Query 004469
Match_columns 751
No_of_seqs 340 out of 2213
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 23:55:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004469.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004469hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03788 marine_srt_targ mari 100.0 4.1E-80 8.8E-85 720.4 67.2 528 86-632 2-573 (596)
2 PF13768 VWA_3: von Willebrand 99.9 3.5E-25 7.6E-30 214.7 17.5 153 326-485 1-155 (155)
3 TIGR02921 PEP_integral PEP-CTE 99.9 2.5E-23 5.4E-28 225.0 27.2 448 80-628 412-887 (952)
4 cd01461 vWA_interalpha_trypsin 99.9 2.5E-23 5.5E-28 204.3 20.9 170 324-497 1-170 (171)
5 PF08487 VIT: Vault protein in 99.9 1.7E-23 3.6E-28 193.4 15.7 111 81-197 2-118 (118)
6 smart00609 VIT Vault protein I 99.9 3.2E-23 6.9E-28 193.3 15.4 113 79-197 12-130 (130)
7 cd01463 vWA_VGCC_like VWA Volt 99.9 2.9E-22 6.2E-27 201.1 19.4 165 323-489 11-189 (190)
8 cd01466 vWA_C3HC4_type VWA C3H 99.9 9.8E-21 2.1E-25 183.8 18.1 153 326-487 1-155 (155)
9 cd01465 vWA_subgroup VWA subgr 99.9 1.9E-20 4E-25 183.9 18.8 165 327-494 2-168 (170)
10 cd01470 vWA_complement_factors 99.8 1.2E-19 2.5E-24 183.5 17.0 168 327-495 2-196 (198)
11 cd01456 vWA_ywmD_type VWA ywmD 99.8 2.8E-19 6.1E-24 181.8 18.6 165 322-488 17-202 (206)
12 TIGR00868 hCaCC calcium-activa 99.8 2.3E-17 4.9E-22 194.3 22.3 171 322-503 301-476 (863)
13 PRK13685 hypothetical protein; 99.8 4.1E-17 8.9E-22 177.3 22.1 169 324-501 87-288 (326)
14 cd01451 vWA_Magnesium_chelatas 99.7 5.7E-17 1.2E-21 161.0 18.2 156 328-491 3-169 (178)
15 cd01467 vWA_BatA_type VWA BatA 99.7 1.1E-16 2.3E-21 159.0 20.0 161 325-491 2-179 (180)
16 cd01464 vWA_subfamily VWA subf 99.7 4.6E-17 1E-21 161.4 15.3 141 325-477 3-159 (176)
17 cd01480 vWA_collagen_alpha_1-V 99.7 4.6E-17 1E-21 162.9 15.0 153 325-484 2-168 (186)
18 cd01472 vWA_collagen von Wille 99.7 2.4E-16 5.2E-21 154.2 18.5 152 326-487 1-161 (164)
19 PF13519 VWA_2: von Willebrand 99.7 1.2E-16 2.7E-21 156.0 16.4 163 327-498 1-171 (172)
20 cd01453 vWA_transcription_fact 99.7 5.2E-16 1.1E-20 154.7 18.0 166 326-506 4-181 (183)
21 cd01474 vWA_ATR ATR (Anthrax T 99.7 6.3E-16 1.4E-20 154.5 18.4 172 325-504 4-182 (185)
22 cd01471 vWA_micronemal_protein 99.7 5.1E-16 1.1E-20 155.2 15.9 149 327-479 2-161 (186)
23 TIGR03436 acidobact_VWFA VWFA- 99.7 2.2E-15 4.8E-20 161.8 20.8 172 324-505 52-256 (296)
24 cd01475 vWA_Matrilin VWA_Matri 99.7 1.1E-15 2.3E-20 157.6 16.2 170 325-504 2-184 (224)
25 cd01477 vWA_F09G8-8_type VWA F 99.7 2.7E-15 5.9E-20 150.6 17.9 158 323-484 17-190 (193)
26 cd01462 VWA_YIEM_type VWA YIEM 99.6 3.9E-15 8.4E-20 143.8 16.9 145 326-478 1-147 (152)
27 cd01469 vWA_integrins_alpha_su 99.6 6.3E-15 1.4E-19 146.3 17.6 159 327-492 2-174 (177)
28 cd01454 vWA_norD_type norD typ 99.6 8.4E-15 1.8E-19 144.8 16.1 142 327-469 2-156 (174)
29 PTZ00441 sporozoite surface pr 99.6 2E-14 4.3E-19 161.3 20.9 180 324-507 41-234 (576)
30 cd01450 vWFA_subfamily_ECM Von 99.6 1.2E-14 2.6E-19 140.5 16.4 148 327-482 2-158 (161)
31 cd01482 vWA_collagen_alphaI-XI 99.6 2E-14 4.2E-19 140.9 17.1 147 327-483 2-157 (164)
32 PF00092 VWA: von Willebrand f 99.6 2.2E-14 4.8E-19 141.2 14.9 166 327-498 1-177 (178)
33 PRK13406 bchD magnesium chelat 99.6 3.7E-14 8.1E-19 163.5 18.8 159 322-490 398-571 (584)
34 cd01473 vWA_CTRP CTRP for CS 99.6 2.1E-13 4.4E-18 137.1 19.7 171 327-502 2-189 (192)
35 cd01476 VWA_integrin_invertebr 99.6 1.4E-13 3E-18 134.4 17.4 144 327-480 2-158 (163)
36 smart00327 VWA von Willebrand 99.6 1.8E-13 4E-18 134.1 18.2 154 325-485 1-164 (177)
37 cd01455 vWA_F11C1-5a_type Von 99.5 4.5E-13 9.7E-18 132.1 18.1 170 326-503 1-189 (191)
38 PF13757 VIT_2: Vault protein 99.5 1.1E-13 2.4E-18 115.9 11.2 70 79-153 9-78 (78)
39 cd00198 vWFA Von Willebrand fa 99.5 5.8E-13 1.2E-17 127.3 17.5 148 327-479 2-155 (161)
40 TIGR02031 BchD-ChlD magnesium 99.5 3.1E-13 6.7E-18 157.4 18.6 162 324-490 406-584 (589)
41 COG1240 ChlD Mg-chelatase subu 99.5 5.5E-13 1.2E-17 135.0 16.7 165 323-492 76-250 (261)
42 KOG2353 L-type voltage-depende 99.5 2.6E-13 5.7E-18 163.0 15.4 185 321-510 221-419 (1104)
43 cd01457 vWA_ORF176_type VWA OR 99.5 1.4E-12 3E-17 132.0 15.8 147 325-478 2-165 (199)
44 COG4245 TerY Uncharacterized p 99.4 3.8E-12 8.2E-17 122.0 14.4 142 326-479 4-162 (207)
45 cd01481 vWA_collagen_alpha3-VI 99.4 1.6E-11 3.5E-16 120.4 18.6 145 326-480 1-157 (165)
46 TIGR02442 Cob-chelat-sub cobal 99.4 6.8E-12 1.5E-16 147.7 18.9 156 323-486 463-632 (633)
47 PF10138 vWA-TerF-like: vWA fo 99.3 1.9E-10 4.1E-15 114.0 17.0 158 326-492 2-174 (200)
48 cd01452 VWA_26S_proteasome_sub 99.2 1.9E-09 4.2E-14 107.0 19.6 157 327-492 5-178 (187)
49 PRK10997 yieM hypothetical pro 99.1 1.2E-09 2.6E-14 122.4 17.4 144 322-473 320-465 (487)
50 COG2425 Uncharacterized protei 99.1 7.1E-10 1.5E-14 122.0 12.6 144 326-478 273-418 (437)
51 cd01460 vWA_midasin VWA_Midasi 99.1 6E-09 1.3E-13 109.0 18.0 168 325-501 60-257 (266)
52 cd01458 vWA_ku Ku70/Ku80 N-ter 98.9 3.4E-08 7.4E-13 101.4 16.3 141 326-467 2-174 (218)
53 PF11775 CobT_C: Cobalamin bio 98.8 7.2E-08 1.6E-12 96.4 14.3 171 324-503 11-216 (219)
54 PF05762 VWA_CoxE: VWA domain 98.6 9.3E-07 2E-11 91.1 14.0 128 323-461 55-185 (222)
55 TIGR01651 CobT cobaltochelatas 98.4 1.4E-06 3.1E-11 98.5 12.3 168 324-502 391-595 (600)
56 COG4867 Uncharacterized protei 98.4 9.4E-06 2E-10 86.8 16.1 157 323-495 461-641 (652)
57 PF09967 DUF2201: VWA-like dom 98.4 1.7E-06 3.7E-11 80.9 9.4 96 328-436 1-96 (126)
58 PF04056 Ssl1: Ssl1-like; Int 98.4 1.5E-05 3.2E-10 79.5 16.0 165 331-507 1-176 (193)
59 COG2304 Uncharacterized protei 98.2 2.2E-05 4.8E-10 87.7 15.7 169 322-493 34-205 (399)
60 COG4548 NorD Nitric oxide redu 98.2 5.9E-06 1.3E-10 91.1 9.5 177 324-504 445-636 (637)
61 KOG3768 DEAD box RNA helicase 98.1 2.1E-05 4.5E-10 87.2 12.8 173 328-507 4-232 (888)
62 cd01459 vWA_copine_like VWA Co 98.1 6E-05 1.3E-09 78.7 15.7 147 326-477 32-206 (254)
63 cd01468 trunk_domain trunk dom 98.1 0.00029 6.2E-09 73.5 19.1 162 324-489 2-224 (239)
64 cd01479 Sec24-like Sec24-like: 97.9 0.00052 1.1E-08 71.8 18.5 158 324-487 2-219 (244)
65 PF04811 Sec23_trunk: Sec23/Se 97.8 0.00041 9E-09 72.4 15.7 163 324-490 2-227 (243)
66 KOG2807 RNA polymerase II tran 97.8 0.00022 4.7E-09 74.3 12.8 169 324-507 59-239 (378)
67 PRK05325 hypothetical protein; 97.7 0.00069 1.5E-08 74.6 14.6 163 324-502 221-396 (401)
68 PLN00162 transport protein sec 97.6 0.037 7.9E-07 67.1 29.6 177 322-502 121-392 (761)
69 COG4547 CobT Cobalamin biosynt 97.5 0.00048 1E-08 74.9 10.5 146 327-474 415-597 (620)
70 PF06707 DUF1194: Protein of u 97.5 0.0063 1.4E-07 61.2 17.1 175 325-503 3-202 (205)
71 PF11443 DUF2828: Domain of un 97.4 0.00047 1E-08 78.6 9.7 104 326-435 341-449 (534)
72 cd01478 Sec23-like Sec23-like: 97.4 0.0067 1.5E-07 64.2 17.7 163 325-490 3-257 (267)
73 PF04285 DUF444: Protein of un 97.4 0.0025 5.5E-08 70.8 14.2 161 324-502 245-418 (421)
74 TIGR02877 spore_yhbH sporulati 97.4 0.0032 7E-08 68.3 14.2 158 324-499 201-370 (371)
75 PTZ00395 Sec24-related protein 97.4 0.047 1E-06 67.3 25.1 225 322-549 949-1260(1560)
76 KOG1985 Vesicle coat complex C 97.2 0.011 2.4E-07 69.0 17.4 178 309-489 278-511 (887)
77 KOG1327 Copine [Signal transdu 97.2 0.006 1.3E-07 68.9 14.0 147 324-475 284-461 (529)
78 COG3552 CoxE Protein containin 97.1 0.0022 4.7E-08 68.8 9.1 107 323-437 216-326 (395)
79 PF07002 Copine: Copine; Inte 97.0 0.01 2.2E-07 56.9 11.9 120 341-464 11-146 (146)
80 smart00187 INB Integrin beta s 96.8 0.067 1.5E-06 59.3 17.9 186 308-506 87-341 (423)
81 PF03731 Ku_N: Ku70/Ku80 N-ter 96.8 0.0055 1.2E-07 63.0 9.0 107 328-434 2-140 (224)
82 KOG1984 Vesicle coat complex C 96.7 0.25 5.5E-06 58.4 22.7 288 322-614 414-794 (1007)
83 TIGR00627 tfb4 transcription f 96.4 0.1 2.2E-06 55.4 15.6 166 327-494 4-215 (279)
84 COG5028 Vesicle coat complex C 96.4 1 2.2E-05 52.9 24.3 309 312-624 263-657 (861)
85 PF03850 Tfb4: Transcription f 95.7 0.6 1.3E-05 49.7 17.6 166 327-494 3-213 (276)
86 COG5151 SSL1 RNA polymerase II 95.6 0.15 3.3E-06 53.2 11.8 171 324-508 86-271 (421)
87 COG3864 Uncharacterized protei 95.5 0.042 9.1E-07 57.6 7.5 94 327-437 263-357 (396)
88 TIGR00578 ku70 ATP-dependent D 95.3 0.29 6.2E-06 57.8 14.8 109 325-434 10-150 (584)
89 KOG2884 26S proteasome regulat 95.1 1.3 2.9E-05 44.5 16.3 133 326-467 4-148 (259)
90 COG2718 Uncharacterized conser 95.0 0.16 3.5E-06 54.9 10.4 162 325-502 246-417 (423)
91 PF14415 DUF4424: Domain of un 94.5 2.8 6E-05 44.1 17.9 49 101-152 2-68 (253)
92 KOG4465 Uncharacterized conser 94.5 0.2 4.3E-06 53.5 9.3 134 321-464 423-562 (598)
93 COG5148 RPN10 26S proteasome r 93.9 2.2 4.9E-05 41.8 14.3 138 326-472 4-153 (243)
94 PF11265 Med25_VWA: Mediator c 93.7 0.68 1.5E-05 47.4 11.2 110 323-434 11-150 (226)
95 COG1721 Uncharacterized conser 92.6 0.97 2.1E-05 51.2 11.6 104 325-434 224-334 (416)
96 KOG1986 Vesicle coat complex C 89.0 13 0.00029 43.6 16.2 49 324-374 120-168 (745)
97 COG5242 TFB4 RNA polymerase II 85.1 41 0.00088 34.3 15.0 144 343-492 43-218 (296)
98 PF00362 Integrin_beta: Integr 84.5 2 4.2E-05 48.7 6.5 188 308-507 90-345 (426)
99 KOG2487 RNA polymerase II tran 77.5 63 0.0014 34.0 13.7 165 324-492 22-231 (314)
100 COG5271 MDN1 AAA ATPase contai 76.6 34 0.00073 44.9 13.2 120 326-449 4393-4522(4600)
101 TIGR03602 streptolysinS bacter 74.5 1.1 2.3E-05 33.9 0.1 8 707-714 28-35 (56)
102 KOG1226 Integrin beta subunit 66.2 21 0.00046 42.6 8.3 61 306-371 118-180 (783)
103 PF06415 iPGM_N: BPG-independe 62.7 52 0.0011 33.9 9.5 97 406-504 13-125 (223)
104 KOG2326 DNA-binding subunit of 58.2 1.7E+02 0.0036 34.3 13.2 134 326-464 5-165 (669)
105 PF06668 ITI_HC_C: Inter-alpha 53.5 14 0.00031 37.0 3.6 63 620-690 90-153 (188)
106 PF04597 Ribophorin_I: Ribopho 52.3 1.1E+02 0.0024 34.9 11.0 84 98-197 16-103 (432)
107 COG5047 SEC23 Vesicle coat com 48.7 42 0.0009 38.8 6.6 51 323-375 120-170 (755)
108 PF01601 Corona_S2: Coronaviru 46.3 6.6 0.00014 45.5 0.0 7 696-702 570-576 (610)
109 PRK05434 phosphoglyceromutase; 44.6 1.1E+02 0.0025 35.5 9.6 96 406-503 95-206 (507)
110 TIGR01307 pgm_bpd_ind 2,3-bisp 42.5 1.7E+02 0.0038 33.9 10.6 86 406-492 91-192 (501)
111 KOG2291 Oligosaccharyltransfer 33.3 1.7E+02 0.0036 34.0 8.2 96 87-196 34-132 (602)
112 KOG1924 RhoA GTPase effector D 32.5 57 0.0012 39.1 4.6 12 56-67 563-574 (1102)
113 PF01882 DUF58: Protein of unk 30.3 63 0.0014 27.4 3.6 40 325-364 40-85 (86)
114 TIGR03820 lys_2_3_AblA lysine- 27.7 5.5E+02 0.012 29.1 11.3 48 479-526 288-335 (417)
115 PF01601 Corona_S2: Coronaviru 25.2 24 0.00051 41.1 0.0 12 737-748 577-588 (610)
116 PF10633 NPCBM_assoc: NPCBM-as 24.6 1.4E+02 0.0031 24.8 4.7 32 180-211 43-74 (78)
117 PF08496 Peptidase_S49_N: Pept 22.9 1.3E+02 0.0028 29.2 4.6 44 325-368 96-139 (155)
118 KOG0071 GTP-binding ADP-ribosy 22.8 1.3E+02 0.0028 28.8 4.3 31 325-358 85-115 (180)
119 KOG0070 GTP-binding ADP-ribosy 22.0 3.4E+02 0.0073 27.1 7.3 43 326-372 86-128 (181)
120 KOG4513 Phosphoglycerate mutas 20.7 1.2E+02 0.0027 33.3 4.2 46 421-466 123-168 (531)
121 PLN02538 2,3-bisphosphoglycera 20.2 7.5E+02 0.016 29.2 10.7 60 406-468 114-174 (558)
No 1
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=100.00 E-value=4.1e-80 Score=720.39 Aligned_cols=528 Identities=22% Similarity=0.374 Sum_probs=437.9
Q ss_pred eeEEEEEEEEEeeeeEEEEEEEEEecccCCCceeEEEEEeecCCCceEEEEEEEECCEEEEEEEEeehHHHHHHHhccc-
Q 004469 86 MHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYKENVGKS- 164 (751)
Q Consensus 86 ~~~v~~~V~~~~~~A~vtv~q~f~N~~~~~~~~~E~~y~FPLp~~a~V~gf~~~i~gk~i~g~V~eke~A~~~~~~a~~- 164 (751)
+++|+++|.|.+ |+|+++|+|.| ++++++||.|+||||++|+|++|+|+||||+|+|+|+||++|++.|+.+++
T Consensus 2 ~~~v~~~V~g~~--A~v~v~q~f~N---~~~~~~E~~y~fPLp~~aaV~~f~~~i~~r~i~g~v~eKe~A~~~Ye~a~~~ 76 (596)
T TIGR03788 2 DTDANITVTGLI--ARTEVTQTFRN---PSQFWVEGRYVFPLPENAAVDSLTMHIGERVIVGQIMPKAAARAIYEQAKAE 76 (596)
T ss_pred CceEEEEEEcce--EEEEEEEEEEC---CCCCcEEEEEEeeCCCCcEEEEEEEEECCEEEEEEEeeHHHHHHHHHHHHHh
Confidence 578999999985 89999999999 578999999999999999999999999999999999999999976665554
Q ss_pred cCCccce---ecCcEEEEecCCCCCCEEEEEEEEEEeeeeccCeEEEEEEEec-ceeecCCCC----------------C
Q 004469 165 KGDGRYL---KGQIYTLRIPQVDGGSTLSIKVNWSQKLTYEEGQFCLSVPFTF-PAYVIPLGR----------------K 224 (751)
Q Consensus 165 ~~d~alL---~~n~F~~~VgnIppg~~v~I~I~Y~q~L~~~~g~~~~~lpf~l-P~~v~P~~~----------------~ 224 (751)
+++++|+ ++|+|+++|||||||++++|+|+|+|+|.+++|.|+|++|+++ |+|..+... .
T Consensus 77 G~~a~Lleq~~~~~F~~~V~nIpp~~~v~i~l~Y~q~L~~~~g~~~~~lP~~~~pry~~~~~~~~~~~~~~~~~~~~~~~ 156 (596)
T TIGR03788 77 GKKAALVEQQRPNLFTNKVANIGPGETVVVTIEYQQPVSYSSGTFSLRLPLTVTPRYIPGSTVNTVTDVNNSGWAIPTTQ 156 (596)
T ss_pred ccceeeeecccCCceeEEeeccCCCCEEEEEEEEEEEeeecCCEEEEEeeeeecCCccCCcccccccccccccccccccc
Confidence 5667887 6999999999999999999999999999999999986665554 443211000 0
Q ss_pred C-------------------CCcceEEEEEEcCcceeeeeccCCCcceeeecccceEEEeeccccccccCCCcEEEEEEc
Q 004469 225 I-------------------PKSEKIILNVNSGVSEQIVGKCSSHPLKELSREVGKLSFSYEAEVKRWSNSDFKFSYTVA 285 (751)
Q Consensus 225 ~-------------------~~~~~i~l~v~~~~~~~i~i~s~sh~i~~~~~~~~~~~~~~~~~~~~~~~~Df~l~~~v~ 285 (751)
+ ..+..++++++.+.+. ..+.|++|+++..+...+...++++.. ..++++||+|.|.+.
T Consensus 157 ~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~i-~~i~s~~h~i~~~~~~~~~~~v~l~~~-~~~~d~Df~l~~~~~ 234 (596)
T TIGR03788 157 VPDADKISAPRVLDPDDDAPSSQASINVDLNAGLPL-DSITSPSHPIQIEQQGQSGYTISLAQG-QVIADRDFVLTWRPA 234 (596)
T ss_pred cccccccCCccccCcccCCCCcceEEEEEecCCCcc-ceeeCCCCceEeecCCCceEEEEeCCC-CcCCCCCEEEEEEeC
Confidence 0 0123344444443332 157899999988766655566666543 358999999999997
Q ss_pred ccCCcccEEEeCCCCCCCCCcceEEEEEeCCCC-CCCCCCCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCCCCcEE
Q 004469 286 STDLFGGVLLQSPSLHDFDQRQIFCLYLFPGKS-QSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFN 364 (751)
Q Consensus 286 ~~~~~~~v~~~~~~~~~~d~~~~f~l~l~P~~~-~~~~~~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~~d~f~ 364 (751)
..+. +.+++... ..++.+||++++.|+.. ......|++++||||+||||.|.+++.+|+++..+++.|+++|+|+
T Consensus 235 ~~~~-p~~~~~~~---~~~~~~y~~~~~~pp~~~~~~~~~p~~vvfvlD~SgSM~g~~i~~ak~al~~~l~~L~~~d~~~ 310 (596)
T TIGR03788 235 QGEA-PSAALFRE---QIGGERYGLAMVMPPTEAAVAQVLPRELVFVIDTSGSMAGESIEQAKSALLLALDQLRPGDRFN 310 (596)
T ss_pred CCCC-ceEEEEEE---ccCCCcEEEEEEeCCCccccccCCCceEEEEEECCCCCCCccHHHHHHHHHHHHHhCCCCCEEE
Confidence 6553 34333211 12456789999988763 2345678999999999999999999999999999999999999999
Q ss_pred EEEeCCceEEeeccccccCHhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcC-CCCccEEEEEecCCCCChhhHHHH
Q 004469 365 IIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDT-SESIPLIFLITDGTVGDERGICNE 443 (751)
Q Consensus 365 Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a~GgT~l~~aL~~A~~~l~~~-~~~~~~IiLlTDG~~~~~~~i~~~ 443 (751)
|+.|++++..+.+....++..+++++.++|+++.++|||+|+.+|+.|++..... .+..+.|||||||.++++..+.+.
T Consensus 311 ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~GgT~l~~aL~~a~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~ 390 (596)
T TIGR03788 311 IIQFDSDVTLLFPVPVPATAHNLARARQFVAGLQADGGTEMAGALSAALRDDGPESSGALRQVVFLTDGAVGNEDALFQL 390 (596)
T ss_pred EEEECCcceEeccccccCCHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHhhcccCCCceeEEEEEeCCCCCCHHHHHHH
Confidence 9999999998877777889999999999999999999999999999999874322 345679999999999888777777
Q ss_pred HHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHHhCCCEEEEeCCCccHHHHHHHHHHHhccceEeeEEEEeecCCCcee
Q 004469 444 IKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETSKHLNSLE 523 (751)
Q Consensus 444 v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~~ggG~~~~i~~~~~l~~~l~~~l~~~~~p~l~di~l~~~~~~~~~e 523 (751)
++... ...|||+||||+++|.++|+.||+.|+|.|.++.+.++++.+|.+++.++.+|+++|++++|.. ....+
T Consensus 391 ~~~~~-----~~~ri~tvGiG~~~n~~lL~~lA~~g~G~~~~i~~~~~~~~~~~~~l~~~~~p~l~~v~v~~~~-~~~~~ 464 (596)
T TIGR03788 391 IRTKL-----GDSRLFTVGIGSAPNSYFMRKAAQFGRGSFTFIGSTDEVQRKMSQLFAKLEQPALTDIALTFDN-GNAAD 464 (596)
T ss_pred HHHhc-----CCceEEEEEeCCCcCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHHHHhhcCeEEEEEEEEEcC-Cccce
Confidence 65432 2479999999999999999999999999999999999999999999999999999999999963 45678
Q ss_pred ecCCCCCcccCCCcEEEEEEEcCCCCcEEEEEEEecCcceEEEEEeccc-cCCCchhHHHHHHHHHHHHHhhhh-ccCHH
Q 004469 524 LFPSHIPDFCLECPLIVSGRYSGNFGDSVQVSGTMADTSNFIIELKAQN-AKDIPLDRLLARRQIEILTAQAWF-SESKE 601 (751)
Q Consensus 524 v~p~~ip~l~~g~~l~v~G~~~g~~~~~v~l~g~~~~~~~~~~~l~~~~-~~~~~l~~lwA~~~I~~L~~~~~~-~~~~~ 601 (751)
++|..+|+||.|++++|+|++ +..+..++++|+.+++. |+.++++.. ..+..|++|||+++|++|+++.|. .+.++
T Consensus 465 v~P~~~p~L~~g~~l~v~g~~-~~~~~~i~v~g~~~~~~-~~~~~~~~~~~~~~~l~~lwA~~~I~~L~~~~~~~~~~~~ 542 (596)
T TIGR03788 465 VYPSPIPDLYRGEPLQIAIKL-QQAAGELQLTGRTGSQP-WSQQLDLDSAAPGKGIDKLWARRKIDSLEDSLRYGANEEK 542 (596)
T ss_pred eccCCCccccCCCEEEEEEEe-cCCCCeEEEEEEcCCce-EEEEEecCCCCCcchHHHHHHHHHHHHHHHHHhhcCCcHH
Confidence 999999999999999999996 45678999999988874 888888764 345679999999999999987664 34567
Q ss_pred HHHHHHHHHHhhCCCCccceEEEEeCCCCCC
Q 004469 602 LEEKVAKMSIQTGVPSEYTCMILFPSGSKTS 632 (751)
Q Consensus 602 ~k~eii~LS~~y~ivS~~TS~vave~~~~~~ 632 (751)
++++|++||++|+|+|+||||||||++...+
T Consensus 543 ~~~~Ii~Lsl~y~lvT~~TS~vave~~~~~~ 573 (596)
T TIGR03788 543 VKDQVTALALNHHLVSPFTSFVAVEETPIRP 573 (596)
T ss_pred HHHHHHHHHHHhCCCCcceeEEEEecccccC
Confidence 8999999999999999999999999976665
No 2
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=99.93 E-value=3.5e-25 Score=214.69 Aligned_cols=153 Identities=39% Similarity=0.541 Sum_probs=137.6
Q ss_pred ceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCC-CCCCc
Q 004469 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA-GGGTN 404 (751)
Q Consensus 326 ~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a-~GgT~ 404 (751)
.+++||||+|+||.|.+ +.+|+++..++++|+++|+|||+.|+++...|.+.+.+++.++++++++||+.+.+ .|+|+
T Consensus 1 ~~vvilvD~S~Sm~g~~-~~~k~al~~~l~~L~~~d~fnii~f~~~~~~~~~~~~~~~~~~~~~a~~~I~~~~~~~G~t~ 79 (155)
T PF13768_consen 1 ADVVILVDTSGSMSGEK-ELVKDALRAILRSLPPGDRFNIIAFGSSVRPLFPGLVPATEENRQEALQWIKSLEANSGGTD 79 (155)
T ss_pred CeEEEEEeCCCCCCCcH-HHHHHHHHHHHHhCCCCCEEEEEEeCCEeeEcchhHHHHhHHHHHHHHHHHHHhcccCCCcc
Confidence 47999999999999999 99999999999999999999999999999988888899999999999999999999 79999
Q ss_pred hHHHHHHHHHHhhcCCCCccEEEEEecCCC-CChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHHhCCCEE
Q 004469 405 ILLPLKQAIKLLSDTSESIPLIFLITDGTV-GDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYY 483 (751)
Q Consensus 405 l~~aL~~A~~~l~~~~~~~~~IiLlTDG~~-~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~~ggG~~ 483 (751)
+..||+.|+..+. .++..+.|||+|||.+ +.+..+.+.+++.. .++|||+||+|...+..+|+.||+.++|.|
T Consensus 80 l~~aL~~a~~~~~-~~~~~~~IilltDG~~~~~~~~i~~~v~~~~-----~~~~i~~~~~g~~~~~~~L~~LA~~~~G~~ 153 (155)
T PF13768_consen 80 LLAALRAALALLQ-RPGCVRAIILLTDGQPVSGEEEILDLVRRAR-----GHIRIFTFGIGSDADADFLRELARATGGSF 153 (155)
T ss_pred HHHHHHHHHHhcc-cCCCccEEEEEEeccCCCCHHHHHHHHHhcC-----CCceEEEEEECChhHHHHHHHHHHcCCCEE
Confidence 9999999999862 3467889999999996 55566776666432 458999999999999999999999999999
Q ss_pred EE
Q 004469 484 DS 485 (751)
Q Consensus 484 ~~ 485 (751)
.|
T Consensus 154 ~f 155 (155)
T PF13768_consen 154 HF 155 (155)
T ss_pred EC
Confidence 75
No 3
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=99.92 E-value=2.5e-23 Score=225.01 Aligned_cols=448 Identities=17% Similarity=0.159 Sum_probs=235.1
Q ss_pred ccccceeeEEEEEEEEEeeeeEEEEEEEEEecccCCCceeEEEEEeecCCCceEEEEEEEECCEEEEE---EEEeehHHH
Q 004469 80 ALIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQS---KLISLDDAE 156 (751)
Q Consensus 80 ~~vpL~~~~v~~~V~~~~~~A~vtv~q~f~N~~~~~~~~~E~~y~FPLp~~a~V~gf~~~i~gk~i~g---~V~eke~A~ 156 (751)
..|-|.+++|+++|.+. .|+|+++|+|+|| +++++|+.|.||||++|+|++|+|+++|+...+ +++||++||
T Consensus 412 kaV~L~Sh~VtVeIeg~--iA~TEIEqTF~NP---N~r~LEGElsFPLPEgAtVTGyALdvdGkL~Daw~~VVVEKEKAR 486 (952)
T TIGR02921 412 KKVLIANMAITVEEHGD--NADIEIVETLENQ---TPENHEVFFHFSLPEEAAITGLWLGDDAKDDDKFAFALAPRGAAQ 486 (952)
T ss_pred CceeEeeeeEEEEEECC--eEEEEEEEEEECC---CCCceeEEEEecCCCCCeeeeeeecCCccccccccceeccHHHHH
Confidence 46778999999999987 5899999999995 799999999999999999999999999999988 999999999
Q ss_pred H-HHHhcccc--CCccce---ecCcEEEEecCCCCCCEEEEEEEEEEeeeeccCe----EEEEEEEecceeecCCCC---
Q 004469 157 Y-KENVGKSK--GDGRYL---KGQIYTLRIPQVDGGSTLSIKVNWSQKLTYEEGQ----FCLSVPFTFPAYVIPLGR--- 223 (751)
Q Consensus 157 ~-~~~~a~~~--~d~alL---~~n~F~~~VgnIppg~~v~I~I~Y~q~L~~~~g~----~~~~lpf~lP~~v~P~~~--- 223 (751)
+ ||++.+++ .|+||+ .+|.|++|||||||..- .|..-+..-.|+ -++.+.|.+-+..+..+.
T Consensus 487 QVYEdevRQGrpiDPALLEK~~gN~FriRVYPIPPr~a-----nyn~~~~~i~g~~~~~~~m~l~~~yk~~~~d~gaw~l 561 (952)
T TIGR02921 487 KVYNDEVQQERPIDPALLEQVGPRHYRLRAFPIPPRRA-----NYNNNMGLIEGQDPEPDEMNLTFEYKTLGNDKGAWAL 561 (952)
T ss_pred HHHHHHHHhcCCCCchhheeccCCeeeEEEccCCcccc-----ccccchhhhcCCCCCCCcceEEEEEEeeccCCCcccC
Confidence 5 66666776 599998 58999999999999431 111111000110 001111221111111000
Q ss_pred -CCCCcceEEEEEEcCcceeeeeccCCCcceeeecccceEEEeeccccccccCCCcEEEEEEcccCCcccEEEeCCCCCC
Q 004469 224 -KIPKSEKIILNVNSGVSEQIVGKCSSHPLKELSREVGKLSFSYEAEVKRWSNSDFKFSYTVASTDLFGGVLLQSPSLHD 302 (751)
Q Consensus 224 -~~~~~~~i~l~v~~~~~~~i~i~s~sh~i~~~~~~~~~~~~~~~~~~~~~~~~Df~l~~~v~~~~~~~~v~~~~~~~~~ 302 (751)
+...+.++. .|...+.++ +...+.|.-+ .|+..-...+ ... .|..++
T Consensus 562 p~l~ekrn~~---------------ws~qt~r~~-n~~~i~~~~~----awl~~~~~~s-----~~~-------~~~~h~ 609 (952)
T TIGR02921 562 PDLGEKRNAF---------------WSDQTKRIL-NDKEIGFEED----AWLEEFAPAS-----AAA-------PPALHD 609 (952)
T ss_pred chhhhhhcch---------------hcchhhhhc-CCCccccccc----cchhhhchhh-----ccC-------Chhhhh
Confidence 000000000 011111000 1111222211 1221100000 000 000111
Q ss_pred C-CCcceEEEEEeCCCCC----CCCCCCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCceEEeec
Q 004469 303 F-DQRQIFCLYLFPGKSQ----SRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSS 377 (751)
Q Consensus 303 ~-d~~~~f~l~l~P~~~~----~~~~~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~ 377 (751)
. -+.|+= +.-.|.... ..+.....+.+++|.|.|| |+.+....++++.+- ++.-.| ++..-++......-
T Consensus 610 ~~~d~g~k-i~a~p~s~~daq~~i~k~t~~~ai~id~s~sm-ge~~~~~t~~l~~l~-q~~~a~--~~~~~~~~~~~is~ 684 (952)
T TIGR02921 610 ASLDAGQK-ILAKPLSGADAQWDIPKNTQPVAILIDGSRSM-GEHAGELTQALKQLK-QHDFAD--EDFLCNDACLSISA 684 (952)
T ss_pred hhhccCce-eecccCCCCCcccccCCCCceeEEEEecchhH-HHHHHHHHHHHHHHH-hcCcch--hhhhcchhceeeec
Confidence 0 011111 111222111 0112235689999999999 455555555554432 222110 12222333222221
Q ss_pred cccccCHhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCe
Q 004469 378 SMKLASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPR 457 (751)
Q Consensus 378 ~~~~~t~~~i~~a~~~I~~l~a~GgT~l~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~r 457 (751)
...+++..++...++-..-.+-.|+-+..-+..+++.++.. .....|+|+||...-. +.++.+........
T Consensus 685 -~p~a~ptrldnlqqfqpekv~fyg~~~p~~~la~~~~lk~~-~~ydav~llsd~gsye-------l~~~~~~~~~~~~p 755 (952)
T TIGR02921 685 -PPGADPTRLDNLQQFQPEKVAFYGDILPMEMLAAFNNLKGD-QAYDAVLLLSDAGSYE-------LEKNFKLKAAQMAP 755 (952)
T ss_pred -CCCCCccccchhhhcCchhheeecccchHHHHHHHhccccc-cccceEEEeccCcchh-------hhhccccccCCCCc
Confidence 12244444444433322222335665544455566665543 3457899999976421 11111111223456
Q ss_pred EEEEEecC----CCCHHHHHHHHHhCCCEEEEeCCCccHHHHH--HHHHHHhccceEeeEEEEeecCCCceeecCCCCCc
Q 004469 458 ICTFGVGL----YCNHYFLQILAQIGRGYYDSAYDPGSVDYRI--RRFFTAASSVFLTNMTLETSKHLNSLELFPSHIPD 531 (751)
Q Consensus 458 Ift~GiG~----~~n~~lL~~LA~~ggG~~~~i~~~~~l~~~l--~~~l~~~~~p~l~di~l~~~~~~~~~ev~p~~ip~ 531 (751)
+.-+-+|. ..+...++.|-..+||.... +.+.+ .++-.+. ..+-. .+.|.-
T Consensus 756 ~wlvhlg~tl~~ay~d~~i~~l~~s~ggva~~------i~e~iaa~~~~~k~----~~~~~--------~~~v~~----- 812 (952)
T TIGR02921 756 LWLVHLGETLAGAYHDGIIDLLKDSGGGVALD------IAEAIAAHQFAQKR----ALDDG--------LFAVTN----- 812 (952)
T ss_pred eEEEecCccccccccchHHHHHHhcCCCeEee------HHHHHHHHHHHHHh----hcCCc--------eEEEec-----
Confidence 77777775 34667899999999998864 33333 2222111 11100 011110
Q ss_pred ccCCCcEEEEEEEcCCCCcEEEEEEEecCcceEEEEEeccccCCCchhHHHHHHHHHHHHHhhhhccCHHHHHHHHHHHH
Q 004469 532 FCLECPLIVSGRYSGNFGDSVQVSGTMADTSNFIIELKAQNAKDIPLDRLLARRQIEILTAQAWFSESKELEEKVAKMSI 611 (751)
Q Consensus 532 l~~g~~l~v~G~~~g~~~~~v~l~g~~~~~~~~~~~l~~~~~~~~~l~~lwA~~~I~~L~~~~~~~~~~~~k~eii~LS~ 611 (751)
-|.+|.....+ .+. -+.-.+..+-.++.++||+.|..|..+.-+++-+.+ .+|..+++
T Consensus 813 --------~y~wy~~~gad--------~~~-----~~s~~~~~~d~~~aiaar~~i~~la~~~~~~~~k~l-d~ihaiak 870 (952)
T TIGR02921 813 --------GYAWYAEAGAD--------ADA-----ALSNAKQEADFFPAIAARQLIEGLAKQIDLDDLKSL-DAIHAIAK 870 (952)
T ss_pred --------chhHHHhhccc--------HHH-----HhhcccchhhhhHHHHHHHHHHHHHhhcCchhhhhh-HHHHHHHH
Confidence 02233221100 000 000011223357889999999999877555544444 56999999
Q ss_pred hhCCCCccceEEEEeCC
Q 004469 612 QTGVPSEYTCMILFPSG 628 (751)
Q Consensus 612 ~y~ivS~~TS~vave~~ 628 (751)
+|+|||+|.|||++-++
T Consensus 871 ~~~ivs~yssmivlv~~ 887 (952)
T TIGR02921 871 AEHIVSDYSSMIVLVED 887 (952)
T ss_pred hhhccCcchheEEEecH
Confidence 99999999999998663
No 4
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=99.91 E-value=2.5e-23 Score=204.32 Aligned_cols=170 Identities=39% Similarity=0.598 Sum_probs=148.7
Q ss_pred CCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCCCCCC
Q 004469 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGT 403 (751)
Q Consensus 324 ~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a~GgT 403 (751)
.|++++||||+||||.|.+++.+|+++..++..|+++++|+|+.|+++...+.+.....+..++.++++++..+.++|+|
T Consensus 1 ~~~~v~~vlD~S~SM~~~~~~~~~~al~~~l~~l~~~~~~~l~~Fs~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~T 80 (171)
T cd01461 1 LPKEVVFVIDTSGSMSGTKIEQTKEALLTALKDLPPGDYFNIIGFSDTVEEFSPSSVSATAENVAAAIEYVNRLQALGGT 80 (171)
T ss_pred CCceEEEEEECCCCCCChhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCceeecCcceeCCHHHHHHHHHHHHhcCCCCCc
Confidence 37899999999999999999999999999999999999999999999987766544556778899999999999999999
Q ss_pred chHHHHHHHHHHhhcCCCCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHHhCCCEE
Q 004469 404 NILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYY 483 (751)
Q Consensus 404 ~l~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~~ggG~~ 483 (751)
++..+|..|++.+...++..+.||++|||..++..++.+.+++.. ..+++||+||+|...+..+|+.||+.++|.|
T Consensus 81 ~l~~al~~a~~~l~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~----~~~i~i~~i~~g~~~~~~~l~~ia~~~gG~~ 156 (171)
T cd01461 81 NMNDALEAALELLNSSPGSVPQIILLTDGEVTNESQILKNVREAL----SGRIRLFTFGIGSDVNTYLLERLAREGRGIA 156 (171)
T ss_pred CHHHHHHHHHHhhccCCCCccEEEEEeCCCCCCHHHHHHHHHHhc----CCCceEEEEEeCCccCHHHHHHHHHcCCCeE
Confidence 999999999999875445678999999999877766666665542 2368999999999999999999999999999
Q ss_pred EEeCCCccHHHHHH
Q 004469 484 DSAYDPGSVDYRIR 497 (751)
Q Consensus 484 ~~i~~~~~l~~~l~ 497 (751)
.++.+.+++++++.
T Consensus 157 ~~~~~~~~~~~~~~ 170 (171)
T cd01461 157 RRIYETDDIESQLL 170 (171)
T ss_pred EEecChHHHHHHhc
Confidence 99999999988764
No 5
>PF08487 VIT: Vault protein inter-alpha-trypsin domain; InterPro: IPR013694 Inter-alpha-trypsin inhibitors (ITIs) consist of one light chain and a variable set of heavy chains. ITIs play a role in extracellular matrix (ECM) stabilisation and tumour metastasis as well as in plasma protease inhibition []. The vault protein inter-alpha-trypsin (VIT) domain described here is found to the N terminus of a von Willebrand factor type A domain (IPR002035 from INTERPRO) in ITI heavy chains (ITIHs) and their precursors.
Probab=99.91 E-value=1.7e-23 Score=193.36 Aligned_cols=111 Identities=14% Similarity=0.272 Sum_probs=100.7
Q ss_pred cccceeeEEEEEEEEEeeeeEEEEEEEEEecccCCCceeEEEEEeecCCCceEEEEEEEECCEEEEEEEEeehHHHHHHH
Q 004469 81 LIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYKEN 160 (751)
Q Consensus 81 ~vpL~~~~v~~~V~~~~~~A~vtv~q~f~N~~~~~~~~~E~~y~FPLp~~a~V~gf~~~i~gk~i~g~V~eke~A~~~~~ 160 (751)
.+||++++|+++|.+.+ |+|+++|+|.| ++++++|+.|.||||++|+|++|+|+||||+|.|+|+||++|+..|+
T Consensus 2 ~~~l~s~~v~~~I~~~~--a~t~v~q~f~N---~~~~~~E~~y~fpLp~~A~i~~f~~~i~g~~i~g~v~ek~~A~~~y~ 76 (118)
T PF08487_consen 2 QVPLKSVHVKVTIIDRF--ARTTVTQTFEN---PSSEPLEAVYSFPLPEGAAISGFSMWIGGRTIEGEVKEKEEAKQEYE 76 (118)
T ss_pred CceEEEEEEEEEEEccE--EEEEEEEEEEC---CCCCcEEEEEEeECCCCeEEEEEEEEECCEEEEEEEecHHHHHHHHH
Confidence 57899999999999874 89999999999 58899999999999999999999999999999999999999997666
Q ss_pred hcc-ccCCccce---ecCc--EEEEecCCCCCCEEEEEEEEEE
Q 004469 161 VGK-SKGDGRYL---KGQI--YTLRIPQVDGGSTLSIKVNWSQ 197 (751)
Q Consensus 161 ~a~-~~~d~alL---~~n~--F~~~VgnIppg~~v~I~I~Y~q 197 (751)
.++ ++.+++|| +++. |+++| |||||++++|+|+|+|
T Consensus 77 ~a~~~g~~a~lle~~~~~~~~F~~~v-ni~p~~~v~i~l~Y~e 118 (118)
T PF08487_consen 77 EAVAQGKSAALLEQSDPNVEVFTVSV-NIPPNEEVTIELTYVE 118 (118)
T ss_pred HHHHcCCCchhhcccCCCCcEEEEEE-EeCCCCEEEEEEEEEC
Confidence 554 55677787 4677 99999 9999999999999986
No 6
>smart00609 VIT Vault protein Inter-alpha-Trypsin domain.
Probab=99.90 E-value=3.2e-23 Score=193.33 Aligned_cols=113 Identities=16% Similarity=0.223 Sum_probs=102.4
Q ss_pred CccccceeeEEEEEEEEEeeeeEEEEEEEEEecccCCCceeEEEEEeecCCCceEEEEEEEECCEEEEEEEEeehHHHHH
Q 004469 79 PALIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYK 158 (751)
Q Consensus 79 ~~~vpL~~~~v~~~V~~~~~~A~vtv~q~f~N~~~~~~~~~E~~y~FPLp~~a~V~gf~~~i~gk~i~g~V~eke~A~~~ 158 (751)
...+||++++|+++|.+.+ |+|+++|+|.|+ ++.+.|+.|.||||++|+|++|+|+||||+|.|+|+||++||+.
T Consensus 12 ~~~~pL~s~~v~~~I~~~~--a~t~vtq~f~N~---~~~~~e~~~~~~lp~~A~v~~~~~~i~~r~i~g~vkeK~~Ar~~ 86 (130)
T smart00609 12 VNGVPLYSLKVNSKVTSRF--AHTVVTSRVVNR---AVPAQEVTFDVELPKTAFISNFAMTIDGKTYVGEIKEKEVAQKQ 86 (130)
T ss_pred CCccceEEEEEEEEEECCE--EEEEEEEEEECC---CCCceEEEEEcCCCCCcEEEeEEEEECCEEEEEEEeeHHHHHHH
Confidence 4589999999999999974 899999999995 68899999999999999999999999999999999999999976
Q ss_pred HHhc-cccCCccce---ec--CcEEEEecCCCCCCEEEEEEEEEE
Q 004469 159 ENVG-KSKGDGRYL---KG--QIYTLRIPQVDGGSTLSIKVNWSQ 197 (751)
Q Consensus 159 ~~~a-~~~~d~alL---~~--n~F~~~VgnIppg~~v~I~I~Y~q 197 (751)
|+.+ .++++++|| ++ |+|+++| |||||++++|+|+|+|
T Consensus 87 Ye~A~~~G~~a~L~eq~~~~~~~F~~~V-NIppg~~v~v~l~Y~e 130 (130)
T smart00609 87 YEKAVSQGKTAGLVRASGRSMEQFTVSV-NVAPGSKVTFELTYEE 130 (130)
T ss_pred HHHHHHcCCCeEEEEecCCccCcEEEEE-EeCCCCEEEEEEEEEC
Confidence 6666 456677788 46 9999999 9999999999999985
No 7
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=99.89 E-value=2.9e-22 Score=201.15 Aligned_cols=165 Identities=30% Similarity=0.367 Sum_probs=136.4
Q ss_pred CCCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCceEEeecc----ccccCHhHHHHHHHHHhcCC
Q 004469 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSS----MKLASQGTIINATQWLSSLV 398 (751)
Q Consensus 323 ~~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~----~~~~t~~~i~~a~~~I~~l~ 398 (751)
..|++++||||+||||.+.+++.+|+++..+++.|+++|+|+|+.|++++..+.+. ....+..+.+.+.++|..+.
T Consensus 11 ~~p~~vv~llD~SgSM~~~~l~~ak~~~~~ll~~l~~~d~v~lv~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 90 (190)
T cd01463 11 TSPKDIVILLDVSGSMTGQRLHLAKQTVSSILDTLSDNDFFNIITFSNEVNPVVPCFNDTLVQATTSNKKVLKEALDMLE 90 (190)
T ss_pred cCCceEEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEEEeCCCeeEEeeecccceEecCHHHHHHHHHHHhhCC
Confidence 46899999999999999999999999999999999999999999999998866442 22345678889999999999
Q ss_pred CCCCCchHHHHHHHHHHhhcC---------CCCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCC-C
Q 004469 399 AGGGTNILLPLKQAIKLLSDT---------SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYC-N 468 (751)
Q Consensus 399 a~GgT~l~~aL~~A~~~l~~~---------~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~-n 468 (751)
++|+|++..||+.|++.+... +...+.|||||||.+++...+....... ......++||+||+|.+. |
T Consensus 91 ~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~--~~~~~~v~i~tigiG~~~~d 168 (190)
T cd01463 91 AKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPENYKEIFDKYNWD--KNSEIPVRVFTYLIGREVTD 168 (190)
T ss_pred CCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCcHhHHHHHhccc--ccCCCcEEEEEEecCCcccc
Confidence 999999999999999988651 1234689999999988765554433211 122346899999999986 9
Q ss_pred HHHHHHHHHhCCCEEEEeCCC
Q 004469 469 HYFLQILAQIGRGYYDSAYDP 489 (751)
Q Consensus 469 ~~lL~~LA~~ggG~~~~i~~~ 489 (751)
..+|+.||..++|.|+++.+.
T Consensus 169 ~~~L~~lA~~~~G~~~~i~~~ 189 (190)
T cd01463 169 RREIQWMACENKGYYSHIQSL 189 (190)
T ss_pred chHHHHHHhhcCCeEEEcccC
Confidence 999999999999999998764
No 8
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=99.86 E-value=9.8e-21 Score=183.77 Aligned_cols=153 Identities=30% Similarity=0.443 Sum_probs=128.1
Q ss_pred ceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCCCCCCch
Q 004469 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNI 405 (751)
Q Consensus 326 ~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a~GgT~l 405 (751)
.+++||||.||||.+.+++.+|+++..+++.|+++++++|+.|+++.+.+.+ +.+.+..+...+.++++.+.++|+|++
T Consensus 1 ~~v~~vlD~S~SM~~~rl~~ak~a~~~l~~~l~~~~~~~li~F~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~g~T~~ 79 (155)
T cd01466 1 VDLVAVLDVSGSMAGDKLQLVKHALRFVISSLGDADRLSIVTFSTSAKRLSP-LRRMTAKGKRSAKRVVDGLQAGGGTNV 79 (155)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcceEEEEEecCCccccCC-CcccCHHHHHHHHHHHHhccCCCCccH
Confidence 3789999999999999999999999999999999999999999998877655 334566677888888999999999999
Q ss_pred HHHHHHHHHHhhcC--CCCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHHhCCCEE
Q 004469 406 LLPLKQAIKLLSDT--SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYY 483 (751)
Q Consensus 406 ~~aL~~A~~~l~~~--~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~~ggG~~ 483 (751)
..||+.+++.+... .+....|||+|||.++.... +.. ....++.+|+||+|...+..+|+.||+.++|.|
T Consensus 80 ~~al~~a~~~~~~~~~~~~~~~iillTDG~~~~~~~----~~~----~~~~~v~v~~igig~~~~~~~l~~iA~~t~G~~ 151 (155)
T cd01466 80 VGGLKKALKVLGDRRQKNPVASIMLLSDGQDNHGAV----VLR----ADNAPIPIHTFGLGASHDPALLAFIAEITGGTF 151 (155)
T ss_pred HHHHHHHHHHHhhcccCCCceEEEEEcCCCCCcchh----hhc----ccCCCceEEEEecCCCCCHHHHHHHHhccCceE
Confidence 99999999998643 23456899999999875411 111 123468999999999999999999999999999
Q ss_pred EEeC
Q 004469 484 DSAY 487 (751)
Q Consensus 484 ~~i~ 487 (751)
+++.
T Consensus 152 ~~~~ 155 (155)
T cd01466 152 SYVK 155 (155)
T ss_pred EEeC
Confidence 9873
No 9
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=99.86 E-value=1.9e-20 Score=183.86 Aligned_cols=165 Identities=22% Similarity=0.303 Sum_probs=131.9
Q ss_pred eEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCCCCCCchH
Q 004469 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNIL 406 (751)
Q Consensus 327 ~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a~GgT~l~ 406 (751)
+++||+|.||||.+.+++.+|+++..++..|+++++++++.|+++...+.+.... .+.+.+.+.|+++.++|+|++.
T Consensus 2 ~~~~vlD~S~SM~~~~~~~~k~a~~~~~~~l~~~~~v~li~f~~~~~~~~~~~~~---~~~~~l~~~l~~~~~~g~T~~~ 78 (170)
T cd01465 2 NLVFVIDRSGSMDGPKLPLVKSALKLLVDQLRPDDRLAIVTYDGAAETVLPATPV---RDKAAILAAIDRLTAGGSTAGG 78 (170)
T ss_pred cEEEEEECCCCCCChhHHHHHHHHHHHHHhCCCCCEEEEEEecCCccEEecCccc---chHHHHHHHHHcCCCCCCCCHH
Confidence 6899999999999999999999999999999999999999999998776543221 2346667778888899999999
Q ss_pred HHHHHHHHHhhcCC--CCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHHhCCCEEE
Q 004469 407 LPLKQAIKLLSDTS--ESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYD 484 (751)
Q Consensus 407 ~aL~~A~~~l~~~~--~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~~ggG~~~ 484 (751)
.+|+.|++.+.... ...+.|||+|||..+......+.+.+.+......+++||+||+|...+..+|+.||+.++|.|+
T Consensus 79 ~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~~~v~i~~i~~g~~~~~~~l~~ia~~~~g~~~ 158 (170)
T cd01465 79 AGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGETDPDELARLVAQKRESGITLSTLGFGDNYNEDLMEAIADAGNGNTA 158 (170)
T ss_pred HHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEEeCCCcCHHHHHHHHhcCCceEE
Confidence 99999999886432 2336899999999864322222333333322345689999999999999999999999999999
Q ss_pred EeCCCccHHH
Q 004469 485 SAYDPGSVDY 494 (751)
Q Consensus 485 ~i~~~~~l~~ 494 (751)
++.+.+++++
T Consensus 159 ~~~~~~~~~~ 168 (170)
T cd01465 159 YIDNLAEARK 168 (170)
T ss_pred EeCCHHHHHh
Confidence 9998887764
No 10
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=99.83 E-value=1.2e-19 Score=183.47 Aligned_cols=168 Identities=20% Similarity=0.231 Sum_probs=127.7
Q ss_pred eEEEEEcCCCCCCCChHHHHHHHHHHHHHhcC---CCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCC-----
Q 004469 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV----- 398 (751)
Q Consensus 327 ~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~----- 398 (751)
+++||||.||||.+.+++.+|+++..+++.|+ .+++++|+.|+++++.+.+. ..+...+...+++.|+.+.
T Consensus 2 di~~vlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~ 80 (198)
T cd01470 2 NIYIALDASDSIGEEDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPKEIVSI-RDFNSNDADDVIKRLEDFNYDDHG 80 (198)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHHHHHccccCCCceEEEEEecCCceEEEec-ccCCCCCHHHHHHHHHhCCccccc
Confidence 79999999999999999999999999999986 37999999999998766543 3334445667777777665
Q ss_pred CCCCCchHHHHHHHHHHhhcC--------CCCccEEEEEecCCCCC---hhhHHHHHHHHhhcc------CCCCCeEEEE
Q 004469 399 AGGGTNILLPLKQAIKLLSDT--------SESIPLIFLITDGTVGD---ERGICNEIKSYLTNT------RSISPRICTF 461 (751)
Q Consensus 399 a~GgT~l~~aL~~A~~~l~~~--------~~~~~~IiLlTDG~~~~---~~~i~~~v~~~~~~~------~~~~~rIft~ 461 (751)
+.|||++..||+.+++.+... ....+.|||||||.++. .....+.+++.+... ...+++||+|
T Consensus 81 ~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~i 160 (198)
T cd01470 81 DKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMGGSPLPTVDKIKNLVYKNNKSDNPREDYLDVYVF 160 (198)
T ss_pred CccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCCCChhHHHHHHHHHHhcccccccchhcceeEEEE
Confidence 358999999999998765211 11245789999999863 233344444443221 2346899999
Q ss_pred EecCCCCHHHHHHHHHhCCC--EEEEeCCCccHHHH
Q 004469 462 GVGLYCNHYFLQILAQIGRG--YYDSAYDPGSVDYR 495 (751)
Q Consensus 462 GiG~~~n~~lL~~LA~~ggG--~~~~i~~~~~l~~~ 495 (751)
|+|+++|...|+.||..++| +++.+.+.+++.+.
T Consensus 161 GvG~~~~~~~L~~iA~~~~g~~~~f~~~~~~~l~~v 196 (198)
T cd01470 161 GVGDDVNKEELNDLASKKDNERHFFKLKDYEDLQEV 196 (198)
T ss_pred ecCcccCHHHHHHHhcCCCCCceEEEeCCHHHHHHh
Confidence 99999999999999999999 57777777666543
No 11
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.82 E-value=2.8e-19 Score=181.83 Aligned_cols=165 Identities=19% Similarity=0.254 Sum_probs=127.3
Q ss_pred CCCCceEEEEEcCCCCCC------CChHHHHHHHHHHHHHhcCCCCcEEEEEeCCceE------Eee---cccccc---C
Q 004469 322 KVFRKDVVFLVDVSGSMQ------GVLLEQTKNALSASLSKLNPQDSFNIIAFNGETH------LFS---SSMKLA---S 383 (751)
Q Consensus 322 ~~~~~~vvfviD~SgSM~------g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~------~~~---~~~~~~---t 383 (751)
...+.+++||||+||||. +.+|+.+|+++..+++.|+++++|+|+.|+++.. ... +..... .
T Consensus 17 ~~~~~~vv~vlD~SgSM~~~~~~~~~rl~~ak~a~~~~l~~l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~~~~~~~~~ 96 (206)
T cd01456 17 PQLPPNVAIVLDNSGSMREVDGGGETRLDNAKAALDETANALPDGTRLGLWTFSGDGDNPLDVRVLVPKGCLTAPVNGFP 96 (206)
T ss_pred cCCCCcEEEEEeCCCCCcCCCCCcchHHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCCccccccccccccccccCCCC
Confidence 346789999999999998 5799999999999999999999999999999532 111 111111 1
Q ss_pred HhHHHHHHHHHhcCC-CCCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCCChhhHHHHHHHHhhcc-CCCCCeEEEE
Q 004469 384 QGTIINATQWLSSLV-AGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNT-RSISPRICTF 461 (751)
Q Consensus 384 ~~~i~~a~~~I~~l~-a~GgT~l~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~-~~~~~rIft~ 461 (751)
..+.+.+.+.|+.+. +.|+|+|..+|+.|.+.+. .+..+.|||+|||..+......+.++...... ...+++||+|
T Consensus 97 ~~~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~--~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~i~i~~i 174 (206)
T cd01456 97 SAQRSALDAALNSLQTPTGWTPLAAALAEAAAYVD--PGRVNVVVLITDGEDTCGPDPCEVARELAKRRTPAPPIKVNVI 174 (206)
T ss_pred cccHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhC--CCCcceEEEEcCCCccCCCCHHHHHHHHHHhcCCCCCceEEEE
Confidence 136677778888888 8899999999999999885 34458999999999876533344444433221 1246899999
Q ss_pred EecCCCCHHHHHHHHHhCCCEE-EEeCC
Q 004469 462 GVGLYCNHYFLQILAQIGRGYY-DSAYD 488 (751)
Q Consensus 462 GiG~~~n~~lL~~LA~~ggG~~-~~i~~ 488 (751)
|||.+.+..+|+.||+.++|.| +.+.+
T Consensus 175 giG~~~~~~~l~~iA~~tgG~~~~~~~~ 202 (206)
T cd01456 175 DFGGDADRAELEAIAEATGGTYAYNQSD 202 (206)
T ss_pred EecCcccHHHHHHHHHhcCCeEeccccc
Confidence 9999999999999999999999 55444
No 12
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=99.76 E-value=2.3e-17 Score=194.28 Aligned_cols=171 Identities=22% Similarity=0.220 Sum_probs=128.0
Q ss_pred CCCCceEEEEEcCCCCCCC-ChHHHHHHHHHHHH-HhcCCCCcEEEEEeCCceEEeeccccccCH-hHHHHHHHHHhcCC
Q 004469 322 KVFRKDVVFLVDVSGSMQG-VLLEQTKNALSASL-SKLNPQDSFNIIAFNGETHLFSSSMKLASQ-GTIINATQWLSSLV 398 (751)
Q Consensus 322 ~~~~~~vvfviD~SgSM~g-~~i~~aK~al~~~L-~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~-~~i~~a~~~I~~l~ 398 (751)
+..++.++||||+||||.+ ++++.+|+|+..++ +.++++|+++|+.|++.+....+. .+.+. ...+...+.+ ...
T Consensus 301 q~~~r~VVLVLDvSGSM~g~dRL~~lkqAA~~fL~~~l~~~DrVGLVtFsssA~vl~pL-t~Its~~dr~aL~~~L-~~~ 378 (863)
T TIGR00868 301 KIRQRIVCLVLDKSGSMTVEDRLKRMNQAAKLFLLQTVEKGSWVGMVTFDSAAYIKNEL-IQITSSAERDALTANL-PTA 378 (863)
T ss_pred ccCCceEEEEEECCccccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEECCceeEeecc-ccCCcHHHHHHHHHhh-ccc
Confidence 3456789999999999986 68999999998765 567889999999999998876553 33443 3344444444 456
Q ss_pred CCCCCchHHHHHHHHHHhhcCC--CCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHH
Q 004469 399 AGGGTNILLPLKQAIKLLSDTS--ESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILA 476 (751)
Q Consensus 399 a~GgT~l~~aL~~A~~~l~~~~--~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA 476 (751)
++|||+|..||+.|++.+.... ...+.|||||||..+........++ ..+++||+||+|.+.+.. |+.||
T Consensus 379 A~GGT~I~~GL~~Alq~L~~~~~~~~~~~IILLTDGedn~~~~~l~~lk-------~~gVtI~TIg~G~dad~~-L~~IA 450 (863)
T TIGR00868 379 ASGGTSICSGLKAAFQVIKKSYQSTDGSEIVLLTDGEDNTISSCFEEVK-------QSGAIIHTIALGPSAAKE-LEELS 450 (863)
T ss_pred cCCCCcHHHHHHHHHHHHHhcccccCCCEEEEEeCCCCCCHHHHHHHHH-------HcCCEEEEEEeCCChHHH-HHHHH
Confidence 8899999999999999997642 2457999999999875544333322 235899999999987654 79999
Q ss_pred HhCCCEEEEeCCCccHHHHHHHHHHHh
Q 004469 477 QIGRGYYDSAYDPGSVDYRIRRFFTAA 503 (751)
Q Consensus 477 ~~ggG~~~~i~~~~~l~~~l~~~l~~~ 503 (751)
+.+||.++++.+.+++.. +.+.|.++
T Consensus 451 ~~TGG~~f~asd~~dl~~-L~dAF~~i 476 (863)
T TIGR00868 451 DMTGGLRFYASDQADNNG-LIDAFGAL 476 (863)
T ss_pred HhcCCEEEEeCCHHHHHH-HHHHHHHH
Confidence 999999999988765543 33444444
No 13
>PRK13685 hypothetical protein; Provisional
Probab=99.76 E-value=4.1e-17 Score=177.34 Aligned_cols=169 Identities=19% Similarity=0.211 Sum_probs=131.3
Q ss_pred CCceEEEEEcCCCCCCC-----ChHHHHHHHHHHHHHhcCCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCC
Q 004469 324 FRKDVVFLVDVSGSMQG-----VLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV 398 (751)
Q Consensus 324 ~~~~vvfviD~SgSM~g-----~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~ 398 (751)
.+.+++|++|+||||.+ .+++.+|+++..+++.++++|+++++.|+++.....+.. .+.+.....|+.+.
T Consensus 87 ~~~~vvlvlD~S~SM~~~D~~p~RL~~ak~~~~~~l~~l~~~d~vglv~Fa~~a~~~~p~t-----~d~~~l~~~l~~l~ 161 (326)
T PRK13685 87 NRAVVMLVIDVSQSMRATDVEPNRLAAAQEAAKQFADELTPGINLGLIAFAGTATVLVSPT-----TNREATKNAIDKLQ 161 (326)
T ss_pred CCceEEEEEECCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCeEEEEEEcCceeecCCCC-----CCHHHHHHHHHhCC
Confidence 45689999999999986 589999999999999999999999999999987655432 24555666788888
Q ss_pred CCCCCchHHHHHHHHHHhhc--------CCCCccEEEEEecCCCCChh------hHHHHHHHHhhccCCCCCeEEEEEec
Q 004469 399 AGGGTNILLPLKQAIKLLSD--------TSESIPLIFLITDGTVGDER------GICNEIKSYLTNTRSISPRICTFGVG 464 (751)
Q Consensus 399 a~GgT~l~~aL~~A~~~l~~--------~~~~~~~IiLlTDG~~~~~~------~i~~~v~~~~~~~~~~~~rIft~GiG 464 (751)
++|+|++..+|..|++.+.. .....+.|||+|||..+... ...+..+.. . ..+++||++|+|
T Consensus 162 ~~~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a-~---~~gi~i~~Ig~G 237 (326)
T PRK13685 162 LADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTNPDNPRGAYTAARTA-K---DQGVPISTISFG 237 (326)
T ss_pred CCCCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCCCCCcccHHHHHHHH-H---HcCCeEEEEEEC
Confidence 99999999999999988752 12235689999999876321 112222222 2 236899999999
Q ss_pred CC--------------CCHHHHHHHHHhCCCEEEEeCCCccHHHHHHHHHH
Q 004469 465 LY--------------CNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFT 501 (751)
Q Consensus 465 ~~--------------~n~~lL~~LA~~ggG~~~~i~~~~~l~~~l~~~l~ 501 (751)
.. .|...|+.||+.+||.|+.+.+.+++++.+.++-+
T Consensus 238 ~~~g~~~~~g~~~~~~~d~~~L~~iA~~tgG~~~~~~~~~~L~~if~~I~~ 288 (326)
T PRK13685 238 TPYGSVEINGQRQPVPVDDESLKKIAQLSGGEFYTAASLEELRAVYATLQQ 288 (326)
T ss_pred CCCCCcCcCCceeeecCCHHHHHHHHHhcCCEEEEcCCHHHHHHHHHHHHH
Confidence 74 57899999999999999999888777766555533
No 14
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=99.74 E-value=5.7e-17 Score=161.04 Aligned_cols=156 Identities=25% Similarity=0.287 Sum_probs=117.5
Q ss_pred EEEEEcCCCCCCCC-hHHHHHHHHHHHHH-hcCCCCcEEEEEeCCc-eEEeeccccccCHhHHHHHHHHHhcCCCCCCCc
Q 004469 328 VVFLVDVSGSMQGV-LLEQTKNALSASLS-KLNPQDSFNIIAFNGE-THLFSSSMKLASQGTIINATQWLSSLVAGGGTN 404 (751)
Q Consensus 328 vvfviD~SgSM~g~-~i~~aK~al~~~L~-~L~~~d~f~Ii~F~~~-~~~~~~~~~~~t~~~i~~a~~~I~~l~a~GgT~ 404 (751)
++|++|+||||.+. +++.+|+++..++. .+.++|+++|+.|+++ .....+.. .+...+.++++.+.++|+|+
T Consensus 3 v~lvlD~SgSM~~~~rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~~~~~~~~~t-----~~~~~~~~~l~~l~~~G~T~ 77 (178)
T cd01451 3 VIFVVDASGSMAARHRMAAAKGAVLSLLRDAYQRRDKVALIAFRGTEAEVLLPPT-----RSVELAKRRLARLPTGGGTP 77 (178)
T ss_pred EEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEeCCC-----CCHHHHHHHHHhCCCCCCCc
Confidence 78999999999987 99999999999886 4578999999999875 44433321 23455667788888899999
Q ss_pred hHHHHHHHHHHh-hcC--CCCccEEEEEecCCCCChh----hHHHHHHHHhhccCCCCCeEEEEEecCC-CCHHHHHHHH
Q 004469 405 ILLPLKQAIKLL-SDT--SESIPLIFLITDGTVGDER----GICNEIKSYLTNTRSISPRICTFGVGLY-CNHYFLQILA 476 (751)
Q Consensus 405 l~~aL~~A~~~l-~~~--~~~~~~IiLlTDG~~~~~~----~i~~~v~~~~~~~~~~~~rIft~GiG~~-~n~~lL~~LA 476 (751)
+..+|..+++.+ ... .+..+.|||+|||..+... .....+.+.+. ..++.+++||+|.+ .+..+|+.||
T Consensus 78 l~~aL~~a~~~l~~~~~~~~~~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~---~~gi~v~~I~~~~~~~~~~~l~~iA 154 (178)
T cd01451 78 LAAGLLAAYELAAEQARDPGQRPLIVVITDGRANVGPDPTADRALAAARKLR---ARGISALVIDTEGRPVRRGLAKDLA 154 (178)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCCCchhHHHHHHHHHHH---hcCCcEEEEeCCCCccCccHHHHHH
Confidence 999999999987 211 2335799999999976321 12122222222 33578999999874 5788999999
Q ss_pred HhCCCEEEEeCCCcc
Q 004469 477 QIGRGYYDSAYDPGS 491 (751)
Q Consensus 477 ~~ggG~~~~i~~~~~ 491 (751)
+.+||.|+++.+.+.
T Consensus 155 ~~tgG~~~~~~d~~~ 169 (178)
T cd01451 155 RALGGQYVRLPDLSA 169 (178)
T ss_pred HHcCCeEEEcCcCCH
Confidence 999999999988753
No 15
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.74 E-value=1.1e-16 Score=158.96 Aligned_cols=161 Identities=25% Similarity=0.253 Sum_probs=122.0
Q ss_pred CceEEEEEcCCCCCCCC------hHHHHHHHHHHHHHhcCCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCC
Q 004469 325 RKDVVFLVDVSGSMQGV------LLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV 398 (751)
Q Consensus 325 ~~~vvfviD~SgSM~g~------~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~ 398 (751)
..+++|++|.|+||... +++.+|.++..++... ++++++|+.|+++.....+.. .+...+.++++.+....
T Consensus 2 ~~~vv~vlD~S~SM~~~~~~~~~r~~~a~~~~~~~~~~~-~~~~v~lv~f~~~~~~~~~~~--~~~~~~~~~l~~l~~~~ 78 (180)
T cd01467 2 GRDIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFIDRR-ENDRIGLVVFAGAAFTQAPLT--LDRESLKELLEDIKIGL 78 (180)
T ss_pred CceEEEEEECCcccccccCCCCCHHHHHHHHHHHHHHhC-CCCeEEEEEEcCCeeeccCCC--ccHHHHHHHHHHhhhcc
Confidence 46899999999999743 6789999998888764 689999999999877654321 24455556666665545
Q ss_pred CCCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecC-----------CC
Q 004469 399 AGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGL-----------YC 467 (751)
Q Consensus 399 a~GgT~l~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~-----------~~ 467 (751)
.+|+|++..+|..+++++.......+.|||+|||..+........+.+.+. ..+++||+||+|. ..
T Consensus 79 ~~g~T~l~~al~~a~~~l~~~~~~~~~iiliTDG~~~~g~~~~~~~~~~~~---~~gi~i~~i~ig~~~~~~~~~~~~~~ 155 (180)
T cd01467 79 AGQGTAIGDAIGLAIKRLKNSEAKERVIVLLTDGENNAGEIDPATAAELAK---NKGVRIYTIGVGKSGSGPKPDGSTIL 155 (180)
T ss_pred cCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCCHHHHHHHHH---HCCCEEEEEEecCCCCCcCCCCcccC
Confidence 679999999999999998765555679999999987643221222222222 2358999999998 47
Q ss_pred CHHHHHHHHHhCCCEEEEeCCCcc
Q 004469 468 NHYFLQILAQIGRGYYDSAYDPGS 491 (751)
Q Consensus 468 n~~lL~~LA~~ggG~~~~i~~~~~ 491 (751)
+...|+.||+.++|.|+++.++++
T Consensus 156 ~~~~l~~la~~tgG~~~~~~~~~~ 179 (180)
T cd01467 156 DEDSLVEIADKTGGRIFRALDGFE 179 (180)
T ss_pred CHHHHHHHHHhcCCEEEEecCccc
Confidence 889999999999999999987764
No 16
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.73 E-value=4.6e-17 Score=161.36 Aligned_cols=141 Identities=26% Similarity=0.362 Sum_probs=108.2
Q ss_pred CceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCC------CCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCC
Q 004469 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP------QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV 398 (751)
Q Consensus 325 ~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~------~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~ 398 (751)
+.+++||||+||||.+.+++.+|+++..+++.|.+ +++++|+.|+++++...+... .. + ..+..+.
T Consensus 3 ~~~v~~llD~SgSM~~~~~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~~~~~l~~-~~--~-----~~~~~l~ 74 (176)
T cd01464 3 RLPIYLLLDTSGSMAGEPIEALNQGLQMLQSELRQDPYALESVEISVITFDSAARVIVPLTP-LE--S-----FQPPRLT 74 (176)
T ss_pred CCCEEEEEECCCCCCChHHHHHHHHHHHHHHHHhcChhhccccEEEEEEecCCceEecCCcc-HH--h-----cCCCccc
Confidence 46799999999999999999999999999998864 568999999999887654321 11 1 1244678
Q ss_pred CCCCCchHHHHHHHHHHhhcC---------CCCccEEEEEecCCCCChhhHH-HHHHHHhhccCCCCCeEEEEEecCCCC
Q 004469 399 AGGGTNILLPLKQAIKLLSDT---------SESIPLIFLITDGTVGDERGIC-NEIKSYLTNTRSISPRICTFGVGLYCN 468 (751)
Q Consensus 399 a~GgT~l~~aL~~A~~~l~~~---------~~~~~~IiLlTDG~~~~~~~i~-~~v~~~~~~~~~~~~rIft~GiG~~~n 468 (751)
++|||++..||+.|++.+... ....+.|||+|||.+++..... +.+++. ...+++|++||+|.++|
T Consensus 75 ~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~----~~~~~~i~~igiG~~~~ 150 (176)
T cd01464 75 ASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTDDLTAAIERIKEA----RDSKGRIVACAVGPKAD 150 (176)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCchHHHHHHHHHhh----cccCCcEEEEEeccccC
Confidence 889999999999999988542 1224589999999987653322 333332 22358999999999999
Q ss_pred HHHHHHHHH
Q 004469 469 HYFLQILAQ 477 (751)
Q Consensus 469 ~~lL~~LA~ 477 (751)
..+|+.||.
T Consensus 151 ~~~L~~ia~ 159 (176)
T cd01464 151 LDTLKQITE 159 (176)
T ss_pred HHHHHHHHC
Confidence 999999985
No 17
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.73 E-value=4.6e-17 Score=162.89 Aligned_cols=153 Identities=20% Similarity=0.226 Sum_probs=117.4
Q ss_pred CceEEEEEcCCCCCCCChHHHHHHHHHHHHHhc---------CCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHh
Q 004469 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---------NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS 395 (751)
Q Consensus 325 ~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L---------~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~ 395 (751)
|.+++||+|.|+||.+.+++.+|+++..+++.| +.+++++|+.|+++.....+.... ..+...+.+.|+
T Consensus 2 ~~dvv~vlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~~~~~l~~~--~~~~~~l~~~i~ 79 (186)
T cd01480 2 PVDITFVLDSSESVGLQNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEVEAGFLRD--IRNYTSLKEAVD 79 (186)
T ss_pred CeeEEEEEeCCCccchhhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCceeeEecccc--cCCHHHHHHHHH
Confidence 679999999999999999999999999999888 346899999999998765443211 234555666677
Q ss_pred cCCC-CCCCchHHHHHHHHHHhhc--CCCCccEEEEEecCCCCCh--hhHHHHHHHHhhccCCCCCeEEEEEecCCCCHH
Q 004469 396 SLVA-GGGTNILLPLKQAIKLLSD--TSESIPLIFLITDGTVGDE--RGICNEIKSYLTNTRSISPRICTFGVGLYCNHY 470 (751)
Q Consensus 396 ~l~a-~GgT~l~~aL~~A~~~l~~--~~~~~~~IiLlTDG~~~~~--~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~ 470 (751)
++.. +|+|++..||+.|.+.+.. .++..+.|||+|||..+.. ..+.+.++.. . ..+++||++|+|+ .|..
T Consensus 80 ~l~~~gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~-~---~~gi~i~~vgig~-~~~~ 154 (186)
T cd01480 80 NLEYIGGGTFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSPDGGIEKAVNEA-D---HLGIKIFFVAVGS-QNEE 154 (186)
T ss_pred hCccCCCCccHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCcchhHHHHHHHH-H---HCCCEEEEEecCc-cchH
Confidence 7664 7999999999999998864 2456689999999987432 2222223222 2 3468999999999 7888
Q ss_pred HHHHHHHhCCCEEE
Q 004469 471 FLQILAQIGRGYYD 484 (751)
Q Consensus 471 lL~~LA~~ggG~~~ 484 (751)
.|+.||..+++.|+
T Consensus 155 ~L~~IA~~~~~~~~ 168 (186)
T cd01480 155 PLSRIACDGKSALY 168 (186)
T ss_pred HHHHHHcCCcchhh
Confidence 99999999988743
No 18
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=99.72 E-value=2.4e-16 Score=154.25 Aligned_cols=152 Identities=20% Similarity=0.180 Sum_probs=118.1
Q ss_pred ceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcC---CCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCC-CC
Q 004469 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA-GG 401 (751)
Q Consensus 326 ~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a-~G 401 (751)
.|++||+|.||||.+.+++.+|+++..++..|. .+++++|+.|+++.....+... ..+.+.+.+.++++.+ +|
T Consensus 1 ~Dvv~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~~~~~~~~~~---~~~~~~~~~~l~~l~~~~g 77 (164)
T cd01472 1 ADIVFLVDGSESIGLSNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPRTEFYLNT---YRSKDDVLEAVKNLRYIGG 77 (164)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCceeEEEecCC---CCCHHHHHHHHHhCcCCCC
Confidence 379999999999999999999999999999886 4679999999999887654322 2334555555667776 58
Q ss_pred CCchHHHHHHHHHHhhc-----CCCCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHH
Q 004469 402 GTNILLPLKQAIKLLSD-----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILA 476 (751)
Q Consensus 402 gT~l~~aL~~A~~~l~~-----~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA 476 (751)
+|++..||..|.+.+.. .++..+.|||+|||..++.. ...... +. ..++++|+||+|.. |...|+.||
T Consensus 78 ~T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~~~~--~~~~~~-l~---~~gv~i~~ig~g~~-~~~~L~~ia 150 (164)
T cd01472 78 GTNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQDDV--EEPAVE-LK---QAGIEVFAVGVKNA-DEEELKQIA 150 (164)
T ss_pred CchHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCCchH--HHHHHH-HH---HCCCEEEEEECCcC-CHHHHHHHH
Confidence 89999999999998864 23456789999999876442 222222 22 23589999999987 999999999
Q ss_pred HhCCCEEEEeC
Q 004469 477 QIGRGYYDSAY 487 (751)
Q Consensus 477 ~~ggG~~~~i~ 487 (751)
..++|.|.+..
T Consensus 151 ~~~~~~~~~~~ 161 (164)
T cd01472 151 SDPKELYVFNV 161 (164)
T ss_pred CCCchheEEec
Confidence 99999777654
No 19
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=99.72 E-value=1.2e-16 Score=155.95 Aligned_cols=163 Identities=33% Similarity=0.474 Sum_probs=121.7
Q ss_pred eEEEEEcCCCCCCCC-----hHHHHHHHHHHHHHhcCCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHh-cCCCC
Q 004469 327 DVVFLVDVSGSMQGV-----LLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS-SLVAG 400 (751)
Q Consensus 327 ~vvfviD~SgSM~g~-----~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~-~l~a~ 400 (751)
|++||+|.||||.+. +++.+|+++..+++.++ +++|+|+.|++......+. ..+...+.++++.+. ....+
T Consensus 1 dvv~v~D~SgSM~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~l~~f~~~~~~~~~~--t~~~~~~~~~l~~~~~~~~~~ 77 (172)
T PF13519_consen 1 DVVFVLDNSGSMNGYDGNRTRIDQAKDALNELLANLP-GDRVGLVSFSDSSRTLSPL--TSDKDELKNALNKLSPQGMPG 77 (172)
T ss_dssp EEEEEEE-SGGGGTTTSSS-HHHHHHHHHHHHHHHHT-TSEEEEEEESTSCEEEEEE--ESSHHHHHHHHHTHHHHG--S
T ss_pred CEEEEEECCcccCCCCCCCcHHHHHHHHHHHHHHHCC-CCEEEEEEecccccccccc--cccHHHHHHHhhcccccccCc
Confidence 689999999999986 79999999999999986 7799999999987665542 246677777766666 45567
Q ss_pred CCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCC-HHHHHHHHHhC
Q 004469 401 GGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCN-HYFLQILAQIG 479 (751)
Q Consensus 401 GgT~l~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n-~~lL~~LA~~g 479 (751)
|+|++..||..|.+.+...+...+.|||+|||..+.. ..+.++. +. ..++++|+|++|...+ ...|+.||+.+
T Consensus 78 ~~t~~~~al~~a~~~~~~~~~~~~~iv~iTDG~~~~~--~~~~~~~-~~---~~~i~i~~v~~~~~~~~~~~l~~la~~t 151 (172)
T PF13519_consen 78 GGTNLYDALQEAAKMLASSDNRRRAIVLITDGEDNSS--DIEAAKA-LK---QQGITIYTVGIGSDSDANEFLQRLAEAT 151 (172)
T ss_dssp SS--HHHHHHHHHHHHHC-SSEEEEEEEEES-TTHCH--HHHHHHH-HH---CTTEEEEEEEES-TT-EHHHHHHHHHHT
T ss_pred cCCcHHHHHHHHHHHHHhCCCCceEEEEecCCCCCcc--hhHHHHH-HH---HcCCeEEEEEECCCccHHHHHHHHHHhc
Confidence 9999999999999999875546789999999987632 2233333 22 3458999999998766 48999999999
Q ss_pred CCEEEEe-CCCccHHHHHHH
Q 004469 480 RGYYDSA-YDPGSVDYRIRR 498 (751)
Q Consensus 480 gG~~~~i-~~~~~l~~~l~~ 498 (751)
||.|+.+ .+.+++.+.+++
T Consensus 152 gG~~~~~~~~~~~l~~~~~~ 171 (172)
T PF13519_consen 152 GGRYFHVDNDPEDLDDAFQQ 171 (172)
T ss_dssp EEEEEEE-SSSHHHHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHhc
Confidence 9999999 577777665543
No 20
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=99.70 E-value=5.2e-16 Score=154.72 Aligned_cols=166 Identities=16% Similarity=0.232 Sum_probs=122.1
Q ss_pred ceEEEEEcCCCCCCC-----ChHHHHHHHHHHHHHhc---CCCCcEEEEEe-CCceEEeeccccccCHhHHHHHHHHHhc
Q 004469 326 KDVVFLVDVSGSMQG-----VLLEQTKNALSASLSKL---NPQDSFNIIAF-NGETHLFSSSMKLASQGTIINATQWLSS 396 (751)
Q Consensus 326 ~~vvfviD~SgSM~g-----~~i~~aK~al~~~L~~L---~~~d~f~Ii~F-~~~~~~~~~~~~~~t~~~i~~a~~~I~~ 396 (751)
++++|++|.|+||.. .+++.+|+++..+++.+ .++++++++.| ++......|... +.+.+ ...++.
T Consensus 4 r~ivi~lD~S~SM~a~D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~~~PlT~--D~~~~---~~~L~~ 78 (183)
T cd01453 4 RHLIIVIDCSRSMEEQDLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEKLTDLTG--NPRKH---IQALKT 78 (183)
T ss_pred eEEEEEEECcHHHhcCCCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEEEECCCC--CHHHH---HHHhhc
Confidence 689999999999985 59999999999999865 67899999999 677777665432 33333 333443
Q ss_pred -CCCCCCCchHHHHHHHHHHhhcCCC--CccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHH
Q 004469 397 -LVAGGGTNILLPLKQAIKLLSDTSE--SIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ 473 (751)
Q Consensus 397 -l~a~GgT~l~~aL~~A~~~l~~~~~--~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~ 473 (751)
+...|||++..||+.|++.+...+. ..+.|||+|||...+...+.+. .+.+.+ .+++|+++|+|.. ..+|+
T Consensus 79 ~~~~~G~t~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~~~~~~~~-~~~l~~---~~I~v~~IgiG~~--~~~L~ 152 (183)
T cd01453 79 ARECSGEPSLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCDPGNIYET-IDKLKK---ENIRVSVIGLSAE--MHICK 152 (183)
T ss_pred ccCCCCchhHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCChhhHHHH-HHHHHH---cCcEEEEEEechH--HHHHH
Confidence 3556889999999999999965322 2347888899876554433222 333322 3589999999964 57899
Q ss_pred HHHHhCCCEEEEeCCCccHHHHHHHHHHHhccc
Q 004469 474 ILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSV 506 (751)
Q Consensus 474 ~LA~~ggG~~~~i~~~~~l~~~l~~~l~~~~~p 506 (751)
.||+.+||.|+.+.+.+++.+ .+.+...|
T Consensus 153 ~ia~~tgG~~~~~~~~~~l~~----~~~~~~~p 181 (183)
T cd01453 153 EICKATNGTYKVILDETHLKE----LLLEHVTP 181 (183)
T ss_pred HHHHHhCCeeEeeCCHHHHHH----HHHhcCCC
Confidence 999999999999988776655 44444544
No 21
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=99.70 E-value=6.3e-16 Score=154.50 Aligned_cols=172 Identities=19% Similarity=0.182 Sum_probs=120.0
Q ss_pred CceEEEEEcCCCCCCCChHHHHHHHHHHHHHhc-CCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCCCCCC
Q 004469 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL-NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGT 403 (751)
Q Consensus 325 ~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L-~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a~GgT 403 (751)
+.|++||||.||||.+. +...++++..+++.+ .++++|+|+.|+++++...+.. ... ..+.++++.+..+.++|+|
T Consensus 4 ~~Dvv~llD~SgSm~~~-~~~~~~~~~~l~~~~~~~~~rvglv~Fs~~~~~~~~l~-~~~-~~~~~~l~~l~~~~~~g~T 80 (185)
T cd01474 4 HFDLYFVLDKSGSVAAN-WIEIYDFVEQLVDRFNSPGLRFSFITFSTRATKILPLT-DDS-SAIIKGLEVLKKVTPSGQT 80 (185)
T ss_pred ceeEEEEEeCcCchhhh-HHHHHHHHHHHHHHcCCCCcEEEEEEecCCceEEEecc-ccH-HHHHHHHHHHhccCCCCCC
Confidence 57999999999999874 344456666666554 4679999999999988766532 222 2456666667777788999
Q ss_pred chHHHHHHHHHHhhcC----CCCccEEEEEecCCCCC--hhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHH
Q 004469 404 NILLPLKQAIKLLSDT----SESIPLIFLITDGTVGD--ERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQ 477 (751)
Q Consensus 404 ~l~~aL~~A~~~l~~~----~~~~~~IiLlTDG~~~~--~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~ 477 (751)
++..||+.|.+.+... +...+.|||+|||..++ .......++. +. ..++.||+||+| +.|...|+.||.
T Consensus 81 ~~~~aL~~a~~~l~~~~~~~r~~~~~villTDG~~~~~~~~~~~~~a~~-l~---~~gv~i~~vgv~-~~~~~~L~~iA~ 155 (185)
T cd01474 81 YIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLNGHKYPEHEAKL-SR---KLGAIVYCVGVT-DFLKSQLINIAD 155 (185)
T ss_pred cHHHHHHHHHHHHHhhccCCCCCCeEEEEEcCCCcCCCCCcchHHHHHH-HH---HcCCEEEEEeec-hhhHHHHHHHhC
Confidence 9999999999877421 11236899999999842 2222222222 22 235899999994 468899999998
Q ss_pred hCCCEEEEeCCCccHHHHHHHHHHHhc
Q 004469 478 IGRGYYDSAYDPGSVDYRIRRFFTAAS 504 (751)
Q Consensus 478 ~ggG~~~~i~~~~~l~~~l~~~l~~~~ 504 (751)
..++.|....+.+.+...+..+.+++.
T Consensus 156 ~~~~~f~~~~~~~~l~~~~~~~~~~~C 182 (185)
T cd01474 156 SKEYVFPVTSGFQALSGIIESVVKKAC 182 (185)
T ss_pred CCCeeEecCccHHHHHHHHHHHHHhhc
Confidence 775444345566777776666666554
No 22
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=99.68 E-value=5.1e-16 Score=155.17 Aligned_cols=149 Identities=23% Similarity=0.234 Sum_probs=112.7
Q ss_pred eEEEEEcCCCCCCCCh-HHHHHHHHHHHHHhcC---CCCcEEEEEeCCceEEeeccccc--cCHhHHHHHHHHHhc-CCC
Q 004469 327 DVVFLVDVSGSMQGVL-LEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKL--ASQGTIINATQWLSS-LVA 399 (751)
Q Consensus 327 ~vvfviD~SgSM~g~~-i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~~--~t~~~i~~a~~~I~~-l~a 399 (751)
||+||+|.||||.+.. ++.+|+++..+++.+. ++.+++|+.|++......+.... .+.+.+..+++.+.. ..+
T Consensus 2 Dv~~vlD~SgSm~~~~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~~~ 81 (186)
T cd01471 2 DLYLLVDGSGSIGYSNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAKELIRLSSPNSTNKDLALNAIRALLSLYYP 81 (186)
T ss_pred cEEEEEeCCCCccchhhHHHHHHHHHHHHHhcccCCCceEEEEEEecCCceEEEECCCccccchHHHHHHHHHHHhCcCC
Confidence 7999999999999887 9999999999999885 46799999999998765442221 122333334444443 356
Q ss_pred CCCCchHHHHHHHHHHhhcC----CCCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHH
Q 004469 400 GGGTNILLPLKQAIKLLSDT----SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQIL 475 (751)
Q Consensus 400 ~GgT~l~~aL~~A~~~l~~~----~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~L 475 (751)
+|+|++..||+.|.+.+... ++..+.|||+|||.+++........+.. . ..++.+++||+|.+.|..+|+.|
T Consensus 82 ~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~~~~~~a~~l-~---~~gv~v~~igiG~~~d~~~l~~i 157 (186)
T cd01471 82 NGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDSKFRTLKEARKL-R---ERGVIIAVLGVGQGVNHEENRSL 157 (186)
T ss_pred CCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCCCcchhHHHHHH-H---HCCCEEEEEEeehhhCHHHHHHh
Confidence 79999999999999988652 2345689999999987655544444433 2 23588999999999999999999
Q ss_pred HHhC
Q 004469 476 AQIG 479 (751)
Q Consensus 476 A~~g 479 (751)
|...
T Consensus 158 a~~~ 161 (186)
T cd01471 158 VGCD 161 (186)
T ss_pred cCCC
Confidence 9875
No 23
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=99.68 E-value=2.2e-15 Score=161.82 Aligned_cols=172 Identities=20% Similarity=0.227 Sum_probs=128.3
Q ss_pred CCceEEEEEcCCCCCCCChHHHHHHHHHHHHHh-cCCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCC---
Q 004469 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSK-LNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA--- 399 (751)
Q Consensus 324 ~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~-L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a--- 399 (751)
.|.+++||+|.||||.+ ++..+++++..+++. ++++|+++|+.|+++.....+.. .+.+.+ .+.|+.+.+
T Consensus 52 ~p~~vvlvlD~SgSM~~-~~~~a~~a~~~~l~~~l~~~d~v~lv~f~~~~~~~~~~t--~~~~~l---~~~l~~l~~~~~ 125 (296)
T TIGR03436 52 LPLTVGLVIDTSGSMRN-DLDRARAAAIRFLKTVLRPNDRVFVVTFNTRLRLLQDFT--SDPRLL---EAALNRLKPPLR 125 (296)
T ss_pred CCceEEEEEECCCCchH-HHHHHHHHHHHHHHhhCCCCCEEEEEEeCCceeEeecCC--CCHHHH---HHHHHhccCCCc
Confidence 47899999999999986 689999999999987 78999999999999987765421 234444 444555554
Q ss_pred ------------CCCCchHHHHHHHH-HHhhcCC---CCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEe
Q 004469 400 ------------GGGTNILLPLKQAI-KLLSDTS---ESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGV 463 (751)
Q Consensus 400 ------------~GgT~l~~aL~~A~-~~l~~~~---~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~Gi 463 (751)
+|+|+|..||..+. +++.... ...+.||++|||..+........+.+.+. ..++.||+||+
T Consensus 126 ~~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~p~rk~iIllTDG~~~~~~~~~~~~~~~~~---~~~v~vy~I~~ 202 (296)
T TIGR03436 126 TDYNSSGAFVRDGGGTALYDAITLAALEQLANALAGIPGRKALIVISDGGDNRSRDTLERAIDAAQ---RADVAIYSIDA 202 (296)
T ss_pred cccccccccccCCCcchhHHHHHHHHHHHHHHhhcCCCCCeEEEEEecCCCcchHHHHHHHHHHHH---HcCCEEEEecc
Confidence 79999999986654 4443321 13578999999987654333333333332 23589999999
Q ss_pred cCC-------------CCHHHHHHHHHhCCCEEEEeCCCccHHHHHHHHHHHhcc
Q 004469 464 GLY-------------CNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASS 505 (751)
Q Consensus 464 G~~-------------~n~~lL~~LA~~ggG~~~~i~~~~~l~~~l~~~l~~~~~ 505 (751)
|.. .+...|+.||+.+||.++++ +.+++...+.++...+.+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~~~~~-~~~~l~~~f~~i~~~~~~ 256 (296)
T TIGR03436 203 RGLRAPDLGAGAKAGLGGPEALERLAEETGGRAFYV-NSNDLDGAFAQIAEELRS 256 (296)
T ss_pred CccccCCcccccccCCCcHHHHHHHHHHhCCeEecc-cCccHHHHHHHHHHHHhh
Confidence 842 35789999999999999888 888898888887776665
No 24
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=99.67 E-value=1.1e-15 Score=157.59 Aligned_cols=170 Identities=17% Similarity=0.186 Sum_probs=123.6
Q ss_pred CceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcC---CCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCC-C
Q 004469 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA-G 400 (751)
Q Consensus 325 ~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a-~ 400 (751)
|.|++||||.|+||.+.+++++|+++..+++.|. ..++|+|+.|+++++...+.....+.+.+.+++. .+.. +
T Consensus 2 ~~DlvfllD~S~Sm~~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~~~~~l~~~~~~~~l~~~i~---~i~~~~ 78 (224)
T cd01475 2 PTDLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEFPLGRFKSKADLKRAVR---RMEYLE 78 (224)
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCceeEEecccccCCHHHHHHHHH---hCcCCC
Confidence 5799999999999999999999999999999885 3679999999999887665433344555666654 4444 4
Q ss_pred CCCchHHHHHHHHHHhhc-----CCCC---ccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHH
Q 004469 401 GGTNILLPLKQAIKLLSD-----TSES---IPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFL 472 (751)
Q Consensus 401 GgT~l~~aL~~A~~~l~~-----~~~~---~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL 472 (751)
|+|++..||+.+++.+.. .++. .+.+||+|||..++. +...++ .+. ..+++||+||+|+ .|...|
T Consensus 79 ~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~~~--~~~~a~-~lk---~~gv~i~~VgvG~-~~~~~L 151 (224)
T cd01475 79 TGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQDD--VSEVAA-KAR---ALGIEMFAVGVGR-ADEEEL 151 (224)
T ss_pred CCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCccc--HHHHHH-HHH---HCCcEEEEEeCCc-CCHHHH
Confidence 889999999999876432 1122 568899999987653 222222 222 2358999999998 488899
Q ss_pred HHHHHhCC-CEEEEeCCCccHHHHHHHHHHHhc
Q 004469 473 QILAQIGR-GYYDSAYDPGSVDYRIRRFFTAAS 504 (751)
Q Consensus 473 ~~LA~~gg-G~~~~i~~~~~l~~~l~~~l~~~~ 504 (751)
+.||...+ ++++.+.+.++++....++...+.
T Consensus 152 ~~ias~~~~~~~f~~~~~~~l~~~~~~l~~~~C 184 (224)
T cd01475 152 REIASEPLADHVFYVEDFSTIEELTKKFQGKIC 184 (224)
T ss_pred HHHhCCCcHhcEEEeCCHHHHHHHhhhcccccC
Confidence 99998765 567777777766655555444443
No 25
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=99.66 E-value=2.7e-15 Score=150.55 Aligned_cols=158 Identities=16% Similarity=0.159 Sum_probs=116.5
Q ss_pred CCCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCC---------CCcEEEEEeCCceEEeeccccccCHhHHHHHHHH
Q 004469 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP---------QDSFNIIAFNGETHLFSSSMKLASQGTIINATQW 393 (751)
Q Consensus 323 ~~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~---------~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~ 393 (751)
..+.|++||||.|+||...+++.+|+.+..++..+.. ++|++||.|+++++...+.....+.+.+..+++.
T Consensus 17 ~~~~DivfvlD~S~Sm~~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~~~~~L~d~~~~~~~~~ai~~ 96 (193)
T cd01477 17 NLWLDIVFVVDNSKGMTQGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNATVVADLNDLQSFDDLYSQIQG 96 (193)
T ss_pred cceeeEEEEEeCCCCcchhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceEEEEecccccCHHHHHHHHHH
Confidence 4578999999999999988999999999888776543 4799999999999876664333345555555443
Q ss_pred -HhcCCCCCCCchHHHHHHHHHHhhcC-----CCCccEEEEEecCCCCCh-hhHHHHHHHHhhccCCCCCeEEEEEecCC
Q 004469 394 -LSSLVAGGGTNILLPLKQAIKLLSDT-----SESIPLIFLITDGTVGDE-RGICNEIKSYLTNTRSISPRICTFGVGLY 466 (751)
Q Consensus 394 -I~~l~a~GgT~l~~aL~~A~~~l~~~-----~~~~~~IiLlTDG~~~~~-~~i~~~v~~~~~~~~~~~~rIft~GiG~~ 466 (751)
+..+..+|||++..||+.|.+.+... ++..+.+||||||..+.. ...... .+.+. ..++.||+||||.+
T Consensus 97 ~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~~~~~~~~-a~~l~---~~GI~i~tVGiG~~ 172 (193)
T cd01477 97 SLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEGSNDPRPI-AARLK---STGIAIITVAFTQD 172 (193)
T ss_pred HhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCCCCCHHHH-HHHHH---HCCCEEEEEEeCCC
Confidence 22455668999999999999998642 234578999999865422 222222 22232 24689999999999
Q ss_pred CCHHHHHHHHHhCCCEEE
Q 004469 467 CNHYFLQILAQIGRGYYD 484 (751)
Q Consensus 467 ~n~~lL~~LA~~ggG~~~ 484 (751)
.|..+++.|++...+.|.
T Consensus 173 ~d~~~~~~L~~ias~~~~ 190 (193)
T cd01477 173 ESSNLLDKLGKIASPGMN 190 (193)
T ss_pred CCHHHHHHHHHhcCCCCC
Confidence 998889999988765544
No 26
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.65 E-value=3.9e-15 Score=143.75 Aligned_cols=145 Identities=27% Similarity=0.279 Sum_probs=109.9
Q ss_pred ceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcC-CCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCCCCCCc
Q 004469 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN-PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTN 404 (751)
Q Consensus 326 ~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~-~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a~GgT~ 404 (751)
++++|++|+||||.+.+++.++.++..++..+. .+++++|+.|+++...+. .....+..++.+++..+.++|||+
T Consensus 1 ~~v~illD~SgSM~~~k~~~a~~~~~~l~~~~~~~~~~v~li~F~~~~~~~~----~~~~~~~~~~~~~l~~~~~~ggT~ 76 (152)
T cd01462 1 GPVILLVDQSGSMYGAPEEVAKAVALALLRIALAENRDTYLILFDSEFQTKI----VDKTDDLEEPVEFLSGVQLGGGTD 76 (152)
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCCceEEe----cCCcccHHHHHHHHhcCCCCCCcC
Confidence 479999999999999999999999988887776 489999999999843321 124556777888888888899999
Q ss_pred hHHHHHHHHHHhhcCCCCccEEEEEecCC-CCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHHh
Q 004469 405 ILLPLKQAIKLLSDTSESIPLIFLITDGT-VGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQI 478 (751)
Q Consensus 405 l~~aL~~A~~~l~~~~~~~~~IiLlTDG~-~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~~ 478 (751)
+..+|..+++.+.........||++|||. ........ ....... ..+++||+||+|+..|..+.+..|+.
T Consensus 77 l~~al~~a~~~l~~~~~~~~~ivliTDG~~~~~~~~~~-~~~~~~~---~~~~~v~~~~~g~~~~~~~~~~~~~~ 147 (152)
T cd01462 77 INKALRYALELIERRDPRKADIVLITDGYEGGVSDELL-REVELKR---SRVARFVALALGDHGNPGYDRISAED 147 (152)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCHHHH-HHHHHHH---hcCcEEEEEEecCCCCchHHHHhhhh
Confidence 99999999999875434457899999996 33333332 1122221 23589999999999888877666654
No 27
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=99.64 E-value=6.3e-15 Score=146.29 Aligned_cols=159 Identities=18% Similarity=0.201 Sum_probs=117.2
Q ss_pred eEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCC---CCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCC-CCCC
Q 004469 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP---QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV-AGGG 402 (751)
Q Consensus 327 ~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~---~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~-a~Gg 402 (751)
|++||+|.|+||....++.+|+.+..+++.|.. +.||+|+.|+++.+...+.....+...+ .+.++.+. .+|+
T Consensus 2 Di~fvlD~S~S~~~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~~~~~l~~~~~~~~~---~~~i~~~~~~~g~ 78 (177)
T cd01469 2 DIVFVLDGSGSIYPDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFRTEFTLNEYRTKEEP---LSLVKHISQLLGL 78 (177)
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCceeEEEecCccCCHHHH---HHHHHhCccCCCC
Confidence 799999999999988999999999999998874 6899999999998765543322334444 44455544 4588
Q ss_pred CchHHHHHHHHHHhhc-----CCCCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCC----HHHHH
Q 004469 403 TNILLPLKQAIKLLSD-----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCN----HYFLQ 473 (751)
Q Consensus 403 T~l~~aL~~A~~~l~~-----~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n----~~lL~ 473 (751)
|++..||+.|.+.+.. .++..+.+||+|||..++.....+ +.+.++ ..++.||+||+|+..+ ...|+
T Consensus 79 T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~~~~~~-~~~~~k---~~gv~v~~Vgvg~~~~~~~~~~~L~ 154 (177)
T cd01469 79 TNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDPLLKD-VIPQAE---REGIIRYAIGVGGHFQRENSREELK 154 (177)
T ss_pred ccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCccccHH-HHHHHH---HCCcEEEEEEecccccccccHHHHH
Confidence 9999999999987632 134567899999999876543322 222232 2358999999998765 68899
Q ss_pred HHHHhCCC-EEEEeCCCccH
Q 004469 474 ILAQIGRG-YYDSAYDPGSV 492 (751)
Q Consensus 474 ~LA~~ggG-~~~~i~~~~~l 492 (751)
.||...++ +++.+.+.++|
T Consensus 155 ~ias~p~~~h~f~~~~~~~l 174 (177)
T cd01469 155 TIASKPPEEHFFNVTDFAAL 174 (177)
T ss_pred HHhcCCcHHhEEEecCHHHh
Confidence 99998775 55556665544
No 28
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=99.62 E-value=8.4e-15 Score=144.84 Aligned_cols=142 Identities=19% Similarity=0.260 Sum_probs=103.2
Q ss_pred eEEEEEcCCCCCCC-ChHHHHHHHHHHHHHhcCC-CCcEEEEEeCCce--E---EeeccccccCHhHHHHHHHHHhcCCC
Q 004469 327 DVVFLVDVSGSMQG-VLLEQTKNALSASLSKLNP-QDSFNIIAFNGET--H---LFSSSMKLASQGTIINATQWLSSLVA 399 (751)
Q Consensus 327 ~vvfviD~SgSM~g-~~i~~aK~al~~~L~~L~~-~d~f~Ii~F~~~~--~---~~~~~~~~~t~~~i~~a~~~I~~l~a 399 (751)
.++|++|+||||.+ .+++.+|+++..++..|.. +|+|+|+.|++.. . .+.. ....+.....++.+.+..+.+
T Consensus 2 ~v~~llD~SgSM~~~~kl~~ak~a~~~l~~~l~~~~d~~~l~~F~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~ 80 (174)
T cd01454 2 AVTLLLDLSGSMRSDRRIDVAKKAAVLLAEALEACGVPHAILGFTTDAGGRERVRWIK-IKDFDESLHERARKRLAALSP 80 (174)
T ss_pred EEEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCccceEEEE-ecCcccccchhHHHHHHccCC
Confidence 47899999999998 5999999999999988885 9999999999873 1 1211 112232222355667888888
Q ss_pred CCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCCChh----h--HHHHHHHHhhccCCCCCeEEEEEecCCCCH
Q 004469 400 GGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDER----G--ICNEIKSYLTNTRSISPRICTFGVGLYCNH 469 (751)
Q Consensus 400 ~GgT~l~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~~----~--i~~~v~~~~~~~~~~~~rIft~GiG~~~n~ 469 (751)
+|+|++..||..+.+.+...+...+.||++|||.+++.. . ..+...+........++++|++|+|++.+.
T Consensus 81 ~g~T~~~~al~~a~~~l~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~igig~~~~~ 156 (174)
T cd01454 81 GGNTRDGAAIRHAAERLLARPEKRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGIEVFGITIDRDATT 156 (174)
T ss_pred CCCCcHHHHHHHHHHHHhcCCCcCcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCcEEEEEEecCcccc
Confidence 899999999999999987665667899999999986432 1 111221112222234699999999998763
No 29
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=99.62 E-value=2e-14 Score=161.31 Aligned_cols=180 Identities=23% Similarity=0.269 Sum_probs=133.3
Q ss_pred CCceEEEEEcCCCCCCCCh-HHHHHHHHHHHHHhcCC-CC--cEEEEEeCCceEEeeccccc--cCHhHHHHHHHHHh-c
Q 004469 324 FRKDVVFLVDVSGSMQGVL-LEQTKNALSASLSKLNP-QD--SFNIIAFNGETHLFSSSMKL--ASQGTIINATQWLS-S 396 (751)
Q Consensus 324 ~~~~vvfviD~SgSM~g~~-i~~aK~al~~~L~~L~~-~d--~f~Ii~F~~~~~~~~~~~~~--~t~~~i~~a~~~I~-~ 396 (751)
...+++||||.|+||.-.. ++.+|.++..++..+.. .| ++.++.|++..+.+.+.... .+.+.+..++..+. .
T Consensus 41 ~~lDIvFLLD~SgSMg~~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~~r~vfpL~s~~s~Dk~~aL~~I~sL~~~ 120 (576)
T PTZ00441 41 EEVDLYLLVDGSGSIGYHNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTTELIRLGSGASKDKEQALIIVKSLRKT 120 (576)
T ss_pred CCceEEEEEeCCCccCCccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCceEEEecCCCccccHHHHHHHHHHHHhh
Confidence 4689999999999997444 48899999999998853 34 55569999998866543221 23334444444443 4
Q ss_pred CCCCCCCchHHHHHHHHHHhhcC---CCCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHH
Q 004469 397 LVAGGGTNILLPLKQAIKLLSDT---SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ 473 (751)
Q Consensus 397 l~a~GgT~l~~aL~~A~~~l~~~---~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~ 473 (751)
+.++|+|++..||..+.+.+... ....+.|||||||..++.....+.++. +. ..++.||+||||.+.+..+|+
T Consensus 121 ~~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns~~dvleaAq~-LR---~~GVeI~vIGVG~g~n~e~Lr 196 (576)
T PTZ00441 121 YLPYGKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNSKYRALEESRK-LK---DRNVKLAVIGIGQGINHQFNR 196 (576)
T ss_pred ccCCCCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCCCCcccHHHHHHH-HH---HCCCEEEEEEeCCCcCHHHHH
Confidence 56779999999999998887642 234579999999998654444444433 22 235899999999999999999
Q ss_pred HHH----HhCCCEEEEeCCCccHHHHHHHHHHHhccce
Q 004469 474 ILA----QIGRGYYDSAYDPGSVDYRIRRFFTAASSVF 507 (751)
Q Consensus 474 ~LA----~~ggG~~~~i~~~~~l~~~l~~~l~~~~~p~ 507 (751)
.|| ..++|.++...+.+++...+..+++++...+
T Consensus 197 lIAgC~p~~g~c~~Y~vadf~eL~~ivk~LikkVC~ev 234 (576)
T PTZ00441 197 LLAGCRPREGKCKFYSDADWEEAKNLIKPFIAKVCTEV 234 (576)
T ss_pred HHhccCCCCCCCceEEeCCHHHHHHHHHHHHHHhcccc
Confidence 999 4467788888888888888888888887655
No 30
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.62 E-value=1.2e-14 Score=140.53 Aligned_cols=148 Identities=21% Similarity=0.236 Sum_probs=114.8
Q ss_pred eEEEEEcCCCCCCCChHHHHHHHHHHHHHhcC---CCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCCC-C-
Q 004469 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG-G- 401 (751)
Q Consensus 327 ~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a~-G- 401 (751)
|++||+|+||||.+.+++.+++++..+++.+. ++++++|+.|+++.....+..... +..+..+.++.+... |
T Consensus 2 di~~llD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~ 78 (161)
T cd01450 2 DIVFLLDGSESVGPENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRVEFSLNDYK---SKDDLLKAVKNLKYLGGG 78 (161)
T ss_pred cEEEEEeCCCCcCHHHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCceEEEECCCCC---CHHHHHHHHHhcccCCCC
Confidence 79999999999998899999999999998886 489999999999877654432211 455666667766544 3
Q ss_pred CCchHHHHHHHHHHhhcCC----CCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHH
Q 004469 402 GTNILLPLKQAIKLLSDTS----ESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQ 477 (751)
Q Consensus 402 gT~l~~aL~~A~~~l~~~~----~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~ 477 (751)
+|++..||..+.+.+.... ...+.|||+|||..++.....+.++.. . ..++++++||+|+ .+...|+.||.
T Consensus 79 ~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~-~---~~~v~v~~i~~g~-~~~~~l~~la~ 153 (161)
T cd01450 79 GTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDGGDPKEAAAKL-K---DEGIKVFVVGVGP-ADEEELREIAS 153 (161)
T ss_pred CccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCCcchHHHHHHH-H---HCCCEEEEEeccc-cCHHHHHHHhC
Confidence 8999999999999987653 556789999999987654344433333 2 2358999999999 78999999999
Q ss_pred hCCCE
Q 004469 478 IGRGY 482 (751)
Q Consensus 478 ~ggG~ 482 (751)
.+++.
T Consensus 154 ~~~~~ 158 (161)
T cd01450 154 CPSER 158 (161)
T ss_pred CCCCC
Confidence 88443
No 31
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.61 E-value=2e-14 Score=140.87 Aligned_cols=147 Identities=18% Similarity=0.183 Sum_probs=110.4
Q ss_pred eEEEEEcCCCCCCCChHHHHHHHHHHHHHhcC---CCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCC-CCCC
Q 004469 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV-AGGG 402 (751)
Q Consensus 327 ~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~-a~Gg 402 (751)
|++||+|.|+||.+..++.+|+++..+++.+. ++++++|+.|+++++...+.. +..+.+.+.+.+..+. .+|+
T Consensus 2 Dv~~vlD~S~Sm~~~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~~~~~~l~---~~~~~~~l~~~l~~~~~~~g~ 78 (164)
T cd01482 2 DIVFLVDGSWSIGRSNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPRTEFDLN---AYTSKEDVLAAIKNLPYKGGN 78 (164)
T ss_pred CEEEEEeCCCCcChhhHHHHHHHHHHHHhheeeCCCceEEEEEEECCCeeEEEecC---CCCCHHHHHHHHHhCcCCCCC
Confidence 79999999999998899999999999998874 578999999999987654422 2234556666677666 4689
Q ss_pred CchHHHHHHHHHHhhc-----CCCCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHH
Q 004469 403 TNILLPLKQAIKLLSD-----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQ 477 (751)
Q Consensus 403 T~l~~aL~~A~~~l~~-----~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~ 477 (751)
|++..||+.+.+.+.. .++..+.|||+|||..++. +.+. .+.+. ..++.||+||+|. .+...|+.||.
T Consensus 79 T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~~~--~~~~-a~~lk---~~gi~i~~ig~g~-~~~~~L~~ia~ 151 (164)
T cd01482 79 TRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQDD--VELP-ARVLR---NLGVNVFAVGVKD-ADESELKMIAS 151 (164)
T ss_pred ChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCCch--HHHH-HHHHH---HCCCEEEEEecCc-CCHHHHHHHhC
Confidence 9999999998876532 1234568999999998653 1121 22222 2458999999998 46889999999
Q ss_pred hCCCEE
Q 004469 478 IGRGYY 483 (751)
Q Consensus 478 ~ggG~~ 483 (751)
.....+
T Consensus 152 ~~~~~~ 157 (164)
T cd01482 152 KPSETH 157 (164)
T ss_pred CCchhe
Confidence 876543
No 32
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=99.58 E-value=2.2e-14 Score=141.23 Aligned_cols=166 Identities=29% Similarity=0.358 Sum_probs=120.0
Q ss_pred eEEEEEcCCCCCCCChHHHHHHHHHHHHHhc---CCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhc-CCCCCC
Q 004469 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSS-LVAGGG 402 (751)
Q Consensus 327 ~vvfviD~SgSM~g~~i~~aK~al~~~L~~L---~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~-l~a~Gg 402 (751)
||+||||.|+||.+..++.+|+++..+++.+ +.+.+|+|+.|++......+.....+.+.+..++ ... ...+|+
T Consensus 1 DivflvD~S~sm~~~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~g~ 78 (178)
T PF00092_consen 1 DIVFLVDTSGSMSGDNFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSARVLFSLTDYQSKNDLLNAI--NDSIPSSGGG 78 (178)
T ss_dssp EEEEEEE-STTSCHHHHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEEEEEETTSHSSHHHHHHHH--HTTGGCCBSS
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHHHhhhccccccccceeeeecccccccccccccccccccccc--cccccccchh
Confidence 6999999999999999999999999999966 4688999999999998665433323334444443 143 345599
Q ss_pred CchHHHHHHHHHHhhcC-----CCCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHH
Q 004469 403 TNILLPLKQAIKLLSDT-----SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQ 477 (751)
Q Consensus 403 T~l~~aL~~A~~~l~~~-----~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~ 477 (751)
|++..||+.|.+.+... +...+.+|++|||..++.............. .++.++++|+ ..++...|+.||.
T Consensus 79 t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~---~~i~~~~ig~-~~~~~~~l~~la~ 154 (178)
T PF00092_consen 79 TNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDSDSPSEEAANLKKS---NGIKVIAIGI-DNADNEELRELAS 154 (178)
T ss_dssp B-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSHSGHHHHHHHHHHH---CTEEEEEEEE-SCCHHHHHHHHSH
T ss_pred hhHHHHHhhhhhcccccccccccccccceEEEEeecccCCcchHHHHHHHHHh---cCcEEEEEec-CcCCHHHHHHHhC
Confidence 99999999999998653 4566789999999998765444333333222 2455666666 4678999999996
Q ss_pred hC--CCEEEEeCCCccHHHHHHH
Q 004469 478 IG--RGYYDSAYDPGSVDYRIRR 498 (751)
Q Consensus 478 ~g--gG~~~~i~~~~~l~~~l~~ 498 (751)
.+ .+++..+.+..++.+..++
T Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~ 177 (178)
T PF00092_consen 155 CPTSEGHVFYLADFSDLSQIIQQ 177 (178)
T ss_dssp SSTCHHHEEEESSHHHHHHHHHH
T ss_pred CCCCCCcEEEcCCHHHHHHHHhc
Confidence 64 4678888888777765543
No 33
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.58 E-value=3.7e-14 Score=163.55 Aligned_cols=159 Identities=22% Similarity=0.270 Sum_probs=124.0
Q ss_pred CCCCceEEEEEcCCCCCCCChHHHHHHHHHHHHHh-cCCCCcEEEEEeCCc-eEEeeccccccCHhHHHHHHHHHhcCCC
Q 004469 322 KVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSK-LNPQDSFNIIAFNGE-THLFSSSMKLASQGTIINATQWLSSLVA 399 (751)
Q Consensus 322 ~~~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~-L~~~d~f~Ii~F~~~-~~~~~~~~~~~t~~~i~~a~~~I~~l~a 399 (751)
...+..++||||+||||.+.+|..+|.++..+|.. +.+.|+++||.|+++ ..+..+. +. ++..+.++|+.+.+
T Consensus 398 ~~~~~~vvfvvD~SGSM~~~rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a~~~lpp----T~-~~~~~~~~L~~l~~ 472 (584)
T PRK13406 398 QRSETTTIFVVDASGSAALHRLAEAKGAVELLLAEAYVRRDQVALVAFRGRGAELLLPP----TR-SLVRAKRSLAGLPG 472 (584)
T ss_pred ccCCccEEEEEECCCCCcHhHHHHHHHHHHHHHHhhcCCCCEEEEEEECCCceeEEcCC----Cc-CHHHHHHHHhcCCC
Confidence 34578999999999999999999999999998865 688999999999765 6554332 22 67778899999999
Q ss_pred CCCCchHHHHHHHHHHhhcC--CCCccEEEEEecCCCCCh-----------hhHHHHHHHHhhccCCCCCeEEEEEecCC
Q 004469 400 GGGTNILLPLKQAIKLLSDT--SESIPLIFLITDGTVGDE-----------RGICNEIKSYLTNTRSISPRICTFGVGLY 466 (751)
Q Consensus 400 ~GgT~l~~aL~~A~~~l~~~--~~~~~~IiLlTDG~~~~~-----------~~i~~~v~~~~~~~~~~~~rIft~GiG~~ 466 (751)
+|||+|..+|..|++.+... ++..+.|||+|||..+.. ...... ...+ ...++++++|++|..
T Consensus 473 gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~~~-a~~~---~~~gi~~~vId~g~~ 548 (584)
T PRK13406 473 GGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGRAQAEEDALAA-ARAL---RAAGLPALVIDTSPR 548 (584)
T ss_pred CCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccccchhhHHHHH-HHHH---HhcCCeEEEEecCCC
Confidence 99999999999999987543 344689999999998632 111111 2222 234588999999976
Q ss_pred CCHHHHHHHHHhCCCEEEEeCCCc
Q 004469 467 CNHYFLQILAQIGRGYYDSAYDPG 490 (751)
Q Consensus 467 ~n~~lL~~LA~~ggG~~~~i~~~~ 490 (751)
. ..+++.||+.+||.|+.+.+.+
T Consensus 549 ~-~~~~~~LA~~~gg~y~~l~~~~ 571 (584)
T PRK13406 549 P-QPQARALAEAMGARYLPLPRAD 571 (584)
T ss_pred C-cHHHHHHHHhcCCeEEECCCCC
Confidence 4 4578999999999999987654
No 34
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=99.56 E-value=2.1e-13 Score=137.14 Aligned_cols=171 Identities=15% Similarity=0.151 Sum_probs=118.0
Q ss_pred eEEEEEcCCCCCCCChHH-HHHHHHHHHHHhcC---CCCcEEEEEeCCceEEeecccc--ccCHhHHHHHHHHHhc-CCC
Q 004469 327 DVVFLVDVSGSMQGVLLE-QTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMK--LASQGTIINATQWLSS-LVA 399 (751)
Q Consensus 327 ~vvfviD~SgSM~g~~i~-~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~--~~t~~~i~~a~~~I~~-l~a 399 (751)
|++|++|.|+||....++ ..|+.+..+++.|. .+.|++|+.|++..+...+... ..+.+.+.++++.+.. ...
T Consensus 2 Di~fllD~S~Si~~~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~ 81 (192)
T cd01473 2 DLTLILDESASIGYSNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEKNRDVVPFSDEERYDKNELLKKINDLKNSYRS 81 (192)
T ss_pred cEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCccCCCccEEEEEEecCCceeEEecCcccccCHHHHHHHHHHHHhccCC
Confidence 799999999999877777 48999999999886 4689999999999876544322 1334455555555542 334
Q ss_pred CCCCchHHHHHHHHHHhhcCCC----CccEEEEEecCCCCCh--hhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHH
Q 004469 400 GGGTNILLPLKQAIKLLSDTSE----SIPLIFLITDGTVGDE--RGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ 473 (751)
Q Consensus 400 ~GgT~l~~aL~~A~~~l~~~~~----~~~~IiLlTDG~~~~~--~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~ 473 (751)
+|||++..||+.|.+.+....+ ..+.+||||||..++. ..+.+..+ .++ ..++.+|++|||.. +...|+
T Consensus 82 ~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~~~~~~~~~a~-~lk---~~gV~i~~vGiG~~-~~~el~ 156 (192)
T cd01473 82 GGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSASKKELQDISL-LYK---EENVKLLVVGVGAA-SENKLK 156 (192)
T ss_pred CCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCcchhhHHHHHH-HHH---HCCCEEEEEEeccc-cHHHHH
Confidence 6999999999999988754322 3678999999998753 22333222 222 24699999999985 677899
Q ss_pred HHHHh--CCCE--EEEeCCCccHHHHHHHHHHH
Q 004469 474 ILAQI--GRGY--YDSAYDPGSVDYRIRRFFTA 502 (751)
Q Consensus 474 ~LA~~--ggG~--~~~i~~~~~l~~~l~~~l~~ 502 (751)
.||.. +.+. +++..+.+++......+..+
T Consensus 157 ~ia~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~ 189 (192)
T cd01473 157 LLAGCDINNDNCPNVIKTEWNNLNGISKFLTDK 189 (192)
T ss_pred HhcCCCCCCCCCCeEEecchhhHHHHHHHHHhh
Confidence 99875 2222 33333466666555554443
No 35
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=99.56 E-value=1.4e-13 Score=134.43 Aligned_cols=144 Identities=19% Similarity=0.227 Sum_probs=105.5
Q ss_pred eEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCC---CCcEEEEEeCC--ceEEeeccccccCHhHHHHHHHHHhcCCC-C
Q 004469 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP---QDSFNIIAFNG--ETHLFSSSMKLASQGTIINATQWLSSLVA-G 400 (751)
Q Consensus 327 ~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~---~d~f~Ii~F~~--~~~~~~~~~~~~t~~~i~~a~~~I~~l~a-~ 400 (751)
|++|++|.|+||.+ .++..|+++..++..|.. .++++|+.|++ ......+.... .+.+.+.+.|+.+.+ +
T Consensus 2 dv~~llD~S~Sm~~-~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~l~~~---~~~~~l~~~i~~l~~~g 77 (163)
T cd01476 2 DLLFVLDSSGSVRG-KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQRVRFNLPKH---NDGEELLEKVDNLRFIG 77 (163)
T ss_pred CEEEEEeCCcchhh-hHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceEEEecCCCC---CCHHHHHHHHHhCccCC
Confidence 79999999999986 678889999999988864 89999999999 44443332111 233455566777765 5
Q ss_pred CCCchHHHHHHHHHHhhc----CCCCccEEEEEecCCCCCh-hhHHHHHHHHhhccCCCCCeEEEEEecCC--CCHHHHH
Q 004469 401 GGTNILLPLKQAIKLLSD----TSESIPLIFLITDGTVGDE-RGICNEIKSYLTNTRSISPRICTFGVGLY--CNHYFLQ 473 (751)
Q Consensus 401 GgT~l~~aL~~A~~~l~~----~~~~~~~IiLlTDG~~~~~-~~i~~~v~~~~~~~~~~~~rIft~GiG~~--~n~~lL~ 473 (751)
|+|++..||+.+.+.+.. .++..+.+||+|||..++. ....+. +.. ..++.+|+||+|+. .|...|+
T Consensus 78 g~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~~~~~~~----l~~--~~~v~v~~vg~g~~~~~~~~~L~ 151 (163)
T cd01476 78 GTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHDDPEKQARI----LRA--VPNIETFAVGTGDPGTVDTEELH 151 (163)
T ss_pred CCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCCchHHHHHH----Hhh--cCCCEEEEEECCCccccCHHHHH
Confidence 889999999999999852 1233468999999988643 222222 222 24589999999998 8988888
Q ss_pred HHHHhCC
Q 004469 474 ILAQIGR 480 (751)
Q Consensus 474 ~LA~~gg 480 (751)
.||....
T Consensus 152 ~ia~~~~ 158 (163)
T cd01476 152 SITGNED 158 (163)
T ss_pred HHhCCCc
Confidence 8876554
No 36
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=99.55 E-value=1.8e-13 Score=134.14 Aligned_cols=154 Identities=27% Similarity=0.319 Sum_probs=122.4
Q ss_pred CceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCC---CCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCC--
Q 004469 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP---QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA-- 399 (751)
Q Consensus 325 ~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~---~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a-- 399 (751)
|.+++|++|.|+||.+.+++.+++++..++..+.. +++++|+.|++....+.+.. ...+.......++.+..
T Consensus 1 ~~~v~l~vD~S~SM~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~ 77 (177)
T smart00327 1 PLDVVFLLDGSGSMGPNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDATVLFPLN---DSRSKDALLEALASLSYKL 77 (177)
T ss_pred CccEEEEEeCCCccchHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCceEEEccc---ccCCHHHHHHHHHhcCCCC
Confidence 47899999999999999999999999999999986 89999999999877665432 23455566667777774
Q ss_pred CCCCchHHHHHHHHHHhhcC-----CCCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHH
Q 004469 400 GGGTNILLPLKQAIKLLSDT-----SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQI 474 (751)
Q Consensus 400 ~GgT~l~~aL~~A~~~l~~~-----~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~ 474 (751)
+|+|++..+|+.+++.+... .+..+.||++|||..++...+.+.++.... .++.++.||+|...+...|+.
T Consensus 78 ~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~~~~~~~~~~~~~~----~~i~i~~i~~~~~~~~~~l~~ 153 (177)
T smart00327 78 GGGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESNDGGDLLKAAKELKR----SGVKVFVVGVGNDVDEEELKK 153 (177)
T ss_pred CCCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCCCccHHHHHHHHHH----CCCEEEEEEccCccCHHHHHH
Confidence 79999999999999987421 112468999999998864344444444422 248999999998879999999
Q ss_pred HHHhCCCEEEE
Q 004469 475 LAQIGRGYYDS 485 (751)
Q Consensus 475 LA~~ggG~~~~ 485 (751)
|+..++|.|.+
T Consensus 154 ~~~~~~~~~~~ 164 (177)
T smart00327 154 LASAPGGVYVF 164 (177)
T ss_pred HhCCCcceEEe
Confidence 99999999876
No 37
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.53 E-value=4.5e-13 Score=132.11 Aligned_cols=170 Identities=15% Similarity=0.071 Sum_probs=115.6
Q ss_pred ceEEEEEcCCCCCC------C---ChHHHHHHHHHHHHH--hcCCCCcEEEEEeCCceE--E-eeccccccCHhHHHHHH
Q 004469 326 KDVVFLVDVSGSMQ------G---VLLEQTKNALSASLS--KLNPQDSFNIIAFNGETH--L-FSSSMKLASQGTIINAT 391 (751)
Q Consensus 326 ~~vvfviD~SgSM~------g---~~i~~aK~al~~~L~--~L~~~d~f~Ii~F~~~~~--~-~~~~~~~~t~~~i~~a~ 391 (751)
+.+++++|.||||. | .+++.+|..+..+.+ .=..+|+++. +++... . ........+.+.++...
T Consensus 1 ~~l~lavDlSgSM~~~~~~dg~~~~RL~a~k~v~~~f~~f~~~r~~DriG~--~g~~~~~~~lt~d~p~t~d~~~~~~l~ 78 (191)
T cd01455 1 KRLKLVVDVSGSMYRFNGYDGRLDRSLEAVVMVMEAFDGFEDKIQYDIIGH--SGDGPCVPFVKTNHPPKNNKERLETLK 78 (191)
T ss_pred CceEEEEECcHhHHHHhccCCccccHHHHHHHHHHHHHHHHHhCccceeee--cCcccccCccccccCcccchhHHHHHH
Confidence 57899999999992 2 467888888777763 2245788883 333321 1 11111122334344555
Q ss_pred HHHhcCCCC---CCCchHHHHHHHHHHhh-cCCCCccEEEEEecCCCCChh-hHHHHHHHHhhccCCCCCeEEEEEecCC
Q 004469 392 QWLSSLVAG---GGTNILLPLKQAIKLLS-DTSESIPLIFLITDGTVGDER-GICNEIKSYLTNTRSISPRICTFGVGLY 466 (751)
Q Consensus 392 ~~I~~l~a~---GgT~l~~aL~~A~~~l~-~~~~~~~~IiLlTDG~~~~~~-~i~~~v~~~~~~~~~~~~rIft~GiG~~ 466 (751)
+.+...+.+ .+|. .||..|++.+. ..+...+.|||||||..+... ...+....... ..+++|||||||+.
T Consensus 79 ~~l~~~q~g~ag~~Ta--dAi~~av~rl~~~~~a~~kvvILLTDG~n~~~~i~P~~aAa~lA~---~~gV~iytIgiG~~ 153 (191)
T cd01455 79 MMHAHSQFCWSGDHTV--EATEFAIKELAAKEDFDEAIVIVLSDANLERYGIQPKKLADALAR---EPNVNAFVIFIGSL 153 (191)
T ss_pred HHHHhcccCccCccHH--HHHHHHHHHHHhcCcCCCcEEEEEeCCCcCCCCCChHHHHHHHHH---hCCCEEEEEEecCC
Confidence 556655543 4555 99999999997 666677899999999975433 22221112111 24699999999985
Q ss_pred CCHHHHHHHHHhCCCEEEEeCCCccHHHHHHHHHHHh
Q 004469 467 CNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAA 503 (751)
Q Consensus 467 ~n~~lL~~LA~~ggG~~~~i~~~~~l~~~l~~~l~~~ 503 (751)
+...|+.+|+.+||.|+.+.+.+++++.++.+|...
T Consensus 154 -d~~~l~~iA~~tgG~~F~A~d~~~L~~iy~~I~~~~ 189 (191)
T cd01455 154 -SDEADQLQRELPAGKAFVCMDTSELPHIMQQIFTST 189 (191)
T ss_pred -CHHHHHHHHhCCCCcEEEeCCHHHHHHHHHHHHHHh
Confidence 778899999999999999999998988877776543
No 38
>PF13757 VIT_2: Vault protein inter-alpha-trypsin domain
Probab=99.52 E-value=1.1e-13 Score=115.85 Aligned_cols=70 Identities=20% Similarity=0.270 Sum_probs=65.5
Q ss_pred CccccceeeEEEEEEEEEeeeeEEEEEEEEEecccCCCceeEEEEEeecCCCceEEEEEEEECCEEEEEEEEeeh
Q 004469 79 PALIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLD 153 (751)
Q Consensus 79 ~~~vpL~~~~v~~~V~~~~~~A~vtv~q~f~N~~~~~~~~~E~~y~FPLp~~a~V~gf~~~i~gk~i~g~V~eke 153 (751)
...+||++.+|+..|.|+ .|.++++++|.| ++++++|+.|+|||+|+++|+||++.|+||++++++++|.
T Consensus 9 ~~~LpL~~~~v~a~v~G~--~~~~ta~lty~N---~~~~plEg~f~fPL~e~~~V~gfea~i~gr~v~~~v~~rt 78 (78)
T PF13757_consen 9 RNPLPLQSSRVTACVNGY--SAGTTASLTYEN---PEDRPLEGVFVFPLDEGATVVGFEADIGGRIVTVQVQDRT 78 (78)
T ss_pred CCcceEEEeEEEEEEEcc--cccEEEEEEEEC---CCCCcEEEEEEEecCCCcEEEEEEEEeCCcEEEEEeeecC
Confidence 446999999999999998 488999999999 5899999999999999999999999999999999999873
No 39
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=99.51 E-value=5.8e-13 Score=127.35 Aligned_cols=148 Identities=30% Similarity=0.441 Sum_probs=113.4
Q ss_pred eEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCC---CCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCCCCCC
Q 004469 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP---QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGT 403 (751)
Q Consensus 327 ~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~---~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a~GgT 403 (751)
+++|++|.|+||...+++.+++++..++..+.. .++++++.|++....+.+.....+.+.+.++++++.. ..+|+|
T Consensus 2 ~v~~viD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~t 80 (161)
T cd00198 2 DIVFLLDVSGSMGGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVLPLTTDTDKADLLEAIDALKK-GLGGGT 80 (161)
T ss_pred cEEEEEeCCCCcCcchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccceeecccccCCHHHHHHHHHhccc-CCCCCc
Confidence 689999999999778999999999999999986 8999999999887766543333344555555444332 256999
Q ss_pred chHHHHHHHHHHhhcC--CCCccEEEEEecCCCCChh-hHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHHhC
Q 004469 404 NILLPLKQAIKLLSDT--SESIPLIFLITDGTVGDER-GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIG 479 (751)
Q Consensus 404 ~l~~aL~~A~~~l~~~--~~~~~~IiLlTDG~~~~~~-~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~~g 479 (751)
++..++..+.+.+... ....+.+|++|||..++.. .....+... . ..+++++.||+|+..+...|+.|+..+
T Consensus 81 ~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~~~~~~~~~~~~-~---~~~v~v~~v~~g~~~~~~~l~~l~~~~ 155 (161)
T cd00198 81 NIGAALRLALELLKSAKRPNARRVIILLTDGEPNDGPELLAEAAREL-R---KLGITVYTIGIGDDANEDELKEIADKT 155 (161)
T ss_pred cHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCCcchhHHHHHHH-H---HcCCEEEEEEcCCCCCHHHHHHHhccc
Confidence 9999999999998653 4567799999999987553 232333222 2 235899999999977899999999887
No 40
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.51 E-value=3.1e-13 Score=157.35 Aligned_cols=162 Identities=24% Similarity=0.275 Sum_probs=120.9
Q ss_pred CCceEEEEEcCCCCCCCChHHHHHHHHHHHHHh-cCCCCcEEEEEeCCce-EEeeccccccCHhHHHHHHHHHhcCCCCC
Q 004469 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSK-LNPQDSFNIIAFNGET-HLFSSSMKLASQGTIINATQWLSSLVAGG 401 (751)
Q Consensus 324 ~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~-L~~~d~f~Ii~F~~~~-~~~~~~~~~~t~~~i~~a~~~I~~l~a~G 401 (751)
....++||||.||||.+.+|+.+|.++..++.. +.+.|+|+||+|++.. .++.+. + .++..+.+.|..+.++|
T Consensus 406 ~~~~v~fvvD~SGSM~~~rl~~aK~av~~Ll~~~~~~~D~v~Li~F~~~~a~~~lp~----t-~~~~~~~~~L~~l~~gG 480 (589)
T TIGR02031 406 SGRLLIFVVDASGSAAVARMSEAKGAVELLLGEAYVHRDQVSLIAFRGTAAEVLLPP----S-RSVEQAKRRLDVLPGGG 480 (589)
T ss_pred cCceEEEEEECCCCCChHHHHHHHHHHHHHHHhhccCCCEEEEEEECCCCceEECCC----C-CCHHHHHHHHhcCCCCC
Confidence 456799999999999999999999999998875 4578999999998764 443332 1 25566677899999999
Q ss_pred CCchHHHHHHHHHHhhcC--CCCccEEEEEecCCCCChh------------hHHHHHHHHhhccCCCCCeEEEEEecCC-
Q 004469 402 GTNILLPLKQAIKLLSDT--SESIPLIFLITDGTVGDER------------GICNEIKSYLTNTRSISPRICTFGVGLY- 466 (751)
Q Consensus 402 gT~l~~aL~~A~~~l~~~--~~~~~~IiLlTDG~~~~~~------------~i~~~v~~~~~~~~~~~~rIft~GiG~~- 466 (751)
+|++..+|..|++.+... ....+.|||+|||..+... ...+.+..........++.+++|++|..
T Consensus 481 gTpL~~gL~~A~~~~~~~~~~~~~~~ivllTDG~~nv~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vid~~~~~ 560 (589)
T TIGR02031 481 GTPLAAGLAAAFQTALQARSSGGTPTIVLITDGRGNIPLDGDPESIKADREQAAEEALALARKIREAGMPALVIDTAMRF 560 (589)
T ss_pred CCcHHHHHHHHHHHHHHhcccCCceEEEEECCCCCCCCCCcccccccccchhHHHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 999999999999988643 2344689999999975210 1111211111111234578999999976
Q ss_pred CCHHHHHHHHHhCCCEEEEeCCCc
Q 004469 467 CNHYFLQILAQIGRGYYDSAYDPG 490 (751)
Q Consensus 467 ~n~~lL~~LA~~ggG~~~~i~~~~ 490 (751)
.+..+++.||+.++|.|+++.+.+
T Consensus 561 ~~~~~~~~lA~~~~g~y~~l~~~~ 584 (589)
T TIGR02031 561 VSTGFAQKLARKMGAHYIYLPNAT 584 (589)
T ss_pred ccchHHHHHHHhcCCcEEeCCCCC
Confidence 346789999999999999988754
No 41
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=99.50 E-value=5.5e-13 Score=135.00 Aligned_cols=165 Identities=23% Similarity=0.254 Sum_probs=123.2
Q ss_pred CCCceEEEEEcCCCCCCCC-hHHHHHHHHHHHHH-hcCCCCcEEEEEeC-CceEEeeccccccCHhHHHHHHHHHhcCCC
Q 004469 323 VFRKDVVFLVDVSGSMQGV-LLEQTKNALSASLS-KLNPQDSFNIIAFN-GETHLFSSSMKLASQGTIINATQWLSSLVA 399 (751)
Q Consensus 323 ~~~~~vvfviD~SgSM~g~-~i~~aK~al~~~L~-~L~~~d~f~Ii~F~-~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a 399 (751)
....-||||+|.||||.+. +|+.+|-++..+|. .-...|++++|+|. ++.+++.+. ..+++.+.++|+.+..
T Consensus 76 r~g~lvvfvVDASgSM~~~~Rm~aaKG~~~~lL~dAYq~RdkvavI~F~G~~A~lll~p-----T~sv~~~~~~L~~l~~ 150 (261)
T COG1240 76 RAGNLIVFVVDASGSMAARRRMAAAKGAALSLLRDAYQRRDKVAVIAFRGEKAELLLPP-----TSSVELAERALERLPT 150 (261)
T ss_pred CcCCcEEEEEeCcccchhHHHHHHHHHHHHHHHHHHHHccceEEEEEecCCcceEEeCC-----cccHHHHHHHHHhCCC
Confidence 4567899999999999987 89999999887774 55678999999998 456665442 2467889999999999
Q ss_pred CCCCchHHHHHHHHHHhhcCC----CCccEEEEEecCCCCCh--hhHHHHHHHHhhccCCCCCeEEEEEecC-CCCHHHH
Q 004469 400 GGGTNILLPLKQAIKLLSDTS----ESIPLIFLITDGTVGDE--RGICNEIKSYLTNTRSISPRICTFGVGL-YCNHYFL 472 (751)
Q Consensus 400 ~GgT~l~~aL~~A~~~l~~~~----~~~~~IiLlTDG~~~~~--~~i~~~v~~~~~~~~~~~~rIft~GiG~-~~n~~lL 472 (751)
+|+|.|.+||..|++.+.... .....+|++|||..+.. ..+..............+..+..+.+.. .....+.
T Consensus 151 GG~TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~e~~~~~~g~~ 230 (261)
T COG1240 151 GGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDTEGSEVRLGLA 230 (261)
T ss_pred CCCCchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEecCCccccccHH
Confidence 999999999999999987542 45678999999997632 1222222222222223345566666643 3566789
Q ss_pred HHHHHhCCCEEEEeCCCccH
Q 004469 473 QILAQIGRGYYDSAYDPGSV 492 (751)
Q Consensus 473 ~~LA~~ggG~~~~i~~~~~l 492 (751)
+.||+..||.|+.+.+..+.
T Consensus 231 ~~iA~~~Gg~~~~L~~l~~~ 250 (261)
T COG1240 231 EEIARASGGEYYHLDDLSDD 250 (261)
T ss_pred HHHHHHhCCeEEecccccch
Confidence 99999999999999887654
No 42
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.48 E-value=2.6e-13 Score=163.05 Aligned_cols=185 Identities=27% Similarity=0.350 Sum_probs=158.6
Q ss_pred CCCCCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCceEE----eeccccccCHhHHHHHHHHHhc
Q 004469 321 RKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHL----FSSSMKLASQGTIINATQWLSS 396 (751)
Q Consensus 321 ~~~~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~----~~~~~~~~t~~~i~~a~~~I~~ 396 (751)
....|++++|++|.||||.|.+++.+|..+..+|+.|.++|.|+|++|++++.. +...+.++|..|++..++.|+.
T Consensus 221 aAt~pKdiviLlD~SgSm~g~~~~lak~tv~~iLdtLs~~Dfvni~tf~~~~~~v~pc~~~~lvqAt~~nk~~~~~~i~~ 300 (1104)
T KOG2353|consen 221 AATSPKDIVILLDVSGSMSGLRLDLAKQTVNEILDTLSDNDFVNILTFNSEVNPVSPCFNGTLVQATMRNKKVFKEAIET 300 (1104)
T ss_pred ccCCccceEEEEeccccccchhhHHHHHHHHHHHHhcccCCeEEEEeeccccCcccccccCceeecchHHHHHHHHHHhh
Confidence 446799999999999999999999999999999999999999999999999764 3455788999999999999999
Q ss_pred CCCCCCCchHHHHHHHHHHhhcCCC---------CccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCC
Q 004469 397 LVAGGGTNILLPLKQAIKLLSDTSE---------SIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYC 467 (751)
Q Consensus 397 l~a~GgT~l~~aL~~A~~~l~~~~~---------~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~ 467 (751)
+.+.|-+++..|++.|+++|..... -...|+++|||.+++..++++.... +...+|+|||-||..+
T Consensus 301 l~~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~C~~~iml~tdG~~~~~~~If~~yn~-----~~~~Vrvftflig~~~ 375 (1104)
T KOG2353|consen 301 LDAKGIANYTAALEYAFSLLRDYNDSRANTQRSPCNQAIMLITDGVDENAKEIFEKYNW-----PDKKVRVFTFLIGDEV 375 (1104)
T ss_pred hccccccchhhhHHHHHHHHHHhccccccccccccceeeEEeecCCcccHHHHHHhhcc-----CCCceEEEEEEecccc
Confidence 9988999999999999999975321 1237899999999988887765432 2467999999999753
Q ss_pred -CHHHHHHHHHhCCCEEEEeCCCccHHHHHHHHHHHhccceEee
Q 004469 468 -NHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTN 510 (751)
Q Consensus 468 -n~~lL~~LA~~ggG~~~~i~~~~~l~~~l~~~l~~~~~p~l~d 510 (751)
+...++.+|-.+.|.|..|.+-+++....+..+.-+..|.+..
T Consensus 376 ~~~~~~~wmac~n~gyy~~I~~~~~v~~~~~~y~~vlsRp~vl~ 419 (1104)
T KOG2353|consen 376 YDLDEIQWMACANKGYYVHIISIADVRENVLEYLDVLSRPLVLQ 419 (1104)
T ss_pred cccccchhhhhhCCCceEeccchhhcChHhhhhhhhhccceeec
Confidence 5566999999999999999999999888888888887777654
No 43
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=99.45 E-value=1.4e-12 Score=132.01 Aligned_cols=147 Identities=21% Similarity=0.284 Sum_probs=108.4
Q ss_pred CceEEEEEcCCCCCCCC-------hHHHHHHHHHHHHHhcC--CCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHh
Q 004469 325 RKDVVFLVDVSGSMQGV-------LLEQTKNALSASLSKLN--PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS 395 (751)
Q Consensus 325 ~~~vvfviD~SgSM~g~-------~i~~aK~al~~~L~~L~--~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~ 395 (751)
+++++|+||.||||... +++.+++++..++..+. +.|.+.++.|++....+.+ .+ .+.+.+.+.
T Consensus 2 ~~dvv~~ID~SgSM~~~~~~~~~~k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~~~~~----~~---~~~v~~~~~ 74 (199)
T cd01457 2 NRDYTLLIDKSGSMAEADEAKERSRWEEAQESTRALARKCEEYDSDGITVYLFSGDFRRYDN----VN---SSKVDQLFA 74 (199)
T ss_pred CcCEEEEEECCCcCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCccccCC----cC---HHHHHHHHh
Confidence 57999999999999853 79999999999888765 4678999999888654432 23 444555567
Q ss_pred cCCCCCCCchHHHHHHHHHHhhcC----CC--CccEEEEEecCCCCChhhHHHHHHHHhhcc-CCCCCeEEEEEecCC-C
Q 004469 396 SLVAGGGTNILLPLKQAIKLLSDT----SE--SIPLIFLITDGTVGDERGICNEIKSYLTNT-RSISPRICTFGVGLY-C 467 (751)
Q Consensus 396 ~l~a~GgT~l~~aL~~A~~~l~~~----~~--~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~-~~~~~rIft~GiG~~-~ 467 (751)
++.+.|+|++..+|+.+++.+... .. ....||++|||.+++...+.+.+.+..... ...++.+++++||++ .
T Consensus 75 ~~~p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d~~~~~~~i~~a~~~l~~~~~i~i~~v~vG~~~~ 154 (199)
T cd01457 75 ENSPDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDDKDAVERVIIKASDELDADNELAISFLQIGRDPA 154 (199)
T ss_pred cCCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhhccccCceEEEEEeCCcHH
Confidence 788889999999999887544321 11 147899999999987766655555544321 113578999999986 4
Q ss_pred CHHHHHHHHHh
Q 004469 468 NHYFLQILAQI 478 (751)
Q Consensus 468 n~~lL~~LA~~ 478 (751)
+..+|+.|+..
T Consensus 155 ~~~~L~~ld~~ 165 (199)
T cd01457 155 ATAFLKALDDQ 165 (199)
T ss_pred HHHHHHHHhHH
Confidence 67789999865
No 44
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=99.41 E-value=3.8e-12 Score=122.01 Aligned_cols=142 Identities=23% Similarity=0.373 Sum_probs=105.4
Q ss_pred ceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCC------CCcEEEEEeCCceEEeeccccccCHhHHHHHHHH-HhcCC
Q 004469 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP------QDSFNIIAFNGETHLFSSSMKLASQGTIINATQW-LSSLV 398 (751)
Q Consensus 326 ~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~------~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~-I~~l~ 398 (751)
--++|++|+||||.|++|+..+..++.+++.|.. ...++||+|++.++...+.. ++.++ ...+.
T Consensus 4 lP~~lllDtSgSM~Ge~IealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf~---------~~~nF~~p~L~ 74 (207)
T COG4245 4 LPCYLLLDTSGSMIGEPIEALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQPFT---------DAANFNPPILT 74 (207)
T ss_pred CCEEEEEecCcccccccHHHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEechh---------hHhhcCCCcee
Confidence 3479999999999999999999999999998863 45799999999887765532 12221 12577
Q ss_pred CCCCCchHHHHHHHHHHhhcC---------CCCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCC-CC
Q 004469 399 AGGGTNILLPLKQAIKLLSDT---------SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLY-CN 468 (751)
Q Consensus 399 a~GgT~l~~aL~~A~~~l~~~---------~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~-~n 468 (751)
+.|||.+.+||+.+.++.... ....+.+||+|||.++|.-.--.....+ +.....++..+++|.. +|
T Consensus 75 a~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD~w~~~~~~~~~---~~~~~k~v~a~~~G~~~ad 151 (207)
T COG4245 75 AQGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTDDWQAGAALVFQ---GERRAKSVAAFSVGVQGAD 151 (207)
T ss_pred cCCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcchHHHhHHHHhhh---cccccceEEEEEecccccc
Confidence 889999999999999988643 2345799999999997764332222222 1122346888888876 88
Q ss_pred HHHHHHHHHhC
Q 004469 469 HYFLQILAQIG 479 (751)
Q Consensus 469 ~~lL~~LA~~g 479 (751)
...|++|++.-
T Consensus 152 ~~~L~qit~~V 162 (207)
T COG4245 152 NKTLNQITEKV 162 (207)
T ss_pred cHHHHHHHHhh
Confidence 88899997653
No 45
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.40 E-value=1.6e-11 Score=120.44 Aligned_cols=145 Identities=17% Similarity=0.141 Sum_probs=106.2
Q ss_pred ceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcC---CCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCCC-C
Q 004469 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG-G 401 (751)
Q Consensus 326 ~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a~-G 401 (751)
+|++|++|.|+||....++.+|+.+..+++.+. ...+++|+.|+++.+...+.-...+. ++.++.|.++... |
T Consensus 1 ~DivfllD~S~Si~~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~~~~~~l~~~~~~---~~l~~~i~~i~~~~g 77 (165)
T cd01481 1 KDIVFLIDGSDNVGSGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPRPEFYLNTHSTK---ADVLGAVRRLRLRGG 77 (165)
T ss_pred CCEEEEEeCCCCcCHHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCeeEEEeccccCCH---HHHHHHHHhcccCCC
Confidence 489999999999988899999999999999886 46799999999998765443222333 4455556666654 4
Q ss_pred -CCchHHHHHHHHHHhhcC-C------CCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHH
Q 004469 402 -GTNILLPLKQAIKLLSDT-S------ESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ 473 (751)
Q Consensus 402 -gT~l~~aL~~A~~~l~~~-~------~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~ 473 (751)
+|+...||+.+.+.+... . +.++.+|++|||..++. +... .+.+. ..++.+|++|+|. .|...|+
T Consensus 78 ~~t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~d~--~~~~-a~~lr---~~gv~i~~vG~~~-~~~~eL~ 150 (165)
T cd01481 78 SQLNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQDD--VERP-AVALK---RAGIVPFAIGARN-ADLAELQ 150 (165)
T ss_pred CcccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCcch--HHHH-HHHHH---HCCcEEEEEeCCc-CCHHHHH
Confidence 589999999988765332 1 23468899999998753 2222 22222 2358899999984 6899999
Q ss_pred HHHHhCC
Q 004469 474 ILAQIGR 480 (751)
Q Consensus 474 ~LA~~gg 480 (751)
.||....
T Consensus 151 ~ias~p~ 157 (165)
T cd01481 151 QIAFDPS 157 (165)
T ss_pred HHhCCCc
Confidence 9987663
No 46
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.40 E-value=6.8e-12 Score=147.72 Aligned_cols=156 Identities=24% Similarity=0.300 Sum_probs=115.3
Q ss_pred CCCceEEEEEcCCCCCCCC-hHHHHHHHHHHHHH-hcCCCCcEEEEEeCCc-eEEeeccccccCHhHHHHHHHHHhcCCC
Q 004469 323 VFRKDVVFLVDVSGSMQGV-LLEQTKNALSASLS-KLNPQDSFNIIAFNGE-THLFSSSMKLASQGTIINATQWLSSLVA 399 (751)
Q Consensus 323 ~~~~~vvfviD~SgSM~g~-~i~~aK~al~~~L~-~L~~~d~f~Ii~F~~~-~~~~~~~~~~~t~~~i~~a~~~I~~l~a 399 (751)
.....++||||.||||.+. ++..+|.++..++. .+..+|+|+||.|+++ .....+. + .+...+...|..+..
T Consensus 463 r~~~~vv~vvD~SgSM~~~~rl~~ak~a~~~ll~~a~~~~D~v~lI~F~g~~a~~~~p~----t-~~~~~~~~~L~~l~~ 537 (633)
T TIGR02442 463 RAGNLVIFVVDASGSMAARGRMAAAKGAVLSLLRDAYQKRDKVALITFRGEEAEVLLPP----T-SSVELAARRLEELPT 537 (633)
T ss_pred CCCceEEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEcCC----C-CCHHHHHHHHHhCCC
Confidence 4556899999999999874 99999999988775 4567999999999864 5544332 2 234555677888999
Q ss_pred CCCCchHHHHHHHHHHhhc----CCCCccEEEEEecCCCCCh---hhHH---HHHHHHhhccCCCCCeEEEEEecCC-CC
Q 004469 400 GGGTNILLPLKQAIKLLSD----TSESIPLIFLITDGTVGDE---RGIC---NEIKSYLTNTRSISPRICTFGVGLY-CN 468 (751)
Q Consensus 400 ~GgT~l~~aL~~A~~~l~~----~~~~~~~IiLlTDG~~~~~---~~i~---~~v~~~~~~~~~~~~rIft~GiG~~-~n 468 (751)
+|+|+|..+|..|++.+.. .......|||+|||..+.. .... ..+.+.+. ..++.+++|+++.. ..
T Consensus 538 gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~a~~l~---~~~i~~~vIdt~~~~~~ 614 (633)
T TIGR02442 538 GGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGGEPPTDDARTIAAKLA---ARGILFVVIDTESGFVR 614 (633)
T ss_pred CCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCCCChHHHHHHHHHHHH---hcCCeEEEEeCCCCCcc
Confidence 9999999999999998872 2345678999999998542 1111 12222222 23567777877653 46
Q ss_pred HHHHHHHHHhCCCEEEEe
Q 004469 469 HYFLQILAQIGRGYYDSA 486 (751)
Q Consensus 469 ~~lL~~LA~~ggG~~~~i 486 (751)
..+++.||+.+||.|+.+
T Consensus 615 ~~~~~~lA~~~gg~y~~l 632 (633)
T TIGR02442 615 LGLAEDLARALGGEYVRL 632 (633)
T ss_pred hhHHHHHHHhhCCeEEec
Confidence 789999999999999875
No 47
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=99.26 E-value=1.9e-10 Score=113.98 Aligned_cols=158 Identities=20% Similarity=0.237 Sum_probs=113.3
Q ss_pred ceEEEEEcCCCCCCCC----hHHHHHHHHHHHHHhcCCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHh-cC---
Q 004469 326 KDVVFLVDVSGSMQGV----LLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS-SL--- 397 (751)
Q Consensus 326 ~~vvfviD~SgSM~g~----~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~-~l--- 397 (751)
..|++|||.||||++. ..+.+.+-+..+-.+|.++-.+.++.|+++...+. ..+..+.+.-++.+. ++
T Consensus 2 ArV~LVLD~SGSM~~~yk~G~vQ~~~Er~lalA~~~DdDG~i~v~~Fs~~~~~~~----~vt~~~~~~~v~~~~~~~~~~ 77 (200)
T PF10138_consen 2 ARVYLVLDISGSMRPLYKDGTVQRVVERILALAAQFDDDGEIDVWFFSTEFDRLP----DVTLDNYEGYVDELHAGLPDW 77 (200)
T ss_pred cEEEEEEeCCCCCchhhhCccHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCcCC----CcCHHHHHHHHHHHhcccccc
Confidence 4689999999999863 44555555555567888888899999999987654 356666665544443 22
Q ss_pred CCCCCCchHHHHHHHHHHhhcC-C-CCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHH
Q 004469 398 VAGGGTNILLPLKQAIKLLSDT-S-ESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQIL 475 (751)
Q Consensus 398 ~a~GgT~l~~aL~~A~~~l~~~-~-~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~L 475 (751)
...|+||...+|+.+++..... . ..+..|+++|||.+++..++.+.+++. ....+.+--+|||.. +..+|+.|
T Consensus 78 ~~~G~t~y~~vm~~v~~~y~~~~~~~~P~~VlFiTDG~~~~~~~~~~~i~~a----s~~pifwqFVgiG~~-~f~fL~kL 152 (200)
T PF10138_consen 78 GRMGGTNYAPVMEDVLDHYFKREPSDAPALVLFITDGGPDDRRAIEKLIREA----SDEPIFWQFVGIGDS-NFGFLEKL 152 (200)
T ss_pred CCCCCcchHHHHHHHHHHHhhcCCCCCCeEEEEEecCCccchHHHHHHHHhc----cCCCeeEEEEEecCC-cchHHHHh
Confidence 3448999999999999987633 2 235689999999999988887777766 234466678999997 58999999
Q ss_pred HHhCCC-----EEEEeCCCccH
Q 004469 476 AQIGRG-----YYDSAYDPGSV 492 (751)
Q Consensus 476 A~~ggG-----~~~~i~~~~~l 492 (751)
....|- .++.+.+.+++
T Consensus 153 D~l~gR~vDNa~Ff~~~d~~~l 174 (200)
T PF10138_consen 153 DDLAGRVVDNAGFFAIDDIDEL 174 (200)
T ss_pred hccCCcccCCcCeEecCCcccC
Confidence 985221 24445554444
No 48
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=99.18 E-value=1.9e-09 Score=107.01 Aligned_cols=157 Identities=12% Similarity=0.135 Sum_probs=113.0
Q ss_pred eEEEEEcCCCCCCC-----ChHHHHHHHHHHHH---HhcCCCCcEEEEEeCC-ceEEeeccccccCHhHHHHHHHHHhcC
Q 004469 327 DVVFLVDVSGSMQG-----VLLEQTKNALSASL---SKLNPQDSFNIIAFNG-ETHLFSSSMKLASQGTIINATQWLSSL 397 (751)
Q Consensus 327 ~vvfviD~SgSM~g-----~~i~~aK~al~~~L---~~L~~~d~f~Ii~F~~-~~~~~~~~~~~~t~~~i~~a~~~I~~l 397 (751)
.++|++|.|.||.. .+++.+|+++..++ -...++++++|+.|.+ .+....+... +...++..++.+
T Consensus 5 a~vi~lD~S~sM~a~D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v~~plT~-----D~~~~~~~L~~i 79 (187)
T cd01452 5 ATMICIDNSEYMRNGDYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEVLVTLTN-----DQGKILSKLHDV 79 (187)
T ss_pred EEEEEEECCHHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEEEECCCC-----CHHHHHHHHHhC
Confidence 47899999999974 48999999998875 2334678999999999 7776655322 255566667777
Q ss_pred CCCCCCchHHHHHHHHHHhhcCCC--C-ccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCC-CCHHHHH
Q 004469 398 VAGGGTNILLPLKQAIKLLSDTSE--S-IPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLY-CNHYFLQ 473 (751)
Q Consensus 398 ~a~GgT~l~~aL~~A~~~l~~~~~--~-~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~-~n~~lL~ 473 (751)
..+|+|+|..||+.|...+...+. . .+.|+|++++...++..+.+.+++..+ .+++++.+|+|.. .|...|+
T Consensus 80 ~~~g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d~~~i~~~~~~lkk----~~I~v~vI~~G~~~~~~~~l~ 155 (187)
T cd01452 80 QPKGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEEDEKDLVKLAKRLKK----NNVSVDIINFGEIDDNTEKLT 155 (187)
T ss_pred CCCCcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCCHHHHHHHHHHHHH----cCCeEEEEEeCCCCCCHHHHH
Confidence 888999999999999999865433 3 366777777765666666665555433 3589999999975 4677788
Q ss_pred HHHHhCC----CEEEEeCCCccH
Q 004469 474 ILAQIGR----GYYDSAYDPGSV 492 (751)
Q Consensus 474 ~LA~~gg----G~~~~i~~~~~l 492 (751)
.+-+.-+ -++..+.....+
T Consensus 156 ~~~~~~~~~~~s~~~~~~~~~~~ 178 (187)
T cd01452 156 AFIDAVNGKDGSHLVSVPPGENL 178 (187)
T ss_pred HHHHHhcCCCCceEEEeCCCCch
Confidence 7766542 244555554433
No 49
>PRK10997 yieM hypothetical protein; Provisional
Probab=99.13 E-value=1.2e-09 Score=122.44 Aligned_cols=144 Identities=18% Similarity=0.163 Sum_probs=106.8
Q ss_pred CCCCceEEEEEcCCCCCCCChHHHHHHHHHHH-HHhcCCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCCC
Q 004469 322 KVFRKDVVFLVDVSGSMQGVLLEQTKNALSAS-LSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG 400 (751)
Q Consensus 322 ~~~~~~vvfviD~SgSM~g~~i~~aK~al~~~-L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a~ 400 (751)
...++.++++||+||||.|.+.+.||..+..+ .-.+..++++.++.|++....+. . .....+.++++++... .+
T Consensus 320 ~~~kGpiII~VDtSGSM~G~ke~~AkalAaAL~~iAl~q~dr~~li~Fs~~i~~~~--l--~~~~gl~~ll~fL~~~-f~ 394 (487)
T PRK10997 320 EQPRGPFIVCVDTSGSMGGFNEQCAKAFCLALMRIALAENRRCYIMLFSTEVVTYE--L--TGPDGLEQAIRFLSQS-FR 394 (487)
T ss_pred CCCCCcEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCceeec--c--CCccCHHHHHHHHHHh-cC
Confidence 34678999999999999999888888744443 34677899999999999876541 1 2345678888888743 57
Q ss_pred CCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCCC-hhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHH
Q 004469 401 GGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGD-ERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ 473 (751)
Q Consensus 401 GgT~l~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~-~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~ 473 (751)
|||++..+|+.+++.+....-....||++||+.... ..++.+.++.... ..+.|+|++.||+..+..+++
T Consensus 395 GGTDl~~aL~~al~~l~~~~~r~adIVVISDF~~~~~~eel~~~L~~Lk~---~~~~rf~~l~i~~~~~p~l~~ 465 (487)
T PRK10997 395 GGTDLAPCLRAIIEKMQGREWFDADAVVISDFIAQRLPDELVAKVKELQR---QHQHRFHAVAMSAHGKPGIMR 465 (487)
T ss_pred CCCcHHHHHHHHHHHHcccccCCceEEEECCCCCCCChHHHHHHHHHHHH---hcCcEEEEEEeCCCCCchHHH
Confidence 999999999999998865433446899999997643 4445555544422 135799999999876766644
No 50
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.08 E-value=7.1e-10 Score=121.96 Aligned_cols=144 Identities=24% Similarity=0.277 Sum_probs=105.9
Q ss_pred ceEEEEEcCCCCCCCChHHHHHHHHHHHH-HhcCCCCcEEEEEeCCceEEeeccccccCH-hHHHHHHHHHhcCCCCCCC
Q 004469 326 KDVVFLVDVSGSMQGVLLEQTKNALSASL-SKLNPQDSFNIIAFNGETHLFSSSMKLASQ-GTIINATQWLSSLVAGGGT 403 (751)
Q Consensus 326 ~~vvfviD~SgSM~g~~i~~aK~al~~~L-~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~-~~i~~a~~~I~~l~a~GgT 403 (751)
+.|+++||.||||.|.+.+.||..+..++ -.|.++-++-++.|++.+.... .+.+ .+++++++++...-++| |
T Consensus 273 GpvilllD~SGSM~G~~e~~AKAvalAl~~~alaenR~~~~~lF~s~~~~~e----l~~k~~~~~e~i~fL~~~f~GG-T 347 (437)
T COG2425 273 GPVILLLDKSGSMSGFKEQWAKAVALALMRIALAENRDCYVILFDSEVIEYE----LYEKKIDIEELIEFLSYVFGGG-T 347 (437)
T ss_pred CCEEEEEeCCCCcCCcHHHHHHHHHHHHHHHHHHhccceEEEEecccceeee----ecCCccCHHHHHHHHhhhcCCC-C
Confidence 78999999999999999999997655554 4667788999999999554332 2233 37899999998766655 9
Q ss_pred chHHHHHHHHHHhhcCCCCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHHh
Q 004469 404 NILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQI 478 (751)
Q Consensus 404 ~l~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~~ 478 (751)
|+..||..|++.++...-....||++|||...-.......+.+..+ ..+.++|++-||.+-.. -|.+++..
T Consensus 348 D~~~~l~~al~~~k~~~~~~adiv~ITDg~~~~~~~~~~~v~e~~k---~~~~rl~aV~I~~~~~~-~l~~Isd~ 418 (437)
T COG2425 348 DITKALRSALEDLKSRELFKADIVVITDGEDERLDDFLRKVKELKK---RRNARLHAVLIGGYGKP-GLMRISDH 418 (437)
T ss_pred ChHHHHHHHHHHhhcccccCCCEEEEeccHhhhhhHHHHHHHHHHH---HhhceEEEEEecCCCCc-ccceeeee
Confidence 9999999999999865444578999999986533444444444432 23579999999987333 34445443
No 51
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=99.06 E-value=6e-09 Score=108.95 Aligned_cols=168 Identities=15% Similarity=0.160 Sum_probs=109.5
Q ss_pred CceEEEEEcCCCCCCCC-----hHHHHHHHHHHHHHhcCCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCC
Q 004469 325 RKDVVFLVDVSGSMQGV-----LLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA 399 (751)
Q Consensus 325 ~~~vvfviD~SgSM~g~-----~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a 399 (751)
.-+|+|+||.|.||... .++ +|..+..+++.|. .++|+|+.|++++....|...+.+. +.+.+.++.+..
T Consensus 60 ~~qIvlaID~S~SM~~~~~~~~ale-ak~lIs~al~~Le-~g~vgVv~Fg~~~~~v~Plt~d~~~---~a~~~~l~~~~f 134 (266)
T cd01460 60 DYQILIAIDDSKSMSENNSKKLALE-SLCLVSKALTLLE-VGQLGVCSFGEDVQILHPFDEQFSS---QSGPRILNQFTF 134 (266)
T ss_pred CceEEEEEecchhcccccccccHHH-HHHHHHHHHHhCc-CCcEEEEEeCCCceEeCCCCCCchh---hHHHHHhCcccC
Confidence 57899999999999742 344 7777888888777 5799999999998877665443332 556666665444
Q ss_pred C-CCCchHHHHHHHHHHhhcCC----CC--ccEEEEEecCCCCChhhHH-HHHHHHhhccCCCCCeEEEEEecCCC-CHH
Q 004469 400 G-GGTNILLPLKQAIKLLSDTS----ES--IPLIFLITDGTVGDERGIC-NEIKSYLTNTRSISPRICTFGVGLYC-NHY 470 (751)
Q Consensus 400 ~-GgT~l~~aL~~A~~~l~~~~----~~--~~~IiLlTDG~~~~~~~i~-~~v~~~~~~~~~~~~rIft~GiG~~~-n~~ 470 (751)
. +|||+..+|..+.+.+.... +. .+.+||+|||...+..... ..++.... .++.++.+++-+.. +..
T Consensus 135 ~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~~~~~~r~a~e----~~i~l~~I~ld~~~~~~S 210 (266)
T cd01460 135 QQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGAQKVRLREARE----QNVFVVFIIIDNPDNKQS 210 (266)
T ss_pred CCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccHHHHHHHHHHH----cCCeEEEEEEcCCCCCCC
Confidence 4 99999999999999986541 11 2789999999943222222 22333322 35889999997641 122
Q ss_pred H----------------HHHHHHhCCCEEEEeCCCccHHHHHHHHHH
Q 004469 471 F----------------LQILAQIGRGYYDSAYDPGSVDYRIRRFFT 501 (751)
Q Consensus 471 l----------------L~~LA~~ggG~~~~i~~~~~l~~~l~~~l~ 501 (751)
. -+.+-...--+|..+.+-+++++.+...++
T Consensus 211 I~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~~~~~~lp~~l~~~lr 257 (266)
T cd01460 211 ILDIKVVSFKNDKSGVITPYLDEFPFPYYVIVRDLNQLPSVLSDALR 257 (266)
T ss_pred cccccccccCCCCccHHHHHHhcCCCCeEEEecChhHhHHHHHHHHH
Confidence 2 223333344455556666666555544433
No 52
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=98.91 E-value=3.4e-08 Score=101.39 Aligned_cols=141 Identities=18% Similarity=0.226 Sum_probs=97.4
Q ss_pred ceEEEEEcCCCCCC----C---ChHHHHHHHHHHHHHh---cCCCCcEEEEEeCCceE----------EeeccccccCHh
Q 004469 326 KDVVFLVDVSGSMQ----G---VLLEQTKNALSASLSK---LNPQDSFNIIAFNGETH----------LFSSSMKLASQG 385 (751)
Q Consensus 326 ~~vvfviD~SgSM~----g---~~i~~aK~al~~~L~~---L~~~d~f~Ii~F~~~~~----------~~~~~~~~~t~~ 385 (751)
..++|+||+|.||. + .+++.+++++..++++ -.++|+++|+.|+++.. .+.+ +...+.+
T Consensus 2 e~ivf~iDvS~SM~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~~~-l~~~~~~ 80 (218)
T cd01458 2 ESVVFLVDVSPSMFESKDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVLLD-LDTPGAE 80 (218)
T ss_pred cEEEEEEeCCHHHcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEeec-CCCCCHH
Confidence 35899999999994 2 5899999999999998 47899999999999742 1222 2334556
Q ss_pred HHHHHHHHHhcC-C-------CCCCCchHHHHHHHHHHhhc--CCCCccEEEEEecCCCCCh--hhHHHHHHHHhhccCC
Q 004469 386 TIINATQWLSSL-V-------AGGGTNILLPLKQAIKLLSD--TSESIPLIFLITDGTVGDE--RGICNEIKSYLTNTRS 453 (751)
Q Consensus 386 ~i~~a~~~I~~l-~-------a~GgT~l~~aL~~A~~~l~~--~~~~~~~IiLlTDG~~~~~--~~i~~~v~~~~~~~~~ 453 (751)
.++...+.++.- . ..++|++..||..|.+++.. .....+.|||+|||..... ......+...+.....
T Consensus 81 ~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p~~~~~~~~~~~~~~a~~l~~ 160 (218)
T cd01458 81 RVEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDPHGGDSIKDSQAAVKAEDLKD 160 (218)
T ss_pred HHHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhccccccccEEEEECCCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 666666555421 1 34789999999999999975 2345689999999975421 1111222222222233
Q ss_pred CCCeEEEEEecCCC
Q 004469 454 ISPRICTFGVGLYC 467 (751)
Q Consensus 454 ~~~rIft~GiG~~~ 467 (751)
.++.+++||+|...
T Consensus 161 ~gI~i~~i~i~~~~ 174 (218)
T cd01458 161 KGIELELFPLSSPG 174 (218)
T ss_pred CCcEEEEEecCCCC
Confidence 46899999998764
No 53
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=98.82 E-value=7.2e-08 Score=96.44 Aligned_cols=171 Identities=17% Similarity=0.224 Sum_probs=103.5
Q ss_pred CCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcC-CCCcEEEEEeCCce-------EEeeccccccCHhHHHH------
Q 004469 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN-PQDSFNIIAFNGET-------HLFSSSMKLASQGTIIN------ 389 (751)
Q Consensus 324 ~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~-~~d~f~Ii~F~~~~-------~~~~~~~~~~t~~~i~~------ 389 (751)
...-|.||||+||||.|.+++.|..++..+.+.|. -+..+.|+.|.+.. +.|...-.+..+.-+.+
T Consensus 11 ~d~~VtlLID~SGSMrgr~~~vA~~~adila~aL~~~gvp~EVlGFtT~aw~gg~~~~~w~~~G~p~~pgrln~l~h~vy 90 (219)
T PF11775_consen 11 RDTVVTLLIDCSGSMRGRPIEVAALCADILARALERCGVPVEVLGFTTRAWKGGRSREAWLAAGRPRYPGRLNDLRHIVY 90 (219)
T ss_pred CCeEEEEEEeCCcCCCCChHHHHHHHHHHHHHHHHhCCCCeEEEeeecCCcCCcchHHHHHhcCCCCCChHHHHHHHHHH
Confidence 34567799999999999999988766666666664 37789999998873 11221111112222222
Q ss_pred ---------HHHHHh-cCCCC-CCCch-HHHHHHHHHHhhcCCCCccEEEEEecCCCCChh-------hHH-HHHHHHhh
Q 004469 390 ---------ATQWLS-SLVAG-GGTNI-LLPLKQAIKLLSDTSESIPLIFLITDGTVGDER-------GIC-NEIKSYLT 449 (751)
Q Consensus 390 ---------a~~~I~-~l~a~-GgT~l-~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~~-------~i~-~~v~~~~~ 449 (751)
+...+. -+..+ ...|+ ..||..|.+.+.+.+...+.++++|||.|.+.. ..+ ..++..++
T Consensus 91 k~a~~~wrraR~~l~~m~~~~~~~eniDGeAl~~a~~rL~~r~e~rkiLiViSDG~P~d~st~~~n~~~~L~~HLr~vi~ 170 (219)
T PF11775_consen 91 KDADTPWRRARRNLGLMMREGLLKENIDGEALRWAAERLLARPEQRKILIVISDGAPADDSTLSANDGDYLDAHLRQVIA 170 (219)
T ss_pred HhcCChhhhHHHhHHHHhhccccccCCcHHHHHHHHHHHHcCCccceEEEEEeCCCcCcccccccCChHHHHHHHHHHHH
Confidence 222222 12222 33444 678999988887777778899999999986321 111 11222222
Q ss_pred c-cCCCCCeEEEEEecCCCCHHHHHHHHHhCCCEEEEeCCCccHHHHHHHHHHHh
Q 004469 450 N-TRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAA 503 (751)
Q Consensus 450 ~-~~~~~~rIft~GiG~~~n~~lL~~LA~~ggG~~~~i~~~~~l~~~l~~~l~~~ 503 (751)
. .....+.+.++|||.++..+. + ++..+.+.+++...+...+.++
T Consensus 171 ~ie~~~~Vel~aiGIg~D~~~yY-~--------~~~~i~~~e~l~~~~~~~l~~l 216 (219)
T PF11775_consen 171 EIETRSDVELIAIGIGHDVSRYY-R--------RAVTIDDVEELGGALFEQLARL 216 (219)
T ss_pred HHhccCCcEEEEEEcCCCchhhc-c--------cceecCCHHHHHHHHHHHHHHH
Confidence 1 112357899999998865522 1 3445677777777766655544
No 54
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=98.56 E-value=9.3e-07 Score=91.05 Aligned_cols=128 Identities=22% Similarity=0.259 Sum_probs=77.7
Q ss_pred CCCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHh--cCCCC
Q 004469 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS--SLVAG 400 (751)
Q Consensus 323 ~~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~--~l~a~ 400 (751)
..+..+++++|+||||.+.. ...-..+..+....+ ++.++.|+++.....+.+... ...+++..+. ....+
T Consensus 55 ~~~~~lvvl~DvSGSM~~~s-~~~l~~~~~l~~~~~---~~~~f~F~~~l~~vT~~l~~~---~~~~~l~~~~~~~~~~~ 127 (222)
T PF05762_consen 55 RKPRRLVVLCDVSGSMAGYS-EFMLAFLYALQRQFR---RVRVFVFSTRLTEVTPLLRRR---DPEEALARLSALVQSFG 127 (222)
T ss_pred CCCccEEEEEeCCCChHHHH-HHHHHHHHHHHHhCC---CEEEEEEeeehhhhhhhhccC---CHHHHHHHHHhhccCCC
Confidence 34569999999999997621 112222333333333 889999999876554433212 2233444443 23366
Q ss_pred CCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCC-ChhhHHHHHHHHhhccCCCCCeEEEE
Q 004469 401 GGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVG-DERGICNEIKSYLTNTRSISPRICTF 461 (751)
Q Consensus 401 GgT~l~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~-~~~~i~~~v~~~~~~~~~~~~rIft~ 461 (751)
|||+|..+|+.+.+......-....||++|||.-+ +.....+.+.+.... ..+++-+
T Consensus 128 GgTdi~~aL~~~~~~~~~~~~~~t~vvIiSDg~~~~~~~~~~~~l~~l~~r----~~rviwL 185 (222)
T PF05762_consen 128 GGTDIGQALREFLRQYARPDLRRTTVVIISDGWDTNDPEPLAEELRRLRRR----GRRVIWL 185 (222)
T ss_pred CccHHHHHHHHHHHHhhcccccCcEEEEEecccccCChHHHHHHHHHHHHh----CCEEEEE
Confidence 99999999999998876321135689999999544 444445555444322 2455554
No 55
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.43 E-value=1.4e-06 Score=98.51 Aligned_cols=168 Identities=19% Similarity=0.218 Sum_probs=99.5
Q ss_pred CCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcC-CCCcEEEEEeCCceE-------EeeccccccCHhHH--------
Q 004469 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN-PQDSFNIIAFNGETH-------LFSSSMKLASQGTI-------- 387 (751)
Q Consensus 324 ~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~-~~d~f~Ii~F~~~~~-------~~~~~~~~~t~~~i-------- 387 (751)
...-|.|+||.||||.+.++..|+..+..+.+.|. .+..+.|+.|.+... .|...-.+..+.-+
T Consensus 391 ~D~~V~LLID~SGSM~~r~~~vA~~~a~iLa~aL~~~gIp~eVlGFtt~aw~gg~~re~w~~~g~p~~PgRlN~l~hiiy 470 (600)
T TIGR01651 391 RDTVVTLLIDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTRAWKGGQSREKWLKAGKPAAPGRLNDLRHIIY 470 (600)
T ss_pred CCcEEEEEEECCccCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEeecccccccccchHHHHhcCCCCCCcccchhhhhhh
Confidence 44668899999999999988877655544445554 377899999987631 11111111111111
Q ss_pred -------HHHHHHHhc-CCCC-CCCch-HHHHHHHHHHhhcCCCCccEEEEEecCCCCChhh--------H---HHHHHH
Q 004469 388 -------INATQWLSS-LVAG-GGTNI-LLPLKQAIKLLSDTSESIPLIFLITDGTVGDERG--------I---CNEIKS 446 (751)
Q Consensus 388 -------~~a~~~I~~-l~a~-GgT~l-~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~~~--------i---~~~v~~ 446 (751)
.++...+.. +..+ ..-|+ ..||..|.+.|...+...+.+++||||.|.+... . +..+..
T Consensus 471 k~ad~~wr~~r~~l~~mm~~~~~~eN~DGeAl~wa~~rL~~R~e~rKiL~ViSDG~P~D~~TlsvN~~~~l~~hLr~vi~ 550 (600)
T TIGR01651 471 KSADAPWRRARRNLGLMMREGLLKENIDGEALMWAHQRLIARPEQRRILMMISDGAPVDDSTLSVNPGNYLERHLRAVIE 550 (600)
T ss_pred hccccchhhhccchhhhhhccccccCCchHHHHHHHHHHhcCcccceEEEEEeCCCcCCccccccCchhHHHHHHHHHHH
Confidence 111111110 1111 11222 6799999998887777888999999999864221 1 122222
Q ss_pred HhhccCCCCCeEEEEEecCCCCHHHHHHHHHhCCCEEEEeCCCccHHHHHHHHHHH
Q 004469 447 YLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTA 502 (751)
Q Consensus 447 ~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~~ggG~~~~i~~~~~l~~~l~~~l~~ 502 (751)
.+.. ..++.+.++|||.++..++ .++..|.+.+++...|.+.|..
T Consensus 551 ~~e~--~~~vel~aigIg~Dv~r~Y---------~~~v~i~~~~eL~~~~~~qLa~ 595 (600)
T TIGR01651 551 EIET--RSPVELLAIGIGHDVTRYY---------RRAVTIVDAEELAGAMTEQLAA 595 (600)
T ss_pred HHhc--cCCceEEEeeccccHHHHc---------cccceecCHHHHHHHHHHHHHH
Confidence 2222 2358899999999855443 3344677777777766555443
No 56
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.38 E-value=9.4e-06 Score=86.84 Aligned_cols=157 Identities=24% Similarity=0.290 Sum_probs=110.4
Q ss_pred CCCceEEEEEcCCCCCC----CChHHHHHHHHHHHHHhcCCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCC
Q 004469 323 VFRKDVVFLVDVSGSMQ----GVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV 398 (751)
Q Consensus 323 ~~~~~vvfviD~SgSM~----g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~ 398 (751)
.....+++++|+|-||. ..++.+..-||..++..--++|.+.+|+|+...+.. +.+ .+..+.
T Consensus 461 rt~aAvallvDtS~SM~~eGRw~PmKQtALALhHLv~TrfrGD~l~~i~Fgr~A~~v-------~v~-------eLt~l~ 526 (652)
T COG4867 461 RTQAAVALLVDTSFSMVMEGRWLPMKQTALALHHLVCTRFRGDALQIIAFGRYARTV-------TAA-------ELTGLA 526 (652)
T ss_pred hcccceeeeeeccHHHHHhccCCchHHHHHHHHHHHHhcCCCcceEEEeccchhccc-------CHH-------HHhcCC
Confidence 34577999999999996 346677777777788877789999999999876532 111 123333
Q ss_pred C--CCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCC-----------------ChhhHHHHHHHHhhccCCCCCeEE
Q 004469 399 A--GGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVG-----------------DERGICNEIKSYLTNTRSISPRIC 459 (751)
Q Consensus 399 a--~GgT~l~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~-----------------~~~~i~~~v~~~~~~~~~~~~rIf 459 (751)
. .-|||+..+|..|-+.+...++..++|+++|||+++ ++..+...++.. .+-...++.+.
T Consensus 527 ~v~eqgTNlhhaL~LA~r~l~Rh~~~~~~il~vTDGePtAhle~~DG~~~~f~yp~DP~t~~~Tvr~~-d~~~r~G~q~t 605 (652)
T COG4867 527 GVYEQGTNLHHALALAGRHLRRHAGAQPVVLVVTDGEPTAHLEDGDGTSVFFDYPPDPRTIAHTVRGF-DDMARLGAQVT 605 (652)
T ss_pred CccccccchHHHHHHHHHHHHhCcccCceEEEEeCCCccccccCCCCceEecCCCCChhHHHHHHHHH-HHHHhccceee
Confidence 2 379999999999999988767778899999999975 122233333332 22122346677
Q ss_pred EEEecCCCC-HHHHHHHHHhCCCEEEEeCCCccHHHH
Q 004469 460 TFGVGLYCN-HYFLQILAQIGRGYYDSAYDPGSVDYR 495 (751)
Q Consensus 460 t~GiG~~~n-~~lL~~LA~~ggG~~~~i~~~~~l~~~ 495 (751)
+|-+|.+.. ..|++.+|+..+|..++ .+.+.+-+.
T Consensus 606 ~FrLg~DpgL~~Fv~qva~rv~G~vv~-pdldglGaa 641 (652)
T COG4867 606 IFRLGSDPGLARFIDQVARRVQGRVVV-PDLDGLGAA 641 (652)
T ss_pred EEeecCCHhHHHHHHHHHHHhCCeEEe-cCcchhhHH
Confidence 777887644 46899999999999885 444555443
No 57
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=98.38 E-value=1.7e-06 Score=80.93 Aligned_cols=96 Identities=19% Similarity=0.263 Sum_probs=66.8
Q ss_pred EEEEEcCCCCCCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCCCCCCchHH
Q 004469 328 VVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNILL 407 (751)
Q Consensus 328 vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a~GgT~l~~ 407 (751)
+++.+|+||||..+.+.+.-..+..+++.. +.++.|+.|+..++.-... .. .+.....+ .+..+|||++..
T Consensus 1 i~vaiDtSGSis~~~l~~fl~ev~~i~~~~--~~~v~vi~~D~~v~~~~~~----~~--~~~~~~~~-~~~GgGGTdf~p 71 (126)
T PF09967_consen 1 IVVAIDTSGSISDEELRRFLSEVAGILRRF--PAEVHVIQFDAEVQDVQVF----RS--LEDELRDI-KLKGGGGTDFRP 71 (126)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHhC--CCCEEEEEECCEeeeeeEE----ec--cccccccc-ccCCCCCCcchH
Confidence 578999999999877777666677777777 5579999999998653211 11 11111111 455679999999
Q ss_pred HHHHHHHHhhcCCCCccEEEEEecCCCCC
Q 004469 408 PLKQAIKLLSDTSESIPLIFLITDGTVGD 436 (751)
Q Consensus 408 aL~~A~~~l~~~~~~~~~IiLlTDG~~~~ 436 (751)
+++.+.+.. .....+|+||||..+.
T Consensus 72 vf~~~~~~~----~~~~~vi~fTDg~~~~ 96 (126)
T PF09967_consen 72 VFEYLEENR----PRPSVVIYFTDGEGWP 96 (126)
T ss_pred HHHHHHhcC----CCCCEEEEEeCCCCCC
Confidence 999876642 3456788999999753
No 58
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=98.35 E-value=1.5e-05 Score=79.46 Aligned_cols=165 Identities=18% Similarity=0.202 Sum_probs=116.1
Q ss_pred EEcCCCCCCC-----ChHHHHHHHHHHHHHhc---CCCCcEEEEEeCCc-eEEeeccccccCHhHHHHHHHHHhcCCCCC
Q 004469 331 LVDVSGSMQG-----VLLEQTKNALSASLSKL---NPQDSFNIIAFNGE-THLFSSSMKLASQGTIINATQWLSSLVAGG 401 (751)
Q Consensus 331 viD~SgSM~g-----~~i~~aK~al~~~L~~L---~~~d~f~Ii~F~~~-~~~~~~~~~~~t~~~i~~a~~~I~~l~a~G 401 (751)
|||.|.+|.. .++....+++..+++.. +|-.+++|+...+. ++.+.+. .-+....-+++..+....+.|
T Consensus 1 viD~S~~m~~~D~~PtRl~~~~~~l~~Fv~eff~qNPiSqlgii~~~~~~a~~ls~l--sgn~~~h~~~L~~~~~~~~~G 78 (193)
T PF04056_consen 1 VIDMSEAMREKDLKPTRLQCVLKALEEFVREFFDQNPISQLGIIVMRDGRAERLSEL--SGNPQEHIEALKKLRKLEPSG 78 (193)
T ss_pred CeechHhHHhCcCCccHHHHHHHHHHHHHHHHHhcCChhheeeeeeecceeEEeeec--CCCHHHHHHHHHHhccCCCCC
Confidence 6899999974 47777888887777654 46679999999876 4444432 235555666666666667889
Q ss_pred CCchHHHHHHHHHHhhcCC-CCccEEEEEecCCCC-ChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHHhC
Q 004469 402 GTNILLPLKQAIKLLSDTS-ESIPLIFLITDGTVG-DERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIG 479 (751)
Q Consensus 402 gT~l~~aL~~A~~~l~~~~-~~~~~IiLlTDG~~~-~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~~g 479 (751)
...|..+|+.|...+...+ ...|.|+++.-...+ |...+.+.++...+ .++|+..||++.. -+.++.|++.|
T Consensus 79 ~~SLqN~Le~A~~~L~~~p~~~srEIlvi~gSl~t~Dp~di~~ti~~l~~----~~IrvsvI~laaE--v~I~k~i~~~T 152 (193)
T PF04056_consen 79 EPSLQNGLEMARSSLKHMPSHGSREILVIFGSLTTCDPGDIHETIESLKK----ENIRVSVISLAAE--VYICKKICKET 152 (193)
T ss_pred ChhHHHHHHHHHHHHhhCccccceEEEEEEeecccCCchhHHHHHHHHHH----cCCEEEEEEEhHH--HHHHHHHHHhh
Confidence 9999999999999997543 234666666644333 55555555554433 3589999999884 67899999999
Q ss_pred CCEEEEeCCCccHHHHHHHHHHHhccce
Q 004469 480 RGYYDSAYDPGSVDYRIRRFFTAASSVF 507 (751)
Q Consensus 480 gG~~~~i~~~~~l~~~l~~~l~~~~~p~ 507 (751)
+|.|..+-+.+.+.+ ++.....|.
T Consensus 153 ~G~y~V~lde~H~~~----lL~~~~~PP 176 (193)
T PF04056_consen 153 GGTYGVILDEDHFKE----LLMEHVPPP 176 (193)
T ss_pred CCEEEEecCHHHHHH----HHHhhCCCC
Confidence 999998888765544 444445443
No 59
>COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.22 E-value=2.2e-05 Score=87.70 Aligned_cols=169 Identities=24% Similarity=0.288 Sum_probs=126.7
Q ss_pred CCCCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhc-CCCC
Q 004469 322 KVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSS-LVAG 400 (751)
Q Consensus 322 ~~~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~-l~a~ 400 (751)
...+.+..+++|+|+||.+..++.++.+...++..+.+.+.+.++.|........+.. ...+...+...|.. +.+.
T Consensus 34 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~ 110 (399)
T COG2304 34 LLVPANLTLAIDTSGSMTGALLELAKSAAIELVNGLNPGDLLSIVTFAGSADVLIPPT---GATNKESITAAIDQSLQAG 110 (399)
T ss_pred cccCcceEEEeccCCCccchhHHHHHHHHHHHhcccCCCCceEEEEecCCcceecCcc---cccCHHHHHHHHhhhhccc
Confidence 3567899999999999999889999999999999999999999999999655544332 22344455555674 7888
Q ss_pred CCCchHHHHHHHHHHhhcC--CCCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHHh
Q 004469 401 GGTNILLPLKQAIKLLSDT--SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQI 478 (751)
Q Consensus 401 GgT~l~~aL~~A~~~l~~~--~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~~ 478 (751)
|.|.+...+..+++.+... .+....+.+.|||..+-.......+...........+.+.++|+|.+.|.+++..++..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tdg~~~~~~~d~~~~~~~~~~~~~~~i~~~~~g~~~~~n~~~~~~~~~~ 190 (399)
T COG2304 111 GATAVEASLSLAVELAAKALPRGTLNRILLLTDGENNLGLVDPSRLSALAKLAAGKGIVLDTLGLGDDVNEDELTGIAAA 190 (399)
T ss_pred cccHHHHHHHHHHHHhhhcCCccceeeEeeeccCccccCCCCHHHHHHHhcccccCceEEEEEecccccchhhhhhhhhc
Confidence 9999999999988877642 45567899999988642211112222222222234688999999999999999999999
Q ss_pred CCCEEEEeCCCccHH
Q 004469 479 GRGYYDSAYDPGSVD 493 (751)
Q Consensus 479 ggG~~~~i~~~~~l~ 493 (751)
..|...++.......
T Consensus 191 ~~g~l~~~~~~~~~~ 205 (399)
T COG2304 191 ANGNLAFIYLSSLSE 205 (399)
T ss_pred cCcccccccCccccc
Confidence 999888877665444
No 60
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=98.18 E-value=5.9e-06 Score=91.15 Aligned_cols=177 Identities=15% Similarity=0.141 Sum_probs=120.3
Q ss_pred CCceEEEEEcCCCCCCCChHHH-------HHHHHHHHHHhcC-CCCcEEEEEeCCceEEee--ccccccCHhHHHHHHHH
Q 004469 324 FRKDVVFLVDVSGSMQGVLLEQ-------TKNALSASLSKLN-PQDSFNIIAFNGETHLFS--SSMKLASQGTIINATQW 393 (751)
Q Consensus 324 ~~~~vvfviD~SgSM~g~~i~~-------aK~al~~~L~~L~-~~d~f~Ii~F~~~~~~~~--~~~~~~t~~~i~~a~~~ 393 (751)
.-.-+.+++|+|-||.. +++. .++||..+-..+. -++.+.+..|.+..+.|. .....++...-...-..
T Consensus 445 ~Dla~TLLvD~S~St~a-~mdetrRvidl~~eaL~~la~~~qa~gd~~~~~~fts~rr~~vri~tvk~FDes~~~~~~~R 523 (637)
T COG4548 445 HDLAFTLLVDVSASTDA-KMDETRRVIDLFHEALLVLAHGHQALGDSEDILDFTSRRRPWVRINTVKDFDESMGETVGPR 523 (637)
T ss_pred ccceeEEEeecccchHH-HhhhhhhhHHHHHHHHHHhhchhhhhCCHHHhcCchhhcCcceeeeeeeccccccccccchh
Confidence 34567899999999974 4444 4555554433333 378888999988765432 22333333333344455
Q ss_pred HhcCCCCCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCCChh-----hHHHHHHHHhhccCCCCCeEEEEEecCCCC
Q 004469 394 LSSLVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDER-----GICNEIKSYLTNTRSISPRICTFGVGLYCN 468 (751)
Q Consensus 394 I~~l~a~GgT~l~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~~-----~i~~~v~~~~~~~~~~~~rIft~GiG~~~n 468 (751)
|..+.++--|.+..||+.|.+.+...+.+.+.+|++|||.+++-. .-+..-++++...+..++.+|.|-+....-
T Consensus 524 ImALePg~ytR~G~AIR~As~kL~~rpq~qklLivlSDGkPnd~d~YEgr~gIeDTr~AV~eaRk~Gi~VF~Vtld~ea~ 603 (637)
T COG4548 524 IMALEPGYYTRDGAAIRHASAKLMERPQRQKLLIVLSDGKPNDFDHYEGRFGIEDTREAVIEARKSGIEVFNVTLDREAI 603 (637)
T ss_pred heecCccccccccHHHHHHHHHHhcCcccceEEEEecCCCcccccccccccchhhHHHHHHHHHhcCceEEEEEecchhh
Confidence 778899999999999999999887777888999999999997322 122223444444445678888888877644
Q ss_pred HHHHHHHHHhCCCEEEEeCCCccHHHHHHHHHHHhc
Q 004469 469 HYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAAS 504 (751)
Q Consensus 469 ~~lL~~LA~~ggG~~~~i~~~~~l~~~l~~~l~~~~ 504 (751)
.++ -+..+.+-|.+|.+...++..+-.+++++.
T Consensus 604 ~y~---p~~fgqngYa~V~~v~~LP~~L~~lyrkL~ 636 (637)
T COG4548 604 SYL---PALFGQNGYAFVERVAQLPGALPPLYRKLL 636 (637)
T ss_pred hhh---HHHhccCceEEccchhhcchhHHHHHHHhc
Confidence 432 234566677889998999988888877653
No 61
>KOG3768 consensus DEAD box RNA helicase [General function prediction only]
Probab=98.14 E-value=2.1e-05 Score=87.25 Aligned_cols=173 Identities=20% Similarity=0.257 Sum_probs=114.9
Q ss_pred EEEEEcCCCCCCC------ChHHHHHHHHHHHHHhcC-----CCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhc
Q 004469 328 VVFLVDVSGSMQG------VLLEQTKNALSASLSKLN-----PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSS 396 (751)
Q Consensus 328 vvfviD~SgSM~g------~~i~~aK~al~~~L~~L~-----~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~ 396 (751)
+.|++|+||||.. .-++.||.|+.++++.-. .+||+-+++|..-.....- +-.++-.-.++-|++
T Consensus 4 ~lFllDTS~SM~qrah~~~tylD~AKgaVEtFiK~R~r~~~~~gdryml~TfeepP~~vk~----~~~~~~a~~~~eik~ 79 (888)
T KOG3768|consen 4 FLFLLDTSGSMSQRAHPQFTYLDLAKGAVETFIKQRTRVGRETGDRYMLTTFEEPPKNVKV----ACEKLGAVVIEEIKK 79 (888)
T ss_pred EEEEEecccchhhhccCCchhhHHHHHHHHHHHHHHhccccccCceEEEEecccCchhhhh----HHhhcccHHHHHHHh
Confidence 6799999999975 368999999999997542 4899999999876543321 223344456677889
Q ss_pred CCCC-CCCchHHHHHHHHHHhhcC----------CCC------ccEEEEEecCCC-CChhhHH-------------HHHH
Q 004469 397 LVAG-GGTNILLPLKQAIKLLSDT----------SES------IPLIFLITDGTV-GDERGIC-------------NEIK 445 (751)
Q Consensus 397 l~a~-GgT~l~~aL~~A~~~l~~~----------~~~------~~~IiLlTDG~~-~~~~~i~-------------~~v~ 445 (751)
+++. |.+.+..++..|++++.-. .++ ...||++|||.- +....+. ..+.
T Consensus 80 l~a~~~s~~~~~~~t~AFdlLnlnR~qtGID~yGqGR~pf~lEP~~iI~iTDG~r~s~~~GV~~e~~Lpl~~p~pGse~T 159 (888)
T KOG3768|consen 80 LHAPYGSCQLHHAITEAFDLLNLNRVQTGIDGYGQGRLPFNLEPVTIILITDGGRYSGVAGVPIEFRLPLDPPFPGSEMT 159 (888)
T ss_pred hcCccchhhhhHHHHHHhhhhhhhhhhhcccccccccCccccCceEEEEEecCCccccccCCceeEEeccCCCCCccccc
Confidence 9998 5556677777799988532 111 237899999931 1000000 0111
Q ss_pred HHhhccCCCCCeEEEEEe---c-----------CCCCHHHHHHHHHhCCCEEEEeCCCccHHHHHHHHHHHhccce
Q 004469 446 SYLTNTRSISPRICTFGV---G-----------LYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVF 507 (751)
Q Consensus 446 ~~~~~~~~~~~rIft~Gi---G-----------~~~n~~lL~~LA~~ggG~~~~i~~~~~l~~~l~~~l~~~~~p~ 507 (751)
+. .-...-|+|++-+ | -..|...++.|.+.+||+.+.+.....+.+.++.++.+...-+
T Consensus 160 ke---pFRWDQrlftlVlRiPgt~~~~~~qlt~Vp~Dds~IermCevTGGRSysV~Spr~lnqciesLvqkvQ~gV 232 (888)
T KOG3768|consen 160 KE---PFRWDQRLFTLVLRIPGTPYPTISQLTAVPIDDSVIERMCEVTGGRSYSVVSPRQLNQCIESLVQKVQYGV 232 (888)
T ss_pred cc---cchhhhhhheeeEecCCCCCccHhhhcCCCCCchhhHHhhhhcCCceeeeeCHHHHHHHHHHHHHhhccCe
Confidence 00 0012246776532 1 1245678999999999999999999888888888888765433
No 62
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=98.14 E-value=6e-05 Score=78.70 Aligned_cols=147 Identities=15% Similarity=0.165 Sum_probs=102.0
Q ss_pred ceEEEEEcCCCCCC---------------CChHHHHHHHHHHHHHhcCCCCcEEEEEeCCceEEe---eccc--cc----
Q 004469 326 KDVVFLVDVSGSMQ---------------GVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLF---SSSM--KL---- 381 (751)
Q Consensus 326 ~~vvfviD~SgSM~---------------g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~---~~~~--~~---- 381 (751)
.++++-||.++|=. -...++|.+++..++.....+..|-++.||...... .... .+
T Consensus 32 ~nl~vaIDfT~SNg~p~~~~SLHy~~~~~~N~Yq~aI~~vg~il~~yD~D~~ip~~GFGa~~~~~~~v~~~f~~~~~~p~ 111 (254)
T cd01459 32 SNLIVAIDFTKSNGWPGEKRSLHYISPGRLNPYQKAIRIVGEVLQPYDSDKLIPAFGFGAIVTKDQSVFSFFPGYSESPE 111 (254)
T ss_pred eeEEEEEEeCCCCCCCCCCCCcccCCCCCccHHHHHHHHHHHHHHhcCCCCceeeEeecccCCCCCccccccCCCCCCCc
Confidence 36666677666632 246678888888889999999999999999864211 1000 00
Q ss_pred -cC-HhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCC--CccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCe
Q 004469 382 -AS-QGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDTSE--SIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPR 457 (751)
Q Consensus 382 -~t-~~~i~~a~~~I~~l~a~GgT~l~~aL~~A~~~l~~~~~--~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~r 457 (751)
.. +.-++.-.+.+.++...|.|++...|+.|.+....... ..-.++++|||.+++..++.+.+.++- ...+.
T Consensus 112 ~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~~~~~Y~VLLIiTDG~i~D~~~t~~aIv~AS----~~PlS 187 (254)
T cd01459 112 CQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQSKYHILLIITDGEITDMNETIKAIVEAS----KYPLS 187 (254)
T ss_pred ccCHHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhcCCCceEEEEEECCCCcccHHHHHHHHHHHh----cCCeE
Confidence 01 22233333455577778999999999999887654322 234689999999999888888877663 34577
Q ss_pred EEEEEecCCCCHHHHHHHHH
Q 004469 458 ICTFGVGLYCNHYFLQILAQ 477 (751)
Q Consensus 458 Ift~GiG~~~n~~lL~~LA~ 477 (751)
|..||+|+. +...|+.|-.
T Consensus 188 IiiVGVGd~-~F~~M~~LD~ 206 (254)
T cd01459 188 IVIVGVGDG-PFDAMERLDD 206 (254)
T ss_pred EEEEEeCCC-ChHHHHHhcC
Confidence 888999986 8888888854
No 63
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=98.06 E-value=0.00029 Score=73.48 Aligned_cols=162 Identities=20% Similarity=0.190 Sum_probs=107.2
Q ss_pred CCceEEEEEcCCCC-CCCChHHHHHHHHHHHHHhcC--CCCcEEEEEeCCceEEeecccc-----------------cc-
Q 004469 324 FRKDVVFLVDVSGS-MQGVLLEQTKNALSASLSKLN--PQDSFNIIAFNGETHLFSSSMK-----------------LA- 382 (751)
Q Consensus 324 ~~~~vvfviD~SgS-M~g~~i~~aK~al~~~L~~L~--~~d~f~Ii~F~~~~~~~~~~~~-----------------~~- 382 (751)
.|.-++||||+|.. ....-++.+++++...|+.|+ ++.+++||+|++.++.|.-... +.
T Consensus 2 ~pp~~vFvID~s~~ai~~~~l~~~~~sl~~~l~~lp~~~~~~igiITf~~~V~~~~~~~~~~~~~~~v~~dl~d~f~p~~ 81 (239)
T cd01468 2 QPPVFVFVIDVSYEAIKEGLLQALKESLLASLDLLPGDPRARVGLITYDSTVHFYNLSSDLAQPKMYVVSDLKDVFLPLP 81 (239)
T ss_pred CCCEEEEEEEcchHhccccHHHHHHHHHHHHHHhCCCCCCcEEEEEEeCCeEEEEECCCCCCCCeEEEeCCCccCcCCCc
Confidence 35679999999964 445578999999999999999 8999999999988765421100 00
Q ss_pred ---------CHhHHHHHHHHHhcCC-----CCCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCCCh-----------
Q 004469 383 ---------SQGTIINATQWLSSLV-----AGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDE----------- 437 (751)
Q Consensus 383 ---------t~~~i~~a~~~I~~l~-----a~GgT~l~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~----------- 437 (751)
..+.+.++++.|.... ...+..+..||+.|..++.... ..-.|++++.|.++-.
T Consensus 82 ~~~l~~~~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~-~gGkI~~f~sg~pt~GpG~l~~~~~~~ 160 (239)
T cd01468 82 DRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGTF-AGGRIIVFQGGLPTVGPGKLKSREDKE 160 (239)
T ss_pred CceeeeHHHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHHHHHhhcC-CCceEEEEECCCCCCCCCccccCcccc
Confidence 0134455555555332 2256788999999999997531 2457888888887510
Q ss_pred --------------hhHHHHHHHHhhccCCCCCeEEEEEecC-CCCHHHHHHHHHhCCCEEEEeCCC
Q 004469 438 --------------RGICNEIKSYLTNTRSISPRICTFGVGL-YCNHYFLQILAQIGRGYYDSAYDP 489 (751)
Q Consensus 438 --------------~~i~~~v~~~~~~~~~~~~rIft~GiG~-~~n~~lL~~LA~~ggG~~~~i~~~ 489 (751)
.+..+.+...+. ..++.+..|..+. .++-..|..|++.+||..++..+.
T Consensus 161 ~~~~~~e~~~~~~a~~fY~~la~~~~---~~~isvdlF~~~~~~~dl~~l~~l~~~TGG~v~~y~~f 224 (239)
T cd01468 161 PIRSHDEAQLLKPATKFYKSLAKECV---KSGICVDLFAFSLDYVDVATLKQLAKSTGGQVYLYDSF 224 (239)
T ss_pred cCCCccchhcccccHHHHHHHHHHHH---HcCeEEEEEeccccccCHHHhhhhhhcCCceEEEeCCC
Confidence 011122222221 1234444444443 568888999999999998887765
No 64
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=97.95 E-value=0.00052 Score=71.78 Aligned_cols=158 Identities=18% Similarity=0.159 Sum_probs=101.8
Q ss_pred CCceEEEEEcCCCCC-CCChHHHHHHHHHHHHHhcCCC---CcEEEEEeCCceEEeecc-----------------cccc
Q 004469 324 FRKDVVFLVDVSGSM-QGVLLEQTKNALSASLSKLNPQ---DSFNIIAFNGETHLFSSS-----------------MKLA 382 (751)
Q Consensus 324 ~~~~vvfviD~SgSM-~g~~i~~aK~al~~~L~~L~~~---d~f~Ii~F~~~~~~~~~~-----------------~~~~ 382 (751)
.|--++||||+|-.- +..-++.+++++...|+.++++ .+++||+|++.++.+.-. ..+.
T Consensus 2 ~pp~~~FvIDvs~~a~~~g~~~~~~~si~~~L~~lp~~~~~~~VgiITfd~~v~~y~l~~~~~~~q~~vv~dl~d~f~P~ 81 (244)
T cd01479 2 QPAVYVFLIDVSYNAIKSGLLATACEALLSNLDNLPGDDPRTRVGFITFDSTLHFFNLKSSLEQPQMMVVSDLDDPFLPL 81 (244)
T ss_pred CCCEEEEEEEccHHHHhhChHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCeEEEEECCCCCCCCeEEEeeCcccccCCC
Confidence 356799999997543 3336899999999999999976 899999999987654210 0000
Q ss_pred ----------CHhHHHHHHHHHhcC---CCCCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCCCh--------h---
Q 004469 383 ----------SQGTIINATQWLSSL---VAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDE--------R--- 438 (751)
Q Consensus 383 ----------t~~~i~~a~~~I~~l---~a~GgT~l~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~--------~--- 438 (751)
..+.+.++++.|..+ ....++-+..||+.|..+++.. --.|++++.|.++-. .
T Consensus 82 ~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~c~G~Al~~A~~lL~~~---GGkIi~f~s~~pt~GpG~l~~~~~~~~ 158 (244)
T cd01479 82 PDGLLVNLKESRQVIEDLLDQIPEMFQDTKETESALGPALQAAFLLLKET---GGKIIVFQSSLPTLGAGKLKSREDPKL 158 (244)
T ss_pred CcceeecHHHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHhc---CCEEEEEeCCCCCcCCcccccCccccc
Confidence 113344454444432 2235678899999999999743 246788888876411 0
Q ss_pred --------------hHHHHHHHHhhccCCCCCeEEEEEec-CCCCHHHHHHHHHhCCCEEEEeC
Q 004469 439 --------------GICNEIKSYLTNTRSISPRICTFGVG-LYCNHYFLQILAQIGRGYYDSAY 487 (751)
Q Consensus 439 --------------~i~~~v~~~~~~~~~~~~rIft~GiG-~~~n~~lL~~LA~~ggG~~~~i~ 487 (751)
...+.+...+. ..++.|..|..+ +.++-.-|..|++.+||..++..
T Consensus 159 ~~~~~e~~~~~p~~~fY~~la~~~~---~~~isvDlF~~~~~~~dla~l~~l~~~TGG~v~~y~ 219 (244)
T cd01479 159 LSTDKEKQLLQPQTDFYKKLALECV---KSQISVDLFLFSNQYVDVATLGCLSRLTGGQVYYYP 219 (244)
T ss_pred cCchhhhhhcCcchHHHHHHHHHHH---HcCeEEEEEEccCcccChhhhhhhhhhcCceEEEEC
Confidence 11111222211 223444444433 35788899999999999988877
No 65
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=97.84 E-value=0.00041 Score=72.44 Aligned_cols=163 Identities=20% Similarity=0.203 Sum_probs=100.1
Q ss_pred CCceEEEEEcCCCC-CCCChHHHHHHHHHHHHHhcC--CCCcEEEEEeCCceEEeecc----------------------
Q 004469 324 FRKDVVFLVDVSGS-MQGVLLEQTKNALSASLSKLN--PQDSFNIIAFNGETHLFSSS---------------------- 378 (751)
Q Consensus 324 ~~~~vvfviD~SgS-M~g~~i~~aK~al~~~L~~L~--~~d~f~Ii~F~~~~~~~~~~---------------------- 378 (751)
.|-.++||||+|.. ....-++.+++++..+|+.|+ ++.+|+|++|++.++.|.-.
T Consensus 2 ~pp~y~FvID~s~~av~~g~~~~~~~sl~~~l~~l~~~~~~~vgiitfd~~V~~y~l~~~~~~~~~~v~~dl~~~~~p~~ 81 (243)
T PF04811_consen 2 QPPVYVFVIDVSYEAVQSGLLQSLIESLKSALDSLPGDERTRVGIITFDSSVHFYNLSSSLSQPQMIVVSDLDDPFIPLP 81 (243)
T ss_dssp S--EEEEEEE-SHHHHHHTHHHHHHHHHHHHGCTSSTSTT-EEEEEEESSSEEEEETTTTSSSTEEEEEHHTTSHHSSTS
T ss_pred CCCEEEEEEECchhhhhccHHHHHHHHHHHHHHhccCCCCcEEEEEEeCCEEEEEECCCCcCCCcccchHHHhhcccCCc
Confidence 35679999999843 445678999999999999999 89999999999998765311
Q ss_pred ---cc--ccCHhHHHHHHHHHhcCCC-----CCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCCChh----------
Q 004469 379 ---MK--LASQGTIINATQWLSSLVA-----GGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDER---------- 438 (751)
Q Consensus 379 ---~~--~~t~~~i~~a~~~I~~l~a-----~GgT~l~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~~---------- 438 (751)
+. .-..+.+.++++.|..+.. .....+..||+.|..+++... ..-.|++++-|.++-..
T Consensus 82 ~~llv~~~e~~~~i~~ll~~L~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~-~gGkI~~F~s~~pt~G~Gg~l~~~~~~ 160 (243)
T PF04811_consen 82 DGLLVPLSECRDAIEELLESLPSIFPETAGKRPERCLGSALSAALSLLSSRN-TGGKILVFTSGPPTYGPGGSLKKREDS 160 (243)
T ss_dssp SSSSEETTTCHHHHHHHHHHHHHHSTT-TTB-----HHHHHHHHHHHHHHHT-S-EEEEEEESS---SSSTTSS-SBTTS
T ss_pred ccEEEEhHHhHHHHHHHHHHhhhhcccccccCccccHHHHHHHHHHHHhccc-cCCEEEEEeccCCCCCCCceecccccc
Confidence 11 1123567777777764332 256788999999999997321 23467777777653110
Q ss_pred -----------------hHHHHHHHHhhccCCCCCeEEEEEecC-CCCHHHHHHHHHhCCCEEEEeCCCc
Q 004469 439 -----------------GICNEIKSYLTNTRSISPRICTFGVGL-YCNHYFLQILAQIGRGYYDSAYDPG 490 (751)
Q Consensus 439 -----------------~i~~~v~~~~~~~~~~~~rIft~GiG~-~~n~~lL~~LA~~ggG~~~~i~~~~ 490 (751)
+..+.+...+.+ .++.+..|..+. .++-..|..|++.+||..++..+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~fY~~la~~~~~---~~isvDlf~~~~~~~~l~tl~~l~~~TGG~l~~y~~f~ 227 (243)
T PF04811_consen 161 SHYDTEKEKALLLPPANEFYKKLAEECSK---QGISVDLFVFSSDYVDLATLGPLARYTGGSLYYYPNFN 227 (243)
T ss_dssp CCCCHCTTHHCHSHSSSHHHHHHHHHHHH---CTEEEEEEEECSS--SHHHHTHHHHCTT-EEEEETTTT
T ss_pred cccccccchhhhccccchHHHHHHHHHHh---cCCEEEEEeecCCCCCcHhHHHHHHhCceeEEEeCCCC
Confidence 022333333222 234444444443 5688889999999999998887765
No 66
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=97.83 E-value=0.00022 Score=74.33 Aligned_cols=169 Identities=15% Similarity=0.253 Sum_probs=114.2
Q ss_pred CCceEEEEEcCCCCCCCC-----hHHHHHHHHHHHHHhc---CCCCcEEEEEeCCce-EEeeccccccCHhHHHHHHHHH
Q 004469 324 FRKDVVFLVDVSGSMQGV-----LLEQTKNALSASLSKL---NPQDSFNIIAFNGET-HLFSSSMKLASQGTIINATQWL 394 (751)
Q Consensus 324 ~~~~vvfviD~SgSM~g~-----~i~~aK~al~~~L~~L---~~~d~f~Ii~F~~~~-~~~~~~~~~~t~~~i~~a~~~I 394 (751)
.=+.+++|||.|.+|... ++......+..++... +|-.+++||.--+.. +.+.. ++ .|.+.-+..+
T Consensus 59 iiRhl~iviD~S~am~e~Df~P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~k~g~A~~lt~----lt-gnp~~hI~aL 133 (378)
T KOG2807|consen 59 IIRHLYIVIDCSRAMEEKDFRPSRFANVIKYLEGFVPEFFDQNPISQIGIISIKDGKADRLTD----LT-GNPRIHIHAL 133 (378)
T ss_pred hheeEEEEEEhhhhhhhccCCchHHHHHHHHHHHHHHHHhccCchhheeEEEEecchhhHHHH----hc-CCHHHHHHHH
Confidence 447899999999999853 4555556666666554 345688888887653 33221 11 2333344445
Q ss_pred hcCC-CCCCCchHHHHHHHHHHhhcCCCCc-cEE-EEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHH
Q 004469 395 SSLV-AGGGTNILLPLKQAIKLLSDTSESI-PLI-FLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYF 471 (751)
Q Consensus 395 ~~l~-a~GgT~l~~aL~~A~~~l~~~~~~~-~~I-iLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~l 471 (751)
+.+. ..|...|..||+.|.+.++..++.. |.| |+++.=...|+..+.+.+.+... .++|+..+|+.. ...+
T Consensus 134 ~~~~~~~g~fSLqNaLe~a~~~Lk~~p~H~sREVLii~sslsT~DPgdi~~tI~~lk~----~kIRvsvIgLsa--Ev~i 207 (378)
T KOG2807|consen 134 KGLTECSGDFSLQNALELAREVLKHMPGHVSREVLIIFSSLSTCDPGDIYETIDKLKA----YKIRVSVIGLSA--EVFI 207 (378)
T ss_pred hcccccCCChHHHHHHHHHHHHhcCCCcccceEEEEEEeeecccCcccHHHHHHHHHh----hCeEEEEEeech--hHHH
Confidence 5444 6688999999999999998765544 444 44443333466677766665543 358999998876 4678
Q ss_pred HHHHHHhCCCEEEEeCCCccHHHHHHHHHHHhccce
Q 004469 472 LQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVF 507 (751)
Q Consensus 472 L~~LA~~ggG~~~~i~~~~~l~~~l~~~l~~~~~p~ 507 (751)
.+.|+++++|.|..+-|..-+ ..++.+...|.
T Consensus 208 cK~l~kaT~G~Y~V~lDe~Hl----keLl~e~~~Pp 239 (378)
T KOG2807|consen 208 CKELCKATGGRYSVALDEGHL----KELLLEHTHPP 239 (378)
T ss_pred HHHHHHhhCCeEEEEeCHHHH----HHHHHhcCCCC
Confidence 999999999999988876555 45666666664
No 67
>PRK05325 hypothetical protein; Provisional
Probab=97.68 E-value=0.00069 Score=74.63 Aligned_cols=163 Identities=15% Similarity=0.146 Sum_probs=102.2
Q ss_pred CCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCC-CCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCCCCC
Q 004469 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP-QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGG 402 (751)
Q Consensus 324 ~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~-~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a~Gg 402 (751)
...=+++++|+||||....-+.||..-..+-.-|.- =.++.|+...++...+ .++.+ +|. .....||
T Consensus 221 s~AVmfclMDvSGSM~~~~K~lakrff~lly~fL~r~Y~~vEvvFI~H~t~Ak-----EVdEe------eFF-~~~esGG 288 (401)
T PRK05325 221 SQAVMFCLMDVSGSMDEAEKDLAKRFFFLLYLFLRRKYENVEVVFIRHHTEAK-----EVDEE------EFF-YSRESGG 288 (401)
T ss_pred CcEEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCcee-----EcCHH------Hcc-ccCCCCC
Confidence 345567899999999998888898876555444432 1345555444443322 12321 122 2355699
Q ss_pred CchHHHHHHHHHHhhcC---CCCccEEEEEecCCCC--ChhhHHHHHHHHhhccCCCCCeEEEEE-ecCCC--CHHHHHH
Q 004469 403 TNILLPLKQAIKLLSDT---SESIPLIFLITDGTVG--DERGICNEIKSYLTNTRSISPRICTFG-VGLYC--NHYFLQI 474 (751)
Q Consensus 403 T~l~~aL~~A~~~l~~~---~~~~~~IiLlTDG~~~--~~~~i~~~v~~~~~~~~~~~~rIft~G-iG~~~--n~~lL~~ 474 (751)
|-+..|++.+.+.+... ....-.++-.|||..+ |.......+++.+-. ..+.|+++ |+... +..+.+.
T Consensus 289 T~vSSA~~l~~eIi~~rYpp~~wNIY~f~aSDGDNw~~D~~~~~~ll~~~llp----~~~~f~Y~Ev~~~~~~~~~l~~~ 364 (401)
T PRK05325 289 TIVSSAYKLALEIIEERYPPAEWNIYAFQASDGDNWSSDNPRCVELLREELLP----VCNYFAYIEVTPRAYRHQTLWRE 364 (401)
T ss_pred eEehHHHHHHHHHHHhhCCHhHCeeEEEEcccCCCcCCCCHHHHHHHHHHHHH----HhhheEEEEecCCCCCchHHHHH
Confidence 99999999999998752 2334578999999975 344455555534321 13466653 44433 4566666
Q ss_pred HHHhCCC----EEEEeCCCccHHHHHHHHHHH
Q 004469 475 LAQIGRG----YYDSAYDPGSVDYRIRRFFTA 502 (751)
Q Consensus 475 LA~~ggG----~~~~i~~~~~l~~~l~~~l~~ 502 (751)
......- ....|.+.+++-..+..+|.+
T Consensus 365 y~~i~~~~~~f~~~~I~~~~dIyp~~r~lf~k 396 (401)
T PRK05325 365 YERLQDTFPNFAMQRIRDKEDIYPVFRELFKK 396 (401)
T ss_pred HHHhhccCCCeEEEEeCCHHHHHHHHHHHhcc
Confidence 6655543 456678888888888887754
No 68
>PLN00162 transport protein sec23; Provisional
Probab=97.63 E-value=0.037 Score=67.12 Aligned_cols=177 Identities=18% Similarity=0.121 Sum_probs=111.7
Q ss_pred CCCCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCceEEeecc------------ccccCH-----
Q 004469 322 KVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSS------------MKLASQ----- 384 (751)
Q Consensus 322 ~~~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~------------~~~~t~----- 384 (751)
.+.|--++||||+| +....++..|+++...|+.|+++.+++||+||+.++.+.-. ...++.
T Consensus 121 ~~~pp~fvFvID~s--~~~~~l~~lk~sl~~~L~~LP~~a~VGlITF~s~V~~~~L~~~~~~~~~Vf~g~k~~t~~~l~~ 198 (761)
T PLN00162 121 APSPPVFVFVVDTC--MIEEELGALKSALLQAIALLPENALVGLITFGTHVHVHELGFSECSKSYVFRGNKEVSKDQILE 198 (761)
T ss_pred CCCCcEEEEEEecc--hhHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEEcCCCCCcceEEecCCccCCHHHHHH
Confidence 34567899999998 45567899999999999999999999999999998654310 001111
Q ss_pred ---------------------------------------hHHHHHHHHHhcCC---CC---CCCchHHHHHHHHHHhhcC
Q 004469 385 ---------------------------------------GTIINATQWLSSLV---AG---GGTNILLPLKQAIKLLSDT 419 (751)
Q Consensus 385 ---------------------------------------~~i~~a~~~I~~l~---a~---GgT~l~~aL~~A~~~l~~~ 419 (751)
..++.+++.|.... +. .....+.||+.|..++...
T Consensus 199 ~l~l~~~~~~~~~~~~~~~~~~~~~p~~~~fLvpl~e~~~~i~~lLe~L~~~~~~~~~~~rp~r~tG~AL~vA~~lL~~~ 278 (761)
T PLN00162 199 QLGLGGKKRRPAGGGIAGARDGLSSSGVNRFLLPASECEFTLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGLLGAC 278 (761)
T ss_pred HhccccccccccccccccccccccCCCccceeEEHHHHHHHHHHHHHhhhccccccCCCCCCCccHHHHHHHHHHHHhhc
Confidence 33444555555332 11 3567899999999988632
Q ss_pred -CCCccEEEEEecCCCCCh---------h-------h--------------HHHHHHHHhhccCCCCCeEEEEEecCCCC
Q 004469 420 -SESIPLIFLITDGTVGDE---------R-------G--------------ICNEIKSYLTNTRSISPRICTFGVGLYCN 468 (751)
Q Consensus 420 -~~~~~~IiLlTDG~~~~~---------~-------~--------------i~~~v~~~~~~~~~~~~rIft~GiG~~~n 468 (751)
.+..-.|++++-|-++.. . . ..+.+...+. ...+.+.||+++. +.++
T Consensus 279 ~~~~gGrI~~F~sgppT~GpG~v~~r~~~~~~rsh~di~k~~~~~~~~a~~fY~~la~~~~-~~gisvDlF~~s~-dqvg 356 (761)
T PLN00162 279 VPGTGARIMAFVGGPCTEGPGAIVSKDLSEPIRSHKDLDKDAAPYYKKAVKFYEGLAKQLV-AQGHVLDVFACSL-DQVG 356 (761)
T ss_pred cCCCceEEEEEeCCCCCCCCceeecccccccccCccccccchhhhcchHHHHHHHHHHHHH-HcCceEEEEEccc-cccC
Confidence 122346777777865310 0 0 0111111111 1234455665543 4578
Q ss_pred HHHHHHHHHhCCCEEEEeCCCc--cHHHHHHHHHHH
Q 004469 469 HYFLQILAQIGRGYYDSAYDPG--SVDYRIRRFFTA 502 (751)
Q Consensus 469 ~~lL~~LA~~ggG~~~~i~~~~--~l~~~l~~~l~~ 502 (751)
-.-|+.+++.+||..+...+.+ .+...+.+++.+
T Consensus 357 laem~~l~~~TGG~v~~~~sF~~~~f~~~l~r~~~r 392 (761)
T PLN00162 357 VAEMKVAVERTGGLVVLAESFGHSVFKDSLRRVFER 392 (761)
T ss_pred HHHHhhhHhhcCcEEEEeCCcChHHHHHHHHHHhcc
Confidence 8999999999999988776554 344555555553
No 69
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=97.53 E-value=0.00048 Score=74.85 Aligned_cols=146 Identities=18% Similarity=0.243 Sum_probs=90.4
Q ss_pred eEEEEEcCCCCCCCChHHHHHHHHHHHHHhcC-CCCcEEEEEeCCceE-------EeeccccccCHhHHHHHHHHHh---
Q 004469 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLN-PQDSFNIIAFNGETH-------LFSSSMKLASQGTIINATQWLS--- 395 (751)
Q Consensus 327 ~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~-~~d~f~Ii~F~~~~~-------~~~~~~~~~t~~~i~~a~~~I~--- 395 (751)
-|.+|||.||||+|.+|..|......+.+.|. .+..+-|..|-+... .|...-.+..+.-+......|.
T Consensus 415 vVtlviDnSGSMrGRpItvAatcAdilArtLeRcgVk~eIlGFTT~awkGg~sre~wlk~Gkp~~pgrlndlrhiiyksA 494 (620)
T COG4547 415 VVTLVIDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTKAWKGGQSRETWLKRGKPAFPGRLNDLRHIIYKSA 494 (620)
T ss_pred hheeeeccCCCcCCcceehhHHHHHHHHHHHHHcCCceEEeeeeeccccCCccHHHHHhcCCCCCchhhhhHHHHHHhcc
Confidence 46699999999999999988887777777775 477888888866431 1222122333333332222221
Q ss_pred ------------cCCCCC--CCch-HHHHHHHHHHhhcCCCCccEEEEEecCCCCCh-----------hhHHHHHHHHhh
Q 004469 396 ------------SLVAGG--GTNI-LLPLKQAIKLLSDTSESIPLIFLITDGTVGDE-----------RGICNEIKSYLT 449 (751)
Q Consensus 396 ------------~l~a~G--gT~l-~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~-----------~~i~~~v~~~~~ 449 (751)
-|-..| --|| ..+|-+|-+.+-..+...+++.++|||.+-+. ..-+..+.+.+.
T Consensus 495 daPwrRARrnlGlmmreglLkeNiDGEal~wah~rl~gRpEqrkIlmmiSDGAPvddstlsvnpGnylerHLRaVieeIE 574 (620)
T COG4547 495 DAPWRRARRNLGLMMREGLLKENIDGEALMWAHQRLIGRPEQRKILMMISDGAPVDDSTLSVNPGNYLERHLRAVIEEIE 574 (620)
T ss_pred CCHHHHHHhhcchhhhcchhhccCChHHHHHHHHHHhcChhhceEEEEecCCCcccccccccCCchHHHHHHHHHHHHHh
Confidence 111111 1233 46777777777666667788999999997422 122334444444
Q ss_pred ccCCCCCeEEEEEecCCCCHHHHHH
Q 004469 450 NTRSISPRICTFGVGLYCNHYFLQI 474 (751)
Q Consensus 450 ~~~~~~~rIft~GiG~~~n~~lL~~ 474 (751)
.. ..+-+.+||||.++-+++-+.
T Consensus 575 tr--SpveLlAIGighDvtRyYrra 597 (620)
T COG4547 575 TR--SPVELLAIGIGHDVTRYYRRA 597 (620)
T ss_pred cC--Cchhheeeecccccchhhhhh
Confidence 32 346799999999988877653
No 70
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=97.49 E-value=0.0063 Score=61.18 Aligned_cols=175 Identities=18% Similarity=0.182 Sum_probs=108.8
Q ss_pred CceEEEEEcCCCCCCCChHHHHHHHHHHHH------HhcC----CCCcEEEEEeCCc--eEEeeccccccCHhHHHHHHH
Q 004469 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASL------SKLN----PQDSFNIIAFNGE--THLFSSSMKLASQGTIINATQ 392 (751)
Q Consensus 325 ~~~vvfviD~SgSM~g~~i~~aK~al~~~L------~~L~----~~d~f~Ii~F~~~--~~~~~~~~~~~t~~~i~~a~~ 392 (751)
..++++.+|.|+||.......-++.+...| +.+. -...++++.|++. .....+-..-.+.++.+.+..
T Consensus 3 dlaLvLavDvS~SVD~~E~~lQ~~G~A~Al~dp~V~~Ai~~g~~g~Iav~~~eWsg~~~q~~~v~Wt~i~~~~da~a~A~ 82 (205)
T PF06707_consen 3 DLALVLAVDVSGSVDADEYRLQREGYAAALRDPEVIAAILSGPIGRIAVAVVEWSGPGRQRVVVPWTRIDSPADAEAFAA 82 (205)
T ss_pred cceeeeeeeccCCCCHHHHHHHHHHHHHHHCCHHHHHHHhcCCCCeEEEEEEEecCCCCceEEeCCEEeCCHHHHHHHHH
Confidence 467899999999999876655555554443 2222 2456778888873 334444445567888888888
Q ss_pred HHhcCC--CCCCCchHHHHHHHHHHhhcCCC-Ccc-EEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCC
Q 004469 393 WLSSLV--AGGGTNILLPLKQAIKLLSDTSE-SIP-LIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCN 468 (751)
Q Consensus 393 ~I~~l~--a~GgT~l~~aL~~A~~~l~~~~~-~~~-~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n 468 (751)
.|.... ..++|.|..||..+..++.+.+. ..| .|=+-.||..+......+..+..+.. .++.|..+.|+....
T Consensus 83 ~l~~~~r~~~~~Taig~Al~~a~~ll~~~~~~~~RrVIDvSGDG~~N~G~~p~~~ard~~~~---~GitINgL~I~~~~~ 159 (205)
T PF06707_consen 83 RLRAAPRRFGGRTAIGSALDFAAALLAQNPFECWRRVIDVSGDGPNNQGPRPVTSARDAAVA---AGITINGLAILDDDP 159 (205)
T ss_pred HHHhCCCCCCCCchHHHHHHHHHHHHHhCCCCCceEEEEECCCCCCCCCCCccHHHHHHHHH---CCeEEeeeEecCCCC
Confidence 888553 34779999999999999976533 334 55567799876553333445555443 357888888876432
Q ss_pred -------HHHHHHHHHhCCC-EEEEeCCCccHHHHHHH-HHHHh
Q 004469 469 -------HYFLQILAQIGRG-YYDSAYDPGSVDYRIRR-FFTAA 503 (751)
Q Consensus 469 -------~~lL~~LA~~ggG-~~~~i~~~~~l~~~l~~-~l~~~ 503 (751)
.++-+.+ --|.| ....+.+.++..+.|.+ ++.++
T Consensus 160 ~~~~~L~~yy~~~V-IgGpgAFV~~a~~~~df~~AirrKL~rEi 202 (205)
T PF06707_consen 160 FGGADLDAYYRRCV-IGGPGAFVETARGFEDFAEAIRRKLIREI 202 (205)
T ss_pred CccccHHHHHhhhc-ccCCCceEEEcCCHHHHHHHHHHHHHHHh
Confidence 3333333 22344 34445556666666543 44444
No 71
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins.
Probab=97.45 E-value=0.00047 Score=78.63 Aligned_cols=104 Identities=19% Similarity=0.264 Sum_probs=80.0
Q ss_pred ceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCCCCc-EEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCCCCCCc
Q 004469 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDS-FNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTN 404 (751)
Q Consensus 326 ~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~~d~-f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a~GgT~ 404 (751)
.+.+.|.|+||||.|.+++.+ -+|..++..+..+.. =.+|+|+++.+.. ..+..++.+-++++..+..++.||
T Consensus 341 ~n~iav~DvSGSM~~~pm~va-iaLgll~ae~~~~pf~~~~ITFs~~P~~~-----~i~g~~l~ekv~~~~~~~wg~nTn 414 (534)
T PF11443_consen 341 ENCIAVCDVSGSMSGPPMDVA-IALGLLIAELNKGPFKGRFITFSENPQLH-----KIKGDTLREKVRFIRRMDWGMNTN 414 (534)
T ss_pred cceEEEEecCCccCccHHHHH-HHHHHHHHHhcccccCCeEEeecCCceEE-----EecCCCHHHHHHHHHhCCcccCCc
Confidence 689999999999999988766 456677777764322 2389999997754 235558888899999999999999
Q ss_pred hHHHHHHHHHHhhcC----CCCccEEEEEecCCCC
Q 004469 405 ILLPLKQAIKLLSDT----SESIPLIFLITDGTVG 435 (751)
Q Consensus 405 l~~aL~~A~~~l~~~----~~~~~~IiLlTDG~~~ 435 (751)
+...++..++..... ..-++.||++||=+.+
T Consensus 415 ~~aVFdlIL~~Av~~~l~~e~M~k~lfV~SDMeFD 449 (534)
T PF11443_consen 415 FQAVFDLILETAVKNKLKQEDMPKRLFVFSDMEFD 449 (534)
T ss_pred HHHHHHHHHHHHHHcCCChHHCCceEEEEeccccc
Confidence 999998888765432 2235689999988764
No 72
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=97.44 E-value=0.0067 Score=64.23 Aligned_cols=163 Identities=17% Similarity=0.094 Sum_probs=102.4
Q ss_pred CceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCceEEeecccc------------ccC---------
Q 004469 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMK------------LAS--------- 383 (751)
Q Consensus 325 ~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~------------~~t--------- 383 (751)
|--++||||+|- ....++.+|+++...|+.|+++.+++||+|++.++.+.-... .++
T Consensus 3 pp~~vFviDvs~--~~~el~~l~~sl~~~L~~lP~~a~VGlITfd~~V~~~~L~~~~~~~~~vf~g~~~~~~~~~~~~l~ 80 (267)
T cd01478 3 PPVFLFVVDTCM--DEEELDALKESLIMSLSLLPPNALVGLITFGTMVQVHELGFEECSKSYVFRGNKDYTAKQIQDMLG 80 (267)
T ss_pred CCEEEEEEECcc--CHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEEcCCCcCceeeeccCCccCCHHHHHHHhc
Confidence 456999999976 456789999999999999999999999999999865431100 000
Q ss_pred -----------------------------------HhHHHHHHHHHhcCC------CCCCCchHHHHHHHHHHhhcC-CC
Q 004469 384 -----------------------------------QGTIINATQWLSSLV------AGGGTNILLPLKQAIKLLSDT-SE 421 (751)
Q Consensus 384 -----------------------------------~~~i~~a~~~I~~l~------a~GgT~l~~aL~~A~~~l~~~-~~ 421 (751)
...++.+++.|.... ......+..||+.|..++... +.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~p~~~~~flvpl~e~~~~i~~lLe~L~~~~~~~~~~~r~~r~~G~Al~~A~~ll~~~~~~ 160 (267)
T cd01478 81 LGGPAMRPSASQHPGAGNPLPSAAASRFLLPVSQCEFTLTDLLEQLQPDPWPVPAGHRPLRCTGVALSIAVGLLEACFPN 160 (267)
T ss_pred cccccccccccCcCCccccccccccccEEEEHHHHHHHHHHHHHhCcccccccCCCCCCCCchHHHHHHHHHHHHhhcCC
Confidence 123333444443221 124567899999999988632 12
Q ss_pred CccEEEEEecCCCCCh---------h-------hH-----------HHHHHHHhh--ccCCCCCeEEEEEecCCCCHHHH
Q 004469 422 SIPLIFLITDGTVGDE---------R-------GI-----------CNEIKSYLT--NTRSISPRICTFGVGLYCNHYFL 472 (751)
Q Consensus 422 ~~~~IiLlTDG~~~~~---------~-------~i-----------~~~v~~~~~--~~~~~~~rIft~GiG~~~n~~lL 472 (751)
.--.|++++-|-++.. . .+ .+.-++... ......+.+|..+. +.++-.-|
T Consensus 161 ~gGki~~F~sg~pT~GpG~l~~r~~~~~~r~~~d~~~~~~~~~~~a~~fY~~la~~~~~~~vsvDlF~~s~-d~vglaem 239 (267)
T cd01478 161 TGARIMLFAGGPCTVGPGAVVSTELKDPIRSHHDIDKDNAKYYKKAVKFYDSLAKRLAANGHAVDIFAGCL-DQVGLLEM 239 (267)
T ss_pred CCcEEEEEECCCCCCCCceeeccccccccccccccccchhhhhhhHHHHHHHHHHHHHhCCeEEEEEeccc-cccCHHHH
Confidence 2346777777765310 0 00 011111111 11234455665553 45788999
Q ss_pred HHHHHhCCCEEEEeCCCc
Q 004469 473 QILAQIGRGYYDSAYDPG 490 (751)
Q Consensus 473 ~~LA~~ggG~~~~i~~~~ 490 (751)
..|++.+||..++..+..
T Consensus 240 ~~l~~~TGG~v~~~~~f~ 257 (267)
T cd01478 240 KVLVNSTGGHVVLSDSFT 257 (267)
T ss_pred HHHHHhcCcEEEEeCCcc
Confidence 999999999988876654
No 73
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=97.39 E-value=0.0025 Score=70.77 Aligned_cols=161 Identities=17% Similarity=0.155 Sum_probs=98.2
Q ss_pred CCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcC---CCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCCC
Q 004469 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG 400 (751)
Q Consensus 324 ~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a~ 400 (751)
...=+++++|+||||...+-+.||.....+..-|. ++..+-.|...++++. ++.+ +|. ....+
T Consensus 245 s~AVv~~lmDvSGSM~~~~K~lak~ff~~l~~fL~~~Y~~Ve~vfI~H~t~A~E-------VdEe------~FF-~~~es 310 (421)
T PF04285_consen 245 SNAVVFCLMDVSGSMGEFKKDLAKRFFFWLYLFLRRKYENVEIVFIRHHTEAKE-------VDEE------EFF-HSRES 310 (421)
T ss_pred CcEEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCceEE-------ecHH------Hhc-ccCCC
Confidence 34556789999999998888889987666655554 3333444444444432 2221 122 34556
Q ss_pred CCCchHHHHHHHHHHhhcC---CCCccEEEEEecCCCC--ChhhHHHHHHHHhhccCCCCCeEEEEE-ecCCCCH---HH
Q 004469 401 GGTNILLPLKQAIKLLSDT---SESIPLIFLITDGTVG--DERGICNEIKSYLTNTRSISPRICTFG-VGLYCNH---YF 471 (751)
Q Consensus 401 GgT~l~~aL~~A~~~l~~~---~~~~~~IiLlTDG~~~--~~~~i~~~v~~~~~~~~~~~~rIft~G-iG~~~n~---~l 471 (751)
|||-+..|++.+.+++... ....-.++-+|||..+ |.......+.+.+-. .+..|+++ |+....+ ..
T Consensus 311 GGT~vSSA~~l~~~ii~erypp~~wNiY~~~~SDGDN~~~D~~~~~~ll~~~llp----~~~~f~Y~Ei~~~~~~~~~~~ 386 (421)
T PF04285_consen 311 GGTRVSSAYELALEIIEERYPPSDWNIYVFHASDGDNWSSDNERCVELLEEELLP----VCNYFGYGEITQPGRHSSWRE 386 (421)
T ss_pred CCeEehHHHHHHHHHHHhhCChhhceeeeEEcccCccccCCCHHHHHHHHHHHHH----hcCeEEEEEeccCccchHHHH
Confidence 9999999999999998752 2344578999999975 334455555533321 13456553 3422222 23
Q ss_pred HHHHHHhCCC-EEEEeCCCccHHHHHHHHHHH
Q 004469 472 LQILAQIGRG-YYDSAYDPGSVDYRIRRFFTA 502 (751)
Q Consensus 472 L~~LA~~ggG-~~~~i~~~~~l~~~l~~~l~~ 502 (751)
++.+.....- ....|.+.+++-..+..+|.+
T Consensus 387 ~~~~~~~~~~f~~~~i~~~~di~~~~r~~f~~ 418 (421)
T PF04285_consen 387 YEELKESHDNFAMVRIREKEDIYPVFRELFKK 418 (421)
T ss_pred HHHHhhcCCCeEEEEeCCHHHHHHHHHHHhcc
Confidence 5555433322 345577788888888888754
No 74
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=97.36 E-value=0.0032 Score=68.28 Aligned_cols=158 Identities=14% Similarity=0.124 Sum_probs=92.1
Q ss_pred CCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCC-CCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCCCCC
Q 004469 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP-QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGG 402 (751)
Q Consensus 324 ~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~-~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a~Gg 402 (751)
...=+++++|+||||....-+.||..-..+-.-|.- =.++.|+.-.++...+ .++.++ |. .....||
T Consensus 201 s~AV~fc~MDvSGSM~~~~K~lak~ff~~ly~FL~~~Y~~VeivFI~H~t~Ak-----EVdEee------FF-~~~EsGG 268 (371)
T TIGR02877 201 SNAVVIAMMDTSGSMGQFKKYIARSFFFWMVKFLRTKYENVEICFISHHTEAK-----EVTEEE------FF-HKGESGG 268 (371)
T ss_pred CcEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCeeE-----EcCHHH------hc-ccCCCCC
Confidence 445567899999999988888898876555444442 1345555555444322 123221 22 3355699
Q ss_pred CchHHHHHHHHHHhhcC---CCCccEEEEEecCCCC--ChhhHHHHHHHHhhccCCCCCeEEEEE-ecC-CCCHHHHHH-
Q 004469 403 TNILLPLKQAIKLLSDT---SESIPLIFLITDGTVG--DERGICNEIKSYLTNTRSISPRICTFG-VGL-YCNHYFLQI- 474 (751)
Q Consensus 403 T~l~~aL~~A~~~l~~~---~~~~~~IiLlTDG~~~--~~~~i~~~v~~~~~~~~~~~~rIft~G-iG~-~~n~~lL~~- 474 (751)
|-+..|++.+.+.+... ....-..+-+|||..+ |.......+++.+. ..+.|++| |+. .....|...
T Consensus 269 T~vSSA~~l~~eII~~rYpp~~wNIY~f~aSDGDNw~~D~~~c~~ll~~llp-----~~~~f~Y~Ei~~~~~~~~l~~~y 343 (371)
T TIGR02877 269 TYCSSGYKKALEIIDERYNPARYNIYAFHFSDGDNLTSDNERAVKLVRKLLE-----VCNLFGYGEIMPYGYSNTLKNKF 343 (371)
T ss_pred eEehHHHHHHHHHHHhhCChhhCeeEEEEcccCCCccCCcHHHHHHHHHHHH-----hhheEEEEEecCCCCcchHHHHH
Confidence 99999999999998752 2333477899999975 34445556665432 13455553 343 222334322
Q ss_pred ---HHHhCCCEEEEeCCCccHHHHHHHH
Q 004469 475 ---LAQIGRGYYDSAYDPGSVDYRIRRF 499 (751)
Q Consensus 475 ---LA~~ggG~~~~i~~~~~l~~~l~~~ 499 (751)
|+. .+=....|.+.+++-..+.++
T Consensus 344 ~~~i~~-~~f~~~~I~~~~dIyp~~r~l 370 (371)
T TIGR02877 344 KNEIKD-PNFVPLIIRDKEDLYPALKKF 370 (371)
T ss_pred HhhhcC-CCeEEEEeCCHHHHHHHHHHh
Confidence 332 223344556666665555544
No 75
>PTZ00395 Sec24-related protein; Provisional
Probab=97.35 E-value=0.047 Score=67.32 Aligned_cols=225 Identities=17% Similarity=0.126 Sum_probs=130.0
Q ss_pred CCCCceEEEEEcCCC-CCCCChHHHHHHHHHHHHHhcC-CCCcEEEEEeCCceEEee--cc-------------------
Q 004469 322 KVFRKDVVFLVDVSG-SMQGVLLEQTKNALSASLSKLN-PQDSFNIIAFNGETHLFS--SS------------------- 378 (751)
Q Consensus 322 ~~~~~~vvfviD~Sg-SM~g~~i~~aK~al~~~L~~L~-~~d~f~Ii~F~~~~~~~~--~~------------------- 378 (751)
.+.|-.++||||+|- |+...-+..+-++++..|+.|+ +..+++||+|++..+.|. +.
T Consensus 949 ~p~PP~YvFLIDVS~~AVkSGLl~tacesIK~sLDsL~dpRTRVGIITFDSsLHFYNLks~l~~~~~~~~~~~~l~qPQM 1028 (1560)
T PTZ00395 949 NMLPPYFVFVVECSYNAIYNNITYTILEGIRYAVQNVKCPQTKIAIITFNSSIYFYHCKGGKGVSGEEGDGGGGSGNHQV 1028 (1560)
T ss_pred CCCCCEEEEEEECCHHHHhhChHHHHHHHHHHHHhcCCCCCcEEEEEEecCcEEEEecCcccccccccccccccCCCceE
Confidence 456779999999994 4555567778888888888886 578999999999875432 11
Q ss_pred ---------cccc-----------CHhHHHHHHHHHhcCCC---CCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCC
Q 004469 379 ---------MKLA-----------SQGTIINATQWLSSLVA---GGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVG 435 (751)
Q Consensus 379 ---------~~~~-----------t~~~i~~a~~~I~~l~a---~GgT~l~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~ 435 (751)
..+. +.+.++.+++.|..+.. ..+.-+..||+.|+.+++...+.-+.+++.+ ..++
T Consensus 1029 LVVSDLDDPFLPlP~ddLLVnL~ESRevIe~LLDkLPemFt~t~~~esCLGSALqAA~~aLk~~GGGGKIiVF~S-SLPn 1107 (1560)
T PTZ00395 1029 IVMSDVDDPFLPLPLEDLFFGCVEEIDKINTLIDTIKSVSTTMQSYGSCGNSALKIAMDMLKERNGLGSICMFYT-TTPN 1107 (1560)
T ss_pred EeecCCccCcCCCCccCeeechHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHhcCCCceEEEEEc-CCCC
Confidence 0011 12445555555554432 3567889999999999976432234444444 4432
Q ss_pred C--------------------hhhHHHHHHHHhhccCCCCCeEEEEEecCCC--CHHHHHHHHHhCCCEEEEeCCCc---
Q 004469 436 D--------------------ERGICNEIKSYLTNTRSISPRICTFGVGLYC--NHYFLQILAQIGRGYYDSAYDPG--- 490 (751)
Q Consensus 436 ~--------------------~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~--n~~lL~~LA~~ggG~~~~i~~~~--- 490 (751)
- .......+...+. ...+.+.+|.++- .++ +-.-|..|++.+||..++.....
T Consensus 1108 iGpGaLK~Re~~~KEk~Ll~pqd~FYK~LA~ECs-k~qISVDLFLfSs-qYvDVDVATLg~Lsr~TGGqlyyYPnFna~r 1185 (1560)
T PTZ00395 1108 CGIGAIKELKKDLQENFLEVKQKIFYDSLLLDLY-AFNISVDIFIISS-NNVRVCVPSLQYVAQNTGGKILFVENFLWQK 1185 (1560)
T ss_pred CCCCcccccccccccccccccchHHHHHHHHHHH-hcCCceEEEEccC-cccccccccccchhcccceeEEEeCCCcccc
Confidence 1 0011122222221 1235556666542 223 34668999999999877765532
Q ss_pred cHHHHHHHHHHHhcc-ceEe--eEEEEeecCCCceeec-------------CCCCCcccCCCcEEEEEEEcCCCC
Q 004469 491 SVDYRIRRFFTAASS-VFLT--NMTLETSKHLNSLELF-------------PSHIPDFCLECPLIVSGRYSGNFG 549 (751)
Q Consensus 491 ~l~~~l~~~l~~~~~-p~l~--di~l~~~~~~~~~ev~-------------p~~ip~l~~g~~l~v~G~~~g~~~ 549 (751)
+-.....++.+.+.. +..- -++|....++.....+ --.+|.+-.++.+.|.-++.++..
T Consensus 1186 D~~KL~~DL~r~LTre~iGyEAVMRVRCS~GLrVs~fyG~GnnF~s~rStDLLaLP~Id~DqSfaVeLk~DEkL~ 1260 (1560)
T PTZ00395 1186 DYKEIYMNIMDTLTSEDIAYCCELKLRYSHHMSVKKLFCCNNNFNSIISVDTIKIPKIRHDQTFAFLLNYSDISE 1260 (1560)
T ss_pred cHHHHHHHHHHHhhccceeeEEEEEEECCCCeEEEEEeccCCccccccccccccccccCCCceEEEEEEeccccC
Confidence 222333445555543 3322 2334333333322222 124677788888888877776543
No 76
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.011 Score=69.00 Aligned_cols=178 Identities=19% Similarity=0.187 Sum_probs=113.5
Q ss_pred EEEEEeCCCCCCCCCCCceEEEEEcCCC-CCCCChHHHHHHHHHHHHHhcC--CCCcEEEEEeCCceEEeecc-------
Q 004469 309 FCLYLFPGKSQSRKVFRKDVVFLVDVSG-SMQGVLLEQTKNALSASLSKLN--PQDSFNIIAFNGETHLFSSS------- 378 (751)
Q Consensus 309 f~l~l~P~~~~~~~~~~~~vvfviD~Sg-SM~g~~i~~aK~al~~~L~~L~--~~d~f~Ii~F~~~~~~~~~~------- 378 (751)
+.=++.|.+-..+++.|.-++||+|+|- ||...-++.+++++..-|+.|+ ++.++++|+|++..+.+.-.
T Consensus 278 ~vE~iAP~eYmlR~P~Pavy~FliDVS~~a~ksG~L~~~~~slL~~LD~lpgd~Rt~igfi~fDs~ihfy~~~~~~~qp~ 357 (887)
T KOG1985|consen 278 VVEFIAPSEYMLRPPQPAVYVFLIDVSISAIKSGYLETVARSLLENLDALPGDPRTRIGFITFDSTIHFYSVQGDLNQPQ 357 (887)
T ss_pred eEEEecCcccccCCCCCceEEEEEEeehHhhhhhHHHHHHHHHHHhhhcCCCCCcceEEEEEeeceeeEEecCCCcCCCc
Confidence 4446678877777788999999999995 4555578999999999999998 78899999999997654310
Q ss_pred ------------------cc--ccCHhHHHHHHHHHhcCCC---CCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCC
Q 004469 379 ------------------MK--LASQGTIINATQWLSSLVA---GGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVG 435 (751)
Q Consensus 379 ------------------~~--~~t~~~i~~a~~~I~~l~a---~GgT~l~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~ 435 (751)
++ ....+.++.+++.+..+-. +-+..++.||+.|++++....+ + |+++.-+.++
T Consensus 358 mm~vsdl~d~flp~pd~lLv~L~~ck~~i~~lL~~lp~~F~~~~~t~~alGpALkaaf~li~~~GG--r-i~vf~s~lPn 434 (887)
T KOG1985|consen 358 MMIVSDLDDPFLPMPDSLLVPLKECKDLIETLLKTLPEMFQDTRSTGSALGPALKAAFNLIGSTGG--R-ISVFQSTLPN 434 (887)
T ss_pred eeeeccccccccCCchhheeeHHHHHHHHHHHHHHHHHHHhhccCcccccCHHHHHHHHHHhhcCC--e-EEEEeccCCC
Confidence 00 0122456666666664433 2577899999999999976433 3 4444444432
Q ss_pred C---------------hhhHH-------HHHHHHhhccCCCCCeEEEEEec-CCCCHHHHHHHHHhCCCEEEEeCCC
Q 004469 436 D---------------ERGIC-------NEIKSYLTNTRSISPRICTFGVG-LYCNHYFLQILAQIGRGYYDSAYDP 489 (751)
Q Consensus 436 ~---------------~~~i~-------~~v~~~~~~~~~~~~rIft~GiG-~~~n~~lL~~LA~~ggG~~~~i~~~ 489 (751)
- ..+.. +.-|+........++-|--|-+. .+.|-.-|..|++.+||..++....
T Consensus 435 lG~G~L~~rEdp~~~~s~~~~qlL~~~t~FYK~~a~~cs~~qI~VDlFl~s~qY~DlAsLs~LskySgG~~y~YP~f 511 (887)
T KOG1985|consen 435 LGAGKLKPREDPNVRSSDEDSQLLSPATDFYKDLALECSKSQICVDLFLFSEQYTDLASLSCLSKYSGGQVYYYPSF 511 (887)
T ss_pred CCccccccccccccccchhhhhccCCCchHHHHHHHHhccCceEEEEEeecccccchhhhhccccccCceeEEccCC
Confidence 0 00000 11122211111223334444443 3567788999999999987765443
No 77
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.15 E-value=0.006 Score=68.92 Aligned_cols=147 Identities=17% Similarity=0.210 Sum_probs=103.1
Q ss_pred CCceEEEEEcCCCCCC---------------CChHHHHHHHHHHHHHhcCCCCcEEEEEeCCceE-------Eeeccccc
Q 004469 324 FRKDVVFLVDVSGSMQ---------------GVLLEQTKNALSASLSKLNPQDSFNIIAFNGETH-------LFSSSMKL 381 (751)
Q Consensus 324 ~~~~vvfviD~SgSM~---------------g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~-------~~~~~~~~ 381 (751)
...++++-||-+.|-. -...++|..++-..|+...++.+|--+.||.... .|.-...+
T Consensus 284 ~~lnf~vgIDfTaSNg~p~~~sSLHyi~p~~~N~Y~~Ai~~vG~~lq~ydsdk~fpa~GFGakip~~~~vs~~f~ln~~~ 363 (529)
T KOG1327|consen 284 EQLNFTVGIDFTASNGDPRNPSSLHYIDPHQPNPYEQAIRSVGETLQDYDSDKLFPAFGFGAKIPPDGQVSHEFVLNFNP 363 (529)
T ss_pred ceeeeEEEEEEeccCCCCCCCCcceecCCCCCCHHHHHHHHHhhhhcccCCCCccccccccccCCCCcccccceeecCCC
Confidence 3467888888887732 2367888888888899889999999999998821 11111111
Q ss_pred cC-----HhH-HHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCC---CCccEEEEEecCCCCChhhHHHHHHHHhhccC
Q 004469 382 AS-----QGT-IINATQWLSSLVAGGGTNILLPLKQAIKLLSDTS---ESIPLIFLITDGTVGDERGICNEIKSYLTNTR 452 (751)
Q Consensus 382 ~t-----~~~-i~~a~~~I~~l~a~GgT~l~~aL~~A~~~l~~~~---~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~ 452 (751)
.+ -+. ++.-.+.+.+++.-|.|++..-|.++.+...+.. ...-.++++|||.+++..++.+.+-++ .
T Consensus 364 ~~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~~~~qY~VLlIitDG~vTdm~~T~~AIV~A----S 439 (529)
T KOG1327|consen 364 EDPECRGIEGVLEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGNTAGQYHVLLIITDGVVTDMKETRDAIVSA----S 439 (529)
T ss_pred CCCccccHHHHHHHHHhhcccccccCCCccHHHHHHHHHHHHHhccCCcceEEEEEEeCCccccHHHHHHHHHhh----c
Confidence 11 122 2233344447778899999999999998876543 223367899999999988887777655 3
Q ss_pred CCCCeEEEEEecCCCCHHHHHHH
Q 004469 453 SISPRICTFGVGLYCNHYFLQIL 475 (751)
Q Consensus 453 ~~~~rIft~GiG~~~n~~lL~~L 475 (751)
.....|..||+|+. +...|+.|
T Consensus 440 ~lPlSIIiVGVGd~-df~~M~~l 461 (529)
T KOG1327|consen 440 DLPLSIIIVGVGDA-DFDMMREL 461 (529)
T ss_pred cCCeEEEEEEeCCC-CHHHHHHh
Confidence 45578999999954 77777777
No 78
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.08 E-value=0.0022 Score=68.80 Aligned_cols=107 Identities=21% Similarity=0.307 Sum_probs=66.9
Q ss_pred CCCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcC-CCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhc-CC-C
Q 004469 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN-PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSS-LV-A 399 (751)
Q Consensus 323 ~~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~-~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~-l~-a 399 (751)
..+.+++++.|+||||++- . .....++..|. .-.++-+..|++........+ .....+.|+..+.. .. .
T Consensus 216 ~~~~~lvvL~DVSGSm~~y----s-~~~L~l~hAl~q~~~R~~~F~F~TRLt~vT~~l---~~rD~~~Al~~~~a~v~dw 287 (395)
T COG3552 216 RRKPPLVVLCDVSGSMSGY----S-RIFLHLLHALRQQRSRVHVFLFGTRLTRVTHML---RERDLEDALRRLSAQVKDW 287 (395)
T ss_pred cCCCCeEEEEecccchhhh----H-HHHHHHHHHHHhcccceeEEEeechHHHHHHHh---ccCCHHHHHHHHHhhcccc
Confidence 4567899999999999763 1 12222222222 234556999999865543322 34556666666663 33 3
Q ss_pred CCCCchHHHHHHHHHHhhcC-CCCccEEEEEecCCCCCh
Q 004469 400 GGGTNILLPLKQAIKLLSDT-SESIPLIFLITDGTVGDE 437 (751)
Q Consensus 400 ~GgT~l~~aL~~A~~~l~~~-~~~~~~IiLlTDG~~~~~ 437 (751)
+|||.|...+..-++..... -.....|+++|||...+.
T Consensus 288 ~ggTrig~tl~aF~~~~~~~~L~~gA~VlilsDg~drd~ 326 (395)
T COG3552 288 DGGTRIGNTLAAFLRRWHGNVLSGGAVVLILSDGLDRDD 326 (395)
T ss_pred cCCcchhHHHHHHHccccccccCCceEEEEEecccccCC
Confidence 49999999987665543321 123358999999987544
No 79
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=96.96 E-value=0.01 Score=56.88 Aligned_cols=120 Identities=18% Similarity=0.251 Sum_probs=85.9
Q ss_pred ChHHHHHHHHHHHHHhcCCCCcEEEEEeCCceE-------Eeeccc-----cccC-HhHHHHHHHHHhcCCCCCCCchHH
Q 004469 341 VLLEQTKNALSASLSKLNPQDSFNIIAFNGETH-------LFSSSM-----KLAS-QGTIINATQWLSSLVAGGGTNILL 407 (751)
Q Consensus 341 ~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~-------~~~~~~-----~~~t-~~~i~~a~~~I~~l~a~GgT~l~~ 407 (751)
...++|-.++..+|+....+..|-++.||.... .|.-.. .-.. +.-++.-.+.+.+++..|.|++..
T Consensus 11 N~Y~~ai~~vg~il~~Yd~dk~~p~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~~v~l~GPT~fap 90 (146)
T PF07002_consen 11 NPYQQAIRAVGEILQDYDSDKMIPAYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALPKVQLSGPTNFAP 90 (146)
T ss_pred CHHHHHHHHHHHHHHhhccCCccceeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhhheEECCCccHHH
Confidence 467888899999999999899999999998642 111000 0011 123444455666788889999999
Q ss_pred HHHHHHHHhhc---CCCCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEec
Q 004469 408 PLKQAIKLLSD---TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVG 464 (751)
Q Consensus 408 aL~~A~~~l~~---~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG 464 (751)
-+++|.+.... .....-.++++|||.++|..+..+.+.++. ...+.|..+|+|
T Consensus 91 iI~~a~~~a~~~~~~~~~Y~iLlIlTDG~i~D~~~T~~aIv~AS----~~PlSIIiVGVG 146 (146)
T PF07002_consen 91 IINHAAKIAKQSNQNGQQYFILLILTDGQITDMEETIDAIVEAS----KLPLSIIIVGVG 146 (146)
T ss_pred HHHHHHHHHhhhccCCceEEEEEEecccccccHHHHHHHHHHHc----cCCeEEEEEEeC
Confidence 99999988763 122334778999999999988888777663 345788888987
No 80
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=96.79 E-value=0.067 Score=59.35 Aligned_cols=186 Identities=17% Similarity=0.125 Sum_probs=105.6
Q ss_pred eEEEEEeCCCCCCCCCCCceEEEEEcCCCCCCCChHHHHHHHHHHHH---HhcCCCCcEEEEEeCCceE-Eeec------
Q 004469 308 IFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASL---SKLNPQDSFNIIAFNGETH-LFSS------ 377 (751)
Q Consensus 308 ~f~l~l~P~~~~~~~~~~~~vvfviD~SgSM~g~~i~~aK~al~~~L---~~L~~~d~f~Ii~F~~~~~-~~~~------ 377 (751)
.|.+.+.+. +..|.|++|++|.|+||.. .++..|.....+. +.+..+-|+++=+|-+... .|..
T Consensus 87 ~f~~~~~~a-----~~yPvDLYyLMDlS~SM~d-dl~~lk~lg~~L~~~m~~it~n~rlGfGsFVDK~v~P~~~t~p~~l 160 (423)
T smart00187 87 NFTLTVRQA-----EDYPVDLYYLMDLSYSMKD-DLDNLKSLGDDLAREMKGLTSNFRLGFGSFVDKTVSPFVSTRPEKL 160 (423)
T ss_pred EEEEEEEec-----ccCccceEEEEeCCccHHH-HHHHHHHHHHHHHHHHHhcccCceeeEEEeecCccCCcccCCHHHh
Confidence 455555443 2468999999999999965 5667776655554 4555677888877766521 1100
Q ss_pred ------------------cccccCHhHHHHHHHHHhcCCCCCCCch----HHHHHHHH---HHhhcCCCCccEEEEEecC
Q 004469 378 ------------------SMKLASQGTIINATQWLSSLVAGGGTNI----LLPLKQAI---KLLSDTSESIPLIFLITDG 432 (751)
Q Consensus 378 ------------------~~~~~t~~~i~~a~~~I~~l~a~GgT~l----~~aL~~A~---~~l~~~~~~~~~IiLlTDG 432 (751)
...+.| ++..+..+.|++....|+-+- ..||-.|. +.+.=+++..+.+||.||+
T Consensus 161 ~~PC~~~~~~c~p~f~f~~~L~LT-~~~~~F~~~V~~~~iSgN~D~PEgG~DAimQaaVC~~~IGWR~~a~rllv~~TDa 239 (423)
T smart00187 161 ENPCPNYNLTCEPPYGFKHVLSLT-DDTDEFNEEVKKQRISGNLDAPEGGFDAIMQAAVCTEQIGWREDARRLLVFSTDA 239 (423)
T ss_pred cCCCcCCCCCcCCCcceeeeccCC-CCHHHHHHHHhhceeecCCcCCcccHHHHHHHHhhccccccCCCceEEEEEEcCC
Confidence 001122 356667777777666655542 23333332 1111023456788999998
Q ss_pred CCC--------------------------------ChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHHhCC
Q 004469 433 TVG--------------------------------DERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGR 480 (751)
Q Consensus 433 ~~~--------------------------------~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~~gg 480 (751)
... |.. .+..+.+.+.+.+ -..||++ -.. ...+.+.|+..=.
T Consensus 240 ~fH~AGDGkLaGIv~PNDg~CHL~~~g~Yt~s~~~DYP-Si~ql~~kL~e~n--I~~IFAV--T~~-~~~~Y~~Ls~lip 313 (423)
T smart00187 240 GFHFAGDGKLAGIVQPNDGQCHLDNNGEYTMSTTQDYP-SIGQLNQKLAENN--INPIFAV--TKK-QVSLYKELSALIP 313 (423)
T ss_pred CccccCCcceeeEecCCCCcceeCCCCCcCccCcCCCC-CHHHHHHHHHhcC--ceEEEEE--ccc-chhHHHHHHHhcC
Confidence 642 111 2344444444322 1356665 222 2346677777666
Q ss_pred CEEEE--eCCCccHHHHHHHHHHHhccc
Q 004469 481 GYYDS--AYDPGSVDYRIRRFFTAASSV 506 (751)
Q Consensus 481 G~~~~--i~~~~~l~~~l~~~l~~~~~p 506 (751)
|...- ..|...+-+.+.+.+.++.+.
T Consensus 314 gs~vg~Ls~DSsNIv~LI~~aY~~i~S~ 341 (423)
T smart00187 314 GSSVGVLSEDSSNVVELIKDAYNKISSR 341 (423)
T ss_pred cceeeecccCcchHHHHHHHHHHhhceE
Confidence 65543 355577877777777777654
No 81
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=96.76 E-value=0.0055 Score=63.04 Aligned_cols=107 Identities=21% Similarity=0.299 Sum_probs=62.2
Q ss_pred EEEEEcCCCCCCC------ChHHHHHHHHHHHHHhc---CCCCcEEEEEeCCceEEe-------e-----ccccccCHhH
Q 004469 328 VVFLVDVSGSMQG------VLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHLF-------S-----SSMKLASQGT 386 (751)
Q Consensus 328 vvfviD~SgSM~g------~~i~~aK~al~~~L~~L---~~~d~f~Ii~F~~~~~~~-------~-----~~~~~~t~~~ 386 (751)
++|+||+|.||.. .+++.|.+++..+++.. .+.|.++|+.||++...- . ..+...+.+.
T Consensus 2 ~vflID~s~sM~~~~~~~~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~~l~~l~~~~~~~ 81 (224)
T PF03731_consen 2 TVFLIDVSPSMFEPSSESESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIFVLQPLDPPSAER 81 (224)
T ss_dssp EEEEEE-SCGGGS-BTTCS-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEEEEEECC--BHHH
T ss_pred EEEEEECCHHHCCCCCCcchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceEEeecCCccCHHH
Confidence 7999999999972 25888888888777544 467999999998764321 0 1122334444
Q ss_pred HHHHHHHHhc-------CCCCCCCchHHHHHHHHHHhhc--C--CCCccEEEEEecCCC
Q 004469 387 IINATQWLSS-------LVAGGGTNILLPLKQAIKLLSD--T--SESIPLIFLITDGTV 434 (751)
Q Consensus 387 i~~a~~~I~~-------l~a~GgT~l~~aL~~A~~~l~~--~--~~~~~~IiLlTDG~~ 434 (751)
+....+.+.. .......++..+|..+..++.. . ....+.|||+||+..
T Consensus 82 l~~L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~ 140 (224)
T PF03731_consen 82 LKELEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDG 140 (224)
T ss_dssp HHHHHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SS
T ss_pred HHHHHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCC
Confidence 4444333322 1123456899999999998864 1 224578999999874
No 82
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.25 Score=58.43 Aligned_cols=288 Identities=13% Similarity=0.156 Sum_probs=155.7
Q ss_pred CCCCceEEEEEcCCCC--CCCChHHHHHHHHHHHHHhcC---CCCcEEEEEeCCceEEeecc------------------
Q 004469 322 KVFRKDVVFLVDVSGS--MQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSS------------------ 378 (751)
Q Consensus 322 ~~~~~~vvfviD~SgS--M~g~~i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~------------------ 378 (751)
.+.+-.+||+||+|-. |.| -...+-++++.+|..|+ ++.+++|++|++.++.|...
T Consensus 414 ~p~ppafvFmIDVSy~Ai~~G-~~~a~ce~ik~~l~~lp~~~p~~~Vgivtfd~tvhFfnl~s~L~qp~mliVsdv~dvf 492 (1007)
T KOG1984|consen 414 PPKPPAFVFMIDVSYNAISNG-AVKAACEAIKSVLEDLPREEPNIRVGIVTFDKTVHFFNLSSNLAQPQMLIVSDVDDVF 492 (1007)
T ss_pred CCCCceEEEEEEeehhhhhcc-hHHHHHHHHHHHHhhcCccCCceEEEEEEecceeEeeccCccccCceEEEeecccccc
Confidence 3567899999999843 444 34556677888888776 57899999999997654311
Q ss_pred -------ccc--cCHhHHHHHHHHHhcCCCC-CC--CchHHHHHHHHHHhhcCCCCccEEEEEecCCCC-----------
Q 004469 379 -------MKL--ASQGTIINATQWLSSLVAG-GG--TNILLPLKQAIKLLSDTSESIPLIFLITDGTVG----------- 435 (751)
Q Consensus 379 -------~~~--~t~~~i~~a~~~I~~l~a~-Gg--T~l~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~----------- 435 (751)
++. .+..-++.++..|..+-.+ +- |-+..+|+.|+..++...+ -.+|+++--.++
T Consensus 493 vPf~~g~~V~~~es~~~i~~lLd~Ip~mf~~sk~pes~~g~alqaa~lalk~~~g--GKl~vF~s~Lpt~g~g~kl~~r~ 570 (1007)
T KOG1984|consen 493 VPFLDGLFVNPNESRKVIELLLDSIPTMFQDSKIPESVFGSALQAAKLALKAADG--GKLFVFHSVLPTAGAGGKLSNRD 570 (1007)
T ss_pred cccccCeeccchHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHhccCC--ceEEEEecccccccCcccccccc
Confidence 111 1234566677777766555 33 4568899999988875432 233333332221
Q ss_pred ---------------ChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHHhCCCEEEEeCCCcc---HHHHHH
Q 004469 436 ---------------DERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGS---VDYRIR 497 (751)
Q Consensus 436 ---------------~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~~ggG~~~~i~~~~~---l~~~l~ 497 (751)
..++....+.+...+. ...+.+|.+-- ..+|..-|-.+.+.+||..+....... -..-++
T Consensus 571 D~~l~~t~kek~l~~pq~~~y~~LA~e~v~~-g~svDlF~t~~-ayvDvAtlg~v~~~TgG~vy~Y~~F~a~~D~~rl~n 648 (1007)
T KOG1984|consen 571 DRRLIGTDKEKNLLQPQDKTYTTLAKEFVES-GCSVDLFLTPN-AYVDVATLGVVPALTGGQVYKYYPFQALTDGPRLLN 648 (1007)
T ss_pred hhhhhcccchhhccCcchhHHHHHHHHHHHh-CceEEEEEccc-ceeeeeeecccccccCceeEEecchhhcccHHHHHH
Confidence 0111222232222221 23455555422 234666677788899998776655332 234456
Q ss_pred HHHHHhccceEeeEEEEee--cCCCceeec-------C--CCCCcccCCCcEEEEEEEcCCCCcE-------EEEEEEec
Q 004469 498 RFFTAASSVFLTNMTLETS--KHLNSLELF-------P--SHIPDFCLECPLIVSGRYSGNFGDS-------VQVSGTMA 559 (751)
Q Consensus 498 ~~l~~~~~p~l~di~l~~~--~~~~~~ev~-------p--~~ip~l~~g~~l~v~G~~~g~~~~~-------v~l~g~~~ 559 (751)
++...+..+.--+..++.. .++...+.+ + ..++.|-.++.+.|--++.++..+. ..+-.+..
T Consensus 649 DL~~~vtk~~gf~a~mrvRtStGirv~~f~Gnf~~~~~tDiela~lD~dkt~~v~fkhDdkLq~~s~~~fQ~AlLYTti~ 728 (1007)
T KOG1984|consen 649 DLVRNVTKKQGFDAVMRVRTSTGIRVQDFYGNFLMRNPTDIELAALDCDKTLTVEFKHDDKLQDGSDVHFQTALLYTTID 728 (1007)
T ss_pred HHHHhcccceeeeeEEEEeecCceeeeeeechhhhcCCCCccccccccCceeEEEEeccccccCCcceeEEEEEEEeccC
Confidence 6666666665544444332 232222221 2 2456677778888887777665431 11112233
Q ss_pred CcceE-EEEEecc--c--------cCCCchhHHHHHHHHHHHHHhhhhccCHHHHHHHHHHHHhhC
Q 004469 560 DTSNF-IIELKAQ--N--------AKDIPLDRLLARRQIEILTAQAWFSESKELEEKVAKMSIQTG 614 (751)
Q Consensus 560 ~~~~~-~~~l~~~--~--------~~~~~l~~lwA~~~I~~L~~~~~~~~~~~~k~eii~LS~~y~ 614 (751)
|.+.. .+.+.+. . .+--++-...|+..+..+.+...-.-++.+...++++=..|+
T Consensus 729 G~RR~Rv~Nlsl~~ts~l~~lyr~~~~d~l~a~maK~a~~~i~~~~lk~vre~l~~~~~~iL~~YR 794 (1007)
T KOG1984|consen 729 GQRRLRVLNLSLAVTSQLSELYRSADTDPLIAIMAKQAAKAILDKPLKEVREQLVSQCAQILASYR 794 (1007)
T ss_pred CceeEEEEecchhhhhhHHHHHHhcCccHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 33222 1122211 1 112245566677666666554333334555666666666663
No 83
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.41 E-value=0.1 Score=55.38 Aligned_cols=166 Identities=14% Similarity=0.149 Sum_probs=95.5
Q ss_pred eEEEEEcCCCCCCC--------ChHHHHHHHHHHHHH---hcCCCCcEEEEEeCCce-EEeeccccc-------------
Q 004469 327 DVVFLVDVSGSMQG--------VLLEQTKNALSASLS---KLNPQDSFNIIAFNGET-HLFSSSMKL------------- 381 (751)
Q Consensus 327 ~vvfviD~SgSM~g--------~~i~~aK~al~~~L~---~L~~~d~f~Ii~F~~~~-~~~~~~~~~------------- 381 (751)
=+++|+|++.--.| ..+.++-+++..++. .+....++.||+..+.. +.+.|....
T Consensus 4 lL~vvlD~np~~W~~~~~~~~~~~l~~~l~sllvF~NahL~l~~~N~vaVIAs~~~~~~~LYps~~~~~~~~~~~~~~~~ 83 (279)
T TIGR00627 4 LLVVIIEANPCSWGMLALAHGKRTISKVLRAIVVFLNAHLAFNANNKLAVIASHSQDNKYLYPSTRCEDRNASELDPKRL 83 (279)
T ss_pred EEEEEEeCCHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCccCCEEEEEecCCcceEEecCCccccccccccccccc
Confidence 36788888765432 245555555555553 34568899999886553 333332100
Q ss_pred ----------cCHhHHHHHHHHHhcC----CCCCCCchHHHHHHHHHHhhcC-------CCCccEEEEEecCCCCChhhH
Q 004469 382 ----------ASQGTIINATQWLSSL----VAGGGTNILLPLKQAIKLLSDT-------SESIPLIFLITDGTVGDERGI 440 (751)
Q Consensus 382 ----------~t~~~i~~a~~~I~~l----~a~GgT~l~~aL~~A~~~l~~~-------~~~~~~IiLlTDG~~~~~~~i 440 (751)
++..-+++..+.++.. ...+.|.|..||..|+-..... .+-..+|++++-+. +...+-
T Consensus 84 ~~~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~lagals~ALcyinr~~~~~~~~~~~~~RIlii~~s~-~~~~qY 162 (279)
T TIGR00627 84 RELLYRDFRTVDETIVEEIKPLMAHADKHMKKDSRTVLAGALSDALGYINRSEQSETASEKLKSRILVISITP-DMALQY 162 (279)
T ss_pred cchhccchhHHHHHHHHHHHHHHhhchhcccccccccchhHHHhhhhhhcccccccccCcCCcceEEEEECCC-CchHHH
Confidence 0001122222333321 1225678899999998776432 11234666666543 322222
Q ss_pred HHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHHhCCCEEEEeCCCccHHH
Q 004469 441 CNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDY 494 (751)
Q Consensus 441 ~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~~ggG~~~~i~~~~~l~~ 494 (751)
+..+ +.+......+++|.+++++...+..+|++++..|||.|..+.+.+.+.+
T Consensus 163 i~~m-n~Ifaaqk~~I~Idv~~L~~e~~~~~lqQa~~~TgG~Y~~~~~~~~L~q 215 (279)
T TIGR00627 163 IPLM-NCIFSAQKQNIPIDVVSIGGDFTSGFLQQAADITGGSYLHVKKPQGLLQ 215 (279)
T ss_pred HHHH-HHHHHHHHcCceEEEEEeCCccccHHHHHHHHHhCCEEeccCCHhHHHH
Confidence 2222 2222223356999999998765689999999999999998887665544
No 84
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=96.38 E-value=1 Score=52.93 Aligned_cols=309 Identities=16% Similarity=0.165 Sum_probs=155.4
Q ss_pred EEeCCCCCCCCCCCceEEEEEcCC-CCCCCChHHHHHHHHHHHHHhcC---CCCcEEEEEeCCceEEeeccccc------
Q 004469 312 YLFPGKSQSRKVFRKDVVFLVDVS-GSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKL------ 381 (751)
Q Consensus 312 ~l~P~~~~~~~~~~~~vvfviD~S-gSM~g~~i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~~------ 381 (751)
++.|+.-..+.+.|..+||+||+| .||...-...+.+++...|..++ +..+++|+.|++..+.|......
T Consensus 263 f~ap~~Y~~~~p~P~~yvFlIDVS~~a~~~g~~~a~~r~Il~~l~~~~~~dpr~kIaii~fD~sl~ffk~s~d~~~~~~~ 342 (861)
T COG5028 263 FLAPKEYSLRQPPPPVYVFLIDVSFEAIKNGLVKAAIRAILENLDQIPNFDPRTKIAIICFDSSLHFFKLSPDLDEQMLI 342 (861)
T ss_pred EecccceeeccCCCCEEEEEEEeehHhhhcchHHHHHHHHHhhccCCCCCCCcceEEEEEEcceeeEEecCCCCccceee
Confidence 556766555556789999999999 34444344555555655555553 57899999999998765422110
Q ss_pred ----------cC-----------HhHHHHHHHHHhcCCCC-CCC--chHHHHHHHHHHhhcCCCCccEEEEE-e-----c
Q 004469 382 ----------AS-----------QGTIINATQWLSSLVAG-GGT--NILLPLKQAIKLLSDTSESIPLIFLI-T-----D 431 (751)
Q Consensus 382 ----------~t-----------~~~i~~a~~~I~~l~a~-GgT--~l~~aL~~A~~~l~~~~~~~~~IiLl-T-----D 431 (751)
.. ..+++..++.+..+-.+ +.+ .++.||+.|..++... + -+.|.++ | -
T Consensus 343 vsdld~pFlPf~s~~fv~pl~~~k~~~etLl~~~~~If~d~~~pk~~~G~aLk~a~~l~g~~-G-Gkii~~~stlPn~G~ 420 (861)
T COG5028 343 VSDLDEPFLPFPSGLFVLPLKSCKQIIETLLDRVPRIFQDNKSPKNALGPALKAAKSLIGGT-G-GKIIVFLSTLPNMGI 420 (861)
T ss_pred ecccccccccCCcchhcccHHHHHHHHHHHHHHhhhhhcccCCCccccCHHHHHHHHHhhcc-C-ceEEEEeecCCCccc
Confidence 01 12233355666655554 443 6789999998877653 2 2445444 3 2
Q ss_pred CCCC----Ch-------hhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHHhCCCEEEEeCCC--c---cHHHH
Q 004469 432 GTVG----DE-------RGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDP--G---SVDYR 495 (751)
Q Consensus 432 G~~~----~~-------~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~~ggG~~~~i~~~--~---~l~~~ 495 (751)
|... ++ +.....+.....+ ..+.+.+|.+.- .+.|...|-.+++.++|..++.... + +...-
T Consensus 421 Gkl~~r~d~e~~ll~c~d~fYk~~a~e~~k-~gIsvd~Flt~~-~yidvaTls~l~~~T~G~~~~Yp~f~~~~~~d~~kl 498 (861)
T COG5028 421 GKLQLREDKESSLLSCKDSFYKEFAIECSK-VGISVDLFLTSE-DYIDVATLSHLCRYTGGQTYFYPNFSATRPNDATKL 498 (861)
T ss_pred ccccccccchhhhccccchHHHHHHHHHHH-hcceEEEEeccc-cccchhhhcchhhccCcceEEcCCcccCCchhHHHH
Confidence 3332 11 1111222222211 123344554422 2357778899999999987765443 2 22222
Q ss_pred HHHHHHHhccceE--eeEEEEeecCCCceeec-------C--CCCCcccCCCcEEEEEEEcCCCCc-----EEEEEEEe-
Q 004469 496 IRRFFTAASSVFL--TNMTLETSKHLNSLELF-------P--SHIPDFCLECPLIVSGRYSGNFGD-----SVQVSGTM- 558 (751)
Q Consensus 496 l~~~l~~~~~p~l--~di~l~~~~~~~~~ev~-------p--~~ip~l~~g~~l~v~G~~~g~~~~-----~v~l~g~~- 558 (751)
..++.+.+..-.- .-+++....++.....| + -.++.+...+.+.+--.|.++... .+-+--+.
T Consensus 499 ~~dL~~~ls~~~gy~~~~rvR~S~glr~s~fyGnf~~rs~dl~~F~tm~rd~Sl~~~~sid~~l~~~~v~fQvAlL~T~~ 578 (861)
T COG5028 499 ANDLVSHLSMEIGYEAVMRVRCSTGLRVSSFYGNFFNRSSDLCAFSTMPRDTSLLVEFSIDEKLMTSDVYFQVALLYTLN 578 (861)
T ss_pred HHHHHHhhhhhhhhheeeEeeccCceehhhhhccccccCcccccccccCCCceEEEEEEecccccCCceEEEEEEEeecc
Confidence 2333333221110 01111111111111111 1 145667777877777677655321 11121222
Q ss_pred cCcc-eEEEEEecccc----------CCCchhHHHHHHHHHHHHHhhhhccCHHHHHHHHHHHHhhC--CCCccceEEE
Q 004469 559 ADTS-NFIIELKAQNA----------KDIPLDRLLARRQIEILTAQAWFSESKELEEKVAKMSIQTG--VPSEYTCMIL 624 (751)
Q Consensus 559 ~~~~-~~~~~l~~~~~----------~~~~l~~lwA~~~I~~L~~~~~~~~~~~~k~eii~LS~~y~--ivS~~TS~va 624 (751)
.|++ .-.+++..... +-.+|.++.|+..+...........++.+.+.++++=..|. ++.+.|+-..
T Consensus 579 ~GeRRiRVvn~s~~~ss~~~evyasadq~aIa~~lak~a~~~~~~~s~~~~r~~i~~s~~~IL~~Ykk~~~~snt~tql 657 (861)
T COG5028 579 DGERRIRVVNLSLPTSSSIREVYASADQLAIACILAKKASTKALNSSLKEARVLINKSMVDILKAYKKELVKSNTSTQL 657 (861)
T ss_pred CCceEEEEEEeccccchhHHHHHHhccHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Confidence 2332 22222222211 12346666666655554433222334566777778777886 4544444333
No 85
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p34 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0000439 core TFIIH complex
Probab=95.72 E-value=0.6 Score=49.69 Aligned_cols=166 Identities=17% Similarity=0.176 Sum_probs=95.6
Q ss_pred eEEEEEcCCCCCCC-----ChHHHHHHHHHHHHH---hcCCCCcEEEEEeCCce-EEeecccc----------ccC----
Q 004469 327 DVVFLVDVSGSMQG-----VLLEQTKNALSASLS---KLNPQDSFNIIAFNGET-HLFSSSMK----------LAS---- 383 (751)
Q Consensus 327 ~vvfviD~SgSM~g-----~~i~~aK~al~~~L~---~L~~~d~f~Ii~F~~~~-~~~~~~~~----------~~t---- 383 (751)
=+++|+|++..-.+ ..+.++-+++..+++ .+....++.||+.+... +.+.|... ..+
T Consensus 3 LLvIILD~nP~~W~~~~~~~~l~~~l~~llvFlNahL~l~~~N~vaVIAs~~~~s~~LYP~~~~~~~~~~~~~~~~~~~~ 82 (276)
T PF03850_consen 3 LLVIILDTNPLAWGQLSDQLSLSQFLDSLLVFLNAHLALNHSNQVAVIASHSNSSKFLYPSPSSSESSNSGDVEMNSSDS 82 (276)
T ss_pred EEEEEEECCHHHHhhccccccHHHHHHHHHHHHHHHHhhCccCCEEEEEEcCCccEEEeCCCccccccCCCccccccccc
Confidence 36889999866543 256666666666664 34567899999987664 33333222 000
Q ss_pred ---------HhH-HHHHHHHHhcCCCC----CCCchHHHHHHHHHHhhcC----C----CCccEEEEEecCCCCChhhHH
Q 004469 384 ---------QGT-IINATQWLSSLVAG----GGTNILLPLKQAIKLLSDT----S----ESIPLIFLITDGTVGDERGIC 441 (751)
Q Consensus 384 ---------~~~-i~~a~~~I~~l~a~----GgT~l~~aL~~A~~~l~~~----~----~~~~~IiLlTDG~~~~~~~i~ 441 (751)
++. .++..+.+++.... ..+.|..||..|+-..... . .-..+|+++.-+..+...+-+
T Consensus 83 ~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~LagALS~ALCyINR~~~~~~~~~~~~~~RILv~~s~s~d~~~QYi 162 (276)
T PF03850_consen 83 NKYRQFRNVDETVLEELKKLMSETSESSDSTTSSLLAGALSMALCYINRISRESPSGGTSLKSRILVIVSGSPDSSSQYI 162 (276)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHhhhhhcccCCCCCcCccEEEEEecCCCccHHHH
Confidence 111 12222333332222 1278888998888665432 1 122245442334433333333
Q ss_pred HHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHHhCCCEEEEeCCCccHHH
Q 004469 442 NEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDY 494 (751)
Q Consensus 442 ~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~~ggG~~~~i~~~~~l~~ 494 (751)
..+.- .=.+...++.|-++-+|. .+..+|++.+..+||.|..+...+.+-+
T Consensus 163 ~~MN~-iFaAqk~~v~IDv~~L~~-~~s~fLqQa~d~T~G~y~~~~~~~~l~q 213 (276)
T PF03850_consen 163 PLMNC-IFAAQKQKVPIDVCKLGG-KDSTFLQQASDITGGIYLKVSKPEGLLQ 213 (276)
T ss_pred HHHHH-HHHHhcCCceeEEEEecC-CchHHHHHHHHHhCceeeccCccccHHH
Confidence 33322 222234567888888888 5789999999999999999988776543
No 86
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=95.56 E-value=0.15 Score=53.21 Aligned_cols=171 Identities=18% Similarity=0.188 Sum_probs=101.1
Q ss_pred CCceEEEEEcCCCCCCCChHHHHHH------HHHHHHHhc--CCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHh
Q 004469 324 FRKDVVFLVDVSGSMQGVLLEQTKN------ALSASLSKL--NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS 395 (751)
Q Consensus 324 ~~~~vvfviD~SgSM~g~~i~~aK~------al~~~L~~L--~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~ 395 (751)
.=+.+++++|.|.+|.-..+--.+. |...+.+-. .|-.+++||...+..-.+...+ .. |.+.-+..++
T Consensus 86 IiRhl~l~lD~Seam~e~Df~p~r~a~vikya~~Fv~eFf~qNPiSqlsii~irdg~a~~~s~~-~g---npq~hi~~lk 161 (421)
T COG5151 86 IIRHLHLILDVSEAMDESDFLPTRRANVIKYAEGFVPEFFSQNPISQLSIISIRDGCAKYTSSM-DG---NPQAHIGQLK 161 (421)
T ss_pred hhheeEEEEEhhhhhhhhhccchHHHHHHHHHHHHhHHHhccCCchheeeeehhhhHHHHhhhc-CC---CHHHHHHHhh
Confidence 3478999999999998643322222 222222222 3456788888877643332222 22 3334444455
Q ss_pred cCC-CCCCCchHHHHHHHHH-HhhcCCCCccEE-EEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHH
Q 004469 396 SLV-AGGGTNILLPLKQAIK-LLSDTSESIPLI-FLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFL 472 (751)
Q Consensus 396 ~l~-a~GgT~l~~aL~~A~~-~l~~~~~~~~~I-iLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL 472 (751)
++. ..|.-.|..||+.|-- ++.......+.| |++..=..+|...+.+.+.+.+. .++|++.+|+... -.+.
T Consensus 162 S~rd~~gnfSLqNaLEmar~~l~~~~~H~trEvLiifgS~st~DPgdi~~tid~Lv~----~~IrV~~igL~ae--vaic 235 (421)
T COG5151 162 SKRDCSGNFSLQNALEMARIELMKNTMHGTREVLIIFGSTSTRDPGDIAETIDKLVA----YNIRVHFIGLCAE--VAIC 235 (421)
T ss_pred cccccCCChhHHhHHHHhhhhhcccccccceEEEEEEeecccCCCccHHHHHHHHHh----hceEEEEEeehhH--HHHH
Confidence 444 4588899999999844 443322324544 33332233455556555555443 3589999988664 5788
Q ss_pred HHHHHhC----CCEEEEeCCCccHHHHHHHHHHHhccceE
Q 004469 473 QILAQIG----RGYYDSAYDPGSVDYRIRRFFTAASSVFL 508 (751)
Q Consensus 473 ~~LA~~g----gG~~~~i~~~~~l~~~l~~~l~~~~~p~l 508 (751)
+.|..++ .|.|+..-+..-+ ..++.++..|.-
T Consensus 236 KeickaTn~~~e~~y~v~vde~Hl----~el~~E~~~P~~ 271 (421)
T COG5151 236 KEICKATNSSTEGRYYVPVDEGHL----SELMRELSHPTD 271 (421)
T ss_pred HHHHhhcCcCcCceeEeeecHHHH----HHHHHhcCCCCC
Confidence 9999888 7888877665444 456666777653
No 87
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.47 E-value=0.042 Score=57.62 Aligned_cols=94 Identities=20% Similarity=0.250 Sum_probs=59.7
Q ss_pred eEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHh-cCCCCCCCch
Q 004469 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS-SLVAGGGTNI 405 (751)
Q Consensus 327 ~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~-~l~a~GgT~l 405 (751)
.++.++|+||||....++++..-+..+++ .++.+..++.-+..+..... +.. =+|+. .+..+|||++
T Consensus 263 ~i~vaVDtSGS~~d~ei~a~~~Ei~~Il~--~~~~eltli~~D~~v~~~~~----~r~------g~~~~~~~~ggG~Tdf 330 (396)
T COG3864 263 KIVVAVDTSGSMTDAEIDAAMTEIFDILK--NKNYELTLIECDNIVRRMYR----VRK------GRDMKKKLDGGGGTDF 330 (396)
T ss_pred heEEEEecCCCccHHHHHHHHHHHHHHHh--CCCcEEEEEEecchhhhhhc----cCC------cccCCcccCCCCCccc
Confidence 58899999999987666665555555552 25778888888877653211 000 12233 3445577999
Q ss_pred HHHHHHHHHHhhcCCCCccEEEEEecCCCCCh
Q 004469 406 LLPLKQAIKLLSDTSESIPLIFLITDGTVGDE 437 (751)
Q Consensus 406 ~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~ 437 (751)
..+++..-+. ......|++|||.-+.+
T Consensus 331 ~Pvfeylek~-----~~~~~lIyfTDG~gd~p 357 (396)
T COG3864 331 SPVFEYLEKN-----RMECFLIYFTDGMGDQP 357 (396)
T ss_pred cHHHHHHHhh-----cccceEEEEccCCCCcc
Confidence 8877643221 12368899999996543
No 88
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=95.30 E-value=0.29 Score=57.76 Aligned_cols=109 Identities=19% Similarity=0.305 Sum_probs=72.1
Q ss_pred CceEEEEEcCCCCCCC--------ChHHHHHHHHHHHHHhc---CCCCcEEEEEeCCceE----------EeeccccccC
Q 004469 325 RKDVVFLVDVSGSMQG--------VLLEQTKNALSASLSKL---NPQDSFNIIAFNGETH----------LFSSSMKLAS 383 (751)
Q Consensus 325 ~~~vvfviD~SgSM~g--------~~i~~aK~al~~~L~~L---~~~d~f~Ii~F~~~~~----------~~~~~~~~~t 383 (751)
.--|+|+||+|.||.. .++..+.+++..++++. .++|.++|+.||++.. .+.+ +...+
T Consensus 10 keailflIDvs~sM~~~~~~~~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t~n~~~~~~i~v~~~-L~~p~ 88 (584)
T TIGR00578 10 RDSLIFLVDASKAMFEESQGEDELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKDKNSVNFKNIYVLQE-LDNPG 88 (584)
T ss_pred eeEEEEEEECCHHHcCCCcCcCcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCCCCccCCCceEEEee-CCCCC
Confidence 4578999999999984 35778888888777655 4799999999998642 1222 33345
Q ss_pred HhHHHHHHHHHhc-----C--CCC-CC-CchHHHHHHHHHHhhcC--CCCccEEEEEecCCC
Q 004469 384 QGTIINATQWLSS-----L--VAG-GG-TNILLPLKQAIKLLSDT--SESIPLIFLITDGTV 434 (751)
Q Consensus 384 ~~~i~~a~~~I~~-----l--~a~-Gg-T~l~~aL~~A~~~l~~~--~~~~~~IiLlTDG~~ 434 (751)
.+.+.+....+.. + ..+ +. ..+..+|-.+.+++... .-..+.|+|+||-..
T Consensus 89 a~~i~~L~~l~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~~~~k~~~kRI~lfTd~D~ 150 (584)
T TIGR00578 89 AKRILELDQFKGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSDVQFRMSHKRIMLFTNEDN 150 (584)
T ss_pred HHHHHHHHHHhhccCccchhhccCCCCCCcHHHHHHHHHHHHHhcchhhcCcEEEEECCCCC
Confidence 5555444333321 0 011 11 26799999999988752 123578999999863
No 89
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=1.3 Score=44.47 Aligned_cols=133 Identities=16% Similarity=0.195 Sum_probs=87.3
Q ss_pred ceEEEEEcCCCCCCC-----ChHHHHHHHHHHHHH-hc--CCCCcEEEEEeCC-ceEEeeccccccCHhHHHHHHHHHhc
Q 004469 326 KDVVFLVDVSGSMQG-----VLLEQTKNALSASLS-KL--NPQDSFNIIAFNG-ETHLFSSSMKLASQGTIINATQWLSS 396 (751)
Q Consensus 326 ~~vvfviD~SgSM~g-----~~i~~aK~al~~~L~-~L--~~~d~f~Ii~F~~-~~~~~~~~~~~~t~~~i~~a~~~I~~ 396 (751)
-..+++||.|--|+. .+++.-++++..+.. .+ .|...++|++..+ +++.+..... ..-..+..+..
T Consensus 4 Eatmi~iDNse~mrNgDy~PtRf~aQ~daVn~v~~~K~~snpEntvGiitla~a~~~vLsT~T~-----d~gkils~lh~ 78 (259)
T KOG2884|consen 4 EATMICIDNSEYMRNGDYLPTRFQAQKDAVNLVCQAKLRSNPENTVGIITLANASVQVLSTLTS-----DRGKILSKLHG 78 (259)
T ss_pred ceEEEEEeChHHhhcCCCChHHHHHHHHHHHHHHHhhhcCCcccceeeEeccCCCceeeeeccc-----cchHHHHHhcC
Confidence 457899999988873 478888999987763 44 3678999999988 6666653221 23456677888
Q ss_pred CCCCCCCchHHHHHHHHHHhhcCCCC---ccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCC
Q 004469 397 LVAGGGTNILLPLKQAIKLLSDTSES---IPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYC 467 (751)
Q Consensus 397 l~a~GgT~l~~aL~~A~~~l~~~~~~---~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~ 467 (751)
++..|+-++..+|+.|.-.++.+++. .|.|+|+-.-....+.++....++..+ .++-|-.|-+|...
T Consensus 79 i~~~g~~~~~~~i~iA~lalkhRqnk~~~~riVvFvGSpi~e~ekeLv~~akrlkk----~~Vaidii~FGE~~ 148 (259)
T KOG2884|consen 79 IQPHGKANFMTGIQIAQLALKHRQNKNQKQRIVVFVGSPIEESEKELVKLAKRLKK----NKVAIDIINFGEAE 148 (259)
T ss_pred CCcCCcccHHHHHHHHHHHHHhhcCCCcceEEEEEecCcchhhHHHHHHHHHHHHh----cCeeEEEEEecccc
Confidence 99999999999999887766654332 234444432222345555555444433 23556666677654
No 90
>COG2718 Uncharacterized conserved protein [Function unknown]
Probab=94.99 E-value=0.16 Score=54.95 Aligned_cols=162 Identities=18% Similarity=0.175 Sum_probs=86.9
Q ss_pred CceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCC-CCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCCCCCC
Q 004469 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP-QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGT 403 (751)
Q Consensus 325 ~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~-~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a~GgT 403 (751)
..-++-++|+||||.-..-+.||.....+-.-|.- =+++.|+...+....+. ++.+ .|. ..+-.|||
T Consensus 246 ~AVmfclMDvSGSM~~~~KdlAkrFF~lL~~FL~~kYenveivfIrHht~A~E-----VdE~------dFF-~~~esGGT 313 (423)
T COG2718 246 NAVMFCLMDVSGSMDQSEKDLAKRFFFLLYLFLRRKYENVEIVFIRHHTEAKE-----VDET------DFF-YSQESGGT 313 (423)
T ss_pred ceEEEEEEecCCCcchHHHHHHHHHHHHHHHHHhcccceeEEEEEeecCccee-----cchh------hce-eecCCCCe
Confidence 34455688999999987888888865443333331 23444544444433221 1211 112 12445999
Q ss_pred chHHHHHHHHHHhhcC---CCCccEEEEEecCCCC--ChhhHHHHHHHHhhccCCCCCeEEEEE-ecCCCCHHHHHHHHH
Q 004469 404 NILLPLKQAIKLLSDT---SESIPLIFLITDGTVG--DERGICNEIKSYLTNTRSISPRICTFG-VGLYCNHYFLQILAQ 477 (751)
Q Consensus 404 ~l~~aL~~A~~~l~~~---~~~~~~IiLlTDG~~~--~~~~i~~~v~~~~~~~~~~~~rIft~G-iG~~~n~~lL~~LA~ 477 (751)
-+..||+.+.+.+... .......+-.+||..+ |.......+.+.+-. .+..|+++ |-..-.+..|+.=+-
T Consensus 314 ivSSAl~~m~evi~ErYp~aeWNIY~fqaSDGDN~~dDserc~~ll~~~im~----~~~~y~Y~Eitq~~~H~t~~y~~~ 389 (423)
T COG2718 314 IVSSALKLMLEVIKERYPPAEWNIYAFQASDGDNWADDSERCVELLAKKLMP----VVQYYGYIEITQRRTHQTLEYEAL 389 (423)
T ss_pred EeHHHHHHHHHHHHhhCChhheeeeeeeecCCccccCCCHHHHHHHHHHHHH----hhhheEEEeeeecccchhhhhhhh
Confidence 9999999999998752 2234477899999864 333333444433221 12334332 111112223211111
Q ss_pred hC---CCEEEEeCCCccHHHHHHHHHHH
Q 004469 478 IG---RGYYDSAYDPGSVDYRIRRFFTA 502 (751)
Q Consensus 478 ~g---gG~~~~i~~~~~l~~~l~~~l~~ 502 (751)
.+ +=.+..|..++++-..+..+|.+
T Consensus 390 ~~~~dnFa~~~I~~~~Diypvfr~lf~k 417 (423)
T COG2718 390 QGVFDNFAMQTIREPDDIYPVFRELFSK 417 (423)
T ss_pred hccCcchheeeecCHHHHHHHHHHHHhc
Confidence 11 12345567778887777777654
No 91
>PF14415 DUF4424: Domain of unknown function (DUF4424)
Probab=94.49 E-value=2.8 Score=44.06 Aligned_cols=49 Identities=14% Similarity=0.248 Sum_probs=40.3
Q ss_pred EEEEEEEEEecccCCCceeEEEEEeecCC--------Cc----------eEEEEEEEECCEEEEEEEEee
Q 004469 101 FVAFNGSWRVHCIMAGRQCDCTIAVPLGE--------RG----------SLLGVEVEIDGRSYQSKLISL 152 (751)
Q Consensus 101 ~vtv~q~f~N~~~~~~~~~E~~y~FPLp~--------~a----------~V~gf~~~i~gk~i~g~V~ek 152 (751)
+|+|.-+|.| .+++.++....||||+ .+ .|.+|.++||||-+..++.-|
T Consensus 2 ~I~V~Y~F~N---~t~~dv~~~VaFPlP~i~~~~~~d~~~~~p~~~~~n~i~~Fk~~VdGk~v~~q~~~r 68 (253)
T PF14415_consen 2 RIRVRYVFRN---PTDQDVTVTVAFPLPDISGSPENDFAIAIPDNDSDNFIKDFKTTVDGKPVKPQVHQR 68 (253)
T ss_pred EEEEEEEEeC---CCCCcEEEEEEEeCCCCCCCccccccccccccCCcCccceEEEEECCEEcCceeEEE
Confidence 5788999999 4899999999999993 12 466799999999998888433
No 92
>KOG4465 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.46 E-value=0.2 Score=53.45 Aligned_cols=134 Identities=20% Similarity=0.208 Sum_probs=82.8
Q ss_pred CCCCCceEEEEEcCCCCCCCC----hHHHHHHH-HHHHHHhcCCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHh
Q 004469 321 RKVFRKDVVFLVDVSGSMQGV----LLEQTKNA-LSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS 395 (751)
Q Consensus 321 ~~~~~~~vvfviD~SgSM~g~----~i~~aK~a-l~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~ 395 (751)
.++..+.+.+-+|+|+||... .+. ++++ ....+-.+......-.++|.++....+ . ..+-.+.+...+++
T Consensus 423 a~ptgkr~~laldvs~sm~~rv~~s~ln-~reaaa~m~linlhnead~~~vaf~d~lte~p-f---tkd~kigqv~~~~n 497 (598)
T KOG4465|consen 423 AEPTGKRFCLALDVSASMNQRVLGSILN-AREAAAAMCLINLHNEADSRCVAFCDELTECP-F---TKDMKIGQVLDAMN 497 (598)
T ss_pred CCCCCceEEEEEecchhhhhhhhccccc-hHHHHhhhheeeeccccceeEEEeccccccCC-C---cccccHHHHHHHHh
Confidence 345678999999999999743 332 3333 333444555566678899998865432 1 13345667777787
Q ss_pred cCCCCCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCC-ChhhHHHHHHHHhhccCCCCCeEEEEEec
Q 004469 396 SLVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVG-DERGICNEIKSYLTNTRSISPRICTFGVG 464 (751)
Q Consensus 396 ~l~a~GgT~l~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~-~~~~i~~~v~~~~~~~~~~~~rIft~GiG 464 (751)
++.+ |||+-.-++..|-+. .-.....|++||-... .+-.....+++......-...++...|.-
T Consensus 498 ni~~-g~tdcglpm~wa~en----nlk~dvfii~tdndt~ageihp~~aik~yrea~~i~dakliv~amq 562 (598)
T KOG4465|consen 498 NIDA-GGTDCGLPMIWAQEN----NLKADVFIIFTDNDTFAGEIHPAEAIKEYREAMDIHDAKLIVCAMQ 562 (598)
T ss_pred cCCC-CCCccCCceeehhhc----CCCccEEEEEecCcccccccCHHHHHHHHHHhcCCCcceEEEEEee
Confidence 7766 888887777666442 2334577899998764 33334455666554433333566665553
No 93
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=2.2 Score=41.82 Aligned_cols=138 Identities=21% Similarity=0.251 Sum_probs=92.0
Q ss_pred ceEEEEEcCCCCCC-C----ChHHHHHHHHHHHHHhc---CCCCcEEEEEeCCc-eEEeeccccccCHhHHHHHHHHHhc
Q 004469 326 KDVVFLVDVSGSMQ-G----VLLEQTKNALSASLSKL---NPQDSFNIIAFNGE-THLFSSSMKLASQGTIINATQWLSS 396 (751)
Q Consensus 326 ~~vvfviD~SgSM~-g----~~i~~aK~al~~~L~~L---~~~d~f~Ii~F~~~-~~~~~~~~~~~t~~~i~~a~~~I~~ 396 (751)
...+++||.|--|. | .+++.-|+++..+++.- .|...++++.-... ...+... ....-..+.++..
T Consensus 4 EatvvliDNse~s~NgDy~ptRFeAQkd~ve~if~~K~ndnpEntiGli~~~~a~p~vlsT~-----T~~~gkilt~lhd 78 (243)
T COG5148 4 EATVVLIDNSEASQNGDYLPTRFEAQKDAVESIFSKKFNDNPENTIGLIPLVQAQPNVLSTP-----TKQRGKILTFLHD 78 (243)
T ss_pred ceEEEEEeChhhhhcCCCCcHHHHHHHHHHHHHHHHHhcCCccceeeeeecccCCcchhccc-----hhhhhHHHHHhcc
Confidence 45789999986665 3 47899999998887543 35678888887654 2333221 1234456777888
Q ss_pred CCCCCCCchHHHHHHHHHHhhcCCCC---ccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHH
Q 004469 397 LVAGGGTNILLPLKQAIKLLSDTSES---IPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFL 472 (751)
Q Consensus 397 l~a~GgT~l~~aL~~A~~~l~~~~~~---~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL 472 (751)
++-.||.++..+|+.|.-.++...+. .+.|.|+-.-...++.+++..++...++ ++-|-.+-+|...|...|
T Consensus 79 ~~~~g~a~~~~~lqiaql~lkhR~nk~q~qriVaFvgSpi~esedeLirlak~lkkn----nVAidii~fGE~~n~~~l 153 (243)
T COG5148 79 IRLHGGADIMRCLQIAQLILKHRDNKGQRQRIVAFVGSPIQESEDELIRLAKQLKKN----NVAIDIIFFGEAANMAGL 153 (243)
T ss_pred ccccCcchHHHHHHHHHHHHhcccCCccceEEEEEecCcccccHHHHHHHHHHHHhc----CeeEEEEehhhhhhhhHH
Confidence 88889999999999888777654322 3455555444456777777776665443 356666777776565443
No 94
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=93.72 E-value=0.68 Score=47.45 Aligned_cols=110 Identities=19% Similarity=0.295 Sum_probs=71.3
Q ss_pred CCCceEEEEEcCCCCCCCChHHHHHH-HHHHHHHhcC-------------CCCcEEEEEeCCceEEeecccc--ccCHhH
Q 004469 323 VFRKDVVFLVDVSGSMQGVLLEQTKN-ALSASLSKLN-------------PQDSFNIIAFNGETHLFSSSMK--LASQGT 386 (751)
Q Consensus 323 ~~~~~vvfviD~SgSM~g~~i~~aK~-al~~~L~~L~-------------~~d~f~Ii~F~~~~~~~~~~~~--~~t~~~ 386 (751)
...+++|||||.+..|. .-|...|. -+.-+++.+. ....+++|.|++.... +.... ..--.+
T Consensus 11 ~~~~~vVfvvEgTAalg-py~~~Lkt~Yl~P~le~f~~g~~~e~~~~~~~~~t~y~LVvf~t~d~~-~~~~v~~~g~T~~ 88 (226)
T PF11265_consen 11 PPQAQVVFVVEGTAALG-PYWNTLKTNYLDPILEYFNGGPIAERDFGGDYSNTEYGLVVFNTADCY-PEPIVQRSGPTSS 88 (226)
T ss_pred CccceEEEEEecchhhh-hhHHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEEEEeccCCC-cccceeccCCcCC
Confidence 46799999999999995 45555554 3445555554 2356889999876321 11111 112246
Q ss_pred HHHHHHHHhcCCCC-CCC----chHHHHHHHHHHhhcC------CC---CccEEEEEecCCC
Q 004469 387 IINATQWLSSLVAG-GGT----NILLPLKQAIKLLSDT------SE---SIPLIFLITDGTV 434 (751)
Q Consensus 387 i~~a~~~I~~l~a~-GgT----~l~~aL~~A~~~l~~~------~~---~~~~IiLlTDG~~ 434 (751)
....++|++++.-. ||. .+.++|..|++++... .+ ..++.||++--.+
T Consensus 89 ~~~fl~~L~~I~f~GGG~e~~a~iaEGLa~AL~~fd~~~~~r~~~~~~~~~khcILI~nSpP 150 (226)
T PF11265_consen 89 PQKFLQWLDAIQFSGGGFESCAAIAEGLAEALQCFDDFKQMRQQQQQTDVQKHCILICNSPP 150 (226)
T ss_pred HHHHHHHHHccCcCCCCcccchhHHHHHHHHHHHhcchhhhccccCcccccceEEEEeCCCC
Confidence 77889999987765 332 5788999999888631 11 2478899887765
No 95
>COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]
Probab=92.57 E-value=0.97 Score=51.17 Aligned_cols=104 Identities=21% Similarity=0.293 Sum_probs=71.1
Q ss_pred CceEEEEEcCCCCCCC-----ChHHHHHHHHHH-HHHhcCCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCC
Q 004469 325 RKDVVFLVDVSGSMQG-----VLLEQTKNALSA-SLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV 398 (751)
Q Consensus 325 ~~~vvfviD~SgSM~g-----~~i~~aK~al~~-~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~ 398 (751)
..++++++|.|.||.. .+++.+..++.. ....+..+|++++..|++....+.+. ....+.+...++.+....
T Consensus 224 ~~~v~l~lD~~~~m~~~~~~~~~~e~av~~a~~la~~~l~~gd~vg~~~~~~~~~~~~~p--~~G~~~l~~~l~~l~~~~ 301 (416)
T COG1721 224 GRTVVLVLDASRSMLFGSGVASKFEEAVRAAASLAYAALKNGDRVGLLIFGGGGPKWIPP--SRGRRHLARILKALALLR 301 (416)
T ss_pred CceEEEEEeCCccccCCCCCccHHHHHHHHHHHHHHHHHhCCCeeEEEEECCCcceeeCC--CcchHHHHHHHHHhhccC
Confidence 6899999999999984 588888776554 45677789999999999876544332 246677778877787777
Q ss_pred CCCC-CchHHHHHHHHHHhhcCCCCccEEEEEecCCC
Q 004469 399 AGGG-TNILLPLKQAIKLLSDTSESIPLIFLITDGTV 434 (751)
Q Consensus 399 a~Gg-T~l~~aL~~A~~~l~~~~~~~~~IiLlTDG~~ 434 (751)
..+. |+...+... ...+ +...+.++++||=..
T Consensus 302 ~~~~~~~~~~~~~~-~~~l---~~~~~~~~~~~~l~~ 334 (416)
T COG1721 302 PAPEETDYIRRVSK-LDFL---PPRRPLVILITDLAR 334 (416)
T ss_pred CCCcchhHHHHhhh-hhcc---CcccceEEEeehhhc
Confidence 7644 454444322 2222 233446777777664
No 96
>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.02 E-value=13 Score=43.59 Aligned_cols=49 Identities=29% Similarity=0.333 Sum_probs=43.3
Q ss_pred CCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCceEE
Q 004469 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHL 374 (751)
Q Consensus 324 ~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~ 374 (751)
.|--++||||+- |..+.++..|++|...++.|+++..+++|+||..+++
T Consensus 120 ~ppvf~fVvDtc--~~eeeL~~LkssL~~~l~lLP~~alvGlItfg~~v~v 168 (745)
T KOG1986|consen 120 SPPVFVFVVDTC--MDEEELQALKSSLKQSLSLLPENALVGLITFGTMVQV 168 (745)
T ss_pred CCceEEEEEeec--cChHHHHHHHHHHHHHHhhCCCcceEEEEEecceEEE
Confidence 466689999985 5568899999999999999999999999999998764
No 97
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=85.08 E-value=41 Score=34.26 Aligned_cols=144 Identities=13% Similarity=0.125 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHH-hc--CCCCcEEEEE-eCCceEEeeccccc---------------------cCHhHHHHHHHHHhcC
Q 004469 343 LEQTKNALSASLS-KL--NPQDSFNIIA-FNGETHLFSSSMKL---------------------ASQGTIINATQWLSSL 397 (751)
Q Consensus 343 i~~aK~al~~~L~-~L--~~~d~f~Ii~-F~~~~~~~~~~~~~---------------------~t~~~i~~a~~~I~~l 397 (751)
....-+++..+|. .| ..+.|+.|++ ++...+.+.|+..+ +++..+.+..+.++.-
T Consensus 43 ~~kvl~di~VFLNAhlaf~~~NrVaVva~~s~~~~yLypss~s~~k~se~e~tr~sd~yrrfr~vde~~i~eiyrl~e~~ 122 (296)
T COG5242 43 RDKVLNDIVVFLNAHLAFSRNNRVAVVAGYSQGKTYLYPSSESALKASESENTRNSDMYRRFRNVDETDITEIYRLIEHP 122 (296)
T ss_pred HHHHHHHHHHHHHHHHhhccCCeEEEEEeccCceEEeccCcchhhhhhcccCccchhhhhhhcccchHHHHHHHHHHhCc
Confidence 3444455555543 23 3567888776 45555544443322 2223444444445432
Q ss_pred CCC-CCCchHHHHHHHHHHhhcCCCC---ccEEEEEec-CCCCChhhHHHHHHHH--hhccCCCCCeEEEEEecCCCCHH
Q 004469 398 VAG-GGTNILLPLKQAIKLLSDTSES---IPLIFLITD-GTVGDERGICNEIKSY--LTNTRSISPRICTFGVGLYCNHY 470 (751)
Q Consensus 398 ~a~-GgT~l~~aL~~A~~~l~~~~~~---~~~IiLlTD-G~~~~~~~i~~~v~~~--~~~~~~~~~rIft~GiG~~~n~~ 470 (751)
... --+++..||..++......+.. ..+|+++|= |. +...+++.-. +=.+...+++|..+.|+.+ ..
T Consensus 123 ~k~sqr~~v~gams~glay~n~~~~e~slkSriliftlsG~----d~~~qYip~mnCiF~Aqk~~ipI~v~~i~g~--s~ 196 (296)
T COG5242 123 HKNSQRYDVGGAMSLGLAYCNHRDEETSLKSRILIFTLSGR----DRKDQYIPYMNCIFAAQKFGIPISVFSIFGN--SK 196 (296)
T ss_pred ccccceeehhhhhhhhHHHHhhhcccccccceEEEEEecCc----hhhhhhchhhhheeehhhcCCceEEEEecCc--cH
Confidence 222 4578888888888776543221 235555554 52 1222222111 1112234678888888775 67
Q ss_pred HHHHHHHhCCCEEEEeCCCccH
Q 004469 471 FLQILAQIGRGYYDSAYDPGSV 492 (751)
Q Consensus 471 lL~~LA~~ggG~~~~i~~~~~l 492 (751)
+|.+-+.++||.|..+.+.+.+
T Consensus 197 fl~Q~~daTgG~Yl~ve~~eGl 218 (296)
T COG5242 197 FLLQCCDATGGDYLTVEDTEGL 218 (296)
T ss_pred HHHHHhhccCCeeEeecCchhH
Confidence 8999999999999999887755
No 98
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]. The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. Integrins are important therapeutic targets in conditions such as atherosclerosis, thrombosis, cancer and asthma []. At the N terminus of the beta subunit is a cysteine-containing domain reminiscent of that found in presenillins and semaphorins, which has hence been termed the PSI domain. C-terminal to the PSI domain is an A-domain, which has been predicted to adopt a Rossmann fold similar to that of the alpha subunit, but with additional loops between the second and third beta strands []. The murine gene Pactolus shares significant similarity with the beta subunit [], but lacks either one or both of the inserted loops. The C-terminal portion of the beta subunit extracellular domain contains an internally disulphide-bonded cysteine-rich region, while the intracellular tail contains putative sites of interaction with a variety of intracellular signalling and cytoskeletal proteins, such as focal adhesion kinase and alpha-actinin respectively []. Integrin cytoplasmic domains are normally less than 50 amino acids in length, with the beta-subunit sequences exhibiting greater homology to each other than the alpha-subunit sequences. This is consistent with current evidence that the beta subunit is the principal site for binding of cytoskeletal and signalling molecules, whereas the alpha subunit has a regulatory role. The first 20 amino acids of the beta-subunit cytoplasmic domain are also alpha helical, but the final 25 residues are disordered and, apart from a turn that follows a conserved NPxY motif, appear to lack defined structure, suggesting that this is adopted on effector binding. The two membrane-proximal helices mediate the link between the subunits via a series of hydrophobic and electrostatic contacts. This entry represents the N-terminal portion of the extracellular region of integrin beta subunits.; GO: 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion; PDB: 3VI4_B 3VI3_B 2VDQ_B 3IJE_B 1M1X_B 2VDR_B 3NIF_B 3NID_D 1TYE_F 2Q6W_F ....
Probab=84.49 E-value=2 Score=48.71 Aligned_cols=188 Identities=18% Similarity=0.182 Sum_probs=97.9
Q ss_pred eEEEEEeCCCCCCCCCCCceEEEEEcCCCCCCCChHHHHH---HHHHHHHHhcCCCCcEEEEEeCCceE-Eee-------
Q 004469 308 IFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTK---NALSASLSKLNPQDSFNIIAFNGETH-LFS------- 376 (751)
Q Consensus 308 ~f~l~l~P~~~~~~~~~~~~vvfviD~SgSM~g~~i~~aK---~al~~~L~~L~~~d~f~Ii~F~~~~~-~~~------- 376 (751)
.|.+.+.|.. -.|.|+.+|+|.|+||.. .++..| ..|..-++.+..+-|+++=+|-+... .|.
T Consensus 90 ~f~v~~~~a~-----~yPvDLYyLmDlS~Sm~d-dl~~l~~lg~~l~~~~~~it~~~~~GfGsfvdK~~~P~~~~~p~~l 163 (426)
T PF00362_consen 90 TFNVTVRPAE-----DYPVDLYYLMDLSYSMKD-DLENLKSLGQDLAEEMRNITSNFRLGFGSFVDKPVMPFVSTTPEKL 163 (426)
T ss_dssp EEEEEEEBSS-----S--EEEEEEEE-SGGGHH-HHHHHCCCCHHHHHHHHTT-SSEEEEEEEESSSSSTTTST-SSHCH
T ss_pred EEEEEEeecc-----ccceeEEEEeechhhhhh-hHHHHHHHHHHHHHHHHhcCccceEechhhcccccCCcccCChhhh
Confidence 4666666543 368999999999999975 344444 34556677777788888888876632 111
Q ss_pred --cc---------------ccccCHhHHHHHHHHHhcCCCCCCCch----HHHHHHHH---HHhhcCCCCccEEEEEecC
Q 004469 377 --SS---------------MKLASQGTIINATQWLSSLVAGGGTNI----LLPLKQAI---KLLSDTSESIPLIFLITDG 432 (751)
Q Consensus 377 --~~---------------~~~~t~~~i~~a~~~I~~l~a~GgT~l----~~aL~~A~---~~l~~~~~~~~~IiLlTDG 432 (751)
|. ..+.+ ++..+..+.|++..-.|+-+- ..||-.|. +...=++...+.||+.||+
T Consensus 164 ~~pc~~~~~~c~~~~~f~~~l~Lt-~~~~~F~~~v~~~~is~n~D~PEgg~dal~Qa~vC~~~igWr~~a~~llv~~TD~ 242 (426)
T PF00362_consen 164 KNPCPSKNPNCQPPFSFRHVLSLT-DDITEFNEEVNKQKISGNLDAPEGGLDALMQAAVCQEEIGWRNEARRLLVFSTDA 242 (426)
T ss_dssp HSTSCCTTS--B---SEEEEEEEE-S-HHHHHHHHHTS--B--SSSSBSHHHHHHHHHH-HHHHT--STSEEEEEEEESS
T ss_pred cCcccccCCCCCCCeeeEEeeccc-chHHHHHHhhhhccccCCCCCCccccchheeeeecccccCcccCceEEEEEEcCC
Confidence 00 00011 356666666775443332221 22333322 1111023567789999998
Q ss_pred CCC--------------C------hh-----------hHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHHhCCC
Q 004469 433 TVG--------------D------ER-----------GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRG 481 (751)
Q Consensus 433 ~~~--------------~------~~-----------~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~~ggG 481 (751)
... + .. ..+..+.+.+.+.+ -..||++ ... .....+.|+..=.|
T Consensus 243 ~fH~agDg~l~gi~~pnd~~Chl~~~~~y~~~~~~DYPSv~ql~~~l~e~~--i~~IFAV--t~~-~~~~Y~~L~~~i~~ 317 (426)
T PF00362_consen 243 GFHFAGDGKLAGIVKPNDGKCHLDDNGMYTASTEQDYPSVGQLVRKLSENN--INPIFAV--TKD-VYSIYEELSNLIPG 317 (426)
T ss_dssp -B--TTGGGGGT--S---SS--BSTTSBBGGGGCS----HHHHHHHHHHTT--EEEEEEE--EGG-GHHHHHHHHHHSTT
T ss_pred ccccccccccceeeecCCCceEECCCCcccccccccCCCHHHHHHHHHHcC--CEEEEEE--chh-hhhHHHHHhhcCCC
Confidence 631 0 00 11344555554322 1356666 332 23466778776666
Q ss_pred EEEE-e-CCCccHHHHHHHHHHHhccce
Q 004469 482 YYDS-A-YDPGSVDYRIRRFFTAASSVF 507 (751)
Q Consensus 482 ~~~~-i-~~~~~l~~~l~~~l~~~~~p~ 507 (751)
...- . .+.+.+-+.+.+.+.++.+.+
T Consensus 318 s~vg~L~~dSsNIv~LI~~aY~~i~s~V 345 (426)
T PF00362_consen 318 SSVGELSSDSSNIVQLIKEAYNKISSKV 345 (426)
T ss_dssp EEEEEESTTSHTHHHHHHHHHHHHCTEE
T ss_pred ceecccccCchhHHHHHHHHHHHHhheE
Confidence 5543 3 334568788888888887643
No 99
>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair]
Probab=77.46 E-value=63 Score=33.95 Aligned_cols=165 Identities=16% Similarity=0.125 Sum_probs=87.0
Q ss_pred CCceEEEEEcCCC---CCC-----CChHHHHHHHHHHHHH-hc--CCCCcEEEEEeCCceEE-eeccc------------
Q 004469 324 FRKDVVFLVDVSG---SMQ-----GVLLEQTKNALSASLS-KL--NPQDSFNIIAFNGETHL-FSSSM------------ 379 (751)
Q Consensus 324 ~~~~vvfviD~Sg---SM~-----g~~i~~aK~al~~~L~-~L--~~~d~f~Ii~F~~~~~~-~~~~~------------ 379 (751)
.+.=++++||.+. -|. ...+...-+|+..++. .| ..+.++.|++..++... +.++.
T Consensus 22 ~~slL~vlId~~p~~Wg~~as~~~~~ti~kvl~aivVFlNAHL~~~~~NrvaViA~~~q~~~~lyp~st~~e~~n~~~~~ 101 (314)
T KOG2487|consen 22 NPSLLVVLIDANPCSWGMLASAENWETISKVLNAIVVFLNAHLAFSRNNRVAVIASHSQVDNYLYPSSTRCEDRNASELD 101 (314)
T ss_pred CceeEEEEEecCcchhhhhhhhcCceeHHHHHHHHHHHHHHHHhhccCCcEEEEEecccccceeccccccCCccCccccC
Confidence 3556788899887 221 1245556666666553 33 35779999998766421 11110
Q ss_pred ------------cccCHhHHHHHHHHHhc-CCCC-C-CCchHHHHHHHHHHhhcC---C---CCccEEEEEecCCCCChh
Q 004469 380 ------------KLASQGTIINATQWLSS-LVAG-G-GTNILLPLKQAIKLLSDT---S---ESIPLIFLITDGTVGDER 438 (751)
Q Consensus 380 ------------~~~t~~~i~~a~~~I~~-l~a~-G-gT~l~~aL~~A~~~l~~~---~---~~~~~IiLlTDG~~~~~~ 438 (751)
..+++.-+++..+.++. ...+ | -|-+..|+..++...... . .-..+|+++|=+.....
T Consensus 102 ~t~~~~~~y~~~~~~d~tiv~ei~~lm~~~~~~~~~~rt~lagals~~L~yi~~~~ke~~~~~lkSRilV~t~t~d~~~- 180 (314)
T KOG2487|consen 102 PTRLVLFDYSEFRTVDDTIVEEIYRLMEHPDKYDVGDRTVLAGALSDALGYINRLHKEEASEKLKSRILVFTLTRDRAL- 180 (314)
T ss_pred chhhhcchhhhhcccchHHHHHHHHHHhCccccccccceeeccchhhccchHhhhhhhhhhhhhhceEEEEEechHHHh-
Confidence 01111112222222221 1111 1 455555555555433211 1 12346777776543211
Q ss_pred hHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHHhCCCEEEEeCCCccH
Q 004469 439 GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSV 492 (751)
Q Consensus 439 ~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~~ggG~~~~i~~~~~l 492 (751)
+-+.++.--. .+...+++|-.+.+|++ ..+|++-+.++||.|..+..++.+
T Consensus 181 qyi~~MNciF-aAqKq~I~Idv~~l~~~--s~~LqQa~D~TGG~YL~v~~~~gL 231 (314)
T KOG2487|consen 181 QYIPYMNCIF-AAQKQNIPIDVVSLGGD--SGFLQQACDITGGDYLHVEKPDGL 231 (314)
T ss_pred hhhhHHHHHH-HHHhcCceeEEEEecCC--chHHHHHHhhcCCeeEecCCcchH
Confidence 1111111111 11234588888989886 789999999999999998876644
No 100
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=76.62 E-value=34 Score=44.91 Aligned_cols=120 Identities=19% Similarity=0.211 Sum_probs=74.8
Q ss_pred ceEEEEEcCCCCCCCCh-HHHHHHHHH---HHHHhcCCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCCC-
Q 004469 326 KDVVFLVDVSGSMQGVL-LEQTKNALS---ASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG- 400 (751)
Q Consensus 326 ~~vvfviD~SgSM~g~~-i~~aK~al~---~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a~- 400 (751)
-.|++-+|-|-||+-.+ -..|-+.+. ..|..|..+ .++|+-||.+.+.+.+.-.+.+.++-.++..|. .-.
T Consensus 4393 yqvmisiddsksmses~~~~la~etl~lvtkals~le~g-~iav~kfge~~~~lh~fdkqfs~esg~~~f~~f---~feq 4468 (4600)
T COG5271 4393 YQVMISIDDSKSMSESGSTVLALETLALVTKALSLLEVG-QIAVMKFGEQPELLHPFDKQFSSESGVQMFSHF---TFEQ 4468 (4600)
T ss_pred eEEEEEecccccccccCceeeehHHHHHHHHHHHHHhhc-cEEEEecCCChhhhCchhhhhcchHHHHHHHhh---chhc
Confidence 46888999999998431 122333333 334455444 789999999987766544555555544444443 333
Q ss_pred CCCchHHHHHHHHHHhhcC----CCCccEE-EEEecCCCCChhhHHHHHHHHhh
Q 004469 401 GGTNILLPLKQAIKLLSDT----SESIPLI-FLITDGTVGDERGICNEIKSYLT 449 (751)
Q Consensus 401 GgT~l~~aL~~A~~~l~~~----~~~~~~I-iLlTDG~~~~~~~i~~~v~~~~~ 449 (751)
..||..+-..+.++.+... ....+++ |+++||.-.+...|...++++-.
T Consensus 4469 s~tnv~~l~~~s~k~f~~a~t~~h~d~~qleiiisdgicedhdsi~kllrra~e 4522 (4600)
T COG5271 4469 SNTNVLALADASMKCFNYANTASHHDIRQLEIIISDGICEDHDSIRKLLRRAQE 4522 (4600)
T ss_pred ccccHHHHHHHHHHHHHHhhhhcccchheeEEEeecCcccchHHHHHHHHHhhh
Confidence 6788776555555544321 2334444 89999998888777777776643
No 101
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=74.50 E-value=1.1 Score=33.92 Aligned_cols=8 Identities=38% Similarity=1.215 Sum_probs=4.3
Q ss_pred cccccccc
Q 004469 707 RICCRCFI 714 (751)
Q Consensus 707 ~~~~~~~~ 714 (751)
||||-||.
T Consensus 28 cccc~cc~ 35 (56)
T TIGR03602 28 CCCCCCCF 35 (56)
T ss_pred EEeccEEE
Confidence 55555554
No 102
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=66.24 E-value=21 Score=42.55 Aligned_cols=61 Identities=23% Similarity=0.288 Sum_probs=41.4
Q ss_pred cceEEEEEeCCCCCCCCCCCceEEEEEcCCCCCCCC--hHHHHHHHHHHHHHhcCCCCcEEEEEeCCc
Q 004469 306 RQIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGV--LLEQTKNALSASLSKLNPQDSFNIIAFNGE 371 (751)
Q Consensus 306 ~~~f~l~l~P~~~~~~~~~~~~vvfviD~SgSM~g~--~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~ 371 (751)
...|.+.+.+.. --|.|++.|+|.|-||..+ ++...-..|..-++.|..+-|++.=+|=+.
T Consensus 118 ~~~f~l~~r~a~-----~yPVDLYyLMDlS~SM~DDl~~l~~LG~~L~~~m~~lT~nfrlGFGSFVDK 180 (783)
T KOG1226|consen 118 EQTFQLKVRQAE-----DYPVDLYYLMDLSYSMKDDLENLKSLGTDLAREMRKLTSNFRLGFGSFVDK 180 (783)
T ss_pred ceeEEEEEeecc-----CCCeeEEEEeecchhhhhhHHHHHHHHHHHHHHHHHHhccCCccccchhcc
Confidence 345666665443 3689999999999999864 444444556666777777767666565444
No 103
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=62.73 E-value=52 Score=33.92 Aligned_cols=97 Identities=21% Similarity=0.168 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhhcCCCCccEEEEEecCCCC-ChhhHHHHHHHHhhccCCCCCeEEEEEecCCCC--------HHHHHHHH
Q 004469 406 LLPLKQAIKLLSDTSESIPLIFLITDGTVG-DERGICNEIKSYLTNTRSISPRICTFGVGLYCN--------HYFLQILA 476 (751)
Q Consensus 406 ~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~-~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n--------~~lL~~LA 476 (751)
.++|..+++......+..-.+=|+|||.+. ..+.+...++-. ...+-..+.||+|.=|.++. ..+.+.|+
T Consensus 13 n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a-~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~l~~~l~ 91 (223)
T PF06415_consen 13 NPVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLA-KKQGVKKVYVHAFTDGRDTPPKSALKYLEELEEKLA 91 (223)
T ss_dssp SHHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHH-HHTT-SEEEEEEEE-SSSS-TTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHH-HHcCCCEEEEEEecCCCCCCcchHHHHHHHHHHHHH
Confidence 357777888776655555577899999985 444554444433 33333447789998887765 24556666
Q ss_pred HhCCC-------EEEEeCCCccHHHHHHHHHHHhc
Q 004469 477 QIGRG-------YYDSAYDPGSVDYRIRRFFTAAS 504 (751)
Q Consensus 477 ~~ggG-------~~~~i~~~~~l~~~l~~~l~~~~ 504 (751)
+.+.| +|+......++ ++.++.++.+.
T Consensus 92 ~~~~g~IAsv~GRyyaMDRD~rW-eRv~~Ay~alv 125 (223)
T PF06415_consen 92 EIGIGRIASVSGRYYAMDRDKRW-ERVEKAYDALV 125 (223)
T ss_dssp HHTCTEEEEEEECCCCT--TS-H-HHHHHHHHHHC
T ss_pred hhCCceEEEEeceeeeeccccCH-HHHHHHHHHHh
Confidence 77664 45544444555 45566666665
No 104
>KOG2326 consensus DNA-binding subunit of a DNA-dependent protein kinase (Ku80 autoantigen) [Replication, recombination and repair]
Probab=58.22 E-value=1.7e+02 Score=34.31 Aligned_cols=134 Identities=17% Similarity=0.149 Sum_probs=70.7
Q ss_pred ceEEEEEcCCCCCCC------ChHHHHHHHHHHHHHh--c--CCCCcEEEEEeCCceEE--------eec--cccccCHh
Q 004469 326 KDVVFLVDVSGSMQG------VLLEQTKNALSASLSK--L--NPQDSFNIIAFNGETHL--------FSS--SMKLASQG 385 (751)
Q Consensus 326 ~~vvfviD~SgSM~g------~~i~~aK~al~~~L~~--L--~~~d~f~Ii~F~~~~~~--------~~~--~~~~~t~~ 385 (751)
...+|++|.+.||.- ..+++|+.++...+.+ + +..|.|+++.|+-+... |.. ...+....
T Consensus 5 e~ttfilDvG~~Ms~~~~~~~S~fE~a~~y~~~~lsrK~fa~rktD~is~vlyncD~ten~legg~~fqnisvl~p~~tp 84 (669)
T KOG2326|consen 5 ESTTFILDVGPSMSKNNETGKSNFEKAMAYLEYTLSRKSFASRKTDWISCVLYNCDVTENSLEGGNVFQNISVLAPVTTP 84 (669)
T ss_pred cceEEEEecCccccccCCCccccHHHHHHHHHHHHHHHHhhccCCceEEEEEecCCCccCccccccccceeEEeecccch
Confidence 456788899999974 2689999998877632 2 25789999999876431 110 01111111
Q ss_pred HHHHHHHHHh-cCCCC-CCCchHHHHHHHHHHhhcC-----CCCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeE
Q 004469 386 TIINATQWLS-SLVAG-GGTNILLPLKQAIKLLSDT-----SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRI 458 (751)
Q Consensus 386 ~i~~a~~~I~-~l~a~-GgT~l~~aL~~A~~~l~~~-----~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rI 458 (751)
........+. .++.+ --.++..||-....++.+. ....+.|++.+++..+....+. +...+.. ..+.+
T Consensus 85 af~~l~k~~~~~~qqns~q~Df~gal~vs~dL~~qhe~~~k~~~kr~Il~~~~l~~dfsd~~~--ive~l~~---~didL 159 (669)
T KOG2326|consen 85 AFIGLIKRLKQYCQQNSHQSDFEGALSVSQDLLVQHEDIKKQFQKRKILKQIVLFTDFSDDLF--IVEDLTD---EDIDL 159 (669)
T ss_pred hhHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhccchhhceEEEEeecccccchhhHH--HHHHHhh---cCcce
Confidence 1222233333 22222 2234566666555544321 2234566666677655443333 2222221 23567
Q ss_pred EEEEec
Q 004469 459 CTFGVG 464 (751)
Q Consensus 459 ft~GiG 464 (751)
-++|+.
T Consensus 160 ~~~gld 165 (669)
T KOG2326|consen 160 LTEGLD 165 (669)
T ss_pred eEeecc
Confidence 777764
No 105
>PF06668 ITI_HC_C: Inter-alpha-trypsin inhibitor heavy chain C-terminus; InterPro: IPR010600 This entry represents the C-terminal region of inter-alpha-trypsin inhibitor heavy chains. Inter-alpha-trypsin inhibitors are glycoproteins with a high inhibitory activity against trypsin, built up from different combinations of four polypeptides: bikunin and the three heavy chains that belong to this family (HC1, HC2, HC3). The heavy chains do not have any protease inhibitory properties but have the capacity to interact in vitro and in vivo with hyaluronic acid, which promotes the stability of the extra-cellular matrix. This domain is associated with the VWA domain IPR002035 from INTERPRO.; GO: 0004867 serine-type endopeptidase inhibitor activity, 0030212 hyaluronan metabolic process
Probab=53.50 E-value=14 Score=36.98 Aligned_cols=63 Identities=21% Similarity=0.211 Sum_probs=50.6
Q ss_pred ceEEEEeC-CCCCCChhhhhhhhccccccccccccCccceeccccccCCCCcccccccCCCCCCCCCCcchh
Q 004469 620 TCMILFPS-GSKTSEPVFLKELLNKVDLLKRVDSTSQKNILLGSLGVGFGNLKATAENVPPGTEETKSSDAT 690 (751)
Q Consensus 620 TS~vave~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (751)
|-+|++-. +++++-+.+..+ +|..+.++-++-+.|.||.++-+....+.+.+||. |+++||++
T Consensus 90 ~F~Il~Hr~~~~~~~~~d~LG-------fYi~ds~~lS~~vhGLLGQF~~~~~~~v~~~~~g~-d~~k~~a~ 153 (188)
T PF06668_consen 90 TFVILLHRVWKKHPYQRDFLG-------FYILDSHGLSPSVHGLLGQFYHEPDFEVSDPRPGS-DPEKPEAT 153 (188)
T ss_pred EEEEEEEeecCCCCCCCCeeE-------EEecCCCCCCCcccccccCccCCCceEEecCCCCC-CCCCcceE
Confidence 55555564 888887777766 46777888889999999999999999999999999 66667663
No 106
>PF04597 Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (2.4.1.119 from EC). OST catalyses the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are thought to be responsible for OST catalytic activity []. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function []. Most family members are predicted to have a transmembrane helix at the C terminus of this region.; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0006486 protein glycosylation, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=52.27 E-value=1.1e+02 Score=34.87 Aligned_cols=84 Identities=11% Similarity=0.160 Sum_probs=53.1
Q ss_pred eeeEEEEEEEEEecccCCCceeEEEEEeecCC--CceEEEEEEEECCEEEEEEE-EeehHHHHHHHhccccCCccceecC
Q 004469 98 DTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGE--RGSLLGVEVEIDGRSYQSKL-ISLDDAEYKENVGKSKGDGRYLKGQ 174 (751)
Q Consensus 98 ~~A~vtv~q~f~N~~~~~~~~~E~~y~FPLp~--~a~V~gf~~~i~gk~i~g~V-~eke~A~~~~~~a~~~~d~alL~~n 174 (751)
..+++++..+..| .++.+ ...|.|.||. ...+..+++..+++...... +++.+.. .+. .-+
T Consensus 16 ~~vk~~~~i~i~N---~g~~p-~~~y~~~l~~~~~~~ls~~~a~~~~~~~~~~~~~~~~~~~-------~~~-----~~~ 79 (432)
T PF04597_consen 16 SYVKETIEITIKN---IGDEP-VSEYYFALPNDEADHLSYVSAKDKDKKKKLKVSKEITEVN-------SGS-----EIK 79 (432)
T ss_pred cEEEEEEEEEEEE---CCCCC-ceEEEEEECchhhccEEEEEEEECCCcccccccccccccc-------CCC-----Ccc
Confidence 3478888889998 46666 4566666665 45777788877765444333 1111100 000 012
Q ss_pred cEEEEec-CCCCCCEEEEEEEEEE
Q 004469 175 IYTLRIP-QVDGGSTLSIKVNWSQ 197 (751)
Q Consensus 175 ~F~~~Vg-nIppg~~v~I~I~Y~q 197 (751)
.|++.+. +|.||++++|+++|.-
T Consensus 80 ~~~i~L~~pl~~~~~~~l~v~~~~ 103 (432)
T PF04597_consen 80 YYEITLPKPLAPGEKVTLTVEYVL 103 (432)
T ss_pred eEEEECCCCCCCCCEEEEEEEEEe
Confidence 3888887 6889999999999983
No 107
>COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion]
Probab=48.68 E-value=42 Score=38.84 Aligned_cols=51 Identities=24% Similarity=0.352 Sum_probs=45.3
Q ss_pred CCCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCceEEe
Q 004469 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLF 375 (751)
Q Consensus 323 ~~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~ 375 (751)
..|.-+.||+|.-. .++.+...|+++...|..|+++.-+++|+|++..++.
T Consensus 120 ~~ppvf~fvvD~~~--D~e~l~~LkdslivslsllppeaLvglItygt~i~v~ 170 (755)
T COG5047 120 ILPPVFFFVVDACC--DEEELTALKDSLIVSLSLLPPEALVGLITYGTSIQVH 170 (755)
T ss_pred cCCceEEEEEEeec--CHHHHHHHHHHHHHHHhcCCccceeeEEEecceeEEE
Confidence 46788999999876 7889999999999999999999999999999987643
No 108
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=46.33 E-value=6.6 Score=45.47 Aligned_cols=7 Identities=43% Similarity=1.255 Sum_probs=0.0
Q ss_pred hhccccc
Q 004469 696 AASICCG 702 (751)
Q Consensus 696 ~~~~~~~ 702 (751)
-++||||
T Consensus 570 ~~TGCCG 576 (610)
T PF01601_consen 570 CMTGCCG 576 (610)
T ss_dssp -------
T ss_pred HhcCCcc
Confidence 4556665
No 109
>PRK05434 phosphoglyceromutase; Provisional
Probab=44.58 E-value=1.1e+02 Score=35.48 Aligned_cols=96 Identities=19% Similarity=0.168 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhcCCCCccEEEEEecCCCCC-hhhHHHHHHHHhhccCCCCCeEEEEEecCCCCH--------HHHHHHH
Q 004469 406 LLPLKQAIKLLSDTSESIPLIFLITDGTVGD-ERGICNEIKSYLTNTRSISPRICTFGVGLYCNH--------YFLQILA 476 (751)
Q Consensus 406 ~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~-~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~--------~lL~~LA 476 (751)
..+|..+++..+...+..-.+=|+|||.+.. .+.+...++.+ ...+-..++||+|.=|.++.. .|.+.|+
T Consensus 95 n~~~~~~~~~~~~~~~~lHl~GL~SdggVHsh~~hl~~l~~~a-~~~g~~~v~vH~~~DGRD~~p~s~~~~i~~l~~~~~ 173 (507)
T PRK05434 95 NPALLDAIDKAKKNGGALHLMGLLSDGGVHSHIDHLFALLELA-KEEGVKKVYVHAFLDGRDTPPKSALGYLEELEAKLA 173 (507)
T ss_pred CHHHHHHHHHHHhcCCeEEEEEeccCCCcccHHHHHHHHHHHH-HHcCCCEEEEEEecCCCCCCchhHHHHHHHHHHHHH
Confidence 4556666666554344445667899998854 44444444443 333334678888888876652 3344455
Q ss_pred HhCC-------CEEEEeCCCccHHHHHHHHHHHh
Q 004469 477 QIGR-------GYYDSAYDPGSVDYRIRRFFTAA 503 (751)
Q Consensus 477 ~~gg-------G~~~~i~~~~~l~~~l~~~l~~~ 503 (751)
+.+. |+|+......+++ ++++.++.+
T Consensus 174 ~~~~~~iasv~GRyyamDRd~rw~-rv~~a~~~~ 206 (507)
T PRK05434 174 ELGVGRIASVSGRYYAMDRDKRWD-RVEKAYDAL 206 (507)
T ss_pred HhCCeeEEEEeccccccccccchH-HHHHHHHHH
Confidence 5454 6777555444442 334443333
No 110
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=42.46 E-value=1.7e+02 Score=33.89 Aligned_cols=86 Identities=20% Similarity=0.153 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhcCCCCccEEEEEecCCCCC-hhhHHHHHHHHhhccCCCCCeEEEEEecCCCCH--------HHHHHHH
Q 004469 406 LLPLKQAIKLLSDTSESIPLIFLITDGTVGD-ERGICNEIKSYLTNTRSISPRICTFGVGLYCNH--------YFLQILA 476 (751)
Q Consensus 406 ~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~-~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~--------~lL~~LA 476 (751)
..+|..+++..+...+..-.+=|+|||.+.. .+.+...++-+ .+.+-..++||+|.=|.++.. .+.+.|+
T Consensus 91 n~~l~~~~~~~~~~~~~lHl~GL~SdGgVHsh~~hl~~l~~~a-~~~g~~~v~vH~~~DGRD~~p~s~~~~~~~l~~~~~ 169 (501)
T TIGR01307 91 NPALLGAIDRAKDNNGKLHLMGLVSDGGVHSHIDHLIALIELA-AERGIEKVVLHAFTDGRDTAPKSAESYLEQLQAFLK 169 (501)
T ss_pred CHHHHHHHHHHHhcCCceEEEEeccCCCCcchHHHHHHHHHHH-HHcCCCeEEEEEecCCCCCCchhHHHHHHHHHHHHH
Confidence 4455556665544344555677899999854 44555544443 333334678899888876542 2334444
Q ss_pred HhC-------CCEEEEeCCCccH
Q 004469 477 QIG-------RGYYDSAYDPGSV 492 (751)
Q Consensus 477 ~~g-------gG~~~~i~~~~~l 492 (751)
+.+ .|+|+......++
T Consensus 170 ~~~~~~iasv~GRyyaMDRd~rw 192 (501)
T TIGR01307 170 EIGNGRIATISGRYYAMDRDQRW 192 (501)
T ss_pred HhCCEEEEEEeCcceeecCccch
Confidence 433 3777766555554
No 111
>KOG2291 consensus Oligosaccharyltransferase, alpha subunit (ribophorin I) [Posttranslational modification, protein turnover, chaperones]
Probab=33.25 E-value=1.7e+02 Score=33.96 Aligned_cols=96 Identities=18% Similarity=0.184 Sum_probs=60.1
Q ss_pred eEEEEEEEEEeeeeEEEEEEEEEecccCCCce-eEEEEEeecCCCceEEEEEE-EECCEEEEEEEEeehHHHHHHHhccc
Q 004469 87 HGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQ-CDCTIAVPLGERGSLLGVEV-EIDGRSYQSKLISLDDAEYKENVGKS 164 (751)
Q Consensus 87 ~~v~~~V~~~~~~A~vtv~q~f~N~~~~~~~~-~E~~y~FPLp~~a~V~gf~~-~i~gk~i~g~V~eke~A~~~~~~a~~ 164 (751)
..++=+|+-.-.++.|+.+..+.| .++.+ -|-.|.||-+.++.+.-+.+ ..+|+.- +.+. ... +.
T Consensus 34 ~nv~RTIDlsS~ivK~tt~l~i~N---~g~ePatey~~a~~~~~~~~la~ls~~~~~g~~~-~~l~-~s~--------~~ 100 (602)
T KOG2291|consen 34 VNVERTIDLSSQIVKVTTELSIEN---IGSEPATEYLLAFEKELGASLAFLSVAFTEGKKK-TLLK-LSV--------NP 100 (602)
T ss_pred ccceEEEehhhhhhhheeEEEEEe---cCCCchheEEEeccCccccceeEEEEeeccCccc-cccc-ccc--------CC
Confidence 334444443334588899999999 45554 79999999999999999944 4555433 1111 110 00
Q ss_pred cCCccceecCcEEEEec-CCCCCCEEEEEEEEE
Q 004469 165 KGDGRYLKGQIYTLRIP-QVDGGSTLSIKVNWS 196 (751)
Q Consensus 165 ~~d~alL~~n~F~~~Vg-nIppg~~v~I~I~Y~ 196 (751)
.++.+. ...+|++.+. +|.||+++++.|.+.
T Consensus 101 ~~~~~~-~~~~y~v~lp~pl~pge~vTl~V~~~ 132 (602)
T KOG2291|consen 101 PKKDGA-SERVYTVTLPNPLSPGEKVTLIVEAV 132 (602)
T ss_pred cccCCC-ccceEEEeCCCCCCCCceEEEEEEee
Confidence 011111 1157888887 588999999988765
No 112
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=32.53 E-value=57 Score=39.07 Aligned_cols=12 Identities=33% Similarity=0.598 Sum_probs=6.4
Q ss_pred CCCcccCCCCCC
Q 004469 56 EPQIVDNPDVPS 67 (751)
Q Consensus 56 ~~~~~~~~~~~~ 67 (751)
.|++.+.|-.|.
T Consensus 563 lPg~aG~PPpPp 574 (1102)
T KOG1924|consen 563 LPGIAGGPPPPP 574 (1102)
T ss_pred CCcccCCCCccC
Confidence 356666555443
No 113
>PF01882 DUF58: Protein of unknown function DUF58; InterPro: IPR002881 This domain is found in a family of prokaryotic proteins that have no known function. Proteins belonging to this family include hypothetical proteins from eubacteria and archaebacteria. Some of these proteins also contain the Von Willebrand factor, type A domain (see IPR002035 from INTERPRO).
Probab=30.32 E-value=63 Score=27.42 Aligned_cols=40 Identities=20% Similarity=0.186 Sum_probs=28.8
Q ss_pred CceEEEEEcCCCCCCC-----ChHHHHHHHHHHHHHhc-CCCCcEE
Q 004469 325 RKDVVFLVDVSGSMQG-----VLLEQTKNALSASLSKL-NPQDSFN 364 (751)
Q Consensus 325 ~~~vvfviD~SgSM~g-----~~i~~aK~al~~~L~~L-~~~d~f~ 364 (751)
..++.+++|.+++|.. .+++.+..++..++..+ ..++.|+
T Consensus 40 ~~~~~i~ld~~~~~~~~~~~~~~~e~~l~~a~~l~~~~~~~g~~v~ 85 (86)
T PF01882_consen 40 SQPVWIVLDLSPSMYFGSNGRSKFERALSAAASLANQALRQGDPVG 85 (86)
T ss_pred CCcEEEEEECCCccccCcCCCCHHHHHHHHHHHHHHHHHhcCCccc
Confidence 4789999999999975 67777777776665444 3455543
No 114
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=27.72 E-value=5.5e+02 Score=29.14 Aligned_cols=48 Identities=10% Similarity=0.096 Sum_probs=24.6
Q ss_pred CCCEEEEeCCCccHHHHHHHHHHHhccceEeeEEEEeecCCCceeecC
Q 004469 479 GRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETSKHLNSLELFP 526 (751)
Q Consensus 479 ggG~~~~i~~~~~l~~~l~~~l~~~~~p~l~di~l~~~~~~~~~ev~p 526 (751)
..|...|-..-++..+.++.+....+.-.+-..-++.+.++.-+.+.|
T Consensus 288 v~G~~hFrv~~~~g~~I~~~lr~~~sG~~vP~~v~d~pgg~gK~pl~p 335 (417)
T TIGR03820 288 SEGLSHFRTPVGKGIEIIESLIGHTSGFAVPTYVVDAPGGGGKIPVMP 335 (417)
T ss_pred CCCcccccCcHHHHHHHHHHHHHhCCCCCceEEEEecCCCCCCEEecc
Confidence 345544444445555566666666655555555566544333333433
No 115
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=25.22 E-value=24 Score=41.12 Aligned_cols=12 Identities=42% Similarity=1.337 Sum_probs=0.0
Q ss_pred cchhhhhhhhhc
Q 004469 737 CFECFNCCFELC 748 (751)
Q Consensus 737 ~~~~~~~~~~~~ 748 (751)
|+||+.|||-.|
T Consensus 577 c~~C~~~~c~~c 588 (610)
T PF01601_consen 577 CCGCFGSCCGKC 588 (610)
T ss_dssp ------------
T ss_pred ccchhhchhccc
Confidence 335666655566
No 116
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=24.63 E-value=1.4e+02 Score=24.83 Aligned_cols=32 Identities=13% Similarity=0.384 Sum_probs=18.4
Q ss_pred ecCCCCCCEEEEEEEEEEeeeeccCeEEEEEE
Q 004469 180 IPQVDGGSTLSIKVNWSQKLTYEEGQFCLSVP 211 (751)
Q Consensus 180 VgnIppg~~v~I~I~Y~q~L~~~~g~~~~~lp 211 (751)
+..|+||+.+.+.++-.-+-....|.|.+.+.
T Consensus 43 ~~~l~pG~s~~~~~~V~vp~~a~~G~y~v~~~ 74 (78)
T PF10633_consen 43 VPSLPPGESVTVTFTVTVPADAAPGTYTVTVT 74 (78)
T ss_dssp E--B-TTSEEEEEEEEEE-TT--SEEEEEEEE
T ss_pred cccCCCCCEEEEEEEEECCCCCCCceEEEEEE
Confidence 34688898888887777666666777765443
No 117
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=22.85 E-value=1.3e+02 Score=29.22 Aligned_cols=44 Identities=25% Similarity=0.372 Sum_probs=37.7
Q ss_pred CceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 004469 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAF 368 (751)
Q Consensus 325 ~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F 368 (751)
++.-+||+|-.|+|.....+..++-+..+|.--.++|.+=|-.=
T Consensus 96 ~~~r~~VldF~Gdi~A~~v~~LReeisail~~a~~~DeV~~rLE 139 (155)
T PF08496_consen 96 PKPRLFVLDFKGDIKASEVESLREEISAILSVATPEDEVLVRLE 139 (155)
T ss_pred CCCeEEEEecCCCccHHHHHHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 45678999999999998899999999999999999988765443
No 118
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.76 E-value=1.3e+02 Score=28.77 Aligned_cols=31 Identities=19% Similarity=0.405 Sum_probs=25.9
Q ss_pred CceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcC
Q 004469 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN 358 (751)
Q Consensus 325 ~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~ 358 (751)
..-++||+|.+.| .+++.||+-|..+++.-.
T Consensus 85 tqglIFV~Dsa~~---dr~eeAr~ELh~ii~~~e 115 (180)
T KOG0071|consen 85 TQGLIFVVDSADR---DRIEEARNELHRIINDRE 115 (180)
T ss_pred CceEEEEEeccch---hhHHHHHHHHHHHhCCHh
Confidence 3679999998887 689999999999986533
No 119
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.03 E-value=3.4e+02 Score=27.07 Aligned_cols=43 Identities=21% Similarity=0.387 Sum_probs=31.0
Q ss_pred ceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCce
Q 004469 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGET 372 (751)
Q Consensus 326 ~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~ 372 (751)
.-+|||+|.+.- ++++.+|+-+..++..-. -...-++.|.+..
T Consensus 86 ~~lIfVvDS~Dr---~Ri~eak~eL~~~l~~~~-l~~~~llv~aNKq 128 (181)
T KOG0070|consen 86 QGLIFVVDSSDR---ERIEEAKEELHRMLAEPE-LRNAPLLVFANKQ 128 (181)
T ss_pred cEEEEEEeCCcH---HHHHHHHHHHHHHHcCcc-cCCceEEEEechh
Confidence 569999997654 488999999988887654 2345566676653
No 120
>KOG4513 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=20.66 E-value=1.2e+02 Score=33.35 Aligned_cols=46 Identities=17% Similarity=0.188 Sum_probs=28.1
Q ss_pred CCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCC
Q 004469 421 ESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLY 466 (751)
Q Consensus 421 ~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~ 466 (751)
+..-.+=|+|||-+...-.-+..+.+.++..+...+++|.++=|.+
T Consensus 123 g~lHlvGlvSDGGVHShidhl~allka~~erg~~ei~vH~~tDGRD 168 (531)
T KOG4513|consen 123 GTLHLVGLVSDGGVHSHIDHLQALLKALAERGAKEIRVHILTDGRD 168 (531)
T ss_pred CeEEEEEEecCCchhhhHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 3444566888888754433344445555555556677887776654
No 121
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=20.23 E-value=7.5e+02 Score=29.21 Aligned_cols=60 Identities=17% Similarity=0.108 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhcCCCCccEEEEEecCCCCC-hhhHHHHHHHHhhccCCCCCeEEEEEecCCCC
Q 004469 406 LLPLKQAIKLLSDTSESIPLIFLITDGTVGD-ERGICNEIKSYLTNTRSISPRICTFGVGLYCN 468 (751)
Q Consensus 406 ~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~-~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n 468 (751)
..+|..+++... .+..-.+=|+|||.+.. .+.+...++-+ ...+-..+.||+|.=|.++.
T Consensus 114 n~~l~~~~~~~~--~~~lHl~GL~SdGGVHSh~~Hl~al~~~a-~~~gv~~v~vH~f~DGRDt~ 174 (558)
T PLN02538 114 GEGFKYIKEAFA--TGTLHLIGLLSDGGVHSRLDQLQLLLKGA-AERGAKRIRVHVLTDGRDVP 174 (558)
T ss_pred CHHHHHHHHHhc--CCeeEEEEeccCCCcccHHHHHHHHHHHH-HHcCCCeEEEEEEcCCCCCC
Confidence 344555555442 34444667899998854 34454444443 33333467788888776654
Done!