Query 004469
Match_columns 751
No_of_seqs 340 out of 2213
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 02:06:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004469.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004469hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fx5_A VON willebrand factor t 99.9 6.8E-23 2.3E-27 230.9 24.7 190 323-516 75-270 (464)
2 1q0p_A Complement factor B; VO 99.8 4.6E-20 1.6E-24 187.2 16.1 179 324-503 14-219 (223)
3 1ijb_A VON willebrand factor; 99.8 4.3E-19 1.5E-23 178.2 21.9 174 324-504 12-196 (202)
4 3ibs_A Conserved hypothetical 99.8 1.4E-19 4.9E-24 183.2 18.0 175 322-504 8-213 (218)
5 4hqo_A Sporozoite surface prot 99.8 3.8E-19 1.3E-23 186.6 16.1 177 324-505 17-208 (266)
6 3zqk_A VON willebrand factor; 99.8 2E-18 6.7E-23 173.0 17.3 167 322-504 18-194 (199)
7 4hqf_A Thrombospondin-related 99.8 1.3E-18 4.5E-23 183.8 16.3 179 324-506 20-212 (281)
8 1shu_X Anthrax toxin receptor 99.8 3.9E-18 1.3E-22 167.5 17.0 172 324-502 5-180 (182)
9 1mf7_A Integrin alpha M; cell 99.8 6.8E-19 2.3E-23 175.2 11.3 175 324-505 4-191 (194)
10 2b2x_A Integrin alpha-1; compu 99.8 2.7E-18 9.1E-23 175.1 15.8 172 324-504 21-212 (223)
11 1n3y_A Integrin alpha-X; alpha 99.8 1.2E-18 4.2E-23 173.6 10.8 174 324-504 8-194 (198)
12 1pt6_A Integrin alpha-1; cell 99.8 4.3E-18 1.5E-22 172.2 14.4 173 324-505 6-198 (213)
13 1atz_A VON willebrand factor; 99.7 2.3E-17 7.7E-22 163.6 17.4 163 324-495 4-176 (189)
14 3n2n_F Anthrax toxin receptor 99.7 7.8E-18 2.7E-22 165.8 13.9 171 323-502 5-183 (185)
15 1v7p_C Integrin alpha-2; snake 99.7 2.7E-17 9.1E-22 164.7 17.6 171 325-504 6-196 (200)
16 1mjn_A Integrin alpha-L; rossm 99.7 1.8E-18 6.3E-23 170.3 7.0 166 325-502 2-178 (179)
17 2odp_A Complement C2; C3/C5 co 99.7 1E-17 3.6E-22 191.5 13.3 177 323-500 7-210 (509)
18 2xgg_A Microneme protein 2; A/ 99.7 4.1E-17 1.4E-21 160.4 15.0 146 324-474 16-170 (178)
19 2x31_A Magnesium-chelatase 60 99.7 6.6E-20 2.3E-24 181.7 -5.3 173 323-503 3-186 (189)
20 1rrk_A Complement factor B; BB 99.7 4.3E-17 1.5E-21 185.7 15.0 180 325-505 1-207 (497)
21 3hrz_D Complement factor B; se 99.7 4.5E-17 1.5E-21 194.6 15.5 187 323-510 241-454 (741)
22 3k6s_A Integrin alpha-X; cell 99.5 4.2E-15 1.5E-19 183.0 7.1 176 323-505 128-316 (1095)
23 4b4t_W RPN10, 26S proteasome r 99.5 4.5E-13 1.5E-17 138.9 16.7 156 327-491 5-179 (268)
24 2x5n_A SPRPN10, 26S proteasome 99.5 2.7E-12 9.2E-17 127.6 19.5 156 326-491 3-175 (192)
25 2ww8_A RRGA, cell WALL surface 99.3 4.1E-12 1.4E-16 152.5 13.9 114 322-435 221-391 (893)
26 1yvr_A RO autoantigen, 60-kDa 99.2 2.6E-11 8.7E-16 139.4 11.1 134 323-466 366-504 (538)
27 1jey_B KU80; double-strand DNA 99.0 7.4E-10 2.5E-14 127.9 12.3 153 326-487 8-228 (565)
28 2nvo_A RO sixty-related protei 99.0 1.3E-09 4.4E-14 124.9 10.6 151 323-483 360-534 (535)
29 3rag_A Uncharacterized protein 98.8 3.8E-09 1.3E-13 107.0 6.1 92 324-418 133-227 (242)
30 1jey_A KU70; double-strand DNA 98.6 2.1E-07 7E-12 108.3 14.3 136 326-466 36-208 (609)
31 1pcx_A Protein transport prote 98.3 0.00011 3.7E-09 87.9 27.6 298 312-614 174-571 (810)
32 2nut_A Protein transport prote 98.2 0.00046 1.6E-08 82.0 29.4 164 323-490 130-382 (769)
33 1m2v_B SEC24, protein transpor 98.1 0.00027 9.3E-09 85.1 25.8 298 312-614 290-687 (926)
34 1m2o_A SEC23, protein transpor 98.0 0.0019 6.6E-08 76.7 28.9 164 323-490 119-376 (768)
35 3eh1_A Protein transport prote 98.0 0.0015 5.2E-08 77.3 27.0 289 322-615 157-538 (751)
36 3rag_A Uncharacterized protein 98.0 2.4E-05 8.2E-10 79.2 10.0 79 421-504 8-91 (242)
37 3fcs_B Integrin beta-3; beta p 97.7 0.00026 8.8E-09 82.8 15.2 190 307-507 98-355 (690)
38 2iue_A Pactolus I-domain; memb 97.7 0.00019 6.4E-09 71.6 10.8 106 324-435 2-117 (212)
39 3efo_B SEC24 related gene fami 97.5 0.0089 3.1E-07 70.9 24.5 224 322-548 174-475 (770)
40 3eh2_A Protein transport prote 97.4 0.016 5.5E-07 68.7 24.5 224 322-548 170-471 (766)
41 3t3p_B Integrin beta-3; integr 97.3 0.0039 1.3E-07 69.0 16.4 188 308-507 99-355 (472)
42 3k6s_B Integrin beta-2; cell r 97.2 0.00086 2.9E-08 78.2 10.6 188 307-507 91-345 (687)
43 3vi3_B Integrin beta-1; beta p 97.0 0.022 7.5E-07 62.6 17.9 187 308-507 110-362 (454)
44 3v4v_B Integrin beta-7; cell a 96.8 0.035 1.2E-06 61.6 17.6 188 307-507 119-374 (503)
45 4g2a_A Hypothetical protein; t 95.8 0.19 6.5E-06 52.5 15.9 90 99-202 43-150 (322)
46 1o98_A 2,3-bisphosphoglycerate 25.9 2.2E+02 0.0074 31.7 9.5 75 406-481 94-177 (511)
47 3isy_A Bsupi, intracellular pr 24.9 1.8E+02 0.006 25.7 6.9 30 182-213 73-102 (120)
48 1srv_A Protein (groel (HSP60 c 20.3 80 0.0027 28.9 3.8 28 456-484 80-110 (145)
No 1
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.90 E-value=6.8e-23 Score=230.93 Aligned_cols=190 Identities=19% Similarity=0.151 Sum_probs=166.6
Q ss_pred CCCceEEEEEcCCCCCC--CChHHHHHHHHHHHHHhcCCCCcEEEEEeCCceEEeecc---ccccCHhHHHHHHHHHhcC
Q 004469 323 VFRKDVVFLVDVSGSMQ--GVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSS---MKLASQGTIINATQWLSSL 397 (751)
Q Consensus 323 ~~~~~vvfviD~SgSM~--g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~---~~~~t~~~i~~a~~~I~~l 397 (751)
.++.+++||||+||||. +.+++.+|+++..+++.|+++++|+|+.|++....+.+. +..++..+.+.+.++|+.+
T Consensus 75 ~~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~~~p~t~~l~~~~~~~~~~l~~~I~~L 154 (464)
T 4fx5_A 75 GSENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPTGGQLLRADYQSRAAAKEAVGRL 154 (464)
T ss_dssp -CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEEEESSSSSCEECSHHHHHHHHHHHHTC
T ss_pred CCCceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEEEecCCcccccCCHHHHHHHHHHHHcC
Confidence 46799999999999999 999999999999999999999999999999999877654 4567889999999999999
Q ss_pred CCCCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCCChh-hHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHH
Q 004469 398 VAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDER-GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILA 476 (751)
Q Consensus 398 ~a~GgT~l~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~~-~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA 476 (751)
.++|||++..||+.|++.+...++..+.|||||||..++.. .......+.. ..+++||+||+|.+.|..+|+.||
T Consensus 155 ~~~GgT~l~~aL~~A~~~l~~~~~~~~~IILLTDG~~~~~~~~~l~~~~~a~----~~~i~i~tiGiG~~~d~~~L~~IA 230 (464)
T 4fx5_A 155 HANGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESETPADLARAIQSS----IGNFTADCRGIGEDWEPKELRKIA 230 (464)
T ss_dssp CCCSCCCHHHHHHHHHHHHTTCTTSEEEEEEEESSCCTTSCHHHHHHHHHHH----TTTCEEEEEEESSSSCHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCCCCChHHHHHHHHHh----cCCCeEEEEEeCCccCHHHHHHHH
Confidence 99999999999999999998766667899999999987432 1222222221 235899999999999999999999
Q ss_pred HhCCCEEEEeCCCccHHHHHHHHHHHhccceEeeEEEEee
Q 004469 477 QIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETS 516 (751)
Q Consensus 477 ~~ggG~~~~i~~~~~l~~~l~~~l~~~~~p~l~di~l~~~ 516 (751)
+.++|.|+++.+.+++...+.+++..+.++.++|+++.+.
T Consensus 231 ~~tgG~~~~v~d~~~L~~~f~~i~~~~~s~~~~dv~l~l~ 270 (464)
T 4fx5_A 231 DALLGTVGIIRDPATLAEDFREMTAKSMGKEVADVALRLW 270 (464)
T ss_dssp HHTTCCEEEESSGGGHHHHHHHHHHHHHTCCEEEEEEEEE
T ss_pred HhCCCEEEEcCCHHHHHHHHHHHHHHhhchheeeeEEEEE
Confidence 9999999999999999999999999999999999998865
No 2
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.83 E-value=4.6e-20 Score=187.22 Aligned_cols=179 Identities=18% Similarity=0.236 Sum_probs=128.2
Q ss_pred CCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcC---CCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCC-
Q 004469 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA- 399 (751)
Q Consensus 324 ~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a- 399 (751)
.+.+++||||.||||.+.+++.+|+++..+++.|. ++++|+|+.|++......+... ....+.+.+.+.|+++.+
T Consensus 14 ~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~~~~~-~~~~~~~~~~~~i~~l~~~ 92 (223)
T 1q0p_A 14 GSMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSE-ADSSNADWVTKQLNEINYE 92 (223)
T ss_dssp -CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEECTTS-GGGGCHHHHHHHHHTCCTT
T ss_pred CceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceeecccc-CCCCCHHHHHHHHHhcccc
Confidence 47899999999999999999999999999987664 5789999999999877654322 222334556666776664
Q ss_pred ----CCCCchHHHHHHHHHHhhcCC--------CCccEEEEEecCCCC---ChhhHHHHHHHHh------hccCCCCCeE
Q 004469 400 ----GGGTNILLPLKQAIKLLSDTS--------ESIPLIFLITDGTVG---DERGICNEIKSYL------TNTRSISPRI 458 (751)
Q Consensus 400 ----~GgT~l~~aL~~A~~~l~~~~--------~~~~~IiLlTDG~~~---~~~~i~~~v~~~~------~~~~~~~~rI 458 (751)
+|+|++..||+.|++.+.... ...+.|||+|||..+ +.....+.+++.. ......+++|
T Consensus 93 ~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 172 (223)
T 1q0p_A 93 DHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDV 172 (223)
T ss_dssp SCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGEEE
T ss_pred cccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCChHHHHHHHHHHHhhhhhhhhcccCCcEE
Confidence 699999999999999987432 345689999999987 4444555555442 2233456899
Q ss_pred EEEEecCCCCHHHHHHHHHhCCC--EEEEeCCCccHHHHHHHHHHHh
Q 004469 459 CTFGVGLYCNHYFLQILAQIGRG--YYDSAYDPGSVDYRIRRFFTAA 503 (751)
Q Consensus 459 ft~GiG~~~n~~lL~~LA~~ggG--~~~~i~~~~~l~~~l~~~l~~~ 503 (751)
|+||+|...+...|+.||..++| +|+.+.+.+++...+.+++++.
T Consensus 173 ~~igvG~~~~~~~L~~iA~~~~G~~~~~~~~~~~~L~~~~~~i~~~s 219 (223)
T 1q0p_A 173 YVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDES 219 (223)
T ss_dssp EEEECSSCCCHHHHHHHSCCCTTCCCEEETTC---------------
T ss_pred EEEEecCcCCHHHHHHHhcCCCCCceEEEcCCHHHHHHHHHHHhccc
Confidence 99999999999999999999999 8999998888888777766544
No 3
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=99.82 E-value=4.3e-19 Score=178.23 Aligned_cols=174 Identities=12% Similarity=0.127 Sum_probs=135.0
Q ss_pred CCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcC---CCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCCC
Q 004469 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG 400 (751)
Q Consensus 324 ~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a~ 400 (751)
.+.+++||+|.||||.+.+++.+|+++..+++.|. ++++|+|+.|+++.+...+.....+ .+.+.+.|+++...
T Consensus 12 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~~~---~~~~~~~i~~l~~~ 88 (202)
T 1ijb_A 12 RLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKDRKR---PSELRRIASQVKYA 88 (202)
T ss_dssp SCEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTTCCCC---HHHHHHHHHTCCCC
T ss_pred CcccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEecCCCCC---HHHHHHHHHhCcCC
Confidence 37999999999999999999999999999999997 5789999999999877655322223 44555667777765
Q ss_pred C--CCchHHHHHHHHHHh-hc--CCCCccEEEEEecCCCCCh--hhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHH
Q 004469 401 G--GTNILLPLKQAIKLL-SD--TSESIPLIFLITDGTVGDE--RGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ 473 (751)
Q Consensus 401 G--gT~l~~aL~~A~~~l-~~--~~~~~~~IiLlTDG~~~~~--~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~ 473 (751)
| +|++..||+.|.+.+ .. .++..+.|||+|||..++. ..+.+.++.. .+ .+++||+||+|..+|...|+
T Consensus 89 gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~a~~l-~~---~gi~i~~igvG~~~~~~~L~ 164 (202)
T 1ijb_A 89 GSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGL-KK---KKVIVIPVGIGPHANLKQIR 164 (202)
T ss_dssp CBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGGGCTTHHHHHHHH-HH---TTEEEEEEEESTTSCHHHHH
T ss_pred CCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCccchHHHHHHHHHH-HH---CCCEEEEEecCCcCCHHHHH
Confidence 3 399999999998654 32 1345678999999998643 2343333333 22 35899999999999999999
Q ss_pred HHHHhC-CCEEEEeCCCccHHHHHHHHHHHhc
Q 004469 474 ILAQIG-RGYYDSAYDPGSVDYRIRRFFTAAS 504 (751)
Q Consensus 474 ~LA~~g-gG~~~~i~~~~~l~~~l~~~l~~~~ 504 (751)
.||..+ +|+++.+.+.+++...+.++.+.+.
T Consensus 165 ~iA~~~~~~~~~~~~~~~~L~~~~~~i~~~iC 196 (202)
T 1ijb_A 165 LIEKQAPENKAFVLSSVDELEQQRDEIVSYLC 196 (202)
T ss_dssp HHHHHCTTCCCEEESSGGGHHHHHHHHHHHHH
T ss_pred HHhCCCCcccEEEeCCHHHHHHHHHHHHHHhh
Confidence 999975 6788889999999888888877664
No 4
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=1.4e-19 Score=183.18 Aligned_cols=175 Identities=23% Similarity=0.279 Sum_probs=134.5
Q ss_pred CCCCceEEEEEcCCCCCCCC-----hHHHHHHHHHHHHHhcCCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHh-
Q 004469 322 KVFRKDVVFLVDVSGSMQGV-----LLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS- 395 (751)
Q Consensus 322 ~~~~~~vvfviD~SgSM~g~-----~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~- 395 (751)
+..+.+++||||+||||.+. +++.+|+++..++..++ +++|+|+.|+++.....+.. .+.+.+..+++.+.
T Consensus 8 ~~~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~~~~~~~--~~~~~~~~~l~~l~~ 84 (218)
T 3ibs_A 8 KRKGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAFTQLPIT--SDYISAKMFLESISP 84 (218)
T ss_dssp --CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEEEEEEEE--SCHHHHHHHHHTCCG
T ss_pred ccCCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCceEeCCCC--CCHHHHHHHHHhcCc
Confidence 34679999999999999975 89999999999999987 89999999999988765532 24455555444443
Q ss_pred cCCCCCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecC----------
Q 004469 396 SLVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGL---------- 465 (751)
Q Consensus 396 ~l~a~GgT~l~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~---------- 465 (751)
.....|+|++..||..|++.+...+...+.|||+|||..+.. .....++.. . ..+++||+||+|.
T Consensus 85 ~~~~~g~T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~-~~~~~~~~~-~---~~~i~v~~igig~~~~~~~~~~g 159 (218)
T 3ibs_A 85 SLISKQGTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEG-GAVEAAKAA-A---EKGIQVSVLGVGMPEGAPIPVEG 159 (218)
T ss_dssp GGCCSCSCCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCS-CHHHHHHHH-H---TTTEEEEEEEESCTTCEECBCTT
T ss_pred ccCCCCCCcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCC-cHHHHHHHH-H---hcCCEEEEEEecCCCCCcccccC
Confidence 122369999999999999988765566789999999998755 233333322 2 2458999999998
Q ss_pred ---------------CCCHHHHHHHHHhCCCEEEEeCCCccHHHHHHHHHHHhc
Q 004469 466 ---------------YCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAAS 504 (751)
Q Consensus 466 ---------------~~n~~lL~~LA~~ggG~~~~i~~~~~l~~~l~~~l~~~~ 504 (751)
..|..+|+.||+.++|.|+++.+..+....+.+.+.++.
T Consensus 160 ~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~~~~~~~~~~~~~~i~~l~ 213 (218)
T 3ibs_A 160 TNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDNSNSAQKAISQEISKMA 213 (218)
T ss_dssp SSCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECSSSHHHHHHHHHHHHHH
T ss_pred CCceeEcCCCCEeEecCCHHHHHHHHHhcCCEEEECCCChHHHHHHHHHHHHhh
Confidence 678999999999999999999986666556666666554
No 5
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=99.80 E-value=3.8e-19 Score=186.55 Aligned_cols=177 Identities=20% Similarity=0.198 Sum_probs=136.8
Q ss_pred CCceEEEEEcCCCCCCCChH-HHHHHHHHHHHHhcC---CCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcC--
Q 004469 324 FRKDVVFLVDVSGSMQGVLL-EQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSL-- 397 (751)
Q Consensus 324 ~~~~vvfviD~SgSM~g~~i-~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l-- 397 (751)
.+.|++||||.||||.+..+ +.+|+++..+++.|. ++++|+|+.|++.+....+. ......+.+.+.+.|+.+
T Consensus 17 ~~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~~l-~~~~~~~~~~~~~~i~~l~~ 95 (266)
T 4hqo_A 17 EQVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIRL-GSGQSIDKRQALSKVTELRK 95 (266)
T ss_dssp CCEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEECT-TSHHHHCHHHHHHHHHHHHH
T ss_pred CceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEEec-CCCCccCHHHHHHHHHHhhh
Confidence 46899999999999998888 589999999999997 68999999999998876653 223222355566666665
Q ss_pred --CCCCCCchHHHHHHHHHHhhcC---CCCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHH
Q 004469 398 --VAGGGTNILLPLKQAIKLLSDT---SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFL 472 (751)
Q Consensus 398 --~a~GgT~l~~aL~~A~~~l~~~---~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL 472 (751)
.++|+|++..||+.|.+++... ++..+.|||||||.+++...+.+.++.... .+++||+||||...+..+|
T Consensus 96 ~~~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~d~~~~~~~a~~l~~----~gi~i~~iGiG~~~~~~~L 171 (266)
T 4hqo_A 96 TYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNSKYRALEVANKLKQ----RNVRLAVIGIGQGINHQFN 171 (266)
T ss_dssp HCCCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCSCHHHHHHHHHHHHH----TTCEEEEEECSSSCCHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCCCchHHHHHHHHHHH----CCCEEEEEecCcccCHHHH
Confidence 6789999999999999888653 345579999999999876555555544432 3589999999999999999
Q ss_pred HHHHHhC--C--CEEEEeCCCccHHHHHHHHHHHhcc
Q 004469 473 QILAQIG--R--GYYDSAYDPGSVDYRIRRFFTAASS 505 (751)
Q Consensus 473 ~~LA~~g--g--G~~~~i~~~~~l~~~l~~~l~~~~~ 505 (751)
+.||..+ + +.++++.+.+++...+.++++++..
T Consensus 172 ~~iA~~~~~~g~~~~~~~~d~~~L~~i~~~l~~~iC~ 208 (266)
T 4hqo_A 172 RLIAGCRPREPNCKFYSYADWNEAVALIKPFIAKVCT 208 (266)
T ss_dssp HHHHTCCTTCSSCTTEECSCHHHHHHHHHHHHCCCEE
T ss_pred HHhhCCCCCCCCCCeEEecCHHHHHHHHHHHHhhhcc
Confidence 9999874 3 3777787777776655555554443
No 6
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=99.78 E-value=2e-18 Score=172.99 Aligned_cols=167 Identities=14% Similarity=0.106 Sum_probs=131.4
Q ss_pred CCCCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhc---CCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCC
Q 004469 322 KVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV 398 (751)
Q Consensus 322 ~~~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L---~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~ 398 (751)
...+.|++||||.||||.+.+++.+|+++..+++.| +++++|+|+.|+++++...+.....+ .+.+.+.|+++.
T Consensus 18 ~~~~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~~~---~~~~~~~i~~l~ 94 (199)
T 3zqk_A 18 NSMVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEYPFSEAQS---KGDILQRLREIR 94 (199)
T ss_dssp -CCCCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEEECTTSCCC---HHHHHHHHHHCC
T ss_pred CCCCcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEEEecCCcCC---HHHHHHHHHhCc
Confidence 346799999999999999999999999999999999 47899999999999987765432233 445556677776
Q ss_pred CC-C-CCchHHHHHHHHHHhhc-----CCCCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHH
Q 004469 399 AG-G-GTNILLPLKQAIKLLSD-----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYF 471 (751)
Q Consensus 399 a~-G-gT~l~~aL~~A~~~l~~-----~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~l 471 (751)
.. | +|++..||+.|++.+.. .++..+.|||+|||...+.-. + ...+++||+||+|.++|...
T Consensus 95 ~~gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d~v~------~-----~~~~v~v~~iGiG~~~~~~~ 163 (199)
T 3zqk_A 95 YQGGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDEIK------R-----LPGDIQVVPIGVGPNANVQE 163 (199)
T ss_dssp CCCCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSSCCC------C-----CCTTEEEEEEEESTTCCHHH
T ss_pred CCCCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCchHHH------H-----HhCCCEEEEEEcCCCCCHHH
Confidence 65 4 59999999999885321 123457899999999765421 0 12468999999999999999
Q ss_pred HHHHHHhCCCEEEEeCCCccHHHHHHHHHHHhc
Q 004469 472 LQILAQIGRGYYDSAYDPGSVDYRIRRFFTAAS 504 (751)
Q Consensus 472 L~~LA~~ggG~~~~i~~~~~l~~~l~~~l~~~~ 504 (751)
|+.||. +++ ++++.+.++|...+.+++.++.
T Consensus 164 L~~iA~-~~~-~~~~~~~~~L~~~~~~l~~~~c 194 (199)
T 3zqk_A 164 LERIGW-PNA-PILIQDFETLPREAPDLVLQRC 194 (199)
T ss_dssp HHHHHT-TSC-CEEESCTTTHHHHHHHHHHHHH
T ss_pred HHHHhC-CCc-eEEeCCHHHHHHHHHHHHHhhc
Confidence 999998 444 4589999999999888887765
No 7
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=99.78 E-value=1.3e-18 Score=183.81 Aligned_cols=179 Identities=19% Similarity=0.162 Sum_probs=139.6
Q ss_pred CCceEEEEEcCCCCCCCChH-HHHHHHHHHHHHhcCC---CCcEEEEEeCCceEEeeccccc--cCHhHHHHHHHHHh-c
Q 004469 324 FRKDVVFLVDVSGSMQGVLL-EQTKNALSASLSKLNP---QDSFNIIAFNGETHLFSSSMKL--ASQGTIINATQWLS-S 396 (751)
Q Consensus 324 ~~~~vvfviD~SgSM~g~~i-~~aK~al~~~L~~L~~---~d~f~Ii~F~~~~~~~~~~~~~--~t~~~i~~a~~~I~-~ 396 (751)
.+.+|+||||.||||.+..+ +.+|+++..+++.|.. +++|+|+.|++++....+.... .+.+.+..+++.+. .
T Consensus 20 ~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~~~~~~~l~~~i~~l~~~ 99 (281)
T 4hqf_A 20 DEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHSDASKNKEKALIIIKSLLST 99 (281)
T ss_dssp SCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEECSSCSSCHHHHHHHHHHHHHT
T ss_pred CceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEccccCccCHHHHHHHHHHHhhc
Confidence 47999999999999998777 8999999999999986 7899999999998765543221 13445555555554 2
Q ss_pred CCCCCCCchHHHHHHHHHHhhcC---CCCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHH
Q 004469 397 LVAGGGTNILLPLKQAIKLLSDT---SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ 473 (751)
Q Consensus 397 l~a~GgT~l~~aL~~A~~~l~~~---~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~ 473 (751)
...+|+|++..||+.|.+.+... ++..+.|||||||..++...+.+.++.... .+++||+||||...|..+|+
T Consensus 100 ~~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~d~~~~~~~~~~l~~----~gv~i~~igiG~~~~~~~L~ 175 (281)
T 4hqf_A 100 NLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDSIQDSLKESRKLSD----RGVKIAVFGIGQGINVAFNR 175 (281)
T ss_dssp TGGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCSCHHHHHHHHHHHHH----TTCEEEEEEESSSCCHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCCcHHHHHHHHHHHH----CCCEEEEEeCCCccCHHHHH
Confidence 34579999999999998887643 234678999999999876555555444432 35899999999999999999
Q ss_pred HHHHhC--CC--EEEEeCCCccHHHHHHHHHHHhccc
Q 004469 474 ILAQIG--RG--YYDSAYDPGSVDYRIRRFFTAASSV 506 (751)
Q Consensus 474 ~LA~~g--gG--~~~~i~~~~~l~~~l~~~l~~~~~p 506 (751)
.||... +| .++.+.+.+++...+..+..++...
T Consensus 176 ~iA~~~~~~g~~~~~~~~~~~~L~~~~~~l~~~iC~~ 212 (281)
T 4hqf_A 176 FLVGCHPSDGKCNLYADSAWENVKNVIGPFMKAVCVE 212 (281)
T ss_dssp HHTTSCSSSSCCTTEEEECGGGHHHHHHHHHHHHHHH
T ss_pred hhhCCCCCCCCCceEEecchhhhhcccCCcccccCCC
Confidence 999873 44 7788889899988888877777654
No 8
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=99.77 E-value=3.9e-18 Score=167.49 Aligned_cols=172 Identities=17% Similarity=0.201 Sum_probs=128.1
Q ss_pred CCceEEEEEcCCCCCCCChHHHHHHHHHHHHHh-cCCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCCCCC
Q 004469 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSK-LNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGG 402 (751)
Q Consensus 324 ~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~-L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a~Gg 402 (751)
.+.+++||+|.||||.+..++ .++++..++.. +.++++++|+.|++......+.. .+.+.+..+++.+..+.++|+
T Consensus 5 ~~~dvv~vlD~SgSM~~~~~~-~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~g~ 81 (182)
T 1shu_X 5 RAFDLYFVLDKSGSVANNWIE-IYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLT--GDRGKISKGLEDLKRVSPVGE 81 (182)
T ss_dssp SCEEEEEEEECSGGGGGGHHH-HHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEE--CCHHHHHHHHHHHHTCCCCSC
T ss_pred CceeEEEEEECCCCcccCHHH-HHHHHHHHHHHhcCCCceEEEEEeCCCceEEECCC--CCHHHHHHHHHhcccCCCCCC
Confidence 478999999999999986553 33444444433 45799999999999988765532 467788888888887778899
Q ss_pred CchHHHHHHHHHHhhcC--CCCccEEEEEecCCCCChhh-HHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHHhC
Q 004469 403 TNILLPLKQAIKLLSDT--SESIPLIFLITDGTVGDERG-ICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIG 479 (751)
Q Consensus 403 T~l~~aL~~A~~~l~~~--~~~~~~IiLlTDG~~~~~~~-i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~~g 479 (751)
|++..||+.|++.+... +...+.|||+|||..++... ......+.+. ..++++|+||+| ..+...|+.||..+
T Consensus 82 T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~---~~~i~i~~igvg-~~~~~~L~~ia~~~ 157 (182)
T 1shu_X 82 TYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISR---SLGASVYCVGVL-DFEQAQLERIADSK 157 (182)
T ss_dssp CCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTTHHHHHHHHHHHHH---HTTCEEEEEECS-SCCHHHHHHHSSSG
T ss_pred chHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCCCchhHHHHHHHHH---hCCCEEEEEeCC-cCCHHHHHHHhCCC
Confidence 99999999999988653 34567999999999875431 1122222222 235899999999 56899999999999
Q ss_pred CCEEEEeCCCccHHHHHHHHHHH
Q 004469 480 RGYYDSAYDPGSVDYRIRRFFTA 502 (751)
Q Consensus 480 gG~~~~i~~~~~l~~~l~~~l~~ 502 (751)
+|.|+...+.+++...+.++.++
T Consensus 158 ~~~~~~~~~~~~L~~~~~~i~~~ 180 (182)
T 1shu_X 158 EQVFPVKGGFQALKGIINSILAQ 180 (182)
T ss_dssp GGEEESSSTTHHHHHHHHHHHHT
T ss_pred CceEEccCCHHHHHHHHHHHHhc
Confidence 88877665777787766666544
No 9
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=99.77 E-value=6.8e-19 Score=175.24 Aligned_cols=175 Identities=17% Similarity=0.173 Sum_probs=133.6
Q ss_pred CCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcC-CCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCC-CC
Q 004469 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN-PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA-GG 401 (751)
Q Consensus 324 ~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~-~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a-~G 401 (751)
.+.+++||||.||||.+.+++.+|+++..+++.|. ++++|+|+.|++..+...+... ..+.+.+.+.|+++.. +|
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~~~~l~~---~~~~~~~~~~i~~l~~~~g 80 (194)
T 1mf7_A 4 EDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKE---FQNNPNPRSLVKPITQLLG 80 (194)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEEECHHH---HHHSCCHHHHHTTCCCCCS
T ss_pred CCeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceEEEecCC---cCCHHHHHHHHHhCcCCCC
Confidence 46899999999999999899999999999999996 5789999999999886654321 1223445666777775 79
Q ss_pred CCchHHHHHHHHHHhhc-----CCCCccEEEEEecCCCC-ChhhHHHHHHHHhhccCCCCCeEEEEEecCCCC----HHH
Q 004469 402 GTNILLPLKQAIKLLSD-----TSESIPLIFLITDGTVG-DERGICNEIKSYLTNTRSISPRICTFGVGLYCN----HYF 471 (751)
Q Consensus 402 gT~l~~aL~~A~~~l~~-----~~~~~~~IiLlTDG~~~-~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n----~~l 471 (751)
+|++..||+.|.+.+.. .++..+.|||+|||..+ +...+.+.++.. . ..+++||+||+|...| ...
T Consensus 81 ~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d~~~~~~~~~~~-~---~~gi~v~~igvG~~~~~~~~~~~ 156 (194)
T 1mf7_A 81 RTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPLGYEDVIPEA-D---REGVIRYVIGVGDAFRSEKSRQE 156 (194)
T ss_dssp CBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCGGGTHHHH-H---HTTEEEEEEEESGGGCSHHHHHH
T ss_pred CchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCchhhHHHHHHH-H---HCCCEEEEEEecccccccccHHH
Confidence 99999999999975422 12345789999999987 443222222222 1 1358999999999876 789
Q ss_pred HHHHHHhC-CCEEEEeCCCccHHHHHHHHHHHhcc
Q 004469 472 LQILAQIG-RGYYDSAYDPGSVDYRIRRFFTAASS 505 (751)
Q Consensus 472 L~~LA~~g-gG~~~~i~~~~~l~~~l~~~l~~~~~ 505 (751)
|+.||..+ +|+++.+.+.+++...+.++.+++..
T Consensus 157 L~~iA~~~~~~~~~~~~~~~~l~~~~~~i~~~ic~ 191 (194)
T 1mf7_A 157 LNTIASKPPRDHVFQVNNFEALKTIQNQLREKIFC 191 (194)
T ss_dssp HHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHHT
T ss_pred HHHHhCCCCcccEEEeCCHHHHHHHHHHHHHHHhh
Confidence 99999986 58899999999998888877776643
No 10
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=99.77 E-value=2.7e-18 Score=175.05 Aligned_cols=172 Identities=14% Similarity=0.094 Sum_probs=134.3
Q ss_pred CCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcC---CCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCCC
Q 004469 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG 400 (751)
Q Consensus 324 ~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a~ 400 (751)
.+.+++||+|.||||. .++.+|+++..+++.|. ++++|+|+.|+++.....+. . +..+...+++.|+.+.+.
T Consensus 21 ~~~div~vlD~SgSM~--~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~~l-~--~~~~~~~~~~~i~~l~~~ 95 (223)
T 2b2x_A 21 TQLDIVIVLDGSNSIY--PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNL-N--KYSSTEEVLVAANKIVQR 95 (223)
T ss_dssp -CEEEEEEEECSTTCC--CHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEECT-T--TCCSHHHHHHHHTTCCCC
T ss_pred CcceEEEEEECCCChh--hHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEEec-C--CCCCHHHHHHHHHhhhcc
Confidence 4689999999999998 48999999999999885 68999999999998876653 2 233456667778887765
Q ss_pred C--CCchHHHHHHHHHH-hh----cCCCCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCC-----
Q 004469 401 G--GTNILLPLKQAIKL-LS----DTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCN----- 468 (751)
Q Consensus 401 G--gT~l~~aL~~A~~~-l~----~~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n----- 468 (751)
| +|++..||+.|.+. +. ..++..+.|||+|||..++.......++. +. ..+++||+||+|...|
T Consensus 96 gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~-~~---~~gi~v~~igvG~~~~~~~~~ 171 (223)
T 2b2x_A 96 GGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDNYRLKQVIQD-CE---DENIQRFSIAILGHYNRGNLS 171 (223)
T ss_dssp CCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTGGGHHHHHHH-HH---TTTEEEEEEEECGGGC---CC
T ss_pred CCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCccHHHHHHH-HH---HCCCEEEEEEecCcccccccc
Confidence 4 49999999999987 33 12345678999999999876544333333 22 2468999999998776
Q ss_pred ----HHHHHHHHHh-CCCEEEEeCCCccHHHHHHHHHHHhc
Q 004469 469 ----HYFLQILAQI-GRGYYDSAYDPGSVDYRIRRFFTAAS 504 (751)
Q Consensus 469 ----~~lL~~LA~~-ggG~~~~i~~~~~l~~~l~~~l~~~~ 504 (751)
...|+.||.. ++|+|+.+.+.+++...+..+.+++.
T Consensus 172 ~~~~~~~L~~iA~~p~~g~~~~~~~~~~L~~i~~~i~~~ic 212 (223)
T 2b2x_A 172 TEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKALGERIF 212 (223)
T ss_dssp CHHHHHHHHTTSCSSGGGTEEEESSTTGGGGGHHHHHTTTC
T ss_pred chhHHHHHHHHhCCCchhcEEEeCCHHHHHHHHHHHHHhhc
Confidence 4789999998 88999999999999887777666554
No 11
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=99.76 E-value=1.2e-18 Score=173.61 Aligned_cols=174 Identities=19% Similarity=0.181 Sum_probs=133.6
Q ss_pred CCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhc-CCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCC-CCC
Q 004469 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL-NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV-AGG 401 (751)
Q Consensus 324 ~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L-~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~-a~G 401 (751)
.+.+++||+|.||||.+..++.+++++..+++.| +++++|+|+.|++......+.. +..+...+.+.|+.+. .+|
T Consensus 8 ~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~~~~~~~---~~~~~~~~~~~i~~l~~~~g 84 (198)
T 1n3y_A 8 QEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFE---EFRRSSNPLSLLASVHQLQG 84 (198)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEEECHH---HHHHCSSGGGGGTTCCCCCS
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCccEEEecC---ccCCHHHHHHHHhcCcCCCC
Confidence 5689999999999999988999999999999999 6899999999999987654421 1122334555677665 469
Q ss_pred CCchHHHHHHHHHHh-hc----CCCCccEEEEEecCCCC-ChhhHHHHHHHHhhccCCCCCeEEEEEecCCC----CHHH
Q 004469 402 GTNILLPLKQAIKLL-SD----TSESIPLIFLITDGTVG-DERGICNEIKSYLTNTRSISPRICTFGVGLYC----NHYF 471 (751)
Q Consensus 402 gT~l~~aL~~A~~~l-~~----~~~~~~~IiLlTDG~~~-~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~----n~~l 471 (751)
+|++..||+.|++.+ .. .++..+.|||+|||..+ +.....+.++.. .+ .+++||+||+|... +...
T Consensus 85 ~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~~~-~~---~gi~i~~igvG~~~~~~~~~~~ 160 (198)
T 1n3y_A 85 FTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMA-DA---AGIIRYAIGVGLAFQNRNSWKE 160 (198)
T ss_dssp CBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCHHHHHHHH-HH---TTCEEEEEEESGGGGSSTTHHH
T ss_pred CchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCcccHHHHHHHH-HH---CCCEEEEEEccccccccccHHH
Confidence 999999999999544 32 13456789999999987 433223323222 22 35899999999987 6899
Q ss_pred HHHHHHhCCCEE-EEeCCCccHHHHHHHHHHHhc
Q 004469 472 LQILAQIGRGYY-DSAYDPGSVDYRIRRFFTAAS 504 (751)
Q Consensus 472 L~~LA~~ggG~~-~~i~~~~~l~~~l~~~l~~~~ 504 (751)
|+.||..++|.| +.+.+.+++...+.++.+++.
T Consensus 161 L~~iA~~~~g~~~~~~~~~~~l~~~~~~i~~~ic 194 (198)
T 1n3y_A 161 LNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIF 194 (198)
T ss_dssp HHHHSCSSSGGGEEEESSGGGGGGGHHHHHHHHH
T ss_pred HHHHHcCCCcccEEEeCCHHHHHHHHHHHHhhee
Confidence 999999999986 778888889888887777664
No 12
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=99.76 E-value=4.3e-18 Score=172.21 Aligned_cols=173 Identities=13% Similarity=0.094 Sum_probs=134.1
Q ss_pred CCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcC---CCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCCC
Q 004469 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG 400 (751)
Q Consensus 324 ~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a~ 400 (751)
.+.+++||+|.||||. .++.+|+++..+++.|. ++++|+|+.|++......+. . +..+...+.+.|+.+.+.
T Consensus 6 ~~~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~~l-~--~~~~~~~~~~~i~~l~~~ 80 (213)
T 1pt6_A 6 TQLDIVIVLDGSNSIY--PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNL-N--KYSSTEEVLVAAKKIVQR 80 (213)
T ss_dssp -CEEEEEEEECCTTCC--CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECT-T--TCSSHHHHHHHHHTCCCC
T ss_pred CCccEEEEEECCCChh--hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEEec-c--ccCCHHHHHHHHHhccCC
Confidence 3689999999999998 58999999999999885 68999999999998876654 2 223456667778877765
Q ss_pred -C-CCchHHHHHHHHHHh-h----cCCCCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCC-----
Q 004469 401 -G-GTNILLPLKQAIKLL-S----DTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCN----- 468 (751)
Q Consensus 401 -G-gT~l~~aL~~A~~~l-~----~~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n----- 468 (751)
| +|++..||+.|.+.+ . ..++..+.|||+|||..++.......++.. .+ .+++||+||+|...|
T Consensus 81 ~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~~-~~---~gi~i~~igig~~~~~~~~~ 156 (213)
T 1pt6_A 81 GGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDNHRLKKVIQDC-ED---ENIQRFSIAILGSYNRGNLS 156 (213)
T ss_dssp CCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCSHHHHHHHHHH-HH---TTEEEEEEEECHHHHHTTCC
T ss_pred CCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCccHHHHHHHH-HH---CCCEEEEEEecccccccccc
Confidence 4 489999999999874 3 123456789999999988764333333322 22 358999999998654
Q ss_pred ----HHHHHHHHHh-CCCEEEEeCCCccHHHHHHHHHHHhcc
Q 004469 469 ----HYFLQILAQI-GRGYYDSAYDPGSVDYRIRRFFTAASS 505 (751)
Q Consensus 469 ----~~lL~~LA~~-ggG~~~~i~~~~~l~~~l~~~l~~~~~ 505 (751)
...|+.||.. ++|+++.+.+.+++...+..+.+++..
T Consensus 157 ~~~~~~~L~~iA~~~~~g~~~~~~~~~~l~~i~~~l~~~i~~ 198 (213)
T 1pt6_A 157 TEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKTLGERIFA 198 (213)
T ss_dssp CHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHTC
T ss_pred chhhHHHHHHHhCCCchhcEEEeCCHHHHHHHHHHHHHhhee
Confidence 4789999998 789999999999998888887777764
No 13
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=99.75 E-value=2.3e-17 Score=163.58 Aligned_cols=163 Identities=15% Similarity=0.144 Sum_probs=123.6
Q ss_pred CCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCC---CCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCC-
Q 004469 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP---QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA- 399 (751)
Q Consensus 324 ~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~---~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a- 399 (751)
.+.+++||+|.||||.+.+++.+|+++..+++.+.. +++++|+.|+++.....+.....+ .+.+.+.|+.+..
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~---~~~~~~~i~~l~~~ 80 (189)
T 1atz_A 4 QPLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWNVVPE---KAHLLSLVDVMQRE 80 (189)
T ss_dssp CCEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTCCCC---HHHHHHHHHTCCCC
T ss_pred CceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEEecCCCCC---HHHHHHHHHhCcCC
Confidence 468999999999999999999999999999999973 479999999999887655322233 4445555676665
Q ss_pred CCCCchHHHHHHHHHHhhcC-----CCCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHH
Q 004469 400 GGGTNILLPLKQAIKLLSDT-----SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQI 474 (751)
Q Consensus 400 ~GgT~l~~aL~~A~~~l~~~-----~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~ 474 (751)
+|||++..||+.|.+.+... ++..+.+|++|||..++. ..+.++. +.+ .++++|+||+|...|...|+.
T Consensus 81 ~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~~--~~~~~~~-~~~---~gi~v~~igvG~~~~~~~L~~ 154 (189)
T 1atz_A 81 GGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVDS--VDAAADA-ARS---NRVTVFPIGIGDRYDAAQLRI 154 (189)
T ss_dssp CCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSSC--CHHHHHH-HHH---TTEEEEEEEESSSSCHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCch--HHHHHHH-HHH---CCCEEEEEEcCCcCCHHHHHH
Confidence 69999999999999987542 223456888999987543 2222222 222 358999999999999999999
Q ss_pred HHHhCCC-EEEEeCCCccHHHH
Q 004469 475 LAQIGRG-YYDSAYDPGSVDYR 495 (751)
Q Consensus 475 LA~~ggG-~~~~i~~~~~l~~~ 495 (751)
||..++| +++.+.+.+++...
T Consensus 155 iA~~~~~~~~~~~~~~~~~~~l 176 (189)
T 1atz_A 155 LAGPAGDSNVVKLQRIEDLPTM 176 (189)
T ss_dssp HTGGGGGGGCEEESSTTHHHHH
T ss_pred HHCCCcccCEEEecChhhHHHH
Confidence 9999876 45667777777653
No 14
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.75 E-value=7.8e-18 Score=165.77 Aligned_cols=171 Identities=17% Similarity=0.157 Sum_probs=128.2
Q ss_pred CCCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhc-CCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCCCC
Q 004469 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL-NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGG 401 (751)
Q Consensus 323 ~~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L-~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a~G 401 (751)
..+.|++||||.||||.+ .++..++++..++..+ .++++|+|+.|++..+...+.. .+.+.+..+++.+..+.++|
T Consensus 5 ~~~~div~vlD~SgSM~~-~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~l~--~~~~~~~~~i~~l~~~~~~g 81 (185)
T 3n2n_F 5 YGGFDLYFILDKSGSVLH-HWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLT--EDREQIRQGLEELQKVLPGG 81 (185)
T ss_dssp BSEEEEEEEEECSGGGGG-GHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEE--CCHHHHHHHHHHHHTCCCCS
T ss_pred CCCeeEEEEEeCCCChhh-hHHHHHHHHHHHHHHhCCCCcEEEEEEEecCceEEeccC--CCHHHHHHHHHHHhhhcCCC
Confidence 357899999999999987 5777777777777664 5789999999999988766532 37778888888888777889
Q ss_pred CCchHHHHHHHHHHhhc----CCCCccEEEEEecCCCCChhh--HHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHH
Q 004469 402 GTNILLPLKQAIKLLSD----TSESIPLIFLITDGTVGDERG--ICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQIL 475 (751)
Q Consensus 402 gT~l~~aL~~A~~~l~~----~~~~~~~IiLlTDG~~~~~~~--i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~L 475 (751)
+|++..||+.|.+.+.. .....+.|||+|||..++... .....+ .+. ..+++||+||+| +.|...|+.|
T Consensus 82 ~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~-~~~---~~gi~i~~igvg-~~~~~~L~~i 156 (185)
T 3n2n_F 82 DTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREAN-RSR---DLGAIVYAVGVK-DFNETQLARI 156 (185)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHHHHHHHHHHHH-HHH---HTTEEEEEEECS-SCCHHHHTTT
T ss_pred CccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCCcccchHHHHH-HHH---HCCCEEEEEEec-cCCHHHHHHH
Confidence 99999999999997631 123457899999999875431 122222 222 235899999999 7799999999
Q ss_pred HHhCCCEEEEeCC-CccHHHHHHHHHHH
Q 004469 476 AQIGRGYYDSAYD-PGSVDYRIRRFFTA 502 (751)
Q Consensus 476 A~~ggG~~~~i~~-~~~l~~~l~~~l~~ 502 (751)
|..+ |.++.+.+ .+++...+.++.++
T Consensus 157 A~~~-~~~~~~~~~~~~L~~~~~~i~~~ 183 (185)
T 3n2n_F 157 ADSK-DHVFPVNDGFQALQGIIHSILKK 183 (185)
T ss_dssp SSSG-GGEEEHHHHHHHHHHHHHHHHHT
T ss_pred hCCC-CCeEEeccHHHHHHHHHHHHHHh
Confidence 9764 66666665 66676666665544
No 15
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=99.74 E-value=2.7e-17 Score=164.67 Aligned_cols=171 Identities=17% Similarity=0.091 Sum_probs=131.5
Q ss_pred CceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcC---CCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCCC-
Q 004469 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG- 400 (751)
Q Consensus 325 ~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a~- 400 (751)
+.+++||+|.||||. .++.+|+++..+++.|. ++++++|+.|+++.+...+.. +..+...+.+.|+.+.+.
T Consensus 6 ~~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~~l~---~~~~~~~~~~~i~~l~~~~ 80 (200)
T 1v7p_C 6 LIDVVVVCDESNSIY--PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLN---TYKTKEEMIVATSQTSQYG 80 (200)
T ss_dssp CEEEEEEEECCTTCC--CHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTT---TCSSHHHHHHHHHHCCCCC
T ss_pred cccEEEEEECCCCcc--cHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEEeCC---CcCCHHHHHHHHHhhhccC
Confidence 689999999999998 49999999999999996 689999999999988765532 223556667777877765
Q ss_pred C-CCchHHHHHHHHHH-hhc----CCCCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEec-----CCCC-
Q 004469 401 G-GTNILLPLKQAIKL-LSD----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVG-----LYCN- 468 (751)
Q Consensus 401 G-gT~l~~aL~~A~~~-l~~----~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG-----~~~n- 468 (751)
| +|++..||+.|.+. +.. .++..+.|||+|||..++.....+.++.. .+ .+++||+||+| ...+
T Consensus 81 G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~~~~~~~~~~~-~~---~gi~i~~igvg~~~~~~~~~~ 156 (200)
T 1v7p_C 81 GDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGSMLKAVIDQC-NH---DNILRFGIAVLGYLNRNALDT 156 (200)
T ss_dssp CSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGGGHHHHHHHH-HH---TTEEEEEEEECHHHHHTTCCC
T ss_pred CCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCcccHHHHHHHH-HH---CCCEEEEEEecccccccccch
Confidence 4 69999999999986 432 13456789999999998765443333332 22 35899999994 4555
Q ss_pred ---HHHHHHHHHhCCCEE-EEeCCCccHHHHHHHHHHHhc
Q 004469 469 ---HYFLQILAQIGRGYY-DSAYDPGSVDYRIRRFFTAAS 504 (751)
Q Consensus 469 ---~~lL~~LA~~ggG~~-~~i~~~~~l~~~l~~~l~~~~ 504 (751)
...|+.||..++|.| +.+.+.+++...+..+.+++.
T Consensus 157 ~~~~~~L~~iA~~~~g~~~~~~~~~~~l~~i~~~i~~~ic 196 (200)
T 1v7p_C 157 KNLIKEIKAIASIPTERYFFNVSDEAALLEKAGTLGEQIF 196 (200)
T ss_dssp HHHHHHHHHHSCSSHHHHEEEESSSGGGHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhCCccHhcEEEcCCHHHHHHHHHHHHhhhc
Confidence 567999999998865 678888999888887777664
No 16
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=99.73 E-value=1.8e-18 Score=170.25 Aligned_cols=166 Identities=14% Similarity=0.096 Sum_probs=124.3
Q ss_pred CceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCC-CCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCCCCCC
Q 004469 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP-QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGT 403 (751)
Q Consensus 325 ~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~-~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a~GgT 403 (751)
+.+++||+|.||||.+.+++.+|+++..+++.|.+ +++++|+.|+++++...+.....+.+++..+++.|..+ .|+|
T Consensus 2 ~~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~~~~i~~~--~g~T 79 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVKHM--LLLT 79 (179)
T ss_dssp CEEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEEECHHHHHHHCCHHHHHTTCCCC--CBCC
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeEEEcCcccCCHHHHHHHHHhcccC--CCCC
Confidence 57999999999999999999999999999999965 56999999999988765432212233455555444433 4899
Q ss_pred chHHHHHHHHHH-hhc----CCCCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCC----HHHHHH
Q 004469 404 NILLPLKQAIKL-LSD----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCN----HYFLQI 474 (751)
Q Consensus 404 ~l~~aL~~A~~~-l~~----~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n----~~lL~~ 474 (751)
++..||+.|.+. +.. .++..+.|||+|||..++..... . ..+++||+||+|...+ ...|+.
T Consensus 80 ~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~~~~-------~---~~~i~i~~igvG~~~~~~~~~~~L~~ 149 (179)
T 1mjn_A 80 NTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNID-------A---AKDIIRYIIGIGKHFQTKESQETLHK 149 (179)
T ss_dssp CHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCSCCG-------G---GTTSEEEEEEESGGGCSHHHHHTTGG
T ss_pred hHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCcchH-------H---HCCCEEEEEEccccccccccHHHHHH
Confidence 999999999964 332 13345789999999987653221 1 2358999999999877 378999
Q ss_pred HHHhCCC-EEEEeCCCccHHHHHHHHHHH
Q 004469 475 LAQIGRG-YYDSAYDPGSVDYRIRRFFTA 502 (751)
Q Consensus 475 LA~~ggG-~~~~i~~~~~l~~~l~~~l~~ 502 (751)
||..++| +++.+.+.+++...+.++.++
T Consensus 150 iA~~~~~~~~~~~~~~~~L~~i~~~i~~~ 178 (179)
T 1mjn_A 150 FASKPASEFVKILDTFEKLKDLCTELQKK 178 (179)
T ss_dssp GSCSCHHHHEEEESSGGGSCCHHHHHHHH
T ss_pred HhCCccHhcEEEeCCHHHHHHHHHHHHhh
Confidence 9998877 467788888887766665443
No 17
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=99.73 E-value=1e-17 Score=191.47 Aligned_cols=177 Identities=19% Similarity=0.191 Sum_probs=138.6
Q ss_pred CCCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhc---CCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCC
Q 004469 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA 399 (751)
Q Consensus 323 ~~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L---~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a 399 (751)
..+.+++||||.||||.+.+++.+|+++..+++.| +++++|+|+.|+++.+...+.. .....+.+.+.+.|+++.+
T Consensus 7 ~~~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~~l~-~~~~~~~~~~~~~l~~l~~ 85 (509)
T 2odp_A 7 SGHLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLMSVL-NDNSRDMTEVISSLENANY 85 (509)
T ss_dssp SSEEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEECTT-SGGGGCHHHHHHHHHTCCG
T ss_pred CCCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeEecc-CCCCCCHHHHHHHHHhccc
Confidence 35789999999999999999999999999999998 7899999999999988766532 2233456667777777776
Q ss_pred C-----CCCchHHHHHHHHHHhhcC-----------CCCccEEEEEecCCCCC---hhhHHHHHHHHhhc--cCCCCCeE
Q 004469 400 G-----GGTNILLPLKQAIKLLSDT-----------SESIPLIFLITDGTVGD---ERGICNEIKSYLTN--TRSISPRI 458 (751)
Q Consensus 400 ~-----GgT~l~~aL~~A~~~l~~~-----------~~~~~~IiLlTDG~~~~---~~~i~~~v~~~~~~--~~~~~~rI 458 (751)
. |||++..||+.|++++... ....+.|||+|||..++ .....+.+++.+.. .+..+++|
T Consensus 86 ~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 165 (509)
T 2odp_A 86 KDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYLDI 165 (509)
T ss_dssp GGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSCTHHHHHHHHHHTTCCSTTGGGEEE
T ss_pred ccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCCChhHHHHHHHHHhhccccccCceEE
Confidence 5 9999999999999988431 02346899999998864 33444555544321 11345899
Q ss_pred EEEEecCC-CCHHHHHHHHHhCCCE--EEEeCCCccHHHHHHHHH
Q 004469 459 CTFGVGLY-CNHYFLQILAQIGRGY--YDSAYDPGSVDYRIRRFF 500 (751)
Q Consensus 459 ft~GiG~~-~n~~lL~~LA~~ggG~--~~~i~~~~~l~~~l~~~l 500 (751)
|+||+|.. .|...|+.||..++|. ++.+.+.+++...+.+++
T Consensus 166 ~~iGvG~~~~~~~~L~~iA~~~~G~~~~~~~~~~~~l~~~~~~i~ 210 (509)
T 2odp_A 166 YAIGVGKLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHML 210 (509)
T ss_dssp EEEEESSSCCCHHHHHHHSCCCTTCCCEEEESSHHHHHHHHHHHE
T ss_pred EEEEcCCCcccHHHHHhhccCCCCceeeEEecCHHHHHHHHHhhh
Confidence 99999998 9999999999999997 888888888877666654
No 18
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=99.72 E-value=4.1e-17 Score=160.36 Aligned_cols=146 Identities=19% Similarity=0.195 Sum_probs=104.1
Q ss_pred CCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcC---CCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCC-C
Q 004469 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV-A 399 (751)
Q Consensus 324 ~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~-a 399 (751)
.+.+++||||.||||.+.+++.+|+++..+++.|. ++++|+|+.|+++.....+.. .....+.+.+.+.|+.+. .
T Consensus 16 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~~l~-~~~~~~~~~~~~~i~~l~~~ 94 (178)
T 2xgg_A 16 NQLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQWDLQ-SPNAVDKQLAAHAVLDMPYK 94 (178)
T ss_dssp TCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTT-SGGGSCHHHHHHHHHHCCCC
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEEeCC-CCCccCHHHHHHHHHhCCCC
Confidence 37999999999999999999999999999999996 358999999999988665532 222225566667777776 5
Q ss_pred CCCCchHHHHHHHHHHhhc-----CCCCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHH
Q 004469 400 GGGTNILLPLKQAIKLLSD-----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQI 474 (751)
Q Consensus 400 ~GgT~l~~aL~~A~~~l~~-----~~~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~ 474 (751)
+|+|++..||+.|.+.+.. .++..+.|||+|||..++...+...++.. .+ .+++||+||+|..+|..+|+.
T Consensus 95 ~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~~~~~~~~~~~l-~~---~gi~v~~igvG~~~~~~~l~~ 170 (178)
T 2xgg_A 95 KGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDSDFRTVRAAKEI-RE---LGGIVTVLAVGHYVAAALVPR 170 (178)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCHHHHHSHHHHHH-HH---TTCEEEEEECC----------
T ss_pred CCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCCCccHHHHHHHH-HH---CCCEEEEEEcCCcCCHHHHhc
Confidence 6999999999999997532 12456799999999988653333333322 22 358999999999999988874
No 19
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=99.72 E-value=6.6e-20 Score=181.72 Aligned_cols=173 Identities=20% Similarity=0.241 Sum_probs=126.1
Q ss_pred CCCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhc-CCCCcEEEEEeCC-ceEEeeccccccCHhHHHHHHHHHhcCCCC
Q 004469 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL-NPQDSFNIIAFNG-ETHLFSSSMKLASQGTIINATQWLSSLVAG 400 (751)
Q Consensus 323 ~~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L-~~~d~f~Ii~F~~-~~~~~~~~~~~~t~~~i~~a~~~I~~l~a~ 400 (751)
..+.+++||||+||||.|.+++.+|+++..++..+ .++++++|+.|++ ......+. + .+...+.++|+.+.++
T Consensus 3 ~~~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~----~-~~~~~~~~~i~~l~~~ 77 (189)
T 2x31_A 3 MSDRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQVLLQP----S-RSLTQTKRQLQGLPGG 77 (189)
T ss_dssp SSCCEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCCBCTTT----C-SCHHHHHHHHHHCCCC
T ss_pred CCCeEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCceEecCC----C-CCHHHHHHHHhcCCCC
Confidence 46799999999999999999999999999999888 8899999999997 45443332 2 2566777888999999
Q ss_pred CCCchHHHHHHHHHHhhcCC--CCccEEEEEecCCCCChhhH-------HHHHHHHhhccCCCCCeEEEEEecCCCCHHH
Q 004469 401 GGTNILLPLKQAIKLLSDTS--ESIPLIFLITDGTVGDERGI-------CNEIKSYLTNTRSISPRICTFGVGLYCNHYF 471 (751)
Q Consensus 401 GgT~l~~aL~~A~~~l~~~~--~~~~~IiLlTDG~~~~~~~i-------~~~v~~~~~~~~~~~~rIft~GiG~~~n~~l 471 (751)
|+|++..+|+.|++.+.... +..+.|||+|||.++....- ...+...+......++++|+||+|.. +..+
T Consensus 78 g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~ig~g~~-~~~~ 156 (189)
T 2x31_A 78 GGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTANRELAGEQATKVARAIRASGMPAVIIDTAMR-PNPA 156 (189)
T ss_dssp BCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTHHHHHGGGTCCCEEEEECTGGGGSCCTHHHHHHS-SCSS
T ss_pred CCCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCCCCCccccccchhHHHHHHHHHHHHcCCeEEEEecCCC-CHHH
Confidence 99999999999999887532 34679999999998643110 00001111111223478999999987 7789
Q ss_pred HHHHHHhCCCEEEEeCCCccHHHHHHHHHHHh
Q 004469 472 LQILAQIGRGYYDSAYDPGSVDYRIRRFFTAA 503 (751)
Q Consensus 472 L~~LA~~ggG~~~~i~~~~~l~~~l~~~l~~~ 503 (751)
|+.||+.++|.|+++.+ .-.+.+.++++.+
T Consensus 157 L~~iA~~~~G~~~~~~~--~~~~~~~~~~~~~ 186 (189)
T 2x31_A 157 LVDLARTMDAHYIALPR--ATAHKMADVLGAA 186 (189)
T ss_dssp SCSTTTEEEESSTTTHH--HHHHHHHHHHHHC
T ss_pred HHHHHHhcCCeEEECCC--cchHHHHHHHHHh
Confidence 99999999999877632 2234455555543
No 20
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=99.71 E-value=4.3e-17 Score=185.65 Aligned_cols=180 Identities=18% Similarity=0.232 Sum_probs=136.3
Q ss_pred CceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcC---CCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCC---
Q 004469 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV--- 398 (751)
Q Consensus 325 ~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~--- 398 (751)
+.+++||||.||||.+.+++.+|+++..+++.|. .+++++|+.|+++.+...+... ....+.+.+.+.|+++.
T Consensus 1 ~~div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~ 79 (497)
T 1rrk_A 1 SMNIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSE-ADSSNADWVTKQLNEINYED 79 (497)
T ss_dssp CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTS-GGGGCHHHHHHHHHHCCGGG
T ss_pred CeeEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEeecccc-ccccCHHHHHHHHHhCcCcc
Confidence 4689999999999999999999999999998754 5799999999999876553211 12233455555566555
Q ss_pred --CCCCCchHHHHHHHHHHhhcC--------CCCccEEEEEecCCCCC---hhhHHHHHHHHhh------ccCCCCCeEE
Q 004469 399 --AGGGTNILLPLKQAIKLLSDT--------SESIPLIFLITDGTVGD---ERGICNEIKSYLT------NTRSISPRIC 459 (751)
Q Consensus 399 --a~GgT~l~~aL~~A~~~l~~~--------~~~~~~IiLlTDG~~~~---~~~i~~~v~~~~~------~~~~~~~rIf 459 (751)
.+|+|++..||+.|.+.+... +...+.|||+|||..+. .....+.+++... +....+++||
T Consensus 80 ~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 159 (497)
T 1rrk_A 80 HKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVY 159 (497)
T ss_dssp SCCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCC-CCCGGGEEEE
T ss_pred ccccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCCChhHHHHHHHHHhhhhcccccchhcCeeEE
Confidence 458999999999999998432 12456899999999873 3344444444311 1122358999
Q ss_pred EEEecCCCCHHHHHHHHHhCCC--EEEEeCCCccHHHHHHHHHHHhcc
Q 004469 460 TFGVGLYCNHYFLQILAQIGRG--YYDSAYDPGSVDYRIRRFFTAASS 505 (751)
Q Consensus 460 t~GiG~~~n~~lL~~LA~~ggG--~~~~i~~~~~l~~~l~~~l~~~~~ 505 (751)
+||+|...|...|+.||..++| +++.+.+.+++...+.++++....
T Consensus 160 ~igvG~~~~~~~L~~iA~~~~g~~~~~~~~~~~~l~~~~~~~i~~~~~ 207 (497)
T 1rrk_A 160 VFGVGPLVNQVNINALASKKDNEQHVCKVKDMECLEDVFYQMIDESQS 207 (497)
T ss_dssp EEECSSSCCHHHHHHHSCCCTTCCCEEETTCHHHHHHHHHHHSCGGGG
T ss_pred EecCCCccCHHHHHHHhcCCCCcceEEEeCCHHHHhhhhhhcccCCCC
Confidence 9999999999999999999999 999999888888888877665543
No 21
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=99.71 E-value=4.5e-17 Score=194.60 Aligned_cols=187 Identities=19% Similarity=0.240 Sum_probs=146.4
Q ss_pred CCCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcC---CCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCC-
Q 004469 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV- 398 (751)
Q Consensus 323 ~~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~- 398 (751)
..+.||+||||.||||.+.+++.+|+++..+++.|. .++||+|+.|++++....+. ...+..+.+.+++.|+++.
T Consensus 241 ~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~~l-~~~~~~~~~~~~~~i~~l~~ 319 (741)
T 3hrz_D 241 SGSMNIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKV-SEADSSNADWVTKQLNEINY 319 (741)
T ss_dssp TCEEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECT-TSGGGGCHHHHHHHHTTCCG
T ss_pred CCceeEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeEee-cccCCcCHHHHHHHHHhccc
Confidence 347899999999999999999999999999998886 46899999999998876653 2344456677778888887
Q ss_pred ----CCCCCchHHHHHHHHHHhhcC--------CCCccEEEEEecCCCC---ChhhHHHHHHHHh------hccCCCCCe
Q 004469 399 ----AGGGTNILLPLKQAIKLLSDT--------SESIPLIFLITDGTVG---DERGICNEIKSYL------TNTRSISPR 457 (751)
Q Consensus 399 ----a~GgT~l~~aL~~A~~~l~~~--------~~~~~~IiLlTDG~~~---~~~~i~~~v~~~~------~~~~~~~~r 457 (751)
++|||++..||+.|++.+... .+..+.|||||||..+ +.....+.+++.. ......+++
T Consensus 320 ~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p~~~~~~i~~~~~~~~~a~~~~~~gi~ 399 (741)
T 3hrz_D 320 EDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLD 399 (741)
T ss_dssp GGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCTTCCCGGGEE
T ss_pred ccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCCCchHHHHHHHHHhhcccccccccccCee
Confidence 789999999999999988321 1234589999999876 3333444444321 122345689
Q ss_pred EEEEEecCCCCHHHHHHHHHhCCC--EEEEeCCCccHHHHHHHHHHHhccceEee
Q 004469 458 ICTFGVGLYCNHYFLQILAQIGRG--YYDSAYDPGSVDYRIRRFFTAASSVFLTN 510 (751)
Q Consensus 458 Ift~GiG~~~n~~lL~~LA~~ggG--~~~~i~~~~~l~~~l~~~l~~~~~p~l~d 510 (751)
||+||+|.++|...|+.||..++| +++.+.+.++|.+.+.++++++....+..
T Consensus 400 i~~igvG~~~~~~~L~~ia~~~~g~~~~~~~~~~~~L~~~~~~l~~~~~~~~~CG 454 (741)
T 3hrz_D 400 VYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQSLSLCG 454 (741)
T ss_dssp EEEEECSSSCCHHHHHHHSCCCTTCCCEECBSSHHHHHHHHHHHHHHHSCTTSTT
T ss_pred EEEEeCCCcCCHHHHHHHhcCCCCcceEEEeCCHHHHHHHHHHhhcccccccccc
Confidence 999999999999999999999999 48888988999999999888876544443
No 22
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=99.53 E-value=4.2e-15 Score=182.98 Aligned_cols=176 Identities=18% Similarity=0.169 Sum_probs=132.3
Q ss_pred CCCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCCC-CcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCC-CC
Q 004469 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQ-DSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV-AG 400 (751)
Q Consensus 323 ~~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~~-d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~-a~ 400 (751)
..+.||+||||.||||.+.+++.+|+++..+++.|.+. ++|+|+.|+++++...+.....+.+.+.++ |+.+. .+
T Consensus 128 ~~~~DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~~~~lt~~~~~~~l~~a---i~~i~~~g 204 (1095)
T 3k6s_A 128 RQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSL---LASVHQLQ 204 (1095)
T ss_dssp CCCEEEEEEEECCTTSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEEEECSHHHHSCSCGGGG---TTTCCCCC
T ss_pred CCCccEEEEEcCCCCCChhHHHHHHHHHHHHHHhccccccEEEEEEECCeEEEEecCcccCCHHHHHHH---Hhhhhccc
Confidence 34789999999999999999999999999999999874 899999999998876654322233344444 55553 45
Q ss_pred CCCchHHHHHHHHHHhhcC-----CCCccEEEEEecCCCC-ChhhHHHHHHHHhhccCCCCCeEEEEEecCC----CCHH
Q 004469 401 GGTNILLPLKQAIKLLSDT-----SESIPLIFLITDGTVG-DERGICNEIKSYLTNTRSISPRICTFGVGLY----CNHY 470 (751)
Q Consensus 401 GgT~l~~aL~~A~~~l~~~-----~~~~~~IiLlTDG~~~-~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~----~n~~ 470 (751)
|+|++..||+.|++.+... ++..+.|||+|||..+ +...+.+.++... + .+++||+||+|+. .|..
T Consensus 205 G~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d~~~~~~~a~~~r-~---~GI~i~aIGVG~~~~~~~d~~ 280 (1095)
T 3k6s_A 205 GFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMAD-A---AGIIRYAIGVGLAFQNRNSWK 280 (1095)
T ss_dssp SCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSCSSCHHHHHHHHH-H---HCEEECCEEBSSGGGSTTSSH
T ss_pred CCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCCchhHHHHHHHHH-H---CCCEEEEEecccccccccCHH
Confidence 9999999999998865321 2345689999999984 4333333333322 1 2589999999997 6889
Q ss_pred HHHHHHHhCCC-EEEEeCCCccHHHHHHHHHHHhcc
Q 004469 471 FLQILAQIGRG-YYDSAYDPGSVDYRIRRFFTAASS 505 (751)
Q Consensus 471 lL~~LA~~ggG-~~~~i~~~~~l~~~l~~~l~~~~~ 505 (751)
.|+.||..++| +++.+.+.+++...+.++.+++..
T Consensus 281 eL~~IAs~p~g~~vf~v~d~~~L~~i~~~L~~~Ic~ 316 (1095)
T 3k6s_A 281 ELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFA 316 (1095)
T ss_dssp HHHTTSCSSTTTSCCCBSCSGGGGSSTTTHHHHHHT
T ss_pred HHHHHHcCCCCceEEEcCCHHHHHHHHHHhhhhhhc
Confidence 99999998876 777788888887777777666643
No 23
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.48 E-value=4.5e-13 Score=138.94 Aligned_cols=156 Identities=12% Similarity=0.078 Sum_probs=117.6
Q ss_pred eEEEEEcCCCCCCC-----ChHHHHHHHHHHHHH---hcCCCCcEEEEEeCCc-eEEeeccccccCHhHHHHHHHHHhcC
Q 004469 327 DVVFLVDVSGSMQG-----VLLEQTKNALSASLS---KLNPQDSFNIIAFNGE-THLFSSSMKLASQGTIINATQWLSSL 397 (751)
Q Consensus 327 ~vvfviD~SgSM~g-----~~i~~aK~al~~~L~---~L~~~d~f~Ii~F~~~-~~~~~~~~~~~t~~~i~~a~~~I~~l 397 (751)
.+|||||.|+||.. .+++.+|+|+..+++ .++|.++++||+|.+. ...+.+.. .+...++..|+.+
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl~plT-----~D~~~il~aL~~l 79 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFT-----AEFGKILAGLHDT 79 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEEEEEE-----SCHHHHHHHHTTC
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceeccCCc-----chHHHHHHHhhhc
Confidence 48999999999975 489999999998887 4578999999999765 44544321 2345667778899
Q ss_pred CCCCCCchHHHHHHHHHHhhcC--CCCccEEEEEecCCCC-ChhhHHHHHHHHhhccCCCCCeEEEEEecC-CCCHHHHH
Q 004469 398 VAGGGTNILLPLKQAIKLLSDT--SESIPLIFLITDGTVG-DERGICNEIKSYLTNTRSISPRICTFGVGL-YCNHYFLQ 473 (751)
Q Consensus 398 ~a~GgT~l~~aL~~A~~~l~~~--~~~~~~IiLlTDG~~~-~~~~i~~~v~~~~~~~~~~~~rIft~GiG~-~~n~~lL~ 473 (751)
.++|+|++..+|+.|+..+... ......||++|||..+ ++..+...+++..+ .+++|++||||. ..|...|+
T Consensus 80 ~~~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~~~~~l~~lak~lkk----~gI~v~vIgFG~~~~n~~kLe 155 (268)
T 4b4t_W 80 QIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKK----NNVAVDIINFGEIEQNTELLD 155 (268)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHH----HTEEEEEEEESSCCSSCCHHH
T ss_pred CcCCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCCCCHHHHHHHHHHHHH----cCCEEEEEEeCCCccchHHHH
Confidence 9999999999999999998754 3345689999999875 44555555555543 248999999996 56788999
Q ss_pred HHHHhCCC------EEEEeCCCcc
Q 004469 474 ILAQIGRG------YYDSAYDPGS 491 (751)
Q Consensus 474 ~LA~~ggG------~~~~i~~~~~ 491 (751)
.+++..+| ++..+.....
T Consensus 156 ~l~~~~Ng~~~~~s~~v~v~~g~~ 179 (268)
T 4b4t_W 156 EFIAAVNNPQEETSHLLTVTPGPR 179 (268)
T ss_dssp HHHHHHCSSTTTSCEEEEECCCSS
T ss_pred HHHHHhcCCCCCceeEEEeCCCCc
Confidence 99988765 3455555433
No 24
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=99.46 E-value=2.7e-12 Score=127.64 Aligned_cols=156 Identities=14% Similarity=0.125 Sum_probs=111.4
Q ss_pred ceEEEEEcCCCCCCC-----ChHHHHHHHHHHHHHh---cCCCCcEEEEEeCCc-eEEeeccccccCHhHHHHHHHHHhc
Q 004469 326 KDVVFLVDVSGSMQG-----VLLEQTKNALSASLSK---LNPQDSFNIIAFNGE-THLFSSSMKLASQGTIINATQWLSS 396 (751)
Q Consensus 326 ~~vvfviD~SgSM~g-----~~i~~aK~al~~~L~~---L~~~d~f~Ii~F~~~-~~~~~~~~~~~t~~~i~~a~~~I~~ 396 (751)
..++|++|.|+||.. .+++.+|+++..++.. .+++|+++|++|+++ .....+.. . +.......++.
T Consensus 3 e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~~plT--~---d~~~i~~~L~~ 77 (192)
T 2x5n_A 3 EATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLT--R---DYGKFLSAMHD 77 (192)
T ss_dssp EEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEEEEEE--S---CHHHHHHHHTT
T ss_pred eEEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEecCCC--C---CHHHHHHHHHc
Confidence 568999999999973 4899999998887654 368899999999984 66554432 2 35566666788
Q ss_pred CCCCCCCchHHHHHHHHHHhhcCCC--Cc-cEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCCC-CHHHH
Q 004469 397 LVAGGGTNILLPLKQAIKLLSDTSE--SI-PLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYC-NHYFL 472 (751)
Q Consensus 397 l~a~GgT~l~~aL~~A~~~l~~~~~--~~-~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~-n~~lL 472 (751)
+.+.|+|++..||..|.+.++.... .. +.|||++|+...++..+.+.++...+ .+++|+++|+|... |.. |
T Consensus 78 l~~~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~~~~~~~~~~~a~~lk~----~gi~v~~Ig~G~~~~~~~-l 152 (192)
T 2x5n_A 78 LPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKK----NNVAIDIIHIGELQNESA-L 152 (192)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHH----TTEEEEEEEESCC---CH-H
T ss_pred CCCCCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCCCCCchhHHHHHHHHHH----CCCEEEEEEeCCCCccHH-H
Confidence 8899999999999999999876431 22 34666666654445555444443322 35899999999864 446 9
Q ss_pred HHHHHhC----CCEEEEeCCCcc
Q 004469 473 QILAQIG----RGYYDSAYDPGS 491 (751)
Q Consensus 473 ~~LA~~g----gG~~~~i~~~~~ 491 (751)
+.+|+.+ +++|..+.+...
T Consensus 153 ~~la~~~n~~~~s~~~~~~~~~~ 175 (192)
T 2x5n_A 153 QHFIDAANSSDSCHLVSIPPSPQ 175 (192)
T ss_dssp HHHHHHHCSTTCCEEEEECCCSS
T ss_pred HHHHHhccCCCceEEEEecCcch
Confidence 9999983 456766666553
No 25
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=99.34 E-value=4.1e-12 Score=152.49 Aligned_cols=114 Identities=22% Similarity=0.301 Sum_probs=87.0
Q ss_pred CCCCceEEEEEcCCCCCCCCh------HHHHHHHHHHHHHhcC--CCCcEEEEEeCCceEE---------eec-------
Q 004469 322 KVFRKDVVFLVDVSGSMQGVL------LEQTKNALSASLSKLN--PQDSFNIIAFNGETHL---------FSS------- 377 (751)
Q Consensus 322 ~~~~~~vvfviD~SgSM~g~~------i~~aK~al~~~L~~L~--~~d~f~Ii~F~~~~~~---------~~~------- 377 (751)
...+.+++||||.||||.+.+ ++.+|+++..+++.|. ++|||+||.|++++.. +.+
T Consensus 221 ~~~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~~~~~~~v~~~~~~~~g~~~n 300 (893)
T 2ww8_A 221 KSVPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIFDGTEFTVEKGVADKNGKRLN 300 (893)
T ss_dssp TTCCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBCBSCEEEEECCEECTTCCEEC
T ss_pred cCCCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCccccccccccccccccccccccc
Confidence 457899999999999999874 7889999999998875 5899999999986532 000
Q ss_pred --------------c-------ccccCHhHHHHHHHHHhc----------CCCCCCCchHHHHHHHHHHhhc-C-CCCcc
Q 004469 378 --------------S-------MKLASQGTIINATQWLSS----------LVAGGGTNILLPLKQAIKLLSD-T-SESIP 424 (751)
Q Consensus 378 --------------~-------~~~~t~~~i~~a~~~I~~----------l~a~GgT~l~~aL~~A~~~l~~-~-~~~~~ 424 (751)
. ....+.+++..+.++|.. +.+.|||++..||..|++++.. . +...+
T Consensus 301 ~~~~w~~~~t~~t~~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~~~~~~~~~k 380 (893)
T 2ww8_A 301 DSLFWNYDQTSFTTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQARQNSQK 380 (893)
T ss_dssp CCTTSCTTCCEEEEECCBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHHSCSSSEE
T ss_pred cccccccccccccccccccccccccCCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHHhhcccCCCe
Confidence 0 001234566666777764 4557999999999999999963 2 35667
Q ss_pred EEEEEecCCCC
Q 004469 425 LIFLITDGTVG 435 (751)
Q Consensus 425 ~IiLlTDG~~~ 435 (751)
.|||||||.++
T Consensus 381 vIILLTDG~pt 391 (893)
T 2ww8_A 381 VIFHITDGVPT 391 (893)
T ss_dssp EEEEEESSCCS
T ss_pred EEEEEcCCCCC
Confidence 99999999975
No 26
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=99.21 E-value=2.6e-11 Score=139.41 Aligned_cols=134 Identities=18% Similarity=0.219 Sum_probs=91.8
Q ss_pred CCCceEEEEEcCCCCCCC----ChHHHHHHHHHHHHHhcCCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCC
Q 004469 323 VFRKDVVFLVDVSGSMQG----VLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV 398 (751)
Q Consensus 323 ~~~~~vvfviD~SgSM~g----~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~ 398 (751)
..+.+++|++|+||||.+ .+++..+.|+...+..+.++|+++|+.|++..... +. . ...++.++++.+..+
T Consensus 366 ~~~~~v~lvvD~SgSM~~~~~~~~l~~~~~Aa~l~~~~~~~~d~vglv~Fs~~~~~~-~~-t--~~~~l~~~l~~l~~~- 440 (538)
T 1yvr_A 366 PTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDEMLPC-PI-T--VNMLLHEVVEKMSDI- 440 (538)
T ss_dssp CCCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHCSSEEEEEESSSEECC-SC-C--TTSCHHHHHHHHTTC-
T ss_pred CCCceEEEEEECccccCCCCCCCcHHHHHHHHHHHHHHhccCCceEEEEECCCceEc-CC-C--CcccHHHHHHHHhcC-
Confidence 457899999999999985 24555333344445555678999999999854432 11 1 123488888888865
Q ss_pred CCCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCCCh-hhHHHHHHHHhhccCCCCCeEEEEEecCC
Q 004469 399 AGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDE-RGICNEIKSYLTNTRSISPRICTFGVGLY 466 (751)
Q Consensus 399 a~GgT~l~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~-~~i~~~v~~~~~~~~~~~~rIft~GiG~~ 466 (751)
++|||++..+|..|++. ....+.|||+|||..+.. ....+.+++..... +..+++|+||+|+.
T Consensus 441 ~~GgT~i~~aL~~a~~~----~~~~~~iIliTDg~~~~g~~~~~~~l~~~~~~~-~~~v~l~~igig~~ 504 (538)
T 1yvr_A 441 TMGSTDCALPMLWAQKT----NTAADIFIVFTDCETNVEDVHPATALKQYREKM-GIPAKLIVCAMTSN 504 (538)
T ss_dssp CCSCCCTTHHHHHHHHT----TCCCSEEEEEECCCCCSSSCCHHHHHHHHHHHH-TCCCEEEEEECSSS
T ss_pred CCCCCcHHHHHHHHHhc----cCCCCEEEEEcCCCCCCCCCCHHHHHHHHHHHh-CCCcEEEEEEecCC
Confidence 67999999999999875 234579999999987643 22333333332221 23578899999974
No 27
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=99.03 E-value=7.4e-10 Score=127.91 Aligned_cols=153 Identities=15% Similarity=0.146 Sum_probs=108.3
Q ss_pred ceEEEEEcCCCCCCC------ChHHHHHHHHHHHHHh---cCCCCcEEEEEeCCceE--------------Eeecccccc
Q 004469 326 KDVVFLVDVSGSMQG------VLLEQTKNALSASLSK---LNPQDSFNIIAFNGETH--------------LFSSSMKLA 382 (751)
Q Consensus 326 ~~vvfviD~SgSM~g------~~i~~aK~al~~~L~~---L~~~d~f~Ii~F~~~~~--------------~~~~~~~~~ 382 (751)
..++|+||+|+||.. .+++.+++++..++++ .+++|+++||.|+++.. .+.+ +...
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~y~~i~vl~~-l~~~ 86 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRH-LMLP 86 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEE-EECC
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccCCCceEEeec-CCCC
Confidence 689999999999964 4899999999999984 68999999999998752 1111 1223
Q ss_pred CHhHHHHHHHHHhc-CCCC-CCCchHHHHHHHHHHhhcC--CC--CccEEEEEecCCCCC-hhhHHHHHHHHhhccCCCC
Q 004469 383 SQGTIINATQWLSS-LVAG-GGTNILLPLKQAIKLLSDT--SE--SIPLIFLITDGTVGD-ERGICNEIKSYLTNTRSIS 455 (751)
Q Consensus 383 t~~~i~~a~~~I~~-l~a~-GgT~l~~aL~~A~~~l~~~--~~--~~~~IiLlTDG~~~~-~~~i~~~v~~~~~~~~~~~ 455 (751)
+.+.+ +.|.. +..+ ++|+|..||..|.+++... .. ..+.|||+|||..+. .......++.. . ..+
T Consensus 87 ~~~~l----~~l~~~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~~~~~~~~a~~l-~---~~g 158 (565)
T 1jey_B 87 DFDLL----EDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSL-K---KCD 158 (565)
T ss_dssp CHHHH----HHHHTTCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCCTTHHHHHHHH-H---HTT
T ss_pred CHHHH----HHHHhhccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCCHHHHHHHHHHH-H---hcC
Confidence 33333 33554 6665 7999999999999998653 21 347999999998652 22333333333 2 235
Q ss_pred CeEE-EEEecCC--------------------------------CCHHHHHHHHHhCCC-----EEEEeC
Q 004469 456 PRIC-TFGVGLY--------------------------------CNHYFLQILAQIGRG-----YYDSAY 487 (751)
Q Consensus 456 ~rIf-t~GiG~~--------------------------------~n~~lL~~LA~~ggG-----~~~~i~ 487 (751)
++|+ ++|+|.. .|..+|+.||+.++| .++.+.
T Consensus 159 I~i~~vig~g~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~e~~L~~ia~~~~G~~~~s~~~~~~ 228 (565)
T 1jey_B 159 ISLQFFLPFSLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEGEDGLDEIYSFS 228 (565)
T ss_dssp EEEEEEESSCCC----------CCCCTTCSSCCCCTTTSCHHHHHHHHHHHHHHHHHHCGGGGGGEEEHH
T ss_pred cEEEEEeccCCCcCCcccccccccccccccccccchhccccchhhhHHHHHHHHHhcCCCcccceeecHH
Confidence 8999 8888753 124569999999999 777654
No 28
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=98.96 E-value=1.3e-09 Score=124.90 Aligned_cols=151 Identities=19% Similarity=0.193 Sum_probs=98.6
Q ss_pred CCCceEEEEEcCCCCCCC-C-----hHHHHHHHHHHHHHhcCCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhc
Q 004469 323 VFRKDVVFLVDVSGSMQG-V-----LLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSS 396 (751)
Q Consensus 323 ~~~~~vvfviD~SgSM~g-~-----~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~ 396 (751)
..+.++++++|+||||.+ . ++..+..|+...+-.+..+|++.|+.|++...... . .....+.++++.+..
T Consensus 360 ~~~~~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la~~~~r~~d~v~lv~Fs~~~~~~~--~--~~~~~l~~~l~~l~~ 435 (535)
T 2nvo_A 360 PANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMSLIALRTEPDALTMGFAEQFRPLG--I--TPRDTLESAMQKAQS 435 (535)
T ss_dssp CCCSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHHHHHHHHSSEEEEEEEBSSEEECC--C--CTTCCHHHHHHHTCC
T ss_pred CCCceEEEEEECCccccCCCCCCCCcccHHHHHHHHHHHHcCcCCceEEEEECCcceEcC--C--CcchhHHHHHHHHhh
Confidence 356899999999999986 2 23333333333344455688999999999654332 1 123556677777754
Q ss_pred CCCCCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCCChh-hHHHHHHHHhhccCCCCCeEEEEEecCC---------
Q 004469 397 LVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDER-GICNEIKSYLTNTRSISPRICTFGVGLY--------- 466 (751)
Q Consensus 397 l~a~GgT~l~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~~-~i~~~v~~~~~~~~~~~~rIft~GiG~~--------- 466 (751)
.. +|||++..+|+.+.+.. .....|||+|||+.+... ...+.++..... ....++++++|+|+.
T Consensus 436 ~~-~ggTdi~~~l~~a~~~~----~~~~~vIliTD~~~~~g~~~~~~al~~~r~~-~~~~~klv~i~l~~~~~~~~~~~~ 509 (535)
T 2nvo_A 436 VS-FGGTDCAQPILWAAQER----LDVDTFVVYTDNETWAGQVHPTVALDQYAQK-MGRAPKLIVVGLTATEFSIADPQR 509 (535)
T ss_dssp SS-BCCCCTTHHHHHHHHTT----CCCSEEEEEESSCCCCCSSCHHHHHHHHHHH-HSCCCEEEEEETTCSCCCCSCTTC
T ss_pred CC-CCCccHHHHHHHHHHhc----CCCCEEEEEeCCCccCCCCCHHHHHHHHHHh-hCCCCeEEEEeccCCCcccCCCCC
Confidence 32 69999999998886542 345789999999876432 233334333322 123589999999873
Q ss_pred --------CCHHHHHHHHHhCCCEE
Q 004469 467 --------CNHYFLQILAQIGRGYY 483 (751)
Q Consensus 467 --------~n~~lL~~LA~~ggG~~ 483 (751)
.|...|+.||+.++|.|
T Consensus 510 ~~~~~i~g~se~~l~~Ia~~~~G~~ 534 (535)
T 2nvo_A 510 RDMLDVVGFDAAAPNVMTAFARGEV 534 (535)
T ss_dssp SSEEEEEECCTTHHHHHHHHHTTCC
T ss_pred CCceeeeCCCHHHHHHHHHHhCCCc
Confidence 23456777777777765
No 29
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=98.79 E-value=3.8e-09 Score=107.01 Aligned_cols=92 Identities=24% Similarity=0.247 Sum_probs=70.6
Q ss_pred CCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcC---CCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCCC
Q 004469 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG 400 (751)
Q Consensus 324 ~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a~ 400 (751)
.+.+++||||+||||. .+++.+|+++..++.++. ..++|+||.|+++.......+.+.+... .+...+..+.++
T Consensus 133 ~~~~vvfLVDtSgSM~-~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~~~--~~~~~l~~L~ag 209 (242)
T 3rag_A 133 VALHLVVCLDTSASMR-DKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSSEV--NVAALEAELVAR 209 (242)
T ss_dssp SCEEEEEEEECSGGGT-TTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEESSC--CHHHHHHHCCCC
T ss_pred CCCCEEEEEECcccHH-HHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCChH--HHHHHHhhCCCC
Confidence 6789999999999998 599999999999998875 4789999999987521110011122222 345567788999
Q ss_pred CCCchHHHHHHHHHHhhc
Q 004469 401 GGTNILLPLKQAIKLLSD 418 (751)
Q Consensus 401 GgT~l~~aL~~A~~~l~~ 418 (751)
|+|.+..||..|++++..
T Consensus 210 G~Tplg~AL~~A~~~~~~ 227 (242)
T 3rag_A 210 GGTPTGPAIDHAADLLLS 227 (242)
T ss_dssp SCCCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 999999999999998853
No 30
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=98.62 E-value=2.1e-07 Score=108.28 Aligned_cols=136 Identities=15% Similarity=0.171 Sum_probs=93.1
Q ss_pred ceEEEEEcCCCCCCC-------ChHHHHHHHHHHHHHhc---CCCCcEEEEEeCCceE----------EeeccccccCHh
Q 004469 326 KDVVFLVDVSGSMQG-------VLLEQTKNALSASLSKL---NPQDSFNIIAFNGETH----------LFSSSMKLASQG 385 (751)
Q Consensus 326 ~~vvfviD~SgSM~g-------~~i~~aK~al~~~L~~L---~~~d~f~Ii~F~~~~~----------~~~~~~~~~t~~ 385 (751)
-.++|+||+|+||.. .+++.+++.+..++++. .++|+++||.|+++.. .+.+ +...+.+
T Consensus 36 e~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~v~~~-L~~~~~~ 114 (609)
T 1jey_A 36 DSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQE-LDNPGAK 114 (609)
T ss_dssp EEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEEEE-EECCCHH
T ss_pred eEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeEEEec-CCCCCHH
Confidence 449999999999964 37999999999999863 6789999999999862 2222 2334444
Q ss_pred HHHHHHHHHh--------c-CCCCCCCchHHHHHHHHHHhhcCCC--CccEEEEEecCCCCChh------hHHHHHHHHh
Q 004469 386 TIINATQWLS--------S-LVAGGGTNILLPLKQAIKLLSDTSE--SIPLIFLITDGTVGDER------GICNEIKSYL 448 (751)
Q Consensus 386 ~i~~a~~~I~--------~-l~a~GgT~l~~aL~~A~~~l~~~~~--~~~~IiLlTDG~~~~~~------~i~~~v~~~~ 448 (751)
.+....+.++ . +....+|++..||..|.+++..... ..+.|||||||...... .....+ +.+
T Consensus 115 ~ik~l~~l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~~~~~~~~~~~~~~a-~~l 193 (609)
T 1jey_A 115 RILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKA-GDL 193 (609)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTTCHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHhhcccchhhhhhcCCCCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCCCCchHHHHHHHHHH-HHH
Confidence 4444333221 0 1114689999999999999976422 36799999999864221 222222 222
Q ss_pred hccCCCCCeEEEEEecCC
Q 004469 449 TNTRSISPRICTFGVGLY 466 (751)
Q Consensus 449 ~~~~~~~~rIft~GiG~~ 466 (751)
.. .+++|++||||..
T Consensus 194 ~~---~gI~i~~igig~~ 208 (609)
T 1jey_A 194 RD---TGIFLDLMHLKKP 208 (609)
T ss_dssp HH---HTEEEEEEEBCCT
T ss_pred Hh---cCcEEEEEecCCC
Confidence 22 3589999999975
No 31
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=98.32 E-value=0.00011 Score=87.89 Aligned_cols=298 Identities=13% Similarity=0.121 Sum_probs=165.9
Q ss_pred EEeCCCCCCCCCCCceEEEEEcCCCCCCC-ChHHHHHHHHHHHHHhcCC---CCcEEEEEeCCceEEee--cccc-----
Q 004469 312 YLFPGKSQSRKVFRKDVVFLVDVSGSMQG-VLLEQTKNALSASLSKLNP---QDSFNIIAFNGETHLFS--SSMK----- 380 (751)
Q Consensus 312 ~l~P~~~~~~~~~~~~vvfviD~SgSM~g-~~i~~aK~al~~~L~~L~~---~d~f~Ii~F~~~~~~~~--~~~~----- 380 (751)
++.|.......+.|--++||||+|.++.. .-++.+++++...|+.|++ +.+|+||+|++.++.+. ....
T Consensus 174 y~~p~~y~~~~p~pp~yvFvIDvs~~av~~g~l~~~~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~~~~~g~k~~ 253 (810)
T 1pcx_A 174 YMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEES 253 (810)
T ss_dssp EECCGGGCSSCCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEECCCGGGC----
T ss_pred EEcCchhccCCCCCcEEEEEEECChHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCccccCcccc
Confidence 33443322233467789999999987632 2477899999999999986 57999999999987652 1100
Q ss_pred ---------------------------ccCHhHHHHHHHHHhcCC---CCCCCchHHHHHHHHHHhhcCCCCccEEEEEe
Q 004469 381 ---------------------------LASQGTIINATQWLSSLV---AGGGTNILLPLKQAIKLLSDTSESIPLIFLIT 430 (751)
Q Consensus 381 ---------------------------~~t~~~i~~a~~~I~~l~---a~GgT~l~~aL~~A~~~l~~~~~~~~~IiLlT 430 (751)
.-..+.+..+++.|..+. ..+.+.++.||+.|..++... --.|++++
T Consensus 254 ~~q~~mlvv~dl~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~~---GGrI~~F~ 330 (810)
T 1pcx_A 254 ADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV---GGKIIVVS 330 (810)
T ss_dssp ---CEEECCCCTTCC-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTT---CEEEEEEE
T ss_pred ccchhhccccccccccCCCcccccccHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhc---CCEEEEEe
Confidence 001345566666666432 247889999999999998752 24788999
Q ss_pred cCCCCCh------hh-------------H-------HHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHHhCCCEEE
Q 004469 431 DGTVGDE------RG-------------I-------CNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYD 484 (751)
Q Consensus 431 DG~~~~~------~~-------------i-------~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~~ggG~~~ 484 (751)
+|.++.. ++ . .+.+...+. ...+.+.+|.++ ++.++-..|..|++.+||..+
T Consensus 331 sg~pt~GpG~l~~r~~~~~~~~~ke~~~l~~~a~~fY~~la~~~~-~~gi~VDlF~~s-~~~~dla~l~~l~~~TGG~v~ 408 (810)
T 1pcx_A 331 GTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCS-KVQITVDLFLAS-EDYMDVASLSNLSRFTAGQTH 408 (810)
T ss_dssp SSCCCSSTTCCCC--------------------CCHHHHHHHHHH-HTTEEEEEEEEE-SSCCCHHHHHHHHHTTTCCEE
T ss_pred cCCCCCCCCcccccccccccCcccchhhhcccchHHHHHHHHHHH-HCCeEEEEEEcc-CCccChHHHHHHHhcCCcEEE
Confidence 9876511 00 0 111111111 123445666665 456789999999999999987
Q ss_pred EeCCCcc--HHH--HHHHHHH-HhccceEeeEEEE--eecCCCceeecC---------CCCCcccCCCcEEEEEEEcCCC
Q 004469 485 SAYDPGS--VDY--RIRRFFT-AASSVFLTNMTLE--TSKHLNSLELFP---------SHIPDFCLECPLIVSGRYSGNF 548 (751)
Q Consensus 485 ~i~~~~~--l~~--~l~~~l~-~~~~p~l~di~l~--~~~~~~~~ev~p---------~~ip~l~~g~~l~v~G~~~g~~ 548 (751)
+..+... ..+ ++.+-+. .+..+...+..++ ...++.....+. -.++.+..++.+.+.-.+.++.
T Consensus 409 ~y~~F~~~~~~d~~~f~~dl~~~l~~~~gf~a~mrVR~S~gl~v~~~~G~~~~~~~~~~~l~~~~~d~s~~v~f~~~~~l 488 (810)
T 1pcx_A 409 FYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESI 488 (810)
T ss_dssp EEETCCTTSHHHHHHHHHHHHHHHHCCCCEEEEEEEEECTTEEEEEEESSSBCSSSSEEEESSCCSSCCEEEEEEECSCC
T ss_pred EcCCCcchhhHHHHHHHHHHHHHhhhhcceeEEEEEEcCCCeEEEEeecCccccCcCceEeecCCCCCEEEEEEEeccCC
Confidence 7765432 111 2322222 2222332233332 222221111111 1246667777777777776653
Q ss_pred Cc-E--E--EEEEEec-Ccc---eEEEEEecccc--------CCCchhHHHHHHHHHHHHHhhhhccCHHHHHHHHHHHH
Q 004469 549 GD-S--V--QVSGTMA-DTS---NFIIELKAQNA--------KDIPLDRLLARRQIEILTAQAWFSESKELEEKVAKMSI 611 (751)
Q Consensus 549 ~~-~--v--~l~g~~~-~~~---~~~~~l~~~~~--------~~~~l~~lwA~~~I~~L~~~~~~~~~~~~k~eii~LS~ 611 (751)
+. . + .+..+.. |++ -.++.+++... +-..+.-++||..+..........-.+.+.+.++++-.
T Consensus 489 ~~~~~~~Q~allYt~~~G~RRiRV~T~~~~vt~~~~~v~~~~Dqea~~~llar~av~~~~~~~~~d~r~~l~~~li~il~ 568 (810)
T 1pcx_A 489 MADYCYVQVAVLLSLNNSQRRIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILA 568 (810)
T ss_dssp CSSEEEEEEEEEEECTTSCEEEEEEEEEEEEESCHHHHHHTBCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEEEEEcCCCCEEEEEEecCccccCCHHHHHHhcCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 32 1 2 2222222 222 23333443321 11134456676666555443222234566777788777
Q ss_pred hhC
Q 004469 612 QTG 614 (751)
Q Consensus 612 ~y~ 614 (751)
.|+
T Consensus 569 ~Yr 571 (810)
T 1pcx_A 569 TYK 571 (810)
T ss_dssp HHH
T ss_pred HHh
Confidence 775
No 32
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=98.21 E-value=0.00046 Score=82.01 Aligned_cols=164 Identities=15% Similarity=0.081 Sum_probs=105.9
Q ss_pred CCCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCceEEeeccc-----------------------
Q 004469 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSM----------------------- 379 (751)
Q Consensus 323 ~~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~----------------------- 379 (751)
+.|--++||||+|.+. ..++.+++++...|+.|+++.+++||+|++.++.+.-..
T Consensus 130 p~pp~~vFvIDvS~~a--~~l~~l~~si~~~L~~Lp~~~~VGlITf~~~v~~y~l~~~~~~~~~vf~G~k~~~~~q~~~m 207 (769)
T 2nut_A 130 QMPLIFLYVVDTCMED--EDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEM 207 (769)
T ss_dssp CCCCEEEEEEECCSCH--HHHHHHHHHHHHHHTTSCTTCEEEEEEESSEEEEEESSCCSSCEEEEEETTSCCCSHHHHHH
T ss_pred CCCCEEEEEEECCccH--HHHHHHHHHHHHHHHhCCCCceEEEEEeCCEEEEEeCCCCCCccceeecCCccccHHHHHHH
Confidence 3567899999999874 578999999999999999999999999999987643110
Q ss_pred cccC-----------------------------HhHHHHHHHHHhc-C---C--CCCCCchHHHHHHHHHHhhcC-CCCc
Q 004469 380 KLAS-----------------------------QGTIINATQWLSS-L---V--AGGGTNILLPLKQAIKLLSDT-SESI 423 (751)
Q Consensus 380 ~~~t-----------------------------~~~i~~a~~~I~~-l---~--a~GgT~l~~aL~~A~~~l~~~-~~~~ 423 (751)
...+ ...+..+++.|.. + . ..+.+.+..||+.|..++... .+.-
T Consensus 208 l~v~d~~~~~~~~~~~~~f~~p~~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~~~G 287 (769)
T 2nut_A 208 LGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTG 287 (769)
T ss_dssp HC-------------------CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSCSSC
T ss_pred hCCCCcccccccccccccCCCcccceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcccCCC
Confidence 1011 0122333333332 1 0 147789999999999999731 1223
Q ss_pred cEEEEEecCCCCC--------hh---------------hH-------HHHHHHHhhccCCCCCeEEEEEecCCCCHHHHH
Q 004469 424 PLIFLITDGTVGD--------ER---------------GI-------CNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ 473 (751)
Q Consensus 424 ~~IiLlTDG~~~~--------~~---------------~i-------~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~ 473 (751)
-.|++++.|.++. +. .. .+.+...+.+ ..+.+.+|+++. +.++-..|.
T Consensus 288 GrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~-~gi~VDlF~~~~-~~vdla~l~ 365 (769)
T 2nut_A 288 ARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAAT-TGHVIDIYACAL-DQTGLLEMK 365 (769)
T ss_dssp CEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHH-HTCEEEEEEECS-SCCCHHHHT
T ss_pred cEEEEEeCCCCCCCCCCCcCcccccccccccccccchhhhccchHHHHHHHHHHHHH-CCeEEEEEeccC-CccChHHHH
Confidence 5788888887641 00 00 1111111111 123344555442 457899999
Q ss_pred HHHHhCCCEEEEeCCCc
Q 004469 474 ILAQIGRGYYDSAYDPG 490 (751)
Q Consensus 474 ~LA~~ggG~~~~i~~~~ 490 (751)
.|++.+||..++..+..
T Consensus 366 ~l~~~TGG~~~~~~~F~ 382 (769)
T 2nut_A 366 CCPNLTGGYMVMGDSFN 382 (769)
T ss_dssp HHHHHSSCCEEEESCSS
T ss_pred HHhhcCCceEEEcCCCc
Confidence 99999999998877654
No 33
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=98.14 E-value=0.00027 Score=85.13 Aligned_cols=298 Identities=13% Similarity=0.118 Sum_probs=164.5
Q ss_pred EEeCCCCCCCCCCCceEEEEEcCCCCCCC-ChHHHHHHHHHHHHHhcCC---CCcEEEEEeCCceEEeecc---------
Q 004469 312 YLFPGKSQSRKVFRKDVVFLVDVSGSMQG-VLLEQTKNALSASLSKLNP---QDSFNIIAFNGETHLFSSS--------- 378 (751)
Q Consensus 312 ~l~P~~~~~~~~~~~~vvfviD~SgSM~g-~~i~~aK~al~~~L~~L~~---~d~f~Ii~F~~~~~~~~~~--------- 378 (751)
++.|.....+.+.|--++||||+|.+... .-++.+++++...|+.|++ +.+|+||+|++.++.+.-.
T Consensus 290 yi~p~ey~~r~p~ppvyvFvIDvS~~av~~g~l~~l~~sI~~~L~~LP~~~~~~~VGlITFds~Vh~y~l~~~~~g~k~~ 369 (926)
T 1m2v_B 290 YMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEES 369 (926)
T ss_dssp EECCGGGCSSCCCCCBEEEEEECSHHHHHSCHHHHHHHHHHHTTTTSCCTTSCCEECEEEESSSEEEEECCCC-------
T ss_pred EEcChhhccCCCCCcEEEEEEECCHHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCCcccCCccc
Confidence 34444322233467789999999977532 2477899999999999986 5799999999998755210
Q ss_pred -----------------------ccc--cCHhHHHHHHHHHhcCC---CCCCCchHHHHHHHHHHhhcCCCCccEEEEEe
Q 004469 379 -----------------------MKL--ASQGTIINATQWLSSLV---AGGGTNILLPLKQAIKLLSDTSESIPLIFLIT 430 (751)
Q Consensus 379 -----------------------~~~--~t~~~i~~a~~~I~~l~---a~GgT~l~~aL~~A~~~l~~~~~~~~~IiLlT 430 (751)
+++ -..+.++.+++.|..+. ....+.+..||+.|+.++... --.|++++
T Consensus 370 ~~q~qmlvvsdl~d~f~P~~~~~Lv~l~e~~~~I~~lLe~L~~~~~~~~~~~~~~G~AL~aA~~lL~~~---GGrI~~F~ 446 (926)
T 1m2v_B 370 ADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV---GGKIIVVS 446 (926)
T ss_dssp --CCEEEEECCCSSCCCSCSSSSSEETTTTHHHHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTTT---CEEEEEEE
T ss_pred ccchhhccccccccccCCCcccccccHHHHHHHHHHHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHhh---CCEEEEEe
Confidence 000 12345666766666432 247889999999999999752 24788888
Q ss_pred cCCCCCh------------------hh--------HHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHHhCCCEEE
Q 004469 431 DGTVGDE------------------RG--------ICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYD 484 (751)
Q Consensus 431 DG~~~~~------------------~~--------i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~~ggG~~~ 484 (751)
.|.++-. .. ..+.+...+.+ ..+.+.||.++ .+.++-..|..|++.+||..+
T Consensus 447 sg~Pt~GpG~l~~re~~~~~~~~ke~~~ll~~a~~FYk~LA~~~~~-~gisVDlF~~s-~~~vdla~l~~l~~~TGG~v~ 524 (926)
T 1m2v_B 447 GTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSK-VQITVDLFLAS-EDYMDVASLSNLSRFTAGQTH 524 (926)
T ss_dssp SSCCCSSTTCCCCCCC----CCTTHHHHHTSCSSTHHHHHHHHHHH-HTEEEEEEEEE-SSCCCHHHHHHHHHTTTCCEE
T ss_pred cCCCCCCCCcccccccccccCcccchhhhccchHHHHHHHHHHHHH-cCeEEEEEEcc-CCCcChHHHHHHHhcCCceEE
Confidence 8876410 00 01111111111 13445677666 456799999999999999987
Q ss_pred EeCCCcc--HH--HHHHHHH-HHhccceEeeEEEEe--ecCCCceeecCC---------CCCcccCCCcEEEEEEEcCCC
Q 004469 485 SAYDPGS--VD--YRIRRFF-TAASSVFLTNMTLET--SKHLNSLELFPS---------HIPDFCLECPLIVSGRYSGNF 548 (751)
Q Consensus 485 ~i~~~~~--l~--~~l~~~l-~~~~~p~l~di~l~~--~~~~~~~ev~p~---------~ip~l~~g~~l~v~G~~~g~~ 548 (751)
+..+... .. .++.+-+ +.+..+...+..++. ..++.....+-. .++.+..++.+.+.-.+.++.
T Consensus 525 ~y~~F~~~~~~d~~kf~~dl~~~Lt~~~gf~a~mrVR~S~glkv~~~~G~~~~~~s~~~~l~~l~~d~s~av~f~~~~~l 604 (926)
T 1m2v_B 525 FYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESI 604 (926)
T ss_dssp EEESCCTTSHHHHHHHHHHHHHHHHSCCEEEEEEEEEECTTEEEEEEESSSBCSSTTEEEEEEECSSCCEEEEEEECSBC
T ss_pred EcCCCcchhhhHHHHHHHHHHHHhhhhhceeEEEEEEeCCCcEEEEeecCccccCcCceEeeccCCCCEEEEEEEeccCC
Confidence 7655432 11 1233222 223333333333332 222221111111 234455566666666665443
Q ss_pred Cc-E--E--EEEEEec-Ccc---eEEEEEecccc--------CCCchhHHHHHHHHHHHHHhhhhccCHHHHHHHHHHHH
Q 004469 549 GD-S--V--QVSGTMA-DTS---NFIIELKAQNA--------KDIPLDRLLARRQIEILTAQAWFSESKELEEKVAKMSI 611 (751)
Q Consensus 549 ~~-~--v--~l~g~~~-~~~---~~~~~l~~~~~--------~~~~l~~lwA~~~I~~L~~~~~~~~~~~~k~eii~LS~ 611 (751)
+. . + .+..+.. |++ -.++.+++... +-..+.-++||..+.......+..-.+.+.+.++++-.
T Consensus 605 ~~~~~~~Q~allYT~~~G~RRiRV~T~~l~vt~~l~~v~~s~Dqea~~~llar~av~~~~~~~~~d~r~~L~~~li~il~ 684 (926)
T 1m2v_B 605 MADYCYVQVAVLLSLNNSQRRIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILA 684 (926)
T ss_dssp CSSEEEEEEEEEEEETTTEEEEEEEEEEEEEESCHHHHHHTBCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEEEEEcCCCCEEEEEEeecccccCCHHHHHHhcCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 21 1 1 1222222 222 23333333221 11134556677666655443222234566777888877
Q ss_pred hhC
Q 004469 612 QTG 614 (751)
Q Consensus 612 ~y~ 614 (751)
.|+
T Consensus 685 ~Yr 687 (926)
T 1m2v_B 685 TYK 687 (926)
T ss_dssp HHH
T ss_pred HHh
Confidence 775
No 34
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=98.00 E-value=0.0019 Score=76.73 Aligned_cols=164 Identities=18% Similarity=0.093 Sum_probs=106.2
Q ss_pred CCCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhcCCCCcEEEEEeCCceEEeecccc------------ccCH------
Q 004469 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMK------------LASQ------ 384 (751)
Q Consensus 323 ~~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L~~~d~f~Ii~F~~~~~~~~~~~~------------~~t~------ 384 (751)
+.|--++||||+|.+. ..++.+++++...|+.|+++.+|++|+|++.++.+.-... .++.
T Consensus 119 ~~pp~~vFvIDvs~~~--~~l~~l~~sl~~~L~~Lp~~~~VGlITf~~~V~~y~l~~~~~~~~~V~~g~k~~~~~q~~~~ 196 (768)
T 1m2o_A 119 TVPPIFFFVVDLTSET--ENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEM 196 (768)
T ss_dssp CSCCEEEEEEECCSCH--HHHHHHHHHHHHHHHTSCTTCEEEEEEESSEEEECCCSSSSSEEEEEEETTSCCCHHHHHHH
T ss_pred CCCCEEEEEEECCcCH--HHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEECCCCCCcceeeecCCccccHHHHHHH
Confidence 4567899999999886 4689999999999999999999999999998876431100 0000
Q ss_pred ------------------------------------hHHHHHHHHHhcCCC---------CCCCchHHHHHHHHHHhhcC
Q 004469 385 ------------------------------------GTIINATQWLSSLVA---------GGGTNILLPLKQAIKLLSDT 419 (751)
Q Consensus 385 ------------------------------------~~i~~a~~~I~~l~a---------~GgT~l~~aL~~A~~~l~~~ 419 (751)
+......+.++++.. ...+.+..||+.|..++...
T Consensus 197 l~~l~~~~~~~~~~~~~~~~f~p~~~~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~ 276 (768)
T 1m2o_A 197 LTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGC 276 (768)
T ss_dssp HHSCCCC---------------CCSSSGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHHH
T ss_pred HhhccccccCCccccccccccccccCCccceeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHHHHhhc
Confidence 011112233344333 25668999999999998731
Q ss_pred -CCCccEEEEEecCCCCC--------h-h--------------hHH-------HHHHHHhhccCCCCCeEEEEEecCCCC
Q 004469 420 -SESIPLIFLITDGTVGD--------E-R--------------GIC-------NEIKSYLTNTRSISPRICTFGVGLYCN 468 (751)
Q Consensus 420 -~~~~~~IiLlTDG~~~~--------~-~--------------~i~-------~~v~~~~~~~~~~~~rIft~GiG~~~n 468 (751)
.+..-.|++++.|.++. + . ... +.+...+.+ ..+.+.+|.++ .+.++
T Consensus 277 ~~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~-~gi~VDlF~~~-~~~~d 354 (768)
T 1m2o_A 277 YKNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAA-NGHTVDIFAGC-YDQIG 354 (768)
T ss_dssp CTTSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHH-HTCEEEEEEEC-SSCCS
T ss_pred cCCCCcEEEEEeCCCCCCCCccccccccccccccccccccchhhhcCchHHHHHHHHHHHHH-CCeEEEEEEcc-CCccC
Confidence 12235788899987641 0 0 000 111111111 23445566655 35678
Q ss_pred HHHHHHHHHhCCCEEEEeCCCc
Q 004469 469 HYFLQILAQIGRGYYDSAYDPG 490 (751)
Q Consensus 469 ~~lL~~LA~~ggG~~~~i~~~~ 490 (751)
-..|..|++.+||..++.....
T Consensus 355 la~l~~l~~~TGG~v~~y~~f~ 376 (768)
T 1m2o_A 355 MSEMKQLTDSTGGVLLLTDAFS 376 (768)
T ss_dssp HHHHHHHHHHHTCCEEEESCTT
T ss_pred hHHHhhHhhcCCceEEEcCCCc
Confidence 9999999999999988876654
No 35
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=97.96 E-value=0.0015 Score=77.26 Aligned_cols=289 Identities=12% Similarity=0.091 Sum_probs=160.7
Q ss_pred CCCCceEEEEEcCCC-CCCCChHHHHHHHHHHHHHhcCCCC--cEEEEEeCCceEEee--cc------------------
Q 004469 322 KVFRKDVVFLVDVSG-SMQGVLLEQTKNALSASLSKLNPQD--SFNIIAFNGETHLFS--SS------------------ 378 (751)
Q Consensus 322 ~~~~~~vvfviD~Sg-SM~g~~i~~aK~al~~~L~~L~~~d--~f~Ii~F~~~~~~~~--~~------------------ 378 (751)
.+.|--++||||+|- ++...-++.+++++...|+.|+++. +|++|+|++.++.+. +.
T Consensus 157 ~p~pp~yvFvIDvs~~a~~~g~l~~~~~sl~~~L~~lp~~~~~~VG~ITfd~~vh~y~l~~~~~~~qmlvv~dl~d~f~P 236 (751)
T 3eh1_A 157 PPQPAVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLPGDSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVFLP 236 (751)
T ss_dssp SCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSSCCTTCEEEEEEESSSEEEEECCTTCSSCEEEEESCTTCTTSC
T ss_pred CCCCcEEEEEEEccHhhhhhhHHHHHHHHHHHHHHhcCCCcCcEEEEEEeCCEEEEEECCCCcccceeeccccccccCCC
Confidence 356788999999984 2333457888999999999998765 899999999876432 10
Q ss_pred -----ccc--cCHhHHHHHHHHHhcCCCC---CCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCCCh---------h-
Q 004469 379 -----MKL--ASQGTIINATQWLSSLVAG---GGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDE---------R- 438 (751)
Q Consensus 379 -----~~~--~t~~~i~~a~~~I~~l~a~---GgT~l~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~~~---------~- 438 (751)
+++ -....++.+++.|..+... ..+.++.||+.|+.++... --.|++++.|.++-. .
T Consensus 237 ~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~~~~~~~~~G~AL~aA~~ll~~~---GGrI~~F~sg~pt~GpG~l~~r~~~~ 313 (751)
T 3eh1_A 237 TPDSLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSPT---GGRVSVFQTQLPSLGAGLLQSREDPN 313 (751)
T ss_dssp CGGGTSEETTTTHHHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTTT---CEEEEEEECSCCCSSTTCCCCCCCSC
T ss_pred ChhhhcccHHHHHHHHHHHHHhhhHhhcCCCCCccchHHHHHHHHHHhhcC---CCEEEEEecCCCCCCCCccccccccc
Confidence 001 1235666777766654333 4678899999999998642 346777888765411 0
Q ss_pred ---------------hHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHHhCCCEEEEeCCCcc-----HHHHHHH
Q 004469 439 ---------------GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGS-----VDYRIRR 498 (751)
Q Consensus 439 ---------------~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~~ggG~~~~i~~~~~-----l~~~l~~ 498 (751)
+..+.+...+.+ ..+.+.+|.++ .+.++-.-|..+++.+||..++...... -..++.+
T Consensus 314 ~~~~~ke~~~~~~a~~fY~~la~~~~~-~~i~VDlF~~s-~~~~dlatl~~l~~~TGG~v~~y~~F~~~~~~~~~~~f~~ 391 (751)
T 3eh1_A 314 QRSSTKVVQHLGPATDFYKKLALDCSG-QQTAVDLFLLS-SQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQK 391 (751)
T ss_dssp GGGGSSSCTTCSCSCSHHHHHHHHHHH-TTEEEEEEECC-SSCCCHHHHTHHHHTTTCCEEECTTCBTTTBHHHHHHHHH
T ss_pred cCCCchhhhhhcchHHHHHHHHHHHHh-cCceEEEEEcc-CcccChHhHHHHHhhcCceEEEeCCcccccchhHHHHHHH
Confidence 011222222211 22344555543 3467889999999999999988765431 1123322
Q ss_pred -HHHHhccceEeeEEEE--eecCCCceeecC---------CCCCcccCCCcEEEEEEEcCCCCc--E--EEE--EEEec-
Q 004469 499 -FFTAASSVFLTNMTLE--TSKHLNSLELFP---------SHIPDFCLECPLIVSGRYSGNFGD--S--VQV--SGTMA- 559 (751)
Q Consensus 499 -~l~~~~~p~l~di~l~--~~~~~~~~ev~p---------~~ip~l~~g~~l~v~G~~~g~~~~--~--v~l--~g~~~- 559 (751)
+.+.+..+.--+..++ ...++.....+. -.++.+-.++.+.+.-.+.++.+. . +.. ..+..
T Consensus 392 dl~r~l~~~~gf~a~mrVR~S~glkv~~~~G~~~~~~t~~~~l~~i~~d~s~~v~~~~~~~l~~~~~~~~Q~allYT~~~ 471 (751)
T 3eh1_A 392 DLKRYLTRKIGFEAVMRIRCTKGLSMHTFHGNFFVRSTDLLSLANINPDAGFAVQLSIEESLTDTSLVCFQTALLYTSSK 471 (751)
T ss_dssp HHHHHHHSCCEEEEEEEEEECTTEEEEEEESSSEECSSSEEEEEEECTTCCEEEEEEESSCCCSCSEEEEEEEEEEECTT
T ss_pred HHHHHHhhhhccceEEEEEecCCeEEEEeeCCeEeCCCCceEeccCCCCCEEEEEEEEcCCCCCCCceEEEEEEeeecCC
Confidence 2222223333332222 222221111111 124555566667776667665431 1 221 12222
Q ss_pred Ccc---eEEEEEecccc--------CCCchhHHHHHHHHHHHHHhhhhccCHHHHHHHHHHHHhhCC
Q 004469 560 DTS---NFIIELKAQNA--------KDIPLDRLLARRQIEILTAQAWFSESKELEEKVAKMSIQTGV 615 (751)
Q Consensus 560 ~~~---~~~~~l~~~~~--------~~~~l~~lwA~~~I~~L~~~~~~~~~~~~k~eii~LS~~y~i 615 (751)
|++ -.++.+++... +-..+..++||..+..........-.+.+.+.++++-.+|+-
T Consensus 472 G~RRiRV~T~~l~vt~~~~~v~~~~DqeA~~~llar~av~~~~~~~l~d~r~~l~~~li~il~~Yr~ 538 (751)
T 3eh1_A 472 GERRIRVHTLCLPVVSSLADVYAGVDVQAAICLLANMAVDRSVSSSLSDARDALVNAVVDSLSAYGS 538 (751)
T ss_dssp SCEEEEEEEEEEEEECSHHHHHHTBCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEEecccccCCHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 222 23333443221 112345566776666554432222345667788888888864
No 36
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=97.96 E-value=2.4e-05 Score=79.24 Aligned_cols=79 Identities=13% Similarity=0.070 Sum_probs=56.8
Q ss_pred CCccEEEEEecCCCCChhhHHHHHHHHhhccCCCCCeEEEEEecCC-----CCHHHHHHHHHhCCCEEEEeCCCccHHHH
Q 004469 421 ESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLY-----CNHYFLQILAQIGRGYYDSAYDPGSVDYR 495 (751)
Q Consensus 421 ~~~~~IiLlTDG~~~~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~-----~n~~lL~~LA~~ggG~~~~i~~~~~l~~~ 495 (751)
...+.|||||||..+......+..+.+ .+ .+++||+||||+. .+...|+.||..|||.|+.+.. +++.+.
T Consensus 8 ~~~k~iillTDG~~~~g~~p~~aa~~a-~~---~gi~v~tIGig~~~~~~~~~~~~L~~IA~~tGG~yf~a~~-~~l~~~ 82 (242)
T 3rag_A 8 ATIRQILVITDGCSNIGPDPVEAARRA-HR---HGIVVNVIGIVGRGDAGEQGYQEAHSIADAGGGMCRIVQP-ADISAT 82 (242)
T ss_dssp CCEEEEEEEESSCCCSSSCHHHHHHHH-HH---TTCEEEEEEECCSSSCTTCCCHHHHHHHHHTTSCEEEECG-GGHHHH
T ss_pred CCccEEEEEccCCCCCCCCHHHHHHHH-HH---CCCEEEEEEecCCccccchhHHHHHHHHHhcCCeEEEeeH-HHHHHH
Confidence 457899999999976433344444333 22 3589999999753 2357899999999999999854 777777
Q ss_pred HHHHHHHhc
Q 004469 496 IRRFFTAAS 504 (751)
Q Consensus 496 l~~~l~~~~ 504 (751)
++.+-+++.
T Consensus 83 ~~~~t~~~~ 91 (242)
T 3rag_A 83 AQMMTHQTM 91 (242)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665553
No 37
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=97.74 E-value=0.00026 Score=82.76 Aligned_cols=190 Identities=15% Similarity=0.088 Sum_probs=112.3
Q ss_pred ceEEEEEeCCCCCCCCCCCceEEEEEcCCCCCCCChHHHHHHHHHHHH---HhcCCCCcEEEEEeCCceEE-ee----cc
Q 004469 307 QIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASL---SKLNPQDSFNIIAFNGETHL-FS----SS 378 (751)
Q Consensus 307 ~~f~l~l~P~~~~~~~~~~~~vvfviD~SgSM~g~~i~~aK~al~~~L---~~L~~~d~f~Ii~F~~~~~~-~~----~~ 378 (751)
..|.+.+.+.. ..|.|++||+|.|+||.. .|+.+|+....++ +.+..+-||++.+|.+.... +. ..
T Consensus 98 ~~f~~~~~~~~-----~~pvDly~LmD~S~SM~d-di~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~~P~~~~~p~~ 171 (690)
T 3fcs_B 98 KNFSIQVRQVE-----DYPVDIYYLMDLSYSMKD-DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPE 171 (690)
T ss_dssp EEEEEEEECCB-----TCCEEEEEEEECSGGGHH-HHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSSTTTSCCCSTT
T ss_pred EEEEEEEeccC-----CCCccEEEEecCCcchHH-HHHHHHHHHHHHHHHHHhhCcCceEEeEEeeccccCCccccChhh
Confidence 34666666543 367999999999999964 6777776655554 44567889999999885321 00 00
Q ss_pred c--------------------cccCHhHHHHHHHHHhcCCCCCCCc----hHHHHHHHH---HHhhcCCCCccEEEEEec
Q 004469 379 M--------------------KLASQGTIINATQWLSSLVAGGGTN----ILLPLKQAI---KLLSDTSESIPLIFLITD 431 (751)
Q Consensus 379 ~--------------------~~~t~~~i~~a~~~I~~l~a~GgT~----l~~aL~~A~---~~l~~~~~~~~~IiLlTD 431 (751)
+ +..-..++.+..+.|+.+...|+-+ -++||..|+ +.+.=+++..+.|||+||
T Consensus 172 ~~~~pc~~~~~~c~~~f~f~~~l~lt~~~~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rllv~~TD 251 (690)
T 3fcs_B 172 ALENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTD 251 (690)
T ss_dssp TTTCTTSSSSSCCCCCCSEEEEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEES
T ss_pred hccCCCcCCCCCCCCCccceeecccCCCHHHHHHHhhceeccCCCCCCchHHHHHHHHhhcccccCCCCCceEEEEEECC
Confidence 0 0011246777888888887776643 345555554 222212356789999999
Q ss_pred CCCC---Ch------------------------hh----HHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHHhC-
Q 004469 432 GTVG---DE------------------------RG----ICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIG- 479 (751)
Q Consensus 432 G~~~---~~------------------------~~----i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~~g- 479 (751)
.... +. .. .+..+.+.+.+.+ + ..||++-- ....+.+.|+..-
T Consensus 252 a~~H~agDg~l~gi~~pnd~~chl~~~~~y~~s~~~DypSi~ql~~~l~~~~-i-~~ifavt~---~~~~~y~~l~~~i~ 326 (690)
T 3fcs_B 252 AKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKN-I-NLIFAVTE---NVVNLYQNYSELIP 326 (690)
T ss_dssp SCBCCTTGGGGGTCCSCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHHHHHTT-C-EEEEEEEG---GGHHHHHHHHHHST
T ss_pred CccccCCCccccceecCCCcceeecCCCccccccccCCCCHHHHHHHHHHcC-C-eEEEEEeC---CchhhHHHHHhhcC
Confidence 8753 00 00 1334444444322 1 34666532 2345566676554
Q ss_pred CCEEEEe-CCCccHHHHHHHHHHHhccce
Q 004469 480 RGYYDSA-YDPGSVDYRIRRFFTAASSVF 507 (751)
Q Consensus 480 gG~~~~i-~~~~~l~~~l~~~l~~~~~p~ 507 (751)
++....+ .+..++.+.+.+.+.++.+.+
T Consensus 327 ~s~v~~l~~dSsni~~li~~~y~~i~s~v 355 (690)
T 3fcs_B 327 GTTVGVLSMDSSNVLQLIVDAYGKIRSKV 355 (690)
T ss_dssp TCEEEEECTTCTTHHHHHHHHHHHHTTCE
T ss_pred CceeeeeccccHHHHHHHHHHHHhhhcce
Confidence 4444333 445678888888888887544
No 38
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=97.67 E-value=0.00019 Score=71.63 Aligned_cols=106 Identities=20% Similarity=0.178 Sum_probs=71.0
Q ss_pred CCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhc---CCCCcEEEEEeCCceEEeeccccccCHhHHHHHHHHHhcCCCC
Q 004469 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG 400 (751)
Q Consensus 324 ~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L---~~~d~f~Ii~F~~~~~~~~~~~~~~t~~~i~~a~~~I~~l~a~ 400 (751)
.|.|++||+|.|+||.+ .++..|+.+..+.+.| ..+-||++.+|.+.. +.. ..+ -..+..+..+.|+++...
T Consensus 2 ~pvDl~fl~D~S~SM~~-di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~--~~~-~l~-lT~d~~~F~~~v~~~~vs 76 (212)
T 2iue_A 2 NSVDLYFLMGLSGSAQG-HLSNVQTLGSDLLKALNEISRSGRIGFGSIVNMT--FQH-ILK-LTADSSQFQRELRKQLVS 76 (212)
T ss_dssp CCEEEEEEEECCGGGTT-THHHHHHHHHHHHHHHHHHCSCEEEEEEEESSSC--EEE-EEE-EESCHHHHHHHHHTCCCC
T ss_pred CceEEEEEEeCCCcchh-HHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcCc--cee-cCC-cCCCHHHHHHHHhhcccc
Confidence 37899999999999976 5888888887776555 567899999998772 111 111 123456677778888777
Q ss_pred CCCc----hHHHHHHHHH---HhhcCCCCccEEEEEecCCCC
Q 004469 401 GGTN----ILLPLKQAIK---LLSDTSESIPLIFLITDGTVG 435 (751)
Q Consensus 401 GgT~----l~~aL~~A~~---~l~~~~~~~~~IiLlTDG~~~ 435 (751)
||-+ -..||..|+. .+.=.+ ..+.|||+||+.+.
T Consensus 77 g~~D~PE~g~dal~qa~~c~~~i~Wr~-a~rllvl~TDa~~H 117 (212)
T 2iue_A 77 GKLATPKGQLDAVVQVAICLGEIGWRN-GTRFLVLVTDNDFH 117 (212)
T ss_dssp CCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEECSSCBC
T ss_pred CCCCCCchHHHHHHHHHHhhhhcccCC-ccEEEEEECcCCcc
Confidence 6532 2445555542 111123 66899999999874
No 39
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=97.53 E-value=0.0089 Score=70.93 Aligned_cols=224 Identities=14% Similarity=0.157 Sum_probs=131.8
Q ss_pred CCCCceEEEEEcCCCC-CCCChHHHHHHHHHHHHHhcCCC-------CcEEEEEeCCceEEee--cc-------------
Q 004469 322 KVFRKDVVFLVDVSGS-MQGVLLEQTKNALSASLSKLNPQ-------DSFNIIAFNGETHLFS--SS------------- 378 (751)
Q Consensus 322 ~~~~~~vvfviD~SgS-M~g~~i~~aK~al~~~L~~L~~~-------d~f~Ii~F~~~~~~~~--~~------------- 378 (751)
.+.|--++||||+|-. ....-++.+++++...|+.|+++ .+|++|+|++.++.+. +.
T Consensus 174 ~p~pp~y~FvIDvs~~av~sg~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~q~q~~vv~d~~ 253 (770)
T 3efo_B 174 PPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDVG 253 (770)
T ss_dssp CCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEECCTT
T ss_pred CCCCcEEEEEEEcchhhccchHHHHHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCCCcccCceEEEecccc
Confidence 3467789999999854 44457889999999999999875 5999999999876432 00
Q ss_pred ----------ccc--cCHhHHHHHHHHHhcC---CCCCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCC-C-h----
Q 004469 379 ----------MKL--ASQGTIINATQWLSSL---VAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVG-D-E---- 437 (751)
Q Consensus 379 ----------~~~--~t~~~i~~a~~~I~~l---~a~GgT~l~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~-~-~---- 437 (751)
+++ -....++.+++.|..+ ....+|-+..||+.|+..+.... .--.|++++.|.++ . .
T Consensus 254 d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~-~GGkI~~F~s~lP~t~GpG~l~ 332 (770)
T 3efo_B 254 EVFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAAD-CPGKLFIFHSSLPTAEAPGKLK 332 (770)
T ss_dssp SCCCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHT-CCEEEEEEECSCCCSSSTTCCC
T ss_pred cccCCCccceeeeHHHHHHHHHHHHHhhHhhccCCCCCcchHHHHHHHHHHHhccCC-CCcEEEEEecCCCCcCCCcccc
Confidence 011 1234566666666543 23467888999999998886421 22366777666443 0 0
Q ss_pred --------------------hhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHHhCCCEEEEeCCCc--cHHHH
Q 004469 438 --------------------RGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPG--SVDYR 495 (751)
Q Consensus 438 --------------------~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~~ggG~~~~i~~~~--~l~~~ 495 (751)
.+..+.+.....+ ..+.+.+|.++ .+.++-.-|..+++.+||..++..+.. ...++
T Consensus 333 ~r~~~~~~~t~ke~~~~~~a~~fY~~lA~~~~~-~~i~VDlF~~s-~~~vdlatl~~l~~~TGG~v~~y~~F~~~~~~~~ 410 (770)
T 3efo_B 333 NRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVA-HGCSVTLFLFP-SQYVDVASLGLVPQLTGGTLYKYNNFQMHLDRQQ 410 (770)
T ss_dssp CCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHH-TTEEEEEEECC-SSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHH
T ss_pred ccccccccCCcchhhhhcchHHHHHHHHHHHHH-cCeEEEEEEec-CCccChHHHHHHHhhcCceEEEecCCcchhHHHH
Confidence 0111222222221 22345566554 346788999999999999998877653 22344
Q ss_pred HHHHHHHhc-cceEeeEEEE--eecCCCceeecC---------CCCCcccCCCcEEEEEEEcCCC
Q 004469 496 IRRFFTAAS-SVFLTNMTLE--TSKHLNSLELFP---------SHIPDFCLECPLIVSGRYSGNF 548 (751)
Q Consensus 496 l~~~l~~~~-~p~l~di~l~--~~~~~~~~ev~p---------~~ip~l~~g~~l~v~G~~~g~~ 548 (751)
+.+.+.+.. .+..-+..++ ...++.....+. -.++.+...+.+.+.-.+.++.
T Consensus 411 f~~dl~~~l~~~~gf~a~mrVR~S~gl~v~~~~G~~~~~~t~~~~l~~~~~d~s~~v~f~~~~~l 475 (770)
T 3efo_B 411 FLNDLRNDIEKKIGFDAIMRVRTSTGFRATDFFGGILMNNTTDVEMAAIDCDKAVTVEFKHDDKL 475 (770)
T ss_dssp HHHHHHHHHHSCEEEEEEEEEEECTTEEEEEEESSCBCSSSSCEEEEEEESSCCEEEEEEESSCC
T ss_pred HHHHHHHhhhhceeeeEEEEEEecCCeEEEEeECCeeCCCCCceEecccCcCceEEEEEEecCCC
Confidence 444444332 3333333332 222222111111 1345566667777776666553
No 40
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=97.41 E-value=0.016 Score=68.74 Aligned_cols=224 Identities=13% Similarity=0.141 Sum_probs=131.3
Q ss_pred CCCCceEEEEEcCCCC-CCCChHHHHHHHHHHHHHhcCCC-------CcEEEEEeCCceEEee--c--------------
Q 004469 322 KVFRKDVVFLVDVSGS-MQGVLLEQTKNALSASLSKLNPQ-------DSFNIIAFNGETHLFS--S-------------- 377 (751)
Q Consensus 322 ~~~~~~vvfviD~SgS-M~g~~i~~aK~al~~~L~~L~~~-------d~f~Ii~F~~~~~~~~--~-------------- 377 (751)
.+.|--++||||+|-. ....-++.+++++...|+.|+++ .+|++|+|++.++.+. +
T Consensus 170 ~p~pp~y~FvIDvs~~av~sg~l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~vv~dl~ 249 (766)
T 3eh2_A 170 FPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVA 249 (766)
T ss_dssp CCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEEECCTT
T ss_pred CCCCCEEEEEEECchhhccchHHHHHHHHHHHHHHhCCcccccCCccceEEEEEeCCEEEEEECCCCCCCceEEEecChh
Confidence 3457789999999853 33456889999999999999875 6899999999876432 0
Q ss_pred ---------cccc--cCHhHHHHHHHHHhcC---CCCCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCC--Ch----
Q 004469 378 ---------SMKL--ASQGTIINATQWLSSL---VAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVG--DE---- 437 (751)
Q Consensus 378 ---------~~~~--~t~~~i~~a~~~I~~l---~a~GgT~l~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~--~~---- 437 (751)
.+++ -....++.+++.|..+ ....+|-+..||+.|+..+... +..-.|++++.|.++ ..
T Consensus 250 d~f~P~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~-~~GGkI~~F~s~lP~t~GpG~l~ 328 (766)
T 3eh2_A 250 DMFVPLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAA-ECAGKLFLFHTSLPIAEAPGKLK 328 (766)
T ss_dssp TCCCCCCTTSSBCTTTTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHT-TCCEEEEEEECSCCCSSSTTCCC
T ss_pred hhccccccceeEeHHHHHHHHHHHHHhhhhhccCCCCCcchHHHHHHHHHHHhccC-CCCcEEEEEecCCCCcCCCcccc
Confidence 0111 1235666666666543 2347788999999999988643 223466777766443 00
Q ss_pred --------------------hhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHHhCCCEEEEeCCCcc--HHHH
Q 004469 438 --------------------RGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGS--VDYR 495 (751)
Q Consensus 438 --------------------~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~~ggG~~~~i~~~~~--l~~~ 495 (751)
.+..+.+...+.+ ..+.+.+|.++ .+.++-.-|..+++.+||..++..+... -.++
T Consensus 329 ~r~~~~~~~sdke~~~~~~a~~fY~~la~~~~~-~~i~VDlF~~s-~~~vdlatl~~l~~~TGG~v~~y~~F~~~~d~~~ 406 (766)
T 3eh2_A 329 NRDDRKLINTDKEKTLFQPQTGAYQTLAKECVA-QGCCVDLFLFP-NQYVDVATLSVVPQLTGGSVYKYASFQVENDQER 406 (766)
T ss_dssp CCCCGGGTTSTTGGGGTSCSSTHHHHHHHHHHH-HTEEEEEEECC-SSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHH
T ss_pred cccccccCCCcchhhhccchHHHHHHHHHHHHh-CCeEEEEEEec-CCCcChHHHHHHHhhcCceEEEeCCCcchhHHHH
Confidence 0111222222221 12345566554 3567899999999999999988776532 1233
Q ss_pred HHHHHHHhc-cceEeeEEEE--eecCCCceeecC---------CCCCcccCCCcEEEEEEEcCCC
Q 004469 496 IRRFFTAAS-SVFLTNMTLE--TSKHLNSLELFP---------SHIPDFCLECPLIVSGRYSGNF 548 (751)
Q Consensus 496 l~~~l~~~~-~p~l~di~l~--~~~~~~~~ev~p---------~~ip~l~~g~~l~v~G~~~g~~ 548 (751)
+.+.+.+.. .+..-+..++ ...++.....+. -.++.+-.++.+.+.-.+.++.
T Consensus 407 f~~dl~~~l~~~~gf~a~mrVR~S~glkv~~~~G~~~~~~t~~~~l~~i~~d~s~~v~f~~~~~l 471 (766)
T 3eh2_A 407 FLSDLRRDVQKVVGFDAVMRVRTSTGIRAVDFFGAFYMSNTTDVELAGLDGDKTVTVEFKHDDRL 471 (766)
T ss_dssp HHHHHHHHHHSCEEEEEEEEEEECTTEEEEEEEESCBCSSSSCEEEEEEETTCCEEEEEEESSCC
T ss_pred HHHHHHHHhhhcceeeEEEEEEecCCeEEEEeECCeecCCCCceeeccCCCCceEEEEEEecCCC
Confidence 444444333 3333333332 222222111111 1334555666676766666543
No 41
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=97.31 E-value=0.0039 Score=69.00 Aligned_cols=188 Identities=13% Similarity=0.065 Sum_probs=112.0
Q ss_pred eEEEEEeCCCCCCCCCCCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhc---CCCCcEEEEEeCCceE-Eee---c---
Q 004469 308 IFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETH-LFS---S--- 377 (751)
Q Consensus 308 ~f~l~l~P~~~~~~~~~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L---~~~d~f~Ii~F~~~~~-~~~---~--- 377 (751)
.|.+.+.+.. ..|.|++||+|.|+||.. .++..|+....+.+.| ..+-|+++.+|-+... .|. |
T Consensus 99 ~f~v~~~~~~-----~ypvDLy~LmDlS~SM~d-dl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v~P~~~~~p~~~ 172 (472)
T 3t3p_B 99 NFSIQVRQVE-----DYPVDIYYLMDLSYSMKD-DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEA 172 (472)
T ss_dssp EEEEEEECCS-----SCCEEEEEEEECSGGGHH-HHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCSHHH
T ss_pred EEEEEeecCC-----CCCceEEEEEccCcchHH-HHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeccccCccccCChhhh
Confidence 4555555443 368999999999999964 6777777776666555 4577999999987531 000 0
Q ss_pred ---------------c----ccccCHhHHHHHHHHHhcCCCCCCCch----HHHHHHHH---HHhhcCCCCccEEEEEec
Q 004469 378 ---------------S----MKLASQGTIINATQWLSSLVAGGGTNI----LLPLKQAI---KLLSDTSESIPLIFLITD 431 (751)
Q Consensus 378 ---------------~----~~~~t~~~i~~a~~~I~~l~a~GgT~l----~~aL~~A~---~~l~~~~~~~~~IiLlTD 431 (751)
. ..+. .++..+..+.|++....|+-+. .+||..|. +.+.=++...+.|||+||
T Consensus 173 l~nPc~~~~~~c~p~f~fr~~l~L-T~d~~~F~~~V~~~~iSGn~D~PEgg~dAl~qaavC~~~igWR~~a~rllV~~TD 251 (472)
T 3t3p_B 173 LENPCYDMKTTCLPMFGYKHVLTL-TDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTD 251 (472)
T ss_dssp HHCTTTTTTSCCCCCCSEEEEEEE-ESCHHHHHHHHHHCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEES
T ss_pred hcCCCcccccCCCCCcceeEeecc-CCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhcchhhcCCCCCceEEEEEECC
Confidence 0 0011 2467777888887777766433 44554444 222112345678999999
Q ss_pred CCCCC--------------------hh-----------hHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHHhCC
Q 004469 432 GTVGD--------------------ER-----------GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGR 480 (751)
Q Consensus 432 G~~~~--------------------~~-----------~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~~gg 480 (751)
..... .. ..+..+.+.+.+.+ -..||++- . ......+.|+..-.
T Consensus 252 a~~H~agDgkL~GIv~pnDg~CHL~~~~~Y~~s~~~DYPSv~ql~~~l~e~n--I~~IFAVt--~-~~~~~Y~~L~~~ip 326 (472)
T 3t3p_B 252 AKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKN--INLIFAVT--E-NVVNLYQNYSELIP 326 (472)
T ss_dssp SCBCCTTGGGGGTCCCCCCCCCCBCTTCBBTTTTTSCCCCHHHHHHHHHHTT--CEEEEEEC--G-GGHHHHHHHHHTST
T ss_pred CCcCcCCCccccceecCCCCceEECCCCcccccccCCCCCHHHHHHHHHhcC--ccEEEEEe--c-cchhHHHHHHHhCC
Confidence 86320 00 01334444444322 23577762 2 23456677877655
Q ss_pred CEE-EEe-CCCccHHHHHHHHHHHhccce
Q 004469 481 GYY-DSA-YDPGSVDYRIRRFFTAASSVF 507 (751)
Q Consensus 481 G~~-~~i-~~~~~l~~~l~~~l~~~~~p~ 507 (751)
|.. -.+ .+...+-+.+...+.++.+.+
T Consensus 327 ~s~vg~L~~dSsNiv~LI~~aY~~i~s~V 355 (472)
T 3t3p_B 327 GTTVGVLSMDSSNVLQLIVDAYGKIRSKV 355 (472)
T ss_dssp TCEEEECCTTSTTHHHHHHHHHHHHTTCE
T ss_pred CceeeeccccchhHHHHHHHHHHHhheEE
Confidence 543 333 445678888888888887654
No 42
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=97.23 E-value=0.00086 Score=78.19 Aligned_cols=188 Identities=16% Similarity=0.128 Sum_probs=106.6
Q ss_pred ceEEEEEeCCCCCCCCCCCceEEEEEcCCCCCCCChHHHHHHHHHHH---HHhcCCCCcEEEEEeCCceEE-eec-----
Q 004469 307 QIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSAS---LSKLNPQDSFNIIAFNGETHL-FSS----- 377 (751)
Q Consensus 307 ~~f~l~l~P~~~~~~~~~~~~vvfviD~SgSM~g~~i~~aK~al~~~---L~~L~~~d~f~Ii~F~~~~~~-~~~----- 377 (751)
..|.+.+.+.. ..|.|++||+|.|+||.. .|+.+|+....+ |+.+..+-||++.+|.+.... |..
T Consensus 91 ~~f~~~~~~~~-----~ypvDly~LmD~S~SM~d-di~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~ 164 (687)
T 3k6s_B 91 AAFNVTFRRAK-----GYPIDLYYLMDLSYSMLD-DLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDK 164 (687)
T ss_dssp EEEEEEECCCC-----CCCCEEEEEEECSSTTHH-HHHTTTTCCTTHHHHHHSSCCSCEEEEEEECCCSSTTSSCCSSTT
T ss_pred eEEEEEEeccC-----CCceeEEEEEcCCcchHH-HHHHHHHHHHHHHHHHHhhCcCcEEeeEEeeccccCCccccCchh
Confidence 35666666543 357999999999999964 566666654444 455667889999999884310 000
Q ss_pred -------------------cccccCHhHHHHHHHHHhcCCCCCCCch----HHHHHHHH---HHhhcCCCCccEEEEEec
Q 004469 378 -------------------SMKLASQGTIINATQWLSSLVAGGGTNI----LLPLKQAI---KLLSDTSESIPLIFLITD 431 (751)
Q Consensus 378 -------------------~~~~~t~~~i~~a~~~I~~l~a~GgT~l----~~aL~~A~---~~l~~~~~~~~~IiLlTD 431 (751)
...+ -..++.+..+.|+.....|+-+. .+||..|+ +.+.=+. ..+.|||+||
T Consensus 165 ~~~Pc~~~~~~c~~~f~f~~~l~-lt~~~~~F~~~v~~~~isgn~D~PE~g~dAl~qa~vc~~~igWr~-a~rllV~~TD 242 (687)
T 3k6s_B 165 LRNPCPNKEKECQPPFAFRHVLK-LTNNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWRN-VTRLLVFATD 242 (687)
T ss_dssp TTCCCCSCCCCCCCCCSCEEEEE-EESCSHHHHHHHHTSCCCCCSSSSCCHHHHHHHHTTCHHHHCCCS-SCCEEEEECS
T ss_pred ccCCCCCCCCCcCCcccceeecc-cCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhhcccccCCcc-ceEEEEEECC
Confidence 0001 12456677777887777766432 44554443 2221123 6789999999
Q ss_pred CCCCC---h-----------------------hh----HHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHHhC-C
Q 004469 432 GTVGD---E-----------------------RG----ICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIG-R 480 (751)
Q Consensus 432 G~~~~---~-----------------------~~----i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~~g-g 480 (751)
..... . .. .+..+.+.+.+.+ + ..||++-- ....+.+.|+..- +
T Consensus 243 a~~H~agDg~l~gi~~pndg~Chl~~~~y~~s~~~DyPS~~ql~~~l~~~~-I-~~ifavt~---~~~~~y~~l~~~i~~ 317 (687)
T 3k6s_B 243 DGFHFAGDGKLGAILTPNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAENN-I-QPIFAVTS---RMVKTYEKLTEIIPK 317 (687)
T ss_dssp SCCCCTTGGGGGTCCCCCCSCCCCSSSBCSSGGGSCCCCGGGHHHHHHHTT-C-BCCEEECG---GGHHHHHHHHHHSSS
T ss_pred CccccCCCccccceecCCCCccccCCCccccccccCCCCHHHHHHHHHHcC-C-eEEEEEec---cchhhHHHHHhhcCC
Confidence 87531 0 00 0223333333322 1 34666522 2345566676554 4
Q ss_pred CEEEEeC-CCccHHHHHHHHHHHhccce
Q 004469 481 GYYDSAY-DPGSVDYRIRRFFTAASSVF 507 (751)
Q Consensus 481 G~~~~i~-~~~~l~~~l~~~l~~~~~p~ 507 (751)
+....+. +..++.+.+...+.++.+.+
T Consensus 318 s~v~~L~~dSsni~~li~~ay~~i~s~v 345 (687)
T 3k6s_B 318 SAVGELSEDSSNVVQLIKNAYNKLSSRV 345 (687)
T ss_dssp CCEEECCTTCCSCGGGTTTHHHHHSSCC
T ss_pred ceeeeeccccHHHHHHHHHHHHhhhcee
Confidence 4444433 34557676777777776543
No 43
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=96.97 E-value=0.022 Score=62.58 Aligned_cols=187 Identities=14% Similarity=0.085 Sum_probs=110.7
Q ss_pred eEEEEEeCCCCCCCCCCCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhc---CCCCcEEEEEeCCceE-Eee-------
Q 004469 308 IFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETH-LFS------- 376 (751)
Q Consensus 308 ~f~l~l~P~~~~~~~~~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L---~~~d~f~Ii~F~~~~~-~~~------- 376 (751)
.|.+.+.+.. ..|.|++||+|.|+||.. .++..|+....+++.| ..+-|+++.+|-+... .|.
T Consensus 110 ~f~v~~~~~~-----~yPVDLyyLmDlS~SM~d-dl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v~P~~~t~p~~~ 183 (454)
T 3vi3_B 110 TFTLKFKRAE-----DYPIDLYYLMDLSYSMKD-DLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKL 183 (454)
T ss_dssp CEEEEEECCS-----CCCEEEEEEEECSGGGHH-HHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSSTTTSCCSTTTT
T ss_pred EEEEEEecCC-----CCceeEEEEecCCcchhh-HHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccCCcccCChHHh
Confidence 4555555443 368999999999999964 6777777766666555 4577999999987521 000
Q ss_pred --cc--------------ccccCHhHHHHHHHHHhcCCCCCCCch----HHHHHHHHH---HhhcCCCCccEEEEEecCC
Q 004469 377 --SS--------------MKLASQGTIINATQWLSSLVAGGGTNI----LLPLKQAIK---LLSDTSESIPLIFLITDGT 433 (751)
Q Consensus 377 --~~--------------~~~~t~~~i~~a~~~I~~l~a~GgT~l----~~aL~~A~~---~l~~~~~~~~~IiLlTDG~ 433 (751)
|. ..+. .++..+..++|++....|+-|. .+||-.|.- .+.=++ ..+.+||+||..
T Consensus 184 ~nPC~~~~~c~~~f~fr~~l~L-T~d~~~F~~~V~~~~isGn~D~PEgg~DAl~Qaavc~~~igWR~-a~rllV~~TDa~ 261 (454)
T 3vi3_B 184 RNPCTSEQNCTTPFSYKNVLSL-TNKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWRN-VTRLLVFSTDAG 261 (454)
T ss_dssp TCCSCSSSCCCCCCSEEEEEEE-ESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEEESSC
T ss_pred cCCCcCccCCCCCcceeeeeec-CCCHHHHHHHHhhccccCCCcCCchhHHHHHHHhccccccCCcc-ceEEEEEECCCC
Confidence 00 0011 1467778888998888766433 344443331 111112 567889999986
Q ss_pred CC---Ch---------------------------hhHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHHhCCCEE
Q 004469 434 VG---DE---------------------------RGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYY 483 (751)
Q Consensus 434 ~~---~~---------------------------~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~~ggG~~ 483 (751)
.. |. -..+..+.+.+.+.+ -..||++- .. ...+.+.|+..=.|..
T Consensus 262 fH~agDgkL~GIv~PNDg~CHL~~~~Yt~s~~~DYPSv~ql~~~l~e~n--I~~IFAVt--~~-~~~~Y~~L~~~ip~s~ 336 (454)
T 3vi3_B 262 FHFAGDGKLGGIVLPNDGQCHLENNMYTMSHYYDYPSIAHLVQKLSENN--IQTIFAVT--EE-FQPVYKELKNLIPKSA 336 (454)
T ss_dssp BCCTTTTGGGTCCSCCCCCCCEETTEECCTTTSCCCCHHHHHHHHHHTT--EEEEEEEE--GG-GHHHHHHHHHHSTTEE
T ss_pred cCcCCCccccceecCCCCccEeCCCcccccccCCCCCHHHHHHHHHhcC--CcEEEEEc--Cc-cchHHHHHHHhCCCce
Confidence 42 10 001334444444322 13467662 22 3456678887655543
Q ss_pred -EEe-CCCccHHHHHHHHHHHhccce
Q 004469 484 -DSA-YDPGSVDYRIRRFFTAASSVF 507 (751)
Q Consensus 484 -~~i-~~~~~l~~~l~~~l~~~~~p~ 507 (751)
-.. .+...+-+.+.+.+.++.+.+
T Consensus 337 vg~Ls~dSsNiv~LI~~aY~~i~S~V 362 (454)
T 3vi3_B 337 VGTLSANSSNVIQLIIDAYNSLSSEV 362 (454)
T ss_dssp EEEECTTCTTHHHHHHHHHHHHHTCE
T ss_pred eeEccccchhHHHHHHHHHHHhheEE
Confidence 333 445678888888888887654
No 44
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=96.76 E-value=0.035 Score=61.64 Aligned_cols=188 Identities=18% Similarity=0.140 Sum_probs=109.4
Q ss_pred ceEEEEEeCCCCCCCCCCCceEEEEEcCCCCCCCChHHHHHHHHHHHHHhc---CCCCcEEEEEeCCceEE-ee------
Q 004469 307 QIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHL-FS------ 376 (751)
Q Consensus 307 ~~f~l~l~P~~~~~~~~~~~~vvfviD~SgSM~g~~i~~aK~al~~~L~~L---~~~d~f~Ii~F~~~~~~-~~------ 376 (751)
..|.+.+.+.. ..|.|++||+|.|+||. ..++..|+....+.+.| ..+-|+++.+|-+.... |.
T Consensus 119 ~~f~v~~~~~~-----~yPVDLyyLmDlS~SM~-ddl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v~P~~~~~p~~ 192 (503)
T 3v4v_B 119 QQLQVRFLRAE-----GYPVDLYYLMDLSYSMK-DDLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPSK 192 (503)
T ss_dssp EEEEEEEECCS-----SCCEEEEEEEECSGGGH-HHHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCHHH
T ss_pred EEEEEEEEccC-----CCceeEEEEEecCcchh-hHHHHHHHHHHHHHHHHHhhCcCcEEeeeeecccccCCcccCCHHH
Confidence 34666665443 36899999999999996 46788887766665555 45779999999775210 00
Q ss_pred --------------cc----ccccCHhHHHHHHHHHhcCCCCCCCch----HHHHHHHH---HHhhcCCCCccEEEEEec
Q 004469 377 --------------SS----MKLASQGTIINATQWLSSLVAGGGTNI----LLPLKQAI---KLLSDTSESIPLIFLITD 431 (751)
Q Consensus 377 --------------~~----~~~~t~~~i~~a~~~I~~l~a~GgT~l----~~aL~~A~---~~l~~~~~~~~~IiLlTD 431 (751)
+. ..+. .++..+..+.|++....|+-+. .+||..|. +.+.= +...+.+||+||
T Consensus 193 l~~PC~~~~~~c~p~f~fr~~l~L-T~d~~~F~~~V~~~~iSGnlD~PEggfDAlmQaavC~~~IgW-R~a~rllV~~TD 270 (503)
T 3v4v_B 193 LRHPCPTRLERCQSPFSFHHVLSL-TGDAQAFEREVGRQSVSGNLDSPEGGFDAILQAALCQEQIGW-RNVSRLLVFTSD 270 (503)
T ss_dssp HHCCSSCSSSCCCCCCSEEEEEEE-ESCSHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTC-CSSEEEEEEEES
T ss_pred hcCCCcCCCCCCCCCcceEEEEEe-cCCHHHHHHHHhhcCccCCCCCCchHHHHHHHHhhcccccCC-CcceEEEEEECC
Confidence 00 0111 2356677778887777766433 44554444 12211 124578999999
Q ss_pred CCCCC--------------------hh-----------hHHHHHHHHhhccCCCCCeEEEEEecCCCCHHHHHHHHHhCC
Q 004469 432 GTVGD--------------------ER-----------GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGR 480 (751)
Q Consensus 432 G~~~~--------------------~~-----------~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~~lL~~LA~~gg 480 (751)
..... .. ..+..+.+.+.+.+ + ..||++ -.. .....+.|+..=.
T Consensus 271 A~fH~agDgkLaGIv~pNDg~CHL~~~~~Yt~s~~~DYPSv~ql~~kL~enn-I-~~IFAV--t~~-~~~~Y~~L~~~ip 345 (503)
T 3v4v_B 271 DTFHTAGDGKLGGIFMPSDGHCHLDSNGLYSRSTEFDYPSVGQVAQALSAAN-I-QPIFAV--TSA-ALPVYQELSKLIP 345 (503)
T ss_dssp SCBCCTTGGGTTTCCSCCCSSCCBCTTSBBGGGGGSCCCCHHHHHHHHHHHT-E-EEEEEE--CSS-SHHHHHHHHTTST
T ss_pred CCcCcCCCccccceecCCCCCeEECCCCccccccccCCCCHHHHHHHHHhcC-C-eEEEEE--ccc-chhHHHHHHHhCC
Confidence 86320 00 01233333333221 1 246665 332 3456777876654
Q ss_pred C-EEEEe-CCCccHHHHHHHHHHHhccce
Q 004469 481 G-YYDSA-YDPGSVDYRIRRFFTAASSVF 507 (751)
Q Consensus 481 G-~~~~i-~~~~~l~~~l~~~l~~~~~p~ 507 (751)
| ....+ .+...+-+.+.+.+.++.+.+
T Consensus 346 ~s~vg~Ls~dSsNiv~LI~~aY~~i~S~V 374 (503)
T 3v4v_B 346 KSAVGELSEDSSNVVQLIMDAYNSLSSTV 374 (503)
T ss_dssp TCEEEECCTTSCTHHHHHHHHHHHHHTCE
T ss_pred CceeeEccccchhHHHHHHHHHHHhheEE
Confidence 4 44443 344678888888888887654
No 45
>4g2a_A Hypothetical protein; two domains protein, yarhg domain (PFAM13308), DUF4424 (PF14 structural genomics; HET: MSE; 2.33A {Legionella pneumophila subsp}
Probab=95.84 E-value=0.19 Score=52.48 Aligned_cols=90 Identities=11% Similarity=0.169 Sum_probs=67.8
Q ss_pred eeEEEEEEEEEecccCCCceeEEEEEeecCCCc------------------eEEEEEEEECCEEEEEEEEeehHHHHHHH
Q 004469 99 TAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERG------------------SLLGVEVEIDGRSYQSKLISLDDAEYKEN 160 (751)
Q Consensus 99 ~A~vtv~q~f~N~~~~~~~~~E~~y~FPLp~~a------------------~V~gf~~~i~gk~i~g~V~eke~A~~~~~ 160 (751)
.+.|+|.-+|.|| ++......+.||+|... .|..|...||||.+..++.....-
T Consensus 43 ~~~V~v~f~F~Np---~~~~ktI~vgFP~p~~~~~~~~~~~~~~~~~~~~~~i~dFkt~VNGk~V~~~~~~~a~~----- 114 (322)
T 4g2a_A 43 SWHYNCNFTFKNT---LNKEVTISMAFPFPINDGNSEIALPAGQQTNVGQALVYDFLVTVNDKQVSAQRGNIAPD----- 114 (322)
T ss_dssp EEEEEEEEEEEEC---SSSCEEEEEEEEECBCCSSSEECCCTTCCCCTTCBSCEEEEEEETTEEECCEEEECCCB-----
T ss_pred ceEEEEEEEEeCC---CCCcEEEEEEecCCCccCCcccccccccCCCCCCcceeeEEEEECCEEcccchhhcCcc-----
Confidence 4789999999994 78889999999988332 388999999999999887643321
Q ss_pred hccccCCccceecCcEEEEecCCCCCCEEEEEEEEEEeeeec
Q 004469 161 VGKSKGDGRYLKGQIYTLRIPQVDGGSTLSIKVNWSQKLTYE 202 (751)
Q Consensus 161 ~a~~~~d~alL~~n~F~~~VgnIppg~~v~I~I~Y~q~L~~~ 202 (751)
.+.+.--.+.|...+ ..++|+++.|+-+|.-.+...
T Consensus 115 -----~~k~v~~~~~Y~f~~-~F~~G~~~~V~HsY~~~~s~~ 150 (322)
T 4g2a_A 115 -----QNKGLYYEDAYFWKT-TFPPLATVNIHHDYSTGATYD 150 (322)
T ss_dssp -----GGGTBCCSEEEEEEE-EECTTCEEEEEEEEEEECEEE
T ss_pred -----ccCCcccceeEEEee-ecCCCCeeEEEEEEEecCcCC
Confidence 111112345677776 789999999999998777665
No 46
>1o98_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; isomerase, alpha/beta-type structure; HET: 2PG; 1.4A {Bacillus stearothermophilus} SCOP: c.105.1.1 c.76.1.3 PDB: 1ejj_A* 1eqj_A* 1o99_A* 2ify_A
Probab=25.92 E-value=2.2e+02 Score=31.70 Aligned_cols=75 Identities=16% Similarity=0.134 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhcCCCCccEEEEEecCCCC-ChhhHHHHHHHHhhccCCCCCeEEEEEecCCCCH--------HHHHHHH
Q 004469 406 LLPLKQAIKLLSDTSESIPLIFLITDGTVG-DERGICNEIKSYLTNTRSISPRICTFGVGLYCNH--------YFLQILA 476 (751)
Q Consensus 406 ~~aL~~A~~~l~~~~~~~~~IiLlTDG~~~-~~~~i~~~v~~~~~~~~~~~~rIft~GiG~~~n~--------~lL~~LA 476 (751)
..+|..+++......+..-.+=|+|||.+. ..+.+...++-+ .+.+-..++||+|.=|.++.. .+.+.|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~H~~gl~sdggvhsh~~hl~~l~~~a-~~~g~~~v~~H~~~dGrD~~p~s~~~~~~~~~~~~~ 172 (511)
T 1o98_A 94 NETFLAAMNHVKQHGTSLHLFGLLSDGGVHSHIHHLYALLRLA-AKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIK 172 (511)
T ss_dssp CHHHHHHHHHHHHHTCCEEEEEECSSCCSSCCHHHHHHHHHHH-HHTTCCCEEEEEEECSSSSCTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCeEEEEEeccCCCCccHHHHHHHHHHHH-HHCCCCeEEEEEEccCCCCCCchHHHHHHHHHHHHH
Confidence 455666666554433445567789999885 445555554444 333444578899888876652 3445566
Q ss_pred HhCCC
Q 004469 477 QIGRG 481 (751)
Q Consensus 477 ~~ggG 481 (751)
+.+-|
T Consensus 173 ~~~~~ 177 (511)
T 1o98_A 173 EYGVG 177 (511)
T ss_dssp HHTCC
T ss_pred HhCCE
Confidence 66544
No 47
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=24.89 E-value=1.8e+02 Score=25.73 Aligned_cols=30 Identities=23% Similarity=0.533 Sum_probs=21.4
Q ss_pred CCCCCCEEEEEEEEEEeeeeccCeEEEEEEEe
Q 004469 182 QVDGGSTLSIKVNWSQKLTYEEGQFCLSVPFT 213 (751)
Q Consensus 182 nIppg~~v~I~I~Y~q~L~~~~g~~~~~lpf~ 213 (751)
.|+||+.+.++.+|.+ ....|.|.+..-|.
T Consensus 73 tl~pGE~~~f~~~w~~--~~~pG~Ytl~a~l~ 102 (120)
T 3isy_A 73 TLESGETYDFSDVWKE--VPEPGTYEVKVTFK 102 (120)
T ss_dssp EECTTCEEEEEEEESS--CCCSEEEEEEEEEC
T ss_pred EECCCCEEEEEEEeCC--CCCCccEEEEEEEE
Confidence 5799999999999984 23467777555433
No 48
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1
Probab=20.35 E-value=80 Score=28.94 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=18.1
Q ss_pred CeEEEE---EecCCCCHHHHHHHHHhCCCEEE
Q 004469 456 PRICTF---GVGLYCNHYFLQILAQIGRGYYD 484 (751)
Q Consensus 456 ~rIft~---GiG~~~n~~lL~~LA~~ggG~~~ 484 (751)
.++.++ |+|+. ...+|+-||-.+||.+.
T Consensus 80 l~v~AVKAPgfGd~-Rk~~L~DiAilTGg~vi 110 (145)
T 1srv_A 80 LSVAAVKAPGFGDR-RKEMLKDIAAVTGGTVI 110 (145)
T ss_dssp CCEEEEECCSSHHH-HHHHHHHHHHHHTCCEE
T ss_pred ceEEEEeCCCcchh-hHHHHHHHHHHhCCEEE
Confidence 445555 45543 35678888888888765
Done!