T-TEEEEECTTSEEEEEETTTCCE
T ss_pred ------EEEEEeCCCceEcCCEEE--C-CEEEEEcCCCeEEEEECCCCcE
Confidence 232332222211222222 3 3666788899999999988763
No 261
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.30 E-value=0.016 Score=57.83 Aligned_cols=173 Identities=12% Similarity=0.122 Sum_probs=101.1
Q ss_pred EEEEecccCCcceEEEEEecCCCCcEEEEEECCC--cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCC
Q 004468 84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH 161 (751)
Q Consensus 84 ~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg--~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 161 (751)
.+.++...-..-...+.|+ + +.++++++.+| .|+++|+.++ +.+..+.- ..........+.+.+
T Consensus 33 vv~~~phd~~~ftqGL~~~-~--~~LyestG~~g~S~v~~vD~~Tg----------kv~~~~~l-~~~~FgeGit~~g~~ 98 (262)
T 3nol_A 33 IVHSYPHDTKAFTEGFFYR-N--GYFYESTGLNGRSSIRKVDIESG----------KTLQQIEL-GKRYFGEGISDWKDK 98 (262)
T ss_dssp EEEEEECCTTCEEEEEEEE-T--TEEEEEEEETTEEEEEEECTTTC----------CEEEEEEC-CTTCCEEEEEEETTE
T ss_pred EEEEecCCCCcccceEEEE-C--CEEEEECCCCCCceEEEEECCCC----------cEEEEEec-CCccceeEEEEeCCE
Confidence 4455522223334788888 5 67778888776 8999999975 33344332 223333333343556
Q ss_pred EEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEE
Q 004468 162 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR 241 (751)
Q Consensus 162 ~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~Ir 241 (751)
+++..-.++.+.+||..+.+... . +.. +. ....++++ +..|+++..++.|.
T Consensus 99 ly~ltw~~~~v~v~D~~t~~~~~--------------t--------i~~-~~-----eG~glt~d-g~~L~~SdGs~~i~ 149 (262)
T 3nol_A 99 IVGLTWKNGLGFVWNIRNLRQVR--------------S--------FNY-DG-----EGWGLTHN-DQYLIMSDGTPVLR 149 (262)
T ss_dssp EEEEESSSSEEEEEETTTCCEEE--------------E--------EEC-SS-----CCCCEEEC-SSCEEECCSSSEEE
T ss_pred EEEEEeeCCEEEEEECccCcEEE--------------E--------EEC-CC-----CceEEecC-CCEEEEECCCCeEE
Confidence 66666678999999998876320 0 000 00 11223343 34555555578999
Q ss_pred EEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccee
Q 004468 242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM 316 (751)
Q Consensus 242 iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~ 316 (751)
++|..+.+.+..+... ..+..-..++.+.|. +|+..+....++.|.+.|..+++....
T Consensus 150 ~iDp~T~~v~~~I~V~----------------~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~ 207 (262)
T 3nol_A 150 FLDPESLTPVRTITVT----------------AHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGI 207 (262)
T ss_dssp EECTTTCSEEEEEECE----------------ETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEE
T ss_pred EEcCCCCeEEEEEEec----------------cCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEE
Confidence 9999987755443210 011111135567776 776554455688999999999764433
No 262
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.29 E-value=0.0022 Score=66.50 Aligned_cols=194 Identities=12% Similarity=0.095 Sum_probs=116.4
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEEC
Q 004468 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (751)
Q Consensus 45 ~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~ 124 (751)
.+..+...+.++...++|. |..|+.++.|..+|.. ++.+..+ ......+.++.+.++ +.+++.. +.|..+|
T Consensus 131 ~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~-~~~~~~~~~~~~d~~--g~l~v~t---~~l~~~d- 201 (330)
T 3hxj_A 131 RFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRF-KTNDAITSAASIGKD--GTIYFGS---DKVYAIN- 201 (330)
T ss_dssp EEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEE-ECSSCCCSCCEECTT--CCEEEES---SSEEEEC-
T ss_pred EEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEE-ecCCCceeeeEEcCC--CEEEEEe---CEEEEEC-
Confidence 3333444556666776777 5557788999999998 7777666 344556677777666 5555443 7888898
Q ss_pred CCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004468 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (751)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (751)
..+ +.+..+......+.++...+ ++ .++.++.++.|..+|. ++. .++....+
T Consensus 202 ~~g----------~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~~gl~~~~~-~g~--------------~~~~~~~~- 253 (330)
T 3hxj_A 202 PDG----------TEKWNFYAGYWTVTRPAISE-DG-TIYVTSLDGHLYAINP-DGT--------------EKWRFKTG- 253 (330)
T ss_dssp TTS----------CEEEEECCSSCCCSCCEECT-TS-CEEEEETTTEEEEECT-TSC--------------EEEEEECS-
T ss_pred CCC----------cEEEEEccCCcceeceEECC-CC-eEEEEcCCCeEEEECC-CCC--------------EeEEeeCC-
Confidence 432 22334444456678888876 43 4557778888888874 222 12221111
Q ss_pred eecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEE
Q 004468 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (751)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~ 284 (751)
...+.++.+.+ ...|.+++.++.|..+|. +++.+..+. + ....+.+
T Consensus 254 ----------~~~~~~~~~~~--~g~l~v~t~~ggl~~~d~-~g~~~~~~~----------------~-----~~~~~~~ 299 (330)
T 3hxj_A 254 ----------KRIESSPVIGN--TDTIYFGSYDGHLYAINP-DGTEKWNFE----------------T-----GSWIIAT 299 (330)
T ss_dssp ----------SCCCSCCEECT--TSCEEEECTTCEEEEECT-TSCEEEEEE----------------C-----SSCCCSC
T ss_pred ----------CCccccceEcC--CCeEEEecCCCCEEEECC-CCcEEEEEE----------------c-----CCccccc
Confidence 01112234443 346777888889999985 443222110 0 0113566
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 285 VTFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 285 v~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
+..+++|. |.+++.+|.+++.....
T Consensus 300 ~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 300 PVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp CEECTTCC-EEEECTTSCEEEEEC--
T ss_pred eEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 77778876 67789999999988765
No 263
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.27 E-value=0.068 Score=55.33 Aligned_cols=183 Identities=11% Similarity=0.057 Sum_probs=112.9
Q ss_pred CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCC-CCCCCCCCCCCceeecccCCce
Q 004468 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS-GRGLDDNAITPSALYQCHTRRV 150 (751)
Q Consensus 72 g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~-~~~~~~~~~~~~~~~~~h~~~V 150 (751)
..|+..|+.+......+ .....+..++|.+.. +.++++-...+.|..+++.... +. .....+...-..+
T Consensus 10 ~~I~~i~~~~~~~~~~~--~~~~~p~g~~~d~~~-~~ly~~D~~~~~I~~~~~~g~~~~~-------~~~~~~~~~~~~p 79 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLI--PNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVS-------SYDTVISRDIQAP 79 (316)
T ss_dssp SSEEEEETTSCCCEEEE--CSCSSEEEEEEETTT-TEEEEEETTTTEEEEEEC---------------CEEEECSSCSCC
T ss_pred CeEEEEECCCcceEehh--cCCCceEEEEEEeCC-CEEEEEECCCCcEEEEECCCCCCCc-------ccEEEEeCCCCCc
Confidence 46888898876655444 234568899999873 4566666677899999987410 00 1111222223456
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcE
Q 004468 151 KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHL 230 (751)
Q Consensus 151 ~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~ 230 (751)
..+++.+.+++++++-...+.|.++|+.... ...+... .......+++.|.++.+
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~------------~~~~~~~-------------~~~~P~~iavdp~~g~l 134 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVK------------RKTLFRE-------------NGSKPRAIVVDPVHGFM 134 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSS------------EEEEEEC-------------TTCCEEEEEEETTTTEE
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCc------------eEEEEEC-------------CCCCcceEEeCCCCCEE
Confidence 7899987677788888888999999976432 1112110 12346789999965655
Q ss_pred EEEEeCC-CeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEe-CCCcEEEEEC
Q 004468 231 LLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDV 308 (751)
Q Consensus 231 l~sgs~D-~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s-~d~~I~lwdl 308 (751)
+++.... +.|..+++.... . +.+... .....+.++++|++..|+.+. ..+.|+.+|+
T Consensus 135 y~~d~~~~~~I~~~~~dG~~-~-------------~~~~~~-------~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~ 193 (316)
T 1ijq_A 135 YWTDWGTPAKIKKGGLNGVD-I-------------YSLVTE-------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 193 (316)
T ss_dssp EEEECSSSCEEEEEETTSCC-E-------------EEEECS-------SCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEEccCCCCeEEEEcCCCCC-e-------------EEEEEC-------CCCCceEEEEeccCCEEEEEECCCCeEEEEec
Confidence 5555443 678888764211 1 001000 011378999999877766554 5679999999
Q ss_pred CC
Q 004468 309 NH 310 (751)
Q Consensus 309 ~~ 310 (751)
+.
T Consensus 194 dg 195 (316)
T 1ijq_A 194 NG 195 (316)
T ss_dssp TS
T ss_pred CC
Confidence 86
No 264
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.27 E-value=0.082 Score=61.93 Aligned_cols=226 Identities=7% Similarity=-0.032 Sum_probs=133.5
Q ss_pred CCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCC----eEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEE
Q 004468 49 HQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (751)
Q Consensus 49 H~~~V~~l~~s~d-g~~LaSgs~Dg~I~IWd~~~~----~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd 123 (751)
....+..|+|.+. +.++++-...+.|+.+++... .....+ .........|++.+.. +.++++-...+.|.+.+
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi-~~~l~~P~GLAvD~~~-~~LY~tD~~~~~I~v~~ 499 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVAD 499 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEE
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE-ecCCCCcceeeeeecC-CcEEEEecCCCeEEEEe
Confidence 3456778999984 455556666778888888642 122222 3344567789998873 46666777788999999
Q ss_pred CCCCCCCCCCCCCCCCceee-cccCCceeEEEEecCCCCEEEEEeCC-CcEEEEecCCCCCCCCCCCCCCccceEEEecc
Q 004468 124 LSRFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (751)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~l~s~s~D-g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~ 201 (751)
+... ...++ ...-.....|++.|..+.++|+-... +.|...++..... .++..
T Consensus 500 ldG~-----------~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~------------~~lv~-- 554 (791)
T 3m0c_C 500 TKGV-----------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------YSLVT-- 554 (791)
T ss_dssp TTSS-----------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------------EEEEC--
T ss_pred CCCC-----------eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce------------EEEEe--
Confidence 8742 12222 23345588999999777888876444 7788888764321 11211
Q ss_pred cCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccc
Q 004468 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 281 (751)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (751)
......+.|++.+.+++++++=.....|..+++...... .+ ... .+... .
T Consensus 555 -----------~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~-~v-------------~~~----~~~l~-~ 604 (791)
T 3m0c_C 555 -----------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TI-------------LED----EKRLA-H 604 (791)
T ss_dssp -----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EE-------------EEC----TTTTS-S
T ss_pred -----------CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE-EE-------------ecC----CCccC-C
Confidence 122467889999866666666566778999988543211 10 000 00001 2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeee-cCCCceeEEeCCC
Q 004468 282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT-VGDASKIMSFTPT 332 (751)
Q Consensus 282 vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~-~~~~~~~~~~sp~ 332 (751)
...|++.. +..+++-...+.|+..|..++........ ...+..+..|+|.
T Consensus 605 P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l~~~l~~P~~i~v~h~~ 655 (791)
T 3m0c_C 605 PFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNL 655 (791)
T ss_dssp EEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGG
T ss_pred CCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEeecCCCCceeEeeeccc
Confidence 45666633 24444555678999999877654444432 2334444445554
No 265
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.13 E-value=0.0056 Score=63.36 Aligned_cols=176 Identities=10% Similarity=0.061 Sum_probs=106.3
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCce
Q 004468 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 141 (751)
Q Consensus 62 g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~ 141 (751)
+..|..++.++.|..+|.. ++..... ..+...+.++...++ +. |..++.++.|..+|.. + +.+.
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~-~~~~~~~~~~~~~~~--g~-l~vgt~~~~l~~~d~~-g----------~~~~ 170 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRF-KTKKAIYATPIVSED--GT-IYVGSNDNYLYAINPD-G----------TEKW 170 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEE-ECSSCCCSCCEECTT--SC-EEEECTTSEEEEECTT-S----------CEEE
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEE-cCCCceeeeeEEcCC--CE-EEEEcCCCEEEEECCC-C----------CEeE
Confidence 4457778888999999988 7776666 344455666666655 44 5557778999999987 3 2233
Q ss_pred eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEE
Q 004468 142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC 221 (751)
Q Consensus 142 ~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i 221 (751)
.+......+.++.+.+ ++.++ .++ +.|..+| .+++ .++.... ....+.++
T Consensus 171 ~~~~~~~~~~~~~~d~-~g~l~-v~t--~~l~~~d-~~g~--------------~~~~~~~-----------~~~~~~~~ 220 (330)
T 3hxj_A 171 RFKTNDAITSAASIGK-DGTIY-FGS--DKVYAIN-PDGT--------------EKWNFYA-----------GYWTVTRP 220 (330)
T ss_dssp EEECSSCCCSCCEECT-TCCEE-EES--SSEEEEC-TTSC--------------EEEEECC-----------SSCCCSCC
T ss_pred EEecCCCceeeeEEcC-CCEEE-EEe--CEEEEEC-CCCc--------------EEEEEcc-----------CCcceece
Confidence 4444455667777765 44544 455 8888998 5543 1222111 11335666
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCC
Q 004468 222 DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE 301 (751)
Q Consensus 222 ~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~ 301 (751)
.+.++ + .|.+++.++.|..+|. ++..+..+. . .. . .+..+.+.++| .|.+++.++
T Consensus 221 ~~~~~-g-~l~v~t~~~gl~~~~~-~g~~~~~~~-------------~------~~-~-~~~~~~~~~~g-~l~v~t~~g 275 (330)
T 3hxj_A 221 AISED-G-TIYVTSLDGHLYAINP-DGTEKWRFK-------------T------GK-R-IESSPVIGNTD-TIYFGSYDG 275 (330)
T ss_dssp EECTT-S-CEEEEETTTEEEEECT-TSCEEEEEE-------------C------SS-C-CCSCCEECTTS-CEEEECTTC
T ss_pred EECCC-C-eEEEEcCCCeEEEECC-CCCEeEEee-------------C------CC-C-ccccceEcCCC-eEEEecCCC
Confidence 67763 3 5666777888888874 332221110 0 00 0 12234455566 577788888
Q ss_pred cEEEEEC
Q 004468 302 HVYLMDV 308 (751)
Q Consensus 302 ~I~lwdl 308 (751)
.|+.+|.
T Consensus 276 gl~~~d~ 282 (330)
T 3hxj_A 276 HLYAINP 282 (330)
T ss_dssp EEEEECT
T ss_pred CEEEECC
Confidence 9999996
No 266
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.12 E-value=0.0076 Score=64.01 Aligned_cols=182 Identities=12% Similarity=0.094 Sum_probs=106.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcc------eEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCC
Q 004468 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN------VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN 135 (751)
Q Consensus 62 g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~------V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~ 135 (751)
+..++.++.++.|..+|..+++.+.......... +..+.-.|.-.+..++.++.++.|..+|..++.
T Consensus 188 ~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~------- 260 (376)
T 3q7m_A 188 FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQ------- 260 (376)
T ss_dssp TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCC-------
T ss_pred CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCc-------
Confidence 3467778889999999999998887763221110 000111111014577778889999999998642
Q ss_pred CCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCc
Q 004468 136 AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQT 215 (751)
Q Consensus 136 ~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 215 (751)
.+.... ......+... + ..++.++.++.|..+|..+++. +|..... ..
T Consensus 261 ---~~w~~~--~~~~~~~~~~--~-~~l~~~~~~g~l~~~d~~tG~~--------------~w~~~~~----------~~ 308 (376)
T 3q7m_A 261 ---IMWKRE--LGSVNDFIVD--G-NRIYLVDQNDRVMALTIDGGVT--------------LWTQSDL----------LH 308 (376)
T ss_dssp ---EEEEEC--CCCEEEEEEE--T-TEEEEEETTCCEEEEETTTCCE--------------EEEECTT----------TT
T ss_pred ---EEeecc--CCCCCCceEE--C-CEEEEEcCCCeEEEEECCCCcE--------------EEeeccc----------CC
Confidence 222222 2234444443 3 4666788899999999988752 2321100 00
Q ss_pred cceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEE
Q 004468 216 LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVL 295 (751)
Q Consensus 216 ~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll 295 (751)
..+....+. +..|++++.++.|.++|..+++.+...... .... ...... .+..|+
T Consensus 309 ~~~~~~~~~---~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~----------------~~~~----~~~~~~--~~~~l~ 363 (376)
T 3q7m_A 309 RLLTSPVLY---NGNLVVGDSEGYLHWINVEDGRFVAQQKVD----------------SSGF----QTEPVA--ADGKLL 363 (376)
T ss_dssp SCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEECC----------------TTCB----CSCCEE--ETTEEE
T ss_pred CcccCCEEE---CCEEEEEeCCCeEEEEECCCCcEEEEEecC----------------CCcc----eeCCEE--ECCEEE
Confidence 011112222 357888999999999999987754332110 0000 011111 256788
Q ss_pred EEeCCCcEEEEE
Q 004468 296 LSYSGEHVYLMD 307 (751)
Q Consensus 296 ~~s~d~~I~lwd 307 (751)
+++.+|.|+.||
T Consensus 364 v~~~~G~l~~~~ 375 (376)
T 3q7m_A 364 IQAKDGTVYSIT 375 (376)
T ss_dssp EEBTTSCEEEEE
T ss_pred EEeCCCEEEEEe
Confidence 999999999997
No 267
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.10 E-value=0.11 Score=55.67 Aligned_cols=193 Identities=12% Similarity=0.066 Sum_probs=118.2
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceee
Q 004468 64 LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY 143 (751)
Q Consensus 64 ~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~ 143 (751)
+|+.+. ...|+..++........+ .....+..++|.+.. +.++++-...+.|+.+++....... .....+
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~--~~~~~~~~l~~d~~~-~~lywsD~~~~~I~~~~~~g~~~~~------~~~~~~ 154 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVS------SYDTVI 154 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEE--CSCSCEEEEEEETTT-TEEEEEETTTTEEEEEEC------C------CCEEEE
T ss_pred eeEEec-cceeEEEccCCcceeEec--cccCcceEEeeeecc-CceEEEecCCCeEEEEEcccCCCCC------cceEEE
Confidence 444443 357888888765444333 345678999999873 4555565667889999886421000 112233
Q ss_pred cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEE
Q 004468 144 QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI 223 (751)
Q Consensus 144 ~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~ 223 (751)
.........|++.+.+++++++-...+.|.+.++.... ...+... .......|++
T Consensus 155 ~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~------------~~~l~~~-------------~~~~P~~iav 209 (400)
T 3p5b_L 155 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK------------RKTLFRE-------------NGSKPRAIVV 209 (400)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS------------EEEEEEC-------------SSCCEEEEEE
T ss_pred eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCc------------eEEEEeC-------------CCCCcceEEE
Confidence 33445678899987677888888888999999887543 1122210 1234678999
Q ss_pred eCCCCcEEEEEeC-CCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEe-CCC
Q 004468 224 SSTRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGE 301 (751)
Q Consensus 224 sp~~~~~l~sgs~-D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s-~d~ 301 (751)
.|.++.++++-.. .+.|...++...... .+.... -...+.|++++++..|+.+- ..+
T Consensus 210 dp~~g~ly~td~~~~~~I~~~~~dG~~~~--------------~~~~~~-------l~~P~glavd~~~~~lY~aD~~~~ 268 (400)
T 3p5b_L 210 DPVHGFMYWTDWGTPAKIKKGGLNGVDIY--------------SLVTEN-------IQWPNGITLDLLSGRLYWVDSKLH 268 (400)
T ss_dssp ETTTTEEEEEECSSSCCEEEEETTSCSCE--------------EEECSS-------CSCEEEEEEETTTTEEEEEETTTT
T ss_pred ecccCeEEEEeCCCCCEEEEEeCCCCccE--------------EEEECC-------CCceEEEEEEeCCCEEEEEECCCC
Confidence 9965555555433 367888877532211 010000 11478999999887777664 478
Q ss_pred cEEEEECCCCC
Q 004468 302 HVYLMDVNHAG 312 (751)
Q Consensus 302 ~I~lwdl~~~~ 312 (751)
.|+.+|++...
T Consensus 269 ~I~~~d~dG~~ 279 (400)
T 3p5b_L 269 SISSIDVNGGN 279 (400)
T ss_dssp EEEEEETTSCC
T ss_pred EEEEEeCCCCc
Confidence 99999997643
No 268
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.10 E-value=0.083 Score=54.97 Aligned_cols=203 Identities=10% Similarity=0.120 Sum_probs=118.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC--CCc---E-EEEEEC--CCcEEEEECCCCCCCCC
Q 004468 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET--SDE---L-VVSGAG--DAEVRLFNLSRFSGRGL 132 (751)
Q Consensus 61 dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s--~~~---~-l~sgs~--Dg~V~vwd~~~~~~~~~ 132 (751)
...+++.....+-+.|||+ +|+.+..+ .. +.++.|..-|.- +|+ + ++|.-. +++|.+|++....+
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~-~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~--- 111 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSY-NT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG--- 111 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEE-CC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC---
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEc-cC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC---
Confidence 4456777778889999999 79998888 32 456777666631 022 2 334334 58999998853221
Q ss_pred CCCCCCCceeecc------cC-CceeEEEE--ecCCCC-EEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004468 133 DDNAITPSALYQC------HT-RRVKKLAV--EVGNPH-VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (751)
Q Consensus 133 ~~~~~~~~~~~~~------h~-~~V~~l~~--sp~~~~-~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~ 202 (751)
++..+.. .. ..+..+|+ +|..+. +++....+|.+.+|++.....- .-....+-.+.
T Consensus 112 ------~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g-------~~~~~lVR~f~- 177 (355)
T 3amr_A 112 ------TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNG-------YISGKKVRAFK- 177 (355)
T ss_dssp ------CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS-------CEEEEEEEEEE-
T ss_pred ------ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCC-------cccceEEEEec-
Confidence 1222211 11 56777888 664444 5677788899999998542100 00001111111
Q ss_pred CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccce
Q 004468 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (751)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v 282 (751)
....+-.|.+.+. ...|.++-.+.-|..||.+-..... ...+..+.. ++....+
T Consensus 178 -----------lgsq~EgcvvDd~-~g~Lyv~eEd~GIw~~da~p~~~~~--------~~~v~~~~~------g~l~aDv 231 (355)
T 3amr_A 178 -----------MNSQTEGMAADDE-YGRLYIAEEDEAIWKFSAEPDGGSN--------GTVIDRADG------RHLTRDI 231 (355)
T ss_dssp -----------CSSCEEEEEEETT-TTEEEEEETTTEEEEEECSTTSCSC--------CEEEEEBSS------SSBCSCE
T ss_pred -----------CCCCcceEEEcCC-CCeEEEecccceEEEEeCCcCCCCC--------ceEEEEecC------CccccCc
Confidence 1135678888884 6788999998888777755211000 001111111 1111137
Q ss_pred EEEEE--cCCCC-EEEEEe-CCCcEEEEECCC
Q 004468 283 THVTF--SPNGE-EVLLSY-SGEHVYLMDVNH 310 (751)
Q Consensus 283 t~v~f--spdg~-~Ll~~s-~d~~I~lwdl~~ 310 (751)
..|++ .++|+ ||++++ .++...+||...
T Consensus 232 EGLai~~~~~g~gyLivSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 232 EGLTIYYAADGKGYLMASSQGNSSYAIYDRQG 263 (355)
T ss_dssp EEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred ceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence 77777 56777 788887 478999999974
No 269
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.09 E-value=0.0065 Score=55.65 Aligned_cols=110 Identities=9% Similarity=-0.121 Sum_probs=92.1
Q ss_pred ccccCcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHh
Q 004468 355 EVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNAR 434 (751)
Q Consensus 355 ~~~~~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~ 434 (751)
.....|+....+...+...+..|. |..|+..|..++...+.. ...+.+.+.++...+- .-.|+....+++
T Consensus 28 al~l~p~~~~~~~~lg~~~~~~g~-~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~---~~~Ai~~~~~al 97 (151)
T 3gyz_A 28 INAIPDDMMDDIYSYAYDFYNKGR-IEEAEVFFRFLCIYDFYN------VDYIMGLAAIYQIKEQ---FQQAADLYAVAF 97 (151)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcc---HHHHHHHHHHHH
Confidence 344566777777888888888888 999999999999877655 4467777887776543 456888899999
Q ss_pred cCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCC
Q 004468 435 RIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSN 474 (751)
Q Consensus 435 ~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~ 474 (751)
.++|.++.+++.++.|+..+|++.+|..+++......|..
T Consensus 98 ~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 98 ALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999999999999998888864
No 270
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.05 E-value=0.048 Score=56.05 Aligned_cols=201 Identities=10% Similarity=0.076 Sum_probs=110.5
Q ss_pred CCcEEEEEECCCCCEEEEEeCCC--cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCC
Q 004468 50 QGCVNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (751)
Q Consensus 50 ~~~V~~l~~s~dg~~LaSgs~Dg--~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~ 127 (751)
.+.++.|++.++|+++++..... .|..++..+++...............++..+. +..+++-..++.|.++|....
T Consensus 71 ~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~--~~~~v~d~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 71 EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSD--TQYLTADSYRGAIWLIDVVQP 148 (306)
T ss_dssp SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSS--SEEEEEETTTTEEEEEETTTT
T ss_pred CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCC--CcEEEEECCCCeEEEEeCCCC
Confidence 35688999999999777664432 46667777776543221122222344554444 445555556888888887642
Q ss_pred CCCCC-CCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC-CCCCCCCCCCCCccceEEEecccCce
Q 004468 128 SGRGL-DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ-GSSCPPAGSSHQECRNILLDLRCGAK 205 (751)
Q Consensus 128 ~~~~~-~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~-~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (751)
.+... ....... ......-.....| +|+++.++++-...+.|..||+.. +... ....+...
T Consensus 149 ~~~v~~~~~~~~~-~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~---------~~~~~~~~----- 211 (306)
T 2p4o_A 149 SGSIWLEHPMLAR-SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPG---------EPEIFVEQ----- 211 (306)
T ss_dssp EEEEEEECGGGSC-SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBC---------CCEEEEES-----
T ss_pred cEeEEEECCcccc-ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCC---------ccEEEecc-----
Confidence 11100 0000000 0000111234455 775556777777889999999875 2210 01111110
Q ss_pred ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEE
Q 004468 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (751)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v 285 (751)
.....+++.++ ++++++....+.|.++|.. ++... +... + . + ....+++
T Consensus 212 ----------~~P~gi~vd~d-G~l~va~~~~~~V~~~~~~-G~~~~-----------~~~~-~--~---~--~~~p~~~ 260 (306)
T 2p4o_A 212 ----------TNIDDFAFDVE-GNLYGATHIYNSVVRIAPD-RSTTI-----------IAQA-E--Q---G--VIGSTAV 260 (306)
T ss_dssp ----------CCCSSEEEBTT-CCEEEECBTTCCEEEECTT-CCEEE-----------EECG-G--G---T--CTTEEEE
T ss_pred ----------CCCCCeEECCC-CCEEEEeCCCCeEEEECCC-CCEEE-----------Eeec-c--c---c--cCCceEE
Confidence 12456788885 6777776777889999864 32110 0000 0 0 0 0138899
Q ss_pred EEc---CCCCEEEEEeCC
Q 004468 286 TFS---PNGEEVLLSYSG 300 (751)
Q Consensus 286 ~fs---pdg~~Ll~~s~d 300 (751)
+|. |+++.|+++...
T Consensus 261 a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 261 AFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp EECCSTTTTTEEEEEECT
T ss_pred EEecccCCCCEEEEECCC
Confidence 999 898888877654
No 271
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.02 E-value=0.0095 Score=68.79 Aligned_cols=115 Identities=16% Similarity=0.078 Sum_probs=72.5
Q ss_pred EEEECC-CCCEEEEEeCCC-----------cEEEEeCCCCeE--EEEecccCCcceEEEEEecCCCCcEEEEEEC-CCcE
Q 004468 55 AISWNS-KGSLLISGSDDT-----------HINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAG-DAEV 119 (751)
Q Consensus 55 ~l~~s~-dg~~LaSgs~Dg-----------~I~IWd~~~~~~--~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~-Dg~V 119 (751)
.+++.+ +|++++.|+.+. .+.+||+.+++. +..+...+.....++++.++ +.+++.|+. +..+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~--g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN--GQIVVTGGNDAKKT 267 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT--SCEEEECSSSTTCE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCC--CCEEEeCCCCCCce
Confidence 556667 899999988653 588999887653 23332334444445778887 789998884 5689
Q ss_pred EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe-CC-----CcEEEEecCCCC
Q 004468 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-ED-----GTLRQHDFRQGS 181 (751)
Q Consensus 120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~D-----g~I~iwDlr~~~ 181 (751)
.+||..+..-. .+..+..... -.++++.+ ++++++.|+ .+ ..+.+||..+.+
T Consensus 268 ~~yd~~t~~W~--------~~~~~~~~R~-~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 268 SLYDSSSDSWI--------PGPDMQVARG-YQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEEEGGGTEEE--------ECCCCSSCCS-SCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred EEecCcCCcee--------ECCCCCcccc-ccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 99999854211 1111111111 12344555 668888888 44 568999987653
No 272
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.00 E-value=0.012 Score=67.97 Aligned_cols=71 Identities=8% Similarity=0.146 Sum_probs=52.3
Q ss_pred EEEECCCCCEEEEEeCCCc-------------------EEEEeCCCCeEEEEeccc-CC-------cceEEEEEecCCCC
Q 004468 55 AISWNSKGSLLISGSDDTH-------------------INVWSYSSRKLLHSIETG-HS-------ANVFCTKFVPETSD 107 (751)
Q Consensus 55 ~l~~s~dg~~LaSgs~Dg~-------------------I~IWd~~~~~~~~~l~~~-h~-------~~V~~v~fsp~s~~ 107 (751)
.+++.+++.++..++.++. |..+|..+|+.+..+... |. ..+....+..+ |
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~--G 311 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNID--G 311 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEET--T
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccC--C
Confidence 4788888888888877763 999999999998887443 22 23333333334 4
Q ss_pred c---EEEEEECCCcEEEEECCCC
Q 004468 108 E---LVVSGAGDAEVRLFNLSRF 127 (751)
Q Consensus 108 ~---~l~sgs~Dg~V~vwd~~~~ 127 (751)
+ .|+.++.+|.++++|..++
T Consensus 312 ~~~~~v~~~~~~G~l~~lD~~tG 334 (668)
T 1kv9_A 312 KPRKVLMQAPKNGFFYVLDRTNG 334 (668)
T ss_dssp EEEEEEEECCTTSEEEEEETTTC
T ss_pred cEEEEEEEECCCCEEEEEECCCC
Confidence 4 6889999999999999865
No 273
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.99 E-value=0.0076 Score=54.78 Aligned_cols=110 Identities=15% Similarity=-0.010 Sum_probs=89.0
Q ss_pred cCcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCC
Q 004468 358 TGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRID 437 (751)
Q Consensus 358 ~~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~ 437 (751)
..+.....+...+...+..|. |..|+..+..++...+.. ...+.+++.++...+ +.-.|+..+.+++.++
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g---~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGX-YEDAHXVFQALCVLDHYD------SRFFLGLGACRQAMG---QYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHS
T ss_pred CCHhhHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCccc------HHHHHHHHHHHHHHh---hHHHHHHHHHHHHhcC
Confidence 345556666777788888888 999999999999876654 345667777776543 3556888999999999
Q ss_pred CCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468 438 SSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (751)
Q Consensus 438 ~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~ 477 (751)
|.++.+++.++.++..+|++.+|..++.......|.....
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 9999999999999999999999999999988887765544
No 274
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.95 E-value=0.0025 Score=74.06 Aligned_cols=205 Identities=6% Similarity=-0.036 Sum_probs=117.5
Q ss_pred CcEEEEEECCCCCEEE-EEeCCCcEEEEeCCC---CeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCC
Q 004468 51 GCVNAISWNSKGSLLI-SGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (751)
Q Consensus 51 ~~V~~l~~s~dg~~La-Sgs~Dg~I~IWd~~~---~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~ 126 (751)
..+..|+|++.+..|. +-...+.|..+++.. +.....+..........|++.+.. +.++++-...+.|.+.++..
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~-g~LY~tD~~~~~I~v~d~dg 484 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKG 484 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS-SBCEECCTTTSCEEEEBSSS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC-CcEEEEeccCCeEEEEecCC
Confidence 3456889998665554 444567899998875 111112211222345667887653 56666666678899999874
Q ss_pred CCCCCCCCCCCCCceee-cccCCceeEEEEecCCCCEEEEEeCC-CcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004468 127 FSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (751)
Q Consensus 127 ~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~l~s~s~D-g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (751)
. ....+ .........|++.|.++.++++-... +.|..+++..... .++..
T Consensus 485 ~-----------~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~------------~~l~~----- 536 (699)
T 1n7d_A 485 V-----------KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------YSLVT----- 536 (699)
T ss_dssp C-----------CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC------------CEESC-----
T ss_pred C-----------ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe------------eEEEe-----
Confidence 2 12222 22234567889998777777765443 7787777654321 11110
Q ss_pred eecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEE
Q 004468 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (751)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~ 284 (751)
......+.|+|+|.+++++++-...+.|..+|+..... ..+ .... .... ....
T Consensus 537 --------~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~-------------~~~~-~~~~----~P~g 589 (699)
T 1n7d_A 537 --------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTI-------------LEDE-KRLA----HPFS 589 (699)
T ss_dssp --------SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEE-------------CCCS-SSCS----SCCC
T ss_pred --------CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce-EEE-------------EecC-CcCC----CceE
Confidence 01234567899997677777777788999999864221 111 0000 0001 1334
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468 285 VTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 285 v~fspdg~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
|++..+ ..+++....+.|..+|..+++
T Consensus 590 lavd~~-~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 590 LAVFED-KVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp CEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred eEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence 555544 444455567899999987754
No 275
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.95 E-value=0.098 Score=54.23 Aligned_cols=185 Identities=7% Similarity=0.031 Sum_probs=112.8
Q ss_pred CCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCce
Q 004468 71 DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV 150 (751)
Q Consensus 71 Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V 150 (751)
...|+..++........+.......+..++|.+.. +.++.+-...+.|..+++..... ....+...-...
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~-~~lyw~D~~~~~I~r~~~~g~~~---------~~~~~~~~l~~p 81 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSH-GLIYWSDVSEEAIKRTEFNKTES---------VQNVVVSGLLSP 81 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGG-TEEEEEETTTTEEEEEETTSSSC---------CCEEEEECCSCC
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCC-CEEEEEECCCCcEEEEEccCCCc---------eEEEEcCCCCCc
Confidence 35788899876531111112223467899999874 55666666778899999875311 111222223456
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcE
Q 004468 151 KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHL 230 (751)
Q Consensus 151 ~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~ 230 (751)
..+++.+.++.++++-...+.|.++++..... .++.. ........+++.|.++.+
T Consensus 82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~------------~~l~~-------------~~~~~P~giavdp~~g~l 136 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLR------------KVLFW-------------QELDQPRAIALDPSSGFM 136 (318)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEEC-------------SSCSSEEEEEEEGGGTEE
T ss_pred cEEEEEcCCCeEEEEECCCCEEEEEECCCCcE------------EEEEe-------------CCCCCccEEEEeCCCCEE
Confidence 78999876778888888889999999865321 11211 112346789999865555
Q ss_pred EEEEe-CCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEE-eCCCcEEEEEC
Q 004468 231 LLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDV 308 (751)
Q Consensus 231 l~sgs-~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~-s~d~~I~lwdl 308 (751)
+++-. ..+.|..+++.... ... +... + -...+.++|+|++..|+.+ +..+.|+.+|+
T Consensus 137 y~td~~~~~~I~r~~~dG~~-~~~-------------~~~~-----~--l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~ 195 (318)
T 3sov_A 137 YWTDWGEVPKIERAGMDGSS-RFI-------------IINS-----E--IYWPNGLTLDYEEQKLYWADAKLNFIHKSNL 195 (318)
T ss_dssp EEEECSSSCEEEEEETTSCS-CEE-------------EECS-----S--CSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEEecCCCCEEEEEEcCCCC-eEE-------------EEEC-----C--CCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence 55442 35778888775321 100 0000 0 1136899999977766655 45789999999
Q ss_pred CCC
Q 004468 309 NHA 311 (751)
Q Consensus 309 ~~~ 311 (751)
+..
T Consensus 196 dG~ 198 (318)
T 3sov_A 196 DGT 198 (318)
T ss_dssp TSC
T ss_pred CCC
Confidence 763
No 276
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.90 E-value=0.0044 Score=68.22 Aligned_cols=120 Identities=14% Similarity=0.097 Sum_probs=91.9
Q ss_pred chhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCC---------CchhhhhHhHHHHHhhcccccchhhhHHHhhH
Q 004468 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIG---------PMLRHECLCIRAALLLKRKWKNDAQMAIRDCY 431 (751)
Q Consensus 361 ~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~---------~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~ 431 (751)
.....+...++..+..++ |..|+..|..+|...+.... ......+|.++|.++++.+ +...|+.+|.
T Consensus 266 ~~a~~~~~~G~~~~~~g~-~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g---~~~~A~~~~~ 341 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGK-YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR---EYTKAVECCD 341 (457)
T ss_dssp HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHHH
Confidence 444566677777888888 99999999999987665421 1112357889999988765 4567999999
Q ss_pred HHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHH
Q 004468 432 NARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENI 484 (751)
Q Consensus 432 ~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~ 484 (751)
+|+.++|.+.+++++++.++..++++.+|..++.......|........+..+
T Consensus 342 ~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 342 KALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHH
T ss_pred HHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999776544444333
No 277
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.84 E-value=0.16 Score=59.34 Aligned_cols=187 Identities=12% Similarity=0.070 Sum_probs=115.2
Q ss_pred CCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCce
Q 004468 71 DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV 150 (751)
Q Consensus 71 Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V 150 (751)
...|+..++........+ .....+..|+|.+.. +.++++-...+.|+.+++....... .....+......+
T Consensus 403 ~~~Ir~i~l~~~~~~~l~--~~~~~~~gl~~d~~~-~~lY~sD~~~~~I~~~~l~g~~~~~------~~~~vi~~~l~~P 473 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVS------SYDTVISRDIQAP 473 (791)
T ss_dssp BSSEEEECTTSCCCEEEE--CSCSSEEEEEEETTT-TEEEEEETTTTEEEEEEC--------------CEEEECSSCSCC
T ss_pred ccceeEeeccCCcceeee--cCCCceEEEeecccC-CeeEEeeccceeEEEEeccCCCCCc------ceeEEEecCCCCc
Confidence 456777787655443333 335668899999863 5666666667889999887421000 1122333344567
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcE
Q 004468 151 KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHL 230 (751)
Q Consensus 151 ~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~ 230 (751)
..|++.+.+++++|+-...+.|.+.++.... ..++.. ........|++.|.++.+
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~------------~~~l~~-------------~~l~~P~gIaVDp~~g~L 528 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVK------------RKTLFR-------------ENGSKPRAIVVDPVHGFM 528 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSS------------EEEEEE-------------CTTCCEEEEEEETTTTEE
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCe------------EEEEEe-------------CCCCCcceEEEecCCCCE
Confidence 7899998677899998889999999987543 122221 012347789999965555
Q ss_pred EEEEeCC-CeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEe-CCCcEEEEEC
Q 004468 231 LLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDV 308 (751)
Q Consensus 231 l~sgs~D-~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s-~d~~I~lwdl 308 (751)
+++-... +.|...++..... ..+.... ....+.|++++.+..|+.+- ..+.|..+++
T Consensus 529 YwtD~g~~~~I~~~~~dG~~~--------------~~lv~~~-------l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~ 587 (791)
T 3m0c_C 529 YWTDWGTPAKIKKGGLNGVDI--------------YSLVTEN-------IQWPNGITLDLLSGRLYWVDSKLHSISSIDV 587 (791)
T ss_dssp EEEECSSSCEEEEEETTSCCE--------------EEEECSS-------CSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEecCCCCCeEEEEecCCCce--------------EEEEeCC-------CCCceEEEEecCCCeEEEEeCCCCcEEEEec
Confidence 5554333 6788888753221 1110000 11478999998777766664 4678999999
Q ss_pred CCCC
Q 004468 309 NHAG 312 (751)
Q Consensus 309 ~~~~ 312 (751)
....
T Consensus 588 dG~~ 591 (791)
T 3m0c_C 588 NGGN 591 (791)
T ss_dssp TSCS
T ss_pred CCCc
Confidence 7744
No 278
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.82 E-value=0.014 Score=55.62 Aligned_cols=126 Identities=17% Similarity=0.077 Sum_probs=96.6
Q ss_pred CcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCch----------hhhhHhHHHHHhhcccccchhhhHHH
Q 004468 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPML----------RHECLCIRAALLLKRKWKNDAQMAIR 428 (751)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~----------~~~~~~~ra~~~~~r~w~~d~y~al~ 428 (751)
.+.....+...+...+..+. |..|+..|.+++...+....... ...++.++|.+++..+ +.-.|+.
T Consensus 34 ~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~ 109 (198)
T 2fbn_A 34 KVQSAFDIKEEGNEFFKKNE-INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK---DYPKAID 109 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhc---CHHHHHH
Confidence 33445666777788888888 99999999999987665432111 1256778888887653 4567899
Q ss_pred hhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHHHHH
Q 004468 429 DCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI 488 (751)
Q Consensus 429 d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 488 (751)
.+.+++.++|.+.+++++++.++..++++.+|..++.......|........+..+...+
T Consensus 110 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 110 HASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988898765554444444443
No 279
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.80 E-value=0.028 Score=64.78 Aligned_cols=96 Identities=11% Similarity=0.154 Sum_probs=59.5
Q ss_pred cccchhhhccccccEEecc-CCCcEEEEEECCCCCEEEEEe-CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCC
Q 004468 30 LQMHSSLVRRLSQERELEG-HQGCVNAISWNSKGSLLISGS-DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSD 107 (751)
Q Consensus 30 l~~~~~~i~~~~~~~~L~g-H~~~V~~l~~s~dg~~LaSgs-~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~ 107 (751)
+..++....+...+..+.. +.....++++..+|++++.|+ .+..+.+||+.+.+....-.......-.++...++ +
T Consensus 221 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~d--g 298 (656)
T 1k3i_A 221 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD--G 298 (656)
T ss_dssp EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT--S
T ss_pred EEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecC--C
Confidence 4444444455545444432 333334577889999999998 45689999988765433211111222245566667 7
Q ss_pred cEEEEEE-CC-----CcEEEEECCCC
Q 004468 108 ELVVSGA-GD-----AEVRLFNLSRF 127 (751)
Q Consensus 108 ~~l~sgs-~D-----g~V~vwd~~~~ 127 (751)
++++.|+ .+ ..+.+||..+.
T Consensus 299 ~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 299 RVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp CEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred eEEEEeCcccCCcccccceEeCCCCC
Confidence 8888888 44 56899999764
No 280
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.79 E-value=0.36 Score=56.74 Aligned_cols=209 Identities=11% Similarity=0.072 Sum_probs=126.5
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccc-------CCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004468 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG-------HSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (751)
Q Consensus 50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~-------h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw 122 (751)
...|.+|...++|.+.+....+ -|.+||..+++..... .. ....|.++...++ |.+.+. ..+ -|.+|
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~-Gl~~~~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~--g~lWig-t~~-Gl~~~ 287 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGA-GLFLINPKTKEIKNYL-HSPSNPKSISSNYIRSLAMDSQ--NRLWIG-TFN-DLNIY 287 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSS-CEEEEETTTTEEEEEC-CCTTCTTSCSCSBEEEEEECTT--SCEEEE-ESS-CEEEE
T ss_pred CCeeEEEEEcCCCCEEEEECCC-CeEEEeCCCCeEEEee-cCCCCccccCCCeEEEEEEcCC--CCEEEE-eCC-hhheE
Confidence 4568888888888766654344 4889998876544322 21 2356999988877 665554 444 58888
Q ss_pred ECCCCCCCCCCCCCCCCceeec--------ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004468 123 NLSRFSGRGLDDNAITPSALYQ--------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (751)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~--------~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~ 194 (751)
|..... ...+. -....|.++...+ ++ .||.|+.++-|..|+..+....
T Consensus 288 ~~~~~~-----------~~~~~~~~~~~~~l~~~~i~~i~~D~-~g-~lWigt~~~Gl~~~~~~~~~~~----------- 343 (795)
T 4a2l_A 288 HEGTDS-----------FASYSSNPVENGSLSQRSVRSIFMDS-QG-GMWLGTYFGGLNYYHPIRNRFK----------- 343 (795)
T ss_dssp ETTTTE-----------EEEECCCTTSTTSCSSSCEEEEEECT-TS-CEEEEESSSCEEEECGGGGSSE-----------
T ss_pred cCCCCe-----------EEEEecCCCCCCCCCCCcEEEEEEeC-Cc-CEEEEECCCCeEEeCCCcccce-----------
Confidence 876431 11111 1245789998876 33 4778898888999987654311
Q ss_pred eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004468 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (751)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (751)
.+..... ...-....|.++...++ + .|.+|..++-|..||..+.... .+.......
T Consensus 344 --~~~~~~~------~~~l~~~~V~~i~~d~~-g-~lWiGt~~~Gl~~~~~~~~~~~--------------~~~~~~~~~ 399 (795)
T 4a2l_A 344 --NIRNIPY------KNSLSDNVVSCIVEDKD-K-NLWIGTNDGGLNLYNPITQRFT--------------SYTLQEDES 399 (795)
T ss_dssp --EECCCTT------SSSCSCSSEEEEEECTT-S-CEEEEESSSCEEEECTTTCCEE--------------EECCC----
T ss_pred --EEcCCCC------CCCCCCCeeEEEEECCC-C-CEEEEECCCCeEEEcCCCCcEE--------------EEecCCCCc
Confidence 0000000 00002345888888774 3 4666888878999998754311 110000000
Q ss_pred C-CccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468 275 H-GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 275 ~-g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
. +-....|.++...++|+.|.+|+.++.|++||..++.
T Consensus 400 ~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~ 438 (795)
T 4a2l_A 400 ARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ 438 (795)
T ss_dssp --CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC
T ss_pred ccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc
Confidence 0 0111248999999999867788888889999988753
No 281
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.79 E-value=0.0056 Score=54.03 Aligned_cols=101 Identities=10% Similarity=0.024 Sum_probs=82.2
Q ss_pred hHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcc
Q 004468 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (751)
Q Consensus 363 ~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~ 442 (751)
.......++..+..|+ |..|+..|.++|...+.. ...|.+++.+++..+ +.-.|+.++.+++.++|....
T Consensus 8 A~a~~~lG~~~~~~~~-~~~A~~~y~~Al~~~p~~------~~~~~nlg~~~~~~~---~~~~A~~~~~~al~~~~~~~~ 77 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKD-FEKAHVHYDKAIELDPSN------ITFYNNKAAVYFEEK---KFAECVQFCEKAVEVGRETRA 77 (127)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHhHHHHHHHhh---hHHHHHHHHHHHHHhCcccch
Confidence 3445567778888888 999999999999877654 457889999998764 456799999999999988764
Q ss_pred -------hHHHHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004468 443 -------AHLYMSEALEQLCKYKEALDFAIAAQCLDPS 473 (751)
Q Consensus 443 -------a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~ 473 (751)
+++++..++..++.+.+|+.+........|.
T Consensus 78 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 78 DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 6777888888999999999998887776664
No 282
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.75 E-value=0.008 Score=64.05 Aligned_cols=123 Identities=22% Similarity=0.211 Sum_probs=94.0
Q ss_pred hhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCC----------CCchhhhhHhHHHHHhhcccccchhhhHHHhhH
Q 004468 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGI----------GPMLRHECLCIRAALLLKRKWKNDAQMAIRDCY 431 (751)
Q Consensus 362 ~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~----------~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~ 431 (751)
....+...++..+..++ |..|+..|..++...+... .......+|.++|.++++.+ +...|+..+.
T Consensus 222 ~a~~~~~~g~~~~~~g~-~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g---~~~~A~~~~~ 297 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQN-WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS---DWQGAVDSCL 297 (370)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhcc---CHHHHHHHHH
Confidence 34556677777888888 9999999999987332210 11122347788888888654 3567899999
Q ss_pred HHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHHHHH
Q 004468 432 NARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI 488 (751)
Q Consensus 432 ~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 488 (751)
+|+.++|.+.+++++++.++..++++.+|+.+++......|........+..+...+
T Consensus 298 ~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 298 EALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354 (370)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998776555544444443
No 283
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.71 E-value=0.12 Score=56.24 Aligned_cols=213 Identities=10% Similarity=0.006 Sum_probs=118.3
Q ss_pred cEEEEEECCC---CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC---Cc-EEEEEC
Q 004468 52 CVNAISWNSK---GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AE-VRLFNL 124 (751)
Q Consensus 52 ~V~~l~~s~d---g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D---g~-V~vwd~ 124 (751)
....|+|+|+ |.++++-.. +.|+.+|..++...... ........++|.++ +.++++.... .. +...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~--~~~~~P~giavd~d--G~lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKT--TNIGQCADVNFTLN--GDMVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEEC--CCCSCEEEEEECTT--CCEEEEECCSCTTSEEEEEECG
T ss_pred CCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEee--cCCCCccEEEECCC--CCEEEEcCCCCcccceEEEEEC
Confidence 4678999985 555544333 89999999877665443 34456899999999 6755554321 12 222222
Q ss_pred CCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004468 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (751)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (751)
... . .....+. .-.....+++.|.++.++++-..++.|+.+|..++... ..+....
T Consensus 215 ~~~---~------~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~-----------~~~~~~~--- 270 (433)
T 4hw6_A 215 ASG---F------TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT-----------EEEVMMD--- 270 (433)
T ss_dssp GGT---T------CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE-----------EEEEECS---
T ss_pred CCC---e------ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE-----------EEEeccC---
Confidence 210 0 1011121 23445678898867788777777888999998755410 0111100
Q ss_pred eecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCC--CCc--cccCCCCCCCCccccccccccccCCcccc
Q 004468 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML--PPL--TSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (751)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (751)
....-..++|+|++..++++-...+.|+.++.... ... ..+....... -+..... .. ..-.
T Consensus 271 ---------~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~----g~~dg~~-~~-a~~~ 335 (433)
T 4hw6_A 271 ---------TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSP----GWVDGMG-TG-ARLW 335 (433)
T ss_dssp ---------CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCC----CCBCEEG-GG-SBCS
T ss_pred ---------CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCC----ccCCCcc-cc-eEEc
Confidence 01123469999964335566666789999886531 110 0000000000 0000000 00 0011
Q ss_pred ceEEEEE---------cCCCCEEEEEeCCCcEEEEEC
Q 004468 281 HLTHVTF---------SPNGEEVLLSYSGEHVYLMDV 308 (751)
Q Consensus 281 ~vt~v~f---------spdg~~Ll~~s~d~~I~lwdl 308 (751)
....+++ .++|..+++-...+.|+.++.
T Consensus 336 ~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 336 GPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp SEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 3678999 788887777777889999985
No 284
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.70 E-value=0.017 Score=51.76 Aligned_cols=110 Identities=13% Similarity=-0.036 Sum_probs=88.5
Q ss_pred cCcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCC
Q 004468 358 TGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRID 437 (751)
Q Consensus 358 ~~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~ 437 (751)
..+.....+...+...+..|. |..|+..+..++...+.. ...+.+.+.++... |+.-.|+....+++.++
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGK-WDDAQKIFQALCMLDHYD------ARYFLGLGACRQSL---GLYEQALQSYSYGALMD 82 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHH---hhHHHHHHHHHHHHhcC
Confidence 345556667777888888888 999999999999877654 34566677776654 34567899999999999
Q ss_pred CCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468 438 SSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (751)
Q Consensus 438 ~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~ 477 (751)
|.++.+++.++.++..+|++.+|..++.......|.....
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcch
Confidence 9999999999999999999999999999888777765443
No 285
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.69 E-value=0.046 Score=63.10 Aligned_cols=173 Identities=13% Similarity=0.123 Sum_probs=89.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC------CCcEEEEECCCCCCCCC-CC
Q 004468 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG------DAEVRLFNLSRFSGRGL-DD 134 (751)
Q Consensus 62 g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~------Dg~V~vwd~~~~~~~~~-~~ 134 (751)
+..|+.++.|+.|..+|..+|+.+..+..........+..+|--.+..++.+.. ++.|..+|..++...-. ..
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 457888889999999999999998887432211111111111000234444432 58999999986532110 00
Q ss_pred CCCCCce------------ee--------cccCCceeEEEEecCCCCEEEEEeCCCc-------------------EEEE
Q 004468 135 NAITPSA------------LY--------QCHTRRVKKLAVEVGNPHVVWSASEDGT-------------------LRQH 175 (751)
Q Consensus 135 ~~~~~~~------------~~--------~~h~~~V~~l~~sp~~~~~l~s~s~Dg~-------------------I~iw 175 (751)
....+.. +. .++......+++.|. ..+++.++.++. |..+
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPE-LDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCC-CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 0000000 00 011122234678874 456667776653 7778
Q ss_pred ecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCc---EEEEEeCCCeEEEEeCCCCCCcc
Q 004468 176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH---LLLVGGSDAFARLYDRRMLPPLT 252 (751)
Q Consensus 176 Dlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~---~l~sgs~D~~IriwD~~~~~~~~ 252 (751)
|.++++ ++|........ .+... ....+....+.. +++ .+++++.+|.++++|..+++.+.
T Consensus 276 D~~tG~--------------~~W~~~~~~~~-~wd~~-~~~~~~~~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~l~ 338 (668)
T 1kv9_A 276 RPDTGK--------------LAWHYQVTPGD-SWDFT-ATQQITLAELNI-DGKPRKVLMQAPKNGFFYVLDRTNGKLIS 338 (668)
T ss_dssp CTTTCC--------------EEEEEESSTTC-CSCCC-CCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred cCCCCc--------------eeeEeecCCCc-ccccc-CCCCcEEEEecc-CCcEEEEEEEECCCCEEEEEECCCCCEec
Confidence 877775 23332211000 00000 001122222222 233 78899999999999999998663
No 286
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.69 E-value=0.7 Score=52.58 Aligned_cols=207 Identities=10% Similarity=0.032 Sum_probs=129.9
Q ss_pred CcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004468 51 GCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (751)
Q Consensus 51 ~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~ 129 (751)
..+..|+|++.+. +..+-..++.|..+++........+ .........+++.+.. ++++++-...+.|.+.++....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~-~~g~~~P~GlAvD~~~-~~LY~tD~~~~~I~v~~~dG~~- 113 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV-EFGLDYPEGMAVDWLG-KNLYWADTGTNRIEVSKLDGQH- 113 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSTT-
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE-eCCCCCcceEEEEeCC-CEEEEEECCCCEEEEEecCCCc-
Confidence 4578999998654 5556667888999998754333333 2223457788888764 5666676677889999987421
Q ss_pred CCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEE-eCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecc
Q 004468 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA-SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (751)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~-s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (751)
....+...-.....|++.|..+.++++- +..+.|...++..... .++..
T Consensus 114 ---------~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~------------~~l~~--------- 163 (628)
T 4a0p_A 114 ---------RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER------------TTLVP--------- 163 (628)
T ss_dssp ---------CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------------EEEEC---------
T ss_pred ---------EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce------------EEEEC---------
Confidence 1111223345578999999777888775 3356777777754431 12211
Q ss_pred cCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEc
Q 004468 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (751)
Q Consensus 209 ~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fs 288 (751)
.......+++++.+++++++=...+.|..+|+..... .. + ...+ . ....+++.
T Consensus 164 -----~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v-------------~-~~~l------~-~P~glav~ 216 (628)
T 4a0p_A 164 -----NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EV-------------I-ADDL------P-HPFGLTQY 216 (628)
T ss_dssp -----SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE-------------E-EECC------S-CEEEEEEE
T ss_pred -----CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EE-------------e-eccC------C-CceEEEEE
Confidence 2245788999996566666666778999999864321 00 0 0000 1 25577776
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCcceeee
Q 004468 289 PNGEEVLLSYSGEHVYLMDVNHAGGRAMRY 318 (751)
Q Consensus 289 pdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~ 318 (751)
. +..+++-...+.|...|..+++......
T Consensus 217 ~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~ 245 (628)
T 4a0p_A 217 Q-DYIYWTDWSRRSIERANKTSGQNRTIIQ 245 (628)
T ss_dssp T-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred C-CEEEEecCCCCEEEEEECCCCCceEEEe
Confidence 5 4555556668999999988766444443
No 287
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.48 E-value=0.18 Score=59.01 Aligned_cols=115 Identities=14% Similarity=0.095 Sum_probs=67.9
Q ss_pred EEEEECCCCCEEEEEeCC-----CcEEEEeCCCCeE--EEEecccCCcceEEEEEecCCCCcEEEEEEC---CCcEEEEE
Q 004468 54 NAISWNSKGSLLISGSDD-----THINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFN 123 (751)
Q Consensus 54 ~~l~~s~dg~~LaSgs~D-----g~I~IWd~~~~~~--~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~---Dg~V~vwd 123 (751)
..+.|+|||+.|+....| ..|.++++.++.. ...+...+......+.|+|+ |++|+..+. ...|.++|
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpD--g~~l~~~~~~~~~~~l~~~d 301 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAAD--TNTLCIGSQSPETAEVHLLD 301 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTT--SSEEEEEEECSSCEEEEEEE
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCC--CCEEEEEecCCCCceEEEEE
Confidence 368899999988877765 3588888876532 22221123345678899999 787775542 34678888
Q ss_pred CCCCCCCCCCCCCCCC--ceeecccCCceeEEEEecCCCCEEEEEeCC--C--cEEEEecCC
Q 004468 124 LSRFSGRGLDDNAITP--SALYQCHTRRVKKLAVEVGNPHVVWSASED--G--TLRQHDFRQ 179 (751)
Q Consensus 124 ~~~~~~~~~~~~~~~~--~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D--g--~I~iwDlr~ 179 (751)
+..+.+ .. ............++.|+. ++.+++....+ + .|..+|+.+
T Consensus 302 ~~~~~~--------~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 302 LRKGNA--------HNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp SSSCTT--------CCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred CCCCCC--------CceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 875321 11 122233445556666654 55566565554 3 455556543
No 288
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.46 E-value=0.089 Score=51.88 Aligned_cols=143 Identities=11% Similarity=0.098 Sum_probs=85.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCce
Q 004468 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 141 (751)
Q Consensus 62 g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~ 141 (751)
+++.+..-.++.+.+||..+.+.+.++..+..+ ..+ .++ +..|+.+..++.|.++|..+. +.+.
T Consensus 75 ~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G--wgl--t~d--g~~L~vSdgs~~l~~iDp~t~----------~~~~ 138 (243)
T 3mbr_X 75 DRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG--WAL--TSD--DSHLYMSDGTAVIRKLDPDTL----------QQVG 138 (243)
T ss_dssp TEEEEEESSSSEEEEEETTTTEEEEEEECSSCC--CEE--EEC--SSCEEEECSSSEEEEECTTTC----------CEEE
T ss_pred CEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc--eEE--eeC--CCEEEEECCCCeEEEEeCCCC----------eEEE
Confidence 445555567899999999999999998443222 333 355 445555556889999999874 2233
Q ss_pred eecc--cC---CceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCcc
Q 004468 142 LYQC--HT---RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL 216 (751)
Q Consensus 142 ~~~~--h~---~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 216 (751)
.+.- +. ..++.+.|. ++.+++..-.+..|.+.|.++++.. -.+++..-.............
T Consensus 139 ~I~V~~~g~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V~------------~~idl~~l~~~~~~~~~~~~~ 204 (243)
T 3mbr_X 139 SIKVTAGGRPLDNLNELEWV--NGELLANVWLTSRIARIDPASGKVV------------AWIDLQALVPDADALTDSTND 204 (243)
T ss_dssp EEECEETTEECCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCBEE------------EEEECGGGSTTTTSCCCTTSS
T ss_pred EEEEccCCcccccceeeEEe--CCEEEEEECCCCeEEEEECCCCCEE------------EEEECCcCccccccccCCcCC
Confidence 3322 22 244566765 5677766657889999999998732 122221100000000011234
Q ss_pred ceEEEEEeCCCCcEEEEE
Q 004468 217 SLKSCDISSTRPHLLLVG 234 (751)
Q Consensus 217 ~v~~i~~sp~~~~~l~sg 234 (751)
-.+.|+++|...+++++|
T Consensus 205 vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 205 VLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp CEEEEEEETTTTEEEEEE
T ss_pred ceEEEEEcCCCCEEEEEC
Confidence 678999999765666665
No 289
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.43 E-value=0.29 Score=55.68 Aligned_cols=207 Identities=9% Similarity=0.038 Sum_probs=122.8
Q ss_pred CCcEEEEEECCCCCEEE-EEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCC
Q 004468 50 QGCVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (751)
Q Consensus 50 ~~~V~~l~~s~dg~~La-Sgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~ 128 (751)
-+.+..|+|++.+..|. +=...+.|..+++........+....-.....+++.+.. ++++++-...+.|.+.++....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~-~~ly~~d~~~~~I~v~~~dG~~ 117 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG-EKLYWTDSETNRIEVSNLDGSL 117 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC-CEEEEEeCCCCEEEEEECCCCC
Confidence 34577999998655554 444567888888875432222213333568899999863 5666676778899999987421
Q ss_pred CCCCCCCCCCCceee-cccCCceeEEEEecCCCCEEEEEe-CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCcee
Q 004468 129 GRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (751)
Q Consensus 129 ~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~l~s~s-~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (751)
..++ ...-.....|++.|.++.++++-- ..+.|...++..... ..+..
T Consensus 118 -----------~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~------------~~l~~------- 167 (619)
T 3s94_A 118 -----------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR------------FIIIN------- 167 (619)
T ss_dssp -----------CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC------------EEEEC-------
T ss_pred -----------EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce------------EEEEe-------
Confidence 2222 234455788999997777887753 345666666653321 11111
Q ss_pred cccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEE
Q 004468 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (751)
Q Consensus 207 ~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~ 286 (751)
......+.+++++.+++++++=...+.|..+|+...... .+.... .. ....|+
T Consensus 168 ------~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~--------------~~~~~~---~~----~P~gi~ 220 (619)
T 3s94_A 168 ------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ--------------AVVKGS---LP----HPFALT 220 (619)
T ss_dssp ------SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------------------------------CCCEE
T ss_pred ------CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccE--------------EEEeCC---CC----CceEEE
Confidence 012456889999976666666666778888887532111 000000 01 134567
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCcce
Q 004468 287 FSPNGEEVLLSYSGEHVYLMDVNHAGGRA 315 (751)
Q Consensus 287 fspdg~~Ll~~s~d~~I~lwdl~~~~~~~ 315 (751)
+..+ ..+++-...+.|...|..+++...
T Consensus 221 ~~~~-~ly~td~~~~~V~~~d~~tg~~~~ 248 (619)
T 3s94_A 221 LFED-ILYWTDWSTHSILACNKYTGEGLR 248 (619)
T ss_dssp ESSS-EEEEECTTTCSEEEEESSSCCCCE
T ss_pred EeCC-EEEEecCCCCEEEEEECCCCcccE
Confidence 7665 444455568899999998865443
No 290
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.41 E-value=0.74 Score=52.38 Aligned_cols=186 Identities=7% Similarity=0.006 Sum_probs=117.7
Q ss_pred CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCc
Q 004468 70 DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 149 (751)
Q Consensus 70 ~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 149 (751)
....|+..++.+......+....-..+..|+|.+.. +.++++-..++.|..+++.... ....+......
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~-~~lywtD~~~~~I~r~~~~g~~----------~~~v~~~g~~~ 81 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTD-NRIYWTDISLKTISRAFMNGSA----------LEHVVEFGLDY 81 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCS----------CEEEECSSCSC
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCC-CEEEEEECCCCeEEEEECCCCC----------cEEEEeCCCCC
Confidence 345788889876544333322334678999999974 5566666678899999887421 12222222345
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCc
Q 004468 150 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH 229 (751)
Q Consensus 150 V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~ 229 (751)
...|++.+.+++++++-...+.|.+.++..... .++.. ........|++.|.++.
T Consensus 82 P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~------------~~l~~-------------~~l~~P~~iavdp~~G~ 136 (628)
T 4a0p_A 82 PEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR------------QVLVW-------------KDLDSPRALALDPAEGF 136 (628)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSTTC------------EEEEC-------------SSCCCEEEEEEETTTTE
T ss_pred cceEEEEeCCCEEEEEECCCCEEEEEecCCCcE------------EEEEe-------------CCCCCcccEEEccCCCe
Confidence 778999876778888888889999999865431 12221 01234678999996565
Q ss_pred EEEEE-eCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEe-CCCcEEEEE
Q 004468 230 LLLVG-GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMD 307 (751)
Q Consensus 230 ~l~sg-s~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s-~d~~I~lwd 307 (751)
++.+- +..+.|...++...... .+.. .....+.|+++++++.|+.+- ..+.|..+|
T Consensus 137 lY~tD~g~~~~I~r~~~dG~~~~--------------~l~~--------~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d 194 (628)
T 4a0p_A 137 MYWTEWGGKPKIDRAAMDGSERT--------------TLVP--------NVGRANGLTIDYAKRRLYWTDLDTNLIESSN 194 (628)
T ss_dssp EEEEECSSSCEEEEEETTSCSCE--------------EEEC--------SCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCCCEEEEEeCCCCceE--------------EEEC--------CCCCcceEEEccccCEEEEEECCCCEEEEEc
Confidence 55554 22567777776532210 0000 011478999999877766654 578999999
Q ss_pred CCCCCc
Q 004468 308 VNHAGG 313 (751)
Q Consensus 308 l~~~~~ 313 (751)
+.....
T Consensus 195 ~dG~~~ 200 (628)
T 4a0p_A 195 MLGLNR 200 (628)
T ss_dssp TTSCSC
T ss_pred CCCCce
Confidence 987443
No 291
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.37 E-value=1.1 Score=52.58 Aligned_cols=207 Identities=10% Similarity=0.062 Sum_probs=125.1
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc------cCCcceEEEEEecCCCCcEEEEEECCCcEEEEE
Q 004468 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET------GHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (751)
Q Consensus 50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~------~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd 123 (751)
...|.++...++|.+.+.. .+ -|.+||..++........ -....|.++...++ |. |-.|..++-|..|+
T Consensus 262 ~~~i~~i~~d~~g~lWigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~--g~-lWigt~~~Gl~~~~ 336 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWIGT-FN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQ--GG-MWLGTYFGGLNYYH 336 (795)
T ss_dssp CSBEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTT--SC-EEEEESSSCEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEe-CC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCC--cC-EEEEECCCCeEEeC
Confidence 3569999999999866544 44 589999887764432211 12357999988877 55 44566667788888
Q ss_pred CCCCCCCCCCCCCCCCceeec-------ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004468 124 LSRFSGRGLDDNAITPSALYQ-------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (751)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~-------~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~ 196 (751)
..... ...+. -....|.++...+ ++ .||.|+.++-|..||..++...
T Consensus 337 ~~~~~-----------~~~~~~~~~~~~l~~~~V~~i~~d~-~g-~lWiGt~~~Gl~~~~~~~~~~~------------- 390 (795)
T 4a2l_A 337 PIRNR-----------FKNIRNIPYKNSLSDNVVSCIVEDK-DK-NLWIGTNDGGLNLYNPITQRFT------------- 390 (795)
T ss_dssp GGGGS-----------SEEECCCTTSSSCSCSSEEEEEECT-TS-CEEEEESSSCEEEECTTTCCEE-------------
T ss_pred CCccc-----------ceEEcCCCCCCCCCCCeeEEEEECC-CC-CEEEEECCCCeEEEcCCCCcEE-------------
Confidence 76421 11111 1245688888766 33 4778998888999998765311
Q ss_pred EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004468 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (751)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (751)
.+........ .......|.++...++ +++|.+|+.++-|.+||..+.+... +.... ..
T Consensus 391 ~~~~~~~~~~----~~l~~~~v~~i~~d~~-g~~lWigt~~~Gl~~~d~~~~~~~~--------------~~~~~---~~ 448 (795)
T 4a2l_A 391 SYTLQEDESA----RGIGSNNIKAVYVDEK-KSLVYIGTHAGGLSILHRNSGQVEN--------------FNQRN---SQ 448 (795)
T ss_dssp EECCC----------CCSCSCEEEEEEETT-TTEEEEEETTTEEEEEETTTCCEEE--------------ECTTT---SC
T ss_pred EEecCCCCcc----cCCCCccEEEEEEcCC-CCEEEEEeCcCceeEEeCCCCcEEE--------------eecCC---CC
Confidence 0000000000 0001346888888874 5657778887889999987654211 10000 00
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (751)
Q Consensus 277 ~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~ 311 (751)
.....|.++...++|+..+. +. +.|++||..++
T Consensus 449 l~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~ 481 (795)
T 4a2l_A 449 LVNENVYAILPDGEGNLWLG-TL-SALVRFNPEQR 481 (795)
T ss_dssp CSCSCEEEEEECSSSCEEEE-ES-SCEEEEETTTT
T ss_pred cCCCeeEEEEECCCCCEEEE-ec-CceeEEeCCCC
Confidence 11124899999998885544 44 56999998774
No 292
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.36 E-value=0.019 Score=60.09 Aligned_cols=115 Identities=19% Similarity=0.103 Sum_probs=92.0
Q ss_pred cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCC---------CchhhhhHhHHHHHhhcccccchhhhHHHhh
Q 004468 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIG---------PMLRHECLCIRAALLLKRKWKNDAQMAIRDC 430 (751)
Q Consensus 360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~---------~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~ 430 (751)
+.....+...+...+..++ |..|+..|..++...+.... ......+|.++|.++++.+ +...|+..+
T Consensus 144 p~~a~~~~~~g~~~~~~g~-~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g---~~~~A~~~~ 219 (336)
T 1p5q_A 144 LEQSTIVKERGTVYFKEGK-YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ---AFSAAIESC 219 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHH
Confidence 3445556667777777788 99999999999987765421 0111357788888888754 456789999
Q ss_pred HHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhh
Q 004468 431 YNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (751)
Q Consensus 431 ~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~ 478 (751)
.+++.++|.+.+++++++.++..++++.+|..+++......|......
T Consensus 220 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 267 (336)
T 1p5q_A 220 NKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 267 (336)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
Confidence 999999999999999999999999999999999999999999876443
No 293
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.35 E-value=0.006 Score=64.13 Aligned_cols=114 Identities=18% Similarity=0.106 Sum_probs=84.0
Q ss_pred cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCC-----------CchhhhhHhHHHHHhhcccccchhhhHHH
Q 004468 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIG-----------PMLRHECLCIRAALLLKRKWKNDAQMAIR 428 (751)
Q Consensus 360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~-----------~~~~~~~~~~ra~~~~~r~w~~d~y~al~ 428 (751)
+.....+...++..+..+. |..|+..|..++...+.... ..+...+|.++|.++++.+- ...|+.
T Consensus 176 ~~~a~~~~~~g~~~~~~g~-~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~---~~~A~~ 251 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEK-LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR---YDEAIG 251 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSC-CHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTC---CHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCC---HHHHHH
Confidence 3445666677777777777 88999999999876543210 00111377889998887653 457899
Q ss_pred hhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468 429 DCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (751)
Q Consensus 429 d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~ 477 (751)
.|.+++.++|.+.+++++++.++..++++.+|..++.......|.....
T Consensus 252 ~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a 300 (338)
T 2if4_A 252 HCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAI 300 (338)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHH
Confidence 9999999999999999999999999999999999999999888875543
No 294
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.28 E-value=0.21 Score=56.37 Aligned_cols=53 Identities=8% Similarity=-0.053 Sum_probs=37.0
Q ss_pred CcEEEEeCCCCeEEEEeccc-CC--------cceEEEEEe-cCCCC---cEEEEEECCCcEEEEECCCC
Q 004468 72 THINVWSYSSRKLLHSIETG-HS--------ANVFCTKFV-PETSD---ELVVSGAGDAEVRLFNLSRF 127 (751)
Q Consensus 72 g~I~IWd~~~~~~~~~l~~~-h~--------~~V~~v~fs-p~s~~---~~l~sgs~Dg~V~vwd~~~~ 127 (751)
+.|.-+|..+|+.+..+... |. .++. +... .+ | ..|+.++.+|.++++|..++
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~--G~~~~~v~~~~~~G~l~~lD~~tG 356 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKD--GKIVKATAHADRNGFFYVVDRSNG 356 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSS--SCEEEEEEEECTTSEEEEEETTTC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCC--CCEEEEEEEECCCceEEEEECCCC
Confidence 58999999999999887443 32 1121 1221 23 5 37888999999999998864
No 295
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.25 E-value=0.019 Score=50.07 Aligned_cols=98 Identities=15% Similarity=0.036 Sum_probs=76.1
Q ss_pred HHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHH
Q 004468 367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLY 446 (751)
Q Consensus 367 ~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~ 446 (751)
...+...+..|. +..|+..+..++...+.. ...+...+.++... |+.-.|+....+++.++|.+..+++.
T Consensus 21 ~~~g~~~~~~g~-~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~---g~~~~A~~~~~~al~l~P~~~~~~~~ 90 (121)
T 1hxi_A 21 MEEGLSMLKLAN-LAEAALAFEAVCQKEPER------EEAWRSLGLTQAEN---EKDGLAIIALNHARMLDPKDIAVHAA 90 (121)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 445666677777 889999999999877665 34556666666654 44567888899999999999999999
Q ss_pred HHHHHHHhcchHHHHHHHHHhcccCCCC
Q 004468 447 MSEALEQLCKYKEALDFAIAAQCLDPSN 474 (751)
Q Consensus 447 ~~~~l~~l~~~~~a~~~~~~~~~~~p~~ 474 (751)
++.++..+|++.+|..+++......|.+
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 9999999999999999999888877754
No 296
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.24 E-value=0.24 Score=55.86 Aligned_cols=25 Identities=12% Similarity=0.031 Sum_probs=20.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCcc
Q 004468 290 NGEEVLLSYSGEHVYLMDVNHAGGR 314 (751)
Q Consensus 290 dg~~Ll~~s~d~~I~lwdl~~~~~~ 314 (751)
.+..|++++.|+.|+.||..+++..
T Consensus 474 ~gg~v~~g~~dg~l~a~D~~tG~~l 498 (571)
T 2ad6_A 474 KGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCCEE
Confidence 4667888999999999999996533
No 297
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.06 E-value=0.05 Score=47.68 Aligned_cols=102 Identities=20% Similarity=0.209 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCc
Q 004468 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF 441 (751)
Q Consensus 362 ~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~ 441 (751)
....+...+...+..+. |..|+..|..++...+.. ...+.+++..++..+ +.-.|+..+..++.++|.+.
T Consensus 8 ~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~p~~~ 77 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRK-YPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQ---QPEQALADCRRALELDGQSV 77 (137)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHHhCc-HHHHHHHHHHHHhhCcCc------HHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCchhH
Confidence 34556667777778888 999999999999877554 346778888877654 34568888999999999999
Q ss_pred chHHHHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004468 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPS 473 (751)
Q Consensus 442 ~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~ 473 (751)
.+++.++.++..++++.+|..++.......|.
T Consensus 78 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 78 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 99999999999999999999999888776665
No 298
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.06 E-value=0.051 Score=48.06 Aligned_cols=112 Identities=22% Similarity=0.148 Sum_probs=89.1
Q ss_pred CcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCC
Q 004468 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (751)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~ 438 (751)
.+.....+...+...+..+. |..++..|..++...+.. ......+.+++..+...+ +.-.|+..+.+++.++|
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~~~~---~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~ 96 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGD-YGGALAAYTQALGLDATP---QDQAVLHRNRAACHLKLE---DYDKAETEASKAIEKDG 96 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHTSCCCH---HHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHcccc---hHHHHHHHHHHHHHHHHc---cHHHHHHHHHHHHhhCc
Confidence 34556667778888888888 999999999999865431 112356677787777654 35568888999999999
Q ss_pred CCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468 439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (751)
Q Consensus 439 ~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~ 477 (751)
.+..+++.++.++..++++.+|..++..+....|.....
T Consensus 97 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 135 (148)
T 2dba_A 97 GDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135 (148)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 999999999999999999999999999998888876543
No 299
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.05 E-value=0.093 Score=43.94 Aligned_cols=105 Identities=19% Similarity=0.142 Sum_probs=83.1
Q ss_pred hHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcc
Q 004468 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (751)
Q Consensus 363 ~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~ 442 (751)
...+...+......+. +..++..+..++...+.. ...+.+.+..+... ++.-.|+..+.+++.++|.+..
T Consensus 4 ~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~~~~~~ 73 (118)
T 1elw_A 4 VNELKEKGNKALSVGN-IDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKK---GDYQKAYEDGCKTVDLKPDWGK 73 (118)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHccc-HHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHhh---ccHHHHHHHHHHHHHhCcccHH
Confidence 3445556666777777 889999999999876543 34556667666654 3456788889999999999999
Q ss_pred hHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468 443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (751)
Q Consensus 443 a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~ 477 (751)
+++.++.++..++++.+|..++.......|.....
T Consensus 74 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 108 (118)
T 1elw_A 74 GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQL 108 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHH
Confidence 99999999999999999999999998888876543
No 300
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.04 E-value=0.021 Score=58.08 Aligned_cols=102 Identities=20% Similarity=0.211 Sum_probs=85.4
Q ss_pred hHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcc
Q 004468 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (751)
Q Consensus 363 ~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~ 442 (751)
...+...+...+..|. |..|+..|..++...+.. ...+.++|.++...+ +.-.|+.++.+++.++|.+.+
T Consensus 4 a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~ 73 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRK-YPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQ---QPEQALADCRRALELDGQSVK 73 (281)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHTTSCTTCHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCHH
Confidence 3455667777778888 999999999999977654 457889999988755 456789999999999999999
Q ss_pred hHHHHHHHHHHhcchHHHHHHHHHhcccCCCC
Q 004468 443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSN 474 (751)
Q Consensus 443 a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~ 474 (751)
+++.++.++..+|++.+|...+.......|..
T Consensus 74 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 74 AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999988877666643
No 301
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.04 E-value=0.51 Score=51.11 Aligned_cols=238 Identities=7% Similarity=0.009 Sum_probs=119.3
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCC---Cc-EEEEeCCCCeE-EEEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004468 45 ELEGHQGCVNAISWNSKGSLLISGSDD---TH-INVWSYSSRKL-LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (751)
Q Consensus 45 ~L~gH~~~V~~l~~s~dg~~LaSgs~D---g~-I~IWd~~~~~~-~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V 119 (751)
++-+.....+.|+|+++|+++++.... .. +...+...+.. ...+ ..-.....+++.|.. +.++++-..++.|
T Consensus 176 ~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~--~~~~~P~giavd~~~-G~lyv~d~~~~~V 252 (433)
T 4hw6_A 176 IKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSL--CNARGAKTCAVHPQN-GKIYYTRYHHAMI 252 (433)
T ss_dssp EECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEE--EECSSBCCCEECTTT-CCEEECBTTCSEE
T ss_pred EeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccc--cccCCCCEEEEeCCC-CeEEEEECCCCEE
Confidence 333344568999999999955555421 12 33333221111 0111 122345678889842 6777776677889
Q ss_pred EEEECCCCCCCCCCCCCCCCceee-c-ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004468 120 RLFNLSRFSGRGLDDNAITPSALY-Q-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (751)
Q Consensus 120 ~vwd~~~~~~~~~~~~~~~~~~~~-~-~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l 197 (751)
+.+|...+. ....+ . +....-..|+|+|++..++++-...+.|+.+|+...... ......+
T Consensus 253 ~~~d~~~g~----------~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~-------~~~~~~~ 315 (433)
T 4hw6_A 253 SSYDPATGT----------LTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGK-------LAVPYIV 315 (433)
T ss_dssp EEECTTTCC----------EEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCC-------BCCCEEE
T ss_pred EEEECCCCe----------EEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcc-------cCcEEEE
Confidence 999887431 10111 1 112223469999955447777777889999887632110 0000111
Q ss_pred Eec-c-cCceecccCCCCCccceEEEEE---------eCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccc
Q 004468 198 LDL-R-CGAKRSLADPPKQTLSLKSCDI---------SSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (751)
Q Consensus 198 ~~~-~-~~~~~~~~~~~~~~~~v~~i~~---------sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~ 266 (751)
... . .+..... ...........+++ .+ ++.++++-...+.|+.++. .+. +..+..... .+..-
T Consensus 316 ag~~g~~g~~dg~-~~~a~~~~P~giav~~n~~y~~dd~-~g~lyvaD~~n~~I~~~~~-~G~-v~t~~G~g~--~~~~G 389 (433)
T 4hw6_A 316 CGQHSSPGWVDGM-GTGARLWGPNQGIFVKNEAYAGEED-EYDFYFCDRDSHTVRVLTP-EGR-VTTYAGRGN--SREWG 389 (433)
T ss_dssp EECTTCCCCBCEE-GGGSBCSSEEEEEEEECGGGTTSSC-CEEEEEEETTTTEEEEECT-TSE-EEEEECCCT--TCSSC
T ss_pred EecCCCCccCCCc-ccceEEcCCccEEEEccccccccCC-CCcEEEEECCCCEEEEECC-CCC-EEEEEeCCC--CCccc
Confidence 111 0 0000000 00001224567888 44 4566666667788999985 232 111111100 00000
Q ss_pred ccccccccCCccccceEEEEEc-CCCCEEEEEeCCCcEEEEECC
Q 004468 267 FCPMHLSEHGRSSLHLTHVTFS-PNGEEVLLSYSGEHVYLMDVN 309 (751)
Q Consensus 267 ~~~~~~~~~g~~~~~vt~v~fs-pdg~~Ll~~s~d~~I~lwdl~ 309 (751)
+.......... -.....|+++ ++|..+++-..++.|+.++++
T Consensus 390 ~~dG~~~~~~~-~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 390 YVDGELRSQAL-FNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CBCEETTTTCB-CSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred cCCCccccccE-eCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 00000000000 1137889999 677776676778899988864
No 302
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=95.93 E-value=0.46 Score=48.95 Aligned_cols=168 Identities=10% Similarity=0.073 Sum_probs=104.7
Q ss_pred eccCCCcEEEEEECCCCCEEEEEe-CCCcEEEEeCCCCeEEEEeccc----C--CcceEEEEE---ecCCCCcEEEEEE-
Q 004468 46 LEGHQGCVNAISWNSKGSLLISGS-DDTHINVWSYSSRKLLHSIETG----H--SANVFCTKF---VPETSDELVVSGA- 114 (751)
Q Consensus 46 L~gH~~~V~~l~~s~dg~~LaSgs-~Dg~I~IWd~~~~~~~~~l~~~----h--~~~V~~v~f---sp~s~~~~l~sgs- 114 (751)
+.+..---.+++|.+....|..++ ..++|..|+...+........+ . ...+..|.| -|. +.++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~--grL~vv~~~ 85 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS--KRLFAVMKN 85 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC--CEEEEEEEE
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC--CcEEEEEcc
Confidence 334444455789987555555554 7999999999865433332122 1 124689999 477 67777543
Q ss_pred ------------CCCcEEEEECC---CCCCCCCCCCCCCCcee--eccc-----------CCceeEEEEecCCCCEEEEE
Q 004468 115 ------------GDAEVRLFNLS---RFSGRGLDDNAITPSAL--YQCH-----------TRRVKKLAVEVGNPHVVWSA 166 (751)
Q Consensus 115 ------------~Dg~V~vwd~~---~~~~~~~~~~~~~~~~~--~~~h-----------~~~V~~l~~sp~~~~~l~s~ 166 (751)
.+..|..+|+. ++. .+.. +... ......++..+ +++..+++
T Consensus 86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~----------~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~ 154 (334)
T 2p9w_A 86 AKSFNFADQSSHGASSFHSFNLPLSENSK----------PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAF 154 (334)
T ss_dssp TTTTCTTSCCSSSCCEEEEEESSCCTTCC----------CSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEE
T ss_pred cccccccccccCCCCEEEEEcCCcCCCCC----------EEEEecCccccccccccccccccCCceeEECC-CCCEEEeC
Confidence 26789999998 432 1221 1111 12478899998 67888888
Q ss_pred eCC-CcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeC
Q 004468 167 SED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 245 (751)
Q Consensus 167 s~D-g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~ 245 (751)
+.- +.|...+..... ...|.+... ........+.|+++|+ ++.|++....+.+.-+|+
T Consensus 155 s~~~~~I~rV~pdG~~-------------~~~~~~~~~-------~~~~~~G~nGIv~~pd-g~~Liv~~~~g~L~~fD~ 213 (334)
T 2p9w_A 155 ALGMPAIARVSADGKT-------------VSTFAWESG-------NGGQRPGYSGITFDPH-SNKLIAFGGPRALTAFDV 213 (334)
T ss_dssp EESSCEEEEECTTSCC-------------EEEEEECCC-------CSSSCCSCSEEEEETT-TTEEEEESSSSSEEEEEC
T ss_pred CCCCCeEEEEeCCCCE-------------EeeeeecCC-------CcccccCcceEEEeCC-CCEEEEEcCCCeEEEEcC
Confidence 887 887766654331 122221111 0112345789999995 677777766999999998
Q ss_pred CC
Q 004468 246 RM 247 (751)
Q Consensus 246 ~~ 247 (751)
+.
T Consensus 214 ~~ 215 (334)
T 2p9w_A 214 SK 215 (334)
T ss_dssp SS
T ss_pred CC
Confidence 73
No 303
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=95.93 E-value=0.12 Score=44.56 Aligned_cols=108 Identities=19% Similarity=0.237 Sum_probs=87.2
Q ss_pred cCcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCC
Q 004468 358 TGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRID 437 (751)
Q Consensus 358 ~~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~ 437 (751)
..+.....+...+......+. +..|+..+..++...+.. ...+.+.+..+... ++.-.|+..+.+++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~---~~~~~A~~~~~~a~~~~ 80 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGD-YPQAMKHYTEAIKRNPKD------AKLYSNRAACYTKL---LEFQLALKDCEECIQLE 80 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTC-SHHHHHHHHHHHTTCTTC------HHHHHHHHHHHTTT---TCHHHHHHHHHHHHHHC
T ss_pred cCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHh---ccHHHHHHHHHHHHHhC
Confidence 345566777778888888888 889999999999865443 34566777777654 34557888899999999
Q ss_pred CCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468 438 SSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 438 ~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~ 475 (751)
|.+..+++.++.++..++++.+|..++.......|...
T Consensus 81 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 118 (133)
T 2lni_A 81 PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118 (133)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGT
T ss_pred CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCch
Confidence 99999999999999999999999999998888877644
No 304
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.92 E-value=0.17 Score=57.12 Aligned_cols=69 Identities=13% Similarity=0.051 Sum_probs=44.7
Q ss_pred EEECCCCCEEEEEeCC----------------CcEEEEeCCCCeEEEEecccC-C--------cceEEEEEecCCCCc--
Q 004468 56 ISWNSKGSLLISGSDD----------------THINVWSYSSRKLLHSIETGH-S--------ANVFCTKFVPETSDE-- 108 (751)
Q Consensus 56 l~~s~dg~~LaSgs~D----------------g~I~IWd~~~~~~~~~l~~~h-~--------~~V~~v~fsp~s~~~-- 108 (751)
+++.++..++..+..+ +.|..+|..+|+.+..+...+ . .++. +...++ |+
T Consensus 240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~--G~~~ 316 (571)
T 2ad6_A 240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVN--GKMT 316 (571)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEET--TEEE
T ss_pred EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccC--CcEE
Confidence 4566665566555432 359999999999988774332 1 1221 222234 53
Q ss_pred -EEEEEECCCcEEEEECCCC
Q 004468 109 -LVVSGAGDAEVRLFNLSRF 127 (751)
Q Consensus 109 -~l~sgs~Dg~V~vwd~~~~ 127 (751)
.++.++.+|.+.++|..++
T Consensus 317 ~~v~~~~~~G~l~~lD~~tG 336 (571)
T 2ad6_A 317 PLLSHIDRNGILYTLNRENG 336 (571)
T ss_dssp EEEEEECTTSEEEEEETTTC
T ss_pred EEEEEeCCCcEEEEEECCCC
Confidence 5778889999999998865
No 305
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=95.85 E-value=0.62 Score=50.37 Aligned_cols=118 Identities=12% Similarity=0.128 Sum_probs=71.8
Q ss_pred CCCcEEEEEECCCCCEEEEEeC-CC----cEEEEeCCCCeEE--EEecccCCcceEEEEEecCCCCcEEEEEECCCcEEE
Q 004468 49 HQGCVNAISWNSKGSLLISGSD-DT----HINVWSYSSRKLL--HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (751)
Q Consensus 49 H~~~V~~l~~s~dg~~LaSgs~-Dg----~I~IWd~~~~~~~--~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~v 121 (751)
.......|+|+++|++|..+.. .+ .+.+.+. .+... ..+ . .......+++.|+. +.++++-...+.|..
T Consensus 177 ~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l-~-~~~~p~giavdp~~-g~lyv~d~~~~~V~~ 252 (430)
T 3tc9_A 177 GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITEL-T-KGQNCNGAETHPIN-GELYFNSWNAGQVFR 252 (430)
T ss_dssp CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEE-E-ECSSCCCEEECTTT-CCEEEEETTTTEEEE
T ss_pred CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeee-c-cCCCceEEEEeCCC-CEEEEEECCCCEEEE
Confidence 4456889999999995555543 22 2333333 22211 222 1 12345678899942 677777777889999
Q ss_pred EECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 004468 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (751)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~ 179 (751)
++...... ..+... ........|+|+|++..++++-...+.|..++...
T Consensus 253 ~~~~~~~~--------~~~~~~-~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 253 YDFTTQET--------TPLFTI-QDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EETTTTEE--------EEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EECCCCcE--------EEEEEc-CCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 99874310 011111 11235678999995433777777888999988764
No 306
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=95.81 E-value=0.14 Score=55.54 Aligned_cols=156 Identities=7% Similarity=0.020 Sum_probs=95.5
Q ss_pred cEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC-CC----cEEEEECC
Q 004468 52 CVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DA----EVRLFNLS 125 (751)
Q Consensus 52 ~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~-Dg----~V~vwd~~ 125 (751)
....|+|+| ++..|..+...+.|+.+|+..+...... ........|+|.++ +++|+.+.. .+ .+.+.+..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~--~~~~~P~~ia~d~~--G~~lyvad~~~~~~~~~v~~~~~~ 213 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY--SGLSKVRTICWTHE--ADSMIITNDQNNNDRPNNYILTRE 213 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE--CCCSCEEEEEECTT--SSEEEEEECCSCTTSEEEEEEEGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe--cCCCCcceEEEeCC--CCEEEEEeCCCCcccceEEEEeCC
Confidence 457899998 3444554444488999999876654433 34556889999999 674544443 22 23334432
Q ss_pred CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004468 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (751)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (751)
.. . .....+. .......++++|+++.++++-..++.|..+|...... ..+....
T Consensus 214 g~---~------~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~------------~~~~~~~---- 267 (430)
T 3tc9_A 214 SG---F------KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET------------TPLFTIQ---- 267 (430)
T ss_dssp GT---S------CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE------------EEEEECS----
T ss_pred Cc---e------eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE------------EEEEEcC----
Confidence 11 0 1112222 1334577889997778888877888999999875431 0111100
Q ss_pred ecccCCCCCccceEEEEEeCCCCc-EEEEEeCCCeEEEEeCC
Q 004468 206 RSLADPPKQTLSLKSCDISSTRPH-LLLVGGSDAFARLYDRR 246 (751)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~sp~~~~-~l~sgs~D~~IriwD~~ 246 (751)
.......++|+|+ ++ ++++-...+.|..++..
T Consensus 268 --------~~~~P~gia~~pd-G~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 268 --------DSGWEFHIQFHPS-GNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp --------SSSCCEEEEECTT-SSEEEEEETTTTEEEEEEEE
T ss_pred --------CCCcceeEEEcCC-CCEEEEEECCCCEEEEEeCC
Confidence 1134578999996 56 55666677899998765
No 307
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.76 E-value=1.1 Score=46.18 Aligned_cols=199 Identities=11% Similarity=0.054 Sum_probs=103.3
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEE-EEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCC
Q 004468 49 HQGCVNAISWNSKGSLLISGSDDTHIN-VWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (751)
Q Consensus 49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~-IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~ 127 (751)
+.+.+..|.+.+++..++.+. ++.|. -+| .++.-..+..++...+..+.+.|+ +.+++.+...+..+-+|-.
T Consensus 120 ~~~~~~~i~~~~~~~~~~~~~-~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~--~~~~~~g~~G~~~~S~d~g-- 192 (327)
T 2xbg_A 120 LPGSPRLIKALGNGSAEMITN-VGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPS--GEYVAVSSRGSFYSTWEPG-- 192 (327)
T ss_dssp CSSCEEEEEEEETTEEEEEET-TCCEEEESS--TTSSEEEEECSCCCCEEEEEECTT--SCEEEEETTSSEEEEECTT--
T ss_pred CCCCeEEEEEECCCCEEEEeC-CccEEEEcC--CCCCCEEeecCCCcceEEEEEcCC--CcEEEEECCCcEEEEeCCC--
Confidence 445678888887787777664 55443 223 233222222456678999999997 6777666443333334421
Q ss_pred CCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceec
Q 004468 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (751)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (751)
+.. ..++ -......+..+.+.+ ++.++ .++.+|.++..+...++. |..
T Consensus 193 -G~t-----W~~~--~~~~~~~~~~~~~~~-~g~~~-~~~~~G~~~~s~~D~G~t---------------W~~------- 240 (327)
T 2xbg_A 193 -QTA-----WEPH--NRTTSRRLHNMGFTP-DGRLW-MIVNGGKIAFSDPDNSEN---------------WGE------- 240 (327)
T ss_dssp -CSS-----CEEE--ECCSSSCEEEEEECT-TSCEE-EEETTTEEEEEETTEEEE---------------ECC-------
T ss_pred -CCc-----eeEC--CCCCCCccceeEECC-CCCEE-EEeCCceEEEecCCCCCe---------------eEe-------
Confidence 110 1111 123456788899888 44544 566778877764221210 100
Q ss_pred ccCC-CCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEE
Q 004468 208 LADP-PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (751)
Q Consensus 208 ~~~~-~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~ 286 (751)
+... ......+.++.+.+. +.+++++ .++.| ++....++.-... ... .... ..+..+.
T Consensus 241 ~~~~~~~~~~~~~~v~~~~~-~~~~~~g-~~g~i-~~S~DgG~tW~~~----------------~~~-~~~~-~~~~~v~ 299 (327)
T 2xbg_A 241 LLSPLRRNSVGFLDLAYRTP-NEVWLAG-GAGAL-LCSQDGGQTWQQD----------------VDV-KKVP-SNFYKIL 299 (327)
T ss_dssp CBCTTSSCCSCEEEEEESSS-SCEEEEE-STTCE-EEESSTTSSCEEC----------------GGG-TTSS-SCCCEEE
T ss_pred ccCCcccCCcceEEEEecCC-CEEEEEe-CCCeE-EEeCCCCcccEEc----------------Ccc-CCCC-CCeEEEE
Confidence 0000 001234778888873 5555554 46665 3333322211000 000 0000 1367788
Q ss_pred EcCCCCEEEEEeCCCcEEEEEC
Q 004468 287 FSPNGEEVLLSYSGEHVYLMDV 308 (751)
Q Consensus 287 fspdg~~Ll~~s~d~~I~lwdl 308 (751)
|.+++. +++.+.+|.|+-++-
T Consensus 300 ~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 300 FFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp EEETTE-EEEECSTTEEEEECC
T ss_pred EECCCc-eEEEcCCceEEEEcC
Confidence 875554 667778888877764
No 308
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=95.72 E-value=0.21 Score=51.54 Aligned_cols=178 Identities=7% Similarity=0.035 Sum_probs=103.7
Q ss_pred CcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecc----c--CCceeEEEE---ecCCCCEE
Q 004468 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC----H--TRRVKKLAV---EVGNPHVV 163 (751)
Q Consensus 93 ~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~----h--~~~V~~l~~---sp~~~~~l 163 (751)
...--+++|.+.. +.++++.-..++|..||...+.. ..+ .+.+ . ...+..|.| .| .+.++
T Consensus 12 ~~yPE~~~wd~~~-g~~~vs~l~~g~V~~~~~~~~~~--------~~~-~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~ 80 (334)
T 2p9w_A 12 NLTPEDTIYDRTR-QVFYQSNLYKGRIEVYNPKTQSH--------FNV-VIDGASSNGDGEQQMSGLSLLTHDN-SKRLF 80 (334)
T ss_dssp TCCCSCEEEETTT-TEEEEEETTTTEEEEECTTTCCE--------EEE-CCTTTCCSSCCSEEEEEEEESSSSS-CCEEE
T ss_pred ccCCcCccCcCCC-CEEEEEeccCCEEEEEcCCCCeE--------EEE-ecCCccccCCCcceeeEEEEeccCC-CCcEE
Confidence 3444578998873 45555555899999999874211 111 2221 1 113578999 57 46677
Q ss_pred EEEe-------------CCCcEEEEecC---CCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC
Q 004468 164 WSAS-------------EDGTLRQHDFR---QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR 227 (751)
Q Consensus 164 ~s~s-------------~Dg~I~iwDlr---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~ 227 (751)
++.. .+..|..||+. +++.. ...++..-.................+++.+ +
T Consensus 81 vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~------------~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~ 147 (334)
T 2p9w_A 81 AVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPV------------WSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-D 147 (334)
T ss_dssp EEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCS------------EEEESHHHHHHHHHHHSSCCEEEEEEEECT-T
T ss_pred EEEcccccccccccccCCCCEEEEEcCCcCCCCCEE------------EEecCccccccccccccccccCCceeEECC-C
Confidence 6533 26778899988 55422 222221100000000000113578999999 4
Q ss_pred CcEEEEEeCC-CeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 004468 228 PHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLM 306 (751)
Q Consensus 228 ~~~l~sgs~D-~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lw 306 (751)
++..++++.- +.|..++..... +..+.... + ........+.|+++|+|+.|++....+.+..|
T Consensus 148 GnaYVt~s~~~~~I~rV~pdG~~-~~~~~~~~----------~-----~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~f 211 (334)
T 2p9w_A 148 GNSYVAFALGMPAIARVSADGKT-VSTFAWES----------G-----NGGQRPGYSGITFDPHSNKLIAFGGPRALTAF 211 (334)
T ss_dssp SCEEEEEEESSCEEEEECTTSCC-EEEEEECC----------C-----CSSSCCSCSEEEEETTTTEEEEESSSSSEEEE
T ss_pred CCEEEeCCCCCCeEEEEeCCCCE-EeeeeecC----------C-----CcccccCcceEEEeCCCCEEEEEcCCCeEEEE
Confidence 7888888888 887777765321 11110000 0 01111237889999999999999889999999
Q ss_pred ECCC
Q 004468 307 DVNH 310 (751)
Q Consensus 307 dl~~ 310 (751)
|+.+
T Consensus 212 D~~~ 215 (334)
T 2p9w_A 212 DVSK 215 (334)
T ss_dssp ECSS
T ss_pred cCCC
Confidence 9885
No 309
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=95.58 E-value=0.38 Score=54.27 Aligned_cols=25 Identities=12% Similarity=0.065 Sum_probs=20.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCcc
Q 004468 290 NGEEVLLSYSGEHVYLMDVNHAGGR 314 (751)
Q Consensus 290 dg~~Ll~~s~d~~I~lwdl~~~~~~ 314 (751)
.+..|++++.|+.++.||.++++..
T Consensus 496 agglvf~g~~dg~l~A~D~~tG~~l 520 (582)
T 1flg_A 496 AGNLVFTGTGDGYFKAFDAKSGKEL 520 (582)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCCEEEEECCCCcEEEEECCCCCEE
Confidence 4667888999999999999997533
No 310
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=95.48 E-value=1.1 Score=49.04 Aligned_cols=175 Identities=13% Similarity=0.122 Sum_probs=98.2
Q ss_pred cEEEEEECCC--CCEEEEEeCCCcEEEEeCCCCeEEEEeccc--CCcceEEEEE-------ecCCCCcEEEEEECCC---
Q 004468 52 CVNAISWNSK--GSLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCTKF-------VPETSDELVVSGAGDA--- 117 (751)
Q Consensus 52 ~V~~l~~s~d--g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~--h~~~V~~v~f-------sp~s~~~~l~sgs~Dg--- 117 (751)
....|+|+|. ++++++-...+.|++.|..++.....+..+ .......++| .++ +..|+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~--G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADE--AEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCT--TCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCC--CCEEEEEeCCCCCc
Confidence 3678999983 555555555577899998877665444221 2235899999 998 67555554443
Q ss_pred ----cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC-------CCCCCCCC
Q 004468 118 ----EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR-------QGSSCPPA 186 (751)
Q Consensus 118 ----~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr-------~~~~~~~~ 186 (751)
.|.+.+... .+....... ...+.. -.....++++|+++.++++-..++.|..+|+. ++..-.+.
T Consensus 218 ~~~~~V~~i~r~~-~G~~~~~~~---~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~ 292 (496)
T 3kya_A 218 DESPSVYIIKRNA-DGTFDDRSD---IQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI 292 (496)
T ss_dssp GGEEEEEEEECCT-TSCCSTTSC---EEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred ccCceEEEEecCC-CCceeeccc---ceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccc
Confidence 255665332 111100000 012211 12345788899788888888899999999997 44320000
Q ss_pred CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCc-EEEEEeCCCeEEEEeCC
Q 004468 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH-LLLVGGSDAFARLYDRR 246 (751)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~sgs~D~~IriwD~~ 246 (751)
..........++.. + .......|+|+|+ ++ ++++=.....|+.++..
T Consensus 293 ~~~~~g~~~~l~~~-----------~-~~~~p~~ia~~p~-G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 293 VKNNPNTFKQLFTI-----------A-DPSWEFQIFIHPT-GKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp GGGCTTTEEEEEEC-----------S-SSSCCEEEEECTT-SSEEEEEETTTTEEEEEEEE
T ss_pred ccccccccceeEec-----------C-CCCCceEEEEcCC-CCEEEEEeCCCCEEEEEecC
Confidence 00000000111111 0 1234578999996 56 45555667889886653
No 311
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.40 E-value=1.9 Score=45.10 Aligned_cols=107 Identities=8% Similarity=0.017 Sum_probs=61.7
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE--EEEec--ccCCcceEEEEEecC---CCCcEEEEEECC-----Cc
Q 004468 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIE--TGHSANVFCTKFVPE---TSDELVVSGAGD-----AE 118 (751)
Q Consensus 51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~--~~~l~--~~h~~~V~~v~fsp~---s~~~~l~sgs~D-----g~ 118 (751)
...+.|+|.|+|+++++ ..++.|.+++ ++.. +..+. .........|+|+|+ . +.++++-... +.
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~-g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQE-PYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTS-CEEEEEEEECTTSSEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCC-CEEEEEEecCCCCCccE
Confidence 45679999999996665 4569999998 3432 22221 122456899999997 3 4555554433 56
Q ss_pred EEEEECCCCCCCCCCCCCCCC-ceeec---ccCCceeEEEEecCCCCEEEEEe
Q 004468 119 VRLFNLSRFSGRGLDDNAITP-SALYQ---CHTRRVKKLAVEVGNPHVVWSAS 167 (751)
Q Consensus 119 V~vwd~~~~~~~~~~~~~~~~-~~~~~---~h~~~V~~l~~sp~~~~~l~s~s 167 (751)
|..++..... +. ..+. +..+. ........|+|.| ++.++++.+
T Consensus 107 v~r~~~~~~~---~~--~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G 153 (352)
T 2ism_A 107 VVRLRHLGER---GV--LDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTG 153 (352)
T ss_dssp EEEEEECSSC---EE--EEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECC
T ss_pred EEEEEeCCCC---cC--ceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEEC
Confidence 7777776310 00 0011 11122 1112346899999 557777654
No 312
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.36 E-value=0.063 Score=62.22 Aligned_cols=163 Identities=9% Similarity=0.033 Sum_probs=97.2
Q ss_pred EEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC-CcEEEEECCCCCCC
Q 004468 53 VNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-AEVRLFNLSRFSGR 130 (751)
Q Consensus 53 V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D-g~V~vwd~~~~~~~ 130 (751)
...|++.+ .++++++-...+.|.+.++...... .+..........|++.|.. +.++++-... +.|.+.++....
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~-~l~~~~~~~P~giavDp~~-g~ly~td~~~~~~I~~~~~dG~~-- 530 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-TLFREQGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVD-- 530 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEE-EECCCSSCCCCCEECCSSS-SCCEECCCSSSCCEEBCCSSSCC--
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceE-EEEeCCCCCcceEEEccCC-CcEEEcccCCCCeEEEEeCCCCC--
Confidence 45678875 4555666566788999998754333 3323333456788999873 4555554333 677777765321
Q ss_pred CCCCCCCCCceee-cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceeccc
Q 004468 131 GLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 209 (751)
Q Consensus 131 ~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 209 (751)
...+ ...-...+.|+|+|+++.++++-+..+.|..+|+..... .++...
T Consensus 531 ---------~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~------------~~~~~~--------- 580 (699)
T 1n7d_A 531 ---------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR------------KTILED--------- 580 (699)
T ss_dssp ---------CCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC------------EEECCC---------
T ss_pred ---------eeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce------------EEEEec---------
Confidence 1111 122344678999997888998888889999999864321 111110
Q ss_pred CCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccc
Q 004468 210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253 (751)
Q Consensus 210 ~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~ 253 (751)
.........|++.. ..++++....+.|..+|..+++.+..
T Consensus 581 --~~~~~~P~glavd~--~~lywtd~~~~~V~~~d~~~G~~~~~ 620 (699)
T 1n7d_A 581 --EKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGSDVNL 620 (699)
T ss_dssp --SSSCSSCCCCEEET--TEEEEECSTTTCEEEEETTTEEEEEC
T ss_pred --CCcCCCceEeEEEC--CEEEEEeCCCCeEEEEEccCCCceEE
Confidence 00111233445554 35666666778999999876654443
No 313
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.31 E-value=2 Score=50.17 Aligned_cols=202 Identities=12% Similarity=0.058 Sum_probs=116.7
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCC
Q 004468 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (751)
Q Consensus 50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~-~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~ 128 (751)
...|.++...++|.+.+ |+.++-|..+|..+++...... ......|.++...++ +.+.+ |.. +-|.++|..+..
T Consensus 406 ~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~--g~lwi-gt~-~Gl~~~~~~~~~ 480 (781)
T 3v9f_A 406 SNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKN--KKIWI-GTH-AGVFVIDLASKK 480 (781)
T ss_dssp CSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTT--SEEEE-EET-TEEEEEESSSSS
T ss_pred CcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCC--CCEEE-EEC-CceEEEeCCCCe
Confidence 46799999988888666 6666678999987765433221 113467888887766 55544 444 558888887532
Q ss_pred CCCCCCCCCCCceeec---ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004468 129 GRGLDDNAITPSALYQ---CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (751)
Q Consensus 129 ~~~~~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (751)
- ....... .....|.++...+ ++. |+.|+.++-|..||..+.+.. .+...
T Consensus 481 ~--------~~~~~~~~~~~~~~~i~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~~-------------~~~~~---- 533 (781)
T 3v9f_A 481 V--------IHHYDTSNSQLLENFVRSIAQDS-EGR-FWIGTFGGGVGIYTPDMQLVR-------------KFNQY---- 533 (781)
T ss_dssp C--------CEEECTTTSSCSCSCEEEEEECT-TCC-EEEEESSSCEEEECTTCCEEE-------------EECTT----
T ss_pred E--------EecccCcccccccceeEEEEEcC-CCC-EEEEEcCCCEEEEeCCCCeEE-------------EccCC----
Confidence 1 0011000 1146788888776 444 566776555777887654310 11000
Q ss_pred ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEE
Q 004468 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (751)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v 285 (751)
..-....|.++...++ +. |..|+.+|.|..||..+.+. ..+.. ..|-....|.++
T Consensus 534 -----~~l~~~~i~~i~~d~~-g~-lWi~T~~Glv~~~d~~~~~~--------------~~~~~----~~gl~~~~i~~i 588 (781)
T 3v9f_A 534 -----EGFCSNTINQIYRSSK-GQ-MWLATGEGLVCFPSARNFDY--------------QVFQR----KEGLPNTHIRAI 588 (781)
T ss_dssp -----TTCSCSCEEEEEECTT-SC-EEEEETTEEEEESCTTTCCC--------------EEECG----GGTCSCCCCCEE
T ss_pred -----CCCCCCeeEEEEECCC-CC-EEEEECCCceEEECCCCCcE--------------EEccc----cCCCCCceEEEE
Confidence 0012346788888774 44 44455566658888765431 11110 011122247889
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCC
Q 004468 286 TFSPNGEEVLLSYSGEHVYLMDVNH 310 (751)
Q Consensus 286 ~fspdg~~Ll~~s~d~~I~lwdl~~ 310 (751)
..+++|...+ ++.+ -|..||..+
T Consensus 589 ~~d~~g~lW~-~t~~-Gl~~~~~~~ 611 (781)
T 3v9f_A 589 SEDKNGNIWA-STNT-GISCYITSK 611 (781)
T ss_dssp EECSSSCEEE-ECSS-CEEEEETTT
T ss_pred EECCCCCEEE-EcCC-ceEEEECCC
Confidence 9999987544 4444 477888776
No 314
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.29 E-value=0.19 Score=43.25 Aligned_cols=103 Identities=15% Similarity=0.030 Sum_probs=79.0
Q ss_pred HHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCC---cchH
Q 004468 368 EIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS---FRAH 444 (751)
Q Consensus 368 ~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~---~~a~ 444 (751)
..+...+..|+ |..|+..+..++...+... .....+...+.++... |+.-.|+.....++.++|.+ ..++
T Consensus 7 ~~a~~~~~~~~-~~~A~~~~~~~~~~~p~~~---~~~~~~~~lg~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (129)
T 2xev_A 7 NVAFDALKNGK-YDDASQLFLSFLELYPNGV---YTPNALYWLGESYYAT---RNFQLAEAQFRDLVSRYPTHDKAAGGL 79 (129)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHHCSSST---THHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTSTTHHHHH
T ss_pred HHHHHHHHhCC-HHHHHHHHHHHHHHCCCCc---ccHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHCCCCcccHHHH
Confidence 44556666777 8899999999998776542 1113445555555543 34556788888899999999 7889
Q ss_pred HHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468 445 LYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (751)
Q Consensus 445 ~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~ 477 (751)
+.++.++..+|++.+|...++.+...+|.....
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 999999999999999999999999999976543
No 315
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.28 E-value=0.43 Score=54.02 Aligned_cols=69 Identities=7% Similarity=0.073 Sum_probs=47.2
Q ss_pred EEECCCCCEEEEEeCC----------------CcEEEEeCCCCeEEEEecccCCc---------ceEEEEEe-cCCCC--
Q 004468 56 ISWNSKGSLLISGSDD----------------THINVWSYSSRKLLHSIETGHSA---------NVFCTKFV-PETSD-- 107 (751)
Q Consensus 56 l~~s~dg~~LaSgs~D----------------g~I~IWd~~~~~~~~~l~~~h~~---------~V~~v~fs-p~s~~-- 107 (751)
+++.+...++..+..+ ..|.-+|..+|+.+..+...|.. ++. +... .+ |
T Consensus 246 ~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~--G~~ 322 (599)
T 1w6s_A 246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKD--GKA 322 (599)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTT--SCE
T ss_pred eeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccC--CcE
Confidence 4566666777776654 37999999999998887544321 121 2222 33 5
Q ss_pred -cEEEEEECCCcEEEEECCCC
Q 004468 108 -ELVVSGAGDAEVRLFNLSRF 127 (751)
Q Consensus 108 -~~l~sgs~Dg~V~vwd~~~~ 127 (751)
..++.++.+|.+.+.|..++
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG 343 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDG 343 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTC
T ss_pred EEEEEEECCCcEEEEEECCCC
Confidence 56778899999999999865
No 316
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.27 E-value=2.6 Score=47.78 Aligned_cols=202 Identities=7% Similarity=0.008 Sum_probs=119.4
Q ss_pred CcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004468 51 GCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (751)
Q Consensus 51 ~~V~~l~~s~d-g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~ 129 (751)
..+.+|+|.+. +.++.+-...+.|..+++........+ ...-.....+++.+.. ++++++-+..+.|.+.++....
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~-~~~~~~p~GlAvD~~~-~~lY~tD~~~~~I~v~~~~G~~- 425 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV-TAQIAHPDGIAVDWVA-RNLYWTDTGTDRIEVTRLNGTM- 425 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCS-
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEE-ECCCCCcCceEEeccc-CcEEEEeCCCCcEEEEeCCCCe-
Confidence 34678899884 445555556778888888653332223 3334567788998753 5667776778899999987421
Q ss_pred CCCCCCCCCCceee-cccCCceeEEEEecCCCCEEEEEeC-CCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceec
Q 004468 130 RGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (751)
Q Consensus 130 ~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~l~s~s~-Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (751)
...+ ...-.....|++.|..+.++++-.. .+.|...++.... ...+..
T Consensus 426 ----------~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~------------~~~l~~-------- 475 (619)
T 3s94_A 426 ----------RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSD------------RVVLVN-------- 475 (619)
T ss_dssp ----------CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS------------CEEEEC--------
T ss_pred ----------EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCc------------cEEEEe--------
Confidence 2222 2234567899999977788877533 3667666664322 111111
Q ss_pred ccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEE
Q 004468 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (751)
Q Consensus 208 ~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~f 287 (751)
......+.+++++.+++++++=+..+.|..+++..... .. +.... ..| ..++++
T Consensus 476 -----~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~-~~-------------~~~~~---l~~----P~glav 529 (619)
T 3s94_A 476 -----TSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGR-RV-------------LVEDK---IPH----IFGFTL 529 (619)
T ss_dssp -----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EE-------------EEECC---CCS----SCCEEE
T ss_pred -----CCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCce-EE-------------EeccC---CCC----cEEEEE
Confidence 12346778999986555555555667898888753221 11 00000 011 234555
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCC
Q 004468 288 SPNGEEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 288 spdg~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
..+ ...++-...+.|+..|..++.
T Consensus 530 ~~~-~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 530 LGD-YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp ETT-EEEEECTTSSCEEEEESSSCC
T ss_pred ECC-EEEEeecCCCeEEEEEcCCCc
Confidence 433 333344457788888888863
No 317
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=95.21 E-value=0.097 Score=60.77 Aligned_cols=87 Identities=16% Similarity=0.051 Sum_probs=43.8
Q ss_pred hhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHH
Q 004468 380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE 459 (751)
Q Consensus 380 ~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~ 459 (751)
+..|+..|.++|...++. ...|.+.+.++...+ +.-.|+....+|++++|.+..+++.++.++..+|++.+
T Consensus 59 ~~eA~~~~~~Al~l~P~~------~~a~~nLg~~l~~~g---~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~e 129 (723)
T 4gyw_A 59 LQEALMHYKEAIRISPTF------ADAYSNMGNTLKEMQ---DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPE 129 (723)
T ss_dssp HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 444444444444433322 223444444444332 23345555555555555555555555555556666666
Q ss_pred HHHHHHHhcccCCCCh
Q 004468 460 ALDFAIAAQCLDPSNS 475 (751)
Q Consensus 460 a~~~~~~~~~~~p~~~ 475 (751)
|+.++++.....|.+.
T Consensus 130 Ai~~~~~Al~l~P~~~ 145 (723)
T 4gyw_A 130 AIASYRTALKLKPDFP 145 (723)
T ss_dssp HHHHHHHHHHHCSCCH
T ss_pred HHHHHHHHHHhCCCCh
Confidence 6555555555555443
No 318
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.13 E-value=3.4 Score=42.29 Aligned_cols=232 Identities=10% Similarity=0.129 Sum_probs=127.2
Q ss_pred EECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCC
Q 004468 57 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNA 136 (751)
Q Consensus 57 ~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~ 136 (751)
-.+|..+.||-=. ..++.|+|+++...+..+. ....|.-=+|... +.|+-.. +..|+.|++...
T Consensus 73 IMnP~~~ViALra-g~~LQiFnletK~klks~~--~~e~VvfWkWis~---~~L~lVT-~taVyHWs~~~~--------- 136 (365)
T 2xzh_A 73 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISL---NTVALVT-DNAVYHWSMEGE--------- 136 (365)
T ss_dssp EECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE--CSSCEEEEEECSS---SEEEEEE-SSEEEEEESSTT---------
T ss_pred eeCCCccEEEEec-CCeEEEechHHhhhhccee--cCCccEEEEecCC---CeEEEEc-CCcEEEEcccCC---------
Confidence 3577888888765 5789999999998888772 3457888888866 4444433 578999999742
Q ss_pred CCCceeecccC----CceeEEEEecCCCCEEEEEe------CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCcee
Q 004468 137 ITPSALYQCHT----RRVKKLAVEVGNPHVVWSAS------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (751)
Q Consensus 137 ~~~~~~~~~h~----~~V~~l~~sp~~~~~l~s~s------~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (751)
..|.+.+..|. ..|..-..+++...++++|- -.|.+.+|..+.... ..++-..+...
T Consensus 137 s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-------------Q~ieGhaa~F~ 203 (365)
T 2xzh_A 137 SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-------------QPIEGHAASFA 203 (365)
T ss_dssp CCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-------------EEECCSEEEEE
T ss_pred CCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc-------------ceeeeeeeeeE
Confidence 25677776664 34555566664443444443 135667777665431 11111100000
Q ss_pred cccCC-CCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC-CccccCCCCCCCCccccccccccccCCccccceEE
Q 004468 207 SLADP-PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (751)
Q Consensus 207 ~~~~~-~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~ 284 (751)
.+... ..+...+.|++... ...+.++|-++.... ....++ .+.+..+.|. ....+. .-+
T Consensus 204 ~~~~~g~~~~~~lf~fa~r~---------~~g~kLhIiEi~~~~~~~~~f~-----kk~vdi~fpp----ea~~DF-PVa 264 (365)
T 2xzh_A 204 QFKMEGNAEESTLFCFAVRG---------QAGGKLHIIEVGTPPTGNQPFP-----KKAVDVFFPP----EAQNDF-PVA 264 (365)
T ss_dssp EECCTTCSSCEEEEEEEEEE---------TTEEEEEEEECSSCCTTCCCCC-----CEEEEECCCT----TCTTCC-EEE
T ss_pred EEecCCCCCCceEEEEEEec---------CCCcEEEEEEcCCCCCCCCCcc-----cccceeeCCc----cccCCc-eEE
Confidence 00000 01111222222221 112588898885431 111111 1112222222 112233 457
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCc
Q 004468 285 VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL 336 (751)
Q Consensus 285 v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 336 (751)
+..|+.-..+..-+.-|.|++||+.++...-...-..+.+-..+......|+
T Consensus 265 mqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi 316 (365)
T 2xzh_A 265 MQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGI 316 (365)
T ss_dssp EEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEE
T ss_pred EEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcE
Confidence 8889988899999999999999999976544443344444444444443333
No 319
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=94.89 E-value=0.12 Score=49.62 Aligned_cols=104 Identities=12% Similarity=0.011 Sum_probs=83.7
Q ss_pred HHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhH----------------HHHHhhcccccchhhhHH
Q 004468 364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCI----------------RAALLLKRKWKNDAQMAI 427 (751)
Q Consensus 364 ~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~----------------ra~~~~~r~w~~d~y~al 427 (751)
..+...+...+..|. +..|+..+.+++...+.. ...+.. ++.++... |+.-.|+
T Consensus 5 ~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~---g~~~~A~ 74 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQ-NGQAVSYFRQTIALNIDR------TEMYYWTNVDKNSEISSKLATELALAYKKN---RNYDKAY 74 (208)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCHHH------HHHHHHHHSCTTSHHHHHHHHHHHHHHHHT---TCHHHHH
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCC------hHHHHHhhhcchhhhhHHHHHHHHHHHHHC---CCHHHHH
Confidence 445667777888888 889999999998865443 223334 66666654 4456788
Q ss_pred HhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468 428 RDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (751)
Q Consensus 428 ~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~ 477 (751)
....+++.++|.+..+++.++.++..+|++.+|..+++.+....|.....
T Consensus 75 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a 124 (208)
T 3urz_A 75 LFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA 124 (208)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 89999999999999999999999999999999999999999999987643
No 320
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=94.83 E-value=0.35 Score=41.02 Aligned_cols=106 Identities=25% Similarity=0.222 Sum_probs=83.0
Q ss_pred chhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCC
Q 004468 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 440 (751)
Q Consensus 361 ~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~ 440 (751)
.....+...+......+. +..++..+..++...+.. ...+.+.+..+... ++.-.|+....+++.++|.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~~~~ 79 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVEN-FEAAVHFYGKAIELNPAN------AVYFCNRAAAYSKL---GNYAGAVQDCERAICIDPAY 79 (131)
T ss_dssp HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTC
T ss_pred hhhHHHHHHHHHHHHccC-HHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHh---hchHHHHHHHHHHHhcCccC
Confidence 344555666777777777 889999999999876543 23556666666554 34556888889999999999
Q ss_pred cchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 441 FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 441 ~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
..+++.++.++..++++.+|..++.......|....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 115 (131)
T 2vyi_A 80 SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNET 115 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchH
Confidence 999999999999999999999999998888886544
No 321
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=94.83 E-value=3.5 Score=40.84 Aligned_cols=167 Identities=10% Similarity=0.101 Sum_probs=99.3
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE---EEEec-----ccCCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004468 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL---LHSIE-----TGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (751)
Q Consensus 51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~---~~~l~-----~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw 122 (751)
...-.|++.+++.++++.-.++.+.++++..... +.... .......-.++|.|. ++.|+++.......||
T Consensus 70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~--~~~L~va~E~~p~~i~ 147 (255)
T 3qqz_A 70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQ--DHTFWFFKEKNPIEVY 147 (255)
T ss_dssp SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETT--TTEEEEEEESSSEEEE
T ss_pred CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCC--CCEEEEEECcCCceEE
Confidence 4677889999998777766778899998764332 22221 123456789999999 4555555544445555
Q ss_pred ECCCCCCCCCCCCCCCCceee-------cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccce
Q 004468 123 NLSRFSGRGLDDNAITPSALY-------QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (751)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~-------~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~ 195 (751)
.+...... ..+..+ ..+...+.++++.|..+++++.....+.|.++|....- .
T Consensus 148 ~~~g~~~~-------~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~-------------~ 207 (255)
T 3qqz_A 148 KVNGLLSS-------NELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEV-------------I 207 (255)
T ss_dssp EEESTTCS-------SCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCE-------------E
T ss_pred EEcccccC-------CceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCE-------------E
Confidence 55410000 011111 11234578999999888888888888999999976431 2
Q ss_pred EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeC
Q 004468 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 245 (751)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~ 245 (751)
..+.+..+... ........-.|+|.++ ++++++ +.-+.++.|..
T Consensus 208 ~~~~L~~g~~~----l~~~~~qpEGia~d~~-G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 208 GEMSLTKGSRG----LSHNIKQAEGVAMDAS-GNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEEECSTTGGG----CSSCCCSEEEEEECTT-CCEEEE-ETTTEEEEEEC
T ss_pred EEEEcCCccCC----cccccCCCCeeEECCC-CCEEEE-cCCceEEEEEe
Confidence 22333322100 0111234578999995 665555 66666666654
No 322
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=94.81 E-value=0.12 Score=46.64 Aligned_cols=100 Identities=10% Similarity=-0.017 Sum_probs=79.2
Q ss_pred HHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHH
Q 004468 367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLY 446 (751)
Q Consensus 367 ~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~ 446 (751)
...+.-.+..|+ |..|+..+..+|...+.. ...+.+.+..+...+ +.-.|+....+++.++|.++.+++.
T Consensus 35 ~~la~~y~~~~~-~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~ 104 (150)
T 4ga2_A 35 FYFAKLYYEAKE-YDLAKKYICTYINVQERD------PKAHRFLGLLYELEE---NTDKAVECYRRSVELNPTQKDLVLK 104 (150)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcC---chHHHHHHHHHHHHhCCCCHHHHHH
Confidence 345555666677 889999999999877665 446777787777654 4567888899999999999999999
Q ss_pred HHHHHHHhcchHHHHH-HHHHhcccCCCChh
Q 004468 447 MSEALEQLCKYKEALD-FAIAAQCLDPSNSV 476 (751)
Q Consensus 447 ~~~~l~~l~~~~~a~~-~~~~~~~~~p~~~~ 476 (751)
++.++..++++.+|.. +++......|....
T Consensus 105 la~~~~~~~~~~~aa~~~~~~al~l~P~~~~ 135 (150)
T 4ga2_A 105 IAELLCKNDVTDGRAKYWVERAAKLFPGSPA 135 (150)
T ss_dssp HHHHHHHHCSSSSHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHhCcCCHH
Confidence 9999999999988775 46788888887543
No 323
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=94.69 E-value=0.27 Score=52.28 Aligned_cols=107 Identities=10% Similarity=0.002 Sum_probs=76.0
Q ss_pred cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCC
Q 004468 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS 439 (751)
Q Consensus 360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~ 439 (751)
+.....+...+......|. +..|+..|..+|...+.. ...|.+|+.++...+- +.-.|+..+.+++.++|.
T Consensus 94 p~~~~a~~~lg~~~~~~g~-~~~Al~~~~~al~l~P~~------~~a~~~~g~~l~~~g~--d~~eAl~~~~~al~l~P~ 164 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDER-SERAFKLTRDAIELNAAN------YTVWHFRRVLLKSLQK--DLHEEMNYITAIIEEQPK 164 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHCTT
T ss_pred hhhHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHhCccC------HHHHHHHHHHHHHccc--CHHHHHHHHHHHHHHCCC
Confidence 3333434444444444555 778888888888877654 3466777777766532 245678888888888888
Q ss_pred CcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468 440 SFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 440 ~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~ 475 (751)
+..+++.+..++..++++.+|+.++.......|.+.
T Consensus 165 ~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~ 200 (382)
T 2h6f_A 165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY 200 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCH
Confidence 888888888888888888888888888877777654
No 324
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=94.67 E-value=0.13 Score=54.83 Aligned_cols=108 Identities=9% Similarity=-0.014 Sum_probs=85.9
Q ss_pred cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCC
Q 004468 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS 439 (751)
Q Consensus 360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~ 439 (751)
|.....+...+......|..+..|+..+..+|...+.. ...|.+|+.++... |+.-.|+..+.+++.++|.
T Consensus 128 P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~------~~a~~~~g~~~~~~---g~~~eAl~~~~kal~ldP~ 198 (382)
T 2h6f_A 128 AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN------YQVWHHRRVLVEWL---RDPSQELEFIADILNQDAK 198 (382)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHH---TCCTTHHHHHHHHHHHCTT
T ss_pred ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCcc
Confidence 33334444445555555544888999999999877665 45778888888765 3455789999999999999
Q ss_pred CcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 440 SFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 440 ~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
+..+++.++.++..+|++.+|+.+........|.+..
T Consensus 199 ~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~ 235 (382)
T 2h6f_A 199 NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS 235 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999999999997654
No 325
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=94.65 E-value=1.6 Score=49.32 Aligned_cols=106 Identities=12% Similarity=0.082 Sum_probs=63.0
Q ss_pred CCEEEEEeC-CCcEEEEeC-CCCeEEEEecccCCcc----------eEEEEEecCCCCcE----EEEEECCCcEEEEECC
Q 004468 62 GSLLISGSD-DTHINVWSY-SSRKLLHSIETGHSAN----------VFCTKFVPETSDEL----VVSGAGDAEVRLFNLS 125 (751)
Q Consensus 62 g~~LaSgs~-Dg~I~IWd~-~~~~~~~~l~~~h~~~----------V~~v~fsp~s~~~~----l~sgs~Dg~V~vwd~~ 125 (751)
+..|..++. ++.|.-+|. .+|+.+.++....... ...++..|. +.. |+.++.|+.|..+|..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~--~g~~~~rV~v~t~dg~l~AlDa~ 139 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPG--DGKTPALILKTQLDGNVAALNAE 139 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECC--CSSSCCEEEEECTTSEEEEEETT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEec--CCcceeEEEEEcCCCEEEEEECC
Confidence 456666666 889999999 8999988873322110 123455443 333 7788889999999998
Q ss_pred CCCCCCCCCCCCCCceeecccC----CceeE-EEEecCCCCEEEEEe-----CCCcEEEEecCCCC
Q 004468 126 RFSGRGLDDNAITPSALYQCHT----RRVKK-LAVEVGNPHVVWSAS-----EDGTLRQHDFRQGS 181 (751)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~----~~V~~-l~~sp~~~~~l~s~s-----~Dg~I~iwDlr~~~ 181 (751)
++. .+-...... ..+.+ -.+. ++.+++.++ .+|.|+.+|.++++
T Consensus 140 TG~----------~~W~~~~~~~~~~~~~~ssP~v~--~g~V~vg~~g~e~g~~g~v~A~D~~TG~ 193 (599)
T 1w6s_A 140 TGE----------TVWKVENSDIKVGSTLTIAPYVV--KDKVIIGSSGAELGVRGYLTAYDVKTGE 193 (599)
T ss_dssp TCC----------EEEEEECCCGGGTCBCCSCCEEE--TTEEEECCBCGGGTCCCEEEEEETTTCC
T ss_pred CCC----------EEEeecCCCCCccceeecCCEEE--CCEEEEEecccccCCCCeEEEEECCCCc
Confidence 652 222221111 01111 1111 344443332 38999999999986
No 326
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=94.64 E-value=0.49 Score=42.36 Aligned_cols=106 Identities=15% Similarity=0.094 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCc
Q 004468 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF 441 (751)
Q Consensus 362 ~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~ 441 (751)
....+...+...+..|. +..|+..+..++...+.. ...+.+.+..+...+ +.-.|+....+++.++|.+.
T Consensus 12 ~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~~~~------~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~~~~~~~ 81 (166)
T 1a17_A 12 RAEELKTQANDYFKAKD-YENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTE---CYGYALGDATRAIELDKKYI 81 (166)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcccH
Confidence 44556666777777777 889999999999876544 345667777776543 34568888999999999999
Q ss_pred chHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (751)
Q Consensus 442 ~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~ 477 (751)
.+++.++.++..++++.+|..++.......|.....
T Consensus 82 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 117 (166)
T 1a17_A 82 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA 117 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999999999998888876543
No 327
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=94.64 E-value=5.5 Score=46.38 Aligned_cols=201 Identities=10% Similarity=0.050 Sum_probs=117.9
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-------------ccCCcceEEEEEecCCCCcEEEEEECC
Q 004468 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-------------TGHSANVFCTKFVPETSDELVVSGAGD 116 (751)
Q Consensus 50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~-------------~~h~~~V~~v~fsp~s~~~~l~sgs~D 116 (751)
...|.+|...++|.+.+ |+..+-|.++|..++....... .-....|.++...++ |. |-.|..+
T Consensus 257 ~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~--g~-lWigt~~ 332 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSF--NN-IWIGTWG 332 (781)
T ss_dssp CCCEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSS--CC-EEEEEBS
T ss_pred CceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCC--CC-EEEEecC
Confidence 35689999888887555 5554568889987654322110 113456888887776 55 4455666
Q ss_pred CcEEEEECCCCCCCCCCCCCCCCceeec----------ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004468 117 AEVRLFNLSRFSGRGLDDNAITPSALYQ----------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (751)
Q Consensus 117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~----------~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~ 186 (751)
+-|..++..... ...+. -....|.++...+ ++ .|+.|+.++-|..||..++...
T Consensus 333 ~Gl~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g-~lWigt~~~Gl~~~~~~~~~~~--- 396 (781)
T 3v9f_A 333 GGINFISNAPPT-----------FHTWSYSPTQMNESSLSNKVVSSVCDDG-QG-KLWIGTDGGGINVFENGKRVAI--- 396 (781)
T ss_dssp SCEEEECSSCCS-----------CEEEC----CCCSSCCSSSCEEEEEECT-TS-CEEEEEBSSCEEEEETTEEEEE---
T ss_pred CeEEEeCCCCCc-----------ceeeccCccccccCCCCCcceEEEEEcC-CC-CEEEEeCCCcEEEEECCCCeEE---
Confidence 778888876421 11111 1235688888765 33 4678887778889987654211
Q ss_pred CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccc
Q 004468 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (751)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~ 266 (751)
..... .......|.++...++ + .|.+|..++-|..||..+.+.. .
T Consensus 397 ------------~~~~~-------~~~~~~~v~~i~~d~~-g-~lWigt~~~Gl~~~~~~~~~~~--------------~ 441 (781)
T 3v9f_A 397 ------------YNKEN-------RELLSNSVLCSLKDSE-G-NLWFGTYLGNISYYNTRLKKFQ--------------I 441 (781)
T ss_dssp ------------CC------------CCCSBEEEEEECTT-S-CEEEEETTEEEEEECSSSCEEE--------------E
T ss_pred ------------EccCC-------CCCCCcceEEEEECCC-C-CEEEEeccCCEEEEcCCCCcEE--------------E
Confidence 00000 0012346888888763 3 4555777777889988654311 1
Q ss_pred ccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (751)
Q Consensus 267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~ 312 (751)
+... +.....|.++...++|.. .+++. +.|++||..++.
T Consensus 442 ~~~~-----~~~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~ 480 (781)
T 3v9f_A 442 IELE-----KNELLDVRVFYEDKNKKI-WIGTH-AGVFVIDLASKK 480 (781)
T ss_dssp CCST-----TTCCCCEEEEEECTTSEE-EEEET-TEEEEEESSSSS
T ss_pred eccC-----CCCCCeEEEEEECCCCCE-EEEEC-CceEEEeCCCCe
Confidence 1000 011124899999988874 44555 679999988743
No 328
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=94.48 E-value=0.099 Score=47.81 Aligned_cols=98 Identities=17% Similarity=0.077 Sum_probs=75.5
Q ss_pred hhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhccccc-------chhhhHHHhhHHHhcCCCCCcchHHHHHHHHH
Q 004468 380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWK-------NDAQMAIRDCYNARRIDSSSFRAHLYMSEALE 452 (751)
Q Consensus 380 ~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~-------~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~ 452 (751)
|-.++..+..++...+.. ...+.+.+.+++..+-. ...-.|+..+.+|+.++|....|++.+..++.
T Consensus 18 feeA~~~~~~Ai~l~P~~------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 18 FEQIRQDAENTYKSNPLD------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 556788888888877665 34566666666654321 12347899999999999999999999999999
Q ss_pred Hhc-----------chHHHHHHHHHhcccCCCChhhhHHHHH
Q 004468 453 QLC-----------KYKEALDFAIAAQCLDPSNSVMAEKVEN 483 (751)
Q Consensus 453 ~l~-----------~~~~a~~~~~~~~~~~p~~~~~~~~~~~ 483 (751)
.++ ++.+|+.+.++....-|.+......+..
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 885 8999999999999999987765544443
No 329
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=94.46 E-value=0.2 Score=58.09 Aligned_cols=108 Identities=19% Similarity=0.106 Sum_probs=90.1
Q ss_pred CcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCC
Q 004468 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (751)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~ 438 (751)
.|.....+...+.-....|+ +..|+..|.++|...++. ...+.+.+.++...+ +.-.|+....+|++++|
T Consensus 5 ~P~~a~al~nLG~~~~~~G~-~~eAi~~~~kAl~l~P~~------~~a~~nLg~~l~~~g---~~~eA~~~~~~Al~l~P 74 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGN-IEEAVRLYRKALEVFPEF------AAAHSNLASVLQQQG---KLQEALMHYKEAIRISP 74 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCT
T ss_pred CCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCC
Confidence 45666777778888888888 889999999999877654 456788888887654 45678888999999999
Q ss_pred CCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 439 ~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
.+..+++.++.++..++++.+|+.++++.....|.+..
T Consensus 75 ~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~ 112 (723)
T 4gyw_A 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFAD 112 (723)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999999999998888887763
No 330
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=94.39 E-value=0.44 Score=50.65 Aligned_cols=123 Identities=14% Similarity=0.128 Sum_probs=79.2
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe------------EEEEeccc-----CCcceEEEEEecCC-CCcEEEEE
Q 004468 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRK------------LLHSIETG-----HSANVFCTKFVPET-SDELVVSG 113 (751)
Q Consensus 52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~------------~~~~l~~~-----h~~~V~~v~fsp~s-~~~~l~sg 113 (751)
.|..+..||+|++||..+. ..|.|-.+..+. ....+..+ ....|..+.|+|-+ .|..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 5778999999999999865 478887765221 11223212 35779999999974 24689999
Q ss_pred ECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe--CCCcEEEEe
Q 004468 114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHD 176 (751)
Q Consensus 114 s~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s--~Dg~I~iwD 176 (751)
-.|+.||+||+.........-........+......|.+++|.+ ++-.|+..+ +.|-|+-..
T Consensus 146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~-~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK-DGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT-TSSCEEEEECTTSCEEEEES
T ss_pred ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC-CCcEEEEEecCCCCCEEEEC
Confidence 99999999999963221110000000011122336788999988 666666655 778776554
No 331
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=94.35 E-value=0.26 Score=47.53 Aligned_cols=99 Identities=16% Similarity=0.109 Sum_probs=59.6
Q ss_pred HHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHH
Q 004468 367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLY 446 (751)
Q Consensus 367 ~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~ 446 (751)
...+...+..|. +..|+..|..++...+.. ...+.+++.++...+ +.-.|+....+++.++|.+..+++.
T Consensus 9 ~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g---~~~~A~~~~~~al~~~P~~~~a~~~ 78 (217)
T 2pl2_A 9 LRLGVQLYALGR-YDAALTLFERALKENPQD------PEALYWLARTQLKLG---LVNPALENGKTLVARTPRYLGGYMV 78 (217)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHTTSSSC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 334444555555 666777777777655443 234455555555432 2345666666666777777777777
Q ss_pred HHHHHHHh-----------cchHHHHHHHHHhcccCCCCh
Q 004468 447 MSEALEQL-----------CKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 447 ~~~~l~~l-----------~~~~~a~~~~~~~~~~~p~~~ 475 (751)
++.++..+ |++.+|+.++.......|...
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~ 118 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA 118 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccH
Confidence 77777776 777777766666666666544
No 332
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=94.31 E-value=5 Score=41.79 Aligned_cols=112 Identities=12% Similarity=0.020 Sum_probs=62.7
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-EEEEec--ccCCcceEEEEEecC---CCCcEEEEEEC---C----
Q 004468 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIE--TGHSANVFCTKFVPE---TSDELVVSGAG---D---- 116 (751)
Q Consensus 50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~-~~~~l~--~~h~~~V~~v~fsp~---s~~~~l~sgs~---D---- 116 (751)
-...+.|+|.|+|+++++ ..++.|.+++. +++ .+..+. .........|+|+|+ . +.++++-+. +
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~-g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKK-SWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTS-CEEEEEEEEECGGGCEE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcC-CEEEEEEeccCCCCCcc
Confidence 345789999999986665 45699999974 454 222221 122356899999996 3 455555442 3
Q ss_pred CcEEEEECCCCCCCCCCCCCCCCc-eeec-ccCCceeEEEEecCCCCEEEEEeC
Q 004468 117 AEVRLFNLSRFSGRGLDDNAITPS-ALYQ-CHTRRVKKLAVEVGNPHVVWSASE 168 (751)
Q Consensus 117 g~V~vwd~~~~~~~~~~~~~~~~~-~~~~-~h~~~V~~l~~sp~~~~~l~s~s~ 168 (751)
..|..|+......... ..+.+ ..+. ........|+|.| ++.++++.+.
T Consensus 105 ~~v~r~~~~~~~~~~~---~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~ 154 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLK---EVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGD 154 (354)
T ss_dssp EEEEEEEECSSSCCEE---EEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCC
T ss_pred eEEEEEEECCCCcCcC---ccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECC
Confidence 5677777653211000 00111 1121 1112346799999 5677776543
No 333
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=94.11 E-value=0.18 Score=55.39 Aligned_cols=97 Identities=15% Similarity=0.078 Sum_probs=80.2
Q ss_pred hcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHh
Q 004468 375 EEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQL 454 (751)
Q Consensus 375 ~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l 454 (751)
..|+ |..|+..|.+++...+.. ...+.++|.++...+ +.-.|+..+.+|++++|.+..+++.++.++..+
T Consensus 18 ~~g~-~~~A~~~~~~Al~~~p~~------~~~~~~lg~~~~~~g---~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 18 KAKD-YENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTE---CYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp TTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HhCC-HHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3444 889999999999877654 457788888888754 355789999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcccCCCChhhhHHH
Q 004468 455 CKYKEALDFAIAAQCLDPSNSVMAEKV 481 (751)
Q Consensus 455 ~~~~~a~~~~~~~~~~~p~~~~~~~~~ 481 (751)
+++.+|..++++.....|........+
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l 114 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKY 114 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999999988888776543333
No 334
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=94.00 E-value=0.52 Score=45.27 Aligned_cols=104 Identities=13% Similarity=-0.021 Sum_probs=85.2
Q ss_pred HHHHHHHHHhhhcCCChhHHHHHhHHHHhccc-CCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcc
Q 004468 364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHL-SGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (751)
Q Consensus 364 ~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~-~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~ 442 (751)
..+...+...+..|+ |..|+..+..++...+ .. ...+.+++..+...+ +.-.|+....+++.++|....
T Consensus 8 ~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~~~~~------~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~ 77 (228)
T 4i17_A 8 NQLKNEGNDALNAKN-YAVAFEKYSEYLKLTNNQD------SVTAYNCGVCADNIK---KYKEAADYFDIAIKKNYNLAN 77 (228)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTTCC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTTCSHHH
T ss_pred HHHHHHHHHHHHccC-HHHHHHHHHHHHhccCCCC------cHHHHHHHHHHHHhh---cHHHHHHHHHHHHHhCcchHH
Confidence 445667777778888 9999999999998765 22 245556777777644 456789999999999999999
Q ss_pred hHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468 443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (751)
Q Consensus 443 a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~ 477 (751)
+++.++.++..++++.+|..++.......|.....
T Consensus 78 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 112 (228)
T 4i17_A 78 AYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATI 112 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence 99999999999999999999999999999986643
No 335
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=93.98 E-value=3.7 Score=42.83 Aligned_cols=202 Identities=11% Similarity=0.117 Sum_probs=108.5
Q ss_pred EEEEEECCCCCEEEEEe------------CCCcEEEEeCCC--CeE-EEEeccc-----CCcceEEEEEecCCCCc--EE
Q 004468 53 VNAISWNSKGSLLISGS------------DDTHINVWSYSS--RKL-LHSIETG-----HSANVFCTKFVPETSDE--LV 110 (751)
Q Consensus 53 V~~l~~s~dg~~LaSgs------------~Dg~I~IWd~~~--~~~-~~~l~~~-----h~~~V~~v~fsp~s~~~--~l 110 (751)
.-.|...|+|..+++++ .+|.|.++|+.+ ++. ...+ .+ .......+.+.++.++. ++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~-~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEI-IGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEE-ECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEc-cCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34666788887666652 789999999873 222 1122 22 23467788887742233 44
Q ss_pred EEEEC--CCcEEEEECCCCCCCCCCCCCCCCceeeccc-CCceeEEEEecCCCCEEEEEeC---C--------------C
Q 004468 111 VSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQCH-TRRVKKLAVEVGNPHVVWSASE---D--------------G 170 (751)
Q Consensus 111 ~sgs~--Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~l~s~s~---D--------------g 170 (751)
++-.. +.+|.||++....... ..+..+.+. -...+.+.+.+ ++.++++... | |
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~------~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g 203 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSL------LHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWS 203 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEE------EEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCE
T ss_pred EEECCCCCCeEEEEEEECCCCEE------EEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCcc
Confidence 44333 5788898887532211 223333332 23578888888 5566655431 1 2
Q ss_pred cEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC
Q 004468 171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 250 (751)
Q Consensus 171 ~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~ 250 (751)
.|..+|. ++ + .++.+ .-...+.++|+|++..++++-+..+.|..|++.....
T Consensus 204 ~vyr~d~--~~-----------~-~~~~~--------------~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~ 255 (355)
T 3sre_A 204 FVTYYSP--ND-----------V-RVVAE--------------GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT 255 (355)
T ss_dssp EEEEECT--TC-----------C-EEEEE--------------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred EEEEEEC--Ce-----------E-EEeec--------------CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCc
Confidence 2222222 10 0 11110 1234688999996434555555678999999863211
Q ss_pred ccccCCCCCCCCccccccccccccCCccccceEEEEEcC-CCCEEEEEeCC-CcEEEEECC
Q 004468 251 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSG-EHVYLMDVN 309 (751)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fsp-dg~~Ll~~s~d-~~I~lwdl~ 309 (751)
+.. .+.+ .+ ....-.+++++ +|++.+++..+ +.|..|+..
T Consensus 256 l~~----------~~~~---~~------~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 256 LTP----------LRVL---SF------DTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEE----------EEEE---EC------SSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred Eec----------CEEE---eC------CCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 110 1111 01 11367899999 59877766533 455555443
No 336
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=93.96 E-value=7.7 Score=41.32 Aligned_cols=234 Identities=10% Similarity=0.124 Sum_probs=129.3
Q ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCC
Q 004468 56 ISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN 135 (751)
Q Consensus 56 l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~ 135 (751)
.-.+|..+.||-=. ..++.|+|+++...+..+ . ....|.-=+|... +.|+-. .+..|+.|++...
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~-~-~~e~VvfWkWis~---~~l~lV-T~taVyHWsi~~~-------- 135 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH-T-MTDDVTFWKWISL---NTVALV-TDNAVYHWSMEGE-------- 135 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEE-E-CSSCCCEEEEEET---TEEEEE-CSSEEEEEESSSS--------
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcce-e-cCCCceEEEecCC---CeEEEE-cCCeeEEecccCC--------
Confidence 34567777777665 579999999998888877 2 2446777788766 344443 3578999999742
Q ss_pred CCCCceeecccC----CceeEEEEecCCCCEEEEEe------CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004468 136 AITPSALYQCHT----RRVKKLAVEVGNPHVVWSAS------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (751)
Q Consensus 136 ~~~~~~~~~~h~----~~V~~l~~sp~~~~~l~s~s------~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (751)
..|.+.+..|. ..|..-..+++...++++|- -.|.+.+|..+.... ..++-..+..
T Consensus 136 -s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-------------Q~ieGhaa~F 201 (494)
T 1bpo_A 136 -SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-------------QPIEGHAASF 201 (494)
T ss_dssp -CCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-------------EEECCSEEEE
T ss_pred -CCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-------------chheeeeeee
Confidence 25677776664 34555566674433444442 236677787765531 1111110000
Q ss_pred ecccC-CCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC-CccccCCCCCCCCccccccccccccCCccccceE
Q 004468 206 RSLAD-PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (751)
Q Consensus 206 ~~~~~-~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt 283 (751)
..+.. ...+...+.|++.... ..+.++|.++.... ....++ .+.+..+.|. ....+. .-
T Consensus 202 ~~~~~~g~~~~~~lf~fa~r~~---------~g~kLhi~Ei~~~~~~~~~f~-----kk~vdv~fpp----e~~~DF-Pv 262 (494)
T 1bpo_A 202 AQFKMEGNAEESTLFCFAVRGQ---------AGGKLHIIEVGTPPTGNQPFP-----KKAVDVFFPP----EAQNDF-PV 262 (494)
T ss_dssp EEEECTTCSSEEEEEEEEECST---------TCCEEEEEECSCCCTTCCCCC-----CEEEECCCCT----TSTTCC-EE
T ss_pred EEEecCCCCCCceEEEEEEecC---------CCcEEEEEEcCCCccCCCCcc-----ceeeeeeCCc----ccccCc-ee
Confidence 00000 0011122333333221 13788999885431 111110 0112222222 112233 45
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcc
Q 004468 284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLE 337 (751)
Q Consensus 284 ~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~ 337 (751)
++..|+.-..+..-+.-|.|++||+.++...-...-..+.+-..+......|+.
T Consensus 263 amqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~ 316 (494)
T 1bpo_A 263 AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGII 316 (494)
T ss_dssp EEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEE
T ss_pred EEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEE
Confidence 788999989999999999999999999865444444444554444444444443
No 337
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=93.87 E-value=0.059 Score=45.05 Aligned_cols=83 Identities=13% Similarity=0.137 Sum_probs=39.5
Q ss_pred HHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCC------
Q 004468 367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS------ 440 (751)
Q Consensus 367 ~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~------ 440 (751)
...+...+..|+ |..|+..|..++...+.. ...+.+++.++...+ +.-.|+..+.+++.++|.+
T Consensus 8 ~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~ 77 (111)
T 2l6j_A 8 KEQGNSLFKQGL-YREAVHCYDQLITAQPQN------PVGYSNKAMALIKLG---EYTQAIQMCQQGLRYTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHTTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHTSCSSTTSHHHH
T ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCccHHHHH
Confidence 344444444555 556666666655544332 223344444444332 2233455555555555555
Q ss_pred cchHHHHHHHHHHhcchHH
Q 004468 441 FRAHLYMSEALEQLCKYKE 459 (751)
Q Consensus 441 ~~a~~~~~~~l~~l~~~~~ 459 (751)
.+++++++.++..++.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~ 96 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQI 96 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHhHhh
Confidence 4455555555555544333
No 338
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=93.87 E-value=0.44 Score=40.47 Aligned_cols=100 Identities=13% Similarity=0.130 Sum_probs=76.8
Q ss_pred HHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCC---
Q 004468 364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS--- 440 (751)
Q Consensus 364 ~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~--- 440 (751)
..+...+......+. +..|+..+..++...+.. ...+.+.+..+... ++.-.|+..+..++.+.|..
T Consensus 5 ~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~ 74 (131)
T 1elr_A 5 LKEKELGNDAYKKKD-FDTALKHYDKAKELDPTN------MTYITNQAAVYFEK---GDYNKCRELCEKAIEVGRENRED 74 (131)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHh---ccHHHHHHHHHHHHhhccccchh
Confidence 344555666666777 889999999999876543 34556667666653 34556788888888888876
Q ss_pred ----cchHHHHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004468 441 ----FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPS 473 (751)
Q Consensus 441 ----~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~ 473 (751)
..+++.++.++..++++.+|..++.......|.
T Consensus 75 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 889999999999999999999999998887773
No 339
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=93.78 E-value=2.2 Score=43.02 Aligned_cols=64 Identities=11% Similarity=0.173 Sum_probs=35.7
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC-----cEEEEECCCC
Q 004468 61 KGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA-----EVRLFNLSRF 127 (751)
Q Consensus 61 dg~~LaSgs~D-----g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg-----~V~vwd~~~~ 127 (751)
++.+++.|+.+ ..+.+||+.+.+....-.......-.++... + +.+++.|+.++ .+.+||+.+.
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~d~~~~ 134 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-N--GLLYAVGGFDGSTGLSSVEAYNIKSN 134 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-T--TEEEEEEEECSSCEEEEEEEEETTTT
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-C--CEEEEEcCCCCCccCceEEEEeCCCC
Confidence 67777887754 3588899887653322111111111222222 3 57777777653 4778888753
No 340
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=93.77 E-value=1.9 Score=45.13 Aligned_cols=29 Identities=14% Similarity=0.318 Sum_probs=24.8
Q ss_pred eEEEEEcCCCCEEEEEe-CCCcEEEEECCC
Q 004468 282 LTHVTFSPNGEEVLLSY-SGEHVYLMDVNH 310 (751)
Q Consensus 282 vt~v~fspdg~~Ll~~s-~d~~I~lwdl~~ 310 (751)
.+.++|||||+.|+++. ..+.|+.|++..
T Consensus 223 pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 223 ANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 68899999999887765 478999999975
No 341
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=93.75 E-value=0.26 Score=40.60 Aligned_cols=95 Identities=11% Similarity=-0.015 Sum_probs=74.0
Q ss_pred HHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCC--CcchHHH
Q 004468 369 IARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS--SFRAHLY 446 (751)
Q Consensus 369 ~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~--~~~a~~~ 446 (751)
.+......+. +..|+..+..++...+.. ...+.+.+.++...+ +.-.|+....+++.++|. ...+++.
T Consensus 12 ~~~~~~~~~~-~~~A~~~~~~a~~~~~~~------~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 12 EGVLQYDAGN-YTESIDLFEKAIQLDPEE------SKYWLMKGKALYNLE---RYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp HHHHHHSSCC-HHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred HHHHHHHhhh-HHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 3444555566 888999999998866543 335566777766543 345678888899999999 9999999
Q ss_pred HHHHHHHh-cchHHHHHHHHHhcccCCC
Q 004468 447 MSEALEQL-CKYKEALDFAIAAQCLDPS 473 (751)
Q Consensus 447 ~~~~l~~l-~~~~~a~~~~~~~~~~~p~ 473 (751)
++.++..+ +++.+|..++..+....|.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999999 9999999999988887774
No 342
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=93.62 E-value=6 Score=39.80 Aligned_cols=64 Identities=8% Similarity=0.176 Sum_probs=37.1
Q ss_pred CCCEEEEEeCC----CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC------CcEEEEECCCC
Q 004468 61 KGSLLISGSDD----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD------AEVRLFNLSRF 127 (751)
Q Consensus 61 dg~~LaSgs~D----g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D------g~V~vwd~~~~ 127 (751)
++.+++.|+.+ ..+.+||+.+.+....-.......-.++... + +.+++.|+.+ ..+.+||+.+.
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~d~~~~ 128 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-E--GKIYTSGGSEVGNSALYLFECYDTRTE 128 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-T--TEEEEECCBBTTBSCCCCEEEEETTTT
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-C--CEEEEECCCCCCCcEeeeEEEEeCCCC
Confidence 66788888755 5688899887654322111111111122222 3 5777887765 45888898764
No 343
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=93.55 E-value=3.2 Score=41.73 Aligned_cols=147 Identities=15% Similarity=0.179 Sum_probs=73.8
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCe-----EEEEecccCCcceEEEEEecCCCCcEEEEEECC-----CcEEEEECC
Q 004468 61 KGSLLISGSDD-----THINVWSYSSRK-----LLHSIETGHSANVFCTKFVPETSDELVVSGAGD-----AEVRLFNLS 125 (751)
Q Consensus 61 dg~~LaSgs~D-----g~I~IWd~~~~~-----~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D-----g~V~vwd~~ 125 (751)
++.+++.|+.+ ..+.+||+.+.+ .+..+. ..... .++... + +.+++.|+.+ ..+.+||+.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p-~~r~~-~~~~~~-~--~~lyv~GG~~~~~~~~~~~~~d~~ 136 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMN-VRRGL-AGATTL-G--DMIYVSGGFDGSRRHTSMERYDPN 136 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCS-SCCBS-CEEEEE-T--TEEEEECCBCSSCBCCEEEEEETT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCC-CCccc-eeEEEE-C--CEEEEEcccCCCcccceEEEEcCC
Confidence 56778888754 458899987654 332221 11111 122222 3 5777777654 357888887
Q ss_pred CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC-----cEEEEecCCCCCCCCCCCCCCccceEEEec
Q 004468 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-----TLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (751)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg-----~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (751)
+..- ..+..+...... .+++. . ++.+++.|+.++ .+.+||+.+.+
T Consensus 137 ~~~W--------~~~~~~p~~r~~-~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~------------------- 186 (301)
T 2vpj_A 137 IDQW--------SMLGDMQTAREG-AGLVV-A-SGVIYCLGGYDGLNILNSVEKYDPHTGH------------------- 186 (301)
T ss_dssp TTEE--------EEEEECSSCCBS-CEEEE-E-TTEEEEECCBCSSCBCCCEEEEETTTTE-------------------
T ss_pred CCeE--------EECCCCCCCccc-ceEEE-E-CCEEEEECCCCCCcccceEEEEeCCCCc-------------------
Confidence 5321 111111111111 11222 2 557777777653 46667765542
Q ss_pred ccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC-----CeEEEEeCCCCC
Q 004468 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----AFARLYDRRMLP 249 (751)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D-----~~IriwD~~~~~ 249 (751)
...+...+........+.+ ++.+++.|+.+ ..|.+||+.+.+
T Consensus 187 ----W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 187 ----WTNVTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp ----EEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred ----EEeCCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 1111111111122222222 35777887764 468899987653
No 344
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=93.40 E-value=1.3 Score=48.54 Aligned_cols=177 Identities=11% Similarity=0.078 Sum_probs=94.0
Q ss_pred ceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecc----cCCceeEEEE-------ecCCCCEE
Q 004468 95 NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC----HTRRVKKLAV-------EVGNPHVV 163 (751)
Q Consensus 95 ~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~----h~~~V~~l~~-------sp~~~~~l 163 (751)
....|+|.|...+.++++-...+.|++.|+.... +..+.. .......|+| ++++..++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-----------v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~ly 208 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-----------LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMI 208 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE-----------EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE-----------EEEEEccCccccCCCcEEEEeecccccCCCCCEEE
Confidence 3568999983214556665555778888888531 333221 2235889999 98543355
Q ss_pred EEEeCCCc------EEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC
Q 004468 164 WSASEDGT------LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD 237 (751)
Q Consensus 164 ~s~s~Dg~------I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D 237 (751)
++...++. |.+++........ ..... ..+-. ......++++|.++.++++-..+
T Consensus 209 vad~~~~~~~~~~~V~~i~r~~~G~~~----~~~~~-~~v~~---------------~~~p~giavdp~~g~LYvtd~~~ 268 (496)
T 3kya_A 209 VAIDYDGKGDESPSVYIIKRNADGTFD----DRSDI-QLIAA---------------YKQCNGATIHPINGELYFNSYEK 268 (496)
T ss_dssp EEECCCTTGGGEEEEEEEECCTTSCCS----TTSCE-EEEEE---------------ESCCCCEEECTTTCCEEEEETTT
T ss_pred EEeCCCCCcccCceEEEEecCCCCcee----ecccc-eeecc---------------CCCceEEEEcCCCCeEEEEECCC
Confidence 55444422 5566522211000 00000 01110 11345678899777888888888
Q ss_pred CeEEEEeCC-------CCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEE-eCCCcEEEEECC
Q 004468 238 AFARLYDRR-------MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDVN 309 (751)
Q Consensus 238 ~~IriwD~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~-s~d~~I~lwdl~ 309 (751)
+.|..+|+. +...-.... ...+. ....+. . .+. ....+.|+|+|+|++|+++ +..+.|+.++.+
T Consensus 269 g~V~r~d~~~~~~~~~tg~~~tp~~-~~~~g-~~~~l~--~---~~~-~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 269 GQVFRLDLVDYFKTIKNGGSWDPIV-KNNPN-TFKQLF--T---IAD-PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TEEEEECHHHHHHHHHTTCCCCCBG-GGCTT-TEEEEE--E---CSS-SSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CEEEEEecccccccccCceeecccc-ccccc-ccceeE--e---cCC-CCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 999999987 332100000 00000 000000 0 011 1136789999999965555 557899997765
Q ss_pred C
Q 004468 310 H 310 (751)
Q Consensus 310 ~ 310 (751)
.
T Consensus 341 g 341 (496)
T 3kya_A 341 E 341 (496)
T ss_dssp T
T ss_pred C
Confidence 4
No 345
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=93.25 E-value=0.8 Score=41.89 Aligned_cols=108 Identities=11% Similarity=0.037 Sum_probs=81.3
Q ss_pred cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHH-hhcc-cccchhhhHHHhhHHHhcCC
Q 004468 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAAL-LLKR-KWKNDAQMAIRDCYNARRID 437 (751)
Q Consensus 360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~-~~~r-~w~~d~y~al~d~~~a~~~~ 437 (751)
+.....+...+......|. +..|+..|..++...+.. ...+.+.+.+ +... .+. .-.|+....+++.++
T Consensus 41 p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~------~~~~~~la~~l~~~~~~~~--~~~A~~~~~~al~~~ 111 (177)
T 2e2e_A 41 PQNSEQWALLGEYYLWQND-YSNSLLAYRQALQLRGEN------AELYAALATVLYYQASQHM--TAQTRAMIDKALALD 111 (177)
T ss_dssp CSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHCSC------HHHHHHHHHHHHHHTTTCC--CHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHhC
Confidence 3334445556666666777 889999999999876554 3355566666 4332 221 146788888999999
Q ss_pred CCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 438 SSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 438 ~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
|.+..+++.++.++..++++.+|..++.......|....
T Consensus 112 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 112 SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999999988887654
No 346
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=93.14 E-value=7.6 Score=39.76 Aligned_cols=158 Identities=13% Similarity=0.114 Sum_probs=87.4
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeC--CCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECC
Q 004468 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSY--SSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (751)
Q Consensus 48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~--~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~ 125 (751)
++...+..+.+.+++.+++.+...+..+-+|- .+.+.+. ......+..+.+.|+ +.++ .++.+|.+++.+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~---~~~~~~~~~~~~~~~--g~~~-~~~~~G~~~~s~~D 233 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN---RTTSRRLHNMGFTPD--GRLW-MIVNGGKIAFSDPD 233 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE---CCSSSCEEEEEECTT--SCEE-EEETTTEEEEEETT
T ss_pred CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC---CCCCCccceeEECCC--CCEE-EEeCCceEEEecCC
Confidence 45667899999999998877755444444553 2333332 345678899999887 5555 44567888777422
Q ss_pred CCCCCCCCCCCCCCceee-cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004468 126 RFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (751)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (751)
.+ ... ..+..- ..+...+..+++.+ ++.+++. +.+|.|. +....++.= .
T Consensus 234 ~G--~tW-----~~~~~~~~~~~~~~~~v~~~~-~~~~~~~-g~~g~i~-~S~DgG~tW---------------~----- 283 (327)
T 2xbg_A 234 NS--ENW-----GELLSPLRRNSVGFLDLAYRT-PNEVWLA-GGAGALL-CSQDGGQTW---------------Q----- 283 (327)
T ss_dssp EE--EEE-----CCCBCTTSSCCSCEEEEEESS-SSCEEEE-ESTTCEE-EESSTTSSC---------------E-----
T ss_pred CC--Cee-----EeccCCcccCCcceEEEEecC-CCEEEEE-eCCCeEE-EeCCCCccc---------------E-----
Confidence 11 000 001100 01223578888887 5566554 4567763 333333210 0
Q ss_pred eecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeC
Q 004468 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 245 (751)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~ 245 (751)
.+.........+.++.|.+ ...+++++.+|.|.-++-
T Consensus 284 --~~~~~~~~~~~~~~v~~~~--~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 284 --QDVDVKKVPSNFYKILFFS--PDQGFILGQKGILLRYVT 320 (327)
T ss_dssp --ECGGGTTSSSCCCEEEEEE--TTEEEEECSTTEEEEECC
T ss_pred --EcCccCCCCCCeEEEEEEC--CCceEEEcCCceEEEEcC
Confidence 0000000123466777764 245677778898877764
No 347
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.11 E-value=4.6 Score=42.90 Aligned_cols=168 Identities=13% Similarity=0.063 Sum_probs=89.2
Q ss_pred CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeeccc----CCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004468 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH----TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (751)
Q Consensus 107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h----~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~ 182 (751)
|..++.+ .++.||.-++.... .-+.+... -..|..+..+| +|.+|+..+. .+|.+-.+-.+..
T Consensus 32 ~t~i~~a-~~n~iR~~~i~~~~----------~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g~-~~V~Vv~LP~~~~ 98 (452)
T 3pbp_A 32 GTRIVFI-QDNIIRWYNVLTDS----------LYHSLNFSRHLVLDDTFHVISST-SGDLLCLFND-NEIFVMEVPWGYS 98 (452)
T ss_dssp TTEEEEE-ETTEEEEEETTTCS----------SCEEEECTTTCCCCTTCEEEECT-TSSEEEEECS-SEEEEEECCTTCS
T ss_pred CCEEEEE-ECCEEEEEECCCCC----------cceEEecCcccccCceeEEEECC-CCCEEEEecC-CeEEEEEecCccc
Confidence 3444443 34777877776321 12222221 22577899999 7788877655 6888888874332
Q ss_pred CCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC--CcEEEEEeCCCeEEEEeCCCCCCcc-ccCCCCC
Q 004468 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--PHLLLVGGSDAFARLYDRRMLPPLT-SCQKRMS 259 (751)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~~l~sgs~D~~IriwD~~~~~~~~-~~~~~~~ 259 (751)
...............+.+..- .......|..+.|+|-. +..|++-..|+.||+||+....... .+. .
T Consensus 99 ~~~~~~~~~~~q~~ty~l~~~-------~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~---k 168 (452)
T 3pbp_A 99 NVEDVSIQDAFQIFHYSIDEE-------EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLN---K 168 (452)
T ss_dssp CCCCHHHHHTTEEEEEEGGGC-------C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEES---C
T ss_pred cCcccccccccceeEEEcCCc-------ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchh---c
Confidence 111000001111122222110 01125679999999964 3489999999999999998622110 110 0
Q ss_pred CCCccccccccccccCCccccceEEEEEcCCCCEEEEEe--CCCcEEEE
Q 004468 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLM 306 (751)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s--~d~~I~lw 306 (751)
....|.. .... ..|.+++|.++|-.|.+.+ .+|.||-.
T Consensus 169 ---~~~~fg~-----d~~~-~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 169 ---PNNSFGL-----DARV-NDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ---CCSEEES-----CSSC-CCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ---cccccCC-----Cccc-ceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 0011100 0111 2489999999776666544 44554433
No 348
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=92.57 E-value=1.9 Score=35.84 Aligned_cols=102 Identities=22% Similarity=0.216 Sum_probs=77.7
Q ss_pred HHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchH
Q 004468 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAH 444 (751)
Q Consensus 365 ~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~ 444 (751)
.+...+......+. +..++..+.+++...+.. ...+...+..+... ++.-.|+.....++.++|....++
T Consensus 11 ~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~ 80 (125)
T 1na0_A 11 AWYNLGNAYYKQGD-YDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQ---GDYDEAIEYYQKALELDPNNAEAW 80 (125)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCc------HHHHHHHHHHHHHh---CCHHHHHHHHHHHHHhCCccHHHH
Confidence 34445555666666 888999999998865433 23455566666554 345567777888899999999999
Q ss_pred HHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 445 LYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 445 ~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
+.++.++..++++.+|..++.......|....
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 112 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Confidence 99999999999999999999988888886554
No 349
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=92.56 E-value=0.15 Score=43.61 Aligned_cols=91 Identities=9% Similarity=0.064 Sum_probs=68.6
Q ss_pred hhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHH
Q 004468 380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE 459 (751)
Q Consensus 380 ~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~ 459 (751)
+..|+..|.+++..... .+-....+.+.+.++...+ +.-.|+....+++.++|.+..+++.++.++..+|++.+
T Consensus 6 ~~~A~~~~~~al~~~~~---~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 6 EAQAVPYYEKAIASGLQ---GKDLAECYLGLGSTFRTLG---EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -CCCHHHHHHHHSSCCC---HHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHcCCC---CccHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHH
Confidence 45677788888874211 1112345667777766544 34568888999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCChh
Q 004468 460 ALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 460 a~~~~~~~~~~~p~~~~ 476 (751)
|..++.......|....
T Consensus 80 A~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 80 GVELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHhCCCcHH
Confidence 99999988888886654
No 350
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=92.55 E-value=5.6 Score=38.27 Aligned_cols=139 Identities=14% Similarity=0.032 Sum_probs=73.9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCe------EEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCC
Q 004468 62 GSLLISGSDDTHINVWSYSSRK------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN 135 (751)
Q Consensus 62 g~~LaSgs~Dg~I~IWd~~~~~------~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~ 135 (751)
..+|.....| +|+.=-+.++. ...++-.+-=.++.+++|+|+ +.+.+. .++.+.-.+..+...
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~--G~LYaV--~~G~Ly~~~~~t~~~------ 72 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPG--GELYGV--LNDKIYKGTPPTHDN------ 72 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTT--SCEEEE--ETTEEEEESCCCSTT------
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCC--ccEEEE--eCCeEEEECCCCCCc------
Confidence 4567777777 66665554443 222331111357889999997 776666 667655544432111
Q ss_pred CCCCceeecccCCc--------eeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceec
Q 004468 136 AITPSALYQCHTRR--------VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (751)
Q Consensus 136 ~~~~~~~~~~h~~~--------V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (751)
..+.+-... -..+.|.| ++.+.++ .||.|.-++--+... . ..+.+ +..
T Consensus 73 -----~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~~~~--------~---~Wl~~---a~~-- 128 (236)
T 1tl2_A 73 -----DNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQSDT--------D---NWIAR---ATE-- 128 (236)
T ss_dssp -----CCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCCSTT--------C---CHHHH---SEE--
T ss_pred -----ccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCcCCC--------C---ceecc---ccE--
Confidence 111111222 37888988 6677766 569887776322110 0 00000 000
Q ss_pred ccCCCCCccceEEEEEeCCCCcEEEEEeCCCeE
Q 004468 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240 (751)
Q Consensus 208 ~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~I 240 (751)
+ ....-..+..|.|.|+ +.+.++. |+.+
T Consensus 129 v--g~~gw~~~~~lff~p~-G~Lyav~--dg~l 156 (236)
T 1tl2_A 129 V--GSGGWSGFKFLFFHPN-GYLYAVH--GQQF 156 (236)
T ss_dssp E--ECSSGGGEEEEEECTT-SCEEEEE--TTEE
T ss_pred e--ccCCCCceEEEEECCC-ceEEEEe--CCcE
Confidence 0 0001246789999995 6777666 7764
No 351
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=92.31 E-value=0.71 Score=42.49 Aligned_cols=48 Identities=21% Similarity=0.070 Sum_probs=26.6
Q ss_pred hHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCC
Q 004468 425 MAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDP 472 (751)
Q Consensus 425 ~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p 472 (751)
.|+....+++.++|.+..+++.++.++..+|++.+|+.+.++.....|
T Consensus 125 ~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 125 KAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred hHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 455555555555555555555555555555555555555554444433
No 352
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=92.28 E-value=9.5 Score=38.52 Aligned_cols=68 Identities=12% Similarity=0.124 Sum_probs=36.2
Q ss_pred EECCCCCEEEEEeC----C-------CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC--------C
Q 004468 57 SWNSKGSLLISGSD----D-------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD--------A 117 (751)
Q Consensus 57 ~~s~dg~~LaSgs~----D-------g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D--------g 117 (751)
....++.+++.|+. + ..+.+||+.+.+-...-.......-.++... + +.+++.|+.+ .
T Consensus 41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~lyv~GG~~~~~~~~~~~ 117 (315)
T 4asc_A 41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA-L--NSIYVVGGREIKDGERCLD 117 (315)
T ss_dssp EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE-T--TEEEEECCEESSTTCCBCC
T ss_pred EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE-C--CEEEEEeCCcCCCCCcccc
Confidence 34457888888883 1 1277888887654221101111111122222 3 5677777642 4
Q ss_pred cEEEEECCCC
Q 004468 118 EVRLFNLSRF 127 (751)
Q Consensus 118 ~V~vwd~~~~ 127 (751)
.+.+||+.+.
T Consensus 118 ~~~~~d~~~~ 127 (315)
T 4asc_A 118 SVMCYDRLSF 127 (315)
T ss_dssp CEEEEETTTT
T ss_pred eEEEECCCCC
Confidence 5888888764
No 353
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=92.27 E-value=1.3 Score=45.15 Aligned_cols=113 Identities=18% Similarity=0.125 Sum_probs=85.4
Q ss_pred HHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHH
Q 004468 370 ARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSE 449 (751)
Q Consensus 370 ~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~ 449 (751)
+......|. +..|+..+..++...+.. +......+...+..+... |+.-.|+..+.+++.++|.++.+++.++.
T Consensus 241 a~~~~~~~~-~~~A~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 241 AEELIRDGR-YTDATSKYESVMKTEPSV--AEYTVRSKERICHCFSKD---EKPVEAIRICSEVLQMEPDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHCCSS--HHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHcCC-HHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 444555666 888999999999877553 222223445566666553 34667888899999999999999999999
Q ss_pred HHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHHHHH
Q 004468 450 ALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI 488 (751)
Q Consensus 450 ~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 488 (751)
++..+|++.+|..+++......|........+..+...+
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999998776655555554444
No 354
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=92.24 E-value=1.2 Score=40.81 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=44.2
Q ss_pred hhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 423 AQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 423 ~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
...|.....+++.++|.+..++..++.++..++++.+|+.++++.....|....
T Consensus 89 ~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 142 (184)
T 3vtx_A 89 KQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIR 142 (184)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhh
Confidence 345566677778889999999999999999999999999988888888887653
No 355
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=91.76 E-value=0.77 Score=49.14 Aligned_cols=110 Identities=16% Similarity=0.149 Sum_probs=89.1
Q ss_pred cccCcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhc
Q 004468 356 VATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARR 435 (751)
Q Consensus 356 ~~~~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~ 435 (751)
+...+.....+...+...+..|. +..|+..|..++...+.. ...+..++..+...+ +.-.|+....+++.
T Consensus 19 ~~~~p~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~g---~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 19 YFQSMADVEKHLELGKKLLAAGQ-LADALSQFHAAVDGDPDN------YIAYYRRATVFLAMG---KSKAALPDLTKVIQ 88 (450)
T ss_dssp ----CHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHCC---CHHHHHHHHHHHHh
Confidence 34566777777888888888888 999999999999876543 346677777777654 46678899999999
Q ss_pred CCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468 436 IDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 436 ~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~ 475 (751)
++|....+++.++.++..+|++.+|..++.......|...
T Consensus 89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 128 (450)
T 2y4t_A 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN 128 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence 9999999999999999999999999999999988888654
No 356
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=91.46 E-value=1.2 Score=48.36 Aligned_cols=103 Identities=16% Similarity=0.000 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCc
Q 004468 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF 441 (751)
Q Consensus 362 ~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~ 441 (751)
....+...+...+..|. |..|+..|.+++...++ ...+.+++.+++..+ +.-.|+..+.+++.++|.+.
T Consensus 5 ~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~-------~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~ 73 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKK-YDDAIKYYNWALELKED-------PVFYSNLSACYVSVG---DLKKVVEMSTKALELKPDYS 73 (514)
T ss_dssp HHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCSCCH
T ss_pred hHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhcCcc-------HHHHHhHHHHHHHHh---hHHHHHHHHHHHhccChHHH
Confidence 45567778888888888 99999999999987642 356778888887654 46678999999999999999
Q ss_pred chHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 442 ~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~ 475 (751)
.+++.++.++..+|++.+|..++..+....|...
T Consensus 74 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 107 (514)
T 2gw1_A 74 KVLLRRASANEGLGKFADAMFDLSVLSLNGDFND 107 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCG
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCcc
Confidence 9999999999999999999999998888777544
No 357
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=91.23 E-value=1.7 Score=41.56 Aligned_cols=106 Identities=15% Similarity=0.035 Sum_probs=80.9
Q ss_pred CcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccc--------cchhhhHHHhh
Q 004468 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKW--------KNDAQMAIRDC 430 (751)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w--------~~d~y~al~d~ 430 (751)
.|+....+...+......|. +..|+..+..++...+.. ...+.+.+.++....- .|+.-.|+...
T Consensus 35 ~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~ 107 (217)
T 2pl2_A 35 NPQDPEALYWLARTQLKLGL-VNPALENGKTLVARTPRY------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVL 107 (217)
T ss_dssp SSSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHH
Confidence 44445555566666667777 889999999999877654 3455666666665410 15566788889
Q ss_pred HHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccC
Q 004468 431 YNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLD 471 (751)
Q Consensus 431 ~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~ 471 (751)
.+++.++|.+..+++.++.++..+|++.+|+.++++.....
T Consensus 108 ~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 108 KDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999988876655
No 358
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=91.07 E-value=0.42 Score=40.32 Aligned_cols=82 Identities=11% Similarity=-0.035 Sum_probs=64.0
Q ss_pred HHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHH
Q 004468 383 GIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALD 462 (751)
Q Consensus 383 ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~ 462 (751)
++..|..++...+.. ...+.+.+..++..+ +.-.|+..+.+++.++|.+..+++.++.++..+|++.+|..
T Consensus 4 a~~~~~~al~~~p~~------~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 74 (115)
T 2kat_A 4 ITERLEAMLAQGTDN------MLLRFTLGKTYAEHE---QFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQ 74 (115)
T ss_dssp HHHHHHHHHTTTCCC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCCCc------HHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 566677777655443 235566666666543 45568888999999999999999999999999999999999
Q ss_pred HHHHhcccCCC
Q 004468 463 FAIAAQCLDPS 473 (751)
Q Consensus 463 ~~~~~~~~~p~ 473 (751)
+++......|.
T Consensus 75 ~~~~al~~~~~ 85 (115)
T 2kat_A 75 AWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhccc
Confidence 99888776664
No 359
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=90.86 E-value=6.6 Score=39.64 Aligned_cols=147 Identities=14% Similarity=0.135 Sum_probs=73.1
Q ss_pred CCCEEEEEeC----C-----CcEEEEeCCCCeEEE--EecccCCcceEEEEEecCCCCcEEEEEECC-----CcEEEEEC
Q 004468 61 KGSLLISGSD----D-----THINVWSYSSRKLLH--SIETGHSANVFCTKFVPETSDELVVSGAGD-----AEVRLFNL 124 (751)
Q Consensus 61 dg~~LaSgs~----D-----g~I~IWd~~~~~~~~--~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D-----g~V~vwd~ 124 (751)
++.+++.|+. + ..+.+||+.+.+... .+.. ....- ++... + +.+++.|+.+ ..+.+||+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~-~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd~ 144 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSV-PRNRI-GVGVI-D--GHIYAVGGSHGCIHHNSVERYEP 144 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSS-CCBTC-EEEEE-T--TEEEEECCEETTEECCCEEEEET
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCc-Ccccc-EEEEE-C--CEEEEEcCCCCCcccccEEEECC
Confidence 5677777765 2 458889987765332 2211 11111 22222 3 5777777643 45788888
Q ss_pred CCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC-----cEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-----TLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (751)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg-----~I~iwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (751)
.+..-.. +..+......- +++.. ++.+++.|+.++ .+.+||+.+.+
T Consensus 145 ~~~~W~~--------~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~------------------ 195 (308)
T 1zgk_A 145 ERDEWHL--------VAPMLTRRIGV-GVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE------------------ 195 (308)
T ss_dssp TTTEEEE--------CCCCSSCCBSC-EEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE------------------
T ss_pred CCCeEeE--------CCCCCccccce-EEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe------------------
Confidence 7542211 11111111111 12222 457777887653 46677766542
Q ss_pred cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC-----CeEEEEeCCCCC
Q 004468 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----AFARLYDRRMLP 249 (751)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D-----~~IriwD~~~~~ 249 (751)
...+...+........+.+ ++.+++.|+.+ ..+.+||+.+.+
T Consensus 196 -----W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 196 -----WRMITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp -----EEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred -----EeeCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 1111111111122222333 35777888765 568899987643
No 360
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=90.85 E-value=1.1 Score=43.17 Aligned_cols=100 Identities=23% Similarity=0.165 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCc
Q 004468 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF 441 (751)
Q Consensus 362 ~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~ 441 (751)
....+...+......|. +..|+..+..++...+.. ...+.+.+..+...+ +.-.|+..+..++.++|.+.
T Consensus 138 ~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~ 207 (258)
T 3uq3_A 138 KAEEARLEGKEYFTKSD-WPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLM---SFPEAIADCNKAIEKDPNFV 207 (258)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhCHHHH
Confidence 33444455555666666 889999999999876553 346677777776544 45578888999999999999
Q ss_pred chHHHHHHHHHHhcchHHHHHHHHHhcccC
Q 004468 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLD 471 (751)
Q Consensus 442 ~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~ 471 (751)
.+++.++.++..+|++.+|..++.......
T Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 208 RAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999999999988877776
No 361
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=90.80 E-value=0.56 Score=42.10 Aligned_cols=89 Identities=12% Similarity=0.026 Sum_probs=66.5
Q ss_pred hhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHH
Q 004468 380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE 459 (751)
Q Consensus 380 ~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~ 459 (751)
+..+|..+..++...+.. ...+.+.|..++..+ +.-.|+....+++.++|.++.+|+.++.++..++++.+
T Consensus 13 ~e~ai~~~~~a~~~~p~~------~~~~~~la~~y~~~~---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQK------SIKGFYFAKLYYEAK---EYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp HHHHHHHHHHHSCSHHHH------HTTHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhcccCccc------HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence 334566666555432211 223445566666543 35578888999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCChhh
Q 004468 460 ALDFAIAAQCLDPSNSVM 477 (751)
Q Consensus 460 a~~~~~~~~~~~p~~~~~ 477 (751)
|..++.......|.....
T Consensus 84 A~~~~~~al~~~p~~~~~ 101 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDL 101 (150)
T ss_dssp HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhCCCCHHH
Confidence 999999999999976543
No 362
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=90.45 E-value=1.8 Score=40.61 Aligned_cols=96 Identities=11% Similarity=-0.015 Sum_probs=52.5
Q ss_pred HHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCc-------
Q 004468 369 IARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF------- 441 (751)
Q Consensus 369 ~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~------- 441 (751)
.+......|. +..|+..|..++...+.. ...+.+++.++...+ +.-.|+....+++.+.|.+.
T Consensus 43 lg~~~~~~g~-~~~A~~~~~~al~~~~~~------~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~ 112 (213)
T 1hh8_A 43 IGCMYTILKN-MTEAEKAFTRSINRDKHL------AVAYFQRGMLYYQTE---KYDLAIKDLKEALIQLRGNQLIDYKIL 112 (213)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTTTTCSEEECGGG
T ss_pred HHHHHHHcCC-HHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHcc---cHHHHHHHHHHHHHhCCCccHHHHHHh
Confidence 3344444444 556666666666544332 234445555554432 33445555666666555554
Q ss_pred ---------chHHHHHHHHHHhcchHHHHHHHHHhcccCCCC
Q 004468 442 ---------RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSN 474 (751)
Q Consensus 442 ---------~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~ 474 (751)
.+++.++.++..+|++.+|..++.......|..
T Consensus 113 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 113 GLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred ccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 566666666666666666666666666665543
No 363
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=90.44 E-value=9.3 Score=46.89 Aligned_cols=232 Identities=10% Similarity=0.138 Sum_probs=122.6
Q ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCC
Q 004468 58 WNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAI 137 (751)
Q Consensus 58 ~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~ 137 (751)
.+|..+.||-=. ..++.|+|+.+...+..+ . ....|.-=+|... +.|+-.. +..|..|++... .
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~-~-~~e~VvfWkWis~---~~l~lVT-~~aVyHW~~~~~---------s 136 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAH-T-MTDDVTFWKWISL---NTVALVT-DNAVYHWSMEGE---------S 136 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhccc-c-cCCCceEEEecCC---CeeEEEc-CCeEEEeccCCC---------C
Confidence 456667777654 578999999887777665 2 2456777788765 3444332 578999999642 1
Q ss_pred CCceeeccc----CCceeEEEEecCCCCEEEEEe------CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceec
Q 004468 138 TPSALYQCH----TRRVKKLAVEVGNPHVVWSAS------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (751)
Q Consensus 138 ~~~~~~~~h----~~~V~~l~~sp~~~~~l~s~s------~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (751)
.|.+.+..| ...|..-..+++...++++|- -.|.+.+|........ ...++..+. ....
T Consensus 137 ~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ--~iegha~~F---~~~~------ 205 (1630)
T 1xi4_A 137 QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ--PIEGHAASF---AQFK------ 205 (1630)
T ss_pred ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch--hhhHhHhhh---heec------
Confidence 566666666 344555666674444444443 3467777776654321 111111110 0000
Q ss_pred ccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCC-CCccccCCCCCCCCccccccccccccCCccccceEEEE
Q 004468 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (751)
Q Consensus 208 ~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~ 286 (751)
+ ........+.|.+... . ..+.++|-++... .....++ .+.+..+.|.. ..... .-++.
T Consensus 206 ~-~~~~~~~~l~~f~~~~--~-------~g~kLhi~Ei~~~~~~~~~f~-----kk~~~~~~~~~----~~~Df-pv~~~ 265 (1630)
T 1xi4_A 206 M-EGNAEESTLFCFAVRG--Q-------AGGKLHIIEVGTPPTGNQPFP-----KKAVDVFFPPE----AQNDF-PVAMQ 265 (1630)
T ss_pred c-CCCCCCceEEEEEEec--C-------CCceEEEEecCCCccCCCCCc-----cccccccCCcc----cccCc-ceEEE
Confidence 0 0001112233333321 1 1268888888543 1111111 11122222221 11222 34688
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCc
Q 004468 287 FSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL 336 (751)
Q Consensus 287 fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 336 (751)
.|+.-..+..-+.-|.|++||+.++...-...-..+.+-..+......|+
T Consensus 266 vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~ 315 (1630)
T 1xi4_A 266 ISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGI 315 (1630)
T ss_pred eccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCce
Confidence 88888888999999999999999976443333333333333443333343
No 364
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=89.77 E-value=1.7 Score=48.51 Aligned_cols=104 Identities=17% Similarity=0.066 Sum_probs=81.0
Q ss_pred hHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcc
Q 004468 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (751)
Q Consensus 363 ~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~ 442 (751)
...+...+......|+ +..|+..|.+++...+.. ...+.+.+.++... |+.-.|+....+++.++|.+..
T Consensus 23 ~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~ 92 (568)
T 2vsy_A 23 FVAWLMLADAELGMGD-TTAGEMAVQRGLALHPGH------PEAVARLGRVRWTQ---QRHAEAAVLLQQASDAAPEHPG 92 (568)
T ss_dssp HHHHHHHHHHHHHHTC-HHHHHHHHHHHHTTSTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHC---CCHHHHHHHHHHHHhcCCCCHH
Confidence 3444555666666677 889999999999866543 34566777776654 3456688888899999999999
Q ss_pred hHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 443 a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
+++.++.++..++++.+|..++++.....|....
T Consensus 93 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 126 (568)
T 2vsy_A 93 IALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPY 126 (568)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999998888887653
No 365
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=89.73 E-value=2.6 Score=44.85 Aligned_cols=111 Identities=17% Similarity=0.119 Sum_probs=84.4
Q ss_pred HHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHH
Q 004468 370 ARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSE 449 (751)
Q Consensus 370 ~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~ 449 (751)
+......|. +..|+..+..++...+.. +......+.+.+.++... |+.-.|+..+.+++.++|....+++.++.
T Consensus 264 ~~~~~~~g~-~~~A~~~~~~~l~~~p~~--~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 264 AEELIRDGR-YTDATSKYESVMKTEPSI--AEYTVRSKERICHCFSKD---EKPVEAIRVCSEVLQMEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHTC-HHHHHHHHHHHHHHCCSS--HHHHHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHcCC-HHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 455555666 888899999998866542 222234566777777664 34667889999999999999999999999
Q ss_pred HHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHHH
Q 004468 450 ALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKK 486 (751)
Q Consensus 450 ~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~ 486 (751)
++..++++.+|..+++......|........+..+..
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 374 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQR 374 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 9999999999999999999999987665444444333
No 366
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=89.71 E-value=0.97 Score=42.60 Aligned_cols=99 Identities=14% Similarity=-0.039 Sum_probs=77.6
Q ss_pred HHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcch
Q 004468 364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRA 443 (751)
Q Consensus 364 ~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a 443 (751)
..+...+......|. |..|+..|.+++. + ....+.+++..+...+ +.-.|+....+++.++|....+
T Consensus 7 ~~~~~~g~~~~~~~~-~~~A~~~~~~a~~-------~--~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~ 73 (213)
T 1hh8_A 7 ISLWNEGVLAADKKD-WKGALDAFSAVQD-------P--HSRICFNIGCMYTILK---NMTEAEKAFTRSINRDKHLAVA 73 (213)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHTSSS-------C--CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHHHcC-------C--ChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCccchHH
Confidence 344555666666777 8788888887752 1 1346777787777644 4567888899999999999999
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468 444 HLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 444 ~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~ 475 (751)
++.++.++..++++.+|+.++.......|...
T Consensus 74 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 105 (213)
T 1hh8_A 74 YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 105 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999888888644
No 367
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=89.47 E-value=19 Score=36.25 Aligned_cols=67 Identities=12% Similarity=0.087 Sum_probs=35.6
Q ss_pred ECCCCCEEEEEeC----CC-------cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC-------CcE
Q 004468 58 WNSKGSLLISGSD----DT-------HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-------AEV 119 (751)
Q Consensus 58 ~s~dg~~LaSgs~----Dg-------~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D-------g~V 119 (751)
...++.+++.|+. ++ .+.+||+.+.+....-.......-.++... + +.+++.|+.+ ..+
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~ 129 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-D--DKIYVVAGKDLQTEASLDSV 129 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE-T--TEEEEEEEEBTTTCCEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE-C--CEEEEEcCccCCCCcccceE
Confidence 3457888888883 12 177788877654321101111111222222 3 5777777764 347
Q ss_pred EEEECCCC
Q 004468 120 RLFNLSRF 127 (751)
Q Consensus 120 ~vwd~~~~ 127 (751)
.+||+.+.
T Consensus 130 ~~yd~~~~ 137 (318)
T 2woz_A 130 LCYDPVAA 137 (318)
T ss_dssp EEEETTTT
T ss_pred EEEeCCCC
Confidence 78888753
No 368
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=89.46 E-value=0.78 Score=52.86 Aligned_cols=46 Identities=7% Similarity=-0.153 Sum_probs=27.8
Q ss_pred hhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCC
Q 004468 429 DCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSN 474 (751)
Q Consensus 429 d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~ 474 (751)
...+|+.++|.+..+++.++.++..+|++.+|+.++++.....|.+
T Consensus 522 ~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 567 (681)
T 2pzi_A 522 FYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF 567 (681)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc
Confidence 3445556666666666666666666666666666666665555543
No 369
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=89.22 E-value=2.7 Score=42.25 Aligned_cols=108 Identities=11% Similarity=0.033 Sum_probs=76.2
Q ss_pred cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhccccc-------------------
Q 004468 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWK------------------- 420 (751)
Q Consensus 360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~------------------- 420 (751)
++....+...+...+..|. +..|+..|..++...+.. ...+.+.+.+++..+-.
T Consensus 114 p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~P~~------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 186 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESN-YTDALPLLXDAWQLSNQN------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRY 186 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTSC------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHH
T ss_pred CCchhhHHHHHHHHHhCCC-HHHHHHHHHHHHHhCCcc------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHH
Confidence 3444556667777777777 888888898888877665 12233333333322210
Q ss_pred ------------chhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCC
Q 004468 421 ------------NDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSN 474 (751)
Q Consensus 421 ------------~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~ 474 (751)
++.-.|+....+++.++|.+..+++.++.++...|++.+|...+..+....|.+
T Consensus 187 ~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 187 QGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred HHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 001114455667788999999999999999999999999999999999998976
No 370
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=89.21 E-value=17 Score=39.10 Aligned_cols=115 Identities=9% Similarity=0.163 Sum_probs=64.4
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE--EEEecc-----cCCcceEEEEEecC---CCCcEEEEEEC----
Q 004468 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIET-----GHSANVFCTKFVPE---TSDELVVSGAG---- 115 (751)
Q Consensus 50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~--~~~l~~-----~h~~~V~~v~fsp~---s~~~~l~sgs~---- 115 (751)
-...+.|+|.|+|+++++-...+.|++++..+++. +..+.. ...+.+..|+|+|+ . +.+.++-+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~-g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNN-PYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTS-CEEEEEEEEECTT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcC-CEEEEEEeccccC
Confidence 34678999999999887765445788888655543 222311 12467889999995 2 555555442
Q ss_pred --------CCcEEEEECCCCCCCCCCCCCCCCce-eec-ccCCceeEEEEecCCCCEEEEEeCC
Q 004468 116 --------DAEVRLFNLSRFSGRGLDDNAITPSA-LYQ-CHTRRVKKLAVEVGNPHVVWSASED 169 (751)
Q Consensus 116 --------Dg~V~vwd~~~~~~~~~~~~~~~~~~-~~~-~h~~~V~~l~~sp~~~~~l~s~s~D 169 (751)
...|.-++......... ..+.+. .+. ........|+|.| ++.++++.+..
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~---~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd~ 164 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLE---KPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQ 164 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEE---EEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCT
T ss_pred CCccccccccEEEEEEECCCCCCcC---CcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECCC
Confidence 12454455432111000 001111 111 1123468999999 56787776653
No 371
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=89.16 E-value=2.4 Score=40.35 Aligned_cols=115 Identities=11% Similarity=0.018 Sum_probs=82.1
Q ss_pred cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCc-hhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCC
Q 004468 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPM-LRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (751)
Q Consensus 360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~-~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~ 438 (751)
+.....+...+.-....|. +..|+..+..++...+....-. .....|.+.+..+... |+.-.|+....+++.++|
T Consensus 73 p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~p 148 (228)
T 4i17_A 73 YNLANAYIGKSAAYRDMKN-NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQA---GNIEKAEENYKHATDVTS 148 (228)
T ss_dssp CSHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHTTSSC
T ss_pred cchHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHh---ccHHHHHHHHHHHHhcCC
Confidence 3344445555666666666 8889999999998776541100 0002355555555543 446678999999999999
Q ss_pred C--CcchHHHHHHHHHHhcch---------------------------HHHHHHHHHhcccCCCChhhh
Q 004468 439 S--SFRAHLYMSEALEQLCKY---------------------------KEALDFAIAAQCLDPSNSVMA 478 (751)
Q Consensus 439 ~--~~~a~~~~~~~l~~l~~~---------------------------~~a~~~~~~~~~~~p~~~~~~ 478 (751)
. ...+++.++.++...+.. ++|+.+++......|......
T Consensus 149 ~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~ 217 (228)
T 4i17_A 149 KKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIK 217 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHH
Confidence 9 999999999999999888 888888888888888765543
No 372
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=89.05 E-value=2 Score=41.91 Aligned_cols=104 Identities=18% Similarity=0.042 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCc
Q 004468 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF 441 (751)
Q Consensus 362 ~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~ 441 (751)
....+...+......|. +..|+..+..++...+.. ...+.+.+..+... |+.-.|+....+++.++|...
T Consensus 42 ~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~~~~~ 111 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGL-RALARNDFSQALAIRPDM------PEVFNYLGIYLTQA---GNFDAAYEAFDSVLELDPTYN 111 (275)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCT
T ss_pred hHHHHHHHHHHHHHccc-HHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHc---cCHHHHHHHHHHHHhcCcccc
Confidence 34445556666667777 889999999999876543 34556666666654 345678888999999999999
Q ss_pred chHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 442 ~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~ 475 (751)
.+++.++.++..+|++.+|..++.......|...
T Consensus 112 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 112 YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 9999999999999999999999999988888765
No 373
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=88.98 E-value=2.6 Score=45.66 Aligned_cols=111 Identities=14% Similarity=-0.009 Sum_probs=86.2
Q ss_pred HHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHH
Q 004468 367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLY 446 (751)
Q Consensus 367 ~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~ 446 (751)
...+......|. +..|+..+..++...+...........+.+.+..+....|.|+.-.|+....+++.++|.+..++..
T Consensus 376 ~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 454 (514)
T 2gw1_A 376 NFFAEILTDKND-FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIG 454 (514)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHCCC-HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 334444555565 7788888888887665543222112366788888887666788888999999999999999999999
Q ss_pred HHHHHHHhcchHHHHHHHHHhcccCCCChhhh
Q 004468 447 MSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (751)
Q Consensus 447 ~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~ 478 (751)
++.++..+|++.+|..++.......|......
T Consensus 455 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 486 (514)
T 2gw1_A 455 LAQMKLQQEDIDEAITLFEESADLARTMEEKL 486 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhccccHHHH
Confidence 99999999999999999999999999765543
No 374
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=88.73 E-value=7.9 Score=38.72 Aligned_cols=106 Identities=11% Similarity=0.077 Sum_probs=54.2
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC-----CcEEEEECCCCCCC
Q 004468 61 KGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-----AEVRLFNLSRFSGR 130 (751)
Q Consensus 61 dg~~LaSgs~D-----g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D-----g~V~vwd~~~~~~~ 130 (751)
++++++.|+.+ ..+.+||+.+.+....-.......-.++... + +.+++.|+.+ ..+.+||+.+..-.
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 188 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-S--GVIYCLGGYDGLNILNSVEKYDPHTGHWT 188 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-T--TEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-C--CEEEEECCCCCCcccceEEEEeCCCCcEE
Confidence 57777777654 3588889877653322111111111122222 4 5777777765 45888888754211
Q ss_pred CCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC-----CcEEEEecCCC
Q 004468 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQG 180 (751)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D-----g~I~iwDlr~~ 180 (751)
. +..+....... +++. . ++.+++.|+.+ ..+.+||+.+.
T Consensus 189 ~--------~~~~p~~r~~~-~~~~-~-~~~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 189 N--------VTPMATKRSGA-GVAL-L-NDHIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp E--------ECCCSSCCBSC-EEEE-E-TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred e--------CCCCCcccccc-eEEE-E-CCEEEEEeCCCCCcccceEEEEeCCCC
Confidence 1 11111111111 1222 2 55788888765 35777887664
No 375
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=88.57 E-value=1.1 Score=36.36 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=49.6
Q ss_pred hhhhHHHhhHHHhcCCCCCcc-hHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 422 DAQMAIRDCYNARRIDSSSFR-AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 422 d~y~al~d~~~a~~~~~~~~~-a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
+...|+..+.+++.++|.+.. +++.++.++..++++.+|..+++......|....
T Consensus 15 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 70 (99)
T 2kc7_A 15 DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA 70 (99)
T ss_dssp CHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 355688889999999999999 9999999999999999999999999999997654
No 376
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=88.55 E-value=8.9 Score=38.41 Aligned_cols=106 Identities=17% Similarity=0.148 Sum_probs=53.6
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC-------CcEEEEECCCCC
Q 004468 61 KGSLLISGSDDT-----HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-------AEVRLFNLSRFS 128 (751)
Q Consensus 61 dg~~LaSgs~Dg-----~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D-------g~V~vwd~~~~~ 128 (751)
++++++.|+.++ .+.+||+.+.+....-.......-.++... + +.+++.|+.+ ..+.+||+.+..
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 184 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-G--GLLYAVGGYDVASRQCLSTVECYNATTNE 184 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-T--TEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-C--CEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence 577788887653 477888877654322111111111222222 3 5677776643 358889987542
Q ss_pred CCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC-----cEEEEecCCC
Q 004468 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-----TLRQHDFRQG 180 (751)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg-----~I~iwDlr~~ 180 (751)
-.. +..+....... +++.. ++.+++.|+.++ .+.+||+.+.
T Consensus 185 W~~--------~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 185 WTY--------IAEMSTRRSGA-GVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp EEE--------ECCCSSCCBSC-EEEEE--TTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred EEE--------CCCCccccccc-cEEEE--CCEEEEECCCCCCcccceEEEEeCCCC
Confidence 111 11111111111 22222 557888887653 5777777654
No 377
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=88.47 E-value=30 Score=42.13 Aligned_cols=145 Identities=12% Similarity=0.165 Sum_probs=84.8
Q ss_pred CCEEEEEe----------CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCC
Q 004468 62 GSLLISGS----------DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 131 (751)
Q Consensus 62 g~~LaSgs----------~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~ 131 (751)
..+|+.|. ..|.|.|+++..++.........+++|++++-.. | +|+.|- ..+|+||++...
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~---g-~Lla~i-g~~l~vy~l~~~---- 914 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFN---G-KLLASI-NSTVRLYEWTTE---- 914 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEET---T-EEEEEE-TTEEEEEEECTT----
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeC---C-EEEEEc-CCEEEEEECCCC----
Confidence 46888886 3578999998755544333345678899887552 4 444443 479999999752
Q ss_pred CCCCCCCCceeecc-cCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccC
Q 004468 132 LDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 210 (751)
Q Consensus 132 ~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 210 (751)
+.+. +.+ +-..|..+.... .+++++.|..-..|.++..+... +.+..+.
T Consensus 915 ------~~L~-~~~~~~~~i~~~~l~~-~~~~I~vgD~~~Sv~~~~y~~~~-------------~~L~~~a--------- 964 (1158)
T 3ei3_A 915 ------KELR-TECNHYNNIMALYLKT-KGDFILVGDLMRSVLLLAYKPME-------------GNFEEIA--------- 964 (1158)
T ss_dssp ------SCEE-EEEEECCCSCEEEEEE-ETTEEEEEESSBCEEEEEEETTT-------------TEEEEEE---------
T ss_pred ------ceEE-EEeeccccEEEEEEec-cCCEEEEEEhhheEEEEEEEcCC-------------CeEEEEE---------
Confidence 1122 111 111132222222 24577777777777665544321 1111111
Q ss_pred CCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC
Q 004468 211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (751)
Q Consensus 211 ~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~ 247 (751)
..-...+++++.+--+ ..++.+..++.|.++....
T Consensus 965 ~D~~~~~vta~~~ld~--~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 965 RDFNPNWMSAVEILDD--DNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp ECCSCBCEEEEEEEET--TEEEEEETTSEEEEEEECT
T ss_pred eecccccEEEEEEEcc--CcEEEEcCCCcEEEEecCC
Confidence 1113567888888653 4788899999999987754
No 378
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=88.43 E-value=2.2 Score=43.45 Aligned_cols=99 Identities=17% Similarity=0.147 Sum_probs=81.8
Q ss_pred HHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcch
Q 004468 364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRA 443 (751)
Q Consensus 364 ~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a 443 (751)
..+...+...+..|+ |..|+..+..++...+.. ...+.+.+..+... |+.-.|+....+++.++|.+..+
T Consensus 4 ~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~ 73 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQ-LADALSQFHAAVDGDPDN------YIAYYRRATVFLAM---GKSKAALPDLTKVIALKMDFTAA 73 (359)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCccc------HHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCcchH
Confidence 345566777777888 999999999999876554 34566677776654 34567888899999999999999
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHhcccCC
Q 004468 444 HLYMSEALEQLCKYKEALDFAIAAQCLDP 472 (751)
Q Consensus 444 ~~~~~~~l~~l~~~~~a~~~~~~~~~~~p 472 (751)
++.++.++...+++.+|..++.......|
T Consensus 74 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 102 (359)
T 3ieg_A 74 RLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 99999999999999999999999988888
No 379
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=88.38 E-value=1.1 Score=49.06 Aligned_cols=102 Identities=15% Similarity=0.017 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCc
Q 004468 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF 441 (751)
Q Consensus 362 ~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~ 441 (751)
....+...+...+..|+ |..|+..|..++...+.. ...+.+++..+... |+.-.|+..+.+++.++|.+.
T Consensus 24 ~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~ 93 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKN-FNEAIKYYQYAIELDPNE------PVFYSNISACYIST---GDLEKVIEFTTKALEIKPDHS 93 (537)
T ss_dssp HHHHHHHHHHHHHHTTC-CC-CHHHHHHHHHHCTTC------HHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhCCCC------cHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCchH
Confidence 34566777888888888 889999999999877654 45677888888764 346678999999999999999
Q ss_pred chHHHHHHHHHHhcchHHHHHHHHHhcccCCCC
Q 004468 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSN 474 (751)
Q Consensus 442 ~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~ 474 (751)
.+++.++.++..+|++.+|...+. .....|..
T Consensus 94 ~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~ 125 (537)
T 3fp2_A 94 KALLRRASANESLGNFTDAMFDLS-VLSLNGDF 125 (537)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHH-HHC-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCC
Confidence 999999999999999999998886 44444543
No 380
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=88.34 E-value=0.99 Score=38.72 Aligned_cols=66 Identities=15% Similarity=-0.006 Sum_probs=54.6
Q ss_pred HHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468 409 IRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (751)
Q Consensus 409 ~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~ 477 (751)
..+..++.. |+.-.|+....+++.++|.+..+++.++.++..+|++.+|+.+++......|.....
T Consensus 22 ~~g~~~~~~---g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 87 (121)
T 1hxi_A 22 EEGLSMLKL---ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV 87 (121)
T ss_dssp HHHHHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHc---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 344444443 345568888899999999999999999999999999999999999999999977543
No 381
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=88.32 E-value=1.2 Score=35.12 Aligned_cols=66 Identities=24% Similarity=0.263 Sum_probs=53.2
Q ss_pred hHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 408 CIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 408 ~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
.+.+..+... ++.-.|+....+++.++|....+++.++.++..++++.+|..++.......|....
T Consensus 13 ~~la~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 78 (91)
T 1na3_A 13 YNLGNAYYKQ---GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 78 (91)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHc---cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHH
Confidence 3444444432 34556888889999999999999999999999999999999999998888886543
No 382
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=88.24 E-value=2.9 Score=40.90 Aligned_cols=111 Identities=12% Similarity=-0.014 Sum_probs=85.7
Q ss_pred cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCC
Q 004468 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS 439 (751)
Q Consensus 360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~ 439 (751)
+.....+...+...+..|+ |..|+..+..++...+... .....+...+.++... |+.-.|+....+++.+.|.
T Consensus 12 ~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~~l~~~p~~~---~~~~a~~~lg~~~~~~---~~~~~A~~~~~~~l~~~p~ 84 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGK-YDRAIEYFKAVFTYGRTHE---WAADAQFYLARAYYQN---KEYLLAASEYERFIQIYQI 84 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTC-HHHHHHHHHHHGGGCSCST---THHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCCCCc---chHHHHHHHHHHHHHh---CcHHHHHHHHHHHHHHCCC
Confidence 3445667778888888888 9999999999999876542 1133455666666654 3455688888899999885
Q ss_pred C---cchHHHHHHHHHH--------hcchHHHHHHHHHhcccCCCChhh
Q 004468 440 S---FRAHLYMSEALEQ--------LCKYKEALDFAIAAQCLDPSNSVM 477 (751)
Q Consensus 440 ~---~~a~~~~~~~l~~--------l~~~~~a~~~~~~~~~~~p~~~~~ 477 (751)
+ ..+++.++.++.. ++++.+|+..+..+...+|.....
T Consensus 85 ~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 133 (261)
T 3qky_A 85 DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELV 133 (261)
T ss_dssp CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTH
T ss_pred CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhH
Confidence 5 5589999999999 999999999999999999976543
No 383
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=88.23 E-value=1.3 Score=36.42 Aligned_cols=64 Identities=13% Similarity=0.032 Sum_probs=53.2
Q ss_pred hHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCC
Q 004468 408 CIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSN 474 (751)
Q Consensus 408 ~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~ 474 (751)
.+.+..+... |+.-.|+....+++.++|.+..+++.++.++..++++.+|+.++.......|..
T Consensus 8 ~~~g~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 8 KEQGNSLFKQ---GLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHTT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 3444444443 334568888899999999999999999999999999999999999999999976
No 384
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=88.14 E-value=23 Score=35.55 Aligned_cols=60 Identities=10% Similarity=0.112 Sum_probs=32.1
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC----C-------CcEEEEECCCC
Q 004468 64 LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG----D-------AEVRLFNLSRF 127 (751)
Q Consensus 64 ~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~----D-------g~V~vwd~~~~ 127 (751)
+++.|+ ..+.+||+.+++-...-...............+ +.+++.|+. + ..+.+||+.+.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~ 77 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKE--NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS 77 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTT--CCEEEEEEEEECSSCSSSCEEEEEEEEETTTT
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEEC--CEEEEEcCcccCCCCCccccccceEEecCCCC
Confidence 455565 479999998877543211111112222222334 678888773 1 12677888753
No 385
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=88.04 E-value=6.2 Score=38.42 Aligned_cols=110 Identities=12% Similarity=-0.077 Sum_probs=83.4
Q ss_pred hHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcc-----cccchhhhHHHhhHHHhcCC
Q 004468 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKR-----KWKNDAQMAIRDCYNARRID 437 (751)
Q Consensus 363 ~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r-----~w~~d~y~al~d~~~a~~~~ 437 (751)
...+...+...+..|. |..|+..+..++...+.... ....+...+.++... ...|+.-.|+....+++.+.
T Consensus 52 ~~a~~~lg~~~~~~~~-~~~A~~~~~~~l~~~p~~~~---~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 52 ADAQFYLARAYYQNKE-YLLAASEYERFIQIYQIDPR---VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCTT---HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHCCCCch---hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 4445566666777777 99999999999998876522 123445556665541 01455667888889999999
Q ss_pred CCCcchH-----------------HHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 438 SSSFRAH-----------------LYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 438 ~~~~~a~-----------------~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
|.+..+. +.++.++...|++.+|+..+..+...+|....
T Consensus 128 p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 183 (261)
T 3qky_A 128 PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPW 183 (261)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCch
Confidence 9998877 88999999999999999999999999997543
No 386
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=87.97 E-value=11 Score=37.82 Aligned_cols=148 Identities=8% Similarity=0.102 Sum_probs=74.4
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC---------CCcEEEEECC
Q 004468 61 KGSLLISGSDD------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---------DAEVRLFNLS 125 (751)
Q Consensus 61 dg~~LaSgs~D------g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~---------Dg~V~vwd~~ 125 (751)
++++++.|+.+ ..+.+||+.+.+-...-.......-.++... + +.+++.|+. -..+.+||+.
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 177 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA-N--GLIYVCGGSLGNNVSGRVLNSCEVYDPA 177 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-T--TEEEEECCEESCTTTCEECCCEEEEETT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE-C--CEEEEECCCCCCCCcccccceEEEeCCC
Confidence 67788888765 4588999887654322111111111122222 3 567777654 3458889988
Q ss_pred CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC-----cEEEEecCCCCCCCCCCCCCCccceEEEec
Q 004468 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-----TLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (751)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg-----~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (751)
+..-.. +..+...... .+++.. ++.+++.|+.++ .+.+||+.+.+
T Consensus 178 ~~~W~~--------~~~~p~~r~~-~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~------------------- 227 (306)
T 3ii7_A 178 TETWTE--------LCPMIEARKN-HGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNE------------------- 227 (306)
T ss_dssp TTEEEE--------ECCCSSCCBS-CEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTE-------------------
T ss_pred CCeEEE--------CCCccchhhc-ceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCc-------------------
Confidence 642111 1111111111 122222 457777777643 46777776543
Q ss_pred ccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC-----CeEEEEeCCCC
Q 004468 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----AFARLYDRRML 248 (751)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D-----~~IriwD~~~~ 248 (751)
...+...+.......++.+ ++.+++.|+.+ ..|.+||+.+.
T Consensus 228 ----W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 228 ----WKMVSPMPWKGVTVKCAAV---GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp ----EEECCCCSCCBSCCEEEEE---TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred ----EEECCCCCCCccceeEEEE---CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 1111112222222233333 45788888754 56888888764
No 387
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=87.84 E-value=2.4 Score=40.18 Aligned_cols=76 Identities=13% Similarity=0.142 Sum_probs=57.9
Q ss_pred HHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHH
Q 004468 369 IARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMS 448 (751)
Q Consensus 369 ~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~ 448 (751)
.+......|. +..|+..|..++...+.. ...+.+++.++...+ +.-.|+....+++.++|.+..+++.++
T Consensus 60 lg~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~P~~~~a~~~lg 129 (208)
T 3urz_A 60 LALAYKKNRN-YDKAYLFYKELLQKAPNN------VDCLEACAEMQVCRG---QEKDALRMYEKILQLEADNLAANIFLG 129 (208)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHCCC-HHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4555556666 889999999999987665 346677777776543 456788889999999999999988887
Q ss_pred HHHHHh
Q 004468 449 EALEQL 454 (751)
Q Consensus 449 ~~l~~l 454 (751)
.++...
T Consensus 130 ~~~~~~ 135 (208)
T 3urz_A 130 NYYYLT 135 (208)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766544
No 388
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=87.59 E-value=4.9 Score=38.36 Aligned_cols=106 Identities=10% Similarity=-0.055 Sum_probs=79.6
Q ss_pred HHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcc--
Q 004468 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR-- 442 (751)
Q Consensus 365 ~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~-- 442 (751)
.+...+...+..|+ |..|+..+..++...+.... ....+..++.++...+ +--.|+....+++.+.|.+..
T Consensus 6 ~~~~~a~~~~~~g~-~~~A~~~~~~~~~~~p~~~~---~~~a~~~lg~~~~~~~---~~~~A~~~~~~~l~~~P~~~~~~ 78 (225)
T 2yhc_A 6 EIYATAQQKLQDGN-WRQAITQLEALDNRYPFGPY---SQQVQLDLIYAYYKNA---DLPLAQAAIDRFIRLNPTHPNID 78 (225)
T ss_dssp HHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTSTT---HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCTTHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHCcCCCcHH
Confidence 34556667777787 99999999999987765421 1234455666665543 345678888889999999987
Q ss_pred -hHHHHHHHHHH------------------hcchHHHHHHHHHhcccCCCChhh
Q 004468 443 -AHLYMSEALEQ------------------LCKYKEALDFAIAAQCLDPSNSVM 477 (751)
Q Consensus 443 -a~~~~~~~l~~------------------l~~~~~a~~~~~~~~~~~p~~~~~ 477 (751)
+++.++.++.. .+++.+|+..+..+...+|.....
T Consensus 79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a 132 (225)
T 2yhc_A 79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYT 132 (225)
T ss_dssp HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 78889988876 568999999999999999987643
No 389
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=87.56 E-value=2 Score=46.84 Aligned_cols=95 Identities=18% Similarity=0.106 Sum_probs=75.9
Q ss_pred CCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcc-----cccchhhhHHHhhHHHhcCCC---CCcchHHHHH
Q 004468 377 GKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKR-----KWKNDAQMAIRDCYNARRIDS---SSFRAHLYMS 448 (751)
Q Consensus 377 g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r-----~w~~d~y~al~d~~~a~~~~~---~~~~a~~~~~ 448 (751)
|. +..|+..|.+++...+.. ...+.+.+.++... .-.++.-.|+....+|+.++| ....+++.++
T Consensus 193 g~-~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg 265 (474)
T 4abn_A 193 RH-VMDSVRQAKLAVQMDVLD------GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRA 265 (474)
T ss_dssp HH-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHH
T ss_pred hh-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHH
Confidence 44 778899999999876554 34566666666543 112556678888999999999 9999999999
Q ss_pred HHHHHhcchHHHHHHHHHhcccCCCChhhh
Q 004468 449 EALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (751)
Q Consensus 449 ~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~ 478 (751)
.++..+|++.+|..++.......|......
T Consensus 266 ~~~~~~g~~~~A~~~~~~al~l~p~~~~a~ 295 (474)
T 4abn_A 266 TLHKYEESYGEALEGFSQAAALDPAWPEPQ 295 (474)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999999999999876443
No 390
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=87.50 E-value=7.5 Score=37.00 Aligned_cols=108 Identities=8% Similarity=-0.012 Sum_probs=79.1
Q ss_pred HHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhccc---------------ccchhhhHHHh
Q 004468 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRK---------------WKNDAQMAIRD 429 (751)
Q Consensus 365 ~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~---------------w~~d~y~al~d 429 (751)
.+...+......|. |..|+..|..++..++....- ...+..++.++...+ -.++.-.|+..
T Consensus 43 a~~~lg~~~~~~~~-~~~A~~~~~~~l~~~P~~~~~---~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 118 (225)
T 2yhc_A 43 VQLDLIYAYYKNAD-LPLAQAAIDRFIRLNPTHPNI---DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSD 118 (225)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCTTH---HHHHHHHHHHHHHHHC--------------CCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHHHCcCCCcH---HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHH
Confidence 34455566666677 999999999999988776221 123344444443211 13566778888
Q ss_pred hHHHhcCCCCCcchH-----------------HHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 430 CYNARRIDSSSFRAH-----------------LYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 430 ~~~a~~~~~~~~~a~-----------------~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
..+++...|.+..+. +.++..+...+++.+|+..++.+...+|....
T Consensus 119 ~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 182 (225)
T 2yhc_A 119 FSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQA 182 (225)
T ss_dssp HHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCc
Confidence 999999999998765 56788899999999999999999999997654
No 391
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=87.10 E-value=0.97 Score=40.81 Aligned_cols=68 Identities=10% Similarity=-0.054 Sum_probs=56.8
Q ss_pred hHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 406 CLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 406 ~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
.+.+.+..+...+ +.-.|+....+++.++|.++.+++.++.++..++++.+|+.+........|....
T Consensus 38 ~~~~lg~~~~~~g---~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~ 105 (151)
T 3gyz_A 38 DIYSYAYDFYNKG---RIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT 105 (151)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcH
Confidence 3455566665443 3556888899999999999999999999999999999999999999999997654
No 392
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=87.10 E-value=1.9 Score=35.19 Aligned_cols=49 Identities=10% Similarity=-0.042 Sum_probs=44.3
Q ss_pred hHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004468 425 MAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPS 473 (751)
Q Consensus 425 ~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~ 473 (751)
.|..--.+|+.+||.++++.+.++...++.|++++|+.+.+.+....|.
T Consensus 27 ~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 27 EVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555567899999999999999999999999999999999999888887
No 393
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=86.91 E-value=3.3 Score=45.09 Aligned_cols=106 Identities=12% Similarity=-0.077 Sum_probs=83.4
Q ss_pred chhHHHHHHHHHhhhcCCCh-hHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCC
Q 004468 361 GKCRMLVEIARNSLEEGKHP-YYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS 439 (751)
Q Consensus 361 ~~~~~l~~~~~~~~~~g~~~-~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~ 439 (751)
.....+...+......+. | ..|+..|.+++...+.. ...+.+.+.++... |+.-.|+....+++.++|.
T Consensus 100 ~~a~~~~~lg~~~~~~g~-~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~ 169 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPD-YSPEAEVLLSKAVKLEPEL------VEAWNQLGEVYWKK---GDVTSAHTCFSGALTHCKN 169 (474)
T ss_dssp CCHHHHHHHHHHHTSSSS-CCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHH---TCHHHHHHHHHHHHTTCCC
T ss_pred hhHHHHHHHHHHHHhccc-cHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCC
Confidence 344455556666666666 8 89999999999876554 34667777777765 4466788889999999999
Q ss_pred CcchHHHHHHHHHHh---------cchHHHHHHHHHhcccCCCChhh
Q 004468 440 SFRAHLYMSEALEQL---------CKYKEALDFAIAAQCLDPSNSVM 477 (751)
Q Consensus 440 ~~~a~~~~~~~l~~l---------~~~~~a~~~~~~~~~~~p~~~~~ 477 (751)
..++..++.++..+ +++.+|..++.+.....|.....
T Consensus 170 -~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 215 (474)
T 4abn_A 170 -KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRS 215 (474)
T ss_dssp -HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred -HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 69999999999999 99999999999999888976543
No 394
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=86.72 E-value=1.3 Score=50.94 Aligned_cols=106 Identities=12% Similarity=0.013 Sum_probs=84.1
Q ss_pred cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCC
Q 004468 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS 439 (751)
Q Consensus 360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~ 439 (751)
++....+...+...+..|+ |..|+..|.+++...+.. ...+.+++.++...+ +.-.|+....+|+.++|.
T Consensus 430 p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~P~ 499 (681)
T 2pzi_A 430 SESVELPLMEVRALLDLGD-VAKATRKLDDLAERVGWR------WRLVWYRAVAELLTG---DYDSATKHFTEVLDTFPG 499 (681)
T ss_dssp TTCSHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHSTT
T ss_pred ccchhHHHHHHHHHHhcCC-HHHHHHHHHHHhccCcch------HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCC
Confidence 3344445555566666666 888999999999877654 346778888877654 456789999999999999
Q ss_pred CcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 440 SFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 440 ~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
+..+++.++.++..+|++.+ ..++++.....|.+..
T Consensus 500 ~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~ 535 (681)
T 2pzi_A 500 ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVIS 535 (681)
T ss_dssp CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHH
T ss_pred ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHH
Confidence 99999999999999999999 9888888888887654
No 395
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=86.60 E-value=26 Score=36.24 Aligned_cols=180 Identities=12% Similarity=0.193 Sum_probs=99.4
Q ss_pred ccccEEeccCCCcEEEEEECCC----CCE--EEEE--eC--CCcEEEEeC--CCCeEEEEecc-----cCC-cceEEEEE
Q 004468 40 LSQERELEGHQGCVNAISWNSK----GSL--LISG--SD--DTHINVWSY--SSRKLLHSIET-----GHS-ANVFCTKF 101 (751)
Q Consensus 40 ~~~~~~L~gH~~~V~~l~~s~d----g~~--LaSg--s~--Dg~I~IWd~--~~~~~~~~l~~-----~h~-~~V~~v~f 101 (751)
.+.++.+.. +.+|.+..-|+ |+. ||.+ -. +.+|.||++ .++. +..+.. +.. ..+..+++
T Consensus 59 G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcl 135 (355)
T 3amr_A 59 GKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTL 135 (355)
T ss_dssp SCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEE
T ss_pred CcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEE
Confidence 344555543 67788777663 322 3333 33 578999966 4443 444411 011 45666777
Q ss_pred --ecCCCCcEEEEEECCCcEEEEECCCC-CCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC
Q 004468 102 --VPETSDELVVSGAGDAEVRLFNLSRF-SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (751)
Q Consensus 102 --sp~s~~~~l~sgs~Dg~V~vwd~~~~-~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr 178 (751)
+|.++..+++....+|.+..|++... .+. ...+.++.+.- ...+-.|...+.. ..|..+-+|.-|..+|.+
T Consensus 136 y~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~----~~~~lVR~f~l-gsq~EgcvvDd~~-g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 136 YHSQKTGKYYAMVTGKEGEFEQYELKADKNGY----ISGKKVRAFKM-NSQTEGMAADDEY-GRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp EECTTTCCEEEEEECSSSEEEEEEEEECTTSC----EEEEEEEEEEC-SSCEEEEEEETTT-TEEEEEETTTEEEEEECS
T ss_pred EecCCCCcEEEEEECCCCeEEEEEEEeCCCCc----ccceEEEEecC-CCCcceEEEcCCC-CeEEEecccceEEEEeCC
Confidence 67642236778888999999999531 110 01244555553 3467788888744 566678888766666654
Q ss_pred CCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEe--CCCCcEEEEEe-CCCeEEEEeCC
Q 004468 179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS--STRPHLLLVGG-SDAFARLYDRR 246 (751)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~s--p~~~~~l~sgs-~D~~IriwD~~ 246 (751)
..... ....+... ....-...+..|++- +++..+|++++ .+....+||+.
T Consensus 210 p~~~~---------~~~~v~~~---------~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 210 PDGGS---------NGTVIDRA---------DGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TTSCS---------CCEEEEEB---------SSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred cCCCC---------CceEEEEe---------cCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 32200 00111111 011122357777774 32223566655 67799999996
No 396
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=86.56 E-value=1.2 Score=38.49 Aligned_cols=68 Identities=19% Similarity=0.105 Sum_probs=56.5
Q ss_pred hHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 406 CLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 406 ~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
.+.+++..+.+.+ +.-.|+....+++.++|.+..+++.++.|+..++++.+|+.++.......|....
T Consensus 15 ~~~~~G~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 82 (126)
T 4gco_A 15 EEKNKGNEYFKKG---DYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK 82 (126)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH
Confidence 3445666666543 3556888899999999999999999999999999999999999999888887653
No 397
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=86.39 E-value=5.2 Score=41.60 Aligned_cols=49 Identities=27% Similarity=0.197 Sum_probs=24.2
Q ss_pred hHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004468 425 MAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPS 473 (751)
Q Consensus 425 ~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~ 473 (751)
.|+....+++.++|....+++.++.++...|++.+|..++++.....|.
T Consensus 323 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3444444445555555555555555555555555555554444444443
No 398
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=86.03 E-value=3.1 Score=37.94 Aligned_cols=50 Identities=10% Similarity=0.121 Sum_probs=45.5
Q ss_pred HHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468 426 AIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 426 al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~ 475 (751)
|+....+++.++|.++.+++.++.++...|++.+|..++.......|.+.
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 142 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQ 142 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC
Confidence 56667888999999999999999999999999999999999998888753
No 399
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=85.84 E-value=3.7 Score=42.08 Aligned_cols=100 Identities=10% Similarity=0.052 Sum_probs=80.2
Q ss_pred HHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHH
Q 004468 367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLY 446 (751)
Q Consensus 367 ~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~ 446 (751)
...+......|. +..|+..+..++...+.. ...+.+.+..+...+ +.-.|+....+++.++|....++..
T Consensus 68 ~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~ 137 (368)
T 1fch_A 68 FEEGLRRLQEGD-LPNAVLLFEAAVQQDPKH------MEAWQYLGTTQAENE---QELLAISALRRCLELKPDNQTALMA 137 (368)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHSCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHCCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCc---CHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 445666667777 889999999999866543 345566676666543 4567888899999999999999999
Q ss_pred HHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 447 MSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 447 ~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
++.++..+|++.+|..++.......|....
T Consensus 138 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 167 (368)
T 1fch_A 138 LAVSFTNESLQRQACEILRDWLRYTPAYAH 167 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSTTTGG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence 999999999999999999998888886543
No 400
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=85.67 E-value=0.56 Score=38.64 Aligned_cols=63 Identities=16% Similarity=0.067 Sum_probs=50.6
Q ss_pred HhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCC
Q 004468 407 LCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDP 472 (751)
Q Consensus 407 ~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p 472 (751)
+.+.+.+++.. |+.-.|+....+++.++|....+++.++.++..++++.+|..+++......|
T Consensus 10 ~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 10 RYALAQEHLKH---DNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp HHHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 34455555543 3455688889999999999999999999999999999999999887765544
No 401
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=85.58 E-value=6.6 Score=39.25 Aligned_cols=109 Identities=12% Similarity=-0.018 Sum_probs=81.0
Q ss_pred HHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCC---chhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCC
Q 004468 364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGP---MLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 440 (751)
Q Consensus 364 ~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~---~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~ 440 (751)
..+...+.-....|+ +..|+..+.+++...+....+ ......+.+.+..+...+ +.-.|+....+++.++|.+
T Consensus 194 ~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~ 269 (330)
T 3hym_B 194 FVMHEVGVVAFQNGE-WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK---KYAEALDYHRQALVLIPQN 269 (330)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHccc-HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHhhCccc
Confidence 344445555556666 788888888888765432221 112346667777776554 3556888888999999999
Q ss_pred cchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 441 FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 441 ~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
..++..++.++..+|++.+|..++.......|....
T Consensus 270 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 305 (330)
T 3hym_B 270 ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF 305 (330)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchH
Confidence 999999999999999999999999999998887654
No 402
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=85.45 E-value=18 Score=37.35 Aligned_cols=78 Identities=12% Similarity=0.086 Sum_probs=48.5
Q ss_pred CCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCce----eecccCCceeEEEEecC---CCCEEE
Q 004468 92 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA----LYQCHTRRVKKLAVEVG---NPHVVW 164 (751)
Q Consensus 92 h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~----~~~~h~~~V~~l~~sp~---~~~~l~ 164 (751)
.-.....++|.|+ |.++++--..|.|++++...+.. ..+. .+.........|+++|+ ++.+++
T Consensus 30 gL~~P~~ia~~pd--G~llVter~~G~I~~v~~~~g~~--------~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv 99 (347)
T 3das_A 30 GLNSPWGLAPLPG--GDLLVSSRDEATITRVDAKTGRK--------TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYA 99 (347)
T ss_dssp CCSSEEEEEECTT--SCEEEEETTTCEEEEECTTTCCE--------EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEE
T ss_pred CCCCceEEEEcCC--CcEEEEEecCCEEEEEECCCCcE--------eeecccCceeecCCCCceeeEeccccccCCEEEE
Confidence 3456789999999 78877765589999887653211 1111 12223456789999984 455665
Q ss_pred EEe--CCCcEEEEecCC
Q 004468 165 SAS--EDGTLRQHDFRQ 179 (751)
Q Consensus 165 s~s--~Dg~I~iwDlr~ 179 (751)
+-+ .+..|.-|.+..
T Consensus 100 ~yt~~~~~~v~R~~~~~ 116 (347)
T 3das_A 100 YFTSASDNRIVRMLYDE 116 (347)
T ss_dssp EEECSSSEEEEEEEBCT
T ss_pred EEecCCCCEEEEEEeCC
Confidence 433 445565566554
No 403
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=84.79 E-value=5 Score=41.12 Aligned_cols=98 Identities=12% Similarity=0.063 Sum_probs=68.7
Q ss_pred HHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHH
Q 004468 367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLY 446 (751)
Q Consensus 367 ~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~ 446 (751)
...+.-....|. +..|+..+..++...+.. ...+.+.+..+... |+.-.|+....+++.++|....++..
T Consensus 221 ~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~ 290 (368)
T 1fch_A 221 CGLGVLFNLSGE-YDKAVDCFTAALSVRPND------YLLWNKLGATLANG---NQSEEAVAAYRRALELQPGYIRSRYN 290 (368)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 334444455555 777888888887765443 23555666666553 34566777788888888888888888
Q ss_pred HHHHHHHhcchHHHHHHHHHhcccCCCC
Q 004468 447 MSEALEQLCKYKEALDFAIAAQCLDPSN 474 (751)
Q Consensus 447 ~~~~l~~l~~~~~a~~~~~~~~~~~p~~ 474 (751)
++.++..+|++.+|..++.......|..
T Consensus 291 l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 291 LGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 8888888888888888887776666654
No 404
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=84.75 E-value=2.5 Score=43.66 Aligned_cols=98 Identities=12% Similarity=0.069 Sum_probs=78.8
Q ss_pred HHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHH
Q 004468 366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHL 445 (751)
Q Consensus 366 l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~ 445 (751)
+...+...+..|. +..|+..+..++...+.. ...+.+.+..+... |+.-.|+....+++.++|....++.
T Consensus 68 ~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~ 137 (365)
T 4eqf_A 68 AFEEGLKRLKEGD-LPVTILFMEAAILQDPGD------AEAWQFLGITQAEN---ENEQAAIVALQRCLELQPNNLKALM 137 (365)
T ss_dssp HHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHC---CCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 4456666777777 889999999999876554 34566667776654 3456788889999999999999999
Q ss_pred HHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004468 446 YMSEALEQLCKYKEALDFAIAAQCLDPS 473 (751)
Q Consensus 446 ~~~~~l~~l~~~~~a~~~~~~~~~~~p~ 473 (751)
.++.++..+|++.+|..++.......|.
T Consensus 138 ~l~~~~~~~g~~~~A~~~~~~al~~~p~ 165 (365)
T 4eqf_A 138 ALAVSYTNTSHQQDACEALKNWIKQNPK 165 (365)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999888776664
No 405
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=84.66 E-value=10 Score=33.67 Aligned_cols=101 Identities=15% Similarity=0.203 Sum_probs=73.7
Q ss_pred HHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchH
Q 004468 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAH 444 (751)
Q Consensus 365 ~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~ 444 (751)
.+...+......|. +..++..+..++...+.. ...+.+.+..+... ++.-.|+.-..+++.++|....++
T Consensus 44 ~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~ 113 (186)
T 3as5_A 44 VALHLGIAYVKTGA-VDRGTELLERSLADAPDN------VKVATVLGLTYVQV---QKYDLAVPLLIKVAEANPINFNVR 113 (186)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHh---cCHHHHHHHHHHHHhcCcHhHHHH
Confidence 34444555555666 888888888888765433 23455555555543 344567777788888999999999
Q ss_pred HHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468 445 LYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 445 ~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~ 475 (751)
+.++.++..++++.+|..++.......|...
T Consensus 114 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 144 (186)
T 3as5_A 114 FRLGVALDNLGRFDEAIDSFKIALGLRPNEG 144 (186)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHhcCccch
Confidence 9999999999999999999988887777654
No 406
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=84.65 E-value=6.3 Score=40.91 Aligned_cols=86 Identities=14% Similarity=0.041 Sum_probs=45.4
Q ss_pred hhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHH
Q 004468 380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE 459 (751)
Q Consensus 380 ~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~ 459 (751)
+..|+..+..++...+.. ...+.+.+.++...+ +.-.|+....+++.++|.+..++..++.++...|++.+
T Consensus 253 ~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 323 (388)
T 1w3b_A 253 IDLAIDTYRRAIELQPHF------PDAYCNLANALKEKG---SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHHHHHHHHHHHTCSSC------HHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHH
Confidence 445555555555433222 123444444444332 23445555555666666666666666666666666666
Q ss_pred HHHHHHHhcccCCCC
Q 004468 460 ALDFAIAAQCLDPSN 474 (751)
Q Consensus 460 a~~~~~~~~~~~p~~ 474 (751)
|..++++.....|..
T Consensus 324 A~~~~~~al~~~p~~ 338 (388)
T 1w3b_A 324 AVRLYRKALEVFPEF 338 (388)
T ss_dssp HHHHHHHHTTSCTTC
T ss_pred HHHHHHHHHhcCCCc
Confidence 666666665555543
No 407
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=84.58 E-value=6.1 Score=38.39 Aligned_cols=104 Identities=10% Similarity=0.045 Sum_probs=77.0
Q ss_pred HHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHH
Q 004468 366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHL 445 (751)
Q Consensus 366 l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~ 445 (751)
+...+......|+ +..|+..+..++. .+. .+......|.+.+..+...+ +.-.|+....+++.++|....++.
T Consensus 40 ~~~l~~~~~~~~~-~~~A~~~~~~a~~-~~~--~~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~ 112 (272)
T 3u4t_A 40 YNRRAVCYYELAK-YDLAQKDIETYFS-KVN--ATKAKSADFEYYGKILMKKG---QDSLAIQQYQAAVDRDTTRLDMYG 112 (272)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHT-TSC--TTTCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred HHHHHHHHHHHhh-HHHHHHHHHHHHh-ccC--chhHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhcCcccHHHHH
Confidence 3344555555666 8888888888887 332 22222334667777776653 456788888899999999999999
Q ss_pred HHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 446 YMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 446 ~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
.++.++..++++.+|..++.......|....
T Consensus 113 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 143 (272)
T 3u4t_A 113 QIGSYFYNKGNFPLAIQYMEKQIRPTTTDPK 143 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHGGGCCSSCCCHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHhhcCCCcHH
Confidence 9999999999999999999988888776653
No 408
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=84.29 E-value=2.4 Score=43.80 Aligned_cols=96 Identities=18% Similarity=0.119 Sum_probs=65.9
Q ss_pred HHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHH
Q 004468 368 EIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYM 447 (751)
Q Consensus 368 ~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~ 447 (751)
..+......|. +..|+..+.+++...+.. ...+.+.+.++... |+.-.|+....+++.++|.+..+++.+
T Consensus 218 ~l~~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l 287 (365)
T 4eqf_A 218 GLGVLFHLSGE-FNRAIDAFNAALTVRPED------YSLWNRLGATLANG---DRSEEAVEAYTRALEIQPGFIRSRYNL 287 (365)
T ss_dssp HHHHHHHHHTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHCCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 33444444555 777788888877765543 33555666666553 345567777778888888888888888
Q ss_pred HHHHHHhcchHHHHHHHHHhcccCCC
Q 004468 448 SEALEQLCKYKEALDFAIAAQCLDPS 473 (751)
Q Consensus 448 ~~~l~~l~~~~~a~~~~~~~~~~~p~ 473 (751)
+.++..+|++.+|..++.......|.
T Consensus 288 ~~~~~~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 288 GISCINLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 88888888888888887776665554
No 409
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=83.88 E-value=50 Score=35.42 Aligned_cols=66 Identities=11% Similarity=0.036 Sum_probs=40.2
Q ss_pred CcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeec------ccCCceeEEEEecC---CCCEE
Q 004468 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ------CHTRRVKKLAVEVG---NPHVV 163 (751)
Q Consensus 93 ~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~------~h~~~V~~l~~sp~---~~~~l 163 (751)
-.....++|.|+ |+++++-...+.|++++...+.. ..+..+. ........|+|+|+ ++.++
T Consensus 26 l~~P~~~a~~pd--G~l~V~e~~gg~I~~~~~~~g~~--------~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lY 95 (454)
T 1cru_A 26 LNKPHALLWGPD--NQIWLTERATGKILRVNPESGSV--------KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIY 95 (454)
T ss_dssp CSSEEEEEECTT--SCEEEEETTTCEEEEECTTTCCE--------EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEE
T ss_pred CCCceEEEEcCC--CcEEEEEcCCCEEEEEECCCCcE--------eEEecCCccccccCCCCceeEEEECCCcCcCCEEE
Confidence 345779999999 78777754445688887543211 1111121 12455679999996 66666
Q ss_pred EEEeC
Q 004468 164 WSASE 168 (751)
Q Consensus 164 ~s~s~ 168 (751)
++-+.
T Consensus 96 v~~s~ 100 (454)
T 1cru_A 96 ISGTF 100 (454)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 66543
No 410
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=83.73 E-value=4.3 Score=38.57 Aligned_cols=100 Identities=13% Similarity=0.123 Sum_probs=59.1
Q ss_pred HHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHH
Q 004468 366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHL 445 (751)
Q Consensus 366 l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~ 445 (751)
+...+.-....|. +..|+..+..++...+.. ...+...+..+...+ +.-.|+....+++.++|....+++
T Consensus 94 ~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~ 163 (243)
T 2q7f_A 94 YYGAGNVYVVKEM-YKEAKDMFEKALRAGMEN------GDLFYMLGTVLVKLE---QPKLALPYLQRAVELNENDTEARF 163 (243)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHHTCCS------HHHHHHHHHHHHHTS---CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhCCccHHHHH
Confidence 3334444444555 666777777766654432 224445555555433 344556666666667777777777
Q ss_pred HHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468 446 YMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 446 ~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~ 475 (751)
.++.++...+++.+|..++.......|...
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 193 (243)
T 2q7f_A 164 QFGMCLANEGMLDEALSQFAAVTEQDPGHA 193 (243)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence 777777777777777766666666666543
No 411
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=83.28 E-value=45 Score=34.39 Aligned_cols=125 Identities=11% Similarity=0.061 Sum_probs=69.9
Q ss_pred cEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE--EEEe---cccCCcceEEEEEecC--CCCcEEEEEE-
Q 004468 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSI---ETGHSANVFCTKFVPE--TSDELVVSGA- 114 (751)
Q Consensus 43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~--~~~l---~~~h~~~V~~v~fsp~--s~~~~l~sgs- 114 (751)
+.++...-...+.|+|.|+|++|++--..|.|++++..+++. +..+ .....+....|+|+|+ .++.+.++-+
T Consensus 24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~ 103 (347)
T 3das_A 24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS 103 (347)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence 344444456778999999999888776689999998765543 2222 1233567899999995 2244444322
Q ss_pred -CCCcEEEEECCCCCCCCCCCCCCCCce-eec-ccCCceeEEEEecCCCCEEEEEeC
Q 004468 115 -GDAEVRLFNLSRFSGRGLDDNAITPSA-LYQ-CHTRRVKKLAVEVGNPHVVWSASE 168 (751)
Q Consensus 115 -~Dg~V~vwd~~~~~~~~~~~~~~~~~~-~~~-~h~~~V~~l~~sp~~~~~l~s~s~ 168 (751)
.+..|.-|.+.............+.+. .+. .....-..|+|.| ++.++++.+.
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd 159 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGE 159 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBC
T ss_pred CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECC
Confidence 344555555543110000000011111 121 1122346799999 5688877654
No 412
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=82.94 E-value=32 Score=34.50 Aligned_cols=59 Identities=7% Similarity=0.001 Sum_probs=30.0
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEeccc-CCcceEEEEEecCCCCcEEEEEEC----CC-------cEEEEECCCC
Q 004468 64 LLISGSDDTHINVWSYSSRKLLHSIETG-HSANVFCTKFVPETSDELVVSGAG----DA-------EVRLFNLSRF 127 (751)
Q Consensus 64 ~LaSgs~Dg~I~IWd~~~~~~~~~l~~~-h~~~V~~v~fsp~s~~~~l~sgs~----Dg-------~V~vwd~~~~ 127 (751)
+++.|+. .+.+||+.+.+....-... ....-.++. ..+ +.+++.|+. ++ .+.+||+.+.
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~~--~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~ 88 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIV-TQQ--NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS 88 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEE-CSS--SCEEEEESSCC-------CCCBEEEEEETTTT
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEE-EEC--CEEEEECCcccCccccCCCccccEEEEeCCCC
Confidence 4444543 3788999877654321111 111222332 333 577777773 12 1677887753
No 413
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=82.80 E-value=13 Score=34.96 Aligned_cols=104 Identities=13% Similarity=0.011 Sum_probs=79.0
Q ss_pred hHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcc
Q 004468 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (751)
Q Consensus 363 ~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~ 442 (751)
...+...+......|. +..++..+..++...+.. ...+...+..+... |+.-.|+.-..+++.++|....
T Consensus 57 ~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~ 126 (243)
T 2q7f_A 57 AIPYINFANLLSSVNE-LERALAFYDKALELDSSA------ATAYYGAGNVYVVK---EMYKEAKDMFEKALRAGMENGD 126 (243)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHTCCSHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCcc------hHHHHHHHHHHHHh---ccHHHHHHHHHHHHHhCCCCHH
Confidence 3444455566666666 888999999988865443 23455566666543 3456678888889999999999
Q ss_pred hHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 443 a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
++..++.++..++++.+|..++.......|....
T Consensus 127 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 160 (243)
T 2q7f_A 127 LFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE 160 (243)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH
Confidence 9999999999999999999999998888886543
No 414
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=82.73 E-value=28 Score=39.78 Aligned_cols=158 Identities=10% Similarity=0.078 Sum_probs=80.3
Q ss_pred CCCCEEEEEeCC----CcEEEEeCCCCeEEEEe-c-----ccCCcceEEEEEec-CCCCcEEEEEECCC------cEEEE
Q 004468 60 SKGSLLISGSDD----THINVWSYSSRKLLHSI-E-----TGHSANVFCTKFVP-ETSDELVVSGAGDA------EVRLF 122 (751)
Q Consensus 60 ~dg~~LaSgs~D----g~I~IWd~~~~~~~~~l-~-----~~h~~~V~~v~fsp-~s~~~~l~sgs~Dg------~V~vw 122 (751)
.++.+++.||.+ ..+.+||+.+++....- . ......-.++...+ + +.+++.|+.++ .+.+|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~--~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRN--NQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTT--TEEEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccC--CEEEEEcCCCCCCCccccEEEE
Confidence 467788888753 35888888776533221 0 01111123334443 4 67888877543 47788
Q ss_pred ECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC--cEEEEecCCCCCCCCCCCCCCccceEEEec
Q 004468 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (751)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg--~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (751)
|+.+..-.. +..+...... .+++... ++.+++.||.++ .+.+||+.+.. |..
T Consensus 474 d~~t~~W~~--------~~~~p~~R~~-h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~----------------W~~ 527 (695)
T 2zwa_A 474 DMKTREWSM--------IKSLSHTRFR-HSACSLP-DGNVLILGGVTEGPAMLLYNVTEEI----------------FKD 527 (695)
T ss_dssp ETTTTEEEE--------CCCCSBCCBS-CEEEECT-TSCEEEECCBCSSCSEEEEETTTTE----------------EEE
T ss_pred eCCCCcEEE--------CCCCCCCccc-ceEEEEc-CCEEEEECCCCCCCCEEEEECCCCc----------------eEE
Confidence 887532111 1111111111 1222223 568888888765 68888887653 110
Q ss_pred ccCceecccCCCCCccceEEEEEeCCCCcEEEEEeC--C-----CeEEEEeCCCCC
Q 004468 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS--D-----AFARLYDRRMLP 249 (751)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~--D-----~~IriwD~~~~~ 249 (751)
..... ..+.......++.+....+.+++.|+. + ..+.+||+.+..
T Consensus 528 ~~~~g----~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 528 VTPKD----EFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp CCCSS----GGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred ccCCC----CCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 00000 001111122335556543567777775 2 468899988754
No 415
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=82.66 E-value=23 Score=35.46 Aligned_cols=106 Identities=9% Similarity=0.040 Sum_probs=54.0
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC-----CcEEEEECCCCCCC
Q 004468 61 KGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-----AEVRLFNLSRFSGR 130 (751)
Q Consensus 61 dg~~LaSgs~D-----g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D-----g~V~vwd~~~~~~~ 130 (751)
++++++.|+.+ ..+.+||+.+.+....-.......-.++... + +.+++.|+.+ ..+.+||+.+..-.
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 197 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-N--RLLYAVGGFDGTNRLNSAECYYPERNEWR 197 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-T--TEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-C--CEEEEEeCCCCCCcCceEEEEeCCCCeEe
Confidence 56777777643 3588889877654322111111111122222 3 5777777765 45888888754221
Q ss_pred CCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC-----CcEEEEecCCC
Q 004468 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQG 180 (751)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D-----g~I~iwDlr~~ 180 (751)
. +..+....... +++.. ++.+++.|+.+ ..+.+||+.+.
T Consensus 198 ~--------~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 198 M--------ITAMNTIRSGA-GVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp E--------CCCCSSCCBSC-EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred e--------CCCCCCccccc-eEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 1 11111111111 22222 55788888765 45777777654
No 416
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=82.41 E-value=14 Score=38.09 Aligned_cols=111 Identities=14% Similarity=0.150 Sum_probs=62.3
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecC-CCCcEEEEE-ECCCcEEEEECCCCCCCCCCCCCCCCc
Q 004468 63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE-TSDELVVSG-AGDAEVRLFNLSRFSGRGLDDNAITPS 140 (751)
Q Consensus 63 ~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~-s~~~~l~sg-s~Dg~V~vwd~~~~~~~~~~~~~~~~~ 140 (751)
.+++.++.||.|.-.|..+|+.+.++......++..+.-... .++..++.. ..||.|..++...+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~----------~ 80 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQ----------K 80 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEE----------E
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcE----------E
Confidence 478899999999999999999999985442223332211110 012333333 5789998888765311 1
Q ss_pred eeecc----cCCceeE---EEE-ec---CCCCEEEEEeCCCcEEEEecCCCCCC
Q 004468 141 ALYQC----HTRRVKK---LAV-EV---GNPHVVWSASEDGTLRQHDFRQGSSC 183 (751)
Q Consensus 141 ~~~~~----h~~~V~~---l~~-sp---~~~~~l~s~s~Dg~I~iwDlr~~~~~ 183 (751)
..+.- ...++.. ... .+ ..+..+.+|+.+|++...|+++++..
T Consensus 81 ~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~ 134 (339)
T 2be1_A 81 LPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEII 134 (339)
T ss_dssp EEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEE
T ss_pred eeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEE
Confidence 11100 1111111 000 00 02346678888999988888887654
No 417
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=82.16 E-value=2.5 Score=35.89 Aligned_cols=67 Identities=16% Similarity=0.107 Sum_probs=54.2
Q ss_pred HhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 407 LCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 407 ~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
+..++..++..+ +.-.|+....+++.++|.+..+++.++.++..++++.+|+.++.......|....
T Consensus 7 ~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 73 (126)
T 3upv_A 7 ARLEGKEYFTKS---DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR 73 (126)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Confidence 334444444433 3456788888999999999999999999999999999999999999988887653
No 418
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=82.15 E-value=15 Score=37.73 Aligned_cols=53 Identities=11% Similarity=0.188 Sum_probs=28.5
Q ss_pred CCCEEEEEeC-C---------CcEEEEeCCCCeEEEEeccc-CCcceEEEEEecCCCCcEEEEEECC
Q 004468 61 KGSLLISGSD-D---------THINVWSYSSRKLLHSIETG-HSANVFCTKFVPETSDELVVSGAGD 116 (751)
Q Consensus 61 dg~~LaSgs~-D---------g~I~IWd~~~~~~~~~l~~~-h~~~V~~v~fsp~s~~~~l~sgs~D 116 (751)
++++++.|+. + ..+.+||+.+.+-...-... ....-.++.. .+ +.+++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~--~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HN--GKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ET--TEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-EC--CEEEEEeCcC
Confidence 5777777775 2 46888998876543221111 1111112222 34 6788888765
No 419
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=82.06 E-value=72 Score=38.80 Aligned_cols=77 Identities=18% Similarity=0.150 Sum_probs=53.5
Q ss_pred CCcEEEEEECCC------CCEEEEEeC-CCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004468 50 QGCVNAISWNSK------GSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (751)
Q Consensus 50 ~~~V~~l~~s~d------g~~LaSgs~-Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw 122 (751)
.+.|.|+++.|. ++++|.|.. |++|+|+++.+.+.+.....+-.....++.+..-.+..+|..|-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 568999999863 469999997 9999999998766655432222234455544432214678889999998777
Q ss_pred ECCC
Q 004468 123 NLSR 126 (751)
Q Consensus 123 d~~~ 126 (751)
.+..
T Consensus 633 ~~d~ 636 (1158)
T 3ei3_A 633 GLNI 636 (1158)
T ss_dssp EECT
T ss_pred EEcC
Confidence 7654
No 420
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=81.72 E-value=3.8 Score=39.25 Aligned_cols=101 Identities=15% Similarity=0.083 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCC-
Q 004468 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS- 440 (751)
Q Consensus 362 ~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~- 440 (751)
....+...+...+..|+ |..|+..+..++... .. ...+..++..+...+ +.-.|+....+++.++|..
T Consensus 4 ~a~~~~~~g~~~~~~~~-~~~A~~~~~~a~~~~-~~------~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~~~~~ 72 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQ-FDEAIEHYNKAWELH-KD------ITYLNNRAAAEYEKG---EYETAISTLNDAVEQGREMR 72 (258)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHS-CC------THHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhh-cc------HHHHHHHHHHHHHcc---cHHHHHHHHHHHHHhCcccc
Confidence 34556667777788888 999999999999876 32 245667777776654 4556888888899988877
Q ss_pred ------cchHHHHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004468 441 ------FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPS 473 (751)
Q Consensus 441 ------~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~ 473 (751)
..+++.++.++..++++.+|..++.......|.
T Consensus 73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 111 (258)
T 3uq3_A 73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT 111 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch
Confidence 689999999999999999999999988887665
No 421
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=81.52 E-value=7.4 Score=42.27 Aligned_cols=108 Identities=16% Similarity=0.046 Sum_probs=72.7
Q ss_pred HHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhccccc-------chhhhHHHhhHHHhcCCCCCcc
Q 004468 370 ARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWK-------NDAQMAIRDCYNARRIDSSSFR 442 (751)
Q Consensus 370 ~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~-------~d~y~al~d~~~a~~~~~~~~~ 442 (751)
+.-....|. +..|+..+..++...+........-..+..++..+....-. |+.-.|+....+++.++|.+..
T Consensus 385 ~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 463 (537)
T 3fp2_A 385 AEILTDRGD-FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ 463 (537)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHhCC-HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHH
Confidence 344444455 66777777777665544322211111234444444433111 5566788888999999999999
Q ss_pred hHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhh
Q 004468 443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (751)
Q Consensus 443 a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~ 478 (751)
+++.++.++..+|++.+|..+++......|......
T Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 464 AKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 999999999999999999999999999989776543
No 422
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=81.26 E-value=7.1 Score=38.89 Aligned_cols=101 Identities=15% Similarity=0.026 Sum_probs=78.5
Q ss_pred HHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHH
Q 004468 366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHL 445 (751)
Q Consensus 366 l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~ 445 (751)
+...+...+..|. +..|+..+..++...+.. ...+...+..+...+ +.-.|+....+++.++|.+..++.
T Consensus 24 ~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~ 93 (327)
T 3cv0_A 24 PMEEGLSMLKLAN-LAEAALAFEAVCQAAPER------EEAWRSLGLTQAENE---KDGLAIIALNHARMLDPKDIAVHA 93 (327)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCcCCHHHHH
Confidence 4456666677777 889999999999876543 234555666665543 345678888889999999999999
Q ss_pred HHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 446 YMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 446 ~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
.++.++...+++.+|..++.......|....
T Consensus 94 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 124 (327)
T 3cv0_A 94 ALAVSHTNEHNANAALASLRAWLLSQPQYEQ 124 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSTTTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCccHH
Confidence 9999999999999999999888877776543
No 423
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=81.16 E-value=11 Score=37.57 Aligned_cols=101 Identities=14% Similarity=0.066 Sum_probs=59.0
Q ss_pred HHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchH
Q 004468 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAH 444 (751)
Q Consensus 365 ~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~ 444 (751)
.+...+...+..|. |..|+..+..++...+.... .+...+..+... |+.-.|+....+++..+|.+..++
T Consensus 24 ~~~~~a~~~~~~g~-~~~A~~~~~~~l~~~p~~~~------~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~ 93 (330)
T 3hym_B 24 VVVSLAERHYYNCD-FKMCYKLTSVVMEKDPFHAS------CLPVHIGTLVEL---NKANELFYLSHKLVDLYPSNPVSW 93 (330)
T ss_dssp THHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCTT------THHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCChh------hHHHHHHHHHHh---hhHHHHHHHHHHHHHhCcCCHHHH
Confidence 34455666666666 77888888887776655421 222223333222 233445555666666666666666
Q ss_pred HHHHHHHHHhc-chHHHHHHHHHhcccCCCCh
Q 004468 445 LYMSEALEQLC-KYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 445 ~~~~~~l~~l~-~~~~a~~~~~~~~~~~p~~~ 475 (751)
+.++.++...+ ++.+|..++.......|...
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 125 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKTYG 125 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCT
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCccH
Confidence 66666666666 66666666666666555543
No 424
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=81.06 E-value=15 Score=35.01 Aligned_cols=105 Identities=14% Similarity=0.017 Sum_probs=72.6
Q ss_pred HHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcch
Q 004468 364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRA 443 (751)
Q Consensus 364 ~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a 443 (751)
..+...+.-....|. +..++..+..++. .+. .+ .....+.+.+..+... |+.-.|+....+++.++|....+
T Consensus 106 ~~~~~la~~~~~~g~-~~~A~~~~~~~~~-~~~--~~-~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~ 177 (252)
T 2ho1_A 106 RVLNNYGGFLYEQKR-YEEAYQRLLEASQ-DTL--YP-ERSRVFENLGLVSLQM---KKPAQAKEYFEKSLRLNRNQPSV 177 (252)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHTT-CTT--CT-THHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCSCCHHH
T ss_pred HHHHHHHHHHHHHhH-HHHHHHHHHHHHh-Ccc--Cc-ccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCcccHHH
Confidence 334445555556666 7788888888887 111 11 1123555666666554 34556777778888888888888
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 444 HLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 444 ~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
++.++.++..++++.+|..++.......|....
T Consensus 178 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 210 (252)
T 2ho1_A 178 ALEMADLLYKEREYVPARQYYDLFAQGGGQNAR 210 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence 888999999999999999888888877776543
No 425
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=80.91 E-value=34 Score=35.29 Aligned_cols=79 Identities=10% Similarity=0.200 Sum_probs=44.7
Q ss_pred cceEEEEEecCCCCc-EEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecC---CCCEEEEEeC-
Q 004468 94 ANVFCTKFVPETSDE-LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG---NPHVVWSASE- 168 (751)
Q Consensus 94 ~~V~~v~fsp~s~~~-~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~---~~~~l~s~s~- 168 (751)
.....++|.|+ |+ ++++ ...+.|++++........+. .....+.........|+|+|+ ++.++++-+.
T Consensus 18 ~~P~~i~~~pd--G~~l~V~-e~~G~i~~~~~~g~~~~~~~----~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~ 90 (353)
T 2g8s_A 18 DHPWALAFLPD--NHGMLIT-LRGGELRHWQAGKGLSAPLS----GVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEV 90 (353)
T ss_dssp SSEEEEEECST--TCCEEEE-ETTTEEEEEETTTEECCCCB----SCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEE
T ss_pred CCcEEEEEcCC--CCEEEEE-eCCceEEEEeCCCceeeEec----CCcccccCCCCCceeEEECCCCCCCCEEEEEEeCC
Confidence 45689999999 77 5554 56799999985321000000 000111122345688999995 5666666443
Q ss_pred ------CCcEEEEecCC
Q 004468 169 ------DGTLRQHDFRQ 179 (751)
Q Consensus 169 ------Dg~I~iwDlr~ 179 (751)
...|..|++..
T Consensus 91 ~~~g~~~~~v~r~~~~~ 107 (353)
T 2g8s_A 91 GDDGKAGTAVGYGRLSD 107 (353)
T ss_dssp CSSSCEEEEEEEEEECT
T ss_pred CCCCCceeEEEEEEECC
Confidence 22455566543
No 426
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=80.89 E-value=14 Score=34.11 Aligned_cols=96 Identities=11% Similarity=0.021 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcch
Q 004468 364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRA 443 (751)
Q Consensus 364 ~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a 443 (751)
..+...+......|. +..++..+..++...+.. ...+...+..+... |+.-.|+....+++.++|....+
T Consensus 9 ~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~ 78 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQD-YRQATASIEDALKSDPKN------ELAWLVRAEIYQYL---KVNDKAQESFRQALSIKPDSAEI 78 (225)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHhh-HHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCChHH
Confidence 334444555555565 667777777777655433 22444455554433 23445666666777777777777
Q ss_pred HHHHHHHHHHh-cchHHHHHHHHHhcc
Q 004468 444 HLYMSEALEQL-CKYKEALDFAIAAQC 469 (751)
Q Consensus 444 ~~~~~~~l~~l-~~~~~a~~~~~~~~~ 469 (751)
+..++.++... +++.+|..++.....
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 79 NNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 77777777777 777777777766655
No 427
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=80.51 E-value=1.9 Score=37.22 Aligned_cols=52 Identities=17% Similarity=0.081 Sum_probs=45.2
Q ss_pred hhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004468 422 DAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPS 473 (751)
Q Consensus 422 d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~ 473 (751)
+.-.|+....+|+.++|.+..++..++.++..++++.+|+.+........|.
T Consensus 23 ~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~ 74 (127)
T 4gcn_A 23 DFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE 74 (127)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc
Confidence 3456788888999999999999999999999999999999988877665553
No 428
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=80.33 E-value=18 Score=34.86 Aligned_cols=101 Identities=15% Similarity=0.020 Sum_probs=75.6
Q ss_pred HHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcc---
Q 004468 366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR--- 442 (751)
Q Consensus 366 l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~--- 442 (751)
+...+...+..|+ +..|+..+.+++...+.. ...+..++..+...+ +.-.|+..+.+++. .+.+..
T Consensus 6 ~~~~a~~~~~~~~-~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~-~~~~~~~~~ 74 (272)
T 3u4t_A 6 EFRYADFLFKNNN-YAEAIEVFNKLEAKKYNS------PYIYNRRAVCYYELA---KYDLAQKDIETYFS-KVNATKAKS 74 (272)
T ss_dssp HHHHHHHHHTTTC-HHHHHHHHHHHHHTTCCC------STTHHHHHHHHHHTT---CHHHHHHHHHHHHT-TSCTTTCCH
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHh---hHHHHHHHHHHHHh-ccCchhHHH
Confidence 3455666677777 889999999999877654 224566676666544 35567888888888 444443
Q ss_pred -hHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468 443 -AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (751)
Q Consensus 443 -a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~ 477 (751)
+++.++.++..++++.+|+.++.......|.....
T Consensus 75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 110 (272)
T 3u4t_A 75 ADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDM 110 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHH
Confidence 48899999999999999999999998888876543
No 429
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=80.33 E-value=11 Score=31.07 Aligned_cols=86 Identities=24% Similarity=0.202 Sum_probs=45.6
Q ss_pred hhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHH
Q 004468 380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE 459 (751)
Q Consensus 380 ~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~ 459 (751)
+..++..+..++...+.. ...+...+..+... ++.-.|+.-..+++.+.|....+++.++.++...+++.+
T Consensus 17 ~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 87 (136)
T 2fo7_A 17 YDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQ---GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 87 (136)
T ss_dssp HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHcCCcc------hhHHHHHHHHHHHh---cCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHH
Confidence 555556666555543221 12233333333322 233345555555666666666666666666666666666
Q ss_pred HHHHHHHhcccCCCC
Q 004468 460 ALDFAIAAQCLDPSN 474 (751)
Q Consensus 460 a~~~~~~~~~~~p~~ 474 (751)
|..++.......|..
T Consensus 88 A~~~~~~~~~~~~~~ 102 (136)
T 2fo7_A 88 AIEYYQKALELDPRS 102 (136)
T ss_dssp HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCC
Confidence 666666655555543
No 430
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=80.23 E-value=56 Score=33.51 Aligned_cols=63 Identities=8% Similarity=0.041 Sum_probs=37.5
Q ss_pred CCcEEEEEECCC----CCEEEEEeCC-----CcEEEEeCCCCe-----EEE-Eec--ccCCcceEEEEEecCCCCcEEEE
Q 004468 50 QGCVNAISWNSK----GSLLISGSDD-----THINVWSYSSRK-----LLH-SIE--TGHSANVFCTKFVPETSDELVVS 112 (751)
Q Consensus 50 ~~~V~~l~~s~d----g~~LaSgs~D-----g~I~IWd~~~~~-----~~~-~l~--~~h~~~V~~v~fsp~s~~~~l~s 112 (751)
....+.|+|+|+ +.+.++-... ..|..|+...+. .+. .+. .+.......++|.|+ |.++++
T Consensus 74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pd--G~Lyv~ 151 (352)
T 2ism_A 74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPD--GMLYVT 151 (352)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTT--SCEEEE
T ss_pred CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCC--CCEEEE
Confidence 456889999998 4555544432 568888876431 222 232 111123468999998 776666
Q ss_pred EE
Q 004468 113 GA 114 (751)
Q Consensus 113 gs 114 (751)
.+
T Consensus 152 ~G 153 (352)
T 2ism_A 152 TG 153 (352)
T ss_dssp CC
T ss_pred EC
Confidence 43
No 431
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=80.22 E-value=6.7 Score=39.12 Aligned_cols=99 Identities=13% Similarity=0.048 Sum_probs=73.3
Q ss_pred HHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchH
Q 004468 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAH 444 (751)
Q Consensus 365 ~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~ 444 (751)
.+...+......|. +..++..+..++...+.. ...+.+.+..+... |+.-.|+....+++.++|....++
T Consensus 174 ~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~ 243 (327)
T 3cv0_A 174 LHASLGVLYNLSNN-YDSAAANLRRAVELRPDD------AQLWNKLGATLANG---NRPQEALDAYNRALDINPGYVRVM 243 (327)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCHHHH
Confidence 33444455555566 778888888888765443 23555666666653 345667888888899999999999
Q ss_pred HHHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004468 445 LYMSEALEQLCKYKEALDFAIAAQCLDPS 473 (751)
Q Consensus 445 ~~~~~~l~~l~~~~~a~~~~~~~~~~~p~ 473 (751)
+.++.++..+|++.+|..+++......|.
T Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 244 YNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 99999999999999999998888777776
No 432
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=80.14 E-value=57 Score=33.54 Aligned_cols=111 Identities=13% Similarity=0.107 Sum_probs=57.3
Q ss_pred CCcEEEEEECCC----CCEEEEEeC---C----CcEEEEeCCCC-------eEE-EEecccCCcceEEEEEecCCCCcEE
Q 004468 50 QGCVNAISWNSK----GSLLISGSD---D----THINVWSYSSR-------KLL-HSIETGHSANVFCTKFVPETSDELV 110 (751)
Q Consensus 50 ~~~V~~l~~s~d----g~~LaSgs~---D----g~I~IWd~~~~-------~~~-~~l~~~h~~~V~~v~fsp~s~~~~l 110 (751)
.+....|+|+|+ +.+.++-+. + ..|..|+.... +.+ ..+..+.......++|.|+ |.++
T Consensus 72 ~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pD--G~Ly 149 (354)
T 3a9g_A 72 EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPD--GMLY 149 (354)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTT--SCEE
T ss_pred CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCC--CcEE
Confidence 356889999997 555555442 3 56777776543 111 1121111123467999998 7777
Q ss_pred EEEECC-------------CcEEEEECCCCCCCCCCCCCC-CCceeecccCCceeEEEEecCCCCEEEEE
Q 004468 111 VSGAGD-------------AEVRLFNLSRFSGRGLDDNAI-TPSALYQCHTRRVKKLAVEVGNPHVVWSA 166 (751)
Q Consensus 111 ~sgs~D-------------g~V~vwd~~~~~~~~~~~~~~-~~~~~~~~h~~~V~~l~~sp~~~~~l~s~ 166 (751)
++.+.. +.|.-.+.. +.....+.. .....-.+|.. ...++|+|+.+.++++-
T Consensus 150 vt~G~~~~~~~~~d~~~~~G~I~ri~~d---G~~p~~npf~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d 215 (354)
T 3a9g_A 150 ITTGDAADPRLAQDLSSLAGKILRVDEE---GRPPADNPFPNSPIWSYGHRN-PQGIDWHRASGVMVATE 215 (354)
T ss_dssp EECCCTTCGGGGTCTTCCSSEEEEECTT---SCCCTTSSSTTCCEEEECCSC-CCEEEECTTTCCEEEEE
T ss_pred EEECCCCCCccccCCCCCCeEEEEEcCC---CCCCCCCCCCCCcEEEEccCC-cceEEEeCCCCCEEEEe
Confidence 764321 344444443 111101100 01111234433 46899999666666554
No 433
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=79.79 E-value=9.2 Score=29.54 Aligned_cols=81 Identities=17% Similarity=0.115 Sum_probs=59.6
Q ss_pred HHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchH
Q 004468 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAH 444 (751)
Q Consensus 365 ~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~ 444 (751)
.+...+......+. +..|+..+..++...+.. ...+.+.+..+...+ +.-.|+....+++.++|.+..++
T Consensus 11 ~~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~ 80 (91)
T 1na3_A 11 AWYNLGNAYYKQGD-YDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQG---DYDEAIEYYQKALELDPNNAEAK 80 (91)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHh---hHHHHHHHHHHHHhcCCCCHHHH
Confidence 34445556666666 889999999999876543 235566677766543 45567888889999999999999
Q ss_pred HHHHHHHHHhc
Q 004468 445 LYMSEALEQLC 455 (751)
Q Consensus 445 ~~~~~~l~~l~ 455 (751)
..++.++..+|
T Consensus 81 ~~l~~~~~~~g 91 (91)
T 1na3_A 81 QNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99988887654
No 434
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=79.77 E-value=6.5 Score=42.51 Aligned_cols=85 Identities=16% Similarity=0.116 Sum_probs=64.4
Q ss_pred HHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHH
Q 004468 368 EIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYM 447 (751)
Q Consensus 368 ~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~ 447 (751)
..+...+..++ |..|+..|+.+|...+.. ...|.+++.+++..+ +.-.|+.+..+|+.++|.+..++..+
T Consensus 322 nla~~~~~~g~-~~~A~~~~~~al~~~p~~------~~a~~~~g~a~~~~g---~~~~A~~~~~~al~l~P~~~~a~~~l 391 (457)
T 1kt0_A 322 NLAMCYLKLRE-YTKAVECCDKALGLDSAN------EKGLYRRGEAQLLMN---EFESAKGDFEKVLEVNPQNKAARLQI 391 (457)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTC----CHHHHH
T ss_pred HHHHHHHHhcC-HHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 44444555566 889999999999876554 346778888888764 45678999999999999999999999
Q ss_pred HHHHHHhcchHHHHH
Q 004468 448 SEALEQLCKYKEALD 462 (751)
Q Consensus 448 ~~~l~~l~~~~~a~~ 462 (751)
..++..++++.++..
T Consensus 392 ~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 392 SMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998887764
No 435
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=79.59 E-value=4.8 Score=33.39 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=45.2
Q ss_pred HHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 426 AIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 426 al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
|+....+++.++|.+..+++.++.++...+++.+|..++.......|....
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 54 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSV 54 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHH
Confidence 455567889999999999999999999999999999999999888887653
No 436
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=79.53 E-value=3.2 Score=36.84 Aligned_cols=67 Identities=13% Similarity=0.004 Sum_probs=55.2
Q ss_pred HhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 407 LCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 407 ~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
+.+.+..+... |+.-.|+....+++.++|.+..+++.++.++..++++.+|+.++.......|....
T Consensus 24 ~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 90 (148)
T 2vgx_A 24 LYSLAFNQYQS---GXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR 90 (148)
T ss_dssp HHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH
T ss_pred HHHHHHHHHHc---CChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence 34555555544 34556788888999999999999999999999999999999999999888887654
No 437
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=79.52 E-value=7.5 Score=38.99 Aligned_cols=89 Identities=13% Similarity=-0.057 Sum_probs=63.7
Q ss_pred hhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHH
Q 004468 380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE 459 (751)
Q Consensus 380 ~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~ 459 (751)
+..|+..|.+++...+.. ..++.++|.+++..+- .-.|.....+++.++|.++.+++.++.++..+|+..+
T Consensus 182 ~~eA~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~---~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~e 252 (291)
T 3mkr_A 182 LQDAYYIFQEMADKCSPT------LLLLNGQAACHMAQGR---WEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPE 252 (291)
T ss_dssp HHHHHHHHHHHHHHSCCC------HHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHH
Confidence 666777777777765543 3456677777766553 3456777778888888888888888888888888876
Q ss_pred H-HHHHHHhcccCCCChhh
Q 004468 460 A-LDFAIAAQCLDPSNSVM 477 (751)
Q Consensus 460 a-~~~~~~~~~~~p~~~~~ 477 (751)
+ ..+..+.....|.+...
T Consensus 253 aa~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 253 VTNRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp HHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhCCCChHH
Confidence 4 46777777777876543
No 438
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=79.23 E-value=17 Score=29.95 Aligned_cols=84 Identities=25% Similarity=0.204 Sum_probs=58.0
Q ss_pred hhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHH
Q 004468 380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE 459 (751)
Q Consensus 380 ~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~ 459 (751)
+..++..+..++...+.. ...+...+..+... ++.-.|+.-...++.+.|....+++.++.++...+++.+
T Consensus 51 ~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 121 (136)
T 2fo7_A 51 YDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQ---GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 121 (136)
T ss_dssp HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHCCCc------hHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHH
Confidence 666677777777654332 22344555555443 345567777778888889888999999999999999999
Q ss_pred HHHHHHHhcccCC
Q 004468 460 ALDFAIAAQCLDP 472 (751)
Q Consensus 460 a~~~~~~~~~~~p 472 (751)
|..++.......|
T Consensus 122 A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 122 AIEYYQKALELDP 134 (136)
T ss_dssp HHHHHHHHHHHST
T ss_pred HHHHHHHHHccCC
Confidence 9888776554444
No 439
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=79.11 E-value=3.5 Score=36.03 Aligned_cols=66 Identities=14% Similarity=0.002 Sum_probs=54.5
Q ss_pred hHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 408 CIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 408 ~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
...+..++.. |+.-.|+.....++.++|.+..+++.++.++..++++.+|+.++.......|....
T Consensus 22 ~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 87 (142)
T 2xcb_A 22 YALGFNQYQA---GKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR 87 (142)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHH---ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH
Confidence 3445555543 34556788888999999999999999999999999999999999999888887654
No 440
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=79.11 E-value=19 Score=34.23 Aligned_cols=48 Identities=15% Similarity=0.072 Sum_probs=22.6
Q ss_pred HHHhhHHHhc--CCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004468 426 AIRDCYNARR--IDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPS 473 (751)
Q Consensus 426 al~d~~~a~~--~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~ 473 (751)
|+.-..+++. .+|....+++.++.++...+++.+|..++.......|.
T Consensus 124 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 173 (252)
T 2ho1_A 124 AYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN 173 (252)
T ss_dssp HHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 3333444444 44444445555555555555555555554444444443
No 441
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=78.65 E-value=3.4 Score=37.07 Aligned_cols=68 Identities=19% Similarity=0.040 Sum_probs=55.5
Q ss_pred hHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 406 CLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 406 ~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
.+..++..++.. ++.-.|+....+++.++|.+..+++.++.++..++++.+|+.++.......|....
T Consensus 13 ~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 80 (164)
T 3sz7_A 13 KLKSEGNAAMAR---KEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK 80 (164)
T ss_dssp HHHHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 344555555543 33556888889999999999999999999999999999999999999988887653
No 442
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=78.32 E-value=8 Score=34.47 Aligned_cols=97 Identities=16% Similarity=0.044 Sum_probs=70.2
Q ss_pred HHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHH
Q 004468 367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLY 446 (751)
Q Consensus 367 ~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~ 446 (751)
...+......++ +..++..+..++...+.. ...+...+..+... |+.-.|+.....++.+.|....++..
T Consensus 80 ~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~ 149 (186)
T 3as5_A 80 TVLGLTYVQVQK-YDLAVPLLIKVAEANPIN------FNVRFRLGVALDNL---GRFDEAIDSFKIALGLRPNEGKVHRA 149 (186)
T ss_dssp HHHHHHHHHHTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhcC-HHHHHHHHHHHHhcCcHh------HHHHHHHHHHHHHc---CcHHHHHHHHHHHHhcCccchHHHHH
Confidence 334444455555 778888888888765443 23445556555543 34456777788889999999999999
Q ss_pred HHHHHHHhcchHHHHHHHHHhcccCCC
Q 004468 447 MSEALEQLCKYKEALDFAIAAQCLDPS 473 (751)
Q Consensus 447 ~~~~l~~l~~~~~a~~~~~~~~~~~p~ 473 (751)
++.++...|++.+|..++.......|.
T Consensus 150 la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 150 IAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999888776655553
No 443
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=77.96 E-value=7.6 Score=39.89 Aligned_cols=87 Identities=17% Similarity=0.138 Sum_probs=69.5
Q ss_pred HHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchH
Q 004468 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAH 444 (751)
Q Consensus 365 ~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~ 444 (751)
.+...+...+..++ |..|+..|..+|...+.. ...+.+++.++...+ +.-.|+.+..+++.++|.+..++
T Consensus 198 ~~~nla~~~~~~g~-~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~P~~~~a~ 267 (336)
T 1p5q_A 198 SHLNLAMCHLKLQA-FSAAIESCNKALELDSNN------EKGLSRRGEAHLAVN---DFELARADFQKVLQLYPNNKAAK 267 (336)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHCCCCHHHH
Confidence 33444555556666 889999999999876554 346778888887754 45678999999999999999999
Q ss_pred HHHHHHHHHhcchHHHH
Q 004468 445 LYMSEALEQLCKYKEAL 461 (751)
Q Consensus 445 ~~~~~~l~~l~~~~~a~ 461 (751)
..++.++..++++.+|.
T Consensus 268 ~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 268 TQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998884
No 444
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=77.64 E-value=1.9 Score=36.36 Aligned_cols=55 Identities=13% Similarity=0.076 Sum_probs=47.2
Q ss_pred hhhHHHhhHHHhcC---CCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468 423 AQMAIRDCYNARRI---DSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (751)
Q Consensus 423 ~y~al~d~~~a~~~---~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~ 477 (751)
.-.|+....+++.+ +|.+..+++.++.++..++++.+|+.++++.....|.....
T Consensus 6 ~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 63 (117)
T 3k9i_A 6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63 (117)
T ss_dssp -CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH
Confidence 33566777888898 79999999999999999999999999999999999987543
No 445
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=77.50 E-value=16 Score=39.54 Aligned_cols=119 Identities=13% Similarity=0.076 Sum_probs=63.4
Q ss_pred CcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCe---EEEEec----c----cCCcceEEEEEecC--CCCcEEEEEEC-
Q 004468 51 GCVNAISWNSKGS-LLISGSDDTHINVWSYSSRK---LLHSIE----T----GHSANVFCTKFVPE--TSDELVVSGAG- 115 (751)
Q Consensus 51 ~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~---~~~~l~----~----~h~~~V~~v~fsp~--s~~~~l~sgs~- 115 (751)
...+.|+|.|+|+ .|+.+...|.|++++..... .+..+. . +.......|+|+|+ .++.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4567999999996 45556688999999754221 222221 1 12467899999996 21344444332
Q ss_pred -CC----------cEEEEECCCCCCCCCCCCCCCCceeec--ccCCceeEEEEecCCCCEEEEEeCCC
Q 004468 116 -DA----------EVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASEDG 170 (751)
Q Consensus 116 -Dg----------~V~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~l~s~s~Dg 170 (751)
++ .|.-|.+........+....+.+..+. ........|+|.| ++.++++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd~~ 160 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGDGM 160 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECCTT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEeCCCC
Confidence 11 333355542211111100111122221 1223457899999 668888777654
No 446
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=77.08 E-value=10 Score=42.10 Aligned_cols=104 Identities=9% Similarity=-0.065 Sum_probs=81.2
Q ss_pred chhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCC
Q 004468 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 440 (751)
Q Consensus 361 ~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~ 440 (751)
.....+...+......|+ +..|+..|.+++...+.. ...+.+.+.++...+ +.-.|+....+++.++|.+
T Consensus 55 ~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~ 124 (568)
T 2vsy_A 55 GHPEAVARLGRVRWTQQR-HAEAAVLLQQASDAAPEH------PGIALWLGHALEDAG---QAEAAAAAYTRAHQLLPEE 124 (568)
T ss_dssp TCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTC
T ss_pred CCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC
Confidence 334444555666666677 889999999999876554 345667777776644 4556788888999999999
Q ss_pred cchHHHHHHHHHHh---cchHHHHHHHHHhcccCCCC
Q 004468 441 FRAHLYMSEALEQL---CKYKEALDFAIAAQCLDPSN 474 (751)
Q Consensus 441 ~~a~~~~~~~l~~l---~~~~~a~~~~~~~~~~~p~~ 474 (751)
..++..++.++..+ +++.+|...+++.....|..
T Consensus 125 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 125 PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 99999999999999 99999999998888777764
No 447
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=77.05 E-value=5.1 Score=32.29 Aligned_cols=64 Identities=19% Similarity=0.152 Sum_probs=52.5
Q ss_pred HhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004468 407 LCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPS 473 (751)
Q Consensus 407 ~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~ 473 (751)
+...+..+... ++...|+....+++.++|....+++.++.++..++++.+|..++.......|.
T Consensus 9 ~~~~~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 9 YYLEGVLQYDA---GNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp GGGHHHHHHSS---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHh---hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 34445555443 34556788888999999999999999999999999999999999999888887
No 448
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=77.03 E-value=31 Score=31.64 Aligned_cols=98 Identities=12% Similarity=-0.046 Sum_probs=57.9
Q ss_pred HHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhc--CCCCCcchHHH
Q 004468 369 IARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARR--IDSSSFRAHLY 446 (751)
Q Consensus 369 ~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~--~~~~~~~a~~~ 446 (751)
.+......|. +..++..+..++...+.. ...+.+.+..+... .|+.-.|+.....++. .+|....+++.
T Consensus 48 l~~~~~~~~~-~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 118 (225)
T 2vq2_A 48 RAEIYQYLKV-NDKAQESFRQALSIKPDS------AEINNNYGWFLCGR--LNRPAESMAYFDKALADPTYPTPYIANLN 118 (225)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTT--TCCHHHHHHHHHHHHTSTTCSCHHHHHHH
T ss_pred HHHHHHHcCC-hHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHh--cCcHHHHHHHHHHHHcCcCCcchHHHHHH
Confidence 3344444455 667777777777654332 22444555555443 0234445555666666 55555667777
Q ss_pred HHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468 447 MSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 447 ~~~~l~~l~~~~~a~~~~~~~~~~~p~~~ 475 (751)
++.++...+++.+|..++.......|...
T Consensus 119 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 147 (225)
T 2vq2_A 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFP 147 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 77777777777777777777666666543
No 449
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=76.34 E-value=73 Score=32.68 Aligned_cols=112 Identities=12% Similarity=0.094 Sum_probs=60.3
Q ss_pred CcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEe------cccCCcceEEEEEecC--CCCcEEEEEEC------
Q 004468 51 GCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSI------ETGHSANVFCTKFVPE--TSDELVVSGAG------ 115 (751)
Q Consensus 51 ~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~~~~l------~~~h~~~V~~v~fsp~--s~~~~l~sgs~------ 115 (751)
...+.|+|.|+|+ ++++ ...|.|++++.. +.....+ .....+....++|+|+ .++.+.++-..
T Consensus 18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCcEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 3568999999999 6654 567999999854 3322111 1122356789999995 11555555433
Q ss_pred -CCcEEEEECCCCCCCCCCCCCCCCc-eeec---ccCCceeEEEEecCCCCEEEEEeC
Q 004468 116 -DAEVRLFNLSRFSGRGLDDNAITPS-ALYQ---CHTRRVKKLAVEVGNPHVVWSASE 168 (751)
Q Consensus 116 -Dg~V~vwd~~~~~~~~~~~~~~~~~-~~~~---~h~~~V~~l~~sp~~~~~l~s~s~ 168 (751)
...|..|++........ ..+.+ ..+. ........|+|.| ++.++++.+.
T Consensus 96 ~~~~v~r~~~~~~~~~~~---~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd 149 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVT---DFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGE 149 (353)
T ss_dssp EEEEEEEEEECTTSSBEE---EEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECC
T ss_pred ceeEEEEEEECCCCCCCC---ceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECC
Confidence 23465566543211100 00001 1111 1112235799999 5577766554
No 450
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=75.89 E-value=1.9 Score=39.31 Aligned_cols=55 Identities=25% Similarity=0.308 Sum_probs=46.3
Q ss_pred chhhhHHHhhHHHhcCCCC-------Ccc-----hHHHHHHHHHHhcchHHHHHHHHHhccc-------CCCCh
Q 004468 421 NDAQMAIRDCYNARRIDSS-------SFR-----AHLYMSEALEQLCKYKEALDFAIAAQCL-------DPSNS 475 (751)
Q Consensus 421 ~d~y~al~d~~~a~~~~~~-------~~~-----a~~~~~~~l~~l~~~~~a~~~~~~~~~~-------~p~~~ 475 (751)
|+.-.|+..+.+|++++|. +.. +|..++.||..+|++.+|+.+....... .|.+.
T Consensus 25 g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~ 98 (159)
T 2hr2_A 25 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 98 (159)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred CCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchH
Confidence 3455688889999999998 333 8999999999999999999999988888 88643
No 451
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=75.63 E-value=8.8 Score=33.69 Aligned_cols=94 Identities=13% Similarity=0.032 Sum_probs=67.5
Q ss_pred HHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcch
Q 004468 364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRA 443 (751)
Q Consensus 364 ~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a 443 (751)
..+...+......+. +..|+..+..++...+.. ...+.+.+..+...+ +.-.|+....+++.++|.+..+
T Consensus 48 ~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~~~~------~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~ 117 (166)
T 1a17_A 48 IYYGNRSLAYLRTEC-YGYALGDATRAIELDKKY------IKGYYRRAASNMALG---KFRAALRDYETVVKVKPHDKDA 117 (166)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhCCCCHHH
Confidence 334445555555666 888999999999876543 335666676666543 4556888888999999999988
Q ss_pred HHHHHHH--HHHhcchHHHHHHHHHh
Q 004468 444 HLYMSEA--LEQLCKYKEALDFAIAA 467 (751)
Q Consensus 444 ~~~~~~~--l~~l~~~~~a~~~~~~~ 467 (751)
+..+..+ +...+++.+|+.+....
T Consensus 118 ~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 118 KMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccch
Confidence 8666555 77889999998776544
No 452
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=75.23 E-value=12 Score=41.42 Aligned_cols=103 Identities=8% Similarity=-0.065 Sum_probs=74.3
Q ss_pred HHHhhhcCCChhHHHHHhHHHHhcccC-CCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHH
Q 004468 370 ARNSLEEGKHPYYGIEACNEVLEGHLS-GIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMS 448 (751)
Q Consensus 370 ~~~~~~~g~~~~~ai~~~~~~i~~~~~-~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~ 448 (751)
+......|. +..|+..+.+++...+. ...|......+.+.+.++.+. |+.-.|+....+++.++|.+..++..++
T Consensus 482 ~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 557 (597)
T 2xpi_A 482 GVVAFNKSD-MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL---KMYDAAIDALNQGLLLSTNDANVHTAIA 557 (597)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHhCC-HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 333344455 66777777777765432 112222234566666666654 4466788888889999999999999999
Q ss_pred HHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 449 EALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 449 ~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
.++...|++.+|..++++.....|....
T Consensus 558 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 585 (597)
T 2xpi_A 558 LVYLHKKIPGLAITHLHESLAISPNEIM 585 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCChH
Confidence 9999999999999999999988887654
No 453
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=74.49 E-value=11 Score=37.44 Aligned_cols=96 Identities=13% Similarity=-0.095 Sum_probs=67.0
Q ss_pred CCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcc-------hHHHHHH
Q 004468 377 GKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR-------AHLYMSE 449 (751)
Q Consensus 377 g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~-------a~~~~~~ 449 (751)
|. +..|+..|.+++...+....+.....++.+.+..+...+ +.-.|+....+++.+.|.... +++.++.
T Consensus 132 g~-~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 207 (292)
T 1qqe_A 132 HD-YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG---QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGL 207 (292)
T ss_dssp CC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHH
T ss_pred cC-HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHH
Confidence 55 888999999998866543222111235666666666653 455688888899998887654 4677889
Q ss_pred HHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 450 ALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 450 ~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
|+..+|++.+|..+.+......|....
T Consensus 208 ~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 208 CQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 999999999999999999988886553
No 454
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=74.20 E-value=6.5 Score=33.03 Aligned_cols=53 Identities=9% Similarity=-0.013 Sum_probs=46.5
Q ss_pred hhhHHHhhHHHhcCCCCCc---chHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468 423 AQMAIRDCYNARRIDSSSF---RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 423 ~y~al~d~~~a~~~~~~~~---~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~ 475 (751)
.-.|+.....++..+|.+. .+++.++.++..++++.+|..++..+....|...
T Consensus 18 ~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (129)
T 2xev_A 18 YDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD 73 (129)
T ss_dssp HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc
Confidence 4456777788888999998 7999999999999999999999999999889763
No 455
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=72.82 E-value=6.5 Score=33.43 Aligned_cols=68 Identities=13% Similarity=-0.114 Sum_probs=54.0
Q ss_pred hHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 406 CLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 406 ~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
.+...+..++..+ +.-.|+.....++.++|.+..+++.++.++..++++.+|..++.......|....
T Consensus 11 ~~~~~g~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 78 (137)
T 3q49_B 11 ELKEQGNRLFVGR---KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK 78 (137)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHhC---cHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHH
Confidence 3444455554432 3446777788899999999999999999999999999999999999888887553
No 456
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=71.83 E-value=6.2 Score=42.99 Aligned_cols=94 Identities=13% Similarity=0.041 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCc
Q 004468 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF 441 (751)
Q Consensus 362 ~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~ 441 (751)
....+...+......++ |..|+..|..++...+.. ...+.++|.++...+ +.-.|+....+++.++|.+.
T Consensus 39 ~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~------~~~~~~lg~~~~~~g---~~~eA~~~~~~al~~~p~~~ 108 (477)
T 1wao_1 39 NAIYYGNRSLAYLRTEC-YGYALGDATRAIELDKKY------IKGYYRRAASNMALG---KFRAALRDYETVVKVKPHDK 108 (477)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHSCTTC------HHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHSTTCT
T ss_pred cHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCH
Confidence 34444555666666676 889999999999876543 346678888877654 35568888899999999999
Q ss_pred chHHHHHHH--HHHhcchHHHHHHHH
Q 004468 442 RAHLYMSEA--LEQLCKYKEALDFAI 465 (751)
Q Consensus 442 ~a~~~~~~~--l~~l~~~~~a~~~~~ 465 (751)
.++..+..+ +...+++.+|+.+.+
T Consensus 109 ~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 109 DAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp THHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999888 888899999998887
No 457
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=71.67 E-value=17 Score=34.91 Aligned_cols=92 Identities=17% Similarity=0.083 Sum_probs=70.3
Q ss_pred hhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHH
Q 004468 380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE 459 (751)
Q Consensus 380 ~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~ 459 (751)
+..++..+.+++...... +......+...+..+...+ +.-.|+....+++.++|.+..+++.++.++..++++.+
T Consensus 21 ~~~A~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 21 QEVILARMEQILASRALT--DDERAQLLYERGVLYDSLG---LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp HHHHHHHHHHHHTSSCCC--HHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhccccc--CchhHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 567788888888753211 1222335566666666543 45568888899999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCChh
Q 004468 460 ALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 460 a~~~~~~~~~~~p~~~~ 476 (751)
|..++.......|....
T Consensus 96 A~~~~~~al~~~~~~~~ 112 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNY 112 (275)
T ss_dssp HHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHhcCccccH
Confidence 99999999888887653
No 458
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=70.16 E-value=9.8 Score=30.79 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=47.5
Q ss_pred hhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468 422 DAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 422 d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~ 475 (751)
+.-.|+.-..+++.++|.+..+++.++.++..++++.+|..++.......|...
T Consensus 19 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 72 (118)
T 1elw_A 19 NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG 72 (118)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH
Confidence 455677778888999999999999999999999999999999999888888654
No 459
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=69.45 E-value=12 Score=38.96 Aligned_cols=83 Identities=19% Similarity=0.138 Sum_probs=64.1
Q ss_pred HHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHH
Q 004468 369 IARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMS 448 (751)
Q Consensus 369 ~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~ 448 (751)
.+...+..++ |..|+..|..++...+.. ...+.+++.++...+ +.-.|+.+..+|+.++|.+..++..+.
T Consensus 279 la~~~~~~g~-~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g---~~~eA~~~l~~Al~l~P~~~~~~~~l~ 348 (370)
T 1ihg_A 279 IGACKLKMSD-WQGAVDSCLEALEIDPSN------TKALYRRAQGWQGLK---EYDQALADLKKAQEIAPEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHTTCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHhccC-HHHHHHHHHHHHHhCchh------HHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3444445555 888999999999865443 346778888887654 456789999999999999999999999
Q ss_pred HHHHHhcchHHHH
Q 004468 449 EALEQLCKYKEAL 461 (751)
Q Consensus 449 ~~l~~l~~~~~a~ 461 (751)
.++..++++.++.
T Consensus 349 ~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 349 KVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998777664
No 460
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=68.91 E-value=11 Score=34.00 Aligned_cols=88 Identities=13% Similarity=0.099 Sum_probs=66.6
Q ss_pred hhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHH-HHHhcch-
Q 004468 380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEA-LEQLCKY- 457 (751)
Q Consensus 380 ~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~-l~~l~~~- 457 (751)
+..++..+..++...+.. ...+...+..+... ++.-.|+....+++.++|.+..+++.++.+ +...+++
T Consensus 26 ~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 26 PEAQLQALQDKIRANPQN------SEQWALLGEYYLWQ---NDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp -CCCCHHHHHHHHHCCSC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence 556777788877766543 23455556665543 345567888888999999999999999999 7789998
Q ss_pred -HHHHHHHHHhcccCCCChh
Q 004468 458 -KEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 458 -~~a~~~~~~~~~~~p~~~~ 476 (751)
.+|..++.......|....
T Consensus 97 ~~~A~~~~~~al~~~p~~~~ 116 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEIT 116 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHH
T ss_pred hHHHHHHHHHHHHhCCCcHH
Confidence 9999999999888887653
No 461
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=67.67 E-value=25 Score=34.99 Aligned_cols=100 Identities=10% Similarity=-0.098 Sum_probs=68.1
Q ss_pred HHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHH--hhcccccchhhhHHHhhHHHhcCCCCCcchHH
Q 004468 368 EIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAAL--LLKRKWKNDAQMAIRDCYNARRIDSSSFRAHL 445 (751)
Q Consensus 368 ~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~--~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~ 445 (751)
..+.-....|. +..|+..+..++...+.. ...+-+.+ .+.. -.++.-.|+.-...++..+|.++.+++
T Consensus 135 ~l~~~~~~~g~-~~~A~~~l~~~~~~~p~~--------~~~~l~~a~~~l~~-~~~~~~eA~~~~~~~l~~~p~~~~~~~ 204 (291)
T 3mkr_A 135 MTVQILLKLDR-LDLARKELKKMQDQDEDA--------TLTQLATAWVSLAA-GGEKLQDAYYIFQEMADKCSPTLLLLN 204 (291)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHH-CTTHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHCCC-HHHHHHHHHHHHhhCcCc--------HHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 33444444555 667777888877765432 11111111 1110 124455667767788889999999999
Q ss_pred HHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468 446 YMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (751)
Q Consensus 446 ~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~ 477 (751)
.++.++..+|++.+|...+++.....|.+...
T Consensus 205 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 205 GQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999888977643
No 462
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=67.44 E-value=10 Score=31.67 Aligned_cols=68 Identities=12% Similarity=0.091 Sum_probs=53.9
Q ss_pred hHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 406 CLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 406 ~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
.+...+..+...+ +.-.|+....+++.++|.+..+++.++.++..++++.+|..+++......|....
T Consensus 18 ~~~~~~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 85 (133)
T 2lni_A 18 MVKNKGNECFQKG---DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK 85 (133)
T ss_dssp HHHHHHHHHHHTT---CSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH
Confidence 3444555554433 3446777888899999999999999999999999999999999998888887543
No 463
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=66.72 E-value=9.6 Score=38.03 Aligned_cols=105 Identities=11% Similarity=-0.049 Sum_probs=71.4
Q ss_pred HHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCC------c
Q 004468 368 EIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS------F 441 (751)
Q Consensus 368 ~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~------~ 441 (751)
..+.-....|. +..|+..|..++........+..-...+.+.+.++... -|+.-.|+....+|+.+.|.. .
T Consensus 82 ~lg~~~~~~g~-~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~--lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 82 EAYKCFKSGGN-SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND--LHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 33444444555 77888888888876543322211123455666665542 144567888888888887754 4
Q ss_pred chHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 442 ~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~ 475 (751)
.++..++.++..+|++.+|+.+++......|...
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 192 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR 192 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence 5678889999999999999999999888877654
No 464
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=66.30 E-value=38 Score=34.19 Aligned_cols=109 Identities=10% Similarity=0.026 Sum_probs=82.3
Q ss_pred cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCC
Q 004468 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS 439 (751)
Q Consensus 360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~ 439 (751)
.+..+.+..........+.....++..+..+|...+.. ...+..|...+...+- .+...++.-+..++.++|.
T Consensus 29 ~~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~------~taWn~R~~~L~~l~~-~~~~eeL~~~~~~L~~nPk 101 (306)
T 3dra_A 29 DEDYKQIMGLLLALMKAEEYSERALHITELGINELASH------YTIWIYRFNILKNLPN-RNLYDELDWCEEIALDNEK 101 (306)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTCTT-SCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHH------HHHHHHHHHHHHHccc-ccHHHHHHHHHHHHHHCcc
Confidence 34455566666666666664457899999999877665 4456667666654331 3467788889999999999
Q ss_pred CcchHHHHHHHH----HHh---cchHHHHHHHHHhcccCCCCh
Q 004468 440 SFRAHLYMSEAL----EQL---CKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 440 ~~~a~~~~~~~l----~~l---~~~~~a~~~~~~~~~~~p~~~ 475 (751)
+..++.+...+| ..+ +.+.+++.+...+....|..-
T Consensus 102 ~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny 144 (306)
T 3dra_A 102 NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNH 144 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999 777 788999999999888888643
No 465
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=66.20 E-value=16 Score=35.10 Aligned_cols=52 Identities=13% Similarity=0.131 Sum_probs=40.8
Q ss_pred eeeccCCCCEEEEccCCCcEEEEecCC-------------------eeeeeeccCCCceEEEEecCCceEEecCC
Q 004468 632 ASFLGQRGDYIASGSDDGRWFIWEKQT-------------------VVNCVQCHPFDCVVATSGIDNTIKIWTPS 687 (751)
Q Consensus 632 ~~~~~~~~~~v~sgs~dg~~~iW~~~~-------------------~v~~v~~~p~~~~las~~~d~~v~~W~~~ 687 (751)
+.||.|+|.+.++ .||.||=|+..+ .+.+|.+.|++.+.|.. |+.++=+.|.
T Consensus 92 a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P 162 (236)
T 1tl2_A 92 FLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPP 162 (236)
T ss_dssp EEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCC
T ss_pred EEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCC
Confidence 5588999999998 459999999744 67999999999988777 6655445444
No 466
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=65.59 E-value=24 Score=27.77 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=50.0
Q ss_pred HHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhh-hHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHH
Q 004468 369 IARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHE-CLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHL 445 (751)
Q Consensus 369 ~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~-~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~ 445 (751)
.+...+..|. +..|+..+..++...+.. .. .+.+++.++...+ +.-.|+....+++.++|.+..++.
T Consensus 6 ~a~~~~~~~~-~~~A~~~~~~al~~~p~~------~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~ 73 (99)
T 2kc7_A 6 TIKELINQGD-IENALQALEEFLQTEPVG------KDEAYYLMGNAYRKLG---DWQKALNNYQSAIELNPDSPALQA 73 (99)
T ss_dssp HHHHHHHHTC-HHHHHHHHHHHHHHCSST------HHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HHHHHHHcCC-HHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCcHHHHH
Confidence 4455555666 889999999999876554 34 5667777776543 455688889999999999999883
No 467
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=65.26 E-value=95 Score=31.41 Aligned_cols=49 Identities=8% Similarity=-0.052 Sum_probs=25.5
Q ss_pred CcEEEEeCCCCeEE--EEecccCCcceEEEEEecCCCCcEEEEEEC------CCcEEEEEC
Q 004468 72 THINVWSYSSRKLL--HSIETGHSANVFCTKFVPETSDELVVSGAG------DAEVRLFNL 124 (751)
Q Consensus 72 g~I~IWd~~~~~~~--~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~------Dg~V~vwd~ 124 (751)
..+.+||+.+.+-. ..+....... .++... + +.+++.|+. ...+.++|+
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~-~~~~~~-~--~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAG-AAVVNK-G--DKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBS-CEEEEE-T--TEEEEECCEEETTEECCCEEEEEC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCccc-ccEEEE-C--CEEEEEeeecCCCcccCceEEEEe
Confidence 46889998876533 2221111111 233333 3 567777654 345677776
No 468
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=64.66 E-value=8.6 Score=38.72 Aligned_cols=97 Identities=11% Similarity=-0.080 Sum_probs=64.9
Q ss_pred HHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCC------cchH
Q 004468 371 RNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS------FRAH 444 (751)
Q Consensus 371 ~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~------~~a~ 444 (751)
.-....|. +..|+..|.+++......-.+......+.+.+..+.. |+.-.|+....+|+.+.+.. ..++
T Consensus 84 ~~~~~~g~-~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~----g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~ 158 (307)
T 2ifu_A 84 MMLKDLQR-MPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP----LDLSKAVHLYQQAAAVFENEERLRQAAELI 158 (307)
T ss_dssp HHHHHTTC-GGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 33334455 7788888888887654432222223355566666644 66667787778887776543 4577
Q ss_pred HHHHHHHHHhcchHHHHHHHHHhcccCC
Q 004468 445 LYMSEALEQLCKYKEALDFAIAAQCLDP 472 (751)
Q Consensus 445 ~~~~~~l~~l~~~~~a~~~~~~~~~~~p 472 (751)
..++.++..+|++.+|+.+++.....+|
T Consensus 159 ~~lg~~~~~~g~~~~A~~~~~~al~~~~ 186 (307)
T 2ifu_A 159 GKASRLLVRQQKFDEAAASLQKEKSMYK 186 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 7888899999999999988887766554
No 469
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=63.62 E-value=17 Score=40.51 Aligned_cols=89 Identities=16% Similarity=0.020 Sum_probs=69.2
Q ss_pred hhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhc-chH
Q 004468 380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLC-KYK 458 (751)
Q Consensus 380 ~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~-~~~ 458 (751)
+..++..+..++...+.. ...|..|+-++..-+- .+...++..|.+++.+||....|+.+..-++..++ +++
T Consensus 89 ~~~eL~~~~~~l~~~pK~------y~aW~hR~w~l~~l~~-~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~ 161 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKS------YGTWHHRCWLLSRLPE-PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPA 161 (567)
T ss_dssp HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTCSS-CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccc-ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChH
Confidence 556677777788766655 4456666666554320 12356899999999999999999999999999999 899
Q ss_pred HHHHHHHHhcccCCCCh
Q 004468 459 EALDFAIAAQCLDPSNS 475 (751)
Q Consensus 459 ~a~~~~~~~~~~~p~~~ 475 (751)
+++++..+.....|.+.
T Consensus 162 ~el~~~~~~I~~~p~n~ 178 (567)
T 1dce_A 162 EELAFTDSLITRNFSNY 178 (567)
T ss_dssp HHHHHHHTTTTTTCCCH
T ss_pred HHHHHHHHHHHHCCCCc
Confidence 99999999988888754
No 470
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=63.58 E-value=45 Score=27.03 Aligned_cols=79 Identities=18% Similarity=0.099 Sum_probs=54.7
Q ss_pred HHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHH
Q 004468 367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLY 446 (751)
Q Consensus 367 ~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~ 446 (751)
...|...+..+. |..|+.-|..++........ ..+.....+..
T Consensus 9 ~~lG~~~~~~~~-y~~A~~W~~~Al~~~~~~~~------------------------------------~~~~~~~i~~~ 51 (104)
T 2v5f_A 9 FELGKVAYTEAD-YYHTELWMEQALRQLDEGEI------------------------------------STIDKVSVLDY 51 (104)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHHHHTTCC------------------------------------CSSCHHHHHHH
T ss_pred HHHHHHHHHccc-hHHHHHHHHHHHHhhhccCC------------------------------------CcccHHHHHHH
Confidence 345666666666 77888888777764322100 11233456788
Q ss_pred HHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHH
Q 004468 447 MSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVE 482 (751)
Q Consensus 447 ~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~ 482 (751)
++.|+..+|.+..|+.+.+......|.+........
T Consensus 52 L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 52 LSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 999999999999999999999888898765544443
No 471
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.57 E-value=17 Score=30.91 Aligned_cols=54 Identities=20% Similarity=0.070 Sum_probs=47.0
Q ss_pred hhhhHHHhhHHHhcCCCCC---cchHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468 422 DAQMAIRDCYNARRIDSSS---FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 422 d~y~al~d~~~a~~~~~~~---~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~ 475 (751)
+...|+....+++.++|.+ ..+++.++.++..++++.+|..++.......|...
T Consensus 43 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 99 (148)
T 2dba_A 43 DYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV 99 (148)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCH
T ss_pred CHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCH
Confidence 3556778888899999987 89999999999999999999999998888888764
No 472
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=62.43 E-value=10 Score=34.27 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=44.4
Q ss_pred HHHhhHHHhcCCCCCcchHHHHHHHHHHhcchH----------HHHHHHHHhcccCCCCh
Q 004468 426 AIRDCYNARRIDSSSFRAHLYMSEALEQLCKYK----------EALDFAIAAQCLDPSNS 475 (751)
Q Consensus 426 al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~----------~a~~~~~~~~~~~p~~~ 475 (751)
|+.....++.++|.+..+++.+..+|..+++++ +|+.++++.....|...
T Consensus 21 A~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~ 80 (158)
T 1zu2_A 21 IRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD 80 (158)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH
Confidence 555677899999999999999999999998865 99999999999999875
No 473
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=62.02 E-value=17 Score=29.85 Aligned_cols=54 Identities=20% Similarity=0.229 Sum_probs=46.9
Q ss_pred hhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468 422 DAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 422 d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~ 475 (751)
+.-.|+.-..+++.++|....+++.++.++..++++.+|..++.......|...
T Consensus 27 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 80 (131)
T 2vyi_A 27 NFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS 80 (131)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH
Confidence 345677777888899999999999999999999999999999999888888654
No 474
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=61.47 E-value=35 Score=34.00 Aligned_cols=89 Identities=12% Similarity=-0.036 Sum_probs=67.2
Q ss_pred hHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhccc----ccchh-------hhHHHhhHHHhc-CCCCCcchHHHHH
Q 004468 381 YYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRK----WKNDA-------QMAIRDCYNARR-IDSSSFRAHLYMS 448 (751)
Q Consensus 381 ~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~----w~~d~-------y~al~d~~~a~~-~~~~~~~a~~~~~ 448 (751)
..++..|..++...+.. ...|.+.+..+...+ -.|+. -.|.....+|+. ++|.+..++..++
T Consensus 33 ~~a~~~~~~al~~~p~~------~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~ 106 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHH------PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYA 106 (308)
T ss_dssp HHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 35677888888876554 345666666654321 12333 467788889999 7999999999999
Q ss_pred HHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468 449 EALEQLCKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 449 ~~l~~l~~~~~a~~~~~~~~~~~p~~~ 475 (751)
..+..+|++.+|....+......|...
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~ 133 (308)
T 2ond_A 107 DYEESRMKYEKVHSIYNRLLAIEDIDP 133 (308)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSSSSCT
T ss_pred HHHHhcCCHHHHHHHHHHHHhccccCc
Confidence 999999999999999999888888654
No 475
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=61.46 E-value=59 Score=33.50 Aligned_cols=109 Identities=10% Similarity=0.026 Sum_probs=81.6
Q ss_pred CcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCC
Q 004468 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (751)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~ 438 (751)
-.+..+.+...-...+..+.....++..+..+|...+.. ...+..|...+...+- +...++.-+..++.++|
T Consensus 49 y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~------ytaWn~R~~iL~~l~~--~l~eEL~~~~~~L~~nP 120 (349)
T 3q7a_A 49 YSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAH------YTVWQYRFSLLTSLNK--SLEDELRLMNEFAVQNL 120 (349)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTC
T ss_pred eCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchh------HHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHhCC
Confidence 334445555555555555554557899999999877665 4456666666654331 35578888999999999
Q ss_pred CCcchHHHHHHHHHHh-c-chHHHHHHHHHhcccCCCCh
Q 004468 439 SSFRAHLYMSEALEQL-C-KYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 439 ~~~~a~~~~~~~l~~l-~-~~~~a~~~~~~~~~~~p~~~ 475 (751)
.+..++.....+|..+ + .+.+++.+...+....|.+-
T Consensus 121 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy 159 (349)
T 3q7a_A 121 KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNY 159 (349)
T ss_dssp CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCH
T ss_pred CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999 7 88999999999998888653
No 476
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=61.06 E-value=2.9 Score=38.18 Aligned_cols=51 Identities=10% Similarity=-0.035 Sum_probs=45.9
Q ss_pred hhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCC
Q 004468 422 DAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDP 472 (751)
Q Consensus 422 d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p 472 (751)
+.-.|+..+.+++.++|.+..+++.++.++...|++.+|..+++.+....|
T Consensus 21 ~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p 71 (176)
T 2r5s_A 21 EHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ 71 (176)
T ss_dssp CHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC
T ss_pred CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC
Confidence 355678888899999999999999999999999999999999998887777
No 477
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=61.03 E-value=12 Score=30.32 Aligned_cols=41 Identities=12% Similarity=-0.040 Sum_probs=35.0
Q ss_pred CCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 436 IDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 436 ~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
.+|.++.+++.++.++...+++.+|+.+++.+....|....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 42 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG 42 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 36888999999999999999999999999999998887654
No 478
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=60.79 E-value=89 Score=35.55 Aligned_cols=114 Identities=11% Similarity=0.157 Sum_probs=59.3
Q ss_pred CCCEEEEEeCCC------cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC--cEEEEECCCCCCCCC
Q 004468 61 KGSLLISGSDDT------HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFSGRGL 132 (751)
Q Consensus 61 dg~~LaSgs~Dg------~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg--~V~vwd~~~~~~~~~ 132 (751)
++++++.||.++ .+.+||+.+.+....-.......-.++....+ +.+++.|+.++ .+.+||+.+..-...
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~--~~iyv~GG~~~~~~v~~yd~~t~~W~~~ 528 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPD--GNVLILGGVTEGPAMLLYNVTEEIFKDV 528 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTT--SCEEEECCBCSSCSEEEEETTTTEEEEC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcC--CEEEEECCCCCCCCEEEEECCCCceEEc
Confidence 677777777433 47788887754332110111111122333234 68888887655 689999986432111
Q ss_pred CCCCCCCceeecccCCceeEEEEecCCCCEEEEEeC--C-----CcEEEEecCCCC
Q 004468 133 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE--D-----GTLRQHDFRQGS 181 (751)
Q Consensus 133 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~--D-----g~I~iwDlr~~~ 181 (751)
.+...+.........+.+....+.+++.||. + ..+.+||+.+..
T Consensus 529 -----~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 529 -----TPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp -----CCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred -----cCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 0000011111112234555433678888876 2 357788887764
No 479
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=58.43 E-value=22 Score=37.36 Aligned_cols=107 Identities=11% Similarity=-0.061 Sum_probs=69.4
Q ss_pred CcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhh------------hH----hHHHHHhhcccccch
Q 004468 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHE------------CL----CIRAALLLKRKWKND 422 (751)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~------------~~----~~ra~~~~~r~w~~d 422 (751)
.....+.+...+......+. ...++..+.+++..+....-+.+... .+ ..++.+++. .|+
T Consensus 111 D~~~f~~l~~~~~~~~~~~~-~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~---~g~ 186 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGR-FEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIA---CGR 186 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH---TTC
T ss_pred hHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH---CCC
Confidence 33444556666655555555 55677778888877754433322110 00 111222222 344
Q ss_pred hhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcc
Q 004468 423 AQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQC 469 (751)
Q Consensus 423 ~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~ 469 (751)
...++..+..++..+|.+-.+|..+++||...|+..+|+........
T Consensus 187 ~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 187 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55677788888999999999999999999999999999988766544
No 480
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=58.29 E-value=32 Score=38.22 Aligned_cols=95 Identities=13% Similarity=0.067 Sum_probs=73.1
Q ss_pred hcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccc-------hhhhHHHhhHHHhcCCCCCcchHHHH
Q 004468 375 EEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKN-------DAQMAIRDCYNARRIDSSSFRAHLYM 447 (751)
Q Consensus 375 ~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~-------d~y~al~d~~~a~~~~~~~~~a~~~~ 447 (751)
..+.....|+..+..+|...+.. ...|..|..++..-+-.. ....++..+..++.++|....|+++.
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~------~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR 113 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDF------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHR 113 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchh------HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34443446689999999877665 446667766665533211 15677899999999999999999999
Q ss_pred HHHHHHhc--chHHHHHHHHHhcccCCCCh
Q 004468 448 SEALEQLC--KYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 448 ~~~l~~l~--~~~~a~~~~~~~~~~~p~~~ 475 (751)
.-++..++ ++.+++++...+....|.+.
T Consensus 114 ~w~l~~l~~~~~~~el~~~~k~l~~d~~N~ 143 (567)
T 1dce_A 114 CWLLSRLPEPNWARELELCARFLEADERNF 143 (567)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHcccccHHHHHHHHHHHHhhccccc
Confidence 99999999 56999999999988888653
No 481
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=58.21 E-value=23 Score=35.87 Aligned_cols=91 Identities=12% Similarity=0.061 Sum_probs=69.4
Q ss_pred ChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHh----hcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHh
Q 004468 379 HPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALL----LKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQL 454 (751)
Q Consensus 379 ~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~----~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l 454 (751)
.+..++..+..+|...+.. ...+..|.-.+ ...+-.++...++.-|.+++.++|....++.+..-++..+
T Consensus 84 ~~~eeL~~~~~~L~~nPk~------y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l 157 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKN------YQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTF 157 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTC------CHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHCccc------HHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 4677788888888777665 33555665555 2221124556778889999999999999999999999999
Q ss_pred cchH--HHHHHHHHhcccCCCCh
Q 004468 455 CKYK--EALDFAIAAQCLDPSNS 475 (751)
Q Consensus 455 ~~~~--~a~~~~~~~~~~~p~~~ 475 (751)
+++. +++++........|.+-
T Consensus 158 ~~~~~~~EL~~~~~~i~~d~~N~ 180 (306)
T 3dra_A 158 DLHNDAKELSFVDKVIDTDLKNN 180 (306)
T ss_dssp TCTTCHHHHHHHHHHHHHCTTCH
T ss_pred cccChHHHHHHHHHHHHhCCCCH
Confidence 9988 99999988888877543
No 482
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=58.11 E-value=22 Score=28.76 Aligned_cols=54 Identities=28% Similarity=0.342 Sum_probs=46.4
Q ss_pred hhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468 422 DAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 422 d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~ 475 (751)
+.-.|+.-..+++.++|....+++.++.++...+++.+|..++.......|...
T Consensus 24 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 77 (125)
T 1na0_A 24 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77 (125)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH
Confidence 455677777888889999999999999999999999999999988888777654
No 483
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=57.74 E-value=81 Score=34.37 Aligned_cols=92 Identities=13% Similarity=-0.043 Sum_probs=55.8
Q ss_pred hhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHH
Q 004468 374 LEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQ 453 (751)
Q Consensus 374 ~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~ 453 (751)
...|. +..|+..+.+++...+.. ...+...+..+.+. |+.-.|+.-..+++.+.|.+..++..++.++..
T Consensus 384 ~~~g~-~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 384 LCVNK-ISEARRYFSKSSTMDPQF------GPAWIGFAHSFAIE---GEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHH---TCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH
T ss_pred HHhcc-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 33444 566666666666543322 12344444444442 334456666666677777777777777777777
Q ss_pred hcchHHHHHHHHHhcccCCCCh
Q 004468 454 LCKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 454 l~~~~~a~~~~~~~~~~~p~~~ 475 (751)
.|++.+|..++.......|...
T Consensus 454 ~g~~~~A~~~~~~~~~~~~~~~ 475 (597)
T 2xpi_A 454 LGNILLANEYLQSSYALFQYDP 475 (597)
T ss_dssp HTCHHHHHHHHHHHHHHCCCCH
T ss_pred cCCHHHHHHHHHHHHHhCCCCh
Confidence 7777777777777766666543
No 484
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=56.43 E-value=36 Score=40.48 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=33.2
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 004468 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI 88 (751)
Q Consensus 52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l 88 (751)
.|.++...++..+|.+-+.|+++|||++.+++++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 5778888888999999999999999999999988765
No 485
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=56.32 E-value=43 Score=35.35 Aligned_cols=103 Identities=15% Similarity=0.058 Sum_probs=71.3
Q ss_pred HHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhccc----------------ccchhhhHHHh
Q 004468 366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRK----------------WKNDAQMAIRD 429 (751)
Q Consensus 366 l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~----------------w~~d~y~al~d 429 (751)
+...+......|. +..++..+..++...+.. ...+.+.+.++.... -....-.|+..
T Consensus 250 ~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~------~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 322 (472)
T 4g1t_A 250 LRSAAKFYRRKDE-PDKAIELLKKALEYIPNN------AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAH 322 (472)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCc-hHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHH
Confidence 3344444555566 778899999999877664 223334443332110 01112346667
Q ss_pred hHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468 430 CYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 430 ~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~ 475 (751)
..+++.++|....+++.++.++..++++.+|..+.++.....|...
T Consensus 323 ~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~ 368 (472)
T 4g1t_A 323 LKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV 368 (472)
T ss_dssp HHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCCh
Confidence 7888999999999999999999999999999999988877666543
No 486
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=53.67 E-value=8.8 Score=38.31 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=51.4
Q ss_pred HHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004468 409 IRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPS 473 (751)
Q Consensus 409 ~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~ 473 (751)
..|..++.. |+.-.|+.-...++.++|.+..+++.+++++...|++.+|...++.+....|.
T Consensus 122 ~~a~~~~~~---g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~ 183 (287)
T 3qou_A 122 QQAMQLMQE---SNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD 183 (287)
T ss_dssp HHHHHHHHT---TCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS
T ss_pred HHHHHHHhC---CCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc
Confidence 344444433 45667888888999999999999999999999999999999999988877774
No 487
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=52.08 E-value=23 Score=36.30 Aligned_cols=76 Identities=18% Similarity=0.089 Sum_probs=41.9
Q ss_pred HHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHH
Q 004468 369 IARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMS 448 (751)
Q Consensus 369 ~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~ 448 (751)
.+...+..+. |..|+..|..+|...+.. ...+.+++.+++..+ +.-.|+.+..+++.++|.+..++..+.
T Consensus 236 la~~~~~~g~-~~~A~~~~~~al~~~p~~------~~a~~~lg~a~~~~g---~~~~A~~~l~~al~l~p~~~~a~~~L~ 305 (338)
T 2if4_A 236 IAACLIKLKR-YDEAIGHCNIVLTEEEKN------PKALFRRGKAKAELG---QMDSARDDFRKAQKYAPDDKAIRRELR 305 (338)
T ss_dssp HHHHHHTTTC-CHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTT---CHHHHHHHHHHTTC-------------
T ss_pred HHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 3444445555 889999999999876544 346778888887654 456789999999999999999988887
Q ss_pred HHHHHh
Q 004468 449 EALEQL 454 (751)
Q Consensus 449 ~~l~~l 454 (751)
.+....
T Consensus 306 ~l~~~~ 311 (338)
T 2if4_A 306 ALAEQE 311 (338)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 774443
No 488
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=51.75 E-value=26 Score=34.64 Aligned_cols=66 Identities=12% Similarity=-0.135 Sum_probs=53.4
Q ss_pred hHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468 408 CIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (751)
Q Consensus 408 ~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~ 476 (751)
..++..+... |+.-.|+....+++.++|.+..+++.++.++..++++.+|...+.......|....
T Consensus 8 ~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 73 (281)
T 2c2l_A 8 KEQGNRLFVG---RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK 73 (281)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred HHHHHHHHHc---CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Confidence 3444444433 33456777888899999999999999999999999999999999999999887653
No 489
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=51.42 E-value=25 Score=33.67 Aligned_cols=107 Identities=17% Similarity=-0.022 Sum_probs=73.8
Q ss_pred cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCC--CCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcC-
Q 004468 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSG--IGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRI- 436 (751)
Q Consensus 360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~--~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~- 436 (751)
+.....+...+......|. +..|+..+.+++...... ..+......+.+.+..+...+ +.-.|+....+++.+
T Consensus 40 ~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~ 115 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNK-YKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG---KYKEAEPLCKRALEIR 115 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHH
Confidence 3344455556666666777 888999999888754221 111222335666676666543 455677777777776
Q ss_pred -------CCCCcchHHHHHHHHHHhcchHHHHHHHHHhccc
Q 004468 437 -------DSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCL 470 (751)
Q Consensus 437 -------~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~ 470 (751)
+|....++..++.++..++++.+|..++......
T Consensus 116 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 116 EKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5778889999999999999999999988777654
No 490
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=50.40 E-value=39 Score=30.85 Aligned_cols=53 Identities=19% Similarity=0.149 Sum_probs=45.8
Q ss_pred hhhHHHhhHHHhcCCCCCc----------------chHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468 423 AQMAIRDCYNARRIDSSSF----------------RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 423 ~y~al~d~~~a~~~~~~~~----------------~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~ 475 (751)
...|+.-..+++.+.|... .+++.++.++..++++.+|+.++.......|...
T Consensus 54 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 122 (198)
T 2fbn_A 54 INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV 122 (198)
T ss_dssp HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccH
Confidence 4467777888888888887 8999999999999999999999999888888664
No 491
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=50.01 E-value=14 Score=32.66 Aligned_cols=53 Identities=17% Similarity=0.083 Sum_probs=44.0
Q ss_pred hhhHHHhhHHHhcC------------------CCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468 423 AQMAIRDCYNARRI------------------DSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (751)
Q Consensus 423 ~y~al~d~~~a~~~------------------~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~ 475 (751)
.-.|+....+++.+ +|....+++.++.|+..++++.+|+.++..+....|...
T Consensus 27 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~ 97 (162)
T 3rkv_A 27 YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNE 97 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcch
Confidence 44566666667776 777778999999999999999999999999888888765
No 492
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=48.12 E-value=33 Score=29.22 Aligned_cols=102 Identities=8% Similarity=-0.016 Sum_probs=65.4
Q ss_pred HHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCC----
Q 004468 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS---- 440 (751)
Q Consensus 365 ~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~---- 440 (751)
.+...+......+. +..++..+.+++........+......+.+.+..+...+ +.-.|+.....++.+.+..
T Consensus 11 ~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 11 AFGNLGNTHYLLGN-FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLG---EFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhCCcH
Confidence 34445555566666 888888888888755432222222234556666665543 3445666666666554332
Q ss_pred --cchHHHHHHHHHHhcchHHHHHHHHHhccc
Q 004468 441 --FRAHLYMSEALEQLCKYKEALDFAIAAQCL 470 (751)
Q Consensus 441 --~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~ 470 (751)
..++..++.++..++++.+|..++......
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 557888899999999999999888766544
No 493
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=48.07 E-value=31 Score=30.85 Aligned_cols=67 Identities=18% Similarity=0.196 Sum_probs=49.4
Q ss_pred HHHhhcccccchhhhHHHhhHHHhcCC-C-CCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468 411 AALLLKRKWKNDAQMAIRDCYNARRID-S-SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (751)
Q Consensus 411 a~~~~~r~w~~d~y~al~d~~~a~~~~-~-~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~ 477 (751)
|.++++-.-..++..++.=....+..+ | .+..++|+++-+...++.|.+|..+++.+...-|.+...
T Consensus 39 a~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 39 AWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 334444333445556655555566666 5 567899999999999999999999999999999976543
No 494
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=47.47 E-value=12 Score=30.94 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=44.4
Q ss_pred hhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004468 422 DAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPS 473 (751)
Q Consensus 422 d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~ 473 (751)
+.-.|+.-..+++.++|....+++.++.++...+++.+|..++.......|.
T Consensus 19 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (131)
T 1elr_A 19 DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70 (131)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc
Confidence 3456777778888999999999999999999999999999998887766654
No 495
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=47.02 E-value=32 Score=35.56 Aligned_cols=105 Identities=10% Similarity=0.030 Sum_probs=77.0
Q ss_pred cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcC---
Q 004468 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRI--- 436 (751)
Q Consensus 360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~--- 436 (751)
+.....+...+......|. |..|+..+.+++...+.. +.....++...+..+... |+.-.|+....+++.+
T Consensus 45 ~~~~~~l~~~g~~~~~~g~-~~~A~~~~~~al~~~~~~--~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~~~ 118 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGD-CRAGVAFFQAAIQAGTED--LRTLSAIYSQLGNAYFYL---GDYNKAMQYHKHDLTLAKS 118 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCSC--HHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHhcccC--hhHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHH
Confidence 4556667777888888888 999999999999875442 111223566666666654 3455667777777766
Q ss_pred ---CCCCcchHHHHHHHHHHhcchHHHHHHHHHhccc
Q 004468 437 ---DSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCL 470 (751)
Q Consensus 437 ---~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~ 470 (751)
++....++..++.++..+|++.+|..++......
T Consensus 119 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 155 (411)
T 4a1s_A 119 MNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTL 155 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6777889999999999999999999888776554
No 496
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=46.99 E-value=2.5e+02 Score=28.68 Aligned_cols=171 Identities=13% Similarity=0.186 Sum_probs=96.3
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC-eEEEEecccC----CcceEEEEEecCCCCcEEEEEE-------CCC
Q 004468 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGH----SANVFCTKFVPETSDELVVSGA-------GDA 117 (751)
Q Consensus 50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~-~~~~~l~~~h----~~~V~~v~fsp~s~~~~l~sgs-------~Dg 117 (751)
...|.-=+|-.+.. |+--.. ..|.-|++... .+.+.+ ..| ...|..-.-.++ .++++-.+ -.|
T Consensus 106 ~e~VvfWkWis~~~-L~lVT~-taVyHWs~~~~s~P~kvF-dR~~~L~~~QIInY~~d~~--~kW~~l~GI~~~~~~v~G 180 (365)
T 2xzh_A 106 TDDVTFWKWISLNT-VALVTD-NAVYHWSMEGESQPVKMF-DRHSSLAGCQIINYRTDAK--QKWLLLTGISAQQNRVVG 180 (365)
T ss_dssp SSCEEEEEECSSSE-EEEEES-SEEEEEESSTTCCCEEEE-ECCGGGTTCEEEEEEECTT--SCEEEEEEEEEETTEEEE
T ss_pred CCccEEEEecCCCe-EEEEcC-CcEEEEcccCCCCCceee-ecchhcccceEEEEEECCC--CCEEEEEeEeccCCccce
Confidence 35677777765444 444433 47999998743 344444 333 234555555665 56655333 247
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEe--cCCCCEEEEEeCC---CcEEEEecCCCCCCCCCCCCCCc
Q 004468 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE--VGNPHVVWSASED---GTLRQHDFRQGSSCPPAGSSHQE 192 (751)
Q Consensus 118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s--p~~~~~l~s~s~D---g~I~iwDlr~~~~~~~~~~~~~~ 192 (751)
.+.+|.++. +..+.+.+|...-..+.+. +....+|+-+... +.+++-++.....- ....
T Consensus 181 ~mQLYS~er-----------~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~----~~~f- 244 (365)
T 2xzh_A 181 AMQLYSVDR-----------KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG----NQPF- 244 (365)
T ss_dssp EEEEEETTT-----------TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTT----CCCC-
T ss_pred eEEEEeecc-----------cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCC----CCCc-
Confidence 789999985 3456778887654433332 1112244433332 57888888543100 0000
Q ss_pred cceEEEecccCceecccCCCC-CccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 004468 193 CRNILLDLRCGAKRSLADPPK-QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (751)
Q Consensus 193 ~~~~l~~~~~~~~~~~~~~~~-~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~ 251 (751)
..... .+.+++. .....-++.+++ ....+..-..-|.|++||+.++..+
T Consensus 245 -~kk~v--------di~fppea~~DFPVamqvs~-kygviyviTK~G~ihlyDleTgt~i 294 (365)
T 2xzh_A 245 -PKKAV--------DVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCI 294 (365)
T ss_dssp -CCEEE--------EECCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEE
T ss_pred -ccccc--------eeeCCccccCCceEEEEecc-cCCEEEEEeCCcEEEEEEcccCcEE
Confidence 00011 1222222 234456788888 4678888899999999999987643
No 497
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=46.87 E-value=39 Score=34.73 Aligned_cols=103 Identities=16% Similarity=0.003 Sum_probs=73.4
Q ss_pred HHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhc-----CCCCCc
Q 004468 367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARR-----IDSSSF 441 (751)
Q Consensus 367 ~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~-----~~~~~~ 441 (751)
...+......|. +..|+..+.+++........+......+.+.+..+... |+.-.|+.-..+++. .+|...
T Consensus 186 ~~lg~~y~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~---~~~~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 186 FVIAGNYDDFKH-YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS---GDDQMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHhhCChhHH
Confidence 344455555666 88889999988875543322222233556666666554 345567777778877 888889
Q ss_pred chHHHHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004468 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPS 473 (751)
Q Consensus 442 ~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~ 473 (751)
.+.+.++.++..+|++.+|..+++......+.
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887766554
No 498
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=46.77 E-value=23 Score=34.83 Aligned_cols=104 Identities=11% Similarity=0.034 Sum_probs=72.6
Q ss_pred hHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcC------
Q 004468 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRI------ 436 (751)
Q Consensus 363 ~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~------ 436 (751)
+..+...+...+..|. +..|+..+.+++...+.. +.....++...+..+...+ +.-.|+....+++.+
T Consensus 5 ~~~l~~~g~~~~~~g~-~~~A~~~~~~al~~~~~~--~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~ 78 (338)
T 3ro2_A 5 CLELALEGERLCKSGD-CRAGVSFFEAAVQVGTED--LKTLSAIYSQLGNAYFYLH---DYAKALEYHHHDLTLARTIGD 78 (338)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCSC--HHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhCccc--HHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhcccc
Confidence 3455666777777787 889999999999875442 2222335556666665443 344566666666554
Q ss_pred CCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCC
Q 004468 437 DSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDP 472 (751)
Q Consensus 437 ~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p 472 (751)
.+....++..++.++..+|++.+|..++.......+
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 114 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR 114 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 555677899999999999999999998887765544
No 499
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=46.55 E-value=45 Score=34.27 Aligned_cols=100 Identities=15% Similarity=-0.007 Sum_probs=71.6
Q ss_pred HHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhc-----CC-CCCc
Q 004468 368 EIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARR-----ID-SSSF 441 (751)
Q Consensus 368 ~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~-----~~-~~~~ 441 (751)
..+......|. +..|+..+..++........+......+.+.+..+...+ +.-.|+....+|+. .+ |...
T Consensus 189 ~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 189 LFATNFLDLKQ-YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS---QYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHhcC-HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhhccchhHH
Confidence 33444455566 888999999988766544333333346667777776554 45567777778877 56 8888
Q ss_pred chHHHHHHHHHHhcchHHHHHHHHHhcccC
Q 004468 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLD 471 (751)
Q Consensus 442 ~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~ 471 (751)
.+++.++.++..+|++.+|..++.......
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 294 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYS 294 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999887765543
No 500
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=46.18 E-value=56 Score=29.37 Aligned_cols=104 Identities=7% Similarity=-0.101 Sum_probs=69.6
Q ss_pred hHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcC------
Q 004468 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRI------ 436 (751)
Q Consensus 363 ~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~------ 436 (751)
...+...+......|. +..++..+.+++........+......+.+.+..+...+ +.-.|+.....++.+
T Consensus 26 ~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~ 101 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDR-FDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG---NWDAARRCFLEERELLASLPE 101 (203)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcCc
Confidence 3444555666666777 888999999888755543233333345666666666543 455566666667665
Q ss_pred CC-CCcchHHHHHHHHHHhcchHHHHHHHHHhccc
Q 004468 437 DS-SSFRAHLYMSEALEQLCKYKEALDFAIAAQCL 470 (751)
Q Consensus 437 ~~-~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~ 470 (751)
++ ....++..++.++..+|++.+|..++.+....
T Consensus 102 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (203)
T 3gw4_A 102 DPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 22 34557888899999999999999888776543
Done!