BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004470
(751 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 88/200 (44%), Gaps = 11/200 (5%)
Query: 410 GKMVEAEKLFHEMLGRGLEPDEIVYTALI------DGYCKAG---GMKKAFSLHNNMVHM 460
G ++EA +L+ E G++ + Y L+ + ++ G+ + F + M+
Sbjct: 40 GDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD 99
Query: 461 RLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQA 520
++ PN T+T A + E A +++ +M G+Q + +Y + G C+ G+ +A
Sbjct: 100 KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159
Query: 521 VKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNG 580
++ M + P+ ++ + K ++ L+ + D Q S TF+++
Sbjct: 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEW 219
Query: 581 FCMSGMIEDGEKLLKWMLEK 600
F + G K KW ++K
Sbjct: 220 FKSEVATKTGVK--KWDVKK 237
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 9/120 (7%)
Query: 305 GELQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAET---------ILREMMNQ 355
G++ L+L +E + G++ + Y YN ++ + E+ I ++M+
Sbjct: 40 GDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD 99
Query: 356 GIVPDNVIYTTLIDGFCKMGNVAAAYRLFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEA 415
+VP+ +T + A+ + +M+ I P L +Y + GFC G +A
Sbjct: 100 KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
Query: 474 DGLCKSGELETANELLHEMCRKGLQLNIYTYNSI--VNGLCKAGN-------ILQAVKLM 524
D K G++ A L E R G+QL+ Y YN + V L +A + + +
Sbjct: 34 DMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIF 93
Query: 525 EDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMS 584
+ M V P+ T+T + A ++++ M G+QP + ++ + GFC
Sbjct: 94 KQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK 153
Query: 585 G 585
G
Sbjct: 154 G 154
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 70/170 (41%), Gaps = 9/170 (5%)
Query: 543 MDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGM---------IEDGEKL 593
+D K G++++A L + G+Q S +NVL+ ++ + G +
Sbjct: 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDI 92
Query: 594 LKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCK 653
K M+ + PN AT+ + ++D + K M A GI P +Y L G C+
Sbjct: 93 FKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR 152
Query: 654 ARNMKEAWFLHKEMVQKGFNLTTSSYNALIKGFLKRKKYLEARELFEEMR 703
+ +A+ + MV+ AL+K + K + + + +R
Sbjct: 153 KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLR 202
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%)
Query: 307 LQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTT 366
L R + ++M + + PN T+ + RL A ++++M GI P Y
Sbjct: 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145
Query: 367 LIDGFCKMGNVAAAYRL 383
+ GFC+ G+ AY +
Sbjct: 146 ALFGFCRKGDADKAYEV 162
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/200 (19%), Positives = 83/200 (41%), Gaps = 11/200 (5%)
Query: 410 GKMVEAEKLFHEMLGRGLEPDEIVYTALI------DGYCKAG---GMKKAFSLHNNMVHM 460
G ++EA +L+ E G++ + Y L+ + ++ G+ + F + +
Sbjct: 40 GDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQXIVD 99
Query: 461 RLTPNVVTYTALADGLCKSGELETANELLHEMCRKGLQLNIYTYNSIVNGLCKAGNILQA 520
++ PN T+T A + E A + + + G+Q + +Y + G C+ G+ +A
Sbjct: 100 KVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDADKA 159
Query: 521 VKLMEDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNG 580
++ + P+ ++ + K ++ L+ + D Q S TF+ +
Sbjct: 160 YEVDAHXVESEVVPEEPELAALLKVSXDTKNADKVYKTLQRLRDLVRQVSKSTFDXIEEW 219
Query: 581 FCMSGMIEDGEKLLKWMLEK 600
F + G K KW ++K
Sbjct: 220 FKSEVATKTGVK--KWDVKK 237
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 29/153 (18%), Positives = 59/153 (38%), Gaps = 23/153 (15%)
Query: 272 IKEAHLLLLQMELRGCSPDVVSFSTIINGYCYLGELQRVLKLIEEMQIKGLKPNPYTYNS 331
I+++ LL+ +L CS G++ L+L +E + G++ + Y YN
Sbjct: 21 IQQSPEALLKQKLDXCSKK--------------GDVLEALRLYDEARRNGVQLSQYHYNV 66
Query: 332 VVRLLCKTSKVVEAET---------ILREMMNQGIVPDNVIYTTLIDGFCKMGNVAAAYR 382
++ + E+ I ++ + +VP+ +T + A+
Sbjct: 67 LLYVCSLAEAATESSPNPGLSRGFDIFKQXIVDKVVPNEATFTNGARLAVAKDDPEXAFD 126
Query: 383 LFDEMRGLNIIPDLLTYTAIICGFCLTGKMVEA 415
+ + I P L +Y + GFC G +A
Sbjct: 127 XVKQXKAFGIQPRLRSYGPALFGFCRKGDADKA 159
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 9/121 (7%)
Query: 474 DGLCKSGELETANELLHEMCRKGLQLNIYTYNSI--VNGLCKAGN-------ILQAVKLM 524
D K G++ A L E R G+QL+ Y YN + V L +A + + +
Sbjct: 34 DXCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIF 93
Query: 525 EDMEVAGFHPDTFTYTTIMDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMS 584
+ V P+ T+T + A + ++ G+QP + ++ + GFC
Sbjct: 94 KQXIVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRK 153
Query: 585 G 585
G
Sbjct: 154 G 154
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 32/77 (41%)
Query: 307 LQRVLKLIEEMQIKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTT 366
L R + ++ + + PN T+ + RL A +++ GI P Y
Sbjct: 86 LSRGFDIFKQXIVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGP 145
Query: 367 LIDGFCKMGNVAAAYRL 383
+ GFC+ G+ AY +
Sbjct: 146 ALFGFCRKGDADKAYEV 162
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 9/128 (7%)
Query: 543 MDAYCKSGEMVKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGM---------IEDGEKL 593
+D K G++++A L + G+Q S +NVL+ ++ + G +
Sbjct: 33 LDXCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDI 92
Query: 594 LKWMLEKGLKPNAATYNPLIKQHCLRNDMRTTAKIYKGMCAQGITPDGNTYNILLQGHCK 653
K + + PN AT+ + ++D K A GI P +Y L G C+
Sbjct: 93 FKQXIVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCR 152
Query: 654 ARNMKEAW 661
+ +A+
Sbjct: 153 KGDADKAY 160
>pdb|4F21|A Chain A, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|B Chain B, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|C Chain C, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|D Chain D, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|E Chain E, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|F Chain F, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|G Chain G, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|H Chain H, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
Length = 246
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 319 IKGLKPNPYTYNSVVRLLCKTSKVVEAETILREMMNQGIVPDNVIYTTLIDGFCKMGNVA 378
IK L N + N VV + S + + ++ +NQGI +N+I + GF + G +
Sbjct: 93 IKSLDAN--SLNRVVDVEGINSSIAKVNKLIDSQVNQGIASENII----LAGFSQ-GGII 145
Query: 379 AAYRLFDEMRGLNIIPDLLTY 399
A Y R L I L TY
Sbjct: 146 ATYTAITSQRKLGGIMALSTY 166
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 517
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 80/203 (39%), Gaps = 48/203 (23%)
Query: 553 VKAHELLRDMLDKGLQPSVVTFNVLMNGFCMSGMIEDGEKLLKWMLEKGLKPNAATYNPL 612
+ A L+D+L L P T +L++G + +DG LL
Sbjct: 16 ISAARGLQDVLRTNLGPKG-TMKMLVSGAGDIKLTKDGNVLL------------------ 56
Query: 613 IKQHCLRNDMRTTAKIYKGMCAQG-ITPDGNTYNILLQGH-CKARNMKEAWFLHKEMVQK 670
H ++ T + I K AQ IT DG T N+L+ G K ++ + LH ++ +
Sbjct: 57 ---HEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITE 113
Query: 671 GFNLTTSSYNALIKGFLKRKKYLEARELFEEMRRGGLVADREIYYFFVDINFEEGNTEIT 730
GF K ++LE ++ +EM DRE +D+ T++
Sbjct: 114 GFEAAKE----------KALQFLEQVKVSKEM-------DRET---LIDVARTSLRTKVH 153
Query: 731 LELCD----AAIECYLVGKATDE 749
EL D A ++ L K DE
Sbjct: 154 AELADVLTEAVVDSILAIKKQDE 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,624,692
Number of Sequences: 62578
Number of extensions: 946464
Number of successful extensions: 2551
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2525
Number of HSP's gapped (non-prelim): 20
length of query: 751
length of database: 14,973,337
effective HSP length: 106
effective length of query: 645
effective length of database: 8,340,069
effective search space: 5379344505
effective search space used: 5379344505
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)